Query 045647
Match_columns 218
No_of_seqs 178 out of 992
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 06:36:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 3.6E-57 1.2E-61 371.3 15.3 152 3-163 10-169 (174)
2 1ut7_A No apical meristem prot 100.0 1.5E-56 5.1E-61 367.0 14.8 152 4-164 13-167 (171)
3 1ldd_A APC2WHB, anaphase promo 37.5 15 0.00053 25.1 1.8 27 9-36 37-64 (74)
4 4dox_A Coat protein; all helix 28.1 40 0.0014 28.0 3.1 28 3-30 150-177 (226)
5 1cmb_A Met APO-repressor; DNA- 26.8 65 0.0022 22.9 3.5 39 15-60 50-88 (104)
6 3nr5_A MAF1, repressor of RNA 23.6 31 0.001 27.2 1.5 14 42-56 119-132 (164)
7 3dz1_A Dihydrodipicolinate syn 19.6 53 0.0018 28.0 2.3 18 7-26 108-125 (313)
8 3cpr_A Dihydrodipicolinate syn 18.0 52 0.0018 27.9 1.9 18 8-26 118-135 (304)
9 1f6k_A N-acetylneuraminate lya 17.8 55 0.0019 27.5 2.0 18 8-26 106-123 (293)
10 2ojp_A DHDPS, dihydrodipicolin 17.4 57 0.0019 27.4 2.0 17 8-25 103-119 (292)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=3.6e-57 Score=371.25 Aligned_cols=152 Identities=32% Similarity=0.613 Sum_probs=127.6
Q ss_pred CCCCCCCCCCccCCCHHHHHHHHHhhhhcCCCCCCCCCcccccCCCCCCCCCchhhhcccccCCCCceEEEEEecccccC
Q 045647 3 GTRPPLPLGCKFQPSDEQLVLFYLFNKISGTPAPFLDDFVRTENLYGNKEPWQIWRQFGVRDLEDGEDLYFFTRLKKKSV 82 (218)
Q Consensus 3 ~~~~~LppGfRF~PTDeELV~~YL~~Ki~g~~~p~~~~ii~~~DvY~~~~Pw~L~~~~~~~~~~~~~~wyFFs~~~kk~~ 82 (218)
.....|||||||||||||||.|||++|+.|.+++. .+|.++|||+ +|||+||+.+. .++.+|||||++++||+
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~--~~I~evDvy~-~~Pw~Lp~~~~----~g~~ewYFFs~r~~ky~ 82 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPV--PIIAEVDLYK-FDPWDLPERAL----FGAREWYFFTPRDRKYP 82 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSS--SCCEECCGGG-SCGGGSGGGCS----SCSSEEEEEEECCC---
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCc--Ceeeeccccc-CCchhhhhhhc----cCCceEEEEeccccccC
Confidence 45678999999999999999999999999999986 3666679999 99999998742 45679999999999999
Q ss_pred CCCcccccccCceeeecCCCceEEeCCCCeEEeeEEeEeeecCCCCC--CcCeEEEEEEeCCCCCCC------CCCCCCe
Q 045647 83 NGSRIDRRVGTGTWQGEDAGKAVVSRNSRKKIGSKKRFRYEKDQSPH--NCCWILHEYSLNPLQLPQ------NLQSSDL 154 (218)
Q Consensus 83 ~g~R~~R~~~~G~Wk~~g~~k~I~~~~~g~~vG~kktl~f~~g~~~~--~T~WvM~EY~l~~~~~~~------~~~~~~~ 154 (218)
+|.|++|++++||||+||+++.|.+ +|++||+||+|+||.|+++. +|+|+||||+|.+..... ....++|
T Consensus 83 ~g~R~nR~t~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~w 160 (174)
T 3ulx_A 83 NGSRPNRAAGNGYWKATGADKPVAP--RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDW 160 (174)
T ss_dssp --CCSCEEETTEEEEECSCCEEECC--SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSE
T ss_pred CCCCceeecCCceEccCCCCcEEee--CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCE
Confidence 9999999999999999999999975 47999999999999998875 899999999999874321 1346899
Q ss_pred EEEEEEecC
Q 045647 155 VLCRIRKNG 163 (218)
Q Consensus 155 VLCrI~~k~ 163 (218)
||||||+|.
