Query 045649
Match_columns 725
No_of_seqs 769 out of 4565
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 04:04:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.5E-78 5.4E-83 723.7 48.5 582 24-672 26-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.6E-62 1.2E-66 582.8 37.6 512 131-669 69-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 3.7E-43 8.1E-48 341.0 -13.3 486 132-648 46-541 (565)
4 KOG4194 Membrane glycoprotein 100.0 1.1E-39 2.3E-44 330.7 4.5 399 229-653 54-457 (873)
5 KOG4194 Membrane glycoprotein 100.0 2.5E-38 5.4E-43 320.8 7.6 353 300-653 79-434 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 2.2E-42 4.7E-47 335.7 -22.2 489 84-624 47-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 6E-38 1.3E-42 334.8 -6.0 493 103-645 17-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 3E-37 6.6E-42 329.4 -7.4 487 83-621 22-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 3E-34 6.5E-39 292.9 -5.5 365 105-478 5-373 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 8.1E-34 1.8E-38 289.7 -4.3 366 250-647 6-374 (1255)
11 PLN03210 Resistant to P. syrin 99.9 2E-23 4.3E-28 250.4 27.8 358 81-453 531-903 (1153)
12 PLN03210 Resistant to P. syrin 99.9 3.5E-23 7.6E-28 248.3 27.6 346 125-502 552-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 1.6E-25 3.4E-30 218.5 -3.0 397 228-645 68-498 (498)
14 KOG4237 Extracellular matrix p 99.9 1.6E-24 3.4E-29 211.5 -3.5 419 185-621 52-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 1.8E-20 4E-25 208.4 15.8 264 300-631 202-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 3.7E-20 8.1E-25 206.0 17.1 222 395-653 242-463 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2E-19 4.2E-24 201.8 18.0 246 132-408 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.1E-18 2.3E-23 195.9 14.1 246 348-624 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 3.1E-20 6.7E-25 194.2 0.0 276 351-647 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 7.9E-20 1.7E-24 191.1 1.5 277 327-623 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 3E-19 6.4E-24 155.0 -5.4 164 102-271 28-192 (264)
22 KOG0617 Ras suppressor protein 99.7 1.6E-18 3.5E-23 150.5 -5.8 156 128-288 30-186 (264)
23 PLN03150 hypothetical protein; 99.6 2.2E-15 4.7E-20 169.0 13.4 114 565-679 420-538 (623)
24 PLN03150 hypothetical protein; 99.6 1.4E-14 3E-19 162.5 13.7 152 23-189 368-525 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 8.5E-13 1.8E-17 135.9 -3.7 191 445-645 77-270 (722)
26 COG4886 Leucine-rich repeat (L 99.2 3.9E-11 8.4E-16 129.1 7.7 154 492-652 141-294 (394)
27 COG4886 Leucine-rich repeat (L 99.1 6.2E-11 1.3E-15 127.5 7.9 195 111-314 97-292 (394)
28 KOG0532 Leucine-rich repeat (L 99.1 1E-12 2.3E-17 135.3 -5.6 170 134-312 78-247 (722)
29 KOG1909 Ran GTPase-activating 99.1 2.2E-12 4.9E-17 125.6 -4.8 240 103-359 26-310 (382)
30 PF14580 LRR_9: Leucine-rich r 99.1 6.7E-11 1.4E-15 108.6 4.7 124 513-642 17-147 (175)
31 KOG1259 Nischarin, modulator o 99.1 2.8E-11 6.1E-16 115.1 1.3 131 515-651 284-415 (490)
32 KOG1259 Nischarin, modulator o 99.0 6.1E-11 1.3E-15 112.8 1.3 133 223-361 280-413 (490)
33 PF14580 LRR_9: Leucine-rich r 99.0 5.1E-10 1.1E-14 102.8 6.3 128 488-619 16-148 (175)
34 KOG1909 Ran GTPase-activating 99.0 6.6E-11 1.4E-15 115.5 0.3 90 558-647 208-310 (382)
35 KOG4658 Apoptotic ATPase [Sign 99.0 4.3E-10 9.3E-15 129.1 6.0 276 103-385 519-808 (889)
36 KOG3207 Beta-tubulin folding c 99.0 8.2E-11 1.8E-15 117.9 -0.2 136 490-625 196-340 (505)
37 KOG4658 Apoptotic ATPase [Sign 99.0 6E-10 1.3E-14 127.9 5.7 274 128-408 520-807 (889)
38 KOG3207 Beta-tubulin folding c 98.9 1.5E-10 3.2E-15 116.2 -0.3 211 104-314 118-341 (505)
39 PF08263 LRRNT_2: Leucine rich 98.8 3.8E-09 8.2E-14 72.7 4.3 41 26-79 2-43 (43)
40 PF13855 LRR_8: Leucine rich r 98.8 1.9E-09 4.1E-14 81.3 2.4 60 588-647 2-61 (61)
41 KOG0531 Protein phosphatase 1, 98.8 5.9E-10 1.3E-14 120.1 -1.3 224 151-387 91-321 (414)
42 PF13855 LRR_8: Leucine rich r 98.8 3.4E-09 7.3E-14 79.9 2.3 59 564-622 2-60 (61)
43 KOG0531 Protein phosphatase 1, 98.7 1.5E-09 3.3E-14 116.8 -0.3 129 153-288 70-199 (414)
44 KOG1859 Leucine-rich repeat pr 98.5 5.8E-09 1.3E-13 110.9 -2.9 156 484-649 102-268 (1096)
45 KOG1859 Leucine-rich repeat pr 98.4 4.2E-09 9.1E-14 111.9 -6.9 181 460-649 102-293 (1096)
46 KOG4579 Leucine-rich repeat (L 98.3 3E-08 6.4E-13 83.9 -2.8 135 516-654 28-165 (177)
47 COG5238 RNA1 Ran GTPase-activa 98.2 1.1E-07 2.5E-12 89.8 -2.3 218 103-337 26-286 (388)
48 KOG2120 SCF ubiquitin ligase, 98.2 8E-09 1.7E-13 98.7 -10.3 84 132-215 186-272 (419)
49 KOG4579 Leucine-rich repeat (L 98.2 1.5E-07 3.3E-12 79.7 -2.1 138 493-633 29-168 (177)
50 KOG2982 Uncharacterized conser 98.1 7.4E-07 1.6E-11 85.5 -0.3 61 346-406 70-132 (418)
51 KOG2120 SCF ubiquitin ligase, 98.1 3.7E-08 8E-13 94.3 -9.2 201 83-286 160-374 (419)
52 KOG2982 Uncharacterized conser 98.0 2.8E-06 6.1E-11 81.6 2.2 232 295-547 41-287 (418)
53 COG5238 RNA1 Ran GTPase-activa 97.8 8E-06 1.7E-10 77.6 1.0 221 82-314 30-287 (388)
54 PF12799 LRR_4: Leucine Rich r 97.7 2.6E-05 5.6E-10 53.7 3.0 17 607-623 20-36 (44)
55 PRK15386 type III secretion pr 97.7 6.3E-05 1.4E-09 78.0 7.3 136 463-622 48-188 (426)
56 PRK15386 type III secretion pr 97.7 0.0002 4.4E-09 74.3 9.4 56 104-165 49-104 (426)
57 PF12799 LRR_4: Leucine Rich r 97.6 5.8E-05 1.2E-09 51.9 3.3 36 564-600 2-37 (44)
58 KOG3665 ZYG-1-like serine/thre 97.5 3E-05 6.5E-10 87.4 1.6 149 131-281 122-281 (699)
59 KOG1644 U2-associated snRNP A' 97.5 0.00013 2.9E-09 66.6 5.4 103 541-645 44-150 (233)
60 PF13306 LRR_5: Leucine rich r 97.5 0.00018 3.8E-09 63.7 5.7 58 487-546 8-65 (129)
61 PF13306 LRR_5: Leucine rich r 97.4 0.00034 7.3E-09 61.9 6.5 122 510-637 7-128 (129)
62 KOG3665 ZYG-1-like serine/thre 97.4 4.4E-05 9.6E-10 86.1 0.9 134 155-290 122-265 (699)
63 KOG1644 U2-associated snRNP A' 97.4 0.00029 6.4E-09 64.4 5.6 36 225-260 111-149 (233)
64 KOG2739 Leucine-rich acidic nu 96.9 0.00047 1E-08 66.0 2.3 108 507-618 35-150 (260)
65 KOG2739 Leucine-rich acidic nu 96.9 0.00075 1.6E-08 64.6 3.1 89 463-553 39-130 (260)
66 KOG4341 F-box protein containi 96.5 0.00019 4.2E-09 72.7 -3.5 35 276-310 139-175 (483)
67 KOG2123 Uncharacterized conser 96.4 0.00026 5.6E-09 67.8 -3.4 100 514-617 18-123 (388)
68 KOG4341 F-box protein containi 96.3 0.00019 4.1E-09 72.8 -4.9 88 537-624 344-439 (483)
69 KOG2123 Uncharacterized conser 96.1 0.00034 7.4E-09 67.0 -4.2 100 538-641 18-123 (388)
70 KOG1947 Leucine rich repeat pr 95.9 0.00052 1.1E-08 76.1 -4.9 16 319-334 358-373 (482)
71 KOG1947 Leucine rich repeat pr 95.8 0.00094 2E-08 74.0 -3.3 100 466-575 268-374 (482)
72 PF00560 LRR_1: Leucine Rich R 95.1 0.0072 1.6E-07 34.4 0.3 18 613-631 2-19 (22)
73 PF00560 LRR_1: Leucine Rich R 94.6 0.0098 2.1E-07 33.9 0.1 12 589-600 2-13 (22)
74 KOG4308 LRR-containing protein 93.8 0.00059 1.3E-08 73.8 -11.2 181 444-624 88-303 (478)
75 KOG4308 LRR-containing protein 93.2 0.00088 1.9E-08 72.4 -11.1 204 420-623 88-330 (478)
76 PF01102 Glycophorin_A: Glycop 91.2 0.064 1.4E-06 45.6 0.1 30 693-722 65-94 (122)
77 PF04478 Mid2: Mid2 like cell 91.0 0.14 3.1E-06 44.8 2.0 31 691-721 48-78 (154)
78 PF15102 TMEM154: TMEM154 prot 89.7 0.43 9.3E-06 41.6 3.9 17 706-722 72-88 (146)
79 PF13504 LRR_7: Leucine rich r 88.4 0.24 5.3E-06 26.1 0.9 10 589-598 3-12 (17)
80 smart00369 LRR_TYP Leucine-ric 88.2 0.42 9.1E-06 28.3 2.0 13 612-624 3-15 (26)
81 smart00370 LRR Leucine-rich re 88.2 0.42 9.1E-06 28.3 2.0 13 612-624 3-15 (26)
82 smart00369 LRR_TYP Leucine-ric 88.1 0.41 8.9E-06 28.4 1.9 19 586-604 1-19 (26)
83 smart00370 LRR Leucine-rich re 88.1 0.41 8.9E-06 28.4 1.9 19 586-604 1-19 (26)
84 KOG0473 Leucine-rich repeat pr 87.9 0.016 3.5E-07 54.4 -6.3 88 534-624 37-124 (326)
85 PF01299 Lamp: Lysosome-associ 87.9 0.53 1.2E-05 48.3 3.9 32 692-723 270-301 (306)
86 PTZ00382 Variant-specific surf 86.8 0.53 1.2E-05 38.6 2.5 33 689-721 63-95 (96)
87 PF06365 CD34_antigen: CD34/Po 85.5 1.1 2.4E-05 41.9 4.2 32 693-724 101-132 (202)
88 KOG0473 Leucine-rich repeat pr 84.5 0.046 9.9E-07 51.5 -5.3 89 510-601 37-125 (326)
89 KOG3864 Uncharacterized conser 83.6 0.28 6.1E-06 45.5 -0.6 81 492-572 102-185 (221)
90 PF13516 LRR_6: Leucine Rich r 83.0 0.61 1.3E-05 27.0 0.9 15 539-553 2-16 (24)
91 KOG3864 Uncharacterized conser 81.0 0.23 5E-06 46.1 -2.1 34 491-524 151-185 (221)
92 PF06024 DUF912: Nucleopolyhed 79.4 2.1 4.6E-05 35.5 3.3 31 691-721 60-91 (101)
93 PF01034 Syndecan: Syndecan do 77.4 0.76 1.7E-05 33.7 0.1 26 695-720 12-37 (64)
94 PF05568 ASFV_J13L: African sw 77.4 1.3 2.9E-05 37.9 1.5 20 704-723 40-59 (189)
95 PF05454 DAG1: Dystroglycan (D 72.9 1.1 2.5E-05 44.6 0.0 14 708-721 161-174 (290)
96 PF00558 Vpu: Vpu protein; In 70.7 4 8.7E-05 31.8 2.5 8 716-723 30-37 (81)
97 smart00365 LRR_SD22 Leucine-ri 68.1 4.6 0.0001 24.0 1.8 12 588-599 3-14 (26)
98 PF02009 Rifin_STEVOR: Rifin/s 67.2 2.3 4.9E-05 42.9 0.7 28 697-724 259-286 (299)
99 TIGR01478 STEVOR variant surfa 61.3 4.2 9E-05 39.8 1.3 8 713-720 280-287 (295)
100 PF08374 Protocadherin: Protoc 61.1 5.3 0.00011 37.4 1.8 20 690-709 36-55 (221)
101 PTZ00370 STEVOR; Provisional 60.3 4.4 9.6E-05 39.8 1.2 8 713-720 276-283 (296)
102 smart00364 LRR_BAC Leucine-ric 60.2 6.4 0.00014 23.4 1.4 13 612-624 3-15 (26)
103 smart00368 LRR_RI Leucine rich 56.7 9.2 0.0002 23.1 1.8 14 611-624 2-15 (28)
104 TIGR00864 PCC polycystin catio 56.1 5.6 0.00012 51.4 1.5 38 617-654 1-38 (2740)
105 PF12877 DUF3827: Domain of un 55.6 13 0.00028 40.9 3.9 32 687-719 265-296 (684)
106 TIGR01477 RIFIN variant surfac 53.6 7.2 0.00016 39.9 1.5 27 698-724 314-340 (353)
107 PTZ00046 rifin; Provisional 53.4 7.3 0.00016 40.0 1.5 27 698-724 319-345 (358)
108 PF14914 LRRC37AB_C: LRRC37A/B 51.0 9.9 0.00021 33.2 1.7 33 688-720 116-148 (154)
109 PF06667 PspB: Phage shock pro 49.3 10 0.00022 29.3 1.4 25 698-722 8-32 (75)
110 PF03302 VSP: Giardia variant- 48.0 14 0.00029 39.5 2.6 36 686-721 361-396 (397)
111 PF04971 Lysis_S: Lysis protei 47.7 11 0.00025 28.1 1.4 35 688-722 29-63 (68)
112 PTZ00208 65 kDa invariant surf 46.5 11 0.00023 39.0 1.4 32 691-722 385-416 (436)
113 PF07204 Orthoreo_P10: Orthore 44.5 8.1 0.00018 30.7 0.2 15 706-720 55-69 (98)
114 PF15099 PIRT: Phosphoinositid 44.4 11 0.00024 31.9 1.1 31 693-723 81-111 (129)
115 PF14610 DUF4448: Protein of u 44.3 17 0.00038 34.2 2.5 20 691-710 156-175 (189)
116 PF05545 FixQ: Cbb3-type cytoc 43.3 20 0.00043 25.1 2.0 8 712-719 26-33 (49)
117 PF06809 NPDC1: Neural prolife 43.2 33 0.00071 34.4 4.1 30 693-722 199-228 (341)
118 KOG4242 Predicted myosin-I-bin 42.9 80 0.0017 33.9 7.0 273 370-646 164-479 (553)
119 PF15102 TMEM154: TMEM154 prot 42.9 18 0.00038 31.9 2.0 31 694-725 58-88 (146)
120 PRK09458 pspB phage shock prot 42.5 23 0.0005 27.2 2.4 26 698-723 8-33 (75)
121 PF07213 DAP10: DAP10 membrane 40.4 30 0.00065 26.8 2.7 13 703-715 45-57 (79)
122 PF04689 S1FA: DNA binding pro 40.3 35 0.00075 25.0 2.8 32 687-718 8-39 (69)
123 TIGR02976 phageshock_pspB phag 35.8 23 0.00049 27.5 1.5 21 701-721 11-31 (75)
124 PF06679 DUF1180: Protein of u 35.6 26 0.00057 31.8 2.0 11 709-719 110-120 (163)
125 PF12606 RELT: Tumour necrosis 35.4 35 0.00077 24.0 2.2 19 704-722 11-29 (50)
126 PF14991 MLANA: Protein melan- 35.1 7.5 0.00016 32.2 -1.3 17 706-722 36-53 (118)
127 PF11346 DUF3149: Protein of u 33.8 25 0.00055 23.7 1.2 20 706-725 23-42 (42)
128 smart00367 LRR_CC Leucine-rich 32.4 33 0.00072 20.1 1.5 11 131-141 2-12 (26)
129 PF02038 ATP1G1_PLM_MAT8: ATP1 29.7 33 0.00072 24.0 1.3 16 704-719 23-38 (50)
130 PF13260 DUF4051: Protein of u 29.6 59 0.0013 22.2 2.4 40 1-40 1-44 (54)
131 PHA03265 envelope glycoprotein 29.3 19 0.00042 36.4 0.2 15 710-724 366-380 (402)
132 PTZ00087 thrombosponding-relat 29.0 48 0.001 32.2 2.7 28 695-722 298-325 (340)
133 PF15345 TMEM51: Transmembrane 27.6 55 0.0012 31.4 2.8 20 704-723 68-87 (233)
134 KOG3763 mRNA export factor TAP 26.9 33 0.00071 37.4 1.4 64 537-600 216-283 (585)
135 PF02480 Herpes_gE: Alphaherpe 26.0 23 0.00049 38.3 0.0 20 703-722 366-385 (439)
136 PF02950 Conotoxin: Conotoxin; 25.5 36 0.00077 26.3 1.1 8 66-73 60-67 (75)
137 PHA03099 epidermal growth fact 25.5 58 0.0013 27.8 2.3 26 695-720 105-130 (139)
138 PF08374 Protocadherin: Protoc 25.4 16 0.00034 34.4 -1.1 24 687-710 36-59 (221)
139 TIGR01495 ETRAMP Plasmodium ri 25.4 73 0.0016 25.4 2.7 19 703-721 62-80 (85)
140 TIGR00864 PCC polycystin catio 25.3 43 0.00093 44.0 2.2 33 569-601 1-33 (2740)
141 PF01102 Glycophorin_A: Glycop 24.4 36 0.00079 29.2 1.0 17 703-719 78-94 (122)
142 TIGR03024 arch_pef_cterm PEF-C 24.2 51 0.0011 19.6 1.2 8 713-720 18-25 (26)
143 KOG3763 mRNA export factor TAP 23.5 39 0.00084 36.9 1.2 37 441-477 216-254 (585)
144 PF10873 DUF2668: Protein of u 22.6 91 0.002 27.3 3.0 22 702-723 74-95 (155)
145 PF11857 DUF3377: Domain of un 22.5 1.3E+02 0.0028 23.1 3.4 10 693-702 30-39 (74)
146 PF12768 Rax2: Cortical protei 22.4 52 0.0011 33.2 1.8 14 703-716 240-253 (281)
147 PF06697 DUF1191: Protein of u 22.4 58 0.0013 32.4 2.0 9 688-696 209-217 (278)
148 PF11980 DUF3481: Domain of un 22.0 54 0.0012 25.7 1.3 8 711-718 35-42 (87)
149 KOG1219 Uncharacterized conser 21.7 2.2E+02 0.0048 37.3 6.8 21 634-654 3911-3931(4289)
150 PF15065 NCU-G1: Lysosomal tra 21.6 52 0.0011 34.2 1.6 19 703-721 330-348 (350)
151 PF06024 DUF912: Nucleopolyhed 20.4 33 0.00072 28.5 -0.1 26 691-716 57-82 (101)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.5e-78 Score=723.69 Aligned_cols=582 Identities=36% Similarity=0.586 Sum_probs=459.8
Q ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccceeeCCCCCEEEEEcCCCCCccccCcccc
Q 045649 24 DSTKEALALLKWKRSLQNQNSSLLTSWTLYPANATNVPSYSKAKLSPCAWVGISCNQAERVISINLSSMGLNGTLQEFAF 103 (725)
Q Consensus 24 ~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~l 103 (725)
..++|+.||++||+++. +|.+.+.+|+ ... +||.|.||+|+..++|+.|+++++.++|.++ ..+
T Consensus 26 ~~~~~~~~l~~~~~~~~-~~~~~~~~w~----~~~----------~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~-~~~ 89 (968)
T PLN00113 26 LHAEELELLLSFKSSIN-DPLKYLSNWN----SSA----------DVCLWQGITCNNSSRVVSIDLSGKNISGKIS-SAI 89 (968)
T ss_pred CCHHHHHHHHHHHHhCC-CCcccCCCCC----CCC----------CCCcCcceecCCCCcEEEEEecCCCccccCC-hHH
Confidence 35689999999999996 5666788996 556 8999999999988899999999999998876 678
Q ss_pred cCCCCCCEEECCCCCCCCCCccccC-CCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCC
Q 045649 104 SSFPHLVRLNLSFNIVFGTIPPQVG-NLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLIN 182 (725)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 182 (725)
..+++|++|+|++|.+.+.+|..+. .+++|++|++++|++++.+|. +.+++|++|++++|.+.+.+|..++++++|+
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 9999999999999999988887765 899999999999999888775 4688899999999988888888888888888
Q ss_pred EEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeeccc
Q 045649 183 ELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNS 262 (725)
Q Consensus 183 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 262 (725)
+|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccc
Q 045649 263 LSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPAS 342 (725)
Q Consensus 263 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 342 (725)
+++.+|..++++++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+.++++|+.|++++|.+.+..|..
T Consensus 248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 87777877888888888888888777777777777777777777777777666766666666666666666666666666
Q ss_pred cCCCcccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCc
Q 045649 343 IGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLE 422 (725)
Q Consensus 343 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 422 (725)
+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|..+.. +++|+
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~------------------------~~~L~ 383 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS------------------------SGNLF 383 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC------------------------cCCCC
Confidence 666666666666666666555555555555555555555555555544444 44455
Q ss_pred EEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCe
Q 045649 423 RVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNH 502 (725)
Q Consensus 423 ~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 502 (725)
.+++++|.+.+..|..+..+++|+.|++++|++++.+|..+..+++|+.+++++|.+++.+|..+..+++|+.|++++|+
T Consensus 384 ~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred EEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 55555555555555555555666666666666666666666667777777777777776666666666777777777776
Q ss_pred eeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchh
Q 045649 503 IVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIE 582 (725)
Q Consensus 503 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 582 (725)
+.+.+|..+ ..++|+.|++++|++++..|..+.++++|+.|+|++|++.+.+|..
