BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045649
(725 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 169/500 (33%), Positives = 237/500 (47%), Gaps = 34/500 (6%)
Query: 87 INLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGV 146
+++S L+G A S+ L LN+S N G IPP L LQYL L N+ TG
Sbjct: 228 LDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGE 284
Query: 147 IPQEI-GHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIP-PSLGNLSN 204
IP + G + L L N +G++PP G +L+ LAL NN G +P +L +
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344
Query: 205 LANFYLNNNSLFDSIPLVLGNLK-SLSTLDLSKNQLSG-LIPFSLGNLSN-LGILYLYSN 261
L L+ N +P L NL SL TLDLS N SG ++P N N L LYL +N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 262 SLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGN 321
+G IP + N L+ L LS N LSG+IP SLG+LS L + L+ N L G IP L
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 322 LKSLSALGLHINQLNGVIPASIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELDLCTN 381
+K+L L L N L G IP+ + +P+ IG L+++ L L N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 382 RLSGAIPHSISNLTELVLVNICENHFFGPIPKSL--------RNLTSLERVRFNQNNLSG 433
SG IP + + L+ +++ N F G IP ++ N + +R + +N+ G
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND--G 582
Query: 434 KVYEAFGYHPNLTF----------------LDFSQNNFYGEISFNWRNFPKLCTFNASMN 477
E G L F + + + G S + N + + S N
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642
Query: 478 NIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGS 537
+ G IP EIG + L +L+L N I G IP ++G L L L L+SN+L G IP + +
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Query: 538 LTELQYIDLSANKLRSWIPK 557
LT L IDLS N L IP+
Sbjct: 703 LTMLTEIDLSNNNLSGPIPE 722
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 151/478 (31%), Positives = 216/478 (45%), Gaps = 55/478 (11%)
Query: 87 INLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVG------------------ 128
++L+ G + +F + L L+LS N +G +PP G
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 129 -------NLSELQYLDLGSNQLTGVIPQEIGHLN-QLRSLYFDVNQLHGSIPPEIGQ--L 178
+ L+ LDL N+ +G +P+ + +L+ L +L N G I P + Q
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 179 NLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQ 238
N + EL L +N G IPP+L N S L + +L+ N L +IP LG+L L L L N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 239 LSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNL 298
L G IP L + L L L N L+G IPS + N +L + LS N+L+G IP +G L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 299 SSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXXXXXXXXXXXX 358
+L ++ L +NS SG IP LG+ +SL L L+ N NG IPA++
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 359 XXXFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNL 418
++ + G K H NL E F G + L L
Sbjct: 574 RYVYIKND-GMKKEC---------------HGAGNLLE----------FQGIRSEQLNRL 607
Query: 419 TSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNN 478
++ G F + ++ FLD S N G I + P L N N+
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667
Query: 479 IYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELG 536
I GSIP E+GDL L +LDLSSN + G IP + L LT++ L++N LSG IP E+G
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMG 724
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 199/727 (27%), Positives = 303/727 (41%), Gaps = 130/727 (17%)
Query: 60 VPSYSKAKLSPCAWVGISCNQAERVISINLSSMGLN------------------------ 95
+P +S K +PC + G++C + ++V SI+LSS LN
Sbjct: 30 LPDWSSNK-NPCTFDGVTC-RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS 87
Query: 96 ---GTLQEFAFSSFPHLVRLNLSFNIVFG--TIPPQVGNLSELQYLDLGSNQLTGVIPQE 150
G++ F S+ L L+LS N + G T +G+ S L++L++ SN L P +
Sbjct: 88 HINGSVSGFKCSA--SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGK 143
Query: 151 IG---HLNQLRSLYFDVNQLHGS------IPPEIGQLNLINELALCHNNLHGPIPPSLGN 201
+ LN L L N + G+ + G+L LA+ N + G + +
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK---HLAISGNKISGDV--DVSR 198
Query: 202 LSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSN 261
NL +++N+ IP LG+ +L LD+S N+LSG ++ + L +L + SN
Sbjct: 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 262 SLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSL-GNLSSLTVMSLFSNSLSGFIPPILG 320
G IP + LKSL L L+EN+ +G IP L G +LT + L N G +PP G
Sbjct: 258 QFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 321 -------------------------NLKSLSALGLHINQLNGVIPASIXXXXXXXXXXXX 355
++ L L L N+ +G +P S+
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 356 XXXXXX--FVPEEIGYLKSIF-ELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIP 412
+P K+ EL L N +G IP ++SN +ELV +++ N+ G IP
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 413 KSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTF 472
SL +L+ L ++ N L G++ + Y L L N+ GEI N L
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 473 NASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIP 532
+ S N + G IP IG L L +L LS+N G IP +LG SL L LN+N +G IP
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 533 LEL--------------------------------GSLTELQYIDLSA-NKLRSWIPKSI 559
+ G+L E Q I N+L + P +I
Sbjct: 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615
Query: 560 AXXX-------------XXXXXXXXXXQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQ 606
S IP E+ + +L L+L +N + +P +
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675
Query: 607 ICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS---TVFKDAHVE 663
+ +++ L L+L N L G IP+ + L+ ID+S N L GPIP F A
Sbjct: 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735
Query: 664 GNKGLCG 670
N GLCG
Sbjct: 736 NNPGLCG 742
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 169/500 (33%), Positives = 237/500 (47%), Gaps = 34/500 (6%)
Query: 87 INLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGV 146
+++S L+G A S+ L LN+S N G IPP L LQYL L N+ TG
Sbjct: 225 LDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGE 281
Query: 147 IPQEI-GHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIP-PSLGNLSN 204
IP + G + L L N +G++PP G +L+ LAL NN G +P +L +
Sbjct: 282 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 341
Query: 205 LANFYLNNNSLFDSIPLVLGNLK-SLSTLDLSKNQLSG-LIPFSLGNLSN-LGILYLYSN 261
L L+ N +P L NL SL TLDLS N SG ++P N N L LYL +N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 262 SLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGN 321
+G IP + N L+ L LS N LSG+IP SLG+LS L + L+ N L G IP L
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 322 LKSLSALGLHINQLNGVIPASIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELDLCTN 381
+K+L L L N L G IP+ + +P+ IG L+++ L L N
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 382 RLSGAIPHSISNLTELVLVNICENHFFGPIPKSL--------RNLTSLERVRFNQNNLSG 433
SG IP + + L+ +++ N F G IP ++ N + +R + +N+ G
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND--G 579
Query: 434 KVYEAFGYHPNLTF----------------LDFSQNNFYGEISFNWRNFPKLCTFNASMN 477
E G L F + + + G S + N + + S N
Sbjct: 580 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 639
Query: 478 NIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGS 537
+ G IP EIG + L +L+L N I G IP ++G L L L L+SN+L G IP + +
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 699
Query: 538 LTELQYIDLSANKLRSWIPK 557
LT L IDLS N L IP+
Sbjct: 700 LTMLTEIDLSNNNLSGPIPE 719
Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 151/478 (31%), Positives = 216/478 (45%), Gaps = 55/478 (11%)
Query: 87 INLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVG------------------ 128
++L+ G + +F + L L+LS N +G +PP G
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 129 -------NLSELQYLDLGSNQLTGVIPQEIGHLN-QLRSLYFDVNQLHGSIPPEIGQ--L 178
+ L+ LDL N+ +G +P+ + +L+ L +L N G I P + Q
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 179 NLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQ 238
N + EL L +N G IPP+L N S L + +L+ N L +IP LG+L L L L N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 239 LSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNL 298
L G IP L + L L L N L+G IPS + N +L + LS N+L+G IP +G L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 299 SSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXXXXXXXXXXXX 358
+L ++ L +NS SG IP LG+ +SL L L+ N NG IPA++
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Query: 359 XXXFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNL 418
++ + G K H NL E F G + L L
Sbjct: 571 RYVYIKND-GMKKEC---------------HGAGNLLE----------FQGIRSEQLNRL 604
Query: 419 TSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNN 478
++ G F + ++ FLD S N G I + P L N N+
Sbjct: 605 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 664
Query: 479 IYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELG 536
I GSIP E+GDL L +LDLSSN + G IP + L LT++ L++N LSG IP E+G
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMG 721
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 199/727 (27%), Positives = 303/727 (41%), Gaps = 130/727 (17%)
Query: 60 VPSYSKAKLSPCAWVGISCNQAERVISINLSSMGLN------------------------ 95
+P +S K +PC + G++C + ++V SI+LSS LN
Sbjct: 27 LPDWSSNK-NPCTFDGVTC-RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS 84
Query: 96 ---GTLQEFAFSSFPHLVRLNLSFNIVFG--TIPPQVGNLSELQYLDLGSNQLTGVIPQE 150
G++ F S+ L L+LS N + G T +G+ S L++L++ SN L P +
Sbjct: 85 HINGSVSGFKCSA--SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGK 140
Query: 151 IG---HLNQLRSLYFDVNQLHGS------IPPEIGQLNLINELALCHNNLHGPIPPSLGN 201
+ LN L L N + G+ + G+L LA+ N + G + +
Sbjct: 141 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK---HLAISGNKISGDV--DVSR 195
Query: 202 LSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSN 261
NL +++N+ IP LG+ +L LD+S N+LSG ++ + L +L + SN
Sbjct: 196 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
Query: 262 SLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSL-GNLSSLTVMSLFSNSLSGFIPPILG 320
G IP + LKSL L L+EN+ +G IP L G +LT + L N G +PP G
Sbjct: 255 QFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Query: 321 -------------------------NLKSLSALGLHINQLNGVIPASIXXXXXXXXXXXX 355
++ L L L N+ +G +P S+
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 356 XXXXXX--FVPEEIGYLKSIF-ELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIP 412
+P K+ EL L N +G IP ++SN +ELV +++ N+ G IP
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 432
Query: 413 KSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTF 472
SL +L+ L ++ N L G++ + Y L L N+ GEI N L
Sbjct: 433 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 492
Query: 473 NASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIP 532
+ S N + G IP IG L L +L LS+N G IP +LG SL L LN+N +G IP
Sbjct: 493 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Query: 533 LEL--------------------------------GSLTELQYIDLSA-NKLRSWIPKSI 559
+ G+L E Q I N+L + P +I
Sbjct: 553 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 612
Query: 560 AXXXXXXXXX-------------XXXXQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQ 606
S IP E+ + +L L+L +N + +P +
Sbjct: 613 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 672
Query: 607 ICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS---TVFKDAHVE 663
+ +++ L L+L N L G IP+ + L+ ID+S N L GPIP F A
Sbjct: 673 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 732
Query: 664 GNKGLCG 670
N GLCG
Sbjct: 733 NNPGLCG 739
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 133/277 (48%), Gaps = 36/277 (12%)
Query: 72 AWVGISCN---QAERVISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVG 128
W+G+ C+ Q RV +++LS + L +P IP +
Sbjct: 37 TWLGVLCDTDTQTYRVNNLDLSGLNLP--------KPYP---------------IPSSLA 73
Query: 129 NLSELQYLDLGS-NQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALC 187
NL L +L +G N L G IP I L QL LY + G+IP + Q+ + L
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 188 HNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSL-STLDLSKNQLSGLIPFS 246
+N L G +PPS+ +L NL + N + +IP G+ L +++ +S+N+L+G IP +
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 247 LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLS---GSIPLSLGNLSSLTV 303
NL NL + L N L G + G+ K+ ++ L++N L+ G + LS +L
Sbjct: 194 FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS----KNLNG 248
Query: 304 MSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIP 340
+ L +N + G +P L LK L +L + N L G IP
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 118/245 (48%), Gaps = 28/245 (11%)
Query: 171 IPPEIGQLNLINELALCH-NNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSL 229
IP + L +N L + NNL GPIPP++ L+ L Y+ + ++ +IP L +K+L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 230 STLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLL-QLDLSENQLS 288
TLD S N LSG +P S+ +L NL + N +SG IP G+ L + +S N+L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 289 GSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXX 348
G IP + NL +L + L N L G + G+ K+ + L N L
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL------------- 233
Query: 349 XXXXXXXXXXXXXFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFF 408
F ++G K++ LDL NR+ G +P ++ L L +N+ N+
Sbjct: 234 ------------AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 409 GPIPK 413
G IP+
Sbjct: 282 GEIPQ 286
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 111/259 (42%), Gaps = 32/259 (12%)
Query: 387 IPHSISNLTELVLVNICE-NHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNL 445
IP S++NL L + I N+ GPIP ++ LT L + N+SG + + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 446 TFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKL-QVLDLSSNHIV 504
LDFS N G + + + P L N I G+IP G SKL + +S N +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 505 GEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIAXXXX 564
G+IP L +L + L+ N L G + GS Q I L+ N L + K
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK------- 239
Query: 565 XXXXXXXXXQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLS 624
+ + K +L+ LDL N + +P + +K L LN+ NNL
Sbjct: 240 ----------------VGLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 625 GFIPRCFEGMHNLSHIDIS 643
G IP+ NL D+S
Sbjct: 282 GEIPQ----GGNLQRFDVS 296
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 116/274 (42%), Gaps = 33/274 (12%)
Query: 410 PIPKSLRNLTSLERVRFNQ-NNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPK 468
PIP SL NL L + NNL G + A L +L + N G I
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 469 LCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSL-TKLILNSNQL 527
L T + S N + G++P I L L + N I G IP G L T + ++ N+L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 528 SGGIPLELGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVEKLI 587
+G IP +L L ++DLS N L + +QKI
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEG-----------DASVLFGSDKNTQKI-------- 226
Query: 588 HLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL 647
HL++ L+++ ++ K+L L+L +N + G +P+ + L +++S+N L
Sbjct: 227 HLAKNSLAFDL------GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 648 QGPIP---NSTVFKDAHVEGNKGLCGNVNGFPSC 678
G IP N F + NK LCG+ P+C
Sbjct: 281 CGEIPQGGNLQRFDVSAYANNKCLCGSP--LPAC 312
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 3/181 (1%)
Query: 381 NRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFG 440
N L G IP +I+ LT+L + I + G IP L + +L + F+ N LSG + +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 441 YHPNLTFLDFSQNNFYGEISFNWRNFPKLCT-FNASMNNIYGSIPTEIGDLSKLQVLDLS 499
PNL + F N G I ++ +F KL T S N + G IP +L+ L +DLS
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205
Query: 500 SNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSI 559
N + G+ V G + K+ L N L+ + ++G L +DL N++ +P+ +
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 560 A 560
Sbjct: 265 T 265
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 3/196 (1%)
Query: 363 VPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLE 422
+P I L + L + +SGAIP +S + LV ++ N G +P S+ +L +L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 423 RVRFNQNNLSGKVYEAFGYHPNL-TFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYG 481
+ F+ N +SG + +++G L T + S+N G+I + N L + S N + G
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG 211
Query: 482 SIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTEL 541
G Q + L+ N + ++ ++G +L L L +N++ G +P L L L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 542 QYIDLSANKLRSWIPK 557
+++S N L IP+
Sbjct: 271 HSLNVSFNNLCGEIPQ 286
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 98/332 (29%), Positives = 152/332 (45%), Gaps = 38/332 (11%)
Query: 130 LSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFD---VNQLHGSIPPEIGQLNLINELAL 186
L+E LG +T + Q L+Q+ +L D + + G + LN + ++
Sbjct: 18 LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINF 70
Query: 187 CHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFS 246
+N L P L NL+ L + +NNN + D P L NL +L+ L L NQ++ + P
Sbjct: 71 SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-- 124
Query: 247 LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSL 306
L NL+NL L L SN++S S + L SL QL+ S NQ++ P L NL++L + +
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDI 180
Query: 307 FSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXXXXXXXXXXXXXXXFVPEE 366
SN +S +L L +L +L NQ++ + P I ++
Sbjct: 181 SSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL-------KD 231
Query: 367 IGYLKS---IFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLER 423
IG L S + +LDL N++S P +S LT+L + + N P L LT+L
Sbjct: 232 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 287
Query: 424 VRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNF 455
+ N+N L NLT+L NN
Sbjct: 288 LELNENQLED--ISPISNLKNLTYLTLYFNNI 317
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 120/237 (50%), Gaps = 20/237 (8%)
Query: 103 FSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYF 162
+ +L RL LS N + + L+ LQ L+ SNQ+T + P + +L L L
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDI 180
Query: 163 DVNQLHG-SIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPL 221
N++ S+ ++ L E + NN I P LG L+NL LN N L D
Sbjct: 181 SSNKVSDISVLAKLTNL----ESLIATNNQISDITP-LGILTNLDELSLNGNQLKD--IG 233
Query: 222 VLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLD 281
L +L +L+ LDL+ NQ+S L P S L+ L L L +N +S P + L +L L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 282 LSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGV 338
L+ENQL P+S NL +LT ++L+ N++S P + +L L L + N+++ V
Sbjct: 290 LNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV 342
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 110/220 (50%), Gaps = 24/220 (10%)
Query: 127 VGNLSELQYLDLGSNQLTGVIP-QEIGHLNQLR---SLYFDVNQLHGSIPPEIGQLNLIN 182
+ NL+ L L L +NQ+T + P + + +LN+L + D++ L G L +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG--------LTSLQ 154
Query: 183 ELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGL 242
+L N + P L NL+ L +++N + D VL L +L +L + NQ+S +
Sbjct: 155 QLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDI 210
Query: 243 IPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLT 302
P LG L+NL L L N L + +L +L LDL+ NQ+S PLS L+ LT
Sbjct: 211 TP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLT 264
Query: 303 VMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPAS 342
+ L +N +S P L L +L+ L L+ NQL + P S
Sbjct: 265 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 302
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 126/284 (44%), Gaps = 38/284 (13%)
Query: 365 EEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERV 424
+ + YL ++ +++ N+L+ P + NLT+LV + + N P L NLT+L +
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 425 RFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIP 484
N ++ + NL L+ S N +IS L N S N + P
Sbjct: 113 TLFNNQITD--IDPLKNLTNLNRLELSSNTI-SDISA-LSGLTSLQQLNFSSNQVTDLKP 168
Query: 485 TEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPL----------- 533
+ +L+ L+ LD+SSN V +I V L KL +L LI +NQ+S PL
Sbjct: 169 --LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSL 224
Query: 534 ---------ELGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVE 584
L SLT L +DL+ N++ + P ++ Q S P+
Sbjct: 225 NGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA-- 280
Query: 585 KLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIP 628
L L+ L+L+ N L++ P I N+K+L L L NN+S P
Sbjct: 281 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 98/332 (29%), Positives = 151/332 (45%), Gaps = 38/332 (11%)
Query: 130 LSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFD---VNQLHGSIPPEIGQLNLINELAL 186
L+E LG +T + Q L+Q+ +L D + + G + LN + ++
Sbjct: 18 LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINF 70
Query: 187 CHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFS 246
+N L P L NL+ L + +NNN + D P L NL +L+ L L NQ++ + P
Sbjct: 71 SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-- 124
Query: 247 LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSL 306
L NL+NL L L SN++S S + L SL QL S NQ++ P L NL++L + +
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDI 180
Query: 307 FSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXXXXXXXXXXXXXXXFVPEE 366
SN +S +L L +L +L NQ++ + P I ++
Sbjct: 181 SSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL-------KD 231
Query: 367 IGYLKS---IFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLER 423
IG L S + +LDL N++S P +S LT+L + + N P L LT+L
Sbjct: 232 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 287
Query: 424 VRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNF 455
+ N+N L NLT+L NN
Sbjct: 288 LELNENQLED--ISPISNLKNLTYLTLYFNNI 317
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 108/215 (50%), Gaps = 18/215 (8%)
Query: 103 FSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYF 162
+ +L RL LS N + + L+ LQ L SNQ+T + P + +L L L
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDI 180
Query: 163 DVNQLHG-SIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPL 221
N++ S+ ++ L E + NN I P LG L+NL LN N L D
Sbjct: 181 SSNKVSDISVLAKLTNL----ESLIATNNQISDITP-LGILTNLDELSLNGNQLKD--IG 233
Query: 222 VLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLD 281
L +L +L+ LDL+ NQ+S L P S L+ L L L +N +S P + L +L L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 282 LSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIP 316
L+ENQL P+S NL +LT ++L+ N++S P
Sbjct: 290 LNENQLEDISPIS--NLKNLTYLTLYFNNISDISP 322
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 111/220 (50%), Gaps = 24/220 (10%)
Query: 127 VGNLSELQYLDLGSNQLTGVIP-QEIGHLNQLR---SLYFDVNQLHGSIPPEIGQLNLIN 182
+ NL+ L L L +NQ+T + P + + +LN+L + D++ L G L +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG--------LTSLQ 154
Query: 183 ELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGL 242
+L+ N + P L NL+ L +++N + D VL L +L +L + NQ+S +
Sbjct: 155 QLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDI 210
Query: 243 IPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLT 302
P LG L+NL L L N L + +L +L LDL+ NQ+S PLS L+ LT
Sbjct: 211 TP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLT 264
Query: 303 VMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPAS 342
+ L +N +S P L L +L+ L L+ NQL + P S
Sbjct: 265 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 302
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 126/284 (44%), Gaps = 38/284 (13%)
Query: 365 EEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERV 424
+ + YL ++ +++ N+L+ P + NLT+LV + + N P L NLT+L +
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 425 RFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIP 484
N ++ + NL L+ S N +IS L + S N + P
Sbjct: 113 TLFNNQITD--IDPLKNLTNLNRLELSSNTI-SDISA-LSGLTSLQQLSFSSNQVTDLKP 168
Query: 485 TEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPL----------- 533
+ +L+ L+ LD+SSN V +I V L KL +L LI +NQ+S PL
Sbjct: 169 --LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSL 224
Query: 534 ---------ELGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVE 584
L SLT L +DL+ N++ + P ++ Q S P+
Sbjct: 225 NGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA-- 280
Query: 585 KLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIP 628
L L+ L+L+ N L++ P I N+K+L L L NN+S P
Sbjct: 281 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 98/332 (29%), Positives = 151/332 (45%), Gaps = 38/332 (11%)
Query: 130 LSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFD---VNQLHGSIPPEIGQLNLINELAL 186
L+E LG +T + Q L+Q+ +L D + + G + LN + ++
Sbjct: 18 LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINF 70
Query: 187 CHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFS 246
+N L P L NL+ L + +NNN + D P L NL +L+ L L NQ++ + P
Sbjct: 71 SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-- 124
Query: 247 LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSL 306
L NL+NL L L SN++S S + L SL QL S NQ++ P L NL++L + +
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDI 180
Query: 307 FSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXXXXXXXXXXXXXXXFVPEE 366
SN +S +L L +L +L NQ++ + P I ++
Sbjct: 181 SSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL-------KD 231
Query: 367 IGYLKS---IFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLER 423
IG L S + +LDL N++S P +S LT+L + + N P L LT+L
Sbjct: 232 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 287
Query: 424 VRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNF 455
+ N+N L NLT+L NN
Sbjct: 288 LELNENQLED--ISPISNLKNLTYLTLYFNNI 317
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 119/237 (50%), Gaps = 20/237 (8%)
Query: 103 FSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYF 162
+ +L RL LS N + + L+ LQ L SNQ+T + P + +L L L
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDI 180
Query: 163 DVNQLHG-SIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPL 221
N++ S+ ++ L E + NN I P LG L+NL LN N L D
Sbjct: 181 SSNKVSDISVLAKLTNL----ESLIATNNQISDITP-LGILTNLDELSLNGNQLKD--IG 233
Query: 222 VLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLD 281
