BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045648
         (142 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PTR|B Chain B, Phf2 Jumonji Domain
 pdb|3PU3|A Chain A, Phf2 Jumonji Domain-Nog Complex
 pdb|3PU3|B Chain B, Phf2 Jumonji Domain-Nog Complex
 pdb|3PU8|B Chain B, Phf2 Jumonji-Nog-Fe(Ii) Complex
 pdb|3PU8|A Chain A, Phf2 Jumonji-Nog-Fe(Ii) Complex
 pdb|3PUA|A Chain A, Phf2 Jumonji-Nog-Ni(Ii)
 pdb|3PUS|A Chain A, Phf2 Jumonji-Nog-Ni(Ii)
 pdb|3PUS|B Chain B, Phf2 Jumonji-Nog-Ni(Ii)
          Length = 392

 Score = 28.1 bits (61), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 27  CPSRLLHFISGVVVASLDRRRYRFISNVAGEEIDSVGTVDPVNVMSK--W-RKYWPADII 83
           C  +L  F+      S +R+R   ++N+   +      V+P +++ K  W   YWP D +
Sbjct: 111 CKMKLKEFVD--YYYSTNRKRVLNVTNLEFSDTRMSSFVEPPDIVKKLSWVENYWPDDAL 168

Query: 84  LVGP 87
           L  P
Sbjct: 169 LAKP 172


>pdb|2YRI|A Chain A, Crystal Structure Of Alanine-pyruvate Aminotransferase
           With 2- Methylserine
 pdb|2YRI|B Chain B, Crystal Structure Of Alanine-pyruvate Aminotransferase
           With 2- Methylserine
 pdb|2YRR|A Chain A, Hypothetical Alanine Aminotransferase (Tth0173) From
           Thermus Thermophilus Hb8
 pdb|2YRR|B Chain B, Hypothetical Alanine Aminotransferase (Tth0173) From
           Thermus Thermophilus Hb8
          Length = 353

 Score = 27.3 bits (59), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 38  VVVASLDRRRYRFISNVAGEEIDSVGTVDPVNVMSKWRK 76
            V  +L RRRYR ++ V GE   S G ++P   +    K
Sbjct: 115 AVARALKRRRYRMVALVHGE--TSTGVLNPAEAIGALAK 151


>pdb|1SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With Dana
 pdb|1SLL|A Chain A, Sialidase L From Leech Macrobdella Decora
 pdb|2SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With 2,7-
           Anhydro-Neu5ac, The Reaction Product
 pdb|3SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With 2,7-
           Anhydro-Neu5ac Prepared By Soaking With 3'-Sialyllactose
 pdb|4SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With 2-
           Propenyl-Neu5ac, An Inactive Substrate Analogue
          Length = 679

 Score = 26.9 bits (58), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 22/29 (75%), Gaps = 2/29 (6%)

Query: 34  FISGVVVASLDRRRYRFISNVAGEEIDSV 62
           F +G ++A+LD+  ++FIS++ G  +D+V
Sbjct: 127 FANGELLATLDKDAFKFISDITG--VDNV 153


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,387,190
Number of Sequences: 62578
Number of extensions: 92212
Number of successful extensions: 184
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 3
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)