T Consensus 464 ~~~~~p~~~-------------------------~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 518 (968)
T PLN00113 464 FFGGLPDSF-------------------------GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518 (968)
T ss_pred eeeecCccc-------------------------ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH
Confidence 665554322 1256777777777777777778888888888899999888889999
Q ss_pred hhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCCCCCcCce--
Q 045649 583 VEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTVFKDA-- 660 (725)
Q Consensus 583 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~-- 660 (725)
+.++++|++|+|++|.+++.+|..++.+++|+.|++++|++++.+|..+.++++|+++++++|++.|.+|..++|.++
T Consensus 519 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~ 598 (968)
T PLN00113 519 LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINA 598 (968)
T ss_pred HcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccCh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred -ecccCCCCCCCC
Q 045649 661 -HVEGNKGLCGNV 672 (725)
Q Consensus 661 -~~~gn~~lc~~~ 672 (725)
.|.||+.+||.+
T Consensus 599 ~~~~~n~~lc~~~ 611 (968)
T PLN00113 599 SAVAGNIDLCGGD 611 (968)
T ss_pred hhhcCCccccCCc
Confidence 799999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.6e-62 Score=582.79 Aligned_cols=512 Identities=38% Similarity=0.542 Sum_probs=393.5
Q ss_pred CCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccC-CCCCCCEEEccccccCCCCccccCCCCCCCEEE
Q 045649 131 SELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIG-QLNLINELALCHNNLHGPIPPSLGNLSNLANFY 209 (725)
Q Consensus 131 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 209 (725)
.+++.|++++|.+++.+|..+..+++|++|++++|++.+.+|..+. ++++|++|++++|++++.+|. ..+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 4688899999988888888888888999999988888888887654 788888888888888777664 3466777777
Q ss_pred ecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCccCCc
Q 045649 210 LNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSG 289 (725)
Q Consensus 210 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 289 (725)
+++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 77777776777777777777777777777766667667777777777777777666666666666666666666666666
Q ss_pred cCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhcc
Q 045649 290 SIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGY 369 (725)
Q Consensus 290 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 369 (725)
.+|..++++++|++|++++|.+++.+|..+.++++|+.|++++|.+.+.+|..+.++++|+.|
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L----------------- 289 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL----------------- 289 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE-----------------
Confidence 666666666666666666666655555555555555555555555555444444444444444
Q ss_pred CCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEE
Q 045649 370 LKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLD 449 (725)
Q Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 449 (725)
++++|.+.+.+|..+.++++|+.+++++|.+.+.+|..+..+++|+.|++++|.+++..|..+..+++|+.|+
T Consensus 290 -------~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 290 -------DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred -------ECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 4444444444444445555555555555555555555555666666666666666666666666677777777
Q ss_pred CcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCC
Q 045649 450 FSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSG 529 (725)
Q Consensus 450 ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 529 (725)
+++|++++.+|..+..+++|+.+++++|.+.+.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccC
Confidence 77777777777777777788888888888888888888888999999999999998899899999999999999999999
Q ss_pred CCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccC
Q 045649 530 GIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICN 609 (725)
Q Consensus 530 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 609 (725)
.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+.++++|++|+|++|++.+.+|..+.+
T Consensus 443 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 521 (968)
T PLN00113 443 RINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS 521 (968)
T ss_pred ccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcC
Confidence 888888899999999999999998888765 4589999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCCC----CCcCceecccCCCCC
Q 045649 610 MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS----TVFKDAHVEGNKGLC 669 (725)
Q Consensus 610 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~----~~~~~~~~~gn~~lc 669 (725)
+++|++|+|++|.+++.+|..|..+++|++||+++|+++|.+|.. ..+..+.+.+|+..+
T Consensus 522 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 999999999999999999999999999999999999999999974 234444677777554
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.7e-43 Score=341.02 Aligned_cols=486 Identities=31% Similarity=0.448 Sum_probs=323.7
Q ss_pred CCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEec
Q 045649 132 ELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLN 211 (725)
Q Consensus 132 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 211 (725)
-|+.+++++|.+. .+-+.+.++..|.+|++.+|++. ..|++++.+..++.++.++|++. .+|+.++.+.+++.++.+
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 3344444444443 22333444444444444444444 44445555555555555555554 455555555666666666
Q ss_pred CCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCccCCccC
Q 045649 212 NNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSI 291 (725)
Q Consensus 212 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 291 (725)
+|.+ ..+|+.++.+-.|+.++..+|+++ ..|.++..+.+|..+++.+|.+. ..|...-+++.|+++|...|-++ .+
T Consensus 123 ~n~~-~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 123 SNEL-KELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred ccce-eecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cC
Confidence 6655 334455666666666666666666 44666666677777777777776 33333334777777777777765 67
Q ss_pred CccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCcccc-CCCcccceeecccCccccccchhhccC
Q 045649 292 PLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASI-GNLSSLRLLYLYNNGLYGFVPEEIGYL 370 (725)
Q Consensus 292 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l 370 (725)
|..++.+.+|+-|++..|++. ..| .|.+|..|++++++.|++. .+|... ..++++..||+++|+++ ..|+.+..+
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL 274 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL 274 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence 777777888888888888776 445 6788888888888888887 455444 47888888888888887 567778888
Q ss_pred CcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCC---CcEEE--ccCCcCcccccccccCCCCC
Q 045649 371 KSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTS---LERVR--FNQNNLSGKVYEAFGYHPNL 445 (725)
Q Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~---L~~L~--l~~n~l~~~~~~~~~~~~~L 445 (725)
++|++||+++|.++ ..|..++++ +|+.+.+.+|.+... ...+-++.. |++|+ +..-.++.... ..-
T Consensus 275 rsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~------~~e 345 (565)
T KOG0472|consen 275 RSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEG------GTE 345 (565)
T ss_pred hhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcc------ccc
Confidence 88888888888888 567778888 888888888876422 111111110 11110 00000000000 000
Q ss_pred CEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCC---CCCcEEeCCCCeeeecccccccCCCCCCee-e
Q 045649 446 TFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDL---SKLQVLDLSSNHIVGEIPVQLGKLFSLTKL-I 521 (725)
Q Consensus 446 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~ 521 (725)
..-+. ............+.+.|+++.-+++. +|+....- .-.+..+++.|++. .+|..+..++.+.+. .
T Consensus 346 ~~~t~-----~~~~~~~~~~~i~tkiL~~s~~qlt~-VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~ 418 (565)
T KOG0472|consen 346 TAMTL-----PSESFPDIYAIITTKILDVSDKQLTL-VPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLV 418 (565)
T ss_pred ccCCC-----CCCcccchhhhhhhhhhccccccccc-CCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHH
Confidence 00000 00011112234455666666666553 34332222 23778999999987 778877777666554 4
Q ss_pred CCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCc
Q 045649 522 LNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDE 601 (725)
Q Consensus 522 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 601 (725)
+++|.+ +.+|..++.+++|..|+|++|.+.+ +|..++.+..|+.||+|.|+|. .+|..+..+..++.+-.++|++..
T Consensus 419 lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~ 495 (565)
T KOG0472|consen 419 LSNNKI-SFVPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGS 495 (565)
T ss_pred hhcCcc-ccchHHHHhhhcceeeecccchhhh-cchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccc
Confidence 555555 4889999999999999999999887 8889999999999999999996 789988888888888888899988
Q ss_pred cCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCccc
Q 045649 602 EMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648 (725)
Q Consensus 602 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 648 (725)
..|..+.+|.+|..|||.+|.+. .+|..++++++|++|++++|+|.
T Consensus 496 vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 496 VDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 88888999999999999999999 78899999999999999999998
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-39 Score=330.68 Aligned_cols=399 Identities=24% Similarity=0.239 Sum_probs=293.1
Q ss_pred CCEEEcccCcCcccCCcCccCC--CCCceEEeecccccccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEc
Q 045649 229 LSTLDLSKNQLSGLIPFSLGNL--SNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSL 306 (725)
Q Consensus 229 L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 306 (725)
-+.||.+++.+....-..+... +.-+.|++++|.++...+..|.++++|+++++..|.++ .+|.......+|+.|+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 3456777776653321112111 23345777777777666666777777777777777776 56655555555777777
Q ss_pred cCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecccCccCcc
Q 045649 307 FSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGA 386 (725)
Q Consensus 307 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~ 386 (725)
.+|.++..-.+.++.++.|++|||+.|.++.+....|..-.++++|+|+.|.|+..-...|..+.+|..|.++.|+++
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-- 210 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-- 210 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc--
Confidence 777666555555666666666666666666443344444445555555555555444444444445555555555554
Q ss_pred CCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCC
Q 045649 387 IPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNF 466 (725)
Q Consensus 387 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~ 466 (725)
...+..|.++++|+.|++..|++.-...-+|.++++|+.|.+..|++...-...|..+
T Consensus 211 ----------------------tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l 268 (873)
T KOG4194|consen 211 ----------------------TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL 268 (873)
T ss_pred ----------------------ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeee
Confidence 4444455555555555555555554444556667777777777777766666677777
Q ss_pred CCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEc
Q 045649 467 PKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDL 546 (725)
Q Consensus 467 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 546 (725)
.+++.|+++.|++...-..++.++++|+.|++++|.|..+.+..+..+++|++|+|++|+++..-+..|..+..|++|+|
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 77777778778777777778889999999999999999888999999999999999999999888888999999999999
Q ss_pred cCCcccccchhhhhcccCCCeeeCcCCcCCcCCc---hhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcc
Q 045649 547 SANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIP---IEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNL 623 (725)
Q Consensus 547 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 623 (725)
++|+++.+...+|..+++|++|||++|.++..|. ..|.+|++|+.|++-+|++..+...+|..+.+||.|||.+|.+
T Consensus 349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 9999999888899999999999999999987664 4588899999999999999888888999999999999999999
Q ss_pred cccCCccccCCCCCCeeeCcCCcccccCCC
Q 045649 624 SGFIPRCFEGMHNLSHIDISYNELQGPIPN 653 (725)
Q Consensus 624 ~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 653 (725)
..+-|++|..+ .|++|-+..-.+-+.+--
T Consensus 429 aSIq~nAFe~m-~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 429 ASIQPNAFEPM-ELKELVMNSSSFLCDCQL 457 (873)
T ss_pred eeecccccccc-hhhhhhhcccceEEeccH
Confidence 99999999999 899998877777666543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-38 Score=320.75 Aligned_cols=353 Identities=25% Similarity=0.257 Sum_probs=320.7
Q ss_pred CCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecc
Q 045649 300 SLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLC 379 (725)
Q Consensus 300 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls 379 (725)
.-+.|++++|++...-+..|.++++|+++++..|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.||+|
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 3456888888888877788888999999999999888 677766666779999999999988888888889999999999
Q ss_pred cCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCcccccc
Q 045649 380 TNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEI 459 (725)
Q Consensus 380 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 459 (725)
.|.++...-..|..-.+++.|++++|.++..-...|.++.+|..|.++.|+++...+..|..+++|+.|++..|.+.-..
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 99998666667877789999999999999888889999999999999999999999999999999999999999998766
Q ss_pred CccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCC
Q 045649 460 SFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLT 539 (725)
Q Consensus 460 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 539 (725)
...|.++++|+.|.+..|.++..-...|..+.++++|+|+.|+++..-..++.++++|+.|++|+|.+..+-++.+..++
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 77899999999999999999988888999999999999999999988888999999999999999999988889999999
Q ss_pred CCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCc---cccCCCCCCEE
Q 045649 540 ELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPF---QICNMKSLEKL 616 (725)
Q Consensus 540 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L 616 (725)
+|++|+|++|+++...+..|..+..|++|+|++|++...--..|..+++|+.|||++|.++..+.+ .|..+++|+.|
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 999999999999999999999999999999999999887788899999999999999999887764 47789999999
Q ss_pred eCCCCcccccCCccccCCCCCCeeeCcCCcccccCCC
Q 045649 617 NLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN 653 (725)
Q Consensus 617 ~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 653 (725)
++.+|++..+...+|.++..|++||+.+|.+...-|.
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n 434 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN 434 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence 9999999977778999999999999999998765554
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.2e-42 Score=335.71 Aligned_cols=489 Identities=29% Similarity=0.396 Sum_probs=338.3
Q ss_pred EEEEEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEcc
Q 045649 84 VISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFD 163 (725)
Q Consensus 84 v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 163 (725)
...+.++.+.+.... ..+.++..|.+|++++|.+. ..|++++.+..++.++.++|++. .+|+.++.+.+|+.++.+
T Consensus 47 l~~lils~N~l~~l~--~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLR--EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred hhhhhhccCchhhcc--HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 456777777766433 46788999999999999885 57788999999999999999998 789999999999999999
Q ss_pred CCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccC
Q 045649 164 VNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLI 243 (725)
Q Consensus 164 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 243 (725)
+|.+. .+|++++.+..|+.++..+|+++ ..|+.++++.+|..+++.+|.+....|..+. ++.|++||...|.++ .+
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cC
Confidence 99987 77888999999999999999998 6788899999999999999998666555554 899999999998886 77
Q ss_pred CcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCccCCccCCcccc-CCCCCCEEEccCCcCCCCCCcccccC
Q 045649 244 PFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLG-NLSSLTVMSLFSNSLSGFIPPILGNL 322 (725)
Q Consensus 244 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l 322 (725)
|..++.+.+|.-|++..|.+. .+| .|..|..|++++++.|++. .+|.... +++++.+||+..|+++ ..|..+.-+
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL 274 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL 274 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence 889999999999999999998 677 7899999999999999987 5666554 8899999999999997 578888888
Q ss_pred CCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCC--cccEEecccCccCccCCccCcCCCCCcEE
Q 045649 323 KSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLK--SIFELDLCTNRLSGAIPHSISNLTELVLV 400 (725)
Q Consensus 323 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 400 (725)
.+|+.||+++|.++ ..|..++++ .|+.|.+.+|.+...-.+.+..-+ -|++|.= .++. +.+.+-..=+.
T Consensus 275 rsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~~---dglS~se~~~e- 345 (565)
T KOG0472|consen 275 RSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIKD---DGLSQSEGGTE- 345 (565)
T ss_pred hhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhcc---CCCCCCccccc-
Confidence 99999999999998 567888988 899999999987643222221100 1121110 1110 00000000000
Q ss_pred eCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCC--CCCCEEECcCCccccccCccccCCCCCcEEeCCCcc
Q 045649 401 NICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYH--PNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNN 478 (725)
Q Consensus 401 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~--~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 478 (725)
+.-..............+.+.|++++-+++....+.|..- .-....+++.|++.
T Consensus 346 --~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~---------------------- 401 (565)
T KOG0472|consen 346 --TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC---------------------- 401 (565)
T ss_pred --ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh----------------------
Confidence 0000000000112223344455555555544333333211 12445555555543
Q ss_pred ccCCCCcccCCCCCCcE-EeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchh
Q 045649 479 IYGSIPTEIGDLSKLQV-LDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPK 557 (725)
Q Consensus 479 l~~~~~~~~~~l~~L~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 557 (725)
++|..+..+..+++ +++++|.+ +..|..+..+++|..|++++|.+. .+|..++.+..|+.|++|.|+|.. .|.
T Consensus 402 ---elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~-lP~ 475 (565)
T KOG0472|consen 402 ---ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRM-LPE 475 (565)
T ss_pred ---hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccccc-chH
Confidence 33443333333333 33333333 355666666667777777766665 566666677777777777777655 666
Q ss_pred hhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCccc
Q 045649 558 SIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLS 624 (725)
Q Consensus 558 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 624 (725)
++..+..++.+-.++|++....|..+.++.+|.+|||.+|.+. .+|..+++|++|++|++++|++.
T Consensus 476 ~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 476 CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 6666666666666667776555566777777777777777773 45556777777777777777776
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=6e-38 Score=334.79 Aligned_cols=493 Identities=32% Similarity=0.360 Sum_probs=324.4
Q ss_pred ccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCC
Q 045649 103 FSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLIN 182 (725)
Q Consensus 103 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 182 (725)
+..-.+++.|++..|.+...--+.+.+.-+|+.||+++|++. ..|..+..+++|+.|+++.|.+. ..|.+..++.+|+
T Consensus 17 i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~ 94 (1081)
T KOG0618|consen 17 ILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQ 94 (1081)
T ss_pred hccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcch
Confidence 334444777777777654322234455555777777777776 66777777777777777777766 6667777777777
Q ss_pred EEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeeccc
Q 045649 183 ELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNS 262 (725)
Q Consensus 183 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 262 (725)
++.|..|.+. ..|..+..+.+|+.|++++|.+ +.+|..+..+..++.+..++|.-... ++... .+.+++..|.
T Consensus 95 ~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~ 167 (1081)
T KOG0618|consen 95 YLNLKNNRLQ-SLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNV 167 (1081)
T ss_pred hheeccchhh-cCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhh
Confidence 7777777665 5677777777777777777776 55666677777777777777722111 22222 6666777777
Q ss_pred ccccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccc
Q 045649 263 LSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPAS 342 (725)
Q Consensus 263 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 342 (725)
+.+.++..+..++. .|+|.+|.+. -..+..+.+|+.+....|++.... -.-++++.|+.++|.++...+..
T Consensus 168 l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~p 238 (1081)
T KOG0618|consen 168 LGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVHP 238 (1081)
T ss_pred cccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecccc
Confidence 66666666666655 6777777665 134556666777776666665321 12356667777777666332221
Q ss_pred cCCCcccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCc
Q 045649 343 IGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLE 422 (725)
Q Consensus 343 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 422 (725)
.-.+|++++++.|++++ +|++++.+.+|+.+++.+|+++ .+|..+...++|+.+.+..|++. .+|......++|+
T Consensus 239 --~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~ 313 (1081)
T KOG0618|consen 239 --VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLR 313 (1081)
T ss_pred --ccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceee
Confidence 12356777777777664 3466777777777777777775 55666666666666666666664 3444555566666
Q ss_pred EEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCe
Q 045649 423 RVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNH 502 (725)
Q Consensus 423 ~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 502 (725)
+|++..|++.......+..... .+..++.+.|++.......=..++.|+.|++.+|.
T Consensus 314 tLdL~~N~L~~lp~~~l~v~~~-----------------------~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~ 370 (1081)
T KOG0618|consen 314 TLDLQSNNLPSLPDNFLAVLNA-----------------------SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH 370 (1081)
T ss_pred eeeehhccccccchHHHhhhhH-----------------------HHHHHhhhhccccccccccchhhHHHHHHHHhcCc
Confidence 6666666655333322221111 13334444444332221122345678888888888
Q ss_pred eeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchh
Q 045649 503 IVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIE 582 (725)
Q Consensus 503 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 582 (725)
+++..-..+.++.+|+.|+|++|++.......+.++..|+.|+||+|+++. +|..+..+..|++|...+|++. ..| +
T Consensus 371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~-~fP-e 447 (1081)
T KOG0618|consen 371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLL-SFP-E 447 (1081)
T ss_pred ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCcee-ech-h
Confidence 887777777888888999999988875555567888889999999999887 7788889999999999999886 566 8
Q ss_pred hhcCCCCCEEeCCCCCCCcc-CCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCC
Q 045649 583 VEKLIHLSELDLSYNFLDEE-MPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645 (725)
Q Consensus 583 ~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N 645 (725)
+..++.|+.+|+|.|+++.. +|+.... ++|++||+++|.-.-..-..|..+.++..+++.-|
T Consensus 448 ~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 88899999999999998754 3333322 78999999999754455566777777777777766
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=3e-37 Score=329.41 Aligned_cols=487 Identities=26% Similarity=0.285 Sum_probs=350.5
Q ss_pred CEEEEEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEc
Q 045649 83 RVISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYF 162 (725)
Q Consensus 83 ~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 162 (725)
+++.+++..+-+... |.......-+|++||+++|.+ +.+|..+..+++|+.|+++.|.+. ..|....++.+|+++.|
T Consensus 22 ~~~~ln~~~N~~l~~-pl~~~~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSR-PLEFVEKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNL 98 (1081)
T ss_pred HHHhhhccccccccC-chHHhhheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhhee
Confidence 477777776654432 122334444599999999987 578889999999999999999988 67888999999999999
Q ss_pred cCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCccc
Q 045649 163 DVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGL 242 (725)
Q Consensus 163 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 242 (725)
.+|.+. ..|.++..+++|+.|++++|.+. .+|..+..++.++.+..++|.....++ ... ++.+++..|.+.+.
T Consensus 99 ~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg----~~~-ik~~~l~~n~l~~~ 171 (1081)
T KOG0618|consen 99 KNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLG----QTS-IKKLDLRLNVLGGS 171 (1081)
T ss_pred ccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhc----ccc-chhhhhhhhhcccc
Confidence 999887 88999999999999999999987 788889999999999999993323222 222 88999999999988
Q ss_pred CCcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccC
Q 045649 243 IPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNL 322 (725)
Q Consensus 243 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 322 (725)
++.++..+.. .|+|.+|.+. . ..+.++.+|+.+....|++.... -.-++|+.|+.+.|.++...+.. .-
T Consensus 172 ~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~p--~p 240 (1081)
T KOG0618|consen 172 FLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVHP--VP 240 (1081)
T ss_pred hhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecccc--cc
Confidence 8888887777 7999999887 2 34678899999999999887432 12478999999999998443322 23
Q ss_pred CCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeC
Q 045649 323 KSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNI 402 (725)
Q Consensus 323 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l 402 (725)
.+|+.+++++|+++ .+|.++..+.+|+.++..+|.++ .+|..+....+|+.+++..|.+. -+|.....+++|+.|++
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 68999999999999 45699999999999999999995 67888888899999999999998 67777888999999999
Q ss_pred CCCcccCcCCccccCCCC-CcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccC
Q 045649 403 CENHFFGPIPKSLRNLTS-LERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYG 481 (725)
Q Consensus 403 ~~n~~~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 481 (725)
..|.+....+..+.-... +..+..+.|++.......=.. .+.|+.|++.+|.++.
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~------------------------~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN------------------------HAALQELYLANNHLTD 373 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchh------------------------hHHHHHHHHhcCcccc
Confidence 999986554433333322 555666666554332111112 3344455555555554
Q ss_pred CCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhc
Q 045649 482 SIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIAN 561 (725)
Q Consensus 482 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 561 (725)
..-..+.+.+.|+.|+|++|++.......+.+++.|+.|+||+|+++ .+|..+..+..|++|...+|.+.. .| .+..