L +L +L+ LDL+ NQ+S L P S L+ L L L +N +S P + L +L L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 282 LSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGV 338
L+ENQL P+S NL +LT ++L+ N++S P + +L L L + N+++ V
Sbjct: 290 LNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV 342
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 111/220 (50%), Gaps = 24/220 (10%)
Query: 127 VGNLSELQYLDLGSNQLTGVIP-QEIGHLNQLR---SLYFDVNQLHGSIPPEIGQLNLIN 182
+ NL+ L L L +NQ+T + P + + +LN+L + D++ L G L +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG--------LTSLQ 154
Query: 183 ELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGL 242
+L+ N + P L NL+ L +++N + D VL L +L +L + NQ+S +
Sbjct: 155 QLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDI 210
Query: 243 IPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLT 302
P LG L+NL L L N L + +L +L LDL+ NQ+S PLS L+ LT
Sbjct: 211 TP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLT 264
Query: 303 VMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPAS 342
+ L +N +S P L L +L+ L L+ NQL + P S
Sbjct: 265 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 302
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 126/284 (44%), Gaps = 38/284 (13%)
Query: 365 EEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERV 424
+ + YL ++ +++ N+L+ P + NLT+LV + + N P L NLT+L +
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 425 RFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIP 484
N ++ + NL L+ S N +IS L + S N + P
Sbjct: 113 TLFNNQITD--IDPLKNLTNLNRLELSSNTI-SDISA-LSGLTSLQQLSFSSNQVTDLKP 168
Query: 485 TEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPL----------- 533
+ +L+ L+ LD+SSN V +I V L KL +L LI +NQ+S PL
Sbjct: 169 --LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSL 224
Query: 534 ---------ELGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVE 584
L SLT L +DL+ N++ + P ++ Q S P+
Sbjct: 225 NGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA-- 280
Query: 585 KLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIP 628
L L+ L+L+ N L++ P I N+K+L L L NN+S P
Sbjct: 281 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 152/332 (45%), Gaps = 39/332 (11%)
Query: 130 LSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFD---VNQLHGSIPPEIGQLNLINELAL 186
L+E LG +T + Q L+Q+ +L D + + G + LN + ++
Sbjct: 18 LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINF 70
Query: 187 CHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFS 246
+N L P L NL+ L + +NNN + D P L NL +L+ L L NQ++ + P
Sbjct: 71 SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-- 124
Query: 247 LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSL 306
L NL+NL L L SN++S S + L SL QL+ NQ++ PL+ NL++L + +
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKPLA--NLTTLERLDI 179
Query: 307 FSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXXXXXXXXXXXXXXXFVPEE 366
SN +S +L L +L +L NQ++ + P I ++
Sbjct: 180 SSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL-------KD 230
Query: 367 IGYLKS---IFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLER 423
IG L S + +LDL N++S P +S LT+L + + N P L LT+L
Sbjct: 231 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 286
Query: 424 VRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNF 455
+ N+N L NLT+L NN
Sbjct: 287 LELNENQLED--ISPISNLKNLTYLTLYFNNI 316
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 120/237 (50%), Gaps = 21/237 (8%)
Query: 103 FSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYF 162
+ +L RL LS N + + L+ LQ L+ G NQ+T + P + +L L L
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDI 179
Query: 163 DVNQLHG-SIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPL 221
N++ S+ ++ L E + NN I P LG L+NL LN N L D
Sbjct: 180 SSNKVSDISVLAKLTNL----ESLIATNNQISDITP-LGILTNLDELSLNGNQLKD--IG 232
Query: 222 VLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLD 281
L +L +L+ LDL+ NQ+S L P S L+ L L L +N +S P + L +L L+
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 282 LSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGV 338
L+ENQL P+S NL +LT ++L+ N++S P + +L L L + N+++ V
Sbjct: 289 LNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV 341
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 112/220 (50%), Gaps = 25/220 (11%)
Query: 127 VGNLSELQYLDLGSNQLTGVIP-QEIGHLNQLR---SLYFDVNQLHGSIPPEIGQLNLIN 182
+ NL+ L L L +NQ+T + P + + +LN+L + D++ L G + QLN N
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT--SLQQLNFGN 160
Query: 183 ELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGL 242
++ + P L NL+ L +++N + D VL L +L +L + NQ+S +
Sbjct: 161 QVT--------DLKP-LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDI 209
Query: 243 IPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLT 302
P LG L+NL L L N L + +L +L LDL+ NQ+S PLS L+ LT
Sbjct: 210 TP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLT 263
Query: 303 VMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPAS 342
+ L +N +S P L L +L+ L L+ NQL + P S
Sbjct: 264 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 301
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 127/287 (44%), Gaps = 45/287 (15%)
Query: 365 EEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERV 424
+ + YL ++ +++ N+L+ P + NLT+LV + + N P L NLT+L +
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 425 RFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIP 484
N ++ + NL L+ S N +IS L N +G+
Sbjct: 113 TLFNNQITD--IDPLKNLTNLNRLELSSNTI-SDISA-LSGLTSLQQLN------FGNQV 162
Query: 485 TEI---GDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPL-------- 533
T++ +L+ L+ LD+SSN V +I V L KL +L LI +NQ+S PL
Sbjct: 163 TDLKPLANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDE 220
Query: 534 ------------ELGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPI 581
L SLT L +DL+ N++ + P ++ Q S P+
Sbjct: 221 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 278
Query: 582 EVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIP 628
L L+ L+L+ N L++ P I N+K+L L L NN+S P
Sbjct: 279 A--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 151/332 (45%), Gaps = 39/332 (11%)
Query: 130 LSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFD---VNQLHGSIPPEIGQLNLINELAL 186
L+E LG +T + Q L+Q+ +L D + + G + LN + ++
Sbjct: 18 LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINF 70
Query: 187 CHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFS 246
+N L P L NL+ L + +NNN + D P L NL +L+ L L NQ++ + P
Sbjct: 71 SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-- 124
Query: 247 LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSL 306
L NL+NL L L SN++S S + L SL QL+ NQ++ P L NL++L + +
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDI 179
Query: 307 FSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXXXXXXXXXXXXXXXFVPEE 366
SN +S +L L +L +L NQ++ + P I ++
Sbjct: 180 SSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL-------KD 230
Query: 367 IGYLKS---IFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLER 423
IG L S + +LDL N++S P +S LT+L + + N P L LT+L
Sbjct: 231 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 286
Query: 424 VRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNF 455
+ N+N L NLT+L NN
Sbjct: 287 LELNENQLED--ISPISNLKNLTYLTLYFNNI 316
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 109/215 (50%), Gaps = 19/215 (8%)
Query: 103 FSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYF 162
+ +L RL LS N + + L+ LQ L+ G NQ+T + P + +L L L
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDI 179
Query: 163 DVNQLHG-SIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPL 221
N++ S+ ++ L E + NN I P LG L+NL LN N L D
Sbjct: 180 SSNKVSDISVLAKLTNL----ESLIATNNQISDITP-LGILTNLDELSLNGNQLKD--IG 232
Query: 222 VLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLD 281
L +L +L+ LDL+ NQ+S L P S L+ L L L +N +S P + L +L L+
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 282 LSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIP 316
L+ENQL P+S NL +LT ++L+ N++S P
Sbjct: 289 LNENQLEDISPIS--NLKNLTYLTLYFNNISDISP 321
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 112/220 (50%), Gaps = 25/220 (11%)
Query: 127 VGNLSELQYLDLGSNQLTGVIP-QEIGHLNQLR---SLYFDVNQLHGSIPPEIGQLNLIN 182
+ NL+ L L L +NQ+T + P + + +LN+L + D++ L G + QLN N
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT--SLQQLNFGN 160
Query: 183 ELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGL 242
++ + P L NL+ L +++N + D VL L +L +L + NQ+S +
Sbjct: 161 QVT--------DLKP-LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDI 209
Query: 243 IPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLT 302
P LG L+NL L L N L + +L +L LDL+ NQ+S PLS L+ LT
Sbjct: 210 TP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLT 263
Query: 303 VMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPAS 342
+ L +N +S P L L +L+ L L+ NQL + P S
Sbjct: 264 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 301
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 127/287 (44%), Gaps = 45/287 (15%)
Query: 365 EEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERV 424
+ + YL ++ +++ N+L+ P + NLT+LV + + N P L NLT+L +
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 425 RFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIP 484
N ++ + NL L+ S N +IS L N +G+
Sbjct: 113 TLFNNQITD--IDPLKNLTNLNRLELSSNTI-SDISA-LSGLTSLQQLN------FGNQV 162
Query: 485 TEI---GDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPL-------- 533
T++ +L+ L+ LD+SSN V +I V L KL +L LI +NQ+S PL
Sbjct: 163 TDLKPLANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDE 220
Query: 534 ------------ELGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPI 581
L SLT L +DL+ N++ + P ++ Q S P+
Sbjct: 221 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 278
Query: 582 EVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIP 628
L L+ L+L+ N L++ P I N+K+L L L NN+S P
Sbjct: 279 A--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 151/332 (45%), Gaps = 39/332 (11%)
Query: 130 LSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFD---VNQLHGSIPPEIGQLNLINELAL 186
L+E LG +T + Q L+Q+ +L D + + G + LN + ++
Sbjct: 23 LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINF 75
Query: 187 CHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFS 246
+N L P L NL+ L + +NNN + D P L NL +L+ L L NQ++ + P
Sbjct: 76 SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-- 129
Query: 247 LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSL 306
L NL+NL L L SN++S S + L SL QL NQ++ PL+ NL++L + +
Sbjct: 130 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKPLA--NLTTLERLDI 184
Query: 307 FSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXXXXXXXXXXXXXXXFVPEE 366
SN +S +L L +L +L NQ++ + P I ++
Sbjct: 185 SSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL-------KD 235
Query: 367 IGYLKS---IFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLER 423
IG L S + +LDL N++S P +S LT+L + + N P L LT+L
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 291
Query: 424 VRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNF 455
+ N+N L NLT+L NN
Sbjct: 292 LELNENQLED--ISPISNLKNLTYLTLYFNNI 321
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 119/237 (50%), Gaps = 21/237 (8%)
Query: 103 FSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYF 162
+ +L RL LS N + + L+ LQ L G NQ+T + P + +L L L
Sbjct: 130 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDI 184
Query: 163 DVNQLHG-SIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPL 221
N++ S+ ++ L E + NN I P LG L+NL LN N L D
Sbjct: 185 SSNKVSDISVLAKLTNL----ESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-- 237
Query: 222 VLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLD 281
L +L +L+ LDL+ NQ+S L P S L+ L L L +N +S P + L +L L+
Sbjct: 238 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 293
Query: 282 LSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGV 338
L+ENQL P+S NL +LT ++L+ N++S P + +L L L + N+++ V
Sbjct: 294 LNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV 346
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 110/218 (50%), Gaps = 21/218 (9%)
Query: 127 VGNLSELQYLDLGSNQLTGVIP-QEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINEL- 184
+ NL+ L L L +NQ+T + P + + +LN+L +L + +I L+ + L
Sbjct: 108 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL--------ELSSNTISDISALSGLTSLQ 159
Query: 185 ALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIP 244
L N + P L NL+ L +++N + D VL L +L +L + NQ+S + P
Sbjct: 160 QLSFGNQVTDLKP-LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP 216
Query: 245 FSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVM 304
LG L+NL L L N L + +L +L LDL+ NQ+S PLS L+ LT +
Sbjct: 217 --LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTEL 270
Query: 305 SLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPAS 342
L +N +S P L L +L+ L L+ NQL + P S
Sbjct: 271 KLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 306
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 125/284 (44%), Gaps = 39/284 (13%)
Query: 365 EEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERV 424
+ + YL ++ +++ N+L+ P + NLT+LV + + N P L NLT+L +
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117
Query: 425 RFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIP 484
N ++ + NL L+ S N + + + +F + ++
Sbjct: 118 TLFNNQITD--IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK---- 171
Query: 485 TEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPL----------- 533
+ +L+ L+ LD+SSN V +I V L KL +L LI +NQ+S PL
Sbjct: 172 -PLANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSL 228
Query: 534 ---------ELGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVE 584
L SLT L +DL+ N++ + P ++ Q S P+
Sbjct: 229 NGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA-- 284
Query: 585 KLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIP 628
L L+ L+L+ N L++ P I N+K+L L L NN+S P
Sbjct: 285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 151/332 (45%), Gaps = 39/332 (11%)
Query: 130 LSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFD---VNQLHGSIPPEIGQLNLINELAL 186
L+E LG +T + Q L+Q+ +L D + + G + LN + ++
Sbjct: 22 LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINF 74
Query: 187 CHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFS 246
+N L P L NL+ L + +NNN + D P L NL +L+ L L NQ++ + P
Sbjct: 75 SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-- 128
Query: 247 LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSL 306
L NL+NL L L SN++S S + L SL QL NQ++ PL+ NL++L + +
Sbjct: 129 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKPLA--NLTTLERLDI 183
Query: 307 FSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXXXXXXXXXXXXXXXFVPEE 366
SN +S +L L +L +L NQ++ + P I ++
Sbjct: 184 SSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL-------KD 234
Query: 367 IGYLKS---IFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLER 423
IG L S + +LDL N++S P +S LT+L + + N P L LT+L
Sbjct: 235 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 290
Query: 424 VRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNF 455
+ N+N L NLT+L NN
Sbjct: 291 LELNENQLED--ISPISNLKNLTYLTLYFNNI 320
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 108/215 (50%), Gaps = 19/215 (8%)
Query: 103 FSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYF 162
+ +L RL LS N + + L+ LQ L G NQ+T + P + +L L L
Sbjct: 129 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDI 183
Query: 163 DVNQLHG-SIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPL 221
N++ S+ ++ L E + NN I P LG L+NL LN N L D
Sbjct: 184 SSNKVSDISVLAKLTNL----ESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-- 236
Query: 222 VLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLD 281
L +L +L+ LDL+ NQ+S L P S L+ L L L +N +S P + L +L L+
Sbjct: 237 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 292
Query: 282 LSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIP 316
L+ENQL P+S NL +LT ++L+ N++S P
Sbjct: 293 LNENQLEDISPIS--NLKNLTYLTLYFNNISDISP 325
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 110/218 (50%), Gaps = 21/218 (9%)
Query: 127 VGNLSELQYLDLGSNQLTGVIP-QEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINEL- 184
+ NL+ L L L +NQ+T + P + + +LN+L +L + +I L+ + L
Sbjct: 107 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL--------ELSSNTISDISALSGLTSLQ 158
Query: 185 ALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIP 244
L N + P L NL+ L +++N + D VL L +L +L + NQ+S + P
Sbjct: 159 QLSFGNQVTDLKP-LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP 215
Query: 245 FSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVM 304
LG L+NL L L N L + +L +L LDL+ NQ+S PLS L+ LT +
Sbjct: 216 --LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTEL 269
Query: 305 SLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPAS 342
L +N +S P L L +L+ L L+ NQL + P S
Sbjct: 270 KLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 305
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 125/284 (44%), Gaps = 39/284 (13%)
Query: 365 EEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERV 424
+ + YL ++ +++ N+L+ P + NLT+LV + + N P L NLT+L +
Sbjct: 61 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 116
Query: 425 RFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIP 484
N ++ + NL L+ S N + + + +F + ++
Sbjct: 117 TLFNNQITD--IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK---- 170
Query: 485 TEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPL----------- 533
+ +L+ L+ LD+SSN V +I V L KL +L LI +NQ+S PL
Sbjct: 171 -PLANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSL 227
Query: 534 ---------ELGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVE 584
L SLT L +DL+ N++ + P ++ Q S P+
Sbjct: 228 NGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA-- 283
Query: 585 KLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIP 628
L L+ L+L+ N L++ P I N+K+L L L NN+S P
Sbjct: 284 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 325
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 142/325 (43%), Gaps = 69/325 (21%)
Query: 130 LSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHN 189
L+ L+YL+L NQ+T + P + +L +L +LY N+ I +++
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK--------------ITDIS---- 104
Query: 190 NLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQ-LSGLIPFSLG 248
+L NL+NL YLN +++ D PL NL +L+L N LS L P S
Sbjct: 105 --------ALQNLTNLRELYLNEDNISDISPL--ANLTKXYSLNLGANHNLSDLSPLS-- 152
Query: 249 NLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFS 308
N + L L + + + P I NL L L L+ NQ+ PL+ +L+SL + +
Sbjct: 153 NXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLA--SLTSLHYFTAYV 208
Query: 309 NSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXXXXXXXXXXXXXXXFVPEEIG 368
N ++ P + N L++L + N++ + P +
Sbjct: 209 NQITDITP--VANXTRLNSLKIGNNKITDLSP--------------------------LA 240
Query: 369 YLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQ 428
L + L++ TN++S +++ +LT+L +N+ N L NL+ L + N
Sbjct: 241 NLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNN 296
Query: 429 NNLSGKVYEAFGYHPNLTFLDFSQN 453
N L + E G NLT L SQN
Sbjct: 297 NQLGNEDXEVIGGLTNLTTLFLSQN 321
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 127 VGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELAL 186
+ NL++L L L NQ+ + P + L L VNQ+ P + +N L +
Sbjct: 173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKI 228
Query: 187 CHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFS 246
+N + P L NLS L + N + D I V +L L L++ NQ+S +
Sbjct: 229 GNNKITDLSP--LANLSQLTWLEIGTNQISD-INAV-KDLTKLKXLNVGSNQISDI--SV 282
Query: 247 LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLS 294
L NLS L L+L +N L VIG L +L L LS+N ++ PL+
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLA 330
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 127/291 (43%), Gaps = 48/291 (16%)
Query: 82 ERVISI-------NLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIP----PQVGNL 130
E+V SI NL + LNG Q S +LV+L N+ GT + NL
Sbjct: 54 EKVASIQGIEYLTNLEYLNLNGN-QITDISPLSNLVKLT---NLYIGTNKITDISALQNL 109
Query: 131 SELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNN 190
+ L+ L L + ++ + P + +L + SL N + P + +N L + +
Sbjct: 110 TNLRELYLNEDNISDISP--LANLTKXYSLNLGANHNLSDLSP-LSNXTGLNYLTVTESK 166
Query: 191 LHGPIPPSLGNLSNLANFYLNNNSLFDSIPLV--------------------LGNLKSLS 230
+ P + NL++L + LN N + D PL + N L+
Sbjct: 167 VKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLN 224
Query: 231 TLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSG- 289
+L + N+++ L P L NLS L L + +N +S + + +L L L++ NQ+S
Sbjct: 225 SLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQISDI 280
Query: 290 SIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIP 340
S+ L NLS L + L +N L ++G L +L+ L L N + + P
Sbjct: 281 SV---LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 138/332 (41%), Gaps = 69/332 (20%)
Query: 226 LKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSEN 285
L +L L+L+ NQ++ + P S NL L LY+ +N ++ S + NL +L +L L+E+
Sbjct: 65 LTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNED 120
Query: 286 QLSGSIPLSLGNLSSLTVMSLFSN-SLSGFIPPILGNLKSLSALGLHINQLNGVIPASIX 344
+S PL+ NL+ ++L +N +LS P L N L+ L + +++ V P
Sbjct: 121 NISDISPLA--NLTKXYSLNLGANHNLSDLSP--LSNXTGLNYLTVTESKVKDVTP---- 172
Query: 345 XXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICE 404
I L ++ L L N++ P +++LT L
Sbjct: 173 ----------------------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV 208
Query: 405 NHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWR 464
N P + N T L ++ N ++ LT+L+ N
Sbjct: 209 NQITDITP--VANXTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTN----------- 253
Query: 465 NFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNS 524
++ NA + DL+KL+ L++ SN I +I V L L L L LN+
Sbjct: 254 ---QISDINA------------VKDLTKLKXLNVGSNQI-SDISV-LNNLSQLNSLFLNN 296
Query: 525 NQLSGGIPLELGSLTELQYIDLSANKLRSWIP 556
NQL +G LT L + LS N + P
Sbjct: 297 NQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 2/180 (1%)
Query: 131 SELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEI-GQLNLINELALCHN 189
++ + LDL SN+L+ + + L +LR LY + N+L ++P I +L + L + N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95
Query: 190 NLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGN 249
L L NLA L+ N L P V +L L+ L L N+L L
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155
Query: 250 LSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSN 309
L++L L LY+N L L L L L NQL + +L L ++ L N
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 72/169 (42%), Gaps = 8/169 (4%)
Query: 171 IPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLS 230
IP + +L+L + N L + L+ L YLN+N L + LK+L
Sbjct: 35 IPADTKKLDLQS------NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88
Query: 231 TLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGS 290
TL ++ N+L L L NL L L N L P V +L L L L N+L S
Sbjct: 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-S 147
Query: 291 IPLSL-GNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGV 338
+P + L+SL + L++N L L L L L NQL V
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 29/198 (14%)
Query: 232 LDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSI 291
LDL N+LS L + L+ L +LYL N L + LK+L L +++N+L ++
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-AL 100
Query: 292 PLSL-GNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXXXX 350
P+ + L +L + L N L P + +L L+ L L N+L +P +
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGV------- 152
Query: 351 XXXXXXXXXXXFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGP 410
L S+ EL L N+L + LTEL + + +N+
Sbjct: 153 ----------------FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL-DNNQLKR 195
Query: 411 IPKSLRNLTSLERVRFNQ 428
+P+ SLE+++ Q
Sbjct: 196 VPEGA--FDSLEKLKMLQ 211
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 26/131 (19%)
Query: 519 KLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQK 578
KL L SN+LS LT+L+ + L+ NKL++ +P I Q
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQA 99
Query: 579 IPIEV-EKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNL 637
+PI V ++L++L+EL L N L PR F+ + L
Sbjct: 100 LPIGVFDQLVNLAELRLD------------------------RNQLKSLPPRVFDSLTKL 135
Query: 638 SHIDISYNELQ 648
+++ + YNELQ
Sbjct: 136 TYLSLGYNELQ 146
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 27/171 (15%)
Query: 477 NNIYGSIPTEI-GDLSKLQVLDLSSNHIVGEIPVQL-GKLFSLTKLILNSNQLSGGIPLE 534
+N ++P I +L L+ L ++ N + +P+ + +L +L +L L+ NQL P
Sbjct: 70 DNKLQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRV 128
Query: 535 LGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVEKLIHLSELDL 594
SLT+L Y+ L N+L+S +PK + +KL L EL L
Sbjct: 129 FDSLTKLTYLSLGYNELQS-LPKGV-----------------------FDKLTSLKELRL 164
Query: 595 SYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
N L + L+ L L +N L F+ + L + + N
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 2/176 (1%)
Query: 375 ELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGK 434
+LDL +N+LS + LT+L L+ + +N + L +LE + N L
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 435 VYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGD-LSKL 493
F NL L +N + + KL + N + S+P + D L+ L
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSL 159
Query: 494 QVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSAN 549
+ L L +N + KL L L L++NQL SL +L+ + L N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 103 FSSFPHLVRLNLSFNIVFGTIPPQV-GNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLY 161
F +L L L N ++PP+V +L++L YL LG N+L + L L+ L
Sbjct: 105 FDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163
Query: 162 FDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNN 213
NQL +L + L L +N L + +L L L N
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 1/185 (0%)
Query: 102 AFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSN-QLTGVIPQEIGHLNQLRSL 160
