BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045644
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 32/223 (14%)
Query: 67 VISEEQKVDWIDIFFMTTLPIH--LRKPHLFPKLPLYPLDFS-----LSE---------- 109
V +E DW FF+ LPI P L + DF+ L+E
Sbjct: 77 VQAEVTDXDWESTFFLKHLPISNISEVPDLDEEYREVXRDFAKRLEKLAEELLDLLCENL 136
Query: 110 -----YFENGF-QSMGMNY------YPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQ 157
Y +N F S G N+ YPPCP+P+ + GL ++D + +L + ++V GLQ
Sbjct: 137 GLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQ 196
Query: 158 IKKDGKWIPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLSISTVYLVIYD 217
+ KDG+WI V P ++ VVN+G LE++TNG Y+S+ HRVI R S+++ Y D
Sbjct: 197 LLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSD 256
Query: 218 GEMYPTSNLV---SENNPLLFKRVTVEEYFRNLCARKLRGKSP 257
+YP LV +E N ++ + ++Y + K + K P
Sbjct: 257 AVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGLKFQAKEP 299
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 124/288 (43%), Gaps = 83/288 (28%)
Query: 1 MLAIPPRYIRPGQDLTTISDNNLDSRL----------LQSLFSEESTDSE--LSRLHFAC 48
+++IP YIRP ++L +I+D L+ + L+++ S++ E + L A
Sbjct: 14 IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKAS 73
Query: 49 KEWASFQL----------SYTCRFGQAFV---ISEEQK---------------------- 73
+W L + G+ F + E++K
Sbjct: 74 LDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNAS 133
Query: 74 --VDWIDIFFMTTLPIHLRKPHLFPKLPLYPLDFSLSEY--------------------- 110
++W D FF P R ++PK P ++ + SEY
Sbjct: 134 GQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIE-ATSEYAKCLRLLATKVFKALSVGLGL 192
Query: 111 -----------FENGFQSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIK 159
E M +NYYP CPQPE +G+ ++D S LT +L N V GLQ+
Sbjct: 193 EPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLF 251
Query: 160 KDGKWIPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLS 207
+GKW+ VP++ V++IG LEI++NG Y+SI HR +VN + R+S
Sbjct: 252 YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 299
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 124/288 (43%), Gaps = 83/288 (28%)
Query: 1 MLAIPPRYIRPGQDLTTISDNNLDSRL----------LQSLFSEESTDSE--LSRLHFAC 48
+++IP YIRP ++L +I+D L+ + L+++ S++ E + L A
Sbjct: 15 IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKAS 74
Query: 49 KEWASFQL----------SYTCRFGQAFV---ISEEQK---------------------- 73
+W L + G+ F + E++K
Sbjct: 75 LDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNAS 134
Query: 74 --VDWIDIFFMTTLPIHLRKPHLFPKLPLYPLDFSLSEY--------------------- 110
++W D FF P R ++PK P ++ + SEY
Sbjct: 135 GQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIE-ATSEYAKCLRLLATKVFKALSVGLGL 193
Query: 111 -----------FENGFQSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIK 159
E M +NYYP CPQPE +G+ ++D S LT +L N V GLQ+
Sbjct: 194 EPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLF 252
Query: 160 KDGKWIPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLS 207
+GKW+ VP++ V++IG LEI++NG Y+SI HR +VN + R+S
Sbjct: 253 YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 125/288 (43%), Gaps = 83/288 (28%)
Query: 1 MLAIPPRYIRPGQDLTTISDNNLDSRL----------LQSLFSEESTDSE--LSRLHFAC 48
+++IP YIRP ++L +I+D L+ + L+++ S++ E + L A
Sbjct: 15 IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKAS 74
Query: 49 KEWASFQL----------SYTCRFGQAFV---ISEEQK---------------------- 73
+W L + G+ F + E++K
Sbjct: 75 LDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNAS 134
Query: 74 --VDWIDIFFMTTLPIHLRKPHLFPKLPLYPLDFSLSEYFE------------------- 112
++W D FF P R ++PK P ++ + SEY +
Sbjct: 135 GQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIE-ATSEYAKCLRLLATKVFKALSVGLGL 193
Query: 113 ---------NGFQSM----GMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIK 159
G + + +NYYP CPQPE +G+ ++D S LT +L N V GLQ+
Sbjct: 194 EPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILH-NXVPGLQLF 252
Query: 160 KDGKWIPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLS 207
+GKW+ VP++ V +IG LEI++NG Y+SI HR +VN + R+S
Sbjct: 253 YEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 9/142 (6%)
Query: 112 ENGFQSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQI-KKDGKWIPVTPV 170
++G + + +YPP P+ V + D + +T+LL E GL++ +DG+W+P+ P