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~ 450 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQ 450 (1081)
T ss_pred cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhh
Confidence 44444555556666666666665333344556666666666666666 556666666667777666666655 44 5666
Q ss_pred ccCCCeeeCcCCcCCcCC-chhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCC
Q 045649 562 LLKLYYLNLSNNQFSQKI-PIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHN 621 (725)
Q Consensus 562 l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 621 (725)
++.|+.+|+|.|+++... |..... ++|++||+++|.-.......|..++.+...++.-|
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 677777777777665432 222222 67777777777643334444555555555555554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3e-34 Score=292.89 Aligned_cols=365 Identities=26% Similarity=0.365 Sum_probs=269.1
Q ss_pred CCCCCCEEECCCCCCC-CCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCE
Q 045649 105 SFPHLVRLNLSFNIVF-GTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINE 183 (725)
Q Consensus 105 ~l~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 183 (725)
-++.+|-.|+++|.|+ +.+|..+..++.++.|.|...++. .+|+.++.|.+|++|.+++|++. .+-..+..++.|+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 3556677777777777 457777778888888888877777 67888888888888888888776 34445677788888
Q ss_pred EEccccccCC-CCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeeccc
Q 045649 184 LALCHNNLHG-PIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNS 262 (725)
Q Consensus 184 L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 262 (725)
+++.+|++.. -+|..+..+..|+.|||++|++ ...|..+..-+++-+|+||+|+|..+...-+.+++.|-.|||++|.
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL-REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhh-hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 8888887753 4677778888888888888887 4567777777888888888888874433445678888888888888
Q ss_pred ccccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCC-CCCCcccccCCCCCcccccCccCCCcCcc
Q 045649 263 LSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLS-GFIPPILGNLKSLSALGLHINQLNGVIPA 341 (725)
Q Consensus 263 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 341 (725)
+. .+|+.+..+..|++|+|++|.+....-..+..+++|++|.+++.+-+ ..+|..+..+.+|..+|++.|.+. .+|.
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe 239 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE 239 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence 87 67777888888888888888776544444555677777888776543 347777888888888888888887 6788
Q ss_pred ccCCCcccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCccc-CcCCccccCCCC
Q 045649 342 SIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFF-GPIPKSLRNLTS 420 (725)
Q Consensus 342 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~l~~~~~ 420 (725)
.+.++++|+.|+|++|+++.. ....+...+|++|++|.|+++ .+|++++.+++|+.|.+.+|+++ .-+|..++.+.+
T Consensus 240 cly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred HHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence 888888888888888888743 334455668888888888888 77888888888888888888765 336777777777
Q ss_pred CcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCcc
Q 045649 421 LERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNN 478 (725)
Q Consensus 421 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 478 (725)
|+.+..++|.+. ..|+.++.|+.|+.|.++.|.+. .+|..+.-++.|+.|++..|.
T Consensus 318 Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 318 LEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 777777776654 56666777777777777777654 345555555666666665554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=8.1e-34 Score=289.73 Aligned_cols=366 Identities=28% Similarity=0.412 Sum_probs=230.9
Q ss_pred CCCCceEEeeccccc-ccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcc
Q 045649 250 LSNLGILYLYSNSLS-GHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSAL 328 (725)
Q Consensus 250 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 328 (725)
++-.+-.|+++|.++ +.+|.....++.++.|.|...++. .+|..++.+.+|++|.+++|++... -..+..++.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHH
Confidence 455667788888887 467777788888888888777776 6777777778888888877777532 3346677777777
Q ss_pred cccCccCCC-cCccccCCCcccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcc
Q 045649 329 GLHINQLNG-VIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHF 407 (725)
Q Consensus 329 ~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 407 (725)
.+..|++.. -+|..+..+..|+.|+|++|++. ..|..+..-+++..|++|+|+|..+....|.++..|-.|++++|++
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 777777653 25666666777777777777776 4666777777777777777777633333455667777777777766
Q ss_pred cCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCccc
Q 045649 408 FGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEI 487 (725)
Q Consensus 408 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 487 (725)
. .+|+.+..+..|++|.+++|.+.-.....+..+.+|++|.+++.+-+ ...+|.++
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT-----------------------l~N~Ptsl 218 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT-----------------------LDNIPTSL 218 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch-----------------------hhcCCCch
Confidence 4 34445555666666666666554333333334444555555443322 23355555
Q ss_pred CCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCe
Q 045649 488 GDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYY 567 (725)
Q Consensus 488 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 567 (725)
..+.+|..+|+|.|.+. ..|..+.++++|+.|+||+|+++ .+....+.+.+|++|++|.|+++. .|.++..+++|+.
T Consensus 219 d~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTK 295 (1255)
T ss_pred hhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhcc-chHHHhhhHHHHH
Confidence 56666666666666654 55666666666666666666665 334444555566666666666655 5666666666666
Q ss_pred eeCcCCcCC-cCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCc
Q 045649 568 LNLSNNQFS-QKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNE 646 (725)
Q Consensus 568 L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~ 646 (725)
|.+.+|++. .-||..++.+..|+++..++|.+ ...|+.+..|..|+.|.|++|++. ..|+.+.-++.|+.||+..|+
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~L-ElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL-ELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHHHhhcccc-ccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 666666653 23566666666666666666655 455666666666666666666665 456666666666666666665
Q ss_pred c
Q 045649 647 L 647 (725)
Q Consensus 647 l 647 (725)
-
T Consensus 374 n 374 (1255)
T KOG0444|consen 374 N 374 (1255)
T ss_pred C
Confidence 3
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=2e-23 Score=250.39 Aligned_cols=358 Identities=23% Similarity=0.253 Sum_probs=203.4
Q ss_pred CCCEEEEEcCCCCCc-cccCcccccCCCCCCEEECCCCCC------CCCCccccCCCC-CCCEEeCCCCCCCccCCccCc
Q 045649 81 AERVISINLSSMGLN-GTLQEFAFSSFPHLVRLNLSFNIV------FGTIPPQVGNLS-ELQYLDLGSNQLTGVIPQEIG 152 (725)
Q Consensus 81 ~~~v~~l~l~~~~l~-~~~~~~~l~~l~~L~~L~Ls~n~~------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~ 152 (725)
+.+|.+|.+.-..+. -.++..+|..+++|+.|.+..+.. ...+|..+..++ +|+.|++.++.+. .+|..|
T Consensus 531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f- 608 (1153)
T PLN03210 531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF- 608 (1153)
T ss_pred cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-
Confidence 345666665433332 123445678888888888865532 234566666654 5888888887776 566666
Q ss_pred CCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEE
Q 045649 153 HLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTL 232 (725)
Q Consensus 153 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 232 (725)
...+|++|++.+|.+. .+|..+..+++|+.|+++++...+.+| .+..+++|++|++++|.....+|..++++++|++|
T Consensus 609 ~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 4677888888887776 566677778888888887765444555 36777788888888777667777777777888888
Q ss_pred EcccCcCcccCCcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCC
Q 045649 233 DLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLS 312 (725)
Q Consensus 233 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 312 (725)
++++|..-+.+|..+ ++++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|..+ .+++|++|.+.++...
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence 887765444566554 6777777777777655455532 356777777777765 455444 4566666666553321
Q ss_pred C-------CCCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecccCccCc
Q 045649 313 G-------FIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSG 385 (725)
Q Consensus 313 ~-------~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 385 (725)
. ..+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|....
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence 1 111111223445555555554444455555555555555555543333344333 34455555555543332
Q ss_pred cCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCC
Q 045649 386 AIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQN 453 (725)
Q Consensus 386 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n 453 (725)
.+|.. .++|+.|++++|.+. .+|.++..+++|+.|++.+|+--..++..+..+++|+.+++++|
T Consensus 840 ~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 840 TFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 33321 134444445444443 23444444444444444443222223333334444444444443
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=3.5e-23 Score=248.30 Aligned_cols=346 Identities=22% Similarity=0.256 Sum_probs=186.9
Q ss_pred cccCCCCCCCEEeCCCCC------CCccCCccCcCCC-CCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCcc
Q 045649 125 PQVGNLSELQYLDLGSNQ------LTGVIPQEIGHLN-QLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPP 197 (725)
Q Consensus 125 ~~~~~l~~L~~L~Ls~n~------l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~ 197 (725)
.+|.+|++|++|.+..+. ....+|..+..++ +|+.|++.++.+. .+|..| ...+|++|+++++.+. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 446667777777665442 2224555555543 4666666666554 555555 3466666666666655 3455
Q ss_pred ccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCccccCCCCC
Q 045649 198 SLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSL 277 (725)
Q Consensus 198 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 277 (725)
.+..+++|+.|+|+++...+.+|. ++.+++|++|++++|.....+|..+.++++|+.|++++|...+.+|..+ ++++|
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 556666666666666554444553 5556666666666655445556666666666666666654444555443 45666
Q ss_pred CEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccC
Q 045649 278 LQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNN 357 (725)
Q Consensus 278 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 357 (725)
+.|++++|.....+|.. .++|+.|++++|.+. .+|..+ .+++|+.|++.++.... +..
T Consensus 707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~-l~~---------------- 764 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEK-LWE---------------- 764 (1153)
T ss_pred CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhh-ccc----------------
Confidence 66666665444333322 235555566555554 233322 34455555544322110 000
Q ss_pred ccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccc
Q 045649 358 GLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYE 437 (725)
Q Consensus 358 ~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 437 (725)
.+....+.....+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|+.|++++|..-...|.
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence 0000111111223455566666655555555556666666666666554444455444 456666666666543333332
Q ss_pred cccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCe
Q 045649 438 AFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNH 502 (725)
Q Consensus 438 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 502 (725)
. .++|++|++++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 844 ~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 844 I---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred c---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 2 245666677666665 356666667777777777655444566666667777777777664
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=1.6e-25 Score=218.49 Aligned_cols=397 Identities=24% Similarity=0.245 Sum_probs=207.8
Q ss_pred CCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcC-ccCCccCCccccCCCCCCEEEc
Q 045649 228 SLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSE-NQLSGSIPLSLGNLSSLTVMSL 306 (725)
Q Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L 306 (725)
.-..++|..|.|+.+.|..|+.+++|+.|||++|+|+.+-|++|..+++|.+|-+-+ |+|+..-...|+++.+|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 455666777777766666667777777777777777666666666666665555544 6666444445666666666666
Q ss_pred cCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecccCccCcc
Q 045649 307 FSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGA 386 (725)
Q Consensus 307 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~ 386 (725)
.-|++.-.....|..++++..|.+.+|.+..+-...|..+..++.+.+..|.+... .+++.+.... ..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd-----CnL~wla~~~-------a~ 215 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD-----CNLPWLADDL-------AM 215 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc-----cccchhhhHH-------hh
Confidence 66666655556666666666666666666643334566666666666666653211 1111111100 00
Q ss_pred CCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEE--E-ccCCcCccc-ccccccCCCCCCEEECcCCccccccCcc
Q 045649 387 IPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERV--R-FNQNNLSGK-VYEAFGYHPNLTFLDFSQNNFYGEISFN 462 (725)
Q Consensus 387 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L--~-l~~n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 462 (725)
.|..++......-..+.+.++...-+..|... ++.+ . .+.+...++ ....|..+++|+.|++++|++++..+.+
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 11111111111111122222221111111111 1111 0 111112222 2234556666666666666666666666
Q ss_pred ccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCC-------------
Q 045649 463 WRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSG------------- 529 (725)
Q Consensus 463 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------- 529 (725)
|.+...+++|.+..|++...-...|.++..|+.|+|++|+|+...|..|..+.+|.+|++-.|.+.-
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhh
Confidence 6666666666666666655545556666666666666666666666666666666666666655420
Q ss_pred ----CCCcccCCCCCCcEEEccCCccccc---chhhh---------hcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEe
Q 045649 530 ----GIPLELGSLTELQYIDLSANKLRSW---IPKSI---------ANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELD 593 (725)
Q Consensus 530 ----~~~~~l~~l~~L~~L~Ls~n~l~~~---~~~~~---------~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 593 (725)
..|. -+....++.+++++..+... .|+.. ..++-+.+..=-.|+....+|..+.. .-.+|+
T Consensus 374 ~~~~~~~~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~--d~tely 450 (498)
T KOG4237|consen 374 KSVVGNPR-CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPV--DVTELY 450 (498)
T ss_pred CCCCCCCC-CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCc--hhHHHh
Confidence 0010 01122344555554433221 11111 11122222111112222233333221 334678
Q ss_pred CCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCC
Q 045649 594 LSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645 (725)
Q Consensus 594 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N 645 (725)
+.+|.++. +|.+ .+.+| .+|+++|+++..--..|.+++.|.+|-++||
T Consensus 451 l~gn~~~~-vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 451 LDGNAITS-VPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cccchhcc-cCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 88888854 4444 56677 8888888888777778888888888888886
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=1.6e-24 Score=211.54 Aligned_cols=419 Identities=22% Similarity=0.243 Sum_probs=269.4
Q ss_pred EccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeec-ccc
Q 045649 185 ALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYS-NSL 263 (725)
Q Consensus 185 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-n~l 263 (725)
+-++-.++ .+|..+. +.-..++|..|+|+...|.+|+.+++|+.|||++|.|+.+.|..|..+..|..|-+.+ |+|
T Consensus 52 dCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 52 DCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred EccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 33443444 4565543 4678899999999888889999999999999999999999999999999998888877 899
Q ss_pred cccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCC------
Q 045649 264 SGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNG------ 337 (725)
Q Consensus 264 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~------ 337 (725)
+......|+++..|+.|.+.-|++.-.....|..+++|..|.+..|.+.......+..+.+++.+.+..|.+..
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccch
Confidence 86666789999999999999999988888889999999999999999986655688999999999999887432
Q ss_pred ------cCccccCCCcccceeecccCccccccchhhcc-CCcccEEecccCccCccCC-ccCcCCCCCcEEeCCCCcccC
Q 045649 338 ------VIPASIGNLSSLRLLYLYNNGLYGFVPEEIGY-LKSIFELDLCTNRLSGAIP-HSISNLTELVLVNICENHFFG 409 (725)
Q Consensus 338 ------~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~ 409 (725)
..|..++......-..+.+.++...-+..+.. ..++..--.+.+...+.-| ..|..+++|+.+++++|+++.
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 12223333333444444444443332222221 1111111111222222222 346667777777777777777
Q ss_pred cCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCC-CcccC
Q 045649 410 PIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSI-PTEIG 488 (725)
Q Consensus 410 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~ 488 (725)
.-+.+|.....+++|.+..|++.......|.++..|+.|++.+|+++...|.+|.....|.+|++-.|.+.-.- -.|++
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~ 368 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLG 368 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHH
Confidence 77777777777777777777776666666667777777777777777666666766666766666655442110 00000
Q ss_pred CCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCC---CCcc---------cCCCCCCcEEEccCCcccccch
Q 045649 489 DLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGG---IPLE---------LGSLTELQYIDLSANKLRSWIP 556 (725)
Q Consensus 489 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~---------l~~l~~L~~L~Ls~n~l~~~~~ 556 (725)
.. +.+....|..| -+....++.+.+++..+... .|+. -..++-+.+..=-.|+....+|
T Consensus 369 ~W-------lr~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp 439 (498)
T KOG4237|consen 369 EW-------LRKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLP 439 (498)
T ss_pred HH-------HhhCCCCCCCC--CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcC
Confidence 00 00000001100 11122345555555433211 1111 1123333332222233333344
Q ss_pred hhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCC
Q 045649 557 KSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHN 621 (725)
Q Consensus 557 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 621 (725)
..+. ..-++|++.+|.++ .+|.+ .+.+| .+|+|+|+++..-...|.++++|.+|-|++|
T Consensus 440 ~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 440 RGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 3332 34568899999997 56766 56677 8999999998888888999999999999886
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=1.8e-20 Score=208.45 Aligned_cols=264 Identities=27% Similarity=0.326 Sum_probs=125.1
Q ss_pred CCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecc
Q 045649 300 SLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLC 379 (725)
Q Consensus 300 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls 379 (725)
.-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++. +|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence 3556777777776 3555443 366777777777663 343 13566666666666663 2321 2455666666
Q ss_pred cCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCcccccc
Q 045649 380 TNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEI 459 (725)
Q Consensus 380 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 459 (725)
+|.++ .+|..+ ++|+.|++++|+++. +|. . .++|+.|++++|++++.
T Consensus 271 ~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt~-LP~---~------------------------p~~L~~LdLS~N~L~~L- 317 (788)
T PRK15387 271 SNPLT-HLPALP---SGLCKLWIFGNQLTS-LPV---L------------------------PPGLQELSVSDNQLASL- 317 (788)
T ss_pred CCchh-hhhhch---hhcCEEECcCCcccc-ccc---c------------------------ccccceeECCCCccccC-
Confidence 66655 233211 334455555555432 221 1 23344444444444431
Q ss_pred CccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCC
Q 045649 460 SFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLT 539 (725)
Q Consensus 460 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 539 (725)
|.. ..+|+.|++++|.+++ +|.. ..+|+.|++++|++++ +|.. .++|+.|++++|++.+ +|.. ..
T Consensus 318 p~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~ 382 (788)
T PRK15387 318 PAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PS 382 (788)
T ss_pred CCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---cc
Confidence 110 1234444444444432 2211 1245555555555542 2321 1344555555555542 3322 13
Q ss_pred CCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCC
Q 045649 540 ELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLC 619 (725)
Q Consensus 540 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 619 (725)
+|+.|++++|++++ +|.. .++|+.|++++|++++ +|... .+|+.|++++|+++ .+|..+.++++|+.|+|+
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 45555555555554 2321 2345555555555542 33322 23445555555554 344455555555555555
Q ss_pred CCcccccCCccc
Q 045649 620 HNNLSGFIPRCF 631 (725)
Q Consensus 620 ~N~l~~~~p~~l 631 (725)
+|++++.+|..+
T Consensus 454 ~N~Ls~~~~~~L 465 (788)
T PRK15387 454 GNPLSERTLQAL 465 (788)
T ss_pred CCCCCchHHHHH
Confidence 555555544444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=3.7e-20 Score=206.03 Aligned_cols=222 Identities=23% Similarity=0.257 Sum_probs=164.8
Q ss_pred CCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeC
Q 045649 395 TELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNA 474 (725)
Q Consensus 395 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l 474 (725)
++|+.|++++|+++. +|.. .++|+.|++.+|.++.. |.. .++|+.|++++|+++. +|. ..++|+.|++
T Consensus 242 ~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~~L-p~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdL 309 (788)
T PRK15387 242 PELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLTHL-PAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSV 309 (788)
T ss_pred CCCcEEEecCCccCc-ccCc---ccccceeeccCCchhhh-hhc---hhhcCEEECcCCcccc-ccc---cccccceeEC
Confidence 445555555555442 2221 24566666666666532 221 2568888999998874 343 3478999999
Q ss_pred CCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCccccc
Q 045649 475 SMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSW 554 (725)
Q Consensus 475 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 554 (725)
++|.+++ +|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|.++.
T Consensus 310 S~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~- 376 (788)
T PRK15387 310 SDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS- 376 (788)
T ss_pred CCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-
Confidence 9999986 3442 2468899999999974 5532 2479999999999994 5543 3578899999999987
Q ss_pred chhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCC
Q 045649 555 IPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGM 634 (725)
Q Consensus 555 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 634 (725)
+|.. ..+|+.|++++|++++ +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|..+.++
T Consensus 377 LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L 444 (788)
T PRK15387 377 LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHL 444 (788)
T ss_pred Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhc
Confidence 5643 3579999999999985 5543 3579999999999976 5643 357889999999998 689999999
Q ss_pred CCCCeeeCcCCcccccCCC
Q 045649 635 HNLSHIDISYNELQGPIPN 653 (725)
Q Consensus 635 ~~L~~L~ls~N~l~g~ip~ 653 (725)
++|+.|++++|+++|.+|.
T Consensus 445 ~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 445 SSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred cCCCeEECCCCCCCchHHH
Confidence 9999999999999998775
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=2e-19 Score=201.80 Aligned_cols=246 Identities=27% Similarity=0.417 Sum_probs=124.3
Q ss_pred CCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEec
Q 045649 132 ELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLN 211 (725)
Q Consensus 132 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 211 (725)
+...|+++++.++ .+|..+. ++|+.|++++|.++ .+|..+. ++|++|++++|+++ .+|..+. ++|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 3455555555555 3444332 34555555555555 3443332 35555555555555 2343332 245555555
Q ss_pred CCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCccCCccC
Q 045649 212 NNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSI 291 (725)
Q Consensus 212 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 291 (725)
+|.+. .+|..+. ++|++|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++. +
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-C
Confidence 55553 3444332 35556666655555 2344332 35566666666555 2333322 345556666665552 3
Q ss_pred CccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCC
Q 045649 292 PLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLK 371 (725)
Q Consensus 292 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 371 (725)
|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+. .
T Consensus 320 P~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~ 388 (754)
T PRK15370 320 PETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--A 388 (754)
T ss_pred Ccccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--H
Confidence 33322 456666666666554 333332 45666666666665 3444332 456666666666653 343332 2
Q ss_pred cccEEecccCccCccCCccC----cCCCCCcEEeCCCCccc
Q 045649 372 SIFELDLCTNRLSGAIPHSI----SNLTELVLVNICENHFF 408 (725)
Q Consensus 372 ~L~~L~ls~n~l~~~~~~~~----~~l~~L~~L~l~~n~~~ 408 (725)
.|+.|++++|+++ .+|..+ ..++.+..+++.+|++.
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4666666666665 334332 23355666666666654
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=1.1e-18 Score=195.90 Aligned_cols=246 Identities=23% Similarity=0.331 Sum_probs=131.1
Q ss_pred ccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEcc
Q 045649 348 SLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFN 427 (725)
Q Consensus 348 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 427 (725)
+...|++++++++. +|..+. +.++.|++++|.++ .+|..+. .+|+.|++++|.++. +|..+. ++|+.|+++
T Consensus 179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECc
Confidence 45678888887774 455442 46888888888887 4555443 477778887777763 444332 356777777
Q ss_pred CCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecc
Q 045649 428 QNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEI 507 (725)
Q Consensus 428 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 507 (725)
+|.+.. +|..+. .+|+.|++++|+++. +|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|+++. +
T Consensus 250 ~N~L~~-LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRITE-LPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccCc-CChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence 776663 333332 356666666666653 343332 356666666665553 232221 245555555555542 3
Q ss_pred cccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCC
Q 045649 508 PVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLI 587 (725)
Q Consensus 508 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 587 (725)
|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++. +|..+. ++|++|+|++|+++ .+|..+..