+F S +L L L N + G L+ L+ LDL N QL V P L L +L
Sbjct: 50 SFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTL 109
Query: 161 YFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIP 220
+ D L P L + L L NNL + +L NL + +L+ N +
Sbjct: 110 HLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPE 169
Query: 221 LVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQL 280
L SL L L +N ++ + P + +L L LYL++N+LS V+ L+SL L
Sbjct: 170 HAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYL 229
Query: 281 DLSEN 285
L++N
Sbjct: 230 RLNDN 234
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 86/201 (42%), Gaps = 1/201 (0%)
Query: 134 QYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHN-NLH 192
Q + L N+++ V L L+ N L G L L+ +L L N L
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 193 GPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSN 252
P + L +L +L+ L + P + L +L L L N L L + +L N
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 253 LGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLS 312
L L+L+ N + L SL +L L +N ++ P + +L L + LF+N+LS
Sbjct: 154 LTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Query: 313 GFIPPILGNLKSLSALGLHIN 333
+L L+SL L L+ N
Sbjct: 214 MLPAEVLVPLRSLQYLRLNDN 234
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 106/271 (39%), Gaps = 32/271 (11%)
Query: 234 LSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSEN-QLSGSIP 292
L N++S + S + NL IL+L+SN+L+G + L L QLDLS+N QL P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 293 LSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXXXXXX 352
+ L L + L L P + L +L L L N L + +
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTF--------- 148
Query: 353 XXXXXXXXXFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIP 412
++G L +F L NR+ H+ L L + + +NH P
Sbjct: 149 ------------RDLGNLTHLF---LHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHP 193
Query: 413 KSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFN--WRNFPKLC 470
+ R+L L + NNLS E +L +L + N + + W K
Sbjct: 194 HAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQK-- 251
Query: 471 TFNASMNNIYGSIPTEIG--DLSKLQVLDLS 499
F S + + ++P + DL +L DL
Sbjct: 252 -FRGSSSEVPCNLPQRLAGRDLKRLAASDLE 281
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 60/166 (36%), Gaps = 25/166 (15%)
Query: 482 SIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTEL 541
++PT I S Q + L N I +LT L L+SN L+G LT L
Sbjct: 24 AVPTGIPASS--QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLL 81
Query: 542 QYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVEKLIHLSELDLSYNFLDE 601
+ +DLS N Q P L HL L L L E
Sbjct: 82 EQLDLSDNA-----------------------QLRVVDPTTFRGLGHLHTLHLDRCGLQE 118
Query: 602 EMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL 647
P + +L+ L L NNL F + NL+H+ + N +
Sbjct: 119 LGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 87/207 (42%), Gaps = 10/207 (4%)
Query: 137 DLGSNQLTGVIPQ-EIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPI 195
+L +T + Q E+ ++Q+ + D+ + G I L + LAL N LH
Sbjct: 25 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVRYLALGGNKLHDI- 78
Query: 196 PPSLGNLSNLANFYLNNNSLFDSIP-LVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLG 254
+L L+NL L N L S+P V L +L L L +NQL L L+NL
Sbjct: 79 -SALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 255 ILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGF 314
L L N L V L +L +LDLS NQL L+ L + L+ N L
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 315 IPPILGNLKSLSALGLHINQLNGVIPA 341
+ L SL + LH N + P
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCPG 223
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 30/137 (21%)
Query: 535 LGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVEKLIHLSELDL 594
L LT L Y+ L+ N+L+S +P + +KL +L EL L
Sbjct: 81 LKELTNLTYLILTGNQLQS-LPNGV-----------------------FDKLTNLKELVL 116
Query: 595 SYNFLDEEMPFQICN-MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ----G 649
N L + +P + + + +L LNL HN L F+ + NL+ +D+SYN+LQ G
Sbjct: 117 VENQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
Query: 650 PIPNSTVFKDAHVEGNK 666
T KD + N+
Sbjct: 176 VFDKLTQLKDLRLYQNQ 192
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 26/157 (16%)
Query: 485 TEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYI 544
+ + +L+ L L L+ N + KL +L +L+L NQL LT L Y+
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 545 DLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVEKLIHLSELDLSYNFLDEEMP 604
+L+ N+L+S +PK + +KL +L+ELDLSYN L + +P
Sbjct: 139 NLAHNQLQS-LPKGV-----------------------FDKLTNLTELDLSYNQL-QSLP 173
Query: 605 FQICN-MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHI 640
+ + + L+ L L N L F+ + +L +I
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 2/142 (1%)
Query: 130 LSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEI-GQLNLINELALCH 188
L+ L YL L NQL + L L+ L NQL S+P + +L + L L H
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAH 142
Query: 189 NNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLG 248
N L L+NL L+ N L V L L L L +NQL +
Sbjct: 143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD 202
Query: 249 NLSNLGILYLYSNSLSGHIPSV 270
L++L ++L+ N P +
Sbjct: 203 RLTSLQYIWLHDNPWDCTCPGI 224
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 70/187 (37%), Gaps = 34/187 (18%)
Query: 367 IGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVN--ICENHFFGPIPKSL-RNLTSLER 423
I YL ++ L L N+L H IS L EL + I + +P + LT+L+
Sbjct: 59 IQYLPNVRYLALGGNKL-----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113
Query: 424 VRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSI 483
+ +N L F NLT+L+ + N S+
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-------------------------SL 148
Query: 484 PTEIGD-LSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQ 542
P + D L+ L LDLS N + KL L L L NQL LT LQ
Sbjct: 149 PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208
Query: 543 YIDLSAN 549
YI L N
Sbjct: 209 YIWLHDN 215
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 10/132 (7%)
Query: 127 VGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELAL 186
+ L ++ LDL S Q+T V P + L+ L+ LY D+NQ+ +I P G NL L++
Sbjct: 109 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISPLAGLTNL-QYLSI 164
Query: 187 CHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFS 246
+N ++ P L NLS L ++N + D P L +L +L + L NQ+S + P
Sbjct: 165 GNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP-- 218
Query: 247 LGNLSNLGILYL 258
L NLSNL I+ L
Sbjct: 219 LANLSNLFIVTL 230
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 8/115 (6%)
Query: 226 LKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSEN 285
L +L L+L NQ++ L P L NL+ + L L N L S I L+S+ LDL+
Sbjct: 68 LNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 123
Query: 286 QLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIP 340
Q++ PL+ LS+L V+ L N ++ P L L +L L + NQ+N + P
Sbjct: 124 QITDVTPLA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP 174
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 123 IPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLIN 182
I P G L+ LQYL +G+NQ+ + P + +L++L +L D N++ I P NLI
Sbjct: 150 ISPLAG-LTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKIS-DISPLASLPNLI- 204
Query: 183 ELALCHNNLHGPIPPSLGNLSNL 205
E+ L N + P L NLSNL
Sbjct: 205 EVHLKDNQISDVSP--LANLSNL 225
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 80/187 (42%), Gaps = 9/187 (4%)
Query: 145 GVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSN 204
V E+ ++Q+ + D+ + G I L + LAL N LH +L L+N
Sbjct: 34 AVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVRYLALGGNKLHDI--SALKELTN 86
Query: 205 LANFYLNNNSLFDSIP-LVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSL 263
L L N L S+P V L +L L L +NQL L L+NL LYLY N L
Sbjct: 87 LTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQL 145
Query: 264 SGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLK 323
V L +L +LDL NQL L+ L +SL N L + L
Sbjct: 146 QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLT 205
Query: 324 SLSALGL 330
SL+ + L
Sbjct: 206 SLTHIWL 212
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 80/200 (40%), Gaps = 11/200 (5%)
Query: 83 RVISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQ 142
I NL + + + +S ++ N V G + L ++YL LG N+
Sbjct: 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVRYLALGGNK 74
Query: 143 LTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEI-GQLNLINELALCHNNLHGPIPPSLGN 201
L + + L L L NQL S+P + +L + EL L N L
Sbjct: 75 LHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131
Query: 202 LSNLANFYLNNNSLFDSIPL-VLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYS 260
L+NL YL +N L S+P V L +L+ LDL NQL L L+ L L L
Sbjct: 132 LTNLTYLYLYHNQL-QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND 190
Query: 261 NSLSGHIPSVIGNLKSLLQL 280
N L V L SL +
Sbjct: 191 NQLKSVPDGVFDRLTSLTHI 210
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Query: 130 LSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEI-GQLNLINELALCH 188
L+ L YL L NQL + L L+ L NQL S+P + +L + L L H
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYH 142
Query: 189 NNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPL-VLGNLKSLSTLDLSKNQLSGLIPFSL 247
N L L+NL L+NN L S+P V L L L L+ NQL +
Sbjct: 143 NQLQSLPKGVFDKLTNLTRLDLDNNQL-QSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVF 201
Query: 248 GNLSNLGILYLYSN 261
L++L ++L +N
Sbjct: 202 DRLTSLTHIWLLNN 215
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 511 LGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXXXX 570
L +L +LT LIL NQL LT L+ + L N+L+S +P +
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLY 139
Query: 571 XXXQFSQKIPIEV-EKLIHLSELDLSYNFLDEEMPFQICN-MKSLEKLNLCHNNLSGFIP 628
Q +P V +KL +L+ LDL N L + +P + + + L++L+L N L
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQL-QSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 629 RCFEGMHNLSHI 640
F+ + +L+HI
Sbjct: 199 GVFDRLTSLTHI 210
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 26/115 (22%)
Query: 535 LGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVEKLIHLSELDL 594
L LT L Y+ L+ N+L+S +P + +KL +L EL L
Sbjct: 81 LKELTNLTYLILTGNQLQS-LPNGV-----------------------FDKLTNLKELVL 116
Query: 595 SYNFLDEEMPFQICN-MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
N L + +P + + + +L L L HN L F+ + NL+ +D+ N+LQ
Sbjct: 117 VENQL-QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ 170
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 1/208 (0%)
Query: 127 VGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELAL 186
VG + Q + L N+++ V L L+ N L L L+ +L L
Sbjct: 27 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 86
Query: 187 CHN-NLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPF 245
N L P + L L +L+ L + P + L +L L L N L L
Sbjct: 87 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 146
Query: 246 SLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMS 305
+ +L NL L+L+ N +S L SL +L L +N+++ P + +L L +
Sbjct: 147 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 206
Query: 306 LFSNSLSGFIPPILGNLKSLSALGLHIN 333
LF+N+LS L L++L L L+ N
Sbjct: 207 LFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 82/198 (41%), Gaps = 3/198 (1%)
Query: 234 LSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSEN-QLSGSIP 292
L N++S + S NL IL+L+SN L+ + L L QLDLS+N QL P
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 293 LSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXXXXXX 352
+ L L + L L P + L +L L L N L +P
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTH 156
Query: 353 XXXXXXXXXFVPEE-IGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPI 411
VPE L S+ L L NR++ PH+ +L L+ + + N+
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 412 PKSLRNLTSLERVRFNQN 429
++L L +L+ +R N N
Sbjct: 217 TEALAPLRALQYLRLNDN 234
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 1/138 (0%)
Query: 202 LSNLANFYLNNNSLFDSI-PLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYS 260
L+ L L++N+ S+ P L L TL L + L L P L+ L LYL
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 261 NSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILG 320
N+L +L +L L L N++S + L SL + L N ++ P
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 197
Query: 321 NLKSLSALGLHINQLNGV 338
+L L L L N L+ +
Sbjct: 198 DLGRLMTLYLFANNLSAL 215
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 3/144 (2%)
Query: 517 LTKLILNSNQLSGGIPLELGSLTELQYIDLSAN-KLRSWIPKSIAXXXXXXXXXXXXXQF 575
LT L L+SN L+ L L+ +DLS N +LRS P +
Sbjct: 57 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 116
Query: 576 SQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMH 635
+ P L L L L N L ++ +L L L N +S R F G+H
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 176
Query: 636 NLSHIDISYNELQGPIPNSTVFKD 659
+L + + N + P++ F+D
Sbjct: 177 SLDRLLLHQNRVAHVHPHA--FRD 198
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 52/144 (36%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Query: 168 HGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPL-VLGNL 226
H S+P I I L L N + P +L NL YL +N L ++P+ V +L
Sbjct: 31 HASVPAGIPTNAQI--LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSL 87
Query: 227 KSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQ 286
L+ LDL NQL+ L L +L L++ N L+ +P I L L L L +NQ
Sbjct: 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146
Query: 287 LSGSIPL-SLGNLSSLTVMSLFSN 309
L SIP + LSSLT LF N
Sbjct: 147 LK-SIPHGAFDRLSSLTHAYLFGN 169
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 29/161 (18%)
Query: 480 YGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLEL-GSL 538
+ S+P I + Q+L L N I P L +L +L L SNQL G +P+ + SL
Sbjct: 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSL 87
Query: 539 TELQYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVEKLIHLSELDLSYNF 598
T+L +DL N+L + +P ++ ++L+HL EL + N
Sbjct: 88 TQLTVLDLGTNQL-TVLPSAV-----------------------FDRLVHLKELFMCCNK 123
Query: 599 LDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSH 639
L E+P I + L L L N L F+ + +L+H
Sbjct: 124 L-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Query: 187 CHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFS 246
C + H +P G +N YL++N + P V +L +L L L NQL L
Sbjct: 26 CRSKRHASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV 83
Query: 247 LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSL 306
+L+ L +L L +N L+ +V L L +L + N+L+ +P + L+ LT ++L
Sbjct: 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142
Query: 307 FSNSLSGFIPPILGNLKSLS 326
N L L SL+
Sbjct: 143 DQNQLKSIPHGAFDRLSSLT 162
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 98 LQEFAFSSFPHLVRLNLSFNIVFGTIPPQV-GNLSELQYLDLGSNQLTGVIPQEI-GHLN 155
L+ F S +L L L N G +P V +L++L LDLG+NQLT V+P + L
Sbjct: 55 LEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLV 112
Query: 156 QLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNN 213
L+ L+ N+L +P I +L + LAL N L + LS+L + YL N
Sbjct: 113 HLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 251 SNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSL-GNLSSLTVMSLFSN 309
+N ILYL+ N ++ P V +L +L +L L NQL G++P+ + +L+ LTV+ L +N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 310 SLSGFIPPILGNLKSLSALGLHINQL 335
L+ + L L L + N+L
Sbjct: 99 QLTVLPSAVFDRLVHLKELFMCCNKL 124
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 232 LDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSI 291
L L NQ++ L P +L NL LYL SN L V +L L LDL NQL+
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 292 PLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGV 338
L L + + N L+ +P + L L+ L L NQL +
Sbjct: 105 SAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSI 150
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 1/208 (0%)
Query: 127 VGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELAL 186
VG + Q + L N+++ V L L+ N L L L+ +L L
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 187 CHN-NLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPF 245
N L P + L L +L+ L + P + L +L L L N L L
Sbjct: 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 246 SLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMS 305
+ +L NL L+L+ N +S L SL +L L +N+++ P + +L L +
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 306 LFSNSLSGFIPPILGNLKSLSALGLHIN 333
LF+N+LS L L++L L L+ N
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 82/198 (41%), Gaps = 3/198 (1%)
Query: 234 LSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSEN-QLSGSIP 292
L N++S + S NL IL+L+SN L+ + L L QLDLS+N QL P
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 293 LSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXXXXXX 352
+ L L + L L P + L +L L L N L +P
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTH 157
Query: 353 XXXXXXXXXFVPEE-IGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPI 411
VPE L S+ L L NR++ PH+ +L L+ + + N+
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 412 PKSLRNLTSLERVRFNQN 429
++L L +L+ +R N N
Sbjct: 218 TEALAPLRALQYLRLNDN 235
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 1/138 (0%)
Query: 202 LSNLANFYLNNNSLFDSI-PLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYS 260
L+ L L++N+ S+ P L L TL L + L L P L+ L LYL
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 261 NSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILG 320
N+L +L +L L L N++S + L SL + L N ++ P
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 321 NLKSLSALGLHINQLNGV 338
+L L L L N L+ +
Sbjct: 199 DLGRLMTLYLFANNLSAL 216
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 66/174 (37%), Gaps = 3/174 (1%)
Query: 487 IGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDL 546
+G + Q + L N I +LT L L+SN L+ L L+ +DL
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 547 SAN-KLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPF 605
S N +LRS P + + P L L L L N L
Sbjct: 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 606 QICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTVFKD 659
++ +L L L N +S R F G+H+L + + N + P++ F+D
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA--FRD 199
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 86/213 (40%), Gaps = 34/213 (15%)
Query: 68 LSPCAWV-GISCNQAERVIS-------------------INLSSMGLNGTLQEFAFSSFP 107
+ C V G +CN+ ++ + ++L S GL TL + F
Sbjct: 1 MKTCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGL-ATLSDATFRGLT 59
Query: 108 HLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQL 167
L LNL +N + +L+EL L L +NQL + HL QL LY NQL
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119
Query: 168 HGSIPPEI-GQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPL-VLGN 225
S+P + +L + EL L N L + L+NL L+ N L S+P
Sbjct: 120 K-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDR 177
Query: 226 LKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYL 258
L L T+ L NQ + S ILYL
Sbjct: 178 LGKLQTITLFGNQF---------DCSRCEILYL 201
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Query: 202 LSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSN 261
L+ L L+ N L V +L L TL L+ NQL+ L +L+ L LYL N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 262 SLSGHIPSVIGNLKSLLQLDLSENQLSGSIPL-SLGNLSSLTVMSLFSNSLSGFIPPILG 320
L V L L +L L+ NQL SIP + L++L +SL +N L
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 321 NLKSLSALGLHINQLN 336
L L + L NQ +
Sbjct: 177 RLGKLQTITLFGNQFD 192
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 59/160 (36%)
Query: 131 SELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNN 190
++ + LDL S L + L +L L D NQL L + L L +N
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 191 LHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNL 250
L +L+ L YL N L V L L L L+ NQL + + L
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 251 SNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGS 290
+NL L L +N L L L + L NQ S
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 52/127 (40%), Gaps = 2/127 (1%)
Query: 184 LALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPL-VLGNLKSLSTLDLSKNQLSGL 242
L L +N L +L+ L L NN L S+PL V +L L L L NQL L
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSL 122
Query: 243 IPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLT 302
L+ L L L +N L L +L L LS NQL + L L
Sbjct: 123 PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182
Query: 303 VMSLFSN 309
++LF N
Sbjct: 183 TITLFGN 189
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Query: 403 CENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFN 462
C+ +P + T E++ L+ F LT+L+ N +
Sbjct: 21 CQGKSLDSVPSGIPADT--EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 463 WRNFPKLCTFNASMNNIYGSIPTEIGD-LSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLI 521
+ + +L T + NN S+P + D L++L L L N + +L L +L
Sbjct: 79 FDDLTELGTLGLA-NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 522 LNSNQLSGGIPLELGSLTELQYIDLSANKLRS 553
LN+NQL LT LQ + LS N+L+S
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 614 EKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTVFKDAHVEGNKGLCGN 671
EKL+L L+ F G+ L+ +++ YN+LQ ++ VF D G GL N
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ--TLSAGVFDDLTELGTLGLANN 93
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 80/195 (41%), Gaps = 25/195 (12%)
Query: 68 LSPCAWV-GISCNQAERVIS-------------------INLSSMGLNGTLQEFAFSSFP 107
+ C V G +CN+ ++ + ++L S GL TL + F
Sbjct: 1 MKTCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGL-ATLSDATFRGLT 59
Query: 108 HLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQL 167
L LNL +N + +L+EL L L +NQL + HL QL LY NQL
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119
Query: 168 HGSIPPEI-GQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPL-VLGN 225
S+P + +L + EL L N L + L+NL L+ N L S+P
Sbjct: 120 K-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDR 177
Query: 226 LKSLSTLDLSKNQLS 240
L L T+ L NQ
Sbjct: 178 LGKLQTITLFGNQFD 192
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Query: 202 LSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSN 261
L+ L L+ N L V +L L TL L+ NQL+ L +L+ L LYL N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 262 SLSGHIPSVIGNLKSLLQLDLSENQLSGSIPL-SLGNLSSLTVMSLFSNSLSGFIPPILG 320
L V L L +L L+ NQL SIP + L++L +SL +N L
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 321 NLKSLSALGLHINQLN 336
L L + L NQ +
Sbjct: 177 RLGKLQTITLFGNQFD 192
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 59/160 (36%)
Query: 131 SELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNN 190
++ + LDL S L + L +L L D NQL L + L L +N
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 191 LHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNL 250
L +L+ L YL N L V L L L L+ NQL + + L
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 251 SNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGS 290
+NL L L +N L L L + L NQ S
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 52/127 (40%), Gaps = 2/127 (1%)
Query: 184 LALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPL-VLGNLKSLSTLDLSKNQLSGL 242
L L +N L +L+ L L NN L S+PL V +L L L L NQL L
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSL 122
Query: 243 IPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLT 302
L+ L L L +N L L +L L LS NQL + L L
Sbjct: 123 PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182
Query: 303 VMSLFSN 309
++LF N
Sbjct: 183 TITLFGN 189
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Query: 403 CENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFN 462
C+ +P + T E++ L+ F LT+L+ N +
Sbjct: 21 CQGKSLDSVPSGIPADT--EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 463 WRNFPKLCTFNASMNNIYGSIPTEIGD-LSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLI 521
+ + +L T + NN S+P + D L++L L L N + +L L +L
Sbjct: 79 FDDLTELGTLGLA-NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 522 LNSNQLSGGIPLELGSLTELQYIDLSANKLRS 553
LN+NQL LT LQ + LS N+L+S
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 614 EKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTVFKDAHVEGNKGLCGN 671
EKL+L L+ F G+ L+ +++ YN+LQ ++ VF D G GL N
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ--TLSAGVFDDLTELGTLGLANN 93
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 104/239 (43%), Gaps = 33/239 (13%)
Query: 74 VGISC-NQAERVI-----------SINLSSMGLN------GTLQEFAFSSFPHLVRLNLS 115
SC NQA RVI SI +++ LN ++ F HL L LS
Sbjct: 8 AACSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLS 67
Query: 116 FNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIP--- 172
N+V L L L+L N+LT V Q +L++LR L+ N + SIP
Sbjct: 68 KNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYA 126
Query: 173 ----PEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKS 228
P + +L+L EL L + L NL L +L D IP L L
Sbjct: 127 FNRVPSLRRLDL-GEL----KRLEYISEAAFEGLVNLRYLNLGMCNLKD-IP-NLTALVR 179
Query: 229 LSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQL 287
L L+LS N+L + P S L++L L+L ++ + +LKSL +L+LS N L
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 88/207 (42%), Gaps = 11/207 (5%)
Query: 134 QYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLN---LINELALCHNN 190
+YL+L N + + HL L L N + E+G N +N L L N
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKI---EVGAFNGLPSLNTLELFDNR 94
Query: 191 LHGPIPPSLGNLSNLANFYLNNNSLFDSIP-LVLGNLKSLSTLDLSK-NQLSGLIPFSLG 248
L + LS L +L NN + +SIP + SL LDL + +L + +
Sbjct: 95 LTTVPTQAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFE 153
Query: 249 NLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFS 308
L NL L L +L IP++ L L +L+LS N+L P S L+SL + L
Sbjct: 154 GLVNLRYLNLGMCNLKD-IPNLTA-LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 309 NSLSGFIPPILGNLKSLSALGLHINQL 335
++ +LKSL L L N L
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 107/272 (39%), Gaps = 35/272 (12%)
Query: 378 LCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYE 437
+CT R +P SI T + N+ EN + ++L LE ++ ++N +
Sbjct: 20 ICTRRELAEVPASIPVNTRYL--NLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVG 77
