BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045647
         (218 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 15/135 (11%)

Query: 8   LPLGCKFQPSDEQLVLFYLFNKISG--TPAPFLDDFVRTENLYGNKEPWQIWRQFGVRDL 65
           LP G +F P+D++LV  YL  K +G   P P + +     +LY   +PW +      R L
Sbjct: 15  LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEV----DLY-KFDPWDL----PERAL 65

Query: 66  EDGEDLYFFTRLKKKSVNGSRIDRRVGTGTWQGEDAGKAVVSRNSRKKIGSKKRFRYEKD 125
               + YFFT   +K  NGSR +R  G G W+   A K V  R   + +G KK   +   
Sbjct: 66  FGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRG--RTLGIKKALVFYAG 123

Query: 126 QSPHNCC--WILHEY 138
           ++P      WI+HEY
Sbjct: 124 KAPRGVKTDWIMHEY 138


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 12/166 (7%)

Query: 4   TRPPLPLGCKFQPSDEQLVLFYLFNKISGTPAPFLDDFVRTENLYGNKEPWQIWRQFGVR 63
           T+  LP G +F P+DE+L++ YL  K +G    F    +   +LY   +PW +      +
Sbjct: 16  TQLSLPPGFRFYPTDEELMVQYLCRKAAGYD--FSLQLIAEIDLY-KFDPWVL----PNK 68

Query: 64  DLEDGEDLYFFTRLKKKSVNGSRIDRRVGTGTWQGEDAGKAVVSRNSRKKIGSKKRFRYE 123
            L   ++ YFF+   +K  NGSR +R  G+G W+     K + +   R  +G KK   + 
Sbjct: 69  ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR--VGIKKALVFY 126

Query: 124 KDQSPHNC--CWILHEYXXXX-XXXXXXXXXXDLVLCRIRKNGEPA 166
             ++P      WI+HEY               D VLCRI K    A
Sbjct: 127 IGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 172


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 12/166 (7%)

Query: 4   TRPPLPLGCKFQPSDEQLVLFYLFNKISGTPAPFLDDFVRTENLYGNKEPWQIWRQFGVR 63
           T+  LP G +F P+DE+L++ YL  K +G    F    +   +LY   +PW +      +
Sbjct: 13  TQLSLPPGFRFYPTDEELMVQYLCRKAAGYD--FSLQLIAEIDLY-KFDPWVL----PNK 65

Query: 64  DLEDGEDLYFFTRLKKKSVNGSRIDRRVGTGTWQGEDAGKAVVSRNSRKKIGSKKRFRYE 123
            L   ++ YFF+   +K  NGSR +R  G+G W+     K + +   R  +G KK   + 
Sbjct: 66  ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR--VGIKKALVFY 123

Query: 124 KDQSPHNC--CWILHEYXXXX-XXXXXXXXXXDLVLCRIRKNGEPA 166
             ++P      WI+HEY               D VLCRI K    A
Sbjct: 124 IGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 169


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.137    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,748,939
Number of Sequences: 62578
Number of extensions: 285668
Number of successful extensions: 506
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 4
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)