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~~-- 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETLP--PTITTLDVSRNALT-NLPENLPA-- 388 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcCC-CCCHhHHH--
Confidence 3222 1355555555555553 343332 455555555555543 333332 35555555555554 23433332
Q ss_pred CCCEEeCCCCCCCccCCccc----cCCCCCCEEeCCCCccc
Q 045649 588 HLSELDLSYNFLDEEMPFQI----CNMKSLEKLNLCHNNLS 624 (725)
Q Consensus 588 ~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~L~~N~l~ 624 (725)
+|+.|++++|++++ +|..+ ..++.+..|++.+|+++
T Consensus 389 sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 45555555555542 22222 22344555555555554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=3.1e-20 Score=194.15 Aligned_cols=276 Identities=20% Similarity=0.201 Sum_probs=150.1
Q ss_pred eeecccCccc-cccchhhccCCcccEEecccCccCcc----CCccCcCCCCCcEEeCCCCcccC------cCCccccCCC
Q 045649 351 LLYLYNNGLY-GFVPEEIGYLKSIFELDLCTNRLSGA----IPHSISNLTELVLVNICENHFFG------PIPKSLRNLT 419 (725)
Q Consensus 351 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~------~~~~~l~~~~ 419 (725)
.|+|..+.++ +.....+..+..|++++++++.++.. ++..+...++++.++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4566666665 33444555566788888888877532 33344455566666666665542 1122334444
Q ss_pred CCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccC----CCCcccCCC-CCCc
Q 045649 420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYG----SIPTEIGDL-SKLQ 494 (725)
Q Consensus 420 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~l-~~L~ 494 (725)
+|++|++++|.+.+..+..+..+.. . ++|+.|++++|.+++ .+...+..+ ++|+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~--------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~ 140 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLR--------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhc--------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCce
Confidence 5555555554444333322222222 1 224444444444432 112223344 5666
Q ss_pred EEeCCCCeeeec----ccccccCCCCCCeeeCCCCcCCCC----CCcccCCCCCCcEEEccCCcccccc----hhhhhcc
Q 045649 495 VLDLSSNHIVGE----IPVQLGKLFSLTKLILNSNQLSGG----IPLELGSLTELQYIDLSANKLRSWI----PKSIANL 562 (725)
Q Consensus 495 ~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l 562 (725)
.|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++.. ...+..+
T Consensus 141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~ 220 (319)
T cd00116 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL 220 (319)
T ss_pred EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc
Confidence 666666665522 233445556677777777766532 2223344557777777777665432 2344556
Q ss_pred cCCCeeeCcCCcCCcCCchhhhc-----CCCCCEEeCCCCCCCc----cCCccccCCCCCCEEeCCCCccccc----CCc
Q 045649 563 LKLYYLNLSNNQFSQKIPIEVEK-----LIHLSELDLSYNFLDE----EMPFQICNMKSLEKLNLCHNNLSGF----IPR 629 (725)
Q Consensus 563 ~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~----~p~ 629 (725)
++|++|++++|.+++.....+.. .+.|++|++++|.++. .+...+..+++|+++++++|.++.. ...
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 67777777777776533322221 3677777777777762 2334455667778888888877744 333
Q ss_pred cccCC-CCCCeeeCcCCcc
Q 045649 630 CFEGM-HNLSHIDISYNEL 647 (725)
Q Consensus 630 ~l~~l-~~L~~L~ls~N~l 647 (725)
.+... +.|+++++.+|++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 301 SLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHhhcCCchhhcccCCCCC
Confidence 44444 5677777777764
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=7.9e-20 Score=191.05 Aligned_cols=277 Identities=23% Similarity=0.246 Sum_probs=175.3
Q ss_pred cccccCccCCC-cCccccCCCcccceeecccCccccc----cchhhccCCcccEEecccCccCc------cCCccCcCCC
Q 045649 327 ALGLHINQLNG-VIPASIGNLSSLRLLYLYNNGLYGF----VPEEIGYLKSIFELDLCTNRLSG------AIPHSISNLT 395 (725)
Q Consensus 327 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~------~~~~~~~~l~ 395 (725)
.|+|..+.+++ .....+..+.+|+.++++++.++.. ++..+...+.+++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 56778888873 3445566778899999999998543 45556677889999999998762 2334567788
Q ss_pred CCcEEeCCCCcccCcCCccccCCCC---CcEEEccCCcCccc----ccccccCC-CCCCEEECcCCccccccCccccCCC
Q 045649 396 ELVLVNICENHFFGPIPKSLRNLTS---LERVRFNQNNLSGK----VYEAFGYH-PNLTFLDFSQNNFYGEISFNWRNFP 467 (725)
Q Consensus 396 ~L~~L~l~~n~~~~~~~~~l~~~~~---L~~L~l~~n~l~~~----~~~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~~~ 467 (725)
+|+.+++++|.+.+..+..+..+.+ |++|++++|++++. +...+..+ ++|+.|++++|.+++....
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------ 155 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE------ 155 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH------
Confidence 9999999999998766655555544 88888888887742 22334445 6677777777766632111
Q ss_pred CCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeec----ccccccCCCCCCeeeCCCCcCCCC----CCcccCCCC
Q 045649 468 KLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGE----IPVQLGKLFSLTKLILNSNQLSGG----IPLELGSLT 539 (725)
Q Consensus 468 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~ 539 (725)
.++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+. +...+..++
T Consensus 156 --------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 156 --------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred --------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 1112233444555555555555421 223334445666666666665432 223345566
Q ss_pred CCcEEEccCCcccccchhhhhc-----ccCCCeeeCcCCcCCc----CCchhhhcCCCCCEEeCCCCCCCcc----CCcc
Q 045649 540 ELQYIDLSANKLRSWIPKSIAN-----LLKLYYLNLSNNQFSQ----KIPIEVEKLIHLSELDLSYNFLDEE----MPFQ 606 (725)
Q Consensus 540 ~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~ 606 (725)
+|++|++++|.+++.....+.. .+.|++|++++|.++. .+...+..+++|+++++++|.++.. ....
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 7777777777776533333322 2678888888887752 2334556667788888888888754 3333
Q ss_pred ccCC-CCCCEEeCCCCcc
Q 045649 607 ICNM-KSLEKLNLCHNNL 623 (725)
Q Consensus 607 l~~l-~~L~~L~L~~N~l 623 (725)
+... +.|+++++.+|++
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 302 LLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhhcCCchhhcccCCCCC
Confidence 3334 6788888877753
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=3e-19 Score=154.99 Aligned_cols=164 Identities=30% Similarity=0.550 Sum_probs=105.7
Q ss_pred cccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCC
Q 045649 102 AFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLI 181 (725)
Q Consensus 102 ~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 181 (725)
.+..+.+.+.|.||+|.++ .+|+.++.+.+|++|++++|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 4566677777788888775 45666777888888888888777 66777777888888887777776 677777777777
Q ss_pred CEEEccccccCC-CCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeec
Q 045649 182 NELALCHNNLHG-PIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYS 260 (725)
Q Consensus 182 ~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 260 (725)
+.|||.+|++.. .+|..|..++.|+.|+|++|.+ ..+|..++++++|+.|.+..|.+- ..|..++.++.|++|.+.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 777777777653 4555555556666666666555 445555555555555555555544 3445555555555555555
Q ss_pred ccccccCCccc
Q 045649 261 NSLSGHIPSVI 271 (725)
Q Consensus 261 n~l~~~~p~~l 271 (725)
|.++ .+|..+
T Consensus 183 nrl~-vlppel 192 (264)
T KOG0617|consen 183 NRLT-VLPPEL 192 (264)
T ss_pred ceee-ecChhh
Confidence 5544 334333
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.6e-18 Score=150.46 Aligned_cols=156 Identities=33% Similarity=0.518 Sum_probs=86.0
Q ss_pred CCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCE
Q 045649 128 GNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLAN 207 (725)
Q Consensus 128 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 207 (725)
..+.+.+.|.||+|+++ .+|+.++.+.+|+.|++.+|+++ .+|.+++.+++|+.|+++-|++. ..|..|+.++.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 35566667777777777 55666667777777777766665 55666666666666666655554 44555555555555
Q ss_pred EEecCCCCCc-cCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCcc
Q 045649 208 FYLNNNSLFD-SIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQ 286 (725)
Q Consensus 208 L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 286 (725)
|||.+|.+.. .+|..|..++.|+.|.+++|.+. .+|..++++++|+.|.+..|.+. .+|..++.++.|++|.+.+|+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 5555555432 23444444444555555555444 34444445555555555444444 444444444444444444444
Q ss_pred CC
Q 045649 287 LS 288 (725)
Q Consensus 287 l~ 288 (725)
++
T Consensus 185 l~ 186 (264)
T KOG0617|consen 185 LT 186 (264)
T ss_pred ee
Confidence 44
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.62 E-value=2.2e-15 Score=169.01 Aligned_cols=114 Identities=29% Similarity=0.485 Sum_probs=77.8
Q ss_pred CCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcC
Q 045649 565 LYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISY 644 (725)
Q Consensus 565 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 644 (725)
++.|+|++|.+.|.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|+++|.+|+.+..+++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666666766666666677777777777777777666666667777777777777777777777777777777777777
Q ss_pred CcccccCCCC-----CCcCceecccCCCCCCCCCCCCCCC
Q 045649 645 NELQGPIPNS-----TVFKDAHVEGNKGLCGNVNGFPSCK 679 (725)
Q Consensus 645 N~l~g~ip~~-----~~~~~~~~~gn~~lc~~~~~~~~c~ 679 (725)
|+++|.+|.. .....+.+.||+.+|+.|. ...|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~-l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG-LRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCC-CCCCc
Confidence 7777777653 1122447889999998763 45664
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.57 E-value=1.4e-14 Score=162.54 Aligned_cols=152 Identities=31% Similarity=0.503 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccceeeCCC-----CCEEEEEcCCCCCccc
Q 045649 23 SDSTKEALALLKWKRSLQNQNSSLLTSWTLYPANATNVPSYSKAKLSPCAWVGISCNQA-----ERVISINLSSMGLNGT 97 (725)
Q Consensus 23 ~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~w~gv~c~~~-----~~v~~l~l~~~~l~~~ 97 (725)
...++|..||+++|+++..+. ..+|. +..+.| .+|.|.||.|... .+|+.|+|+++.+.|.
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~---~~~W~----g~~C~p-------~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ 433 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPL---RFGWN----GDPCVP-------QQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGF 433 (623)
T ss_pred ccCchHHHHHHHHHHhcCCcc---cCCCC----CCCCCC-------cccccccceeeccCCCCceEEEEEECCCCCcccc
Confidence 456789999999999986432 24785 211000 1137999999521 1366667766666666
Q ss_pred cCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCC
Q 045649 98 LQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQ 177 (725)
Q Consensus 98 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 177 (725)
++ ..+..+++|++|+|++|.+.|.+|..++.+++|++|+|++|+++|.+|+.++++++|++|++++|.++|.+|..++.
T Consensus 434 ip-~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 434 IP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CC-HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 65 45666666666666666666666666666666666666666666666666666666666666666666555555543
Q ss_pred C-CCCCEEEcccc
Q 045649 178 L-NLINELALCHN 189 (725)
Q Consensus 178 l-~~L~~L~Ls~n 189 (725)
. .++..+++.+|
T Consensus 513 ~~~~~~~l~~~~N 525 (623)
T PLN03150 513 RLLHRASFNFTDN 525 (623)
T ss_pred ccccCceEEecCC
Confidence 2 23444444444
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=8.5e-13 Score=135.92 Aligned_cols=191 Identities=32% Similarity=0.448 Sum_probs=121.5
Q ss_pred CCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCC
Q 045649 445 LTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNS 524 (725)
Q Consensus 445 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 524 (725)
-...|++.|.+. .+|..+..|..|+.+.+..|.+. .+|..+.++..|+++||+.|+++ ..|..+..|+ |+.|.+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 345566666654 44555566666666666666554 45666677777777777777765 5566666665 77777777
Q ss_pred CcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCC
Q 045649 525 NQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMP 604 (725)
Q Consensus 525 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 604 (725)
|+++ .+|+.++....|..||.+.|.+.. +|..++++.+|+.|.+..|++. ..|.++..| .|..||+|+|+++ .+|
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLP 227 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecc
Confidence 7776 566666666777777777777765 5666777777777777777775 455566644 4666777777773 456
Q ss_pred ccccCCCCCCEEeCCCCcccccCCcccc---CCCCCCeeeCcCC
Q 045649 605 FQICNMKSLEKLNLCHNNLSGFIPRCFE---GMHNLSHIDISYN 645 (725)
Q Consensus 605 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~---~l~~L~~L~ls~N 645 (725)
-.|.+|+.|++|-|.+|.+. ..|..+. ..+=.++|++.-+
T Consensus 228 v~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 66777777777777777776 3343322 1223445555555
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=3.9e-11 Score=129.09 Aligned_cols=154 Identities=38% Similarity=0.534 Sum_probs=81.4
Q ss_pred CCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCc
Q 045649 492 KLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLS 571 (725)
Q Consensus 492 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 571 (725)
+|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|...+..+.|+.|++++|++.. +|........|++|.++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcccc-Cchhhhhhhhhhhhhhc
Confidence 5555555555554 33344555555555666555555 333333345555666666666555 33333344445666666
Q ss_pred CCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccC
Q 045649 572 NNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPI 651 (725)
Q Consensus 572 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 651 (725)
+|.+. .++..+..+..+..+.+.+|++... +..++.+++++.|++++|.++...+ +..+.+++.|++++|.+....
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred CCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence 66432 3444555555555555666555332 3445555566666666666653322 555566666666666555443
Q ss_pred C
Q 045649 652 P 652 (725)
Q Consensus 652 p 652 (725)
|
T Consensus 294 ~ 294 (394)
T COG4886 294 P 294 (394)
T ss_pred h
Confidence 3
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=6.2e-11 Score=127.53 Aligned_cols=195 Identities=39% Similarity=0.546 Sum_probs=91.3
Q ss_pred EEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCC-CCCEEEccCCcCCcCCCcccCCCCCCCEEEcccc
Q 045649 111 RLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLN-QLRSLYFDVNQLHGSIPPEIGQLNLINELALCHN 189 (725)
Q Consensus 111 ~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n 189 (725)
.++++.+.+...+ ..+..++.++.|++.+|.++ .+|.....+. +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3455544442221 12334455555555555555 3444444443 5555555555554 33344555555555555555
Q ss_pred ccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCc
Q 045649 190 NLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPS 269 (725)
Q Consensus 190 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 269 (725)
++. .+|...+..++|+.|++++|++ ..+|..+.....|++|++++|.+. ..+..+..+.++..+.+.+|++. ..+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 555 2333333455555555555555 223333333334555555555322 22334444455555555444443 2234
Q ss_pred cccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCC
Q 045649 270 VIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGF 314 (725)
Q Consensus 270 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 314 (725)
.++.+++++.|++++|.++.. +. ++.+.+++.|+++++.+...
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred hhccccccceecccccccccc-cc-ccccCccCEEeccCcccccc
Confidence 444455555555555555422 21 44445555555555544433
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=1e-12 Score=135.28 Aligned_cols=170 Identities=32% Similarity=0.510 Sum_probs=85.2
Q ss_pred CEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCC
Q 045649 134 QYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNN 213 (725)
Q Consensus 134 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 213 (725)
...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+.++..|++++|+.|+++ .+|..++.|+ |+.|-+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 34444445444 44444444444444445444443 44445555555555555555544 3444444432 455555555
Q ss_pred CCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCccCCccCCc
Q 045649 214 SLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPL 293 (725)
Q Consensus 214 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 293 (725)
++ +.+|+.++..+.|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+. .-.|..||+|.|++. .+|.
T Consensus 154 kl-~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv 228 (722)
T KOG0532|consen 154 KL-TSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPV 228 (722)
T ss_pred cc-ccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecch
Confidence 54 344445555555555555555554 33445555555555555555554 4444444 223555555555555 4555
Q ss_pred cccCCCCCCEEEccCCcCC
Q 045649 294 SLGNLSSLTVMSLFSNSLS 312 (725)
Q Consensus 294 ~l~~l~~L~~L~L~~n~l~ 312 (725)
.|.+++.|++|.|.+|.+.
T Consensus 229 ~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhheeeeeccCCCC
Confidence 5555555555555555554
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=2.2e-12 Score=125.60 Aligned_cols=240 Identities=20% Similarity=0.205 Sum_probs=120.5
Q ss_pred ccCCCCCCEEECCCCCCCCC----CccccCCCCCCCEEeCCCC---CCCccCCccCcCCCCCCEEEccCCcCCcCCCccc
Q 045649 103 FSSFPHLVRLNLSFNIVFGT----IPPQVGNLSELQYLDLGSN---QLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEI 175 (725)
Q Consensus 103 l~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~Ls~n---~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 175 (725)
+..+..++.++||+|.|... +...+.+-+.|+..++|+- +....+|+.+. .+.+++
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~-----------------~l~~aL 88 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALK-----------------MLSKAL 88 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHH-----------------HHHHHH
Confidence 44555666666666666332 3334555566666666543 11112332210 001122
Q ss_pred CCCCCCCEEEccccccCCCCcc----ccCCCCCCCEEEecCCCCCcc-------------CccccCCCCCCCEEEcccCc
Q 045649 176 GQLNLINELALCHNNLHGPIPP----SLGNLSNLANFYLNNNSLFDS-------------IPLVLGNLKSLSTLDLSKNQ 238 (725)
Q Consensus 176 ~~l~~L~~L~Ls~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~-------------~p~~l~~l~~L~~L~Ls~n~ 238 (725)
..+++|++|+||.|-+....+. -+..+..|++|+|.+|.+... .....++-+.|+++..++|+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 2333444444444443322221 123455566666665554211 11123344677777777777
Q ss_pred CcccC----CcCccCCCCCceEEeeccccccc----CCccccCCCCCCEEECcCccCCcc----CCccccCCCCCCEEEc
Q 045649 239 LSGLI----PFSLGNLSNLGILYLYSNSLSGH----IPSVIGNLKSLLQLDLSENQLSGS----IPLSLGNLSSLTVMSL 306 (725)
Q Consensus 239 l~~~~----~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L 306 (725)
+.... ...|...+.|+.+.++.|.+... +...+..+++|+.|||.+|.++.. +...+..+++|+++++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 65321 22345556777777777765421 223456677777777777766532 2334555667777777
Q ss_pred cCCcCCCCCCccc-----ccCCCCCcccccCccCCCc----CccccCCCcccceeecccCcc
Q 045649 307 FSNSLSGFIPPIL-----GNLKSLSALGLHINQLNGV----IPASIGNLSSLRLLYLYNNGL 359 (725)
Q Consensus 307 ~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l 359 (725)
++|.+.......+ ...++|+++.+.+|.++.. +...+...+.|..|++++|.+
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 7776654332222 1245666666666665531 112233455566666666655
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=6.7e-11 Score=108.65 Aligned_cols=124 Identities=30% Similarity=0.366 Sum_probs=39.5
Q ss_pred CCCCCCeeeCCCCcCCCCCCcccC-CCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhh-hcCCCCC
Q 045649 513 KLFSLTKLILNSNQLSGGIPLELG-SLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEV-EKLIHLS 590 (725)
Q Consensus 513 ~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~ 590 (725)
++..+++|+|++|.++. + +.++ .+.+|+.|++++|.++.+ +.+..++.|++|++++|+++. +...+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 34456666666666652 2 2333 456677777777776664 346666777777777777764 33333 3567777
Q ss_pred EEeCCCCCCCccCC-ccccCCCCCCEEeCCCCcccccCCc----cccCCCCCCeeeC
Q 045649 591 ELDLSYNFLDEEMP-FQICNMKSLEKLNLCHNNLSGFIPR----CFEGMHNLSHIDI 642 (725)
Q Consensus 591 ~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~l 642 (725)
+|++++|++..... ..+..+++|++|++.+|++... +. .+..+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 77777777654322 3455667777777777776633 22 2345666776654
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=2.8e-11 Score=115.11 Aligned_cols=131 Identities=24% Similarity=0.286 Sum_probs=81.6
Q ss_pred CCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeC
Q 045649 515 FSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDL 594 (725)
Q Consensus 515 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 594 (725)
..|+.+|+++|.++ .+.+++.-.+.++.|++|+|.+... ..+..+++|+.||||+|.++ .+-.+-..+.+++.|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 44666666666665 4555556666677777777766653 23666667777777777665 23333445566677777
Q ss_pred CCCCCCccCCccccCCCCCCEEeCCCCcccccC-CccccCCCCCCeeeCcCCcccccC
Q 045649 595 SYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFI-PRCFEGMHNLSHIDISYNELQGPI 651 (725)
Q Consensus 595 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~i 651 (725)
+.|.+... ..++.+-+|..||+++|++...- -..+++++.|+++.+.+|++.+..
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 77766332 23566667777777777765332 235667777777777777777644
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=6.1e-11 Score=112.85 Aligned_cols=133 Identities=31% Similarity=0.305 Sum_probs=78.3
Q ss_pred cCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCccCCccCCccccCCCCCC
Q 045649 223 LGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLT 302 (725)
Q Consensus 223 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 302 (725)
+...+.|+++|+++|.|+ .+.+++.-.|+++.|++++|.+... ..+..+++|+.||||+|.++ .+..+-.++.+++
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 334455666667666666 3455555566666666666666522 22556666666676666665 2333444555666
Q ss_pred EEEccCCcCCCCCCcccccCCCCCcccccCccCCCcC-ccccCCCcccceeecccCcccc
Q 045649 303 VMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVI-PASIGNLSSLRLLYLYNNGLYG 361 (725)
Q Consensus 303 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~ 361 (725)
.|.++.|.+... ..+..+-+|..||+++|++.... -..++++|.|+.+.+.+|.+.+
T Consensus 356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 666666665432 33555566666667666665321 1345666777777777776654
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=5.1e-10 Score=102.82 Aligned_cols=128 Identities=33% Similarity=0.289 Sum_probs=50.7
Q ss_pred CCCCCCcEEeCCCCeeeeccccccc-CCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCC
Q 045649 488 GDLSKLQVLDLSSNHIVGEIPVQLG-KLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLY 566 (725)
Q Consensus 488 ~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 566 (725)
.+..++++|+|++|.|+.+ ..++ .+.+|+.|++++|.++.. +.+..++.|++|++++|+|+.+.+.....+++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3445678888888887643 2344 467888888888888743 2467788999999999999885332224688999
Q ss_pred eeeCcCCcCCcCC-chhhhcCCCCCEEeCCCCCCCccCC---ccccCCCCCCEEeCC
Q 045649 567 YLNLSNNQFSQKI-PIEVEKLIHLSELDLSYNFLDEEMP---FQICNMKSLEKLNLC 619 (725)
Q Consensus 567 ~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~L~ 619 (725)
+|++++|++.... -..+..+++|+.|+|.+|++....- ..+..+|+|+.||-.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 9999999986532 2557788999999999999875422 245678899988753
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.00 E-value=6.6e-11 Score=115.49 Aligned_cols=90 Identities=24% Similarity=0.392 Sum_probs=40.2
Q ss_pred hhhcccCCCeeeCcCCcCCcC----CchhhhcCCCCCEEeCCCCCCCccCCccc-----cCCCCCCEEeCCCCccccc--
Q 045649 558 SIANLLKLYYLNLSNNQFSQK----IPIEVEKLIHLSELDLSYNFLDEEMPFQI-----CNMKSLEKLNLCHNNLSGF-- 626 (725)
Q Consensus 558 ~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~-- 626 (725)
.+..+++|+.|||.+|-++.. +...+..+++|++|++++|.+.......+ ...++|+.|.+.+|.++..