Query: 438 AFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPT----EIGDLSKL 493
AF P+L L+ N + + KL NN SIP+ + L +L
Sbjct: 78 AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLREL-WLRNNPIESIPSYAFNRVPSLRRL 136
Query: 494 QVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRS 553
+ +L + E + L +L L L L IP L +L L+ ++LS N+L
Sbjct: 137 DLGELKRLEYISEAAFE--GLVNLRYLNLGMCNLKD-IP-NLTALVRLEELELSGNRLDL 192
Query: 554 WIPKSIAXXXXXXXXXXXXXQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSL 613
P S F + L+H + N D+ +KSL
Sbjct: 193 IRPGS----------------FQGLTSLRKLWLMHAQVATIERNAFDD--------LKSL 228
Query: 614 EKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
E+LNL HNNL F +H L + +++N
Sbjct: 229 EELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 114/280 (40%), Gaps = 13/280 (4%)
Query: 229 LSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLS 288
++ L+L+ NQL L P + S L IL NS+S P + L L L+L N+LS
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 289 GSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXX 348
+ ++LT + L SNS+ N K+L L L N L+ +
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLEN 146
Query: 349 XXXXXXXXXXXXXFVPEEIGYL--KSIFELDLCTNRLSGAIP---HSISNLTELVLVNIC 403
EE+ +L S+ +LDL +N L P +I L L+L N
Sbjct: 147 LQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQ 206
Query: 404 EN-HFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFG--YHPNLTFLDFSQNNFY--GE 458
N H + L N TS++ + N L F NLT LD S NN + G
Sbjct: 207 LNPHLTEKLCWELSN-TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGN 265
Query: 459 ISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDL 498
SF++ P L + NNI P LS L+ L L
Sbjct: 266 GSFSY--LPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 123/511 (24%), Positives = 186/511 (36%), Gaps = 65/511 (12%)
Query: 181 INELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLS 240
I L L HN L P + S LA NS+ P + L L L+L N+LS
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 241 GLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGS---------- 290
+ + +NL L L SNS+ + N K+L++LDLS N LS +
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLEN 146
Query: 291 -----------IPLS------LGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHIN 333
+ L LGN SSL + L SN L F P + L AL L+
Sbjct: 147 LQELLLAKNKILALRSEELEFLGN-SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNA 205
Query: 334 QLNGVIPASIXXXXXXXXXXXXXXXXXXFVPEEIGYLK-----SIFELDLCTNRLSGAIP 388
QLN + + + ++ +LDL N L
Sbjct: 206 QLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGN 265
Query: 389 HSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFL 448
S S L L +++ N+ P+S L++L + + V + HPN+
Sbjct: 266 GSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSV--SLASHPNI--- 320
Query: 449 DFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNH-----I 503
+ SF W + L N NNI + L L+ L LS +
Sbjct: 321 --------DDFSFQWLKY--LEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTL 370
Query: 504 VGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKL------RSWIPK 557
E V L LT L L N +S L +L+ +DL N++ + W +
Sbjct: 371 TNETFVSLAHSPLLT-LNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEW--R 427
Query: 558 SIAXXXXXXXXXXXXXQFSQKIPIEVEKLIHLSELDLSYNFLD-EEMPFQICNMKSLEKL 616
+ Q S V L L ++ +D PF+ +++L L
Sbjct: 428 GLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRP--LRNLTIL 485
Query: 617 NLCHNNLSGFIPRCFEGMHNLSHIDISYNEL 647
+L +NN++ EG+ NL +D +N L
Sbjct: 486 DLSNNNIANINEDLLEGLENLEILDFQHNNL 516
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 222 VLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGH-IPSVIGNLKSLLQL 280
V +L++L LD+S LS+L +L + NS + +P + L++L L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 281 DLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIP 340
DLS+ QL P + +LSSL V+++ SN L I L SL + LH N + P
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 605 FQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQ 648
F I ++K+L++LN+ HN + F +P F + NL H+D+S N++Q
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 452 QNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQL 511
Q NF +I RN L + S + PT LS LQVL+++SN +
Sbjct: 458 QENFLPDIFTELRN---LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514
Query: 512 GKLFSLTKLILNSNQLSGGIP 532
+L SL K+ L++N P
Sbjct: 515 DRLTSLQKIWLHTNPWDCSCP 535
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 106/239 (44%), Gaps = 33/239 (13%)
Query: 74 VGISC-NQAERVI-----------SINLSSMGLN---GTLQEFAFSSFPHLVRL---NLS 115
SC NQA RVI SI +++ LN ++Q +F HL L LS
Sbjct: 8 AACSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLS 67
Query: 116 FNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIP--- 172
N+V L L L+L N+LT V Q +L++LR L+ N + SIP
Sbjct: 68 KNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYA 126
Query: 173 ----PEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKS 228
P + +L+L EL L + L NL L +L D IP L L
Sbjct: 127 FNRVPSLRRLDL-GEL----KRLEYISEAAFEGLVNLRYLNLGMCNLKD-IP-NLTALVR 179
Query: 229 LSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQL 287
L L+LS N+L + P S L++L L+L ++ + +LKSL +L+LS N L
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 88/207 (42%), Gaps = 11/207 (5%)
Query: 134 QYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLN---LINELALCHNN 190
+YL+L N + + HL L L N + E+G N +N L L N
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKI---EVGAFNGLPSLNTLELFDNR 94
Query: 191 LHGPIPPSLGNLSNLANFYLNNNSLFDSIP-LVLGNLKSLSTLDLSK-NQLSGLIPFSLG 248
L + LS L +L NN + +SIP + SL LDL + +L + +
Sbjct: 95 LTTVPTQAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFE 153
Query: 249 NLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFS 308
L NL L L +L IP++ L L +L+LS N+L P S L+SL + L
Sbjct: 154 GLVNLRYLNLGMCNLKD-IPNLTA-LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 309 NSLSGFIPPILGNLKSLSALGLHINQL 335
++ +LKSL L L N L
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 107/272 (39%), Gaps = 35/272 (12%)
Query: 378 LCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYE 437
+CT R +P SI T + N+ EN + ++L LE ++ ++N +
Sbjct: 20 ICTRRELAEVPASIPVNTRYL--NLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVG 77
Query: 438 AFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPT----EIGDLSKL 493
AF P+L L+ N + + KL NN SIP+ + L +L
Sbjct: 78 AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLREL-WLRNNPIESIPSYAFNRVPSLRRL 136
Query: 494 QVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRS 553
+ +L + E + L +L L L L IP L +L L+ ++LS N+L
Sbjct: 137 DLGELKRLEYISEAAFE--GLVNLRYLNLGMCNLKD-IP-NLTALVRLEELELSGNRLDL 192
Query: 554 WIPKSIAXXXXXXXXXXXXXQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSL 613
P S F + L+H + N D+ +KSL
Sbjct: 193 IRPGS----------------FQGLTSLRKLWLMHAQVATIERNAFDD--------LKSL 228
Query: 614 EKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
E+LNL HNNL F +H L + +++N
Sbjct: 229 EELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 97/248 (39%), Gaps = 31/248 (12%)
Query: 402 ICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISF 461
IC +P S+ + + +N++ + F + +L L S+N
Sbjct: 20 ICTRRELAEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVG 77
Query: 462 NWRNFPKLCTFNASMNNIYGSIPTEIGD-LSKLQVLDLSSNHIVGEIPVQLGKLFSLTKL 520
+ P L T +N ++PT+ + LSKL+ L L +N I ++ SL +L
Sbjct: 78 AFNGLPSLNTLEL-FDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRL 136
Query: 521 ILNS-NQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKI 579
L +L L L+Y++L L+ IP A
Sbjct: 137 DLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD-IPNLTA------------------- 176
Query: 580 PIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSH 639
L+ L EL+LS N LD P + SL KL L H ++ F+ + +L
Sbjct: 177 ------LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEE 230
Query: 640 IDISYNEL 647
+++S+N L
Sbjct: 231 LNLSHNNL 238
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 234 LSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPL 293
L+ NQ++ L P +L NL LY SN L+ V L L QLDL++N L SIP
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPR 98
Query: 294 -SLGNLSSLTVMSLFSN 309
+ NL SLT + L++N
Sbjct: 99 GAFDNLKSLTHIYLYNN 115
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 117 NIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIG 176
NI ++P G ++ Q L L +NQ+T + P HL L+ LYF+ N+L
Sbjct: 21 NIRLASVP--AGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78
Query: 177 QLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNN 213
+L + +L L N+L + NL +L + YL NN
Sbjct: 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 184 LALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPL-VLGNLKSLSTLDLSKNQLSGL 242
L L +N + P +L NL Y N+N L +IP V L L+ LDL+ N L +
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 243 IPFSLGNLSNLGILYLYSN 261
+ NL +L +YLY+N
Sbjct: 97 PRGAFDNLKSLTHIYLYNN 115
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 473 NASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIP 532
N + ++ IPT+ Q L L++N I P L +L +L NSN+L+
Sbjct: 21 NIRLASVPAGIPTD------KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT 74
Query: 533 LELGSLTELQYIDLSANKLRSWIPK 557
LT+L +DL+ N L+S IP+
Sbjct: 75 GVFDKLTQLTQLDLNDNHLKS-IPR 98
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Query: 184 LALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLI 243
L C N +P G ++ +LNNN + P V +L +L L + N+L+ +
Sbjct: 16 LVNCQNIRLASVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP 73
Query: 244 PFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSEN 285
L+ L L L N L NLKSL + L N
Sbjct: 74 TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 482 SIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTEL 541
+P EI +LS L+VLDLS N + +P +LG F L N ++ +P E G+L L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL 318
Query: 542 QYIDLSANKLR 552
Q++ + N L
Sbjct: 319 QFLGVEGNPLE 329
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 253 LGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLS 312
L LYL NSL+ +P+ I NL +L LDLS N+L+ S+P LG+ L F N ++
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
Query: 313 GFIPPILGNLKSLSALGLHINQL 335
+P GNL +L LG+ N L
Sbjct: 307 T-LPWEFGNLCNLQFLGVEGNPL 328
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 205 LANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLS 264
L YLN NSL + +P + NL +L LDLS N+L+ L P LG+ L Y + N ++
Sbjct: 249 LTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVT 306
Query: 265 GHIPSVIGNLKSLLQLDLSENQLS 288
+P GNL +L L + N L
Sbjct: 307 T-LPWEFGNLCNLQFLGVEGNPLE 329
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 106 FPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVN 165
+ L RL L+ N + +P ++ NLS L+ LDL N+LT +P E+G QL+ YF +
Sbjct: 246 YDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF-FD 302
Query: 166 QLHGSIPPEIGQL 178
+ ++P E G L
Sbjct: 303 NMVTTLPWEFGNL 315
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 10/65 (15%)
Query: 489 DLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSA 548
DLS LQ+ ++S+N + K LT+L LN N L+ +P E+ +L+ L+ +DLS
Sbjct: 230 DLSNLQIFNISAN---------IFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSH 279
Query: 549 NKLRS 553
N+L S
Sbjct: 280 NRLTS 284
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 23/200 (11%)
Query: 119 VFGTIPPQVGNLSELQYL------DLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIP 172
FGT V + +QYL +L NQ+T + P + +L ++ L N L
Sbjct: 48 AFGT---GVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-- 100
Query: 173 PEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTL 232
I L I L L + P L LSNL YL+ N + + PL L +L L
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPL--AGLTNLQYL 156
Query: 233 DLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIP 292
+ Q+S L P L NLS L L N +S P + +L +L+++ L NQ+S P
Sbjct: 157 SIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
Query: 293 LSLGNLSSLTVMSLFSNSLS 312
L+ N S+L +++L + +++
Sbjct: 213 LA--NTSNLFIVTLTNQTIT 230
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 226 LKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSEN 285
L +L L+L NQ++ L P L NL+ + L L N L S I L+S+ LDL+
Sbjct: 62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 117
Query: 286 QLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIP 340
Q++ PL+ LS+L V+ L N ++ P L L +L L + Q++ + P
Sbjct: 118 QITDVTPLA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP 168
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 210 LNNNSLFD-SIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIP 268
LN+N L S + G L L L+L +NQL+G+ P + S++ L L N +
Sbjct: 36 LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 269 SVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSN 309
+ L L L+L +NQ+S +P S +L+SLT ++L SN
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%)
Query: 103 FSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYF 162
F PHLV+L L N + G P S +Q L LG N++ + + L+QL++L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 163 DVNQLHGSIPPEIGQLNLINELALCHN 189
NQ+ +P LN + L L N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 256 LYLYSNSLSGHIPS--VIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSG 313
L L N L G I S + G L L++L+L NQL+G P + S + + L N +
Sbjct: 34 LLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 314 FIPPILGNLKSLSALGLHINQLNGVIPAS 342
+ L L L L+ NQ++ V+P S
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGS 121
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 247 LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSG-SIPLSLGNLSSLTVMS 305
G L +L L L N L+G P+ + +L L EN++ S + LG L L ++
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLG-LHQLKTLN 108
Query: 306 LFSNSLSGFIPPILGNLKSLSALGLHINQLN 336
L+ N +S +P +L SL++L L N N
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 36/87 (41%)
Query: 511 LGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXXXX 570
G+L L KL L NQL+G P + +Q + L NK++ K
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 571 XXXQFSQKIPIEVEKLIHLSELDLSYN 597
Q S +P E L L+ L+L+ N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 29/139 (20%)
Query: 418 LTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMN 477
LT+L + + N+L+ EAF PNL +LD S N+ + F
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF---------------- 106
Query: 478 NIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLEL-- 535
DL L+VL L +NHIV + L KL L+ NQ+S P+EL
Sbjct: 107 --------LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIK 157
Query: 536 --GSLTELQYIDLSANKLR 552
L +L +DLS+NKL+
Sbjct: 158 DGNKLPKLMLLDLSSNKLK 176
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 10/157 (6%)
Query: 184 LALCHNNL---HGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLS 240
L L HNNL P+ L+NL + L++N L + +L LDLS N L
Sbjct: 44 LDLSHNNLSRLRAEWTPT--RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101
Query: 241 GLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSL---GN 297
L F +L L +L LY+N + + ++ L +L LS+NQ+S P+ L GN
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGN 160
Query: 298 -LSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHIN 333
L L ++ L SN L L L + GL+++
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 106 FPHLVRLNLSFNIVFGTIPPQVGNLSELQYLD------LGSNQLTGVIPQEIGHLNQLRS 159
P+L LNLS N Q+ ++S +QYL L N+LT + P + +L L
Sbjct: 65 LPNLTSLNLSNN--------QITDISPIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGW 114
Query: 160 LYFDVNQLHGSIPPEIGQLNLINELALCHN---NLHGPIPPSLGNLSNLANFYLNNNSLF 216
L+ D N++ + L + L+L HN +++G L +L L + YL NN +
Sbjct: 115 LFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDING-----LVHLPQLESLYLGNNKIT 167
Query: 217 DSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSG 265
D VL L L TL L NQ+S ++P L L+ L LYL N +S
Sbjct: 168 DIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 212
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 26/135 (19%)
Query: 226 LKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSEN 285
L +L++L+LS NQ++ + P L N+ L+L N L+ P + NLK+L L L EN
Sbjct: 65 LPNLTSLNLSNNQITDISPIQY--LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 120
Query: 286 QLSGSIPL--------------------SLGNLSSLTVMSLFSNSLSGFIPPILGNLKSL 325
++ L L +L L + L +N ++ +L L L
Sbjct: 121 KVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKL 178
Query: 326 SALGLHINQLNGVIP 340
L L NQ++ ++P
Sbjct: 179 DTLSLEDNQISDIVP 193
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 200 GNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLY 259
G L L L++N L S+PL+ L +L+ LD+S N+L+ L +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 260 SNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGN-LSSLTVMSLFSNSL 311
N L P ++ L +L L+ NQL+ +P L N L +L + L NSL
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 63/152 (41%), Gaps = 9/152 (5%)
Query: 113 NLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIP 172
NL + T+ P + L L+L +LT + Q G L L +L NQL
Sbjct: 41 NLLYTFSLATLMPY----TRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL-- 92
Query: 173 PEIGQ-LNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLST 231
P +GQ L + L + N L +L L L YL N L P +L L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 232 LDLSKNQLSGLIPFSLGNLSNLGILYLYSNSL 263
L L+ NQL+ L L L NL L L NSL
Sbjct: 153 LSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 187 CHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFS 246
C +PP L + + +L+ N L+ L L+ L+L + +L+ L
Sbjct: 17 CDKRQLTALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQ--V 72
Query: 247 LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPL-SLGNLSSLTVMS 305
G L LG L L N L +P + L +L LD+S N+L+ S+PL +L L L +
Sbjct: 73 DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELY 130
Query: 306 LFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASI 343
L N L P +L L L L NQL +PA +
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGL 167
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Query: 89 LSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIP 148
L+ + ++GTL P L L+LS N ++P L L LD+ N+LT +
Sbjct: 67 LTKLQVDGTL--------PVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 149 QEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANF 208
+ L +L+ LY N+L P + + +L+L +N L L L NL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
Query: 209 YLNNNSLFDSIP 220
L NSL+ +IP
Sbjct: 178 LLQENSLY-TIP 188
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 200 GNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLY 259
G L L L++N L S+PL+ L +L+ LD+S N+L+ L +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 260 SNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGN-LSSLTVMSLFSNSL 311
N L P ++ L +L L+ NQL+ +P L N L +L + L NSL
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 63/152 (41%), Gaps = 9/152 (5%)
Query: 113 NLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIP 172
NL + T+ P + L L+L +LT + Q G L L +L NQL
Sbjct: 41 NLLYTFSLATLMP----YTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL-- 92
Query: 173 PEIGQ-LNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLST 231
P +GQ L + L + N L +L L L YL N L P +L L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 232 LDLSKNQLSGLIPFSLGNLSNLGILYLYSNSL 263
L L+ NQL+ L L L NL L L NSL
Sbjct: 153 LSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 187 CHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFS 246
C +PP L + + +L+ N L+ L L+ L+L + +L+ L
Sbjct: 17 CDKRQLTALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQ--V 72
Query: 247 LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPL-SLGNLSSLTVMS 305
G L LG L L N L +P + L +L LD+S N+L+ S+PL +L L L +
Sbjct: 73 DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELY 130
Query: 306 LFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASI 343
L N L P +L L L L NQL +PA +
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGL 167
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Query: 89 LSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIP 148
L+ + ++GTL P L L+LS N ++P L L LD+ N+LT +
Sbjct: 67 LTKLQVDGTL--------PVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 149 QEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANF 208
+ L +L+ LY N+L P + + +L+L +N L L L NL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
Query: 209 YLNNNSLFDSIP 220
L NSL+ +IP
Sbjct: 178 LLQENSLY-TIP 188
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 200 GNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLY 259
G L L L++N L S+PL+ L +L+ LD+S N+L+ L +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 260 SNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGN-LSSLTVMSLFSNSL 311
N L P ++ L +L L+ NQL+ +P L N L +L + L NSL
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 187 CHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFS 246
C +PP L + + +L+ N L+ L L+ L+L + +L+ L
Sbjct: 17 CDKRQLTALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQ--V 72
Query: 247 LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPL-SLGNLSSLTVMS 305
G L LG L L N L +P + L +L LD+S N+L+ S+PL +L L L +
Sbjct: 73 DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELY 130
Query: 306 LFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASI 343
L N L P +L L L L NQL +PA +
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGL 167
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 63/152 (41%), Gaps = 9/152 (5%)
Query: 113 NLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIP 172
NL + T+ P + L L+L +LT + Q G L L +L NQL
Sbjct: 41 NLLYTFSLATLMP----YTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL-- 92
Query: 173 PEIGQ-LNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLST 231
P +GQ L + L + N L +L L L YL N L P +L L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 232 LDLSKNQLSGLIPFSLGNLSNLGILYLYSNSL 263
L L+ NQL+ L L L NL L L NSL
Sbjct: 153 LSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Query: 89 LSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIP 148
L+ + ++GTL P L L+LS N ++P L L LD+ N+LT +
Sbjct: 67 LTKLQVDGTL--------PVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 149 QEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANF 208
+ L +L+ LY N+L P + + +L+L +N L L L NL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
Query: 209 YLNNNSLFDSIP 220
L NSL+ +IP
Sbjct: 178 LLQENSLY-TIP 188
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 200 GNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLY 259
G L L L++N L S+PL+ L +L+ LD+S N+L+ L +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 260 SNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGN-LSSLTVMSLFSNSL 311
N L P ++ L +L L+ NQL+ +P L N L +L + L NSL
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 187 CHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFS 246
C +PP L + + +L+ N L+ L L+ L+L + +L+ L
Sbjct: 17 CDKRQLTALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQ--V 72
Query: 247 LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPL-SLGNLSSLTVMS 305
G L LG L L N L +P + L +L LD+S N+L+ S+PL +L L L +
Sbjct: 73 DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELY 130
Query: 306 LFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASI 343
L N L P +L L L L NQL +PA +
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGL 167
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 63/152 (41%), Gaps = 9/152 (5%)
Query: 113 NLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIP 172
NL + T+ P + L L+L +LT + Q G L L +L NQL
Sbjct: 41 NLLYTFSLATLMP----YTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL-- 92
Query: 173 PEIGQ-LNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLST 231
P +GQ L + L + N L +L L L YL N L P +L L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 232 LDLSKNQLSGLIPFSLGNLSNLGILYLYSNSL 263
L L+ NQL+ L L L NL L L NSL
Sbjct: 153 LSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Query: 89 LSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIP 148
L+ + ++GTL P L L+LS N ++P L L LD+ N+LT +
Sbjct: 67 LTKLQVDGTL--------PVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 149 QEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANF 208
+ L +L+ LY N+L P + + +L+L +N L L L NL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
Query: 209 YLNNNSLFDSIP 220
L NSL+ +IP
Sbjct: 178 LLQENSLY-TIP 188
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 83/191 (43%), Gaps = 5/191 (2%)
Query: 126 QVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQ-LNLINEL 184
Q+ NL LQYL+L N+ G+ Q QL L LH P Q L+L+ L
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 185 ALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFD---SIPLVLGNLKSLSTLDLSKNQLSG 241
L H L L L +L + L NS D S +L + SL L LS L
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLS 489
Query: 242 LIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSL 301
+ + L N+ L L NSL+G + +LK L L+++ N + P L LS
Sbjct: 490 IDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLY-LNMASNNIRIIPPHLLPALSQQ 548
Query: 302 TVMSLFSNSLS 312
++++L N L
Sbjct: 549 SIINLSHNPLD 559
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 27/175 (15%)
Query: 490 LSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSAN 549
+++Q LDL++ H+ G +P + + SL KL+LN+N + S L+ + + N
Sbjct: 276 FTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGN 334
Query: 550 KLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVEKLIHLSELDLSYNFLDEE--MPFQI 607
+ + +EKL +L +LDLS++ ++ Q+
Sbjct: 335 MRKLDLGTRC-----------------------LEKLENLQKLDLSHSDIEASDCCNLQL 371
Query: 608 CNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTVFKDAHV 662
N++ L+ LNL +N G + F+ L +D+++ L P+S F++ H+
Sbjct: 372 KNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSP-FQNLHL 425
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 91/229 (39%), Gaps = 48/229 (20%)
Query: 454 NFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDL---SKLQVLDLSSNHIVGEIPVQ 510
N ++ N +F +LC NA+ S P+ + DL ++ LDL +
Sbjct: 300 NSLKKLVLNANSFDQLCQINAA------SFPS-LRDLYIKGNMRKLDLGTR--------C 344