T Consensus 161 VlCrvf~K~ 169 (174)
T 3ulx_A 161 VLCRLYNKK 169 (174)
T ss_dssp EEEEEEESC
T ss_pred EEEEEEEcC
Confidence 999999885
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.5e-56 Score=367.03 Aligned_cols=152 Identities=32% Similarity=0.604 Sum_probs=124.2
Q ss_pred CCCCCCCCCccCCCHHHHHHHHHhhhhcCCCCCCCCCcccccCCCCCCCCCchhhhcccccCCCCceEEEEEecccccCC
Q 045647 4 TRPPLPLGCKFQPSDEQLVLFYLFNKISGTPAPFLDDFVRTENLYGNKEPWQIWRQFGVRDLEDGEDLYFFTRLKKKSVN 83 (218)
Q Consensus 4 ~~~~LppGfRF~PTDeELV~~YL~~Ki~g~~~p~~~~ii~~~DvY~~~~Pw~L~~~~~~~~~~~~~~wyFFs~~~kk~~~ 83 (218)
....|||||||||||||||.|||++|+.|.+++. .+|.++|||+ +|||+||+.+ ..++++|||||++++|+++
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~--~~I~e~Diy~-~~Pw~Lp~~~----~~g~~ewyFFs~r~~k~~~ 85 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSL--QLIAEIDLYK-FDPWVLPNKA----LFGEKEWYFFSPRDRKYPN 85 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSS--CCSEECCGGG-SCGGGHHHHS----SSCSSEEEEEEECCC----
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCC--CeEeeccccc-CChhHhhchh----hcCCccEEEEeccccccCC
Confidence 3568999999999999999999999999999985 4666679999 9999999874 2457899999999999999
Q ss_pred CCcccccccCceeeecCCCceEEeCCCCeEEeeEEeEeeecCCCCC--CcCeEEEEEEeCCCCCCC-CCCCCCeEEEEEE
Q 045647 84 GSRIDRRVGTGTWQGEDAGKAVVSRNSRKKIGSKKRFRYEKDQSPH--NCCWILHEYSLNPLQLPQ-NLQSSDLVLCRIR 160 (218)
Q Consensus 84 g~R~~R~~~~G~Wk~~g~~k~I~~~~~g~~vG~kktl~f~~g~~~~--~T~WvM~EY~l~~~~~~~-~~~~~~~VLCrI~ 160 (218)
|.|++|+|++||||+||+++.|.+ ++++||+||+|+||.|+++. +|+|+||||+|.+..... ....++|||||||
T Consensus 86 g~R~~R~t~~G~Wk~tG~~k~I~~--~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~ 163 (171)
T 1ut7_A 86 GSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY 163 (171)
T ss_dssp ---CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEE
T ss_pred CCcccccCCCCEEeccCCCceEEe--cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEE
Confidence 999999999999999999999987 46999999999999998865 899999999999874221 2356899999999
Q ss_pred ecCC
Q 045647 161 KNGE 164 (218)
Q Consensus 161 ~k~~ 164 (218)
+|..