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~ 287 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA 287 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence 344444444444444444321 12223344445555555554443222221 1235555555555555422
Q ss_pred --CCccccCCCCCCeeeCcCCcc
Q 045649 627 --IPRCFEGMHNLSHIDISYNEL 647 (725)
Q Consensus 627 --~p~~l~~l~~L~~L~ls~N~l 647 (725)
+...+...+.|..|++++|.+
T Consensus 288 ~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 288 LALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhcchhhHHhcCCcccc
Confidence 222333455566666666665
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.98 E-value=4.3e-10 Score=129.10 Aligned_cols=276 Identities=25% Similarity=0.265 Sum_probs=149.9
Q ss_pred ccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCC--CCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCC
Q 045649 103 FSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQ--LTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNL 180 (725)
Q Consensus 103 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 180 (725)
..+....|...+-+|.+.. ++.. ..+++|++|-+..|. +....+..|..++.|++|||++|.--+.+|+.++++-+
T Consensus 519 ~~~~~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred ccchhheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 3444556666666665432 2222 234567777777765 33222334666777777777777666677777777777
Q ss_pred CCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCc--ccCCcCccCCCCCceEEe
Q 045649 181 INELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLS--GLIPFSLGNLSNLGILYL 258 (725)
Q Consensus 181 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~L 258 (725)
||+|+++++.+. .+|..+.++.+|.+|++..+.....+|.....+++||+|.+...... ...-..+..+.+|+.+..
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 777777777776 67777777777777777776655555555566777888777654321 122223344455555544
Q ss_pred ecccccccCCccccCCCCCC----EEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCccccc------CCCCCcc
Q 045649 259 YSNSLSGHIPSVIGNLKSLL----QLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGN------LKSLSAL 328 (725)
Q Consensus 259 ~~n~l~~~~p~~l~~l~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L 328 (725)
..... .+-..+..+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+.......... ++++..+
T Consensus 676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV 752 (889)
T ss_pred ecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence 33222 0111122222222 2222222222 34456777888888888888776433222211 1122222
Q ss_pred cccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecccCccCc
Q 045649 329 GLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSG 385 (725)
Q Consensus 329 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 385 (725)
...++... ..+.+....++|+.|.+..+.....+......+..++.+.+..+.+.+
T Consensus 753 ~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 753 SILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred Hhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 22222111 122333445788888888776655544444445555554455554443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=8.2e-11 Score=117.94 Aligned_cols=136 Identities=26% Similarity=0.221 Sum_probs=61.4
Q ss_pred CCCCcEEeCCCCeeee-cccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccc-hhhhhcccCCCe
Q 045649 490 LSKLQVLDLSSNHIVG-EIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWI-PKSIANLLKLYY 567 (725)
Q Consensus 490 l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~ 567 (725)
++.|+.|.+++|.++- .+......+|+|+.|++..|...........-+..|+.|||++|++-... -...+.++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 4455555555555541 12222334555555555555322222222333445555555555554321 023344555555
Q ss_pred eeCcCCcCCcC-Cchh-----hhcCCCCCEEeCCCCCCCccC-CccccCCCCCCEEeCCCCcccc
Q 045649 568 LNLSNNQFSQK-IPIE-----VEKLIHLSELDLSYNFLDEEM-PFQICNMKSLEKLNLCHNNLSG 625 (725)
Q Consensus 568 L~Ls~n~l~~~-~p~~-----~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~ 625 (725)
|+++.+.+... .|.. ...+++|++|++++|++.... -..+..+++|+.|.+..|.++.
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 55555555432 1111 233455666666666553211 1123344555555555555543
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=6e-10 Score=127.93 Aligned_cols=274 Identities=22% Similarity=0.231 Sum_probs=170.9
Q ss_pred CCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCc--CCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCC
Q 045649 128 GNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQ--LHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNL 205 (725)
Q Consensus 128 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~--l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 205 (725)
......+...+-+|.+. .++... .+++|++|-+..|. +....+..|..++.|++|||++|.--+.+|..++.+-+|
T Consensus 520 ~~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred cchhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 34467788888888776 344443 45589999999986 443444457889999999999988777999999999999
Q ss_pred CEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeeccccc--ccCCccccCCCCCCEEECc
Q 045649 206 ANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLS--GHIPSVIGNLKSLLQLDLS 283 (725)
Q Consensus 206 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls 283 (725)
++|++++..+. .+|..+++++.|.+|++..+.....+|.....+++|++|.+..-... ...-..+.++.+|+.+...
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 99999999984 78999999999999999998766666777777999999999876422 2222334555566655553
Q ss_pred CccCCccCCccccCCCCCC----EEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCC------Ccccceee
Q 045649 284 ENQLSGSIPLSLGNLSSLT----VMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGN------LSSLRLLY 353 (725)
Q Consensus 284 ~n~l~~~~p~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~ 353 (725)
.... .+-..+..++.|. .+.+..+... ..+..+..+.+|+.|.+.++............ ++++..+.
T Consensus 677 ~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~ 753 (889)
T KOG4658|consen 677 ISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS 753 (889)
T ss_pred cchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence 3322 1111222233332 2332222222 23445677888888888888776432222111 22333333
Q ss_pred cccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCccc
Q 045649 354 LYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFF 408 (725)
Q Consensus 354 L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 408 (725)
..++... ..+.+....++|+.|.+..+.....+.+....+..++.+.+..+.+.
T Consensus 754 ~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 754 ILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred hhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 3333221 12223334567888888777655444433333444443333333333
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.5e-10 Score=116.17 Aligned_cols=211 Identities=24% Similarity=0.248 Sum_probs=141.3
Q ss_pred cCCCCCCEEECCCCCCCCCCc-cccCCCCCCCEEeCCCCCCCccCC--ccCcCCCCCCEEEccCCcCCcCCCccc-CCCC
Q 045649 104 SSFPHLVRLNLSFNIVFGTIP-PQVGNLSELQYLDLGSNQLTGVIP--QEIGHLNQLRSLYFDVNQLHGSIPPEI-GQLN 179 (725)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~ 179 (725)
.++..|+...|.+..+..... .....|++++.||||.|-+....| .-...+++|+.|+++.|++........ ..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 467788888887776532211 345678888888888887764332 234578888888888888763332222 3567
Q ss_pred CCCEEEccccccCCC-CccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccC-CcCccCCCCCceEE
Q 045649 180 LINELALCHNNLHGP-IPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLI-PFSLGNLSNLGILY 257 (725)
Q Consensus 180 ~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~ 257 (725)
+|+.|.++.|.++.. +...+..+|+|+.|+|..|............+..|+.|||++|++-... -...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 888888888888732 2223456788999999888533333333445678899999988876432 13457788888888
Q ss_pred eeccccccc-CCcc-----ccCCCCCCEEECcCccCCcc-CCccccCCCCCCEEEccCCcCCCC
Q 045649 258 LYSNSLSGH-IPSV-----IGNLKSLLQLDLSENQLSGS-IPLSLGNLSSLTVMSLFSNSLSGF 314 (725)
Q Consensus 258 L~~n~l~~~-~p~~-----l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~ 314 (725)
++.+.+... .|+. ...+++|++|++..|++... .-..+..+.+|+.|.+..|.++..
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 888887642 2333 35678999999999988521 112344567788888888887644
No 39
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.84 E-value=3.8e-09 Score=72.68 Aligned_cols=41 Identities=39% Similarity=0.981 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCCC-CCCCCCcCCCCCCCCcccceeeC
Q 045649 26 TKEALALLKWKRSLQNQNSSLLTSWTLYPAN-ATNVPSYSKAKLSPCAWVGISCN 79 (725)
Q Consensus 26 ~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~c~w~gv~c~ 79 (725)
++|++||++||+++..+|.+.+.+|+ .+ .. +||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~---~~~~~----------~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWN---PSSDS----------DPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT-----TT--S-----------CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCC---CcCCC----------CCeeeccEEeC
Confidence 67999999999999977778999997 12 25 89999999995
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=1.9e-09 Score=81.31 Aligned_cols=60 Identities=42% Similarity=0.594 Sum_probs=38.0
Q ss_pred CCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcc
Q 045649 588 HLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL 647 (725)
Q Consensus 588 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 647 (725)
+|++|++++|+++...+..|.++++|++|++++|.++...|..|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666655556666666666666666666666666666666666666666653
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=5.9e-10 Score=120.06 Aligned_cols=224 Identities=28% Similarity=0.288 Sum_probs=104.6
Q ss_pred CcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCC
Q 045649 151 IGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLS 230 (725)
Q Consensus 151 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 230 (725)
+..+.+|+.|++.+|.+... ...+..+++|++|++++|.|+... .+..++.|+.|++++|.+... ..+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhh
Confidence 34444444444444444421 111344455555555555544321 233444455555555555322 1233355555
Q ss_pred EEEcccCcCcccCC-cCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCccCCccCCccccCCCC--CCEEEcc
Q 045649 231 TLDLSKNQLSGLIP-FSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSS--LTVMSLF 307 (725)
Q Consensus 231 ~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~L~ 307 (725)
.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.++..- .+..+.. |+.+++.
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLS 240 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcc
Confidence 56666655553322 1 34555566666666655411 22333334444455555554321 1222222 5666666
Q ss_pred CCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccc---cchh-hccCCcccEEecccCcc
Q 045649 308 SNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGF---VPEE-IGYLKSIFELDLCTNRL 383 (725)
Q Consensus 308 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~-l~~l~~L~~L~ls~n~l 383 (725)
+|.+... +..+..+..+..+++..|++... ..+...+.+..+....+.+... .... ....+.+..+.+..|..
T Consensus 241 ~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 241 GNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred cCccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 6665522 13455556666666666666543 1233344555555555554321 1111 23345666666666666
Q ss_pred CccC
Q 045649 384 SGAI 387 (725)
Q Consensus 384 ~~~~ 387 (725)
....
T Consensus 318 ~~~~ 321 (414)
T KOG0531|consen 318 RKIS 321 (414)
T ss_pred cccc
Confidence 5433
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=3.4e-09 Score=79.93 Aligned_cols=59 Identities=37% Similarity=0.451 Sum_probs=30.2
Q ss_pred CCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCc
Q 045649 564 KLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNN 622 (725)
Q Consensus 564 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 622 (725)
+|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555544444445555555555555555555555555555555555555554
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.74 E-value=1.5e-09 Score=116.82 Aligned_cols=129 Identities=28% Similarity=0.322 Sum_probs=68.2
Q ss_pred CCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEE
Q 045649 153 HLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTL 232 (725)
Q Consensus 153 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 232 (725)
.+..++.+++..|.+.. +-..+..+++|+.|++.+|.+... ...+..+++|++|++++|.++...+ +..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhh
Confidence 34445555555555542 223355666777777777766632 2224556666666666666644322 4445556666
Q ss_pred EcccCcCcccCCcCccCCCCCceEEeecccccccCCcc-ccCCCCCCEEECcCccCC
Q 045649 233 DLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSV-IGNLKSLLQLDLSENQLS 288 (725)
Q Consensus 233 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~ 288 (725)
++++|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIR 199 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchh
Confidence 6666666533 334445566666666665552222 1 344555555555555553
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.54 E-value=5.8e-09 Score=110.89 Aligned_cols=156 Identities=34% Similarity=0.444 Sum_probs=88.0
Q ss_pred CcccCCCCCCcEEeCCCCeeeecccccccCC-CCCCeeeCCCCcCC----------CCCCcccCCCCCCcEEEccCCccc
Q 045649 484 PTEIGDLSKLQVLDLSSNHIVGEIPVQLGKL-FSLTKLILNSNQLS----------GGIPLELGSLTELQYIDLSANKLR 552 (725)
Q Consensus 484 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~----------~~~~~~l~~l~~L~~L~Ls~n~l~ 552 (725)
|-.+..+.+|+.|.+.+|.+... ..+..+ ..|+.|. .+|.+. |.+... ..+-.|.+.+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns-~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNS-PVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccc-hhhhhHhhhhcchhhHH
Confidence 55667778899999999887521 111110 1223221 112111 011000 01234556666666665
Q ss_pred ccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCcccc
Q 045649 553 SWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFE 632 (725)
Q Consensus 553 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 632 (725)
. ...++.-++.|+.|||++|++... ..+..|+.|++|||++|.+....--....+. |+.|.+++|.++.. -.+.
T Consensus 178 ~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 178 L-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred h-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHH
Confidence 4 445666667777777777777543 2566677777777777777544333333444 77777777776644 3456
Q ss_pred CCCCCCeeeCcCCcccc
Q 045649 633 GMHNLSHIDISYNELQG 649 (725)
Q Consensus 633 ~l~~L~~L~ls~N~l~g 649 (725)
++.+|+.||++||-+.+
T Consensus 252 ~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred hhhhhhccchhHhhhhc
Confidence 67777777777776654
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.44 E-value=4.2e-09 Score=111.95 Aligned_cols=181 Identities=23% Similarity=0.176 Sum_probs=124.0
Q ss_pred CccccCCCCCcEEeCCCccccCCCCcccCCC-CCCcEEeCCCCeee---ecccccccC------CCCCCeeeCCCCcCCC
Q 045649 460 SFNWRNFPKLCTFNASMNNIYGSIPTEIGDL-SKLQVLDLSSNHIV---GEIPVQLGK------LFSLTKLILNSNQLSG 529 (725)
Q Consensus 460 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~---~~~~~~~~~------l~~L~~L~Ls~n~l~~ 529 (725)
|-.+..|.+|+.|.+.++.+... .++..+ ..|+.|--. |.+. ..+....+. ...|...+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 55677899999999999988641 111111 223333222 1111 011111111 124777788888887
Q ss_pred CCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccC
Q 045649 530 GIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICN 609 (725)
Q Consensus 530 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 609 (725)
....++.-++.|+.|+|++|+++.. +.+..|++|++|||++|.+....--...++. |+.|++++|.++... .+.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~--gie~ 252 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR--GIEN 252 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh--hHHh
Confidence 5667778888999999999999885 4788899999999999999743333344444 999999999887653 4778
Q ss_pred CCCCCEEeCCCCcccccCC-ccccCCCCCCeeeCcCCcccc
Q 045649 610 MKSLEKLNLCHNNLSGFIP-RCFEGMHNLSHIDISYNELQG 649 (725)
Q Consensus 610 l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~g 649 (725)
+++|+.||+++|-+++.-. ..+..+.+|+.|++.+|++.+
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 9999999999998876522 224456778899999999865
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.34 E-value=3e-08 Score=83.92 Aligned_cols=135 Identities=27% Similarity=0.229 Sum_probs=80.9
Q ss_pred CCCeeeCCCCcCCCCCCcc---cCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEE
Q 045649 516 SLTKLILNSNQLSGGIPLE---LGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSEL 592 (725)
Q Consensus 516 ~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 592 (725)
.+..++|++|++. .+++. +.....|...+|++|.+....+..-...+.++.|++++|.++ .+|.++..++.|+.|
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 3455666666554 23322 333445666677777776643333344456777777777776 567777777777777
Q ss_pred eCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCCC
Q 045649 593 DLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS 654 (725)
Q Consensus 593 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 654 (725)
+++.|++.. .|+.+..+.++-.|+..+|.+. .+|..+-.-+.....++.++++.+..|..
T Consensus 106 Nl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 106 NLRFNPLNA-EPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred ccccCcccc-chHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence 777777754 3445555777777777777766 44433322233334455666777666654
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.21 E-value=1.1e-07 Score=89.76 Aligned_cols=218 Identities=18% Similarity=0.133 Sum_probs=109.6
Q ss_pred ccCCCCCCEEECCCCCCCCCCc----cccCCCCCCCEEeCCCCCCC---ccCCccCcCCCCCCEEEccCCcCCcCCCccc
Q 045649 103 FSSFPHLVRLNLSFNIVFGTIP----PQVGNLSELQYLDLGSNQLT---GVIPQEIGHLNQLRSLYFDVNQLHGSIPPEI 175 (725)
Q Consensus 103 l~~l~~L~~L~Ls~n~~~~~~~----~~~~~l~~L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 175 (725)
+..+..+..+|||+|.|..... ..+.+-++|+..+++.-... ..+|+.+. .+-+++
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~-----------------~Ll~aL 88 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLV-----------------MLLKAL 88 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHH-----------------HHHHHH
Confidence 3446667777777777654422 23445566676666643111 11121110 001123
Q ss_pred CCCCCCCEEEccccccCCCCccc----cCCCCCCCEEEecCCCCCcc----Cc---------cccCCCCCCCEEEcccCc
Q 045649 176 GQLNLINELALCHNNLHGPIPPS----LGNLSNLANFYLNNNSLFDS----IP---------LVLGNLKSLSTLDLSKNQ 238 (725)
Q Consensus 176 ~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~----~p---------~~l~~l~~L~~L~Ls~n~ 238 (725)
-+|++|+..+||.|.+....|+. ++.-+.|++|.+++|.+... +. .-..+-|.|++.....|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 34444444444444444333322 23345566666666554111 11 112345678888888777
Q ss_pred CcccCC----cCccCCCCCceEEeecccccccC-----CccccCCCCCCEEECcCccCCcc----CCccccCCCCCCEEE
Q 045649 239 LSGLIP----FSLGNLSNLGILYLYSNSLSGHI-----PSVIGNLKSLLQLDLSENQLSGS----IPLSLGNLSSLTVMS 305 (725)
Q Consensus 239 l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ 305 (725)
+..... ..+..-.+|+++.+..|.|.-.. -..+..+.+|+.||+..|.++.. +...+..++.|+.|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 653211 11222246777778777665221 11234567778888887776532 223344556677777
Q ss_pred ccCCcCCCCCCccc------ccCCCCCcccccCccCCC
Q 045649 306 LFSNSLSGFIPPIL------GNLKSLSALGLHINQLNG 337 (725)
Q Consensus 306 L~~n~l~~~~~~~l------~~l~~L~~L~L~~n~l~~ 337 (725)
+..|-++......+ ...++|..|...+|...+
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 77776654322221 123566666666666554
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=8e-09 Score=98.71 Aligned_cols=84 Identities=21% Similarity=0.225 Sum_probs=41.4
Q ss_pred CCCEEeCCCCCCCcc-CCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccc-cCCC-CccccCCCCCCCEE
Q 045649 132 ELQYLDLGSNQLTGV-IPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNN-LHGP-IPPSLGNLSNLANF 208 (725)
Q Consensus 132 ~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~~L 208 (725)
.|++||||...++.. ...-+..|.+|+.|.+.++++...+...+.+-.+|+.|+++.++ ++.. ..--+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666555421 11223455566666666665555555555555556666655543 1110 11123445555555
Q ss_pred EecCCCC
Q 045649 209 YLNNNSL 215 (725)
Q Consensus 209 ~L~~n~l 215 (725)
+++.|.+
T Consensus 266 NlsWc~l 272 (419)
T KOG2120|consen 266 NLSWCFL 272 (419)
T ss_pred CchHhhc
Confidence 5555544
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=1.5e-07 Score=79.68 Aligned_cols=138 Identities=23% Similarity=0.254 Sum_probs=89.2
Q ss_pred CcEEeCCCCeeee--cccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeC
Q 045649 493 LQVLDLSSNHIVG--EIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNL 570 (725)
Q Consensus 493 L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 570 (725)
+..+||++|++.. ..+..+.....|+..+|++|.+....+..-..++..+.+++++|.++. +|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhccc
Confidence 4566777776531 122334445567777888888874333333445578888888888877 6777888888888888
Q ss_pred cCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccC
Q 045649 571 SNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEG 633 (725)
Q Consensus 571 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 633 (725)
+.|.+. ..|..+..+.++-.|+..+|.+.. +|..+-.-+..-..++.++.+.+.-+..++.
T Consensus 108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgnepl~~~~~~klqa 168 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGNEPLGDETKKKLQA 168 (177)
T ss_pred ccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcCCcccccCcccccc
Confidence 888886 556777778888888888887744 3333322233334455677777666554443
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=7.4e-07 Score=85.54 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=28.5
Q ss_pred CcccceeecccCccccc--cchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCc
Q 045649 346 LSSLRLLYLYNNGLYGF--VPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENH 406 (725)
Q Consensus 346 l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 406 (725)
++.++.++|.+|.++.. +-..+.++|.|+.|+++.|++...+...-....+|+.+-+.+..
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG 132 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC
Confidence 34566666666665532 22233445556666666665553332211233444444444433
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=3.7e-08 Score=94.26 Aligned_cols=201 Identities=20% Similarity=0.163 Sum_probs=136.7
Q ss_pred CEEEEEcCCCCCccc-cCcccccCC-CCCCEEECCCCCCCCC-CccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCE
Q 045649 83 RVISINLSSMGLNGT-LQEFAFSSF-PHLVRLNLSFNIVFGT-IPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRS 159 (725)
Q Consensus 83 ~v~~l~l~~~~l~~~-~~~~~l~~l-~~L~~L~Ls~n~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 159 (725)
.|..+.+...-.... +. +.+.-+ +.|++||||...++.. +-.-++.|.+|+.|.+.++++.+.+-..+++-.+|+.
T Consensus 160 gV~v~Rlar~~~~~prla-e~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 160 GVIVFRLARSFMDQPRLA-EHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR 238 (419)
T ss_pred CeEEEEcchhhhcCchhh-hhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence 577777764333221 11 112222 3599999998877533 3334678999999999999999888888999999999
Q ss_pred EEccCCcCCcCC--CcccCCCCCCCEEEccccccCCCCcccc-C-CCCCCCEEEecCCCCC---ccCccccCCCCCCCEE
Q 045649 160 LYFDVNQLHGSI--PPEIGQLNLINELALCHNNLHGPIPPSL-G-NLSNLANFYLNNNSLF---DSIPLVLGNLKSLSTL 232 (725)
Q Consensus 160 L~l~~n~l~~~~--p~~~~~l~~L~~L~Ls~n~l~~~~~~~l-~-~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L 232 (725)
|+++.+.--... .--+.+|+.|..|+++-+.+.......+ . --++|+.|+++++.-. ..+..-...+++|.+|
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 999987522111 1125789999999999987764322111 1 1257888999887421 1111223578999999
Q ss_pred EcccCc-CcccCCcCccCCCCCceEEeecccccccCCcc---ccCCCCCCEEECcCcc
Q 045649 233 DLSKNQ-LSGLIPFSLGNLSNLGILYLYSNSLSGHIPSV---IGNLKSLLQLDLSENQ 286 (725)
Q Consensus 233 ~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~ 286 (725)
||++|. ++......|.+++.|++|.++.|.. .+|.. +...+.|.+|++.++-
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 999875 3333334567889999999999863 35543 4678899999998763
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=2.8e-06 Score=81.65 Aligned_cols=232 Identities=19% Similarity=0.139 Sum_probs=122.5
Q ss_pred ccCCCCCCEEEccCCcCCCCCCc-cc-ccCCCCCcccccCccCCC--cCccccCCCcccceeecccCccccccchhhccC
Q 045649 295 LGNLSSLTVMSLFSNSLSGFIPP-IL-GNLKSLSALGLHINQLNG--VIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYL 370 (725)
Q Consensus 295 l~~l~~L~~L~L~~n~l~~~~~~-~l-~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 370 (725)
+.....++.+.+.++.+...... .+ ..++.++++||.+|.++. .+...+.++|.|+.|+++.|.+...+...-...