Query: 511 LGKLFSLTKLILNSNQL--SGGIPLELGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXX 568
L KL +L KL L+ + + S L+L +L LQY++LS N+ ++
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 569 XXXXXQFSQKIPIEVEKLIHLSE-LDLSYNFLDEEMPFQICNMKSLEKLNLCHN------ 621
K P + +HL L+LS+ LD + ++ L LNL N
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGS 464
Query: 622 ---------------------NLSGFIPRCFEGMHNLSHIDISYNELQG 649
NL + F G+ N++H+D+S+N L G
Sbjct: 465 ISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 118/292 (40%), Gaps = 30/292 (10%)
Query: 216 FDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPS-VIGNL 274
+ +P + + SL L L+ N L + + +L LY+ N + + + L
Sbjct: 289 LNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKL 348
Query: 275 KSLLQLDLSENQLSGS--IPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHI 332
++L +LDLS + + S L L NL L ++L N G L L +
Sbjct: 349 ENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAF 408
Query: 333 NQLNGVIPASIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELDLCTNRLSGAIPHSIS 392
L+ P S P + +L + L C L + H ++
Sbjct: 409 THLHVKAPHS---------------------PFQNLHLLRVLNLSHCL--LDTSNQHLLA 445
Query: 393 NLTELVLVNICENHF-FGPIPKS--LRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLD 449
L +L +N+ N F G I K+ L+ + SLE + + NL +AF N+ LD
Sbjct: 446 GLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLD 505
Query: 450 FSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSN 501
S N+ G+ S + + K N + NNI P + LS+ +++LS N
Sbjct: 506 LSHNSLTGD-SMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 230 STLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSG 289
+T+D S L+ + G + +LYLY N ++ P V L L +LDL NQL+
Sbjct: 12 TTVDCSGKSLASV---PTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 290 SIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGL 330
L+ LT +SL N L NLKSL+ + L
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 467 PKLCTFNASMNNIYG----SIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLIL 522
P C+ + + + G S+PT I + QVL L N I P +L LT+L L
Sbjct: 4 PSQCSCSGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDL 61
Query: 523 NSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPK 557
++NQL+ LT+L + L+ N+L+S IP+
Sbjct: 62 DNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPR 95
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 234 LSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPL 293
L NQ++ L P L+ L L L +N L+ V L L QL L++NQL SIP
Sbjct: 37 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPR 95
Query: 294 -SLGNLSSLTVMSLFSN 309
+ NL SLT + L +N
Sbjct: 96 GAFDNLKSLTHIWLLNN 112
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 33/78 (42%)
Query: 208 FYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHI 267
YL +N + P V L L+ LDL NQL+ L L+ L L L N L
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 268 PSVIGNLKSLLQLDLSEN 285
NLKSL + L N
Sbjct: 95 RGAFDNLKSLTHIWLLNN 112
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%)
Query: 131 SELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNN 190
+ Q L L NQ+T + P L QL L D NQL +L + +L+L N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 191 LHGPIPPSLGNLSNLANFYLNNN 213
L + NL +L + +L NN
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 230 STLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSG 289
+T+D S L+ +P + + +LYLY N ++ P V L L +LDL NQL+
Sbjct: 20 TTVDCSGKSLAS-VPTGIPTTTQ--VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 290 SIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGL 330
L+ LT +SL N L NLKSL+ + L
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 117
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 467 PKLCTFNASMNNIYG----SIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLIL 522
P C+ + + + G S+PT I + QVL L N I P +L LT+L L
Sbjct: 12 PSQCSCSGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDL 69
Query: 523 NSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPK 557
++NQL+ LT+L + L+ N+L+S IP+
Sbjct: 70 DNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPR 103
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 234 LSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPL 293
L NQ++ L P L+ L L L +N L+ V L L QL L++NQL SIP
Sbjct: 45 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPR 103
Query: 294 -SLGNLSSLTVMSLFSN 309
+ NL SLT + L +N
Sbjct: 104 GAFDNLKSLTHIWLLNN 120
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 33/78 (42%)
Query: 208 FYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHI 267
YL +N + P V L L+ LDL NQL+ L L+ L L L N L
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 102
Query: 268 PSVIGNLKSLLQLDLSEN 285
NLKSL + L N
Sbjct: 103 RGAFDNLKSLTHIWLLNN 120
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%)
Query: 131 SELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNN 190
+ Q L L NQ+T + P L QL L D NQL +L + +L+L N
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 191 LHGPIPPSLGNLSNLANFYLNNN 213
L + NL +L + +L NN
Sbjct: 98 LKSIPRGAFDNLKSLTHIWLLNN 120
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 74/177 (41%), Gaps = 26/177 (14%)
Query: 131 SELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNN 190
+E + LDLG N+ I LNQ E + EL L N
Sbjct: 32 TETRLLDLGKNR--------IKTLNQ----------------DEFASFPHLEELELNENI 67
Query: 191 LHGPIPPSLGNLSNLANFYLNNNSLFDSIPL-VLGNLKSLSTLDLSKNQLSGLIPFSLGN 249
+ P + NL NL L +N L IPL V L +L+ LD+S+N++ L+ + +
Sbjct: 68 VSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126
Query: 250 LSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSL 306
L NL L + N L L SL QL L + L+ +L +L L V+ L
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 106/248 (42%), Gaps = 4/248 (1%)
Query: 97 TLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQ 156
TL + F+SFPHL L L+ NIV P NL L+ L L SN+L + L+
Sbjct: 46 TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105
Query: 157 LRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLF 216
L L N++ + L + L + N+L + L++L L +L
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL- 164
Query: 217 DSIPL-VLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYL-YSNSLSGHIPSVIGNL 274
SIP L +L L L L ++ + +S L L +L + + L P+ + L
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224
Query: 275 KSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQ 334
+L L ++ L+ L++ +L L ++L N +S +L L L + L Q
Sbjct: 225 -NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283
Query: 335 LNGVIPAS 342
L V P +
Sbjct: 284 LAVVEPYA 291
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 65/162 (40%), Gaps = 12/162 (7%)
Query: 182 NELALCHNNLHGPIPPSLGNLSNLANFYLN-----NNSLFDSIPLVLGNLKSLSTLDLSK 236
+ LCH +P + + L + N N F S P L L+L++
Sbjct: 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFP-------HLEELELNE 65
Query: 237 NQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLG 296
N +S + P + NL NL L L SN L V L +L +LD+SEN++ +
Sbjct: 66 NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125
Query: 297 NLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGV 338
+L +L + + N L L SL L L L +
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 582 EVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHID 641
E HL EL+L+ N + P N+ +L L L N L F G+ NL+ +D
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110
Query: 642 ISYNEL 647
IS N++
Sbjct: 111 ISENKI 116
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 109/286 (38%), Gaps = 4/286 (1%)
Query: 363 VPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLE 422
VPE I + LDL NR+ ++ L + + EN P + NL +L
Sbjct: 26 VPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83
Query: 423 RVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGS 482
+ N L F NLT LD S+N + + +++ L + N++
Sbjct: 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143
Query: 483 IPTEIGDLSKLQVLDLSSNHIVGEIPVQ-LGKLFSLTKLILNSNQLSGGIPLELGSLTEL 541
L+ L+ L L ++ IP + L L L L L ++ L L
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202
Query: 542 QYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVEKLIHLSELDLSYNFLDE 601
+ +++S + + + + V L++L L+LSYN +
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262
Query: 602 EMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL 647
+ + L+++ L L+ P F G++ L +++S N+L
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%)
Query: 362 FVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSL 421
VP+E+ K + +DL NR+S S SN+T+L+ + + N P++ L SL
Sbjct: 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 422 ERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNW 463
+ + N++S AF L+ L N Y + + W
Sbjct: 105 RLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQW 146
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 256 LYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFI 315
LYL N + +P + N K L +DLS N++S S N++ L + L N L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 316 PPILGNLKSLSALGLHINQLNGVIP 340
P LKSL L LH N ++ V+P
Sbjct: 95 PRTFDGLKSLRLLSLHGNDIS-VVP 118
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 46/97 (47%)
Query: 120 FGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLN 179
F +P ++ N L +DL +N+++ + Q ++ QL +L N+L P L
Sbjct: 43 FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK 102
Query: 180 LINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLF 216
+ L+L N++ + +LS L++ + N L+
Sbjct: 103 SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 579 IPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLS 638
+P E+ HL+ +DLS N + NM L L L +N L PR F+G+ +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 639 HIDISYNEL 647
+ + N++
Sbjct: 106 LLSLHGNDI 114
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%)
Query: 195 IPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLG 254
+P L N +L L+NN + N+ L TL LS N+L + P + L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 255 ILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQL 287
+L L+ N +S +L +L L + N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 25/132 (18%)
Query: 516 SLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQF 575
+T+L L+ NQ + +P EL + L IDLS N++ + +S +
Sbjct: 32 DVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFS--------------- 75
Query: 576 SQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMH 635
+ L L LSYN L P +KSL L+L N++S F +
Sbjct: 76 ---------NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126
Query: 636 NLSHIDISYNEL 647
LSH+ I N L
Sbjct: 127 ALSHLAIGANPL 138
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 85 ISINLSSMGLNG---TLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSN 141
I +++ + L+G TL S++ HL ++LS N + N+++L L L N
Sbjct: 29 IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88
Query: 142 QLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPE--IGQLNLINELALCHNNLH 192
+L + P+ L LR L N + S+ PE L+ ++ LA+ N L+
Sbjct: 89 RLRCIPPRTFDGLKSLRLLSLHGNDI--SVVPEGAFNDLSALSHLAIGANPLY 139
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 26/192 (13%)
Query: 128 GNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALC 187
+S +LD +N LT + + GHL +L +L +NQL +L+ I E+
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL--------KELSKIAEMT-- 370
Query: 188 HNNLHGPIPPSLGNLSNLANFYLNNNSL-FDSIPLVLGNLKSLSTLDLSKNQLSGLIPFS 246
+ +L ++ NS+ +D KSL +L++S N L+ I
Sbjct: 371 ------------TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418
Query: 247 LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSL 306
L + +L L+SN + IP + L++L +L+++ NQL L+SL + L
Sbjct: 419 LP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475
Query: 307 FSNSLSGFIPPI 318
+N P I
Sbjct: 476 HTNPWDCSCPRI 487
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 14/117 (11%)
Query: 57 ATNVPSYSKAKLSPCAWVGISCNQAERVISINLSSMGLNGTLQEFAFSSFPHLVR-LNLS 115
+ N SY + K C+W + ++S+N+SS L T+ F P ++ L+L
Sbjct: 382 SQNSVSYDEKK-GDCSW-------TKSLLSLNMSSNILTDTI----FRCLPPRIKVLDLH 429
Query: 116 FNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIP 172
N + +IP QV L LQ L++ SNQL V L L+ ++ N S P
Sbjct: 430 SNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 90/195 (46%), Gaps = 20/195 (10%)
Query: 87 INLSSMGLNGT--LQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLT 144
+N+ + ++GT + S + L+ S N++ T+ G+L+EL+ L L NQL
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361
Query: 145 GVIPQEIGHL-NQLRSL-YFDVNQLHGSIPPEIGQLNLINELA-------LCHNNLHGPI 195
+ +I + Q++SL D++Q S + G + L + + + +
Sbjct: 362 EL--SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419
Query: 196 PPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGI 255
PP + L L++N + SIP + L++L L+++ NQL + L++L
Sbjct: 420 PPRIKVLD------LHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK 472
Query: 256 LYLYSNSLSGHIPSV 270
++L++N P +
Sbjct: 473 IWLHTNPWDCSCPRI 487
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 39/167 (23%)
Query: 232 LDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLS--GHIPSVIGNLKSLLQLDLSENQLS- 288
LD S N L+ + + G+L+ L L L N L I + +KSL QLD+S+N +S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 289 ----GSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIX 344
G + LS ++ ++++ +PP + L LH N++ +
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP------RIKVLDLHSNKIKSI------ 436
Query: 345 XXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELDLCTNRLSGAIPHSI 391
P+++ L+++ EL++ +N+L ++P I
Sbjct: 437 -------------------PKQVVKLEALQELNVASNQL-KSVPDGI 463
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 374 FELDLCTNRLSGAIPHSISNLTELVLVNICENHF--FGPIPKSLRNLTSLERVRFNQNNL 431
LD N L+ + + +LTEL + + N I + + SL+++ +QN++
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386
Query: 432 SGKVYEA-FGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDL 490
S + + +L L+ S N I +R P +N SIP ++ L
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTI---FRCLPPRIKVLDLHSNKIKSIPKQVVKL 443
Query: 491 SKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIP 532
LQ L+++SN + +L SL K+ L++N P
Sbjct: 444 EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 109 LVRLNLSFNIVFGTIP--PQVGNLSELQYLDLGSNQL--TGVIPQEIGHLN 155
L L+LSFN F +P + GN+S+L++L L + L + V+P I HLN
Sbjct: 92 LKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP--IAHLN 139
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 230 STLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSG 289
+T+D S L+ +P + + +LYLY N ++ P V L L +LDL NQL+
Sbjct: 12 TTVDCSGKSLAS-VPTGIPTTTQ--VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 290 SIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGL 330
L+ LT +SL N L NL+SL+ + L
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWL 109
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 467 PKLCTFNASMNNIYG----SIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLIL 522
P C+ + + + G S+PT I + QVL L N I P +L LT+L L
Sbjct: 4 PSQCSCSGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDL 61
Query: 523 NSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPK 557
++NQL+ LT+L + L+ N+L+S IP+
Sbjct: 62 DNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPR 95
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 234 LSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPL 293
L N+++ L P L+ L L L +N L+ V L L QL L++NQL SIP
Sbjct: 37 LYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPR 95
Query: 294 -SLGNLSSLTVMSLFSN 309
+ NL SLT + L +N
Sbjct: 96 GAFDNLRSLTHIWLLNN 112
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 33/78 (42%)
Query: 208 FYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHI 267
YL +N + P V L L+ LDL NQL+ L L+ L L L N L
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 268 PSVIGNLKSLLQLDLSEN 285
NL+SL + L N
Sbjct: 95 RGAFDNLRSLTHIWLLNN 112
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 102 AFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLY 161
AF HL++LNLS N + NL +L+ LDL N + + Q L L+ L
Sbjct: 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377
Query: 162 FDVNQLHGSIPPEI-GQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNS 214
D NQL S+P I +L + ++ L H N P + LS +LN NS
Sbjct: 378 LDTNQLK-SVPDGIFDRLTSLQKIWL-HTNPWDCSCPRIDYLSR----WLNKNS 425
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 26/158 (16%)
Query: 401 NICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEIS 460
++ ++ F + + T LE++ QN ++ AF +L L+ SQ
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ-------- 332
Query: 461 FNWRNFPKLCTFNASMNNIYGSIPTEI-GDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTK 519
N GSI + + +L KL+VLDLS NHI L +L +
Sbjct: 333 -----------------NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375
Query: 520 LILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPK 557
L L++NQL LT LQ I L N P+
Sbjct: 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 586 LIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
L HL +L+LS NFL N+ LE L+L +N++ + F G+ NL + + N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 646 ELQGPIPN 653
+L+ +P+
Sbjct: 382 QLKS-VPD 388
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 589 LSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
L +L L+ N +++ + L KLNL N L R FE + L +D+SYN ++
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360
Query: 649 G 649
Sbjct: 361 A 361
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 5/152 (3%)
Query: 187 CHNNLHGPIPPSLGNLSNLANFYLNNN--SLFDSIPLVLGNLKSLSTLDLSKNQLSGLIP 244
C N IP + + A LNNN ++ ++ + L L ++ S N+++ +
Sbjct: 18 CSNQKLNKIPEHIPQYT--AELRLNNNEFTVLEATG-IFKKLPQLRKINFSNNKITDIEE 74
Query: 245 FSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVM 304
+ S + + L SN L + L+SL L L N+++ S LSS+ ++
Sbjct: 75 GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134
Query: 305 SLFSNSLSGFIPPILGNLKSLSALGLHINQLN 336
SL+ N ++ P L SLS L L N N
Sbjct: 135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 56 NATNVPSYSKAKLSPCAWVGISCNQAERVISINLSSMGLNGTLQEFAFSSFPHLVRLNLS 115
N+ N +Y + CAW AE ++ +NLSS L G++ F P V++
Sbjct: 413 NSLNSHAYDRT----CAW-------AESILVLNLSSNMLTGSV----FRCLPPKVKVLDL 457
Query: 116 FNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIP 172
N +IP V +L LQ L++ SNQL V L L+ ++ N + P
Sbjct: 458 HNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 416 RNLTSLERVRFNQNNLSGKVYE-AFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNA 474
+N++SLE + + N+L+ Y+ + ++ L+ S N G + +R P
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLD 456
Query: 475 SMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIP 532
NN SIP ++ L LQ L+++SN + +L SL + L+ N P
Sbjct: 457 LHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 86/218 (39%), Gaps = 57/218 (26%)
Query: 191 LHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSL--G 248
+H PPS + + L NF N DS+ LK L TL L +N L +L
Sbjct: 344 IHMVCPPSPSSFTFL-NF--TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400
Query: 249 NLSNLGILYLYSNSLSGHI-PSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLF 307
N+S+L L + NSL+ H +S+L L+LS N L+GS+ L
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL------------ 448
Query: 308 SNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXXXXXXXXXXXXXXXFVPEEI 367
PP + L LH N++ + P+++
Sbjct: 449 --------PP------KVKVLDLHNNRIMSI-------------------------PKDV 469
Query: 368 GYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICEN 405
+L+++ EL++ +N+L LT L + + +N
Sbjct: 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 72/145 (49%), Gaps = 9/145 (6%)
Query: 419 TSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQN---NFYGEISFNWRNFPKLCTFNAS 475
+S + F QN + V++ L L +N NF+ +++ +N L T + S
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF-KVALMTKNMSSLETLDVS 411
Query: 476 MNNIYGSIPTEIGDLSK-LQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLE 534
+N++ ++ + VL+LSSN + G + L + L L++N++ IP +
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRI-MSIPKD 468
Query: 535 LGSLTELQYIDLSANKLRSWIPKSI 559
+ L LQ +++++N+L+S +P +
Sbjct: 469 VTHLQALQELNVASNQLKS-VPDGV 492
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 203 SNLANFYLNNNSLFDSIPL-VLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSN 261
S+ L +N L S+P V L L+ L LS+NQ+ L L+ L ILYL+ N
Sbjct: 28 SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 262 SLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSL-GNLSSLTVMSLFSNSLSGFIPPI 318
L V L L +L L NQL S+P + L+SL + L +N P I
Sbjct: 87 KLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 39/98 (39%)
Query: 241 GLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSS 300
GL G S+ L L SN L V L L +L LS+NQ+ L+
Sbjct: 18 GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77
Query: 301 LTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGV 338
LT++ L N L + L L L L NQL V
Sbjct: 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV 115
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 18/155 (11%)
Query: 71 CAWVGISCN-QAERVISINLSSMGLNGTLQEFAFSSFPH--------LVRLNLSFNIVFG 121
C+ I CN + + + S L+ S PH L +L+LS N +
Sbjct: 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-Q 65
Query: 122 TIPPQV-GNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEI-GQLN 179
++P V L++L L L N+L + L QL+ L D NQL S+P I +L
Sbjct: 66 SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLT 124
Query: 180 LINELALCHNNLHGPIPPSLGNLSNLANFYLNNNS 214
+ ++ L H N P + LS +LN NS
Sbjct: 125 SLQKIWL-HTNPWDCSCPRIDYLSR----WLNKNS 154
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 200 GNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLY 259
G L L L++N L S+PL+ L +L+ LD+S N+L+ L +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 260 SNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGN-LSSLTVMSLFSNSL 311
N L P ++ L +L L+ N L+ +P L N L +L + L NSL
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 89 LSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIP 148
L+ + ++GTL P L L+LS N ++P L L LD+ N+LT +
Sbjct: 67 LTKLQVDGTL--------PVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 149 QEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANF 208
+ L +L+ LY N+L P + + +L+L +N+L L L NL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTL 177
Query: 209 YLNNNSLFDSIP 220
L NSL+ +IP
Sbjct: 178 LLQENSLY-TIP 188
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 229 LSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLS 288
L +L+K Q+ G +P LG L L N L +P + L +L LD+S N+L+
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 289 GSIPL-SLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASI 343
S+PL +L L L + L N L P +L L L L N L +PA +
Sbjct: 114 -SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTE-LPAGL 167
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 200 GNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLY 259
G L L L++N L S+PL+ L +L+ LD+S N+L+ L +L L L LYL
Sbjct: 75 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 260 SNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGN-LSSLTVMSLFSNSL 311
N L P ++ L +L L+ N L+ +P L N L +L + L NSL
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 222 VLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLD 281
V G L L TLDLS NQL L P L L +L + N L+ + L L +L
Sbjct: 73 VDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 131
Query: 282 LSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQL 335
L N+L P L L +SL +N+L+ +L L++L L L N L
Sbjct: 132 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 89 LSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIP 148
L+ + ++GTL P L L+LS N ++P L L LD+ N+LT +
Sbjct: 68 LTKLQVDGTL--------PVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPL 118
Query: 149 QEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANF 208
+ L +L+ LY N+L P + + +L+L +NNL L L NL
Sbjct: 119 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 178
Query: 209 YLNNNSLFDSIP 220
L NSL+ +IP
Sbjct: 179 LLQENSLY-TIP 189
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 227 KSLSTLDLSKN-----QLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLD 281
K + L LS+N L+ L+P++ NL L + G +P V+G L D
Sbjct: 32 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-VLGTL------D 84
Query: 282 LSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPA 341
LS NQL S+PL L +LTV+ + N L+ L L L L L N+L + P
Sbjct: 85 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 143
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 72/182 (39%), Gaps = 39/182 (21%)
Query: 493 LQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLR 552
L +L+ + G +PV L L L+ NQL +PL +L L +D+S N+L
Sbjct: 63 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 114
Query: 553 SWIPKSIAXXXXXXXXXXXXXQFSQKIPI-EVEKLIHLSELDLSYNFLDEEMPFQICNMK 611
S +P+ + L L EL L N L P +
Sbjct: 115 S-------------------------LPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 149
Query: 612 SLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN----STVFKDAHVEGNKG 667
LEKL+L +NNL+ G+ NL + + N L IP S + A + GN
Sbjct: 150 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 208
Query: 668 LC 669
LC
Sbjct: 209 LC 210
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 200 GNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLY 259
G L L L++N L S+PL+ L +L+ LD+S N+L+ L +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 260 SNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGN-LSSLTVMSLFSNSL 311
N L P ++ L +L L+ N L+ +P L N L +L + L NSL
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 222 VLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLD 281
V G L L TLDLS NQL L P L L +L + N L+ + L L +L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 282 LSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQL 335
L N+L P L L +SL +N+L+ +L L++L L L N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 89 LSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIP 148
L+ + ++GTL P L L+LS N ++P L L LD+ N+LT +
Sbjct: 67 LTKLQVDGTL--------PVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 149 QEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANF 208
+ L +L+ LY N+L P + + +L+L +NNL L L NL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 209 YLNNNSLFDSIP 220