T Consensus 164 ~k~~ 167 (171)
T 1ut7_A 164 KKQS 167 (171)
T ss_dssp ECC-
T ss_pred EcCC
Confidence 9974
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=37.52 E-value=15 Score=25.10 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=23.0
Q ss_pred CCCCccCC-CHHHHHHHHHhhhhcCCCCC
Q 045647 9 PLGCKFQP-SDEQLVLFYLFNKISGTPAP 36 (218)
Q Consensus 9 ppGfRF~P-TDeELV~~YL~~Ki~g~~~p 36 (218)
|.|+.|.. |++||-. ||-.++....+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 67899998 9999987 699999988764
No 4
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=28.10 E-value=40 Score=27.97 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=19.1
Q ss_pred CCCCCCCCCCccCCCHHHHHHHHHhhhh
Q 045647 3 GTRPPLPLGCKFQPSDEQLVLFYLFNKI 30 (218)
Q Consensus 3 ~~~~~LppGfRF~PTDeELV~~YL~~Ki 30 (218)
+..++-+-|..+.||++|+|-+=..+++
T Consensus 150 ~AAl~P~~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 150 PAAMQPPSGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp TTSCCCTTCCSSCCCHHHHHHHHTC---
T ss_pred ccccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3444455599999999999998555544
No 5
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=26.83 E-value=65 Score=22.91 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHhhhhcCCCCCCCCCcccccCCCCCCCCCchhhhc
Q 045647 15 QPSDEQLVLFYLFNKISGTPAPFLDDFVRTENLYGNKEPWQIWRQF 60 (218)
Q Consensus 15 ~PTDeELV~~YL~~Ki~g~~~p~~~~ii~~~DvY~~~~Pw~L~~~~ 60 (218)
|-|..||+..-...-..|+|||... |+-+ ..|.++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D~------Dl~K-d~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDDA------DLRK-ERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCGG------GGBT-TSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCch------hhhh-cCCccchHHH
Confidence 5677888876666778999999742 7766 6788887653
No 6
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=23.56 E-value=31 Score=27.23 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=11.0
Q ss_pred ccccCCCCCCCCCch
Q 045647 42 VRTENLYGNKEPWQI 56 (218)
Q Consensus 42 i~~~DvY~~~~Pw~L 56 (218)
+.+||||. +.|..-
T Consensus 119 l~dC~IYs-Y~Pd~~ 132 (164)
T 3nr5_A 119 LAECDIYS-YNPDLD 132 (164)
T ss_dssp GGGCEEEE-ECCCGG
T ss_pred ccCCeEEE-EcCCCC
Confidence 56789999 999843
No 7
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=19.56 E-value=53 Score=27.99 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=13.7
Q ss_pred CCCCCCccCCCHHHHHHHHH
Q 045647 7 PLPLGCKFQPSDEQLVLFYL 26 (218)
Q Consensus 7 ~LppGfRF~PTDeELV~~YL 26 (218)
-+|| | |.||+++|+.||-
T Consensus 108 v~~P-~-~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 108 IAPP-P-SLRTDEQITTYFR 125 (313)
T ss_dssp ECCC-T-TCCSHHHHHHHHH
T ss_pred ECCC-C-CCCCHHHHHHHHH
Confidence 3666 4 5699999999863
No 8
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=18.03 E-value=52 Score=27.91 Aligned_cols=18 Identities=22% Similarity=0.264 Sum_probs=14.6
Q ss_pred CCCCCccCCCHHHHHHHHH
Q 045647 8 LPLGCKFQPSDEQLVLFYL 26 (218)
Q Consensus 8 LppGfRF~PTDeELV~~YL 26 (218)
+|| |.|.||+++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 566 558999999999873
No 9
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=17.76 E-value=55 Score=27.51 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=14.2
Q ss_pred CCCCCccCCCHHHHHHHHH
Q 045647 8 LPLGCKFQPSDEQLVLFYL 26 (218)
Q Consensus 8 LppGfRF~PTDeELV~~YL 26 (218)
+||- .|.||+++|+.||-
T Consensus 106 ~~P~-y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 106 VTPF-YYKFSFPEIKHYYD 123 (293)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4564 48999999999864
No 10
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=17.38 E-value=57 Score=27.40 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=13.8
Q ss_pred CCCCCccCCCHHHHHHHH
Q 045647 8 LPLGCKFQPSDEQLVLFY 25 (218)
Q Consensus 8 LppGfRF~PTDeELV~~Y 25 (218)
+|| |.|.||+++|+.||
T Consensus 103 ~~P-~y~~~s~~~l~~~f 119 (292)
T 2ojp_A 103 VTP-YYNRPSQEGLYQHF 119 (292)
T ss_dssp ECC-CSSCCCHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHH
Confidence 466 44889999999987
Done!