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~ 120 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL 120 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence 33344566666767666432111 12 356789999999999874 244456789999999999998876544322356
Q ss_pred CcccEEecccCccCcc-CCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEE
Q 045649 371 KSIFELDLCTNRLSGA-IPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLD 449 (725)
Q Consensus 371 ~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 449 (725)
.+|+.|-+.+..+.-. ....+..++.++.+.++.|.+.. +.+..+.+... .+.++++.
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq--------------~n~Dd~c~e~~-------s~~v~tlh 179 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ--------------LNLDDNCIEDW-------STEVLTLH 179 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh--------------hcccccccccc-------chhhhhhh
Confidence 6888888888766422 22234456666666666664321 12222221111 11233333
Q ss_pred CcCCccccc--cCccccCCCCCcEEeCCCccccCCC-CcccCCCCCCcEEeCCCCeeeecc-cccccCCCCCCeeeCCCC
Q 045649 450 FSQNNFYGE--ISFNWRNFPKLCTFNASMNNIYGSI-PTEIGDLSKLQVLDLSSNHIVGEI-PVQLGKLFSLTKLILNSN 525 (725)
Q Consensus 450 ls~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n 525 (725)
+..|...-- +..--.-+|++..+-+..|.+...- -..+..++.+.-|+|+.|++.... -.++.++++|..|.++++
T Consensus 180 ~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 180 QLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSEN 259 (418)
T ss_pred cCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCC
Confidence 333321100 0000122455555555555443221 223444555556666666664221 234556667777777777
Q ss_pred cCCCCCCc------ccCCCCCCcEEEcc
Q 045649 526 QLSGGIPL------ELGSLTELQYIDLS 547 (725)
Q Consensus 526 ~l~~~~~~------~l~~l~~L~~L~Ls 547 (725)
++...... -++++++++.|+=+
T Consensus 260 Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 260 PLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cccccccCCcceEEEEeeccceEEecCc
Confidence 66543221 14566777766644
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.76 E-value=8e-06 Score=77.59 Aligned_cols=221 Identities=19% Similarity=0.182 Sum_probs=122.4
Q ss_pred CCEEEEEcCCCCCccccCc---ccccCCCCCCEEECCCCCCCCC----Cc-------cccCCCCCCCEEeCCCCCCCccC
Q 045649 82 ERVISINLSSMGLNGTLQE---FAFSSFPHLVRLNLSFNIVFGT----IP-------PQVGNLSELQYLDLGSNQLTGVI 147 (725)
Q Consensus 82 ~~v~~l~l~~~~l~~~~~~---~~l~~l~~L~~L~Ls~n~~~~~----~~-------~~~~~l~~L~~L~Ls~n~l~~~~ 147 (725)
..++.++||++.+...-.. ..+.+-.+|+..++|.- ++|. ++ .++.+|++|+..+||.|.|....
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5789999999987643221 24667788888888763 2232 33 35678999999999999887666
Q ss_pred Ccc----CcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCc---
Q 045649 148 PQE----IGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIP--- 220 (725)
Q Consensus 148 p~~----~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p--- 220 (725)
|+. +++-..|.+|.+++|.+--.....+++ .|.+ |..| .-..+-|.|++.....|++.....
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~n-------KKaa~kp~Le~vicgrNRlengs~~~~ 177 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYN-------KKAADKPKLEVVICGRNRLENGSKELS 177 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHH-------hhhccCCCceEEEeccchhccCcHHHH
Confidence 643 456677888888877653111111110 0000 0000 011233555555555555521100
Q ss_pred -cccCCCCCCCEEEcccCcCccc-----CCcCccCCCCCceEEeecccccccC----CccccCCCCCCEEECcCccCCcc
Q 045649 221 -LVLGNLKSLSTLDLSKNQLSGL-----IPFSLGNLSNLGILYLYSNSLSGHI----PSVIGNLKSLLQLDLSENQLSGS 290 (725)
Q Consensus 221 -~~l~~l~~L~~L~Ls~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~ 290 (725)
..+..-.+|+++.+..|.|.-. +-..+..+.+|+.||+.+|.++-.- ...+...+.|+.|.+..|-++..
T Consensus 178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence 1122224566666666655421 1112345667777777777665222 22334445677777777766543
Q ss_pred CCccc------cCCCCCCEEEccCCcCCCC
Q 045649 291 IPLSL------GNLSSLTVMSLFSNSLSGF 314 (725)
Q Consensus 291 ~p~~l------~~l~~L~~L~L~~n~l~~~ 314 (725)
...++ ...++|+.|...+|...+.
T Consensus 258 G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 258 GVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred cHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 32221 1246788888888766543
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=2.6e-05 Score=53.67 Aligned_cols=17 Identities=41% Similarity=0.712 Sum_probs=6.6
Q ss_pred ccCCCCCCEEeCCCCcc
Q 045649 607 ICNMKSLEKLNLCHNNL 623 (725)
Q Consensus 607 l~~l~~L~~L~L~~N~l 623 (725)
++++++|+.|++++|++
T Consensus 20 l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 20 LSNLPNLETLNLSNNPI 36 (44)
T ss_dssp GTTCTTSSEEEETSSCC
T ss_pred HhCCCCCCEEEecCCCC
Confidence 33333333333333333
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=6.3e-05 Score=78.01 Aligned_cols=136 Identities=16% Similarity=0.193 Sum_probs=83.8
Q ss_pred ccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCC-cCCCCCCcccCCCCCC
Q 045649 463 WRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSN-QLSGGIPLELGSLTEL 541 (725)
Q Consensus 463 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L 541 (725)
+..+.+++.|++++|.++. +|. -..+|++|.+++|.-...+|..+ .++|++|++++| .+. .+| .+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------ccc
Confidence 4457889999999987664 341 22468999998865434566544 357899999988 443 444 357
Q ss_pred cEEEccCCcccc--cchhhhhcccCCCeeeCcCCcCC--cCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEe
Q 045649 542 QYIDLSANKLRS--WIPKSIANLLKLYYLNLSNNQFS--QKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLN 617 (725)
Q Consensus 542 ~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 617 (725)
+.|+++.+.... .+| ++|+.|.+.+++.. ..+|..+. ++|++|++++|.... .|..+. .+|+.|+
T Consensus 115 e~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ 183 (426)
T PRK15386 115 RSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNII-LPEKLP--ESLQSIT 183 (426)
T ss_pred ceEEeCCCCCcccccCc------chHhheeccccccccccccccccC--CcccEEEecCCCccc-Cccccc--ccCcEEE
Confidence 777777665432 123 24667777543311 01111111 578899998888653 333333 5888888
Q ss_pred CCCCc
Q 045649 618 LCHNN 622 (725)
Q Consensus 618 L~~N~ 622 (725)
++.|.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 88763
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.65 E-value=0.0002 Score=74.32 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=27.6
Q ss_pred cCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCC
Q 045649 104 SSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVN 165 (725)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 165 (725)
..+.++++|++++|.+. .+| .+ -.+|++|++++|.--..+|..+ .++|++|++++|
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 34466677777766543 233 11 1246666666543222444333 235555555555
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.61 E-value=5.8e-05 Score=51.93 Aligned_cols=36 Identities=42% Similarity=0.559 Sum_probs=15.3
Q ss_pred CCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCC
Q 045649 564 KLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLD 600 (725)
Q Consensus 564 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 600 (725)
+|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444443
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.54 E-value=3e-05 Score=87.40 Aligned_cols=149 Identities=23% Similarity=0.260 Sum_probs=93.2
Q ss_pred CCCCEEeCCCCCC-CccCCccCc-CCCCCCEEEccCCcCCcC-CCcccCCCCCCCEEEccccccCCCCccccCCCCCCCE
Q 045649 131 SELQYLDLGSNQL-TGVIPQEIG-HLNQLRSLYFDVNQLHGS-IPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLAN 207 (725)
Q Consensus 131 ~~L~~L~Ls~n~l-~~~~p~~~~-~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 207 (725)
.+|++||+++... ...-|..++ .+|+|++|.+++-.+... .-....++++|+.||+|+++++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 6788888877643 223334454 478888888877655422 122345778888888888887743 56778888888
Q ss_pred EEecCCCCCc-cCccccCCCCCCCEEEcccCcCcccC--C----cCccCCCCCceEEeecccccccCCccc-cCCCCCCE
Q 045649 208 FYLNNNSLFD-SIPLVLGNLKSLSTLDLSKNQLSGLI--P----FSLGNLSNLGILYLYSNSLSGHIPSVI-GNLKSLLQ 279 (725)
Q Consensus 208 L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~ 279 (725)
|.+.+-.+.. ..-..+.++++|++||+|........ . +.-..+|+|+.||.+++.+...+-..+ ..-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 8887766532 12234667888888888876543221 0 112347889999998887765433322 23344444
Q ss_pred EE
Q 045649 280 LD 281 (725)
Q Consensus 280 L~ 281 (725)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 43
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.54 E-value=0.00013 Score=66.65 Aligned_cols=103 Identities=25% Similarity=0.225 Sum_probs=54.4
Q ss_pred CcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCC-ccccCCCCCCEEeCC
Q 045649 541 LQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMP-FQICNMKSLEKLNLC 619 (725)
Q Consensus 541 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~ 619 (725)
...+||++|.+... ..|..++.|.+|.+++|+|+.+.|.--.-++.|+.|.|.+|.+..... ..+..++.|++|.+-
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 34455555554332 234445555555555555554444433444455555555555533211 125566777777777
Q ss_pred CCcccccC---CccccCCCCCCeeeCcCC
Q 045649 620 HNNLSGFI---PRCFEGMHNLSHIDISYN 645 (725)
Q Consensus 620 ~N~l~~~~---p~~l~~l~~L~~L~ls~N 645 (725)
+|+....- --.+..+++|++||.+.=
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 77765331 123455777777777654
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.49 E-value=0.00018 Score=63.68 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=18.9
Q ss_pred cCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEc
Q 045649 487 IGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDL 546 (725)
Q Consensus 487 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 546 (725)
|.++++|+.+.+.. .+.......|..+++|+.+++.++ +.......|..+++++.+.+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence 44444455555442 233333334444444444444432 22222233344434444444
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.41 E-value=0.00034 Score=61.86 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=41.8
Q ss_pred cccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCC
Q 045649 510 QLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHL 589 (725)
Q Consensus 510 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 589 (725)
.|.++++|+.+.+.. .+.......|.++++|+.+++..+ +..+...+|.++++++.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344444555555543 233233334444545555555443 4443344455554555555543 2322333344445555
Q ss_pred CEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCC
Q 045649 590 SELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNL 637 (725)
Q Consensus 590 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 637 (725)
+.+++..+ +.......|.++ .|+.+.+.. .+.......|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 55555443 433334444444 555555543 3332333444444443
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=4.4e-05 Score=86.10 Aligned_cols=134 Identities=18% Similarity=0.223 Sum_probs=84.9
Q ss_pred CCCCEEEccCCcCC-cCCCcccC-CCCCCCEEEccccccCC-CCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCE
Q 045649 155 NQLRSLYFDVNQLH-GSIPPEIG-QLNLINELALCHNNLHG-PIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLST 231 (725)
Q Consensus 155 ~~L~~L~l~~n~l~-~~~p~~~~-~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 231 (725)
.+|++|++++.... ...|..++ .+|+|+.|.+++-.+.. ..-....++++|..||+++.+++.. ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 56888888775432 22334443 46888888888766542 2223345778888888888877544 55778888888
Q ss_pred EEcccCcCcc-cCCcCccCCCCCceEEeecccccccC--C----ccccCCCCCCEEECcCccCCcc
Q 045649 232 LDLSKNQLSG-LIPFSLGNLSNLGILYLYSNSLSGHI--P----SVIGNLKSLLQLDLSENQLSGS 290 (725)
Q Consensus 232 L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--p----~~l~~l~~L~~L~Ls~n~l~~~ 290 (725)
|.+.+=.+.. ..-..+.++++|++||+|........ . +.-..+|+|+.||.|++.+.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 8777655543 11234667888888888876543211 0 1113477888888887776644
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.38 E-value=0.00029 Score=64.44 Aligned_cols=36 Identities=22% Similarity=0.168 Sum_probs=15.7
Q ss_pred CCCCCCEEEcccCcCcccC---CcCccCCCCCceEEeec
Q 045649 225 NLKSLSTLDLSKNQLSGLI---PFSLGNLSNLGILYLYS 260 (725)
Q Consensus 225 ~l~~L~~L~Ls~n~l~~~~---~~~l~~l~~L~~L~L~~ 260 (725)
.||+|++|.+-+|.++... -..+..+++|++||...
T Consensus 111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 3444444444444443221 11234455555555543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.92 E-value=0.00047 Score=65.97 Aligned_cols=108 Identities=20% Similarity=0.158 Sum_probs=58.0
Q ss_pred ccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCC--cccccchhhhhcccCCCeeeCcCCcCCcCCchh--
Q 045649 507 IPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSAN--KLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIE-- 582 (725)
Q Consensus 507 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-- 582 (725)
+......+..|+.+.+.+..++.. ..+..+++|+.|.+|.| ++.+-.+.-...+++|++|++++|++.. +..
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence 333444455666666666665522 23455667777777777 4444444444555777777777777642 222
Q ss_pred -hhcCCCCCEEeCCCCCCCccC---CccccCCCCCCEEeC
Q 045649 583 -VEKLIHLSELDLSYNFLDEEM---PFQICNMKSLEKLNL 618 (725)
Q Consensus 583 -~~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~L 618 (725)
+..+.+|..|++.+|.-+..- ...|.-+++|++||-
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 344455566666666554321 122344455555543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.86 E-value=0.00075 Score=64.60 Aligned_cols=89 Identities=25% Similarity=0.255 Sum_probs=46.1
Q ss_pred ccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCC--eeeecccccccCCCCCCeeeCCCCcCCCC-CCcccCCCC
Q 045649 463 WRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSN--HIVGEIPVQLGKLFSLTKLILNSNQLSGG-IPLELGSLT 539 (725)
Q Consensus 463 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~ 539 (725)
...+..|+.+.+.+..++.. ..+-.+++|+.|+++.| ++++.++.....+++|+++++++|++... .-..+..+.
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 33444455555544444322 23445566667777766 55555555555566666666666666420 001133445
Q ss_pred CCcEEEccCCcccc
Q 045649 540 ELQYIDLSANKLRS 553 (725)
Q Consensus 540 ~L~~L~Ls~n~l~~ 553 (725)
+|..|++.+|..+.
T Consensus 117 nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcccCCccc
Confidence 55566666655443
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.54 E-value=0.00019 Score=72.68 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=16.8
Q ss_pred CCCEEECcCccCCccCC--ccccCCCCCCEEEccCCc
Q 045649 276 SLLQLDLSENQLSGSIP--LSLGNLSSLTVMSLFSNS 310 (725)
Q Consensus 276 ~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~ 310 (725)
.|+.|.+.++.-.+.-+ .....++++++|.+.++.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~ 175 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK 175 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcce
Confidence 45666666654332211 122345566666555554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.00026 Score=67.83 Aligned_cols=100 Identities=23% Similarity=0.128 Sum_probs=62.8
Q ss_pred CCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCc-hhhhcCCCCCEE
Q 045649 514 LFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIP-IEVEKLIHLSEL 592 (725)
Q Consensus 514 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L 592 (725)
+.+.++|+.-+|.++++ .....++.|++|.||-|+|+.. ..+..|++|++|+|..|.|..... .-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 33556666667766532 1234677788888888888775 346778888888888887753221 225667777777
Q ss_pred eCCCCCCCccCCcc-----ccCCCCCCEEe
Q 045649 593 DLSYNFLDEEMPFQ-----ICNMKSLEKLN 617 (725)
Q Consensus 593 ~Ls~N~l~~~~p~~-----l~~l~~L~~L~ 617 (725)
.|..|+-.|.-+.. +.-+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777766654432 33455555554
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.34 E-value=0.00019 Score=72.79 Aligned_cols=88 Identities=19% Similarity=0.144 Sum_probs=48.6
Q ss_pred CCCCCcEEEccCCcccc--cchhhhhcccCCCeeeCcCCcCCcCC-----chhhhcCCCCCEEeCCCCCCC-ccCCcccc
Q 045649 537 SLTELQYIDLSANKLRS--WIPKSIANLLKLYYLNLSNNQFSQKI-----PIEVEKLIHLSELDLSYNFLD-EEMPFQIC 608 (725)
Q Consensus 537 ~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~ 608 (725)
+++.|+.+++.++.... .+...-.+++.|++|.++++...... ...-..+..|+.+.|++++.+ +..-+.+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 34556666665554311 01111234566667766666542211 111234566778888888753 33334566
Q ss_pred CCCCCCEEeCCCCccc
Q 045649 609 NMKSLEKLNLCHNNLS 624 (725)
Q Consensus 609 ~l~~L~~L~L~~N~l~ 624 (725)
.+++||.+++-+++--
T Consensus 424 ~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDV 439 (483)
T ss_pred hCcccceeeeechhhh
Confidence 7788888888887643
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.00034 Score=67.03 Aligned_cols=100 Identities=23% Similarity=0.207 Sum_probs=78.7
Q ss_pred CCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCC-ccccCCCCCCEE
Q 045649 538 LTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMP-FQICNMKSLEKL 616 (725)
Q Consensus 538 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L 616 (725)
+.+.+.|+..+|.++++ .....++.|++|.||-|+++.. ..+..|+.|++|+|..|.|..... .-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45677889999999875 4567889999999999999755 457889999999999999865433 235789999999
Q ss_pred eCCCCcccccCCcc-----ccCCCCCCeee
Q 045649 617 NLCHNNLSGFIPRC-----FEGMHNLSHID 641 (725)
Q Consensus 617 ~L~~N~l~~~~p~~-----l~~l~~L~~L~ 641 (725)
.|..|.-.|.-+.. +.-+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999888776543 44577777775
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.88 E-value=0.00052 Score=76.06 Aligned_cols=16 Identities=25% Similarity=0.247 Sum_probs=8.2
Q ss_pred cccCCCCCcccccCcc
Q 045649 319 LGNLKSLSALGLHINQ 334 (725)
Q Consensus 319 l~~l~~L~~L~L~~n~ 334 (725)
...+++++.+.+..+.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 3445555555555544
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.80 E-value=0.00094 Score=74.04 Aligned_cols=100 Identities=23% Similarity=0.146 Sum_probs=43.5
Q ss_pred CCCCcEEeCCCcc-ccCC-CCcccCCCCCCcEEeCCCCeeeec--ccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCC
Q 045649 466 FPKLCTFNASMNN-IYGS-IPTEIGDLSKLQVLDLSSNHIVGE--IPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTEL 541 (725)
Q Consensus 466 ~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 541 (725)
|++|+.|.+.++. ++.. +-.....++.|++|+++.|..... +......|++|+.|.+....- +..+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~~l 337 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CPSL 337 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------CccH
Confidence 4555555544444 2222 112233455566666666553211 222233355555544332211 3334
Q ss_pred cEEEccCCcc---cccchhhhhcccCCCeeeCcCCcC
Q 045649 542 QYIDLSANKL---RSWIPKSIANLLKLYYLNLSNNQF 575 (725)
Q Consensus 542 ~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l 575 (725)
+.+.+....- ..........++.++.+.+..+..
T Consensus 338 ~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 338 TDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI 374 (482)
T ss_pred HHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence 4444333222 112223445666677777766663
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.08 E-value=0.0072 Score=34.45 Aligned_cols=18 Identities=56% Similarity=0.800 Sum_probs=8.2
Q ss_pred CCEEeCCCCcccccCCccc
Q 045649 613 LEKLNLCHNNLSGFIPRCF 631 (725)
Q Consensus 613 L~~L~L~~N~l~~~~p~~l 631 (725)
|++|||++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555444 344333
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.62 E-value=0.0098 Score=33.87 Aligned_cols=12 Identities=58% Similarity=0.476 Sum_probs=6.2
Q ss_pred CCEEeCCCCCCC
Q 045649 589 LSELDLSYNFLD 600 (725)
Q Consensus 589 L~~L~Ls~N~l~ 600 (725)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 445555555554
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.82 E-value=0.00059 Score=73.78 Aligned_cols=181 Identities=26% Similarity=0.248 Sum_probs=94.6
Q ss_pred CCCEEECcCCcccccc----CccccCCCCCcEEeCCCccccCCCCc----ccCCC-CCCcEEeCCCCeeeec----cccc
Q 045649 444 NLTFLDFSQNNFYGEI----SFNWRNFPKLCTFNASMNNIYGSIPT----EIGDL-SKLQVLDLSSNHIVGE----IPVQ 510 (725)
Q Consensus 444 ~L~~L~ls~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l-~~L~~L~Ls~n~l~~~----~~~~ 510 (725)
.+..+.+.+|.+.... ...+...+.|+.|+++.|.+.+..-. .+... ..+++|++..|.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3777888888776442 23345667777788888777633211 12222 4566677776666533 3344
Q ss_pred ccCCCCCCeeeCCCCcCCC----CCCcccC----CCCCCcEEEccCCcccccc----hhhhhcccC-CCeeeCcCCcCCc
Q 045649 511 LGKLFSLTKLILNSNQLSG----GIPLELG----SLTELQYIDLSANKLRSWI----PKSIANLLK-LYYLNLSNNQFSQ 577 (725)
Q Consensus 511 ~~~l~~L~~L~Ls~n~l~~----~~~~~l~----~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~-L~~L~Ls~n~l~~ 577 (725)
+.....++.++++.|.+.. .++..+. ...++++|.+++|.++... ...+...++ +..+++.+|++.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 5556667777777776531 1111222 3455666666666654311 112233333 5556666666543
Q ss_pred C----CchhhhcC-CCCCEEeCCCCCCCccCC----ccccCCCCCCEEeCCCCccc
Q 045649 578 K----IPIEVEKL-IHLSELDLSYNFLDEEMP----FQICNMKSLEKLNLCHNNLS 624 (725)
Q Consensus 578 ~----~p~~~~~l-~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~ 624 (725)
. ....+..+ ..++.++++.|.+++... +.+..++.++++.+++|.+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 2 11223333 445666666666654332 22334455566666666554
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.20 E-value=0.00088 Score=72.43 Aligned_cols=204 Identities=26% Similarity=0.192 Sum_probs=129.6
Q ss_pred CCcEEEccCCcCccccc----ccccCCCCCCEEECcCCccccccC----ccccCC-CCCcEEeCCCccccCC----CCcc
Q 045649 420 SLERVRFNQNNLSGKVY----EAFGYHPNLTFLDFSQNNFYGEIS----FNWRNF-PKLCTFNASMNNIYGS----IPTE 486 (725)
Q Consensus 420 ~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~ls~n~l~~~~~----~~~~~~-~~L~~L~l~~n~l~~~----~~~~ 486 (725)
.+..+.+.+|.+..... ..+...+.|..|++++|.+.+... ..+... ..++.|++..|.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 47788888888875543 345567889999999998874321 122222 5567777877777654 3445
Q ss_pred cCCCCCCcEEeCCCCeeee----ccccccc----CCCCCCeeeCCCCcCCCCC----CcccCCCCC-CcEEEccCCcccc
Q 045649 487 IGDLSKLQVLDLSSNHIVG----EIPVQLG----KLFSLTKLILNSNQLSGGI----PLELGSLTE-LQYIDLSANKLRS 553 (725)
Q Consensus 487 ~~~l~~L~~L~Ls~n~l~~----~~~~~~~----~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~-L~~L~Ls~n~l~~ 553 (725)
+.....++.++++.|.+.. .++..+. ...++++|++++|.++... ...+...++ +..+++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 6667888899999888731 1223333 4678899999999876321 112344455 6678999988865
Q ss_pred cc----hhhhhcc-cCCCeeeCcCCcCCcCCc----hhhhcCCCCCEEeCCCCCCCccCCc----cccCCCCCCEEeCCC
Q 045649 554 WI----PKSIANL-LKLYYLNLSNNQFSQKIP----IEVEKLIHLSELDLSYNFLDEEMPF----QICNMKSLEKLNLCH 620 (725)
Q Consensus 554 ~~----~~~~~~l-~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~L~~ 620 (725)
.. ...+..+ ..+++++++.|.++..-. ..+..+..++++.++.|.+...--. ....-..+..+-+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 32 2344445 567899999999876433 4456677889999999988653221 122234444555554
Q ss_pred Ccc
Q 045649 621 NNL 623 (725)
Q Consensus 621 N~l 623 (725)
+..
