BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045648
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O61345|PEN_DROME Protein penguin OS=Drosophila melanogaster GN=pen PE=2 SV=1
Length = 737
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 4 RASVIDGTLKFTAMKIEAKHISFCPSRLLHFISGVVVASLDRRRYRFISNVAGEEIDS 61
RA + + L FT ++K+ FC R+L + + A L Y I +AG I S
Sbjct: 197 RAEISEKLLPFTVEMCQSKYAQFCVQRMLKYGAPATKAKLVDSLYGHIVRLAGHSIGS 254
>sp|P59203|MALA_STRPN Maltodextrose utilization protein MalA OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=malA PE=4
SV=1
Length = 266
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 1 MKERASVIDGTLKFTAMKIEAKHISFCPSRL--------LHFISGVVVAS-----LDRRR 47
+ E A+++DGTL +T +A + PS++ LHF + +V S L R
Sbjct: 76 LSEHATIVDGTLTYTGTASQAPSVVIGPSQIKELPKDLQLHFDTNELVISKESKELTRIS 135
Query: 48 YRFISNVAGEEIDSV 62
YR I + + DS+
Sbjct: 136 YRAIQTESFKSKDSL 150
>sp|E1B7L7|UBN2_BOVIN Ubinuclein-2 OS=Bos taurus GN=UBN2 PE=3 SV=1
Length = 1330
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 86 GPTKEPEKPKEEPKKEEPKKREVAKKEEPKRIEGNP 121
G +EPE P+E P+ E RE A+ E P E P
Sbjct: 24 GTEREPEYPREPPRLEPQPYREPARTEPPAPREVAP 59
>sp|P59204|MALA_STRR6 Maltodextrose utilization protein MalA OS=Streptococcus pneumoniae
(strain ATCC BAA-255 / R6) GN=malA PE=4 SV=1
Length = 266
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 1 MKERASVIDGTLKFTAMKIEAKHISFCPSRL--------LHFISGVVVAS-----LDRRR 47
+ E A+++DGTL +T +A + PS++ LHF + +V S L R
Sbjct: 76 LSEHATIVDGTLTYTGTASQAPSVVIGPSQIKELPKDLQLHFDTNELVISKESKELTRIS 135
Query: 48 YRFISNVAGEEIDSV 62
YR I + DS+
Sbjct: 136 YRAIQTEGFKSKDSL 150
>sp|Q9XIB6|PLRX2_ARATH Pollen-specific leucine-rich repeat extensin-like protein 2
OS=Arabidopsis thaliana GN=PEX2 PE=1 SV=1
Length = 847
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 86 GPTKEPEKPKEEPKKEEPKKREVAKKEEPK 115
P +P KP++ PK E+PK E K E+P+
Sbjct: 460 SPKPQPSKPEDSPKPEQPKPEESPKPEQPQ 489
>sp|Q80WC3|TNC18_MOUSE Trinucleotide repeat-containing gene 18 protein OS=Mus musculus
GN=Tnrc18 PE=1 SV=2
Length = 2878
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 83 ILVGPTKEPEKPKEEPKKEEPKKREVAKKEEPKRIEGNP 121
I + P+K PE P++ P++E+ REV K E + IE P
Sbjct: 1059 ICLSPSKIPEPPRDSPEEEQLADREV--KAEVEDIEEGP 1095
>sp|Q3UHF7|ZEP2_MOUSE Transcription factor HIVEP2 OS=Mus musculus GN=Hivep2 PE=1 SV=1
Length = 2430
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 86 GPTKEPEKPKEE---PKKEEPKKREVAKKEEPKR 116
PTKEPEKP EE P++ E + A+K PK+
Sbjct: 898 APTKEPEKPVEEFQWPQRSETLSQLPAEKLPPKK 931
>sp|Q00900|ZEP2_RAT Human immunodeficiency virus type I enhancer-binding protein 2
homolog OS=Rattus norvegicus GN=Hivep2 PE=2 SV=2
Length = 2437
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 86 GPTKEPEKPKEE---PKKEEPKKREVAKKEEPKR 116
PTKEPEKP EE P++ E + A+K PK+
Sbjct: 903 APTKEPEKPVEEFQWPQRSETLSQLPAEKLPPKK 936
>sp|A9A5I4|RL24_NITMS 50S ribosomal protein L24P OS=Nitrosopumilus maritimus (strain
SCM1) GN=rpl24p PE=3 SV=1
Length = 168
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Query: 65 VDPVNVMSKWRKYWPADIILVGPTKEP-------EKP-KEEPKKEEPKKREVAKKEEP 114
V +N KWR A + P K+P EKP KEEPKKE PK E KEEP
Sbjct: 98 VTSLNTEDKWR---IAKLEGKDPRKQPKEAPKAAEKPAKEEPKKETPKAEEKPAKEEP 152
>sp|B9EBE9|IF2_MACCJ Translation initiation factor IF-2 OS=Macrococcus caseolyticus
(strain JCSC5402) GN=infB PE=3 SV=1
Length = 726
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 89 KEPEKPKEEPKKEEPKKREVAKKEEPKRIEGN 120
++ E KEEP KE+PKK E K+ + KR + N
Sbjct: 63 QKAEAKKEEPNKEQPKKEEPKKQSDQKRPQNN 94
>sp|A6UQ84|APGM_METVS 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM
1224) GN=apgM PE=3 SV=1
Length = 406
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 44 DRRRYRF-ISNVAGEEIDSVGTVDPVNVMSKWRKYWPADIILVGPTKEPEKPKEEPKKEE 102
DRR R +++ +E+D + +D V V+ K + A ++L GP + +PKKE
Sbjct: 107 DRRAGRIEDTSLLEKELDGL-KIDDVEVIFKESGGYRAALLLRGPNLSDKISDADPKKEG 165
Query: 103 PKKREVAKKEEPKRIE 118
K +E+ ++ K E
Sbjct: 166 KKVKEIIPLDDSKEAE 181
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,592,430
Number of Sequences: 539616
Number of extensions: 2338580
Number of successful extensions: 19517
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 17447
Number of HSP's gapped (non-prelim): 1844
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)