BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>045648
MKERASVIDGTLKFTAMKIEAKHISFCPSRLLHFISGVVVASLDRRRYRFISNVAGEEID
SVGTVDPVNVMSKWRKYWPADIILVGPTKEPEKPKEEPKKEEPKKREVAKKEEPKRIEGN
PYLTTHYHVQSIEENPNACVIC

High Scoring Gene Products

Symbol, full name Information P value
AT1G01490 protein from Arabidopsis thaliana 2.3e-17

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  045648
        (142 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2025421 - symbol:AT1G01490 species:3702 "Arabi...   114  2.3e-17   2


>TAIR|locus:2025421 [details] [associations]
            symbol:AT1G01490 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0030001 "metal ion
            transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA;ISS] InterPro:IPR006121 Pfam:PF00403 EMBL:CP002684
            GO:GO:0046872 GO:GO:0030001 EMBL:AY063805 EMBL:AY091276 EMBL:Y10084
            IPI:IPI00534476 RefSeq:NP_001030928.1 RefSeq:NP_171656.1
            UniGene:At.27454 ProteinModelPortal:O03982 PaxDb:O03982
            PRIDE:O03982 EnsemblPlants:AT1G01490.1 EnsemblPlants:AT1G01490.2
            GeneID:839440 KEGG:ath:AT1G01490 TAIR:At1g01490 eggNOG:NOG282717
            InParanoid:O03982 OMA:TYYYAQS PhylomeDB:O03982
            ProtClustDB:CLSN2912783 ArrayExpress:O03982 Genevestigator:O03982
            Uniprot:O03982
        Length = 177

 Score = 114 (45.2 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
 Identities = 21/32 (65%), Positives = 27/32 (84%)

Query:    57 EEIDSVGTVDPVNVMSKWRKYWP-ADIILVGP 87
             +++  +GTVDPVNV+SK RKYWP  DI+LVGP
Sbjct:    39 KKLTVIGTVDPVNVVSKLRKYWPMTDIVLVGP 70

 Score = 112 (44.5 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
 Identities = 19/23 (82%), Positives = 22/23 (95%)

Query:   120 NPYLTTHYHVQSIEENPNACVIC 142
             NP+LTT+Y+ QSIEENPNACVIC
Sbjct:   155 NPHLTTYYYAQSIEENPNACVIC 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      142       115   0.00091  102 3  11 22  0.44    30
                                                     29  0.45    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  132 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.15u 0.13s 10.28t   Elapsed:  00:00:01
  Total cpu time:  10.15u 0.13s 10.28t   Elapsed:  00:00:01
  Start:  Thu May  9 22:17:22 2013   End:  Thu May  9 22:17:23 2013

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