L NSL+ +IP
Sbjct: 178 LLQENSLY-TIP 188
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 227 KSLSTLDLSKN-----QLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLD 281
K + L LS+N L+ L+P++ NL L + G +P V+G L D
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-VLGTL------D 83
Query: 282 LSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPA 341
LS NQL S+PL L +LTV+ + N L+ L L L L L N+L + P
Sbjct: 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 72/182 (39%), Gaps = 39/182 (21%)
Query: 493 LQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLR 552
L +L+ + G +PV L L L+ NQL +PL +L L +D+S N+L
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 553 SWIPKSIAXXXXXXXXXXXXXQFSQKIPI-EVEKLIHLSELDLSYNFLDEEMPFQICNMK 611
S +P+ + L L EL L N L P +
Sbjct: 114 S-------------------------LPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 612 SLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN----STVFKDAHVEGNKG 667
LEKL+L +NNL+ G+ NL + + N L IP S + A + GN
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207
Query: 668 LC 669
LC
Sbjct: 208 LC 209
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 200 GNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLY 259
G L L L++N L S+PL+ L +L+ LD+S N+L+ L +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 260 SNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGN-LSSLTVMSLFSNSL 311
N L P ++ L +L L+ N L+ +P L N L +L + L NSL
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 222 VLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLD 281
V G L L TLDLS NQL L P L L +L + N L+ + L L +L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 282 LSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQL 335
L N+L P L L +SL +N+L+ +L L++L L L N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 89 LSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIP 148
L+ + ++GTL P L L+LS N ++P L L LD+ N+LT +
Sbjct: 67 LTKLQVDGTL--------PVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 149 QEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANF 208
+ L +L+ LY N+L P + + +L+L +NNL L L NL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 209 YLNNNSLFDSIP 220
L NSL+ +IP
Sbjct: 178 LLQENSLY-TIP 188
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 227 KSLSTLDLSKN-----QLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLD 281
K + L LS+N L+ L+P++ NL L + G +P V+G L D
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-VLGTL------D 83
Query: 282 LSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPA 341
LS NQL S+PL L +LTV+ + N L+ L L L L L N+L + P
Sbjct: 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 72/182 (39%), Gaps = 39/182 (21%)
Query: 493 LQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLR 552
L +L+ + G +PV L L L+ NQL +PL +L L +D+S N+L
Sbjct: 62 LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 553 SWIPKSIAXXXXXXXXXXXXXQFSQKIPI-EVEKLIHLSELDLSYNFLDEEMPFQICNMK 611
S +P+ + L L EL L N L P +
Sbjct: 114 S-------------------------LPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 612 SLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN----STVFKDAHVEGNKG 667
LEKL+L +NNL+ G+ NL + + N L IP S + A + GN
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207
Query: 668 LC 669
LC
Sbjct: 208 LC 209
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 200 GNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLY 259
G L L L++N L S+PL+ L +L+ LD+S N+L+ L +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 260 SNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGN-LSSLTVMSLFSNSL 311
N L P ++ L +L L+ N L+ +P L N L +L + L NSL
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 222 VLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLD 281
V G L L TLDLS NQL L P L L +L + N L+ + L L +L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 282 LSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQL 335
L N+L P L L +SL +N+L+ +L L++L L L N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 89 LSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIP 148
L+ + ++GTL P L L+LS N ++P L L LD+ N+LT +
Sbjct: 67 LTKLQVDGTL--------PVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 149 QEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANF 208
+ L +L+ LY N+L P + + +L+L +NNL L L NL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 209 YLNNNSLFDSIP 220
L NSL+ +IP
Sbjct: 178 LLQENSLY-TIP 188
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 227 KSLSTLDLSKN-----QLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLD 281
K + L LS+N L+ L+P++ NL L + G +P V+G L D
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-VLGTL------D 83
Query: 282 LSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPA 341
LS NQL S+PL L +LTV+ + N L+ L L L L L N+L + P
Sbjct: 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 72/182 (39%), Gaps = 39/182 (21%)
Query: 493 LQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLR 552
L +L+ + G +PV L L L+ NQL +PL +L L +D+S N+L
Sbjct: 62 LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 553 SWIPKSIAXXXXXXXXXXXXXQFSQKIPI-EVEKLIHLSELDLSYNFLDEEMPFQICNMK 611
S +P+ + L L EL L N L P +
Sbjct: 114 S-------------------------LPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 612 SLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN----STVFKDAHVEGNKG 667
LEKL+L +NNL+ G+ NL + + N L IP S + A + GN
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207
Query: 668 LC 669
LC
Sbjct: 208 LC 209
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 200 GNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLY 259
G L L L++N L S+PL+ L +L+ LD+S N+L+ L +L L L LYL
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 260 SNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGN-LSSLTVMSLFSNSL 311
N L P ++ L +L L+ N L+ +P L N L +L + L NSL
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 222 VLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLD 281
V G L L TLDLS NQL L P L L +L + N L+ + L L +L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 282 LSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQL 335
L N+L P L L +SL +N+L+ +L L++L L L N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 89 LSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIP 148
L+ + ++GTL P L L+LS N ++P L L LD+ N+LT +
Sbjct: 67 LTKLQVDGTL--------PVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 149 QEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANF 208
+ L +L+ LY N+L P + + +L+L +NNL L L NL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 209 YLNNNSLFDSIP 220
L NSL+ +IP
Sbjct: 178 LLQENSLY-TIP 188
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 227 KSLSTLDLSKN-----QLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLD 281
K + L LS+N L+ L+P++ NL L + G +P V+G L D
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-VLGTL------D 83
Query: 282 LSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPA 341
LS NQL S+PL L +LTV+ + N L+ L L L L L N+L + P
Sbjct: 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 72/182 (39%), Gaps = 39/182 (21%)
Query: 493 LQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLR 552
L +L+ + G +PV L L L+ NQL +PL +L L +D+S N+L
Sbjct: 62 LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 553 SWIPKSIAXXXXXXXXXXXXXQFSQKIPI-EVEKLIHLSELDLSYNFLDEEMPFQICNMK 611
S +P+ + L L EL L N L P +
Sbjct: 114 S-------------------------LPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 612 SLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN----STVFKDAHVEGNKG 667
LEKL+L +NNL+ G+ NL + + N L IP S + A + GN
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207
Query: 668 LC 669
LC
Sbjct: 208 LC 209
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 33/177 (18%)
Query: 490 LSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSN---QLSGGIPLELGSLTELQYIDL 546
++LQ LDL++ H+ G +P + L L KL+L+ N QL SLT L YI
Sbjct: 274 FTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHL-YIRG 331
Query: 547 SANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVEKLIHLSELDLSYNFLDEE--MP 604
+ KL + +EKL +L LDLS+N ++
Sbjct: 332 NVKKLHLGVGC-------------------------LEKLGNLQTLDLSHNDIEASDCCS 366
Query: 605 FQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTVFKDAH 661
Q+ N+ L+ LNL HN G + F+ L +D+++ L P S F++ H
Sbjct: 367 LQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSP-FQNLH 422
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 120/299 (40%), Gaps = 35/299 (11%)
Query: 375 ELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQN----N 430
ELDL L G +P + L L + + NHF S N SL + N +
Sbjct: 279 ELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLH 337
Query: 431 LSGKVYEAFGYHPNLTFLDFSQNNFYGE--ISFNWRNFPKLCTFNASMNNIYGSIPTEIG 488
L E G NL LD S N+ S +N L T N S N G
Sbjct: 338 LGVGCLEKLG---NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFK 394
Query: 489 DLSKLQVLDLSSNHIVGEIP------VQLGKLFSLTKLILN-SNQ-LSGGIPLELGSLTE 540
+ +L++LDL+ + P + ++ +LT L+ SNQ L G+P+
Sbjct: 395 ECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPV------- 447
Query: 541 LQYIDLSANKL------RSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVEKLIHLSELDL 594
L++++L N ++ + +++ Q+ + K+ H+ DL
Sbjct: 448 LRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHV---DL 504
Query: 595 SYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN 653
S+N L + + ++K + LNL N+++ PR + S I++S+N L N
Sbjct: 505 SHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCSN 562
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 112/313 (35%), Gaps = 64/313 (20%)
Query: 367 IGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRF 426
+G + I + D+ + L G S+ +L N+ E+ F + + T L+ +
Sbjct: 229 LGTFEDIDDEDISSAMLKGLCEMSVESL------NLQEHRFSDISSTTFQCFTQLQELDL 282
Query: 427 NQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTE 486
+L G G + L L S N+F + NFP L N +
Sbjct: 283 TATHLKGLPSGMKGLNL-LKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN--VKKLHLG 339
Query: 487 IGDLSKL---QVLDLSSNHIVGE--IPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTEL 541
+G L KL Q LDLS N I +QL L L L L+ N+ G +L
Sbjct: 340 VGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQL 399
Query: 542 QYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVEKLIHLSELDLSYNFLDE 601
+ +DL+ +L P+S + L L L+L+Y FLD
Sbjct: 400 ELLDLAFTRLHINAPQS-----------------------PFQNLHFLQVLNLTYCFLDT 436
Query: 602 EMPFQICNMKSLEKLNLCHNNL-SGFIPR--------------------------CFEGM 634
+ + L LNL N+ G I + F +
Sbjct: 437 SNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSL 496
Query: 635 HNLSHIDISYNEL 647
+SH+D+S+N L
Sbjct: 497 GKMSHVDLSHNSL 509
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 232 LDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSI 291
LDL N L L L++L LYL N L V L SL L+LS NQL S+
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91
Query: 292 PLSL-GNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGV 338
P + L+ L ++L +N L + L L L L+ NQL V
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV 139
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 58/139 (41%), Gaps = 9/139 (6%)
Query: 202 LSNLANFYLNNNSLFDSIP-LVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYS 260
L++L YL N L S+P V L SL+ L+LS NQL L L+ L L L +
Sbjct: 51 LTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109
Query: 261 NSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILG 320
N L V L L L L +NQL L+SL + L N P I
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI-- 167
Query: 321 NLKSLSALGLHINQLNGVI 339
L IN+ +GV+
Sbjct: 168 -----RYLSEWINKHSGVV 181
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 48/120 (40%)
Query: 222 VLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLD 281
V L SL+ L L N+L L L++L L L +N L V L L +L
Sbjct: 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106
Query: 282 LSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPA 341
L+ NQL L+ L + L+ N L + L SL + LH N + P
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 166
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 2/141 (1%)
Query: 131 SELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEI-GQLNLINELALCHN 189
++ YLDL +N L + L L LY N+L S+P + +L + L L N
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN 86
Query: 190 NLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGN 249
L L+ L LN N L V L L L L +NQL +
Sbjct: 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146
Query: 250 LSNLGILYLYSNSLSGHIPSV 270
L++L ++L+ N P +
Sbjct: 147 LTSLQYIWLHDNPWDCTCPGI 167
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 32/191 (16%)
Query: 467 PKLCTFNASMNNIYG----SIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLIL 522
P C+ + + Y S+PT I ++ LDL +N + +L SLT+L L
Sbjct: 2 PSRCSCSGTTVECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYL 59
Query: 523 NSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPIE 582
N+L LT L Y++LS N+L+S +P +
Sbjct: 60 GGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGV----------------------- 95
Query: 583 VEKLIHLSELDLSYNFLDEEMPFQICN-MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHID 641
+KL L EL L+ N L + +P + + + L+ L L N L F+ + +L +I
Sbjct: 96 FDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154
Query: 642 ISYNELQGPIP 652
+ N P
Sbjct: 155 LHDNPWDCTCP 165
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 11/168 (6%)
Query: 55 ANATNVPSYSKAKLSPCAWVGISCNQAERVISINLSSMGLNGTLQEFAFSSFPHLVRLNL 114
+ T V YS+ + S + + ++L + L +L F L +L L
Sbjct: 7 CSGTTVECYSQGRTS------VPTGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYL 59
Query: 115 SFNIVFGTIPPQVGN-LSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPP 173
N ++P V N L+ L YL+L +NQL + L QL+ L + NQL S+P
Sbjct: 60 GGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPD 117
Query: 174 EI-GQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIP 220
+ +L + +L L N L L++L +L++N + P
Sbjct: 118 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 98/444 (22%), Positives = 179/444 (40%), Gaps = 67/444 (15%)
Query: 76 ISCNQAERVISIN---LSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSE 132
IS + +R +++ L+S G+N T++E +FSS L L+LS+N + LS
Sbjct: 41 ISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 99
Query: 133 LQYLDLGSNQLTGVIPQEI-GHLNQLRSLYF-DVNQLHGSIPPEIGQLNLINELALCHNN 190
L +L+L N + + HL +L+ L +++ + L + EL + ++
Sbjct: 100 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 159
Query: 191 LHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSG--LIPFSLG 248
L P SL ++ N+++ L+ + + + S+ L+L L S G
Sbjct: 160 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 219
Query: 249 NLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFS 308
++L + + N V +SL Q+ NQ+SG + L + + V + +
Sbjct: 220 ETNSLIKKFTFRN--------VKITDESLFQVMKLLNQISGLLELEFDDCTLNGVGNFRA 271
Query: 309 NSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXXXXXXXXXXXXXXXF-VPEEI 367
+ I P G +++L+ LHI + S F VP +
Sbjct: 272 SDNDRVIDP--GKVETLTIRRLHIPRFYLFYDLSTLYSLTERVKRITVENSKVFLVPCLL 329
Query: 368 G-YLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRF 426
+LKS+ LDL N + + E + + CE+ + SL+ +
Sbjct: 330 SQHLKSLEYLDLSENLM----------VEEYLKNSACEDAW-----------PSLQTLIL 368
Query: 427 NQNNLSG--KVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASM-------- 476
QN+L+ K E NLT +D S+N+F+ P+ C + M
Sbjct: 369 RQNHLASLEKTGETLLTLKNLTNIDISKNSFHS--------MPETCQWPEKMKYLNLSST 420
Query: 477 --NNIYGSIPTEIGDLSKLQVLDL 498
+++ G IP L++LD+
Sbjct: 421 RIHSVTGCIP------KTLEILDV 438
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 216 FDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLK 275
+SIP G +++ +LDLS N+++ + L NL L L SN ++ +L
Sbjct: 17 LNSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 74
Query: 276 SLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSN 309
SL LDLS N LS LSSLT ++L N
Sbjct: 75 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 108
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 13/156 (8%)
Query: 137 DLGSNQLTG--VIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGP 194
DLGS T + E+ + L+ + Q+ +P I LNL HN L
Sbjct: 2 DLGSASSTTKCTVSHEVADCSHLK-----LTQVPDDLPTNITVLNL------THNQLRRL 50
Query: 195 IPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLG 254
+ S L + + N++ P + L L L+L N+LS L + +NL
Sbjct: 51 PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 110
Query: 255 ILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGS 290
L+L SNS+ + K+L+ LDLS N LS +
Sbjct: 111 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 146
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 140/585 (23%), Positives = 221/585 (37%), Gaps = 52/585 (8%)
Query: 103 FSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYF 162
F+ + L L++ FN + P L L+ L+L N+L+ + + L L+
Sbjct: 55 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 114
Query: 163 DVNQLHG-SIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSL--FDSI 219
N + P + Q NLI L L HN L + L NL L+NN + S
Sbjct: 115 MSNSIQKIKNNPFVKQKNLIT-LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 173
Query: 220 PLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNL----- 274
L + SL L+LS NQ+ P + L L+L + L PS+ L
Sbjct: 174 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG---PSLTEKLCLELA 230
Query: 275 -KSLLQLDLSENQLSGSIPLSLGNL--SSLTVMSLFSNSLSGFIPPILGNLKSLSALGLH 331
S+ L LS +QLS + + L ++LT++ L N+L+ L L L
Sbjct: 231 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 290
Query: 332 INQLNGVIPASI-----XXXXXXXXXXXXXXXXXXFVPE----EIGYLKSIFELDLCTNR 382
N + + S+ +P+ +LK + L++ N
Sbjct: 291 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 350
Query: 383 LSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTS----------LERVRFNQNNLS 432
+ G + + L L +++ N F SLR LT+ L + +N +S
Sbjct: 351 IPGIKSNMFTGLINLKYLSL-SNSF-----TSLRTLTNETFVSLAHSPLHILNLTKNKIS 404
Query: 433 GKVYEAFGYHPNLTFLDFSQNNFYGEIS-FNWRNFPKLCTFNASMNNIYGSIPTEIGDLS 491
+AF + +L LD N E++ WR + S N +
Sbjct: 405 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 464
Query: 492 KLQVLDLSSNHI--VGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSAN 549
LQ L L + V P L +LT L L++N ++ L L +L+ +DL N
Sbjct: 465 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 524
Query: 550 KL-RSWI------PKSIAXXXXXXXXXXXXXQFSQKIPIEVEK-LIHLSELDLSYNFLDE 601
L R W P +IP+EV K L L +DL N L+
Sbjct: 525 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 584
Query: 602 EMPFQICNMKSLEKLNLCHNNLSGFIPRCF-EGMHNLSHIDISYN 645
N SL+ LNL N ++ + F NL+ +D+ +N
Sbjct: 585 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 629
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 106/265 (40%), Gaps = 21/265 (7%)
Query: 229 LSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLS 288
++ L+L+ NQL L + S L L + N++S P + L L L+L N+LS
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 289 GSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXX 348
+ ++LT + L SNS+ K+L L L N L+ +
Sbjct: 97 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 156
Query: 349 XXXXXXXXXXXXXFVPEEIGYL--KSIFELDLCTNRLSGAIP---HSISNLTELVLVNIC 403
EE+ S+ +L+L +N++ P H+I L L L N+
Sbjct: 157 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 216
Query: 404 ENHFFGP-----IPKSLRNLTSLERVRFNQNNLSGKVYEAF-GYH-PNLTFLDFSQNNF- 455
GP + L N TS+ + + + LS F G NLT LD S NN
Sbjct: 217 ----LGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 271
Query: 456 -YGEISFNWRNFPKLCTFNASMNNI 479
G SF W P+L F NNI
Sbjct: 272 VVGNDSFAW--LPQLEYFFLEYNNI 294
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 131 SELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQ-LNLINELALCHN 189
+ + L+L NQL + +QL SL N + + PE+ Q L ++ L L HN
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHN 93
Query: 190 NLHGPIPPSLGNLSNLANFYLNNNSL--FDSIPLVLGNLKSLSTLDLSKNQLSG 241
L + +NL +L +NS+ + P V K+L TLDLS N LS
Sbjct: 94 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV--KQKNLITLDLSHNGLSS 145
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 605 FQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
F I ++K+L++LN+ HN + F +P F + NL H+D+S N++Q
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 3/152 (1%)
Query: 403 CENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFN 462
CE F IP +L T + FN G Y F + P L LD S+
Sbjct: 15 CEELNFYKIPDNLPFSTKNLDLSFNPLRHLGS-YSFFSF-PELQVLDLSRCEIQTIEDGA 72
Query: 463 WRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLIL 522
+++ L T + N I LS LQ L ++ +G L +L +L +
Sbjct: 73 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 132
Query: 523 NSNQL-SGGIPLELGSLTELQYIDLSANKLRS 553
N + S +P +LT L+++DLS+NK++S
Sbjct: 133 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 605 FQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
F I ++K+L++LN+ HN + F +P F + NL H+D+S N++Q
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 605 FQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
F I ++K+L++LN+ HN + F +P F + NL H+D+S N++Q
Sbjct: 120 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 605 FQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
F I ++K+L++LN+ HN + F +P F + NL H+D+S N++Q
Sbjct: 120 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 605 FQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
F I ++K+L++LN+ HN + F +P F + NL H+D+S N++Q
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 104/247 (42%), Gaps = 52/247 (21%)
Query: 225 NLKSLSTLDLSKNQLS----------GLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNL 274
+L SL LDLS+N LS G I +LS G++ + SN L L
Sbjct: 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG---------L 419
Query: 275 KSLLQLDLSENQLSG----SIPLSLGNLSSLTVMSLFSN-SLSGFIPPILGNLKSLSALG 329
+ L LD + L S+ LSL NL L + + + +G I L SL L
Sbjct: 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG----IFNGLSSLEVLK 475
Query: 330 LHINQLNGVIPASIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELDLCTNRLSGAIPH 389
+ N F+P+ L+++ LDL +L P
Sbjct: 476 MAGNSFQ-----------------------ENFLPDIFTELRNLTFLDLSQCQLEQLSPT 512
Query: 390 SISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNN-LSGKVYEAFGYHPNLTFL 448
+ ++L+ L ++N+ N+FF + L SL+ + ++ N+ ++ K E + +L FL
Sbjct: 513 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 572
Query: 449 DFSQNNF 455
+ +QN+F
Sbjct: 573 NLTQNDF 579
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 605 FQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
F I ++K+L++LN+ HN + F +P F + NL H+D+S N++Q
Sbjct: 142 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 121/309 (39%), Gaps = 49/309 (15%)
Query: 408 FGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFP 467
FG P L SL+R+ F N G + P+L FLD S+N +F
Sbjct: 340 FGQFPT--LKLKSLKRLTFTSNK-GGNAFSEVDL-PSLEFLDLSRNGL---------SFK 386
Query: 468 KLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQL 527
C+ + +G+I + DLS V+ +SSN + E QL L + ++
Sbjct: 387 GCCS-----QSDFGTISLKYLDLSFNGVITMSSNFLGLE---QLEHLDFQHSNLKQMSEF 438
Query: 528 SGGIPLELGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQK-IPIEVEKL 586
S + SL L Y+D+S R F + +P +L
Sbjct: 439 SVFL-----SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 493
Query: 587 IHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNN---LSGFIPRCFEGM----HNLSH 639
+L+ LDLS L++ P ++ SL+ LN+ HNN L F +C + ++L+H
Sbjct: 494 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553
Query: 640 IDISYNELQGPIPNSTVFKDAHVEGNKGLCGNVNGFPSCKAFTTCKQASRKKWVVIMFSS 699
I S + P+S F ++ N C TC+ S +W+
Sbjct: 554 IMTSKKQELQHFPSSLAF--LNLTQNDFAC-------------TCEHQSFLQWIKDQRQL 598
Query: 700 LMMVILLIC 708
L+ V + C
Sbjct: 599 LVEVERMEC 607
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 362 FVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSL 421
F+P+ L+++ LDL +L P + ++L+ L ++N+ N+FF + L SL
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225
Query: 422 ERVRFNQNN-LSGKVYEAFGYHPNLTFLDFSQNNF 455
+ + ++ N+ ++ K E + +L FL+ +QN+F
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 404 ENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNW 463
+ +F I LRNLT L+ +Q L AF +L L+ S NNF+ +F +
Sbjct: 163 QENFLPDIFTELRNLTFLD---LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219
Query: 464 RNFPKLCTFNASMNNIYGSIPTEIGDL-SKLQVLDLSSNHIVGEIPVQ 510
+ L + S+N+I S E+ S L L+L+ N Q
Sbjct: 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 579 IPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNN---LSGFIPRCFEGM- 634
+P +L +L+ LDLS L++ P ++ SL+ LN+ HNN L F +C +
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 635 ---HNLSHIDISYNELQGPIPNSTVF 657
++L+HI S + P+S F
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPSSLAF 252
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 199 LGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYL 258
L +L L + YL NN + D VL L L TL L NQ+S ++P L L+ L LYL
Sbjct: 127 LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182
Query: 259 YSNSLS 264
N +S
Sbjct: 183 SKNHIS 188
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 605 FQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
F I ++K+L++LN+ HN + F +P F + NL H+D+S N++Q
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 362 FVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSL 421
F+P+ L+++ LDL +L P + ++L+ L ++N+ N+FF + L SL
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520
Query: 422 ERVRFNQNN-LSGKVYEAFGYHPNLTFLDFSQNNF 455
+ + ++ N+ ++ K E + +L FL+ +QN+F
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 115/294 (39%), Gaps = 49/294 (16%)
Query: 408 FGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFP 467
FG P L SL+R+ F N G + P+L FLD S+N +F
Sbjct: 316 FGQFPT--LKLKSLKRLTFTSNK-GGNAFSEVDL-PSLEFLDLSRNGL---------SFK 362
Query: 468 KLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQL 527
C+ + +G+ + DLS V+ +SSN + E QL L + ++
Sbjct: 363 GCCS-----QSDFGTTSLKYLDLSFNGVITMSSNFLGLE---QLEHLDFQHSNLKQMSEF 414
Query: 528 SGGIPLELGSLTELQYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQK-IPIEVEKL 586
S + SL L Y+D+S R F + +P +L
Sbjct: 415 SVFL-----SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 587 IHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNN---LSGFIPRCFEGM----HNLSH 639