T Consensus 328 ~~~ 330 (478)
T KOG4308|consen 328 TGK 330 (478)
T ss_pred cCc
Confidence 443
No 76
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=91.21 E-value=0.064 Score=45.64 Aligned_cols=30 Identities=7% Similarity=0.014 Sum_probs=17.2
Q ss_pred EEeehHHHHHHHHHHHHHHHhheeEecccc
Q 045649 693 VVIMFSSLMMVILLICLIGFKVLFQQRKDS 722 (725)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (725)
.++.|++.+++.++.++++++|++||+|||
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456666666666666666566666555544
No 77
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=90.97 E-value=0.14 Score=44.77 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=17.1
Q ss_pred ceEEeehHHHHHHHHHHHHHHHhheeEeccc
Q 045649 691 KWVVIMFSSLMMVILLICLIGFKVLFQQRKD 721 (725)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (725)
+..+|.+++.+.+.+++++++++|+|++|++
T Consensus 48 knIVIGvVVGVGg~ill~il~lvf~~c~r~k 78 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILLGILALVFIFCIRRK 78 (154)
T ss_pred ccEEEEEEecccHHHHHHHHHhheeEEEecc
Confidence 4566666666655555555555555544443
No 78
>PF15102 TMEM154: TMEM154 protein family
Probab=89.73 E-value=0.43 Score=41.64 Aligned_cols=17 Identities=6% Similarity=0.526 Sum_probs=7.5
Q ss_pred HHHHHHHhheeEecccc
Q 045649 706 LICLIGFKVLFQQRKDS 722 (725)
Q Consensus 706 ~~~~~~~~~~~~~~~~~ 722 (725)
++++++++++++|||.|
T Consensus 72 Ll~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 72 LLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHheeEEeecccC
Confidence 33444444444444443
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.44 E-value=0.24 Score=26.06 Aligned_cols=10 Identities=60% Similarity=0.594 Sum_probs=3.3
Q ss_pred CCEEeCCCCC
Q 045649 589 LSELDLSYNF 598 (725)
Q Consensus 589 L~~L~Ls~N~ 598 (725)
|+.|+|++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3344444443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.15 E-value=0.42 Score=28.33 Aligned_cols=13 Identities=46% Similarity=0.736 Sum_probs=5.7
Q ss_pred CCCEEeCCCCccc
Q 045649 612 SLEKLNLCHNNLS 624 (725)
Q Consensus 612 ~L~~L~L~~N~l~ 624 (725)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.15 E-value=0.42 Score=28.33 Aligned_cols=13 Identities=46% Similarity=0.736 Sum_probs=5.7
Q ss_pred CCCEEeCCCCccc
Q 045649 612 SLEKLNLCHNNLS 624 (725)
Q Consensus 612 ~L~~L~L~~N~l~ 624 (725)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.07 E-value=0.41 Score=28.37 Aligned_cols=19 Identities=53% Similarity=0.558 Sum_probs=12.4
Q ss_pred CCCCCEEeCCCCCCCccCC
Q 045649 586 LIHLSELDLSYNFLDEEMP 604 (725)
Q Consensus 586 l~~L~~L~Ls~N~l~~~~p 604 (725)
+++|++|+|++|++....+
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 3567777777777765543
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.07 E-value=0.41 Score=28.37 Aligned_cols=19 Identities=53% Similarity=0.558 Sum_probs=12.4
Q ss_pred CCCCCEEeCCCCCCCccCC
Q 045649 586 LIHLSELDLSYNFLDEEMP 604 (725)
Q Consensus 586 l~~L~~L~Ls~N~l~~~~p 604 (725)
+++|++|+|++|++....+
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 3567777777777765543
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.93 E-value=0.016 Score=54.43 Aligned_cols=88 Identities=22% Similarity=0.238 Sum_probs=66.0
Q ss_pred ccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCC
Q 045649 534 ELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSL 613 (725)
Q Consensus 534 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 613 (725)
.+......+.||++.|++.. .-..|+-++.+..||++.|.+. ..|..++++..+..+++-.|.. ...|.+++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch-hhCCccccccCCc
Confidence 35566778888888888765 3345677778888888888885 6788888887788887777766 4567777888888
Q ss_pred CEEeCCCCccc
Q 045649 614 EKLNLCHNNLS 624 (725)
Q Consensus 614 ~~L~L~~N~l~ 624 (725)
+++++-+|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 88888888754
No 85
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=87.87 E-value=0.53 Score=48.32 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=21.2
Q ss_pred eEEeehHHHHHHHHHHHHHHHhheeEeccccc
Q 045649 692 WVVIMFSSLMMVILLICLIGFKVLFQQRKDSA 723 (725)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (725)
..++.|+++++++.++++++++|++.|||+.+
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEeccccc
Confidence 34566666666666666776777777777654
No 86
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=86.81 E-value=0.53 Score=38.55 Aligned_cols=33 Identities=9% Similarity=-0.129 Sum_probs=16.4
Q ss_pred CCceEEeehHHHHHHHHHHHHHHHhheeEeccc
Q 045649 689 RKKWVVIMFSSLMMVILLICLIGFKVLFQQRKD 721 (725)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (725)
.+...+..+++.+++++.+++.+++|+|.+|||
T Consensus 63 ls~gaiagi~vg~~~~v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 63 LSTGAIAGISVAVVAVVGGLVGFLCWWFVCRGK 95 (96)
T ss_pred cccccEEEEEeehhhHHHHHHHHHhheeEEeec
Confidence 334445555544444444445455566655543
No 87
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=85.51 E-value=1.1 Score=41.88 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=19.1
Q ss_pred EEeehHHHHHHHHHHHHHHHhheeEecccccc
Q 045649 693 VVIMFSSLMMVILLICLIGFKVLFQQRKDSAK 724 (725)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (725)
++|++++.+.++++++++..+|+++.||.+++
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~~~ 132 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQRRSWSK 132 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhhccCCc
Confidence 55555555545556666656666666666544
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.45 E-value=0.046 Score=51.51 Aligned_cols=89 Identities=22% Similarity=0.230 Sum_probs=69.1
Q ss_pred cccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCC
Q 045649 510 QLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHL 589 (725)
Q Consensus 510 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 589 (725)
.+......+.||++.|++. .....|+-++.+..||++.|.+.- .|..+.....++.+++..|+.+ ..|.+++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4455667788888888776 344556667788888998888765 6778888888888888888886 678888888889
Q ss_pred CEEeCCCCCCCc
Q 045649 590 SELDLSYNFLDE 601 (725)
Q Consensus 590 ~~L~Ls~N~l~~ 601 (725)
+.+++-.|.+..
T Consensus 114 k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 114 KKNEQKKTEFFR 125 (326)
T ss_pred chhhhccCcchH
Confidence 988888887653
No 89
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.58 E-value=0.28 Score=45.54 Aligned_cols=81 Identities=26% Similarity=0.230 Sum_probs=42.2
Q ss_pred CCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCC-CCccc-CCCCCCcEEEccCC-cccccchhhhhcccCCCee
Q 045649 492 KLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGG-IPLEL-GSLTELQYIDLSAN-KLRSWIPKSIANLLKLYYL 568 (725)
Q Consensus 492 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l-~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 568 (725)
.++.+|-++..|..+.-.-+.++++++.|.+.+|.--+. --+.+ +-.++|+.|++++| +|+...-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 345555555555544444555555666666665532110 00001 12356777777766 3555444556666666666
Q ss_pred eCcC
Q 045649 569 NLSN 572 (725)
Q Consensus 569 ~Ls~ 572 (725)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 90
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.02 E-value=0.61 Score=27.01 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=6.7
Q ss_pred CCCcEEEccCCcccc
Q 045649 539 TELQYIDLSANKLRS 553 (725)
Q Consensus 539 ~~L~~L~Ls~n~l~~ 553 (725)
++|++|++++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555544
No 91
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.98 E-value=0.23 Score=46.08 Aligned_cols=34 Identities=38% Similarity=0.263 Sum_probs=17.3
Q ss_pred CCCcEEeCCCCe-eeecccccccCCCCCCeeeCCC
Q 045649 491 SKLQVLDLSSNH-IVGEIPVQLGKLFSLTKLILNS 524 (725)
Q Consensus 491 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~ 524 (725)
++|+.|++++|. |+...-..+..+++|+.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 455566666553 4444344445555555555543
No 92
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=79.40 E-value=2.1 Score=35.48 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=13.8
Q ss_pred ceEEeehHHHHHHHHHHHHHHHhhee-Eeccc
Q 045649 691 KWVVIMFSSLMMVILLICLIGFKVLF-QQRKD 721 (725)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 721 (725)
...++++++++++.+++++.+++|++ .|.|+
T Consensus 60 ~~~iili~lls~v~IlVily~IyYFVILRer~ 91 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVILYAIYYFVILRERQ 91 (101)
T ss_pred cccchHHHHHHHHHHHHHHhhheEEEEEeccc
Confidence 34444444444444444444444444 44433
No 93
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=77.37 E-value=0.76 Score=33.69 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=0.4
Q ss_pred eehHHHHHHHHHHHHHHHhheeEecc
Q 045649 695 IMFSSLMMVILLICLIGFKVLFQQRK 720 (725)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (725)
..+++.++++++++++++.+++.|.|
T Consensus 12 aavIaG~Vvgll~ailLIlf~iyR~r 37 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILLILFLIYRMR 37 (64)
T ss_dssp -------------------------S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444433
No 94
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=77.36 E-value=1.3 Score=37.87 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=10.7
Q ss_pred HHHHHHHHHhheeEeccccc
Q 045649 704 ILLICLIGFKVLFQQRKDSA 723 (725)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~ 723 (725)
+.++++++++++|.+||||+
T Consensus 40 Vliiiiivli~lcssRKkKa 59 (189)
T PF05568_consen 40 VLIIIIIVLIYLCSSRKKKA 59 (189)
T ss_pred HHHHHHHHHHHHHhhhhHHH
Confidence 33444455566666665544
No 95
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=72.89 E-value=1.1 Score=44.61 Aligned_cols=14 Identities=14% Similarity=-0.028 Sum_probs=0.0
Q ss_pred HHHHHhheeEeccc
Q 045649 708 CLIGFKVLFQQRKD 721 (725)
Q Consensus 708 ~~~~~~~~~~~~~~ 721 (725)
++++++++++||||
T Consensus 161 IA~iIa~icyrrkR 174 (290)
T PF05454_consen 161 IAGIIACICYRRKR 174 (290)
T ss_dssp --------------
T ss_pred HHHHHHHHhhhhhh
Confidence 33334444444443
No 96
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=70.67 E-value=4 Score=31.82 Aligned_cols=8 Identities=13% Similarity=0.343 Sum_probs=0.0
Q ss_pred eEeccccc
Q 045649 716 FQQRKDSA 723 (725)
Q Consensus 716 ~~~~~~~~ 723 (725)
|++.|+++
T Consensus 30 Yrk~~rqr 37 (81)
T PF00558_consen 30 YRKIKRQR 37 (81)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 34444444
No 97
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.11 E-value=4.6 Score=24.02 Aligned_cols=12 Identities=58% Similarity=0.708 Sum_probs=5.4
Q ss_pred CCCEEeCCCCCC
Q 045649 588 HLSELDLSYNFL 599 (725)
Q Consensus 588 ~L~~L~Ls~N~l 599 (725)
+|+.|++++|+|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 344444444444
No 98
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=67.24 E-value=2.3 Score=42.89 Aligned_cols=28 Identities=11% Similarity=0.361 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHhheeEecccccc
Q 045649 697 FSSLMMVILLICLIGFKVLFQQRKDSAK 724 (725)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (725)
++.+++++++++|.+++|++.|.|||||
T Consensus 259 ~aSiiaIliIVLIMvIIYLILRYRRKKK 286 (299)
T PF02009_consen 259 IASIIAILIIVLIMVIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555666667888999999776
No 99
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=61.28 E-value=4.2 Score=39.84 Aligned_cols=8 Identities=38% Similarity=0.638 Sum_probs=3.5
Q ss_pred hheeEecc
Q 045649 713 KVLFQQRK 720 (725)
Q Consensus 713 ~~~~~~~~ 720 (725)
+|.+||||
T Consensus 280 iWlyrrRK 287 (295)
T TIGR01478 280 IWLYRRRK 287 (295)
T ss_pred HHHHHhhc
Confidence 34444444
No 100
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=61.12 E-value=5.3 Score=37.41 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=9.0
Q ss_pred CceEEeehHHHHHHHHHHHH
Q 045649 690 KKWVVIMFSSLMMVILLICL 709 (725)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~ 709 (725)
..+++++++++++.|+++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~ 55 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIF 55 (221)
T ss_pred ceeeeeeeecchhhhHHHHH
Confidence 34455555544444443333
No 101
>PTZ00370 STEVOR; Provisional
Probab=60.26 E-value=4.4 Score=39.78 Aligned_cols=8 Identities=38% Similarity=0.638 Sum_probs=3.5
Q ss_pred hheeEecc
Q 045649 713 KVLFQQRK 720 (725)
Q Consensus 713 ~~~~~~~~ 720 (725)
+|.+||||
T Consensus 276 iwlyrrRK 283 (296)
T PTZ00370 276 IWLYRRRK 283 (296)
T ss_pred HHHHHhhc
Confidence 34444444
No 102
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=60.24 E-value=6.4 Score=23.37 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=7.8
Q ss_pred CCCEEeCCCCccc
Q 045649 612 SLEKLNLCHNNLS 624 (725)
Q Consensus 612 ~L~~L~L~~N~l~ 624 (725)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4566666666655
No 103
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.72 E-value=9.2 Score=23.10 Aligned_cols=14 Identities=43% Similarity=0.660 Sum_probs=7.9
Q ss_pred CCCCEEeCCCCccc
Q 045649 611 KSLEKLNLCHNNLS 624 (725)
Q Consensus 611 ~~L~~L~L~~N~l~ 624 (725)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34566666666554
No 104
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=56.13 E-value=5.6 Score=51.44 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=26.1
Q ss_pred eCCCCcccccCCccccCCCCCCeeeCcCCcccccCCCC
Q 045649 617 NLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS 654 (725)
Q Consensus 617 ~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 654 (725)
||++|+|+...+..|..+++|+.|+|++|++.|.+.-.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccH
Confidence 46677777666666777777777777777777766543
No 105
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=55.55 E-value=13 Score=40.93 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=19.3
Q ss_pred cCCCceEEeehHHHHHHHHHHHHHHHhheeEec
Q 045649 687 ASRKKWVVIMFSSLMMVILLICLIGFKVLFQQR 719 (725)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (725)
.....|+++++++.++++++||++ ++|+++|+
T Consensus 265 ~~~NlWII~gVlvPv~vV~~Iiii-l~~~LCRk 296 (684)
T PF12877_consen 265 PPNNLWIIAGVLVPVLVVLLIIII-LYWKLCRK 296 (684)
T ss_pred CCCCeEEEehHhHHHHHHHHHHHH-HHHHHhcc
Confidence 346678888887776655554444 44444443
No 106
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=53.64 E-value=7.2 Score=39.87 Aligned_cols=27 Identities=11% Similarity=0.362 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhheeEecccccc
Q 045649 698 SSLMMVILLICLIGFKVLFQQRKDSAK 724 (725)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (725)
+.++++++++++.+++|+..|-|||+|
T Consensus 314 aSiIAIvvIVLIMvIIYLILRYRRKKK 340 (353)
T TIGR01477 314 ASIIAILIIVLIMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 333444555555667888999999886
No 107
>PTZ00046 rifin; Provisional
Probab=53.38 E-value=7.3 Score=39.96 Aligned_cols=27 Identities=11% Similarity=0.342 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhheeEecccccc
Q 045649 698 SSLMMVILLICLIGFKVLFQQRKDSAK 724 (725)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (725)
+.+++++|++++.+++|+..|-|||+|
T Consensus 319 aSiiAIvVIVLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 319 ASIVAIVVIVLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 334444555555567888999999886
No 108
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=51.03 E-value=9.9 Score=33.18 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=18.2
Q ss_pred CCCceEEeehHHHHHHHHHHHHHHHhheeEecc
Q 045649 688 SRKKWVVIMFSSLMMVILLICLIGFKVLFQQRK 720 (725)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (725)
....++++++.+.+++.++++++.++-++..||
T Consensus 116 gY~nklilaisvtvv~~iliii~CLiei~shr~ 148 (154)
T PF14914_consen 116 GYNNKLILAISVTVVVMILIIIFCLIEICSHRR 148 (154)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344556666666665555556655555554433
No 109
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=49.27 E-value=10 Score=29.30 Aligned_cols=25 Identities=12% Similarity=0.331 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhheeEecccc
Q 045649 698 SSLMMVILLICLIGFKVLFQQRKDS 722 (725)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (725)
+..++++++++.++++.+|+.|++.
T Consensus 8 ~plivf~ifVap~WL~lHY~sk~~~ 32 (75)
T PF06667_consen 8 VPLIVFMIFVAPIWLILHYRSKWKS 32 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3333444455556667777665543
No 110
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=48.03 E-value=14 Score=39.52 Aligned_cols=36 Identities=11% Similarity=-0.064 Sum_probs=26.4
Q ss_pred ccCCCceEEeehHHHHHHHHHHHHHHHhheeEeccc
Q 045649 686 QASRKKWVVIMFSSLMMVILLICLIGFKVLFQQRKD 721 (725)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (725)
+...+...|..|+|++++||-.+|.++.|||.-|++
T Consensus 361 ~s~LstgaIaGIsvavvvvVgglvGfLcWwf~crgk 396 (397)
T PF03302_consen 361 KSGLSTGAIAGISVAVVVVVGGLVGFLCWWFICRGK 396 (397)
T ss_pred cccccccceeeeeehhHHHHHHHHHHHhhheeeccc
Confidence 345667788888888887877788888888765543
No 111
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=47.65 E-value=11 Score=28.08 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=18.8
Q ss_pred CCCceEEeehHHHHHHHHHHHHHHHhheeEecccc
Q 045649 688 SRKKWVVIMFSSLMMVILLICLIGFKVLFQQRKDS 722 (725)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (725)
....|..|.++..+++.++-.++=+++-+++.||+
T Consensus 29 sp~qW~aIGvi~gi~~~~lt~ltN~YFK~k~drr~ 63 (68)
T PF04971_consen 29 SPSQWAAIGVIGGIFFGLLTYLTNLYFKIKEDRRK 63 (68)
T ss_pred CcccchhHHHHHHHHHHHHHHHhHhhhhhhHhhhH
Confidence 34467777776665555554444444444444443
No 112
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=46.45 E-value=11 Score=38.98 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=13.8
Q ss_pred ceEEeehHHHHHHHHHHHHHHHhheeEecccc
Q 045649 691 KWVVIMFSSLMMVILLICLIGFKVLFQQRKDS 722 (725)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (725)
...+++.+.+-+++++++.++|.++++|||..
T Consensus 385 ~~~i~~avl~p~~il~~~~~~~~~~v~rrr~~ 416 (436)
T PTZ00208 385 TAMIILAVLVPAIILAIIAVAFFIMVKRRRNS 416 (436)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheeeeeccCC
Confidence 33444333333333333444345555666543
No 113
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=44.53 E-value=8.1 Score=30.74 Aligned_cols=15 Identities=20% Similarity=0.051 Sum_probs=5.9
Q ss_pred HHHHHHHhheeEecc
Q 045649 706 LICLIGFKVLFQQRK 720 (725)
Q Consensus 706 ~~~~~~~~~~~~~~~ 720 (725)
++++.+++++..|+|
T Consensus 55 lIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 55 LIIIALVCCCRAKHK 69 (98)
T ss_pred HHHHHHHHHhhhhhh
Confidence 333333344444443
No 114
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=44.42 E-value=11 Score=31.93 Aligned_cols=31 Identities=13% Similarity=0.001 Sum_probs=17.1
Q ss_pred EEeehHHHHHHHHHHHHHHHhheeEeccccc
Q 045649 693 VVIMFSSLMMVILLICLIGFKVLFQQRKDSA 723 (725)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (725)
.+...+.+.+++++++...++|..++||+++
T Consensus 81 ~~~G~vlLs~GLmlL~~~alcW~~~~rkK~~ 111 (129)
T PF15099_consen 81 SIFGPVLLSLGLMLLACSALCWKPIIRKKKK 111 (129)
T ss_pred hhehHHHHHHHHHHHHhhhheehhhhHhHHH
Confidence 3444555555565656655666665555443
No 115
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=44.27 E-value=17 Score=34.18 Aligned_cols=20 Identities=10% Similarity=0.213 Sum_probs=9.5
Q ss_pred ceEEeehHHHHHHHHHHHHH
Q 045649 691 KWVVIMFSSLMMVILLICLI 710 (725)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~ 710 (725)
.+..++|++.++++++++++
T Consensus 156 ~~~~laI~lPvvv~~~~~~~ 175 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIM 175 (189)
T ss_pred cceeEEEEccHHHHHHHHHH
Confidence 34455555555544443333
No 116
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=43.27 E-value=20 Score=25.15 Aligned_cols=8 Identities=13% Similarity=0.223 Sum_probs=3.4
Q ss_pred HhheeEec
Q 045649 712 FKVLFQQR 719 (725)
Q Consensus 712 ~~~~~~~~ 719 (725)
+++.++++
T Consensus 26 ~~w~~~~~ 33 (49)
T PF05545_consen 26 VIWAYRPR 33 (49)
T ss_pred HHHHHccc
Confidence 34444444
No 117
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=43.17 E-value=33 Score=34.35 Aligned_cols=30 Identities=0% Similarity=0.061 Sum_probs=14.1
Q ss_pred EEeehHHHHHHHHHHHHHHHhheeEecccc
Q 045649 693 VVIMFSSLMMVILLICLIGFKVLFQQRKDS 722 (725)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (725)
.+++|++.++++++.++++.++||+-+|+.