Sbjct: 165 QDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEE-GGLEVLDRDGQWLPINPP 223
Query: 171 PNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLSI---STVYLVIY--DGEMYPTSN 225
P V+NIG LE +TN S HRV VN R + ST + + + D E+ N
Sbjct: 224 PGCLVINIGDXLERLTNNVLPSTVHRV-VNPPPERRGVPRYSTPFFLHFASDYEIKTLQN 282
Query: 226 LVSENNPLLF-KRVTVEEYFRN 246
V+ NP + + +T +E+ +
Sbjct: 283 CVTAENPDRYPESITADEFLQQ 304
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 122 YYPPCPQPEK--VVGLTTNSDDSVLTMLLEINEVEGLQIK-KDGKWIPVTPVPNAFVVNI 178
+YPP E+ + + D +++T+L NE GLQ+K KDG W+ V ++NI
Sbjct: 156 HYPPXTGDEEXGAIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFGNIIINI 214
Query: 179 GVVLEIVTNGTYRSIEHRVI----VNSIQGRLSI 208
G L+ ++G + S HRVI + + R+S+
Sbjct: 215 GDXLQEASDGYFPSTSHRVINPEGTDKTKSRISL 248
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 120 MNYYPPCPQ----PEKVVGLTTNSDDSVLTMLLEINEVEG---LQIKKDGKWIPVTPVPN 172
Y+P P+ E+ + + + D S++T++ + G LQ + G + + P+
Sbjct: 161 FRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPD 220
Query: 173 AFVVNIGVVLEIVTNGTYRSIEHRVIV---NSIQGRLSISTVYLV 214
A +V G + +VT G ++ H V + I G S+V+ +
Sbjct: 221 AVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSQTSSVFFL 265
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 120 MNYYPPCPQ----PEKVVGLTTNSDDSVLTMLLEINEVEG---LQIKKDGKWIPVTPVPN 172
Y+P P+ E+ + + + D S++T++ + G LQ + G + + P+
Sbjct: 161 FRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPD 220
Query: 173 AFVVNIGVVLEIVTNGTYRSIEHRVIV---NSIQGRLSISTVYLV 214
A +V G + +VT G ++ H V + I G S+V+ +
Sbjct: 221 AVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFL 265
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 120 MNYYPPCPQ----PEKVVGLTTNSDDSVLTMLLEINEVEG---LQIKKDGKWIPVTPVPN 172
Y+P P+ E+ + + + D S++T++ + G LQ + G + + P+
Sbjct: 181 FRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPD 240
Query: 173 AFVVNIGVVLEIVTNGTYRSIEHRVIV---NSIQGRLSISTVYLV 214
A +V G + +VT G ++ H V + I G S+V+ +
Sbjct: 241 AVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFL 285
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 120 MNYYPPCPQ----PEKVVGLTTNSDDSVLTMLLEINEVEG---LQIKKDGKWIPVTPVPN 172
Y+P P+ E+ + + + D S++T++ + G LQ + G + + P+
Sbjct: 161 FRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPD 220
Query: 173 AFVVNIGVVLEIVTNGTYRSIEHRVIV---NSIQGRLSISTVYLV 214
A +V G + +VT G ++ H V + I G S+V+ +
Sbjct: 221 AVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFL 265
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 120 MNYYPPCPQ----PEKVVGLTTNSDDSVLTMLLEINEVEG---LQIKKDGKWIPVTPVPN 172
Y+P P+ E+ + + + D S++T++ + G LQ + G + + P+
Sbjct: 161 FRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPD 220
Query: 173 AFVVNIGVVLEIVTNGTYRSIEHRVIV---NSIQGRLSISTVYLV 214
A +V G + +VT G ++ H V + I G S+V+ +
Sbjct: 221 AVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFL 265
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 138 NSDDSVLTMLLEINEVEGLQIKKDGKWIPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRV 197
+ D S++T+L + N V+ LQ++ + + +++N G + +TN Y++ HRV
Sbjct: 214 HEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRV 272
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 138 NSDDSVLTMLLEINEVEGLQIKKDGKWIPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRV 197
+ D S++T+L + N V+ LQ++ + + +++N G + +TN Y++ HRV
Sbjct: 214 HEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRV 272
>pdb|3ZRH|A Chain A, Crystal Structure Of The Lys29, Lys33-Linkage-Specific
Trabid Otu Deubiquitinase Domain Reveals An
Ankyrin-Repeat Ubiquitin Binding Domain (Ankubd)
Length = 454
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 17 TISDNNLDSRLLQSLFSEESTDSELSRL---------HFACKEWASFQLSYTCRFGQAFV 67
T D LDS +LQ+ + DS L + H+ W ++ Y+ FG F
Sbjct: 196 TAGDCLLDS-VLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFS 254
Query: 68 ISEEQ-KVDWIDIFFMTTLP-IHLRKPHLF 95
+ EEQ + DW I + + P L + H+F
Sbjct: 255 LREEQWQEDWAFILSLASQPGASLEQTHIF 284
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,125,905
Number of Sequences: 62578
Number of extensions: 328873
Number of successful extensions: 715
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 697
Number of HSP's gapped (non-prelim): 23
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)