+L+ LDLS L++ P ++ SL+ LN+ HNN L F +C + ++L+H
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529
Query: 640 IDISYNELQGPIPNSTVFKDAHVEGNKGLCGNVNGFPSCKAFTTCKQASRKKWV 693
I S + P+S F ++ N C TC+ S +W+
Sbjct: 530 IMTSKKQELQHFPSSLAF--LNLTQNDFAC-------------TCEHQSFLQWI 568
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 199 LGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYL 258
L +L L + YL NN + D VL L L TL L NQ+S ++P L L+ L LYL
Sbjct: 128 LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 183
Query: 259 YSNSLS 264
N +S
Sbjct: 184 SKNHIS 189
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 9/119 (7%)
Query: 199 LGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYL 258
L +L L + YL NN + D VL L L TL L NQ+ ++P L L+ L LYL
Sbjct: 128 LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYL 183
Query: 259 YSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPP 317
N +S + L+ L LD+ E ++ + + S+L V + N+ + P
Sbjct: 184 SKNHISD-----LRALRGLKNLDVLELFSQEALNKPINHQSNLVVPNTVKNTDGSLVTP 237
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 199 LGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYL 258
L +L L + YL NN + D VL L L TL L NQ+S ++P L L+ L LYL
Sbjct: 130 LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185
Query: 259 YSNSLS 264
N +S
Sbjct: 186 SKNHIS 191
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 91/239 (38%), Gaps = 43/239 (17%)
Query: 439 FGYHPNLTFLDFSQNNFYG--EISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVL 496
G ++ D S F G E+S N K FN S N + S LQ L
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC--------FSGLQEL 283
Query: 497 DLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIP 556
DL++ H+ E+P L L +L KL+L++N+ + + L ++ + N R +
Sbjct: 284 DLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342
Query: 557 KSIAXXX---XXXXXXXXXXQFSQKIPIEVEKLIHLSELDLSYN---------------- 597
+ S +++ L HL L+LSYN
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402
Query: 598 -----------FLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
D + PFQ N+ L+ LNL H+ L + F+G+ L H+++ N
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQ--NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 115/256 (44%), Gaps = 28/256 (10%)
Query: 98 LQEFAFSSFPHLVRLNLSFN---IVFGTIPPQVGNLSELQYLDLGSNQL--TGVIPQEIG 152
L + + S+FP L L++ N + GT + NL L+ LDL + + + ++
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGT--GCLENLENLRELDLSHDDIETSDCCNLQLR 373
Query: 153 HLNQLRSLYFDVNQ---LHGSIPPEIGQLNLINELALCHNNLHGPIPP----SLGNLSNL 205
+L+ L+SL N+ L E QL L+ +LA + P L + NL
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELL-DLAFTRLKVKDAQSPFQNLHLLKVLNL 432
Query: 206 ANFYLNNNS--LFDSIPLVLGNLKSLSTLDLSKNQL-SGLIPF--SLGNLSNLGILYLYS 260
++ L+ +S LFD +P +L L+L N G I SL L L IL L
Sbjct: 433 SHSLLDISSEQLFDGLP-------ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485
Query: 261 NSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILG 320
LS +LK + +DLS N+L+ S +L +L + ++L SN +S +P +L
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP 544
Query: 321 NLKSLSALGLHINQLN 336
L + L N L+
Sbjct: 545 ILSQQRTINLRQNPLD 560
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 113/256 (44%), Gaps = 15/256 (5%)
Query: 76 ISCNQAERVISIN---LSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSE 132
IS + +R +++ L+S G+N T++E +FSS L L+LS+N + LS
Sbjct: 67 ISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125
Query: 133 LQYLDLGSNQLTGVIPQEI-GHLNQLRSLYF-DVNQLHGSIPPEIGQLNLINELALCHNN 190
L +L+L N + + HL +L+ L +++ + L + EL + ++
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185
Query: 191 LHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSG--LIPFSLG 248
L P SL ++ N+++ L+ + + + S+ L+L L S G
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245
Query: 249 NLSNLGILYLYSNSLSG-----HIPSVIGNLKSLLQLDLSENQLSGSIPLSL-GNLSSLT 302
++L + + N + ++ + LL+L+ S NQL S+P + L+SL
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQ 304
Query: 303 VMSLFSNSLSGFIPPI 318
+ L +N P I
Sbjct: 305 KIWLHTNPWDCSCPRI 320
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 216 FDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLK 275
+SIP G +++ +LDLS N+++ + L NL L L SN ++ +L
Sbjct: 43 LNSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100
Query: 276 SLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSN 309
SL LDLS N LS LSSLT ++L N
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 199 LGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYL 258
L +L L + YL NN + D VL L L TL L NQ+S ++P L L+ L LYL
Sbjct: 130 LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185
Query: 259 YSNSLS 264
N +S
Sbjct: 186 SKNHIS 191
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 140/585 (23%), Positives = 221/585 (37%), Gaps = 52/585 (8%)
Query: 103 FSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYF 162
F+ + L L++ FN + P L L+ L+L N+L+ + + L L+
Sbjct: 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104
Query: 163 DVNQLHG-SIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSL--FDSI 219
N + P + Q NLI L L HN L + L NL L+NN + S
Sbjct: 105 MSNSIQKIKNNPFVKQKNLIT-LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163
Query: 220 PLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNL----- 274
L + SL L+LS NQ+ P + L L+L + L PS+ L
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG---PSLTEKLCLELA 220
Query: 275 -KSLLQLDLSENQLSGSIPLSLGNL--SSLTVMSLFSNSLSGFIPPILGNLKSLSALGLH 331
S+ L LS +QLS + + L ++LT++ L N+L+ L L L
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280
Query: 332 INQLNGVIPASI-----XXXXXXXXXXXXXXXXXXFVPE----EIGYLKSIFELDLCTNR 382
N + + S+ +P+ +LK + L++ N
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340
Query: 383 LSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTS----------LERVRFNQNNLS 432
+ G + + L L +++ N F SLR LT+ L + +N +S
Sbjct: 341 IPGIKSNMFTGLINLKYLSL-SNSF-----TSLRTLTNETFVSLAHSPLHILNLTKNKIS 394
Query: 433 GKVYEAFGYHPNLTFLDFSQNNFYGEIS-FNWRNFPKLCTFNASMNNIYGSIPTEIGDLS 491
+AF + +L LD N E++ WR + S N +
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454
Query: 492 KLQVLDLSSNHI--VGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSAN 549
LQ L L + V P L +LT L L++N ++ L L +L+ +DL N
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514
Query: 550 KL-RSWI------PKSIAXXXXXXXXXXXXXQFSQKIPIEVEK-LIHLSELDLSYNFLDE 601
L R W P +IP+EV K L L +DL N L+
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574
Query: 602 EMPFQICNMKSLEKLNLCHNNLSGFIPRCF-EGMHNLSHIDISYN 645
N SL+ LNL N ++ + F NL+ +D+ +N
Sbjct: 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 161 YFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIP 220
+ + Q+ +P I LNL HN L + S L + + N++ P
Sbjct: 13 HLKLTQVPDDLPTNITVLNL------THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66
Query: 221 LVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQL 280
+ L L L+L N+LS L + +NL L+L SNS+ + K+L+ L
Sbjct: 67 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126
Query: 281 DLSENQLSGS 290
DLS N LS +
Sbjct: 127 DLSHNGLSST 136
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 106/265 (40%), Gaps = 21/265 (7%)
Query: 229 LSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLS 288
++ L+L+ NQL L + S L L + N++S P + L L L+L N+LS
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 289 GSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXX 348
+ ++LT + L SNS+ K+L L L N L+ +
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146
Query: 349 XXXXXXXXXXXXXFVPEEIGYL--KSIFELDLCTNRLSGAIP---HSISNLTELVLVNIC 403
EE+ S+ +L+L +N++ P H+I L L L N+
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206
Query: 404 ENHFFGP-----IPKSLRNLTSLERVRFNQNNLSGKVYEAF-GYH-PNLTFLDFSQNNF- 455
GP + L N TS+ + + + LS F G NLT LD S NN
Sbjct: 207 ----LGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261
Query: 456 -YGEISFNWRNFPKLCTFNASMNNI 479
G SF W P+L F NNI
Sbjct: 262 VVGNDSFAW--LPQLEYFFLEYNNI 284
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 131 SELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQ-LNLINELALCHN 189
+ + L+L NQL + +QL SL N + + PE+ Q L ++ L L HN
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHN 83
Query: 190 NLHGPIPPSLGNLSNLANFYLNNNSL--FDSIPLVLGNLKSLSTLDLSKNQLSG 241
L + +NL +L +NS+ + P V K+L TLDLS N LS
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV--KQKNLITLDLSHNGLSS 135
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%)
Query: 205 LANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLS 264
+ L N++ P K L +DLS NQ+S L P + L +L L LY N ++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 265 GHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKS 324
S+ L SL L L+ N+++ + +L +L ++SL+ N L L++
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 325 LSALGLHIN 333
+ + L N
Sbjct: 154 IQTMHLAQN 162
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%)
Query: 205 LANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLS 264
+ L N++ P K L +DLS NQ+S L P + L +L L LY N ++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 265 GHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKS 324
S+ L SL L L+ N+++ + +L +L ++SL+ N L L++
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 325 LSALGLHIN 333
+ + L N
Sbjct: 154 IQTMHLAQN 162
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 93/225 (41%), Gaps = 12/225 (5%)
Query: 90 SSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQ 149
+ L T ++ P V L L ++ P Q LS LQ+ + + L +P
Sbjct: 64 TGRALKATADLLEDATQPGRVALELR-SVPLPQFPDQAFRLSHLQHXTIDAAGLXE-LPD 121
Query: 150 EIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELAL--CHNNLHGPIPPSLGNLSNLAN 207
L +L N L ++P I LN + EL++ C P P + + S
Sbjct: 122 TXQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180
Query: 208 FYLNNNSL------FDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSN 261
+N SL S+P + NL++L +L + + LS L P ++ +L L L L
Sbjct: 181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGC 239
Query: 262 SLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSL 306
+ + P + G L +L L + ++PL + L+ L + L
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 487 IGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILN--SNQLSGGIPLELGSLTELQYI 544
I L KL+ LDL + P G L +LIL SN L+ +PL++ LT+L+ +
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT--LPLDIHRLTQLEKL 282
Query: 545 DLSANKLRSWIPKSIA 560
DL S +P IA
Sbjct: 283 DLRGCVNLSRLPSLIA 298
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 199 LGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYL 258
L +L L + YL NN + D VL L L TL L NQ+S ++P L L+ L LYL
Sbjct: 125 LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYL 180
Query: 259 YSNSLSG 265
N +S
Sbjct: 181 SKNHISD 187
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 140/585 (23%), Positives = 221/585 (37%), Gaps = 52/585 (8%)
Query: 103 FSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYF 162
F+ + L L++ FN + P L L+ L+L N+L+ + + L L+
Sbjct: 50 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 109
Query: 163 DVNQLHG-SIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSL--FDSI 219
N + P + Q NLI L L HN L + L NL L+NN + S
Sbjct: 110 MSNSIQKIKNNPFVKQKNLIT-LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 168
Query: 220 PLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNL----- 274
L + SL L+LS NQ+ P + L L+L + L PS+ L
Sbjct: 169 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG---PSLTEKLCLELA 225
Query: 275 -KSLLQLDLSENQLSGSIPLSLGNL--SSLTVMSLFSNSLSGFIPPILGNLKSLSALGLH 331
S+ L LS +QLS + + L ++LT++ L N+L+ L L L
Sbjct: 226 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 285
Query: 332 INQLNGVIPASI-----XXXXXXXXXXXXXXXXXXFVPE----EIGYLKSIFELDLCTNR 382
N + + S+ +P+ +LK + L++ N
Sbjct: 286 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 345
Query: 383 LSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTS----------LERVRFNQNNLS 432
+ G + + L L +++ N F SLR LT+ L + +N +S
Sbjct: 346 IPGIKSNMFTGLINLKYLSL-SNSF-----TSLRTLTNETFVSLAHSPLHILNLTKNKIS 399
Query: 433 GKVYEAFGYHPNLTFLDFSQNNFYGEIS-FNWRNFPKLCTFNASMNNIYGSIPTEIGDLS 491
+AF + +L LD N E++ WR + S N +
Sbjct: 400 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 459
Query: 492 KLQVLDLSSNHI--VGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSAN 549
LQ L L + V P L +LT L L++N ++ L L +L+ +DL N
Sbjct: 460 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 519
Query: 550 KL-RSWI------PKSIAXXXXXXXXXXXXXQFSQKIPIEVEK-LIHLSELDLSYNFLDE 601
L R W P +IP+EV K L L +DL N L+
Sbjct: 520 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 579
Query: 602 EMPFQICNMKSLEKLNLCHNNLSGFIPRCF-EGMHNLSHIDISYN 645
N SL+ LNL N ++ + F NL+ +D+ +N
Sbjct: 580 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 624
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 161 YFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIP 220
+ + Q+ +P I LNL HN L + S L + + N++ P
Sbjct: 18 HLKLTQVPDDLPTNITVLNL------THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 71
Query: 221 LVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQL 280
+ L L L+L N+LS L + +NL L+L SNS+ + K+L+ L
Sbjct: 72 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 131
Query: 281 DLSENQLSGS 290
DLS N LS +
Sbjct: 132 DLSHNGLSST 141
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 106/265 (40%), Gaps = 21/265 (7%)
Query: 229 LSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLS 288
++ L+L+ NQL L + S L L + N++S P + L L L+L N+LS
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 289 GSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIXXXXX 348
+ ++LT + L SNS+ K+L L L N L+ +
Sbjct: 92 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 151
Query: 349 XXXXXXXXXXXXXFVPEEIGYL--KSIFELDLCTNRLSGAIP---HSISNLTELVLVNIC 403
EE+ S+ +L+L +N++ P H+I L L L N+
Sbjct: 152 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 211
Query: 404 ENHFFGP-----IPKSLRNLTSLERVRFNQNNLSGKVYEAF-GYH-PNLTFLDFSQNNF- 455
GP + L N TS+ + + + LS F G NLT LD S NN
Sbjct: 212 ----LGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 266
Query: 456 -YGEISFNWRNFPKLCTFNASMNNI 479
G SF W P+L F NNI
Sbjct: 267 VVGNDSFAW--LPQLEYFFLEYNNI 289
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 131 SELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQ-LNLINELALCHN 189
+ + L+L NQL + +QL SL N + + PE+ Q L ++ L L HN
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHN 88
Query: 190 NLHGPIPPSLGNLSNLANFYLNNNSL--FDSIPLVLGNLKSLSTLDLSKNQLSG 241
L + +NL +L +NS+ + P V K+L TLDLS N LS
Sbjct: 89 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV--KQKNLITLDLSHNGLSS 140
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 199 LGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYL 258
L +L L + YL NN + D VL L L TL L NQ+S ++P L L+ L LYL
Sbjct: 148 LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 203
Query: 259 YSNSLS 264
N +S
Sbjct: 204 SKNHIS 209
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 28/149 (18%)
Query: 202 LSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQL-------------------SGL 242
L N+ +LN N L D PL NLK+L L L +N++ +G+
Sbjct: 85 LPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI 142
Query: 243 IPFS-LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSL 301
+ L +L L LYL +N ++ +V+ L L L L +NQ+S +PL+ L+ L
Sbjct: 143 SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLA--GLTKL 198
Query: 302 TVMSLFSNSLSGFIPPILGNLKSLSALGL 330
+ L N +S L LK+L L L
Sbjct: 199 QNLYLSKNHISDL--RALAGLKNLDVLEL 225
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 199 LGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYL 258
L +L L + YL NN + D VL L L TL L NQ+S ++P L L+ L LYL
Sbjct: 148 LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 203
Query: 259 YSNSLS 264
N +S
Sbjct: 204 SKNHIS 209
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 28/149 (18%)
Query: 202 LSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQL-------------------SGL 242
L N+ +LN N L D PL NLK+L L L +N++ +G+
Sbjct: 85 LPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI 142
Query: 243 IPFS-LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSL 301
+ L +L L LYL +N ++ +V+ L L L L +NQ+S +PL+ L+ L
Sbjct: 143 SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLA--GLTKL 198
Query: 302 TVMSLFSNSLSGFIPPILGNLKSLSALGL 330
+ L N +S L LK+L L L
Sbjct: 199 QNLYLSKNHISDL--RALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 199 LGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYL 258
L +L L + YL NN + D VL L L TL L NQ+S ++P L L+ L LYL
Sbjct: 148 LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 203
Query: 259 YSNSLS 264
N +S
Sbjct: 204 SKNHIS 209
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 28/149 (18%)
Query: 202 LSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQL-------------------SGL 242
L N+ +LN N L D PL NLK+L L L +N++ +G+
Sbjct: 85 LPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI 142
Query: 243 IPFS-LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSL 301
+ L +L L LYL +N ++ +V+ L L L L +NQ+S +PL+ L+ L
Sbjct: 143 SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLA--GLTKL 198
Query: 302 TVMSLFSNSLSGFIPPILGNLKSLSALGL 330
+ L N +S L LK+L L L
Sbjct: 199 QNLYLSKNHISDL--RALAGLKNLDVLEL 225
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 199 LGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYL 258
L +L L + YL NN + D VL L L TL L NQ+S ++P L L+ L LYL
Sbjct: 125 LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 180
Query: 259 YSNSLSG 265
N +S
Sbjct: 181 SKNHISD 187
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 28/149 (18%)
Query: 202 LSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQL-------------------SGL 242
L N+ +LN N L D PL NLK+L L L +N++ +G+
Sbjct: 62 LPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI 119
Query: 243 IPFS-LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSL 301
+ L +L L LYL +N ++ +V+ L L L L +NQ+S +PL+ L+ L
Sbjct: 120 SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLA--GLTKL 175
Query: 302 TVMSLFSNSLSGFIPPILGNLKSLSALGL 330
+ L N +S L LK+L L L
Sbjct: 176 QNLYLSKNHISDL--RALAGLKNLDVLEL 202
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 138/346 (39%), Gaps = 59/346 (17%)
Query: 213 NSLFDSIPL-VLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVI 271
NS +P +L + + + L+L+ Q+ + ++ + LY+ N++ P V
Sbjct: 60 NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119
Query: 272 GNLKSLLQLDLSENQLSGSIPLSL-GNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGL 330
N+ L L L N LS S+P + N LT +S+ +N+L SL L L
Sbjct: 120 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178
Query: 331 HINQLNGVIPASIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELDLCTNRLSG-AIPH 389
N+L V ++ + S+F ++ N LS AIP
Sbjct: 179 SSNRLTHV---------------------------DLSLIPSLFHANVSYNLLSTLAIPI 211
Query: 390 SISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLD 449
++ EL + N GP+ L ++ NNL+ + +P L +D
Sbjct: 212 AVE---ELDASHNSINVVRGPVN------VELTILKLQHNNLTDTAW--LLNYPGLVEVD 260
Query: 450 FSQNNFYGEISFNWRNFPKLCTFNASMN-----NIYGS-IPTEIGDLSKLQVLDLSSNHI 503
S N + + +L S N N+YG IPT L+VLDLS NH+
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-------LKVLDLSHNHL 313
Query: 504 VGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSAN 549
+ + + L L L+ N + + L+L + L+ + LS N
Sbjct: 314 L-HVERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHN 355
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 605 FQICNMKSLEKLNLCHNNL-SGFIPRCFEGMHNLSHIDISYNELQGPIPNSTVF 657
F I + +L+KLN+ HN + S +P F + NL H+D+SYN +Q N F
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 111/270 (41%), Gaps = 46/270 (17%)
Query: 112 LNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSI 171
++LSFN + N SELQ+LDL ++ + + L+ L +L N +
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 172 PPE------------------------IGQLNLINELALCHNNLHG-PIPPSLGNLSNLA 206
P IGQL + +L + HN +H +P NL+NL
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 207 NFYLNNNSL----FDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSL-----------GNLS 251
+ L+ N + + + + N + +LD+S N + + + GN +
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216
Query: 252 NLGILYLYSNSLSG-HIPSVI-GNLKSLLQLDLSE-NQLSGSIPLSLGNLSSLTVMSLFS 308
+ I+ +L+G H+ +I G K L++ E + + G +++ LT + FS
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF-RLTYTNDFS 275
Query: 309 NSLSGFIPPILGNLKSLSALGLHINQLNGV 338
+ + F L N+ ++S G+ I L V
Sbjct: 276 DDIVKF--HCLANVSAMSLAGVSIKYLEDV 303
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 605 FQICNMKSLEKLNLCHNNL-SGFIPRCFEGMHNLSHIDISYNELQGPIPNSTVF 657
F I + +L+KLN+ HN + S +P F + NL H+D+SYN +Q N F
Sbjct: 117 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 170
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 111/270 (41%), Gaps = 46/270 (17%)
Query: 112 LNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSI 171
++LSFN + N SELQ+LDL ++ + + L+ L +L N +
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 172 PPE------------------------IGQLNLINELALCHNNLHG-PIPPSLGNLSNLA 206
P IGQL + +L + HN +H +P NL+NL
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 207 NFYLNNNSL----FDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSL-----------GNLS 251
+ L+ N + + + + N + +LD+S N + + + GN +
Sbjct: 152 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 211
Query: 252 NLGILYLYSNSLSG-HIPSVI-GNLKSLLQLDLSE-NQLSGSIPLSLGNLSSLTVMSLFS 308
+ I+ +L+G H+ +I G K L++ E + + G +++ LT + FS
Sbjct: 212 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF-RLTYTNDFS 270
Query: 309 NSLSGFIPPILGNLKSLSALGLHINQLNGV 338
+ + F L N+ ++S G+ I L V
Sbjct: 271 DDIVKF--HCLANVSAMSLAGVSIKYLEDV 298
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 138/346 (39%), Gaps = 59/346 (17%)
Query: 213 NSLFDSIPL-VLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVI 271
NS +P +L + + + L+L+ Q+ + ++ + LY+ N++ P V
Sbjct: 54 NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113
Query: 272 GNLKSLLQLDLSENQLSGSIPLSL-GNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGL 330
N+ L L L N LS S+P + N LT +S+ +N+L SL L L
Sbjct: 114 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172
Query: 331 HINQLNGVIPASIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELDLCTNRLSG-AIPH 389
N+L V ++ + S+F ++ N LS AIP
Sbjct: 173 SSNRLTHV---------------------------DLSLIPSLFHANVSYNLLSTLAIPI 205
Query: 390 SISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLD 449
++ EL + N GP+ L ++ NNL+ + +P L +D
Sbjct: 206 AVE---ELDASHNSINVVRGPVN------VELTILKLQHNNLTDTAW--LLNYPGLVEVD 254
Query: 450 FSQNNFYGEISFNWRNFPKLCTFNASMN-----NIYGS-IPTEIGDLSKLQVLDLSSNHI 503
S N + + +L S N N+YG IPT L+VLDLS NH+
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-------LKVLDLSHNHL 307
Query: 504 VGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSAN 549
+ + + L L L+ N + + L+L + L+ + LS N
Sbjct: 308 L-HVERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHN 349
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 103/256 (40%), Gaps = 30/256 (11%)
Query: 87 INLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGV 146
+ S +GL ++ P L+L N + NL L L L +N+++ +
Sbjct: 36 VQCSDLGLEKVPKDLP----PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91
Query: 147 IPQEIGHLNQLRSLYFDVNQLHG---SIPPEIGQLNL-INELALCH----NNLHGPIPPS 198
P L +L LY NQL +P + +L + NE+ N L+ I
Sbjct: 92 SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 151
Query: 199 LG----NLSNLANFYLNNNSLFDSIPLVLGNLK--------SLSTLDLSKNQLSGLIPFS 246
LG S + N I + N+ SL+ L L N+++ + S
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS 211
Query: 247 LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSL 306
L L+NL L L NS+S + N L +L L+ N+L +P L + + V+ L
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270
Query: 307 FSNSLSG-----FIPP 317
+N++S F PP
Sbjct: 271 HNNNISAIGSNDFCPP 286
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 34/229 (14%)
Query: 443 PNLTFLDFSQNNFYGEI-SFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSN 501
P+ LD QNN EI +++N L T N I P L KL+ L LS N
Sbjct: 52 PDTALLDL-QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 502 HIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIAX 561
+ E+P ++ K +L +L ++ N+++ L ++ ++L N L+S ++ A
Sbjct: 111 QL-KELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 562 XXXXXXXXXXXXQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHN 621
++KL ++ D + + + +P SL +L+L N
Sbjct: 168 QG-------------------MKKLSYIRIADTNITTIPQGLP------PSLTELHLDGN 202
Query: 622 NLSGFIPRCFEGMHNLSHIDISYNELQ----GPIPNSTVFKDAHVEGNK 666
++ +G++NL+ + +S+N + G + N+ ++ H+ NK
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 32/209 (15%)
Query: 153 HLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNN 212
HL ++ + ++ +PP+ L+L N N + NL NL L N
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQN------NKITEIKDGDFKNLKNLHTLILIN 85
Query: 213 NSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIG 272
N + P L L L LSKNQL L P + L L ++ N ++ SV
Sbjct: 86 NKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKMP--KTLQELRVHENEITKVRKSVFN 142
Query: 273 NLKSLLQLDLSENQLSGS---------------IPLSLGNLS--------SLTVMSLFSN 309
L ++ ++L N L S I ++ N++ SLT + L N
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 202
Query: 310 SLSGFIPPILGNLKSLSALGLHINQLNGV 338
++ L L +L+ LGL N ++ V
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAV 231
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 14/225 (6%)
Query: 113 NLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIP 172
+L V +PP LDL +N++T + + +L L +L N++ P
Sbjct: 40 DLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93
Query: 173 PEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTL 232
L + L L N L +P + L ++ N + V L + +
Sbjct: 94 GAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVV 150
Query: 233 DLSKNQL--SGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGS 290
+L N L SG+ + + L + + +++ IP G SL +L L N+++
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ--GLPPSLTELHLDGNKITKV 207
Query: 291 IPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQL 335
SL L++L + L NS+S L N L L L+ N+L
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 103/256 (40%), Gaps = 30/256 (11%)
Query: 87 INLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGV 146
+ S +GL ++ P L+L N + NL L L L +N+++ +
Sbjct: 36 VQCSDLGLEKVPKDLP----PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91
Query: 147 IPQEIGHLNQLRSLYFDVNQLHG---SIPPEIGQLNL-INELALCH----NNLHGPIPPS 198
P L +L LY NQL +P + +L + NE+ N L+ I
Sbjct: 92 SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 151
Query: 199 LG----NLSNLANFYLNNNSLFDSIPLVLGNLK--------SLSTLDLSKNQLSGLIPFS 246
LG S + N I + N+ SL+ L L N+++ + S
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS 211
Query: 247 LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSL 306
L L+NL L L NS+S + N L +L L+ N+L +P L + + V+ L
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270
Query: 307 FSNSLSG-----FIPP 317
+N++S F PP
Sbjct: 271 HNNNISAIGSNDFCPP 286
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 34/229 (14%)
Query: 443 PNLTFLDFSQNNFYGEI-SFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSN 501
P+ LD QNN EI +++N L T N I P L KL+ L LS N
Sbjct: 52 PDTALLDL-QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 502 HIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIAX 561
+ E+P ++ K +L +L ++ N+++ L ++ ++L N L+S ++ A
Sbjct: 111 QL-KELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 562 XXXXXXXXXXXXQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHN 621
++KL ++ D + + + +P SL +L+L N
Sbjct: 168 QG-------------------MKKLSYIRIADTNITTIPQGLP------PSLTELHLDGN 202
Query: 622 NLSGFIPRCFEGMHNLSHIDISYNELQ----GPIPNSTVFKDAHVEGNK 666
++ +G++NL+ + +S+N + G + N+ ++ H+ NK
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 32/209 (15%)
Query: 153 HLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNN 212
HL ++ + ++ +PP+ L+L N N + NL NL L N
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQN------NKITEIKDGDFKNLKNLHTLILIN 85
Query: 213 NSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIG 272
N + P L L L LSKNQL L P + L L ++ N ++ SV
Sbjct: 86 NKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKMP--KTLQELRVHENEITKVRKSVFN 142
Query: 273 NLKSLLQLDLSENQLSGS---------------IPLSLGNLS--------SLTVMSLFSN 309
L ++ ++L N L S I ++ N++ SLT + L N
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 202
Query: 310 SLSGFIPPILGNLKSLSALGLHINQLNGV 338
++ L L +L+ LGL N ++ V
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAV 231
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 14/225 (6%)
Query: 113 NLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIP 172
+L V +PP LDL +N++T + + +L L +L N++ P
Sbjct: 40 DLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93
Query: 173 PEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTL 232
L + L L N L +P + L ++ N + V L + +
Sbjct: 94 GAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVV 150
Query: 233 DLSKNQL--SGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGS 290
+L N L SG+ + + L + + +++ IP G SL +L L N+++
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ--GLPPSLTELHLDGNKITKV 207
Query: 291 IPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQL 335
SL L++L + L NS+S L N L L L+ N+L
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 216 FDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLK 275
F SIP G ++ +LDLS N+++ + L +NL +L L S+ ++ +L
Sbjct: 43 FTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 100
Query: 276 SLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSN 309
SL LDLS+N LS G LSSL ++L N
Sbjct: 101 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 216 FDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLK 275
F SIP G ++ +LDLS N+++ + L +NL +L L S+ ++ +L
Sbjct: 17 FTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 74
Query: 276 SLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSN 309
SL LDLS+N LS G LSSL ++L N
Sbjct: 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 118/482 (24%), Positives = 178/482 (36%), Gaps = 78/482 (16%)
Query: 225 NLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSE 284
NLK+L+ LDLSKNQ+ LYL+ PS G L SL +D S
Sbjct: 121 NLKALTRLDLSKNQIRS--------------LYLH--------PS-FGKLNSLKSIDFSS 157
Query: 285 NQLSGSIPLSLGNL--SSLTVMSLFSNSLSGFIPPILGN-----------LKSLSALGLH 331
NQ+ L L +L+ SL +NSL + G + +S G
Sbjct: 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217
Query: 332 INQLNGVIPASIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELDLCTNRLSGAIPHSI 391
++ + G +I F I D N +G S+
Sbjct: 218 VD-ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK--------DPDQNTFAGLARSSV 268
Query: 392 SNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFS 451
+L ++ F + L L+ + N ++ EAF NL L+ S
Sbjct: 269 RHL------DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 452 QNNFYGEI-SFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSN-----HIVG 505
N GE+ S N+ PK+ + N+I L KLQ LDL N H +
Sbjct: 323 Y-NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP 381
Query: 506 EIP---VQLGKLFSLTKLILNSN--QLSG------GIPLELGSLTELQYIDLSANKLRSW 554
IP + KL +L K+ L +N LS I L + LQ + L+ N+ S
Sbjct: 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441
Query: 555 IPKSI-----AXXXXXXXXXXXXXQFSQKIPIEV-EKLIHLSELDLSYNFLDEEMPFQIC 608
+ + ++ +V E L HL L L++N+L+ P
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501
Query: 609 NMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTV-FKDAHVEGNKG 667
++ +L L+L N L+ NL +DIS N+L P P+ V + NK
Sbjct: 502 HLTALRGLSLNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPDVFVSLSVLDITHNKF 559
Query: 668 LC 669
+C
Sbjct: 560 IC 561
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 94/227 (41%), Gaps = 29/227 (12%)
Query: 87 INLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGV 146
+NL+ +N E AF +L LNLS+N++ L ++ Y+DL N + +
Sbjct: 295 LNLAYNKINKIADE-AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 147 IPQEIGHLNQLRSLYFDVNQLHG-----SIPP---------EIGQLNLI-NELALCHNNL 191
Q L +L++L N L SIP + ++NL N + L N L
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413
Query: 192 HG-PIPPSLGNLSNLANFYLNNNSLF----DSIPLVLGNLKSLSTLDLSKNQL-----SG 241
I L + +L LN N D P SL L L +N L +
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP---SENPSLEQLFLGENMLQLAWETE 470
Query: 242 LIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLS 288
L LS+L +LYL N L+ P V +L +L L L+ N+L+
Sbjct: 471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 118/487 (24%), Positives = 185/487 (37%), Gaps = 77/487 (15%)
Query: 102 AFSSFPHLVRLNLSFNIVFGTIPPQ--VGNLSELQYLDLGSNQLTGV-IPQEIGHLNQLR 158
AF HL L L F + + NL L LDL NQ+ + + G LN L+
Sbjct: 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151
Query: 159 SLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDS 218
S+ F NQ+ +C + L P G L+ F L NSL+
Sbjct: 152 SIDFSSNQI----------------FLVCEHELE----PLQG--KTLSFFSLAANSLYSR 189
Query: 219 IPLVLGNLKS------LSTLDLSKNQLSGLIPFSLGNLSN-LGILYLYSNSLSGHIPSV- 270
+ + G + L LD+S N + I GN SN + +S L+ HI
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT---GNFSNAISKSQAFSLILAHHIMGAG 246
Query: 271 --IGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSAL 328
N+K D +N +G L+ ++ L + F SL+ + LK L L
Sbjct: 247 FGFHNIK-----DPDQNTFAG---LARSSVRHLDLSHGFVFSLNS---RVFETLKDLKVL 295
Query: 329 GLHINQLNGVIPASIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELDLCTNRLSGAIP 388
L N++N + + L + +DL N ++
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355
Query: 389 HSISNLTELVLVNICEN-----HFFGPIPK---SLRNLTSLERVRFNQN--NLSGKVYEA 438
+ L +L +++ +N HF IP S L +L ++ N +LS E
Sbjct: 356 QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN 415
Query: 439 FG------YHPNLTFLDFSQNNFY---GEISFNWRNFPKLCTFNASMNNIYGSIPTEI-- 487
P+L L +QN F G+ + + P L N + + TE+
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN--PSLEQLFLGENMLQLAWETELCW 473
Query: 488 ---GDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYI 544
LS LQVL L+ N++ P L +L L LNSN+L+ +L + L+ +
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEIL 531
Query: 545 DLSANKL 551
D+S N+L
Sbjct: 532 DISRNQL 538
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 255 ILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSL-GNLSSLTVMSLFSNSLSG 313
+L+LY N ++ P V +L L L+L+ NQL+ ++P+ + L+ LT ++L N L
Sbjct: 44 VLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLT-ALPVGVFDKLTKLTHLALHINQLKS 102
Query: 314 FIPPILGNLKSLSALGL 330
+ NLKSL+ + L
Sbjct: 103 IPMGVFDNLKSLTHIYL 119
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 232 LDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSI 291
L L NQ++ L P +L+ L L L N L+ V L L L L NQL SI
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK-SI 103
Query: 292 PLSL-GNLSSLTVMSLFSN 309
P+ + NL SLT + LF+N
Sbjct: 104 PMGVFDNLKSLTHIYLFNN 122
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 187 CHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFS 246
C +P + + + + Y+N + + P V +L L+ L+L+ NQL+ L
Sbjct: 26 CQERSLASVPAGIPTTTQVLHLYINQITKLE--PGVFDSLTQLTYLNLAVNQLTALPVGV 83
Query: 247 LGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSEN 285
L+ L L L+ N L V NLKSL + L N
Sbjct: 84 FDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 267 IPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLS 326
+P+ I +L L + NQ++ P +L+ LT ++L N L+ + L L+
Sbjct: 34 VPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLT 91
Query: 327 ALGLHINQLNGV 338
L LHINQL +
Sbjct: 92 HLALHINQLKSI 103
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 90 SSMGLNGTLQEFAFSSFPHLVR-----LNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLT 144
S G QE + +S P + L+L N + P +L++L YL+L NQLT
Sbjct: 18 SCSGTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLT 77
Query: 145 GVIPQEIGHLNQLRSLYFDVNQLHGSIP 172
+ L +L L +NQL SIP
Sbjct: 78 ALPVGVFDKLTKLTHLALHINQLK-SIP 104
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 93/232 (40%), Gaps = 35/232 (15%)
Query: 134 QYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLI---NELALCHNN 190
+ L+L NQ+ + HL L L N + EIG N + N L L N
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI---EIGAFNGLANLNTLELFDNR 123
Query: 191 LHGPIPPSLGNLSNLANFYLNNNSLFDSIP-LVLGNLKSLSTLDLSK-NQLSGLIPFSLG 248
L + LS L +L NN + +SIP + SL LDL + +LS + +
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182
Query: 249 NLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSL------------- 295
LSNL L L +L IP++ +K L +LDLS N LS P S
Sbjct: 183 GLSNLRYLNLAMCNLR-EIPNLTPLIK-LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240
Query: 296 -----------GNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLN 336
NL SL ++L N+L+ + L L + LH N N
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 110/276 (39%), Gaps = 35/276 (12%)
Query: 374 FELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSG 433
F +C + +P IS T L+N+ EN S ++L LE ++ ++N++
Sbjct: 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT 102
Query: 434 KVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPT-EIGDLSK 492
AF NL L+ N +IP LSK
Sbjct: 103 IEIGAFNGLANLNTLELFDNRL-------------------------TTIPNGAFVYLSK 137
Query: 493 LQVLDLSSNHIVGEIPVQLGKLFSLTKLILNS-NQLSGGIPLELGSLTELQYIDLSANKL 551
L+ L L +N I ++ SL +L L +LS L+ L+Y++L+ L
Sbjct: 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197
Query: 552 RSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVEKLIHLSELDLSYNFLD--EEMPFQICN 609
R IP ++ S P + L+HL +L + + + E F N
Sbjct: 198 RE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD--N 253
Query: 610 MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
++SL ++NL HNNL+ F +H+L I + +N
Sbjct: 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 98 LQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQL 157
+ E AF +L LNL+ + P + L +L LDL N L+ + P L L
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233
Query: 158 RSLYFDVNQLHGSIPPEIGQLNLINELALCHNNL 191
+ L+ +Q+ L + E+ L HNNL
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 95/240 (39%), Gaps = 34/240 (14%)
Query: 125 PQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLN---LI 181
PQ G S +YL+L N + + HL+ L L N + E+G N +
Sbjct: 70 PQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI---EVGAFNGLASL 125
Query: 182 NELALCHNNLHGPIPPSLGNLSNLANFYLNNNSL-------FDSIP----LVLGNLKSLS 230
N L L N L + LS L +L NN + F+ +P L LG LK L
Sbjct: 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185
Query: 231 TLDLSKNQLSGLIPFSLGNLSNLGI---------LYLYSNSLSG-HIPSV----IGNLKS 276
+ S+ GL NL I + L +SG H P + L S
Sbjct: 186 YI--SEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243
Query: 277 LLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLN 336
L +L + +Q+S + L+SL ++L N+LS + L+ L L LH N N
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 19/146 (13%)
Query: 140 SNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSL 199
SNQ + V+ G ++++ IP LNL+ NN+ +
Sbjct: 53 SNQFSKVVCTRRG-----------LSEVPQGIPSNTRYLNLME------NNIQMIQADTF 95
Query: 200 GNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLY 259
+L +L L NS+ L SL+TL+L N L+ + + LS L L+L
Sbjct: 96 RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155
Query: 260 SNSLSGHIPSVIGN-LKSLLQLDLSE 284
+N + IPS N + SL++LDL E
Sbjct: 156 NNPIES-IPSYAFNRVPSLMRLDLGE 180
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 132 ELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNL 191
+L YL + +LTG IP+++ L L+ D N++ ++ + + + L L HN +
Sbjct: 173 KLNYLRISEAKLTG-IPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 192 HGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLS 240
SL L L +L+NN L +P L +LK L + L N ++
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNIT 277
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 89/230 (38%), Gaps = 41/230 (17%)
Query: 443 PNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNH 502
P+ T LD N+ +++ L N I L KLQ L +S NH
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 503 IVGEIPVQLGKLFSLTKLILNSNQLS------------------GGIPLELGSLT----- 539
+V EIP L SL +L ++ N++ GG PLE
Sbjct: 114 LV-EIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 540 --ELQYIDLSANKLRSWIPKSIAXXXXXXXXXXXXXQFSQKIPIEVEKLIHLSE---LDL 594
+L Y+ +S KL + IPK + Q IE+E L+ S+ L L
Sbjct: 171 GLKLNYLRISEAKL-TGIPKDLPETLNELHLDHNKIQ-----AIELEDLLRYSKLYRLGL 224
Query: 595 SYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISY 644
+N + + + +L +L+L +N LS R G+ +L + + Y
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS----RVPAGLPDLKLLQVVY 270
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 100/232 (43%), Gaps = 54/232 (23%)
Query: 73 WVGISCNQAERVISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSE 132
++G+S NQ E+ L E SSF ++ ++ + +PP
Sbjct: 135 YLGVSNNQLEK--------------LPELQNSSFLKIIDVDNNSLKKLPDLPPS------ 174
Query: 133 LQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLH 192
L+++ G+NQL + E+ +L L ++Y D N L + L L E + NN+
Sbjct: 175 LEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKK-----LPDLPLSLESIVAGNNIL 227
Query: 193 GPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNL-----------------KSLSTLDLS 235
+P L NL L Y +NN L ++P + +L +SL+ LD+S
Sbjct: 228 EELP-ELQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVS 285
Query: 236 KNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQL 287
+N SGL S L Y N+ S I S+ SL +L++S N+L
Sbjct: 286 ENIFSGL--------SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL 329
>pdb|2ATC|B Chain B, Crystal And Molecular Structures Of Native And
Ctp-Liganded Aspartate Carbamoyltransferase From
Escherichia Coli
Length = 152
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 492 KLQVLDLSSNHIVGEIPVQLG-KLFSLTKLILNSNQLSGGIPLELGSL 538
KLQV ++ ++ IP ++G KL SL KL ++++ G+ L G +
Sbjct: 6 KLQVAEIKRGTVINHIPAEIGFKLLSLFKLTETQDRITIGLNLPSGEM 53
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 27/222 (12%)
Query: 442 HPNLTFLDFSQNNFYG-EISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLS----KLQVL 496
+P LT+L+ ++N ++S N + C N + + + T++ L K+ L
Sbjct: 126 NPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL 185
Query: 497 DLSSNHIVGEI--------PVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSA 548
D+S N ++ + + L + LT L +SN+L+ +++ LT+L Y D S
Sbjct: 186 DVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT---EIDVTPLTQLTYFDCSV 242
Query: 549 NKLRSWIPKSIAXXXXXXXXXXXXXQF-----SQKIPIEVEKLIHLSELDLSYNFLDEEM 603
N L +++ + +Q I + E + ELD+++N ++
Sbjct: 243 NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHN---TQL 299
Query: 604 PFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
C + +L+L N ++ + L+ +D+S+N
Sbjct: 300 YLLDCQAAGITELDLSQNPKLVYL---YLNNTELTELDVSHN 338
>pdb|2QG9|B Chain B, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
pdb|2QG9|D Chain D, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
Length = 153
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 491 SKLQVLDLSSNHIVGEIPVQLG-KLFSLTKLILNSNQLSGGIPLELGSL 538
+KLQV + ++ IP Q+G KL SL KL +++ G+ L G +
Sbjct: 5 NKLQVEAIKRGTVIAHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEM 53
>pdb|1NBE|B Chain B, Aspartate Transcarbamoylase Regulatory Chain Mutant (T82a)
pdb|1NBE|D Chain D, Aspartate Transcarbamoylase Regulatory Chain Mutant (T82a)
Length = 153
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 491 SKLQVLDLSSNHIVGEIPVQLG-KLFSLTKLILNSNQLSGGIPLELGSL 538
+KLQV + ++ IP Q+G KL SL KL +++ G+ L G +
Sbjct: 5 NKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEM 53
>pdb|1D09|B Chain B, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl-L- Aspartate (Pala)
pdb|1D09|D Chain D, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl-L- Aspartate (Pala)
pdb|1EZZ|B Chain B, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1EZZ|D Chain D, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1F1B|B Chain B, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-state In The Presence Of
N-phosphonacetyl-l-aspartate
pdb|1F1B|D Chain D, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-state In The Presence Of
N-phosphonacetyl-l-aspartate
pdb|1I5O|B Chain B, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
pdb|1I5O|D Chain D, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
pdb|1SKU|B Chain B, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
pdb|1SKU|D Chain D, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
pdb|1Q95|G Chain G, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|H Chain H, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|I Chain I, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|J Chain J, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|K Chain K, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|L Chain L, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|G Chain G, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|H Chain H, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|I Chain I, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|J Chain J, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|K Chain K, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|L Chain L, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0C|B Chain B, Products In The T State Of Aspartate Transcarbamylase:
Crystal Structure Of The Phosphate And
N-Carbamyl-L-Aspartate Ligated Enzyme
pdb|1R0C|H Chain H, Products In The T State Of Aspartate Transcarbamylase:
Crystal Structure Of The Phosphate And
N-Carbamyl-L-Aspartate Ligated Enzyme
pdb|1TTH|B Chain B, Aspartate Transcarbamoylase Catalytic Chain Mutant
Glu50ala Complexed With N-(Phosphonacetyl-L-Aspartate)
(Pala)
pdb|1TTH|D Chain D, Aspartate Transcarbamoylase Catalytic Chain Mutant
Glu50ala Complexed With N-(Phosphonacetyl-L-Aspartate)
(Pala)
pdb|1TU0|B Chain B, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide
pdb|1TU0|D Chain D, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide
pdb|1TUG|B Chain B, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide, Malonate, And
Cytidine-5- Prime-Triphosphate (Ctp)
pdb|1TUG|D Chain D, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide, Malonate, And
Cytidine-5- Prime-Triphosphate (Ctp)
pdb|1XJW|B Chain B, The Structure Of E. Coli Aspartate Transcarbamoylase Q137a
Mutant In The R-State
pdb|1XJW|D Chain D, The Structure Of E. Coli Aspartate Transcarbamoylase Q137a
Mutant In The R-State
pdb|1ZA1|B Chain B, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp At 2.20 A Resolution
pdb|1ZA1|D Chain D, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp At 2.20 A Resolution
pdb|1ZA2|B Chain B, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp, Carbamoyl Phosphate At 2.50 A
Resolution
pdb|1ZA2|D Chain D, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp, Carbamoyl Phosphate At 2.50 A
Resolution
pdb|2A0F|B Chain B, Structure Of D236a Mutant E. Coli Aspartate
Transcarbamoylase In Presence Of Phosphonoacetamide At
2.90 A Resolution
pdb|2A0F|D Chain D, Structure Of D236a Mutant E. Coli Aspartate
Transcarbamoylase In Presence Of Phosphonoacetamide At
2.90 A Resolution
pdb|2AIR|B Chain B, T-State Active Site Of Aspartate Transcarbamylase:crystal
Structure Of The Carbamyl Phosphate And L-Alanosine
Ligated Enzyme
pdb|2AIR|H Chain H, T-State Active Site Of Aspartate Transcarbamylase:crystal
Structure Of The Carbamyl Phosphate And L-Alanosine
Ligated Enzyme
pdb|2FZC|B Chain B, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.10 Resolution
pdb|2FZC|D Chain D, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.10 Resolution
pdb|2FZG|B Chain B, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.25 Resolution
pdb|2FZG|D Chain D, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.25 Resolution
pdb|2FZK|B Chain B, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.50 Resolution
pdb|2FZK|D Chain D, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.50 Resolution
pdb|2H3E|B Chain B, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of N-Phosphonacetyl-L-Isoasparagine At
2.3a Resolution
pdb|2H3E|D Chain D, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of N-Phosphonacetyl-L-Isoasparagine At
2.3a Resolution
pdb|2HSE|B Chain B, Structure Of D236a E. Coli Aspartate Transcarbamoylase In
The Presence Of Phosphonoacetamide And L-Aspartate At
2.60 A Resolution
pdb|2HSE|D Chain D, Structure Of D236a E. Coli Aspartate Transcarbamoylase In
The Presence Of Phosphonoacetamide And L-Aspartate At
2.60 A Resolution
pdb|1RAA|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAA|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAB|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAB|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAC|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAC|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAD|B Chain B, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAD|D Chain D, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAE|B Chain B, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAE|D Chain D, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAF|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAF|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAG|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAG|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAH|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAH|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAI|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAI|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|2IPO|B Chain B, E. Coli Aspartate Transcarbamoylase Complexed With N-
Phosphonacetyl-l-asparagine
pdb|2IPO|D Chain D, E. Coli Aspartate Transcarbamoylase Complexed With N-
Phosphonacetyl-l-asparagine
pdb|3D7S|B Chain B, Crystal Structure Of Wild-Type E. Coli Asparate
Transcarbamoylase At Ph 8.5 At 2.80 A Resolution
pdb|3D7S|D Chain D, Crystal Structure Of Wild-Type E. Coli Asparate
Transcarbamoylase At Ph 8.5 At 2.80 A Resolution
pdb|3MPU|B Chain B, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|D Chain D, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|F Chain F, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|4E2F|D Chain D, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|B Chain B, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|J Chain J, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|L Chain L, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|H Chain H, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|F Chain F, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4F04|B Chain B, A Second Allosteric Site In E. Coli Aspartate
Transcarbamoylase: R- State Atcase With Utp Bound
pdb|4F04|D Chain D, A Second Allosteric Site In E. Coli Aspartate
Transcarbamoylase: R- State Atcase With Utp Bound
pdb|4FYV|B Chain B, Aspartate Transcarbamoylase Complexed With Dctp
pdb|4FYV|D Chain D, Aspartate Transcarbamoylase Complexed With Dctp
pdb|4FYW|B Chain B, E. Coli Aspartate Transcarbamoylase Complexed With Ctp
pdb|4FYW|D Chain D, E. Coli Aspartate Transcarbamoylase Complexed With Ctp
pdb|4FYX|B Chain B, E. Coli Aspartate Transcarbamoylase Complexed With Dctp,
Utp, And Mg2+
pdb|4FYX|D Chain D, E. Coli Aspartate Transcarbamoylase Complexed With Dctp,
Utp, And Mg2+
pdb|4FYY|B Chain B, E. Coli Aspartate Transcarbamoylase Complexed With Ctp,
Utp, And Mg2+
pdb|4FYY|D Chain D, E. Coli Aspartate Transcarbamoylase Complexed With Ctp,
Utp, And Mg2+
Length = 153
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 491 SKLQVLDLSSNHIVGEIPVQLG-KLFSLTKLILNSNQLSGGIPLELGSL 538
+KLQV + ++ IP Q+G KL SL KL +++ G+ L G +
Sbjct: 5 NKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEM 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,649,134
Number of Sequences: 62578
Number of extensions: 738055
Number of successful extensions: 3036
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1533
Number of HSP's gapped (non-prelim): 727
length of query: 725
length of database: 14,973,337
effective HSP length: 106
effective length of query: 619
effective length of database: 8,340,069
effective search space: 5162502711
effective search space used: 5162502711
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)