T Consensus 199 ~lv~Iv~~cvaG~aAliva~~cW~Rlqr~~ 228 (341)
T PF06809_consen 199 TLVLIVVCCVAGAAALIVAGYCWYRLQREI 228 (341)
T ss_pred eeehhHHHHHHHHHHHHHhhheEEEecccc
Confidence 333333333444444555555566555543
No 118
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=42.87 E-value=80 Score=33.87 Aligned_cols=273 Identities=15% Similarity=0.029 Sum_probs=133.5
Q ss_pred CCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccc---cCCCCCcEEEccCCcCcccccccccC---CC
Q 045649 370 LKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSL---RNLTSLERVRFNQNNLSGKVYEAFGY---HP 443 (725)
Q Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l---~~~~~L~~L~l~~n~l~~~~~~~~~~---~~ 443 (725)
-+.+++++++.|.+....|..+..-.. -+.+..++.+...-..+ ..-..+.+++++.|.....++..... -.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 356789999999988766655432111 13444444432211111 11235778888888887777755432 23
Q ss_pred CCCEEECcCCccccc---cCccccCCCCCcEEeCCCccccC--------CCCcccCCCCCCcEEeCCCCeeeecccccc-
Q 045649 444 NLTFLDFSQNNFYGE---ISFNWRNFPKLCTFNASMNNIYG--------SIPTEIGDLSKLQVLDLSSNHIVGEIPVQL- 511 (725)
Q Consensus 444 ~L~~L~ls~n~l~~~---~~~~~~~~~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~- 511 (725)
.++.++.+.-.++-. .+..++.-+.++..+++.|..+. .....|..-+++ .|++..+....+-+..+
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~L 320 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSML 320 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhh
Confidence 456666665544321 12333445577777777665431 112233333455 56666554432211111
Q ss_pred c-----CCCCCCeeeCCCCcCCCC--CCcccCCCCCCcEEEccCCcccccchhhh--hcccCCCeeeCcCCcCCc-CCch
Q 045649 512 G-----KLFSLTKLILNSNQLSGG--IPLELGSLTELQYIDLSANKLRSWIPKSI--ANLLKLYYLNLSNNQFSQ-KIPI 581 (725)
Q Consensus 512 ~-----~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~-~~p~ 581 (725)
- .-..=-++|++.|...+. ...++.. ..+++|.+..|.+.+...... ..-+..+.+++..-.-.. .++.
T Consensus 321 Lgla~ne~t~g~rldl~~cp~~~a~vleaci~g-~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~ 399 (553)
T KOG4242|consen 321 LGLAENEATLGARLDLRRCPLERAEVLEACIFG-QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSS 399 (553)
T ss_pred cccccccccccccCChhhccccccchhhccccc-eeeeEeeccccccccccccccceeeccccccccccccCCceecccc
Confidence 0 001112455555544321 1112222 237888888887766443222 222345555554322200 0010
Q ss_pred hh--------hcCCCCCEEeCCCCCCCccCCc---cccCCCCCCEEeCCCCccccc----CCccccCCCCCCeeeCcCCc
Q 045649 582 EV--------EKLIHLSELDLSYNFLDEEMPF---QICNMKSLEKLNLCHNNLSGF----IPRCFEGMHNLSHIDISYNE 646 (725)
Q Consensus 582 ~~--------~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~ls~N~ 646 (725)
.. ..-.-+..+.++.|++...... ....-+.+..|++++|..... +|..+..-..++.+..+.|.
T Consensus 400 ~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 400 TEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred ccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 00 1112356677777776433222 233446777888888766422 44555555556666666554
No 119
>PF15102 TMEM154: TMEM154 protein family
Probab=42.86 E-value=18 Score=31.92 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=22.4
Q ss_pred EeehHHHHHHHHHHHHHHHhheeEeccccccC
Q 045649 694 VIMFSSLMMVILLICLIGFKVLFQQRKDSAKQ 725 (725)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (725)
++++++. .++++++++++++++.+.||||.|
T Consensus 58 iLmIlIP-~VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 58 ILMILIP-LVLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred EEEEeHH-HHHHHHHHHHHHHheeEEeecccC
Confidence 4444433 357778888888889999998865
No 120
>PRK09458 pspB phage shock protein B; Provisional
Probab=42.48 E-value=23 Score=27.20 Aligned_cols=26 Identities=12% Similarity=0.360 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhheeEeccccc
Q 045649 698 SSLMMVILLICLIGFKVLFQQRKDSA 723 (725)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (725)
+.++++++++.-++++++|+.|++..
T Consensus 8 ~PliiF~ifVaPiWL~LHY~sk~~~~ 33 (75)
T PRK09458 8 IPLTIFVLFVAPIWLWLHYRSKRQGS 33 (75)
T ss_pred HhHHHHHHHHHHHHHHHhhcccccCC
Confidence 33444555556667777777665543
No 121
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=40.35 E-value=30 Score=26.83 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhhe
Q 045649 703 VILLICLIGFKVL 715 (725)
Q Consensus 703 ~~~~~~~~~~~~~ 715 (725)
++-++++++++++
T Consensus 45 vlTLLIv~~vy~c 57 (79)
T PF07213_consen 45 VLTLLIVLVVYYC 57 (79)
T ss_pred HHHHHHHHHHHhh
Confidence 3334444433333
No 122
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.26 E-value=35 Score=25.02 Aligned_cols=32 Identities=3% Similarity=0.098 Sum_probs=16.0
Q ss_pred cCCCceEEeehHHHHHHHHHHHHHHHhheeEe
Q 045649 687 ASRKKWVVIMFSSLMMVILLICLIGFKVLFQQ 718 (725)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (725)
...+...+++++++..++++++--.+.|.+.+
T Consensus 8 KGlnPGlIVLlvV~g~ll~flvGnyvlY~Yaq 39 (69)
T PF04689_consen 8 KGLNPGLIVLLVVAGLLLVFLVGNYVLYVYAQ 39 (69)
T ss_pred cCCCCCeEEeehHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666555554444444444444443
No 123
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=35.83 E-value=23 Score=27.48 Aligned_cols=21 Identities=0% Similarity=0.407 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhheeEeccc
Q 045649 701 MMVILLICLIGFKVLFQQRKD 721 (725)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~ 721 (725)
++++++++.+.++.+|+.|++
T Consensus 11 iif~ifVap~wl~lHY~~k~~ 31 (75)
T TIGR02976 11 IIFVIFVAPLWLILHYRSKRK 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 334444555556666655544
No 124
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=35.56 E-value=26 Score=31.81 Aligned_cols=11 Identities=27% Similarity=0.135 Sum_probs=4.2
Q ss_pred HHHHhheeEec
Q 045649 709 LIGFKVLFQQR 719 (725)
Q Consensus 709 ~~~~~~~~~~~ 719 (725)
+.+++..||-|
T Consensus 110 ~yfvir~~R~r 120 (163)
T PF06679_consen 110 LYFVIRTFRLR 120 (163)
T ss_pred HHHHHHHHhhc
Confidence 33333444333
No 125
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=35.39 E-value=35 Score=24.01 Aligned_cols=19 Identities=11% Similarity=-0.265 Sum_probs=8.7
Q ss_pred HHHHHHHHHhheeEecccc
Q 045649 704 ILLICLIGFKVLFQQRKDS 722 (725)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~ 722 (725)
.+.+++.+.++...+++.+
T Consensus 11 iv~~lLg~~I~~~~K~ygY 29 (50)
T PF12606_consen 11 IVMGLLGLSICTTLKAYGY 29 (50)
T ss_pred HHHHHHHHHHHHHhhcccc
Confidence 3334444445555555443
No 126
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=35.09 E-value=7.5 Score=32.21 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHhhee-Eecccc
Q 045649 706 LICLIGFKVLF-QQRKDS 722 (725)
Q Consensus 706 ~~~~~~~~~~~-~~~~~~ 722 (725)
+.+++++.+|+ +||..+
T Consensus 36 LgiLLliGCWYckRRSGY 53 (118)
T PF14991_consen 36 LGILLLIGCWYCKRRSGY 53 (118)
T ss_dssp ------------------
T ss_pred HHHHHHHhheeeeecchh
Confidence 33344444554 554443
No 127
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=33.80 E-value=25 Score=23.68 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=9.8
Q ss_pred HHHHHHHhheeEeccccccC
Q 045649 706 LICLIGFKVLFQQRKDSAKQ 725 (725)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~ 725 (725)
+.+.+.+++++.||.++.+|
T Consensus 23 igm~~~~~~~F~~k~~~~~~ 42 (42)
T PF11346_consen 23 IGMGVFFIRYFIRKMKEDEK 42 (42)
T ss_pred HHHHHHHHHHHHHHHcccCC
Confidence 33444444555555555443
No 128
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=32.37 E-value=33 Score=20.08 Aligned_cols=11 Identities=36% Similarity=0.480 Sum_probs=6.3
Q ss_pred CCCCEEeCCCC
Q 045649 131 SELQYLDLGSN 141 (725)
Q Consensus 131 ~~L~~L~Ls~n 141 (725)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555655555
No 129
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=29.74 E-value=33 Score=24.00 Aligned_cols=16 Identities=19% Similarity=-0.025 Sum_probs=6.1
Q ss_pred HHHHHHHHHhheeEec
Q 045649 704 ILLICLIGFKVLFQQR 719 (725)
Q Consensus 704 ~~~~~~~~~~~~~~~~ 719 (725)
++++++.+++..-.|+
T Consensus 23 ~vlfi~Gi~iils~kc 38 (50)
T PF02038_consen 23 GVLFILGILIILSGKC 38 (50)
T ss_dssp HHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHcCcc
Confidence 3333333333333333
No 130
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=29.61 E-value=59 Score=22.23 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=23.7
Q ss_pred CchhHHHHHHHHHHH--hhhhc--ccCCCHHHHHHHHHHHHhcc
Q 045649 1 MGISILNILILSLLL--NLSHS--ISSDSTKEALALLKWKRSLQ 40 (725)
Q Consensus 1 ~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~ll~~k~~~~ 40 (725)
|-++.+-+++++++. .+.+. ...+..+|++||++-++.+.
T Consensus 1 mfiawywivli~lv~~gy~~hmkrycrafrqdrdallear~kl~ 44 (54)
T PF13260_consen 1 MFIAWYWIVLIVLVVVGYFCHMKRYCRAFRQDRDALLEARNKLF 44 (54)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 566666453333322 23432 33456789999999887664
No 131
>PHA03265 envelope glycoprotein D; Provisional
Probab=29.30 E-value=19 Score=36.35 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=7.6
Q ss_pred HHHhheeEecccccc
Q 045649 710 IGFKVLFQQRKDSAK 724 (725)
Q Consensus 710 ~~~~~~~~~~~~~~~ 724 (725)
++++++.||||.++|
T Consensus 366 ~il~~~~rr~k~~~k 380 (402)
T PHA03265 366 VILYVCLRRKKELKK 380 (402)
T ss_pred HHHHHHhhhhhhhhh
Confidence 334555556555444
No 132
>PTZ00087 thrombosponding-related protein; Provisional
Probab=29.02 E-value=48 Score=32.17 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=16.3
Q ss_pred eehHHHHHHHHHHHHHHHhheeEecccc
Q 045649 695 IMFSSLMMVILLICLIGFKVLFQQRKDS 722 (725)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (725)
+.+++.-+++++.|+++++.+|.+||..
T Consensus 298 i~~i~~piv~vi~v~~ily~ify~~k~~ 325 (340)
T PTZ00087 298 ILIILLPIVLIICVMGILYHIFYKKKGA 325 (340)
T ss_pred EeeeehhHHHHHHHHHHHHHHhhhccch
Confidence 3333344455566666677777776653
No 133
>PF15345 TMEM51: Transmembrane protein 51
Probab=27.63 E-value=55 Score=31.36 Aligned_cols=20 Identities=5% Similarity=0.172 Sum_probs=9.9
Q ss_pred HHHHHHHHHhheeEeccccc
Q 045649 704 ILLICLIGFKVLFQQRKDSA 723 (725)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~ 723 (725)
.++++++.++..+|.|||++
T Consensus 68 Gv~LLLLSICL~IR~KRr~r 87 (233)
T PF15345_consen 68 GVALLLLSICLSIRDKRRRR 87 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444555555555443
No 134
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.90 E-value=33 Score=37.38 Aligned_cols=64 Identities=31% Similarity=0.258 Sum_probs=30.6
Q ss_pred CCCCCcEEEccCCcccccc--hhhhhcccCCCeeeCcCCcCCcCCchhhhcC--CCCCEEeCCCCCCC
Q 045649 537 SLTELQYIDLSANKLRSWI--PKSIANLLKLYYLNLSNNQFSQKIPIEVEKL--IHLSELDLSYNFLD 600 (725)
Q Consensus 537 ~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~Ls~N~l~ 600 (725)
+.+.+..+.|++|++.... ..--...++|+.|+|++|...-....++..+ ..|++|-+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 3455667777777765431 1111223566667777662111111222222 23455666666653
No 135
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=25.97 E-value=23 Score=38.28 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhheeEecccc
Q 045649 703 VILLICLIGFKVLFQQRKDS 722 (725)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~ 722 (725)
+++++++.++++..+||+..
T Consensus 366 vVv~viv~vc~~~rrrR~~~ 385 (439)
T PF02480_consen 366 VVVGVIVWVCLRCRRRRRQR 385 (439)
T ss_dssp --------------------
T ss_pred HHHHHHhheeeeehhccccc
Confidence 33344445556666555543
No 136
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=25.54 E-value=36 Score=26.30 Aligned_cols=8 Identities=13% Similarity=0.160 Sum_probs=5.1
Q ss_pred CCCCCCcc
Q 045649 66 AKLSPCAW 73 (725)
Q Consensus 66 ~~~~~c~w 73 (725)
...+||+|
T Consensus 60 ~~~~CC~~ 67 (75)
T PF02950_consen 60 RNSECCSG 67 (75)
T ss_dssp TTTCBSSS
T ss_pred CCCCCCCC
Confidence 33478887
No 137
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=25.46 E-value=58 Score=27.84 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=0.0
Q ss_pred eehHHHHHHHHHHHHHHHhheeEecc
Q 045649 695 IMFSSLMMVILLICLIGFKVLFQQRK 720 (725)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (725)
+++++++.+++..+++.++.++||+|
T Consensus 105 ~il~il~~i~is~~~~~~yr~~r~~~ 130 (139)
T PHA03099 105 GIVLVLVGIIITCCLLSVYRFTRRTK 130 (139)
T ss_pred HHHHHHHHHHHHHHHHhhheeeeccc
No 138
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=25.43 E-value=16 Score=34.39 Aligned_cols=24 Identities=4% Similarity=0.175 Sum_probs=11.8
Q ss_pred cCCCceEEeehHHHHHHHHHHHHH
Q 045649 687 ASRKKWVVIMFSSLMMVILLICLI 710 (725)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~ 710 (725)
.......++.-+++|+++++++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~ 59 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVL 59 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHH
Confidence 344444454444445555555554
No 139
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=25.40 E-value=73 Score=25.43 Aligned_cols=19 Identities=11% Similarity=0.385 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhheeEeccc
Q 045649 703 VILLICLIGFKVLFQQRKD 721 (725)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~ 721 (725)
++++.+++.+.++..++++
T Consensus 62 a~lv~t~~G~g~y~~~kk~ 80 (85)
T TIGR01495 62 ALLVGAGVGLGYYYKKKNK 80 (85)
T ss_pred HHHHHHHHHHhhhhhcccc
Confidence 3334455555565555544
No 140
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.31 E-value=43 Score=44.03 Aligned_cols=33 Identities=36% Similarity=0.336 Sum_probs=29.2
Q ss_pred eCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCc
Q 045649 569 NLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDE 601 (725)
Q Consensus 569 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 601 (725)
||++|+|+...+..|..+++|+.|+|++|++.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999998878889999999999999998853
No 141
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.38 E-value=36 Score=29.23 Aligned_cols=17 Identities=0% Similarity=0.063 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhheeEec
Q 045649 703 VILLICLIGFKVLFQQR 719 (725)
Q Consensus 703 ~~~~~~~~~~~~~~~~~ 719 (725)
+++++++++++.-.++|
T Consensus 78 Ig~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 33333444444444443
No 142
>TIGR03024 arch_pef_cterm PEF-C-terminal archaeal protein sorting domain. This domain, distantly related to the PEP-Cterm domain described in model TIGR02595, is found in Methanosarcina mazei in four different proteins, as well as in other archaea such as Methanococcoides burtonii. Several proteins with this domain have their genes only a short distance from a distant homology of EpsH, a proposed integral membrane transpeptidase.
Probab=24.17 E-value=51 Score=19.61 Aligned_cols=8 Identities=38% Similarity=0.708 Sum_probs=3.3
Q ss_pred hheeEecc
Q 045649 713 KVLFQQRK 720 (725)
Q Consensus 713 ~~~~~~~~ 720 (725)
.++++|||
T Consensus 18 ~~i~~rrK 25 (26)
T TIGR03024 18 IVILRRRK 25 (26)
T ss_pred HHHHhhcc
Confidence 33444443
No 143
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.45 E-value=39 Score=36.86 Aligned_cols=37 Identities=32% Similarity=0.296 Sum_probs=19.2
Q ss_pred CCCCCCEEECcCCcccccc--CccccCCCCCcEEeCCCc
Q 045649 441 YHPNLTFLDFSQNNFYGEI--SFNWRNFPKLCTFNASMN 477 (725)
Q Consensus 441 ~~~~L~~L~ls~n~l~~~~--~~~~~~~~~L~~L~l~~n 477 (725)
+.+.+..+.+++|++.... ..--...|+|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3456667777777664321 111123455555555555
No 144
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=22.63 E-value=91 Score=27.33 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhheeEeccccc
Q 045649 702 MVILLICLIGFKVLFQQRKDSA 723 (725)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~ 723 (725)
+++++.+++.+..++.+.|++|
T Consensus 74 mgvva~i~icvCmc~kn~rgsR 95 (155)
T PF10873_consen 74 MGVVAGIAICVCMCMKNSRGSR 95 (155)
T ss_pred HHHHHHHHHHHhhhhhcCCCcc
Confidence 3444444444444444444433
No 145
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=22.53 E-value=1.3e+02 Score=23.12 Aligned_cols=10 Identities=0% Similarity=-0.007 Sum_probs=3.9
Q ss_pred EEeehHHHHH
Q 045649 693 VVIMFSSLMM 702 (725)
Q Consensus 693 ~~~~~~~~~~ 702 (725)
..+++++..+
T Consensus 30 ~avaVviPl~ 39 (74)
T PF11857_consen 30 NAVAVVIPLV 39 (74)
T ss_pred eEEEEeHHHH
Confidence 3344444433
No 146
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.44 E-value=52 Score=33.16 Aligned_cols=14 Identities=29% Similarity=0.740 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhhee
Q 045649 703 VILLICLIGFKVLF 716 (725)
Q Consensus 703 ~~~~~~~~~~~~~~ 716 (725)
.+++++++.+++.+
T Consensus 240 ~v~ll~l~Gii~~~ 253 (281)
T PF12768_consen 240 TVFLLVLIGIILAY 253 (281)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333443333333
No 147
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=22.36 E-value=58 Score=32.39 Aligned_cols=9 Identities=11% Similarity=0.479 Sum_probs=4.1
Q ss_pred CCCceEEee
Q 045649 688 SRKKWVVIM 696 (725)
Q Consensus 688 ~~~~~~~~~ 696 (725)
....|.+++
T Consensus 209 ~~~~W~iv~ 217 (278)
T PF06697_consen 209 RSWWWKIVV 217 (278)
T ss_pred cceeEEEEE
Confidence 344555443
No 148
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=21.96 E-value=54 Score=25.67 Aligned_cols=8 Identities=13% Similarity=0.364 Sum_probs=3.2
Q ss_pred HHhheeEe
Q 045649 711 GFKVLFQQ 718 (725)
Q Consensus 711 ~~~~~~~~ 718 (725)
++++++.|
T Consensus 35 ~vvL~C~r 42 (87)
T PF11980_consen 35 GVVLYCHR 42 (87)
T ss_pred HHHHhhhh
Confidence 34444433
No 149
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=21.73 E-value=2.2e+02 Score=37.25 Aligned_cols=21 Identities=19% Similarity=0.036 Sum_probs=13.9
Q ss_pred CCCCCeeeCcCCcccccCCCC
Q 045649 634 MHNLSHIDISYNELQGPIPNS 654 (725)
Q Consensus 634 l~~L~~L~ls~N~l~g~ip~~ 654 (725)
|..=-+-...+|.+.|.+|.+
T Consensus 3911 C~~GgtCip~~n~f~CnC~~g 3931 (4289)
T KOG1219|consen 3911 CLTGGTCIPFYNGFLCNCPNG 3931 (4289)
T ss_pred CCCCCEEEecCCCeeEeCCCC
Confidence 333445677788888888765
No 150
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=21.56 E-value=52 Score=34.16 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhheeEeccc
Q 045649 703 VILLICLIGFKVLFQQRKD 721 (725)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~ 721 (725)
-++++++..++++++|+|+
T Consensus 330 P~l~li~Ggl~v~~~r~r~ 348 (350)
T PF15065_consen 330 PLLLLILGGLYVCLRRRRK 348 (350)
T ss_pred HHHHHHHhhheEEEecccc
Confidence 3334444444444444443
No 151
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=20.38 E-value=33 Score=28.47 Aligned_cols=26 Identities=8% Similarity=0.038 Sum_probs=12.8
Q ss_pred ceEEeehHHHHHHHHHHHHHHHhhee
Q 045649 691 KWVVIMFSSLMMVILLICLIGFKVLF 716 (725)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (725)
......+++.+++++++++++++.++
T Consensus 57 ~~~~~~iili~lls~v~IlVily~Iy 82 (101)
T PF06024_consen 57 KQNNGNIILISLLSFVCILVILYAIY 82 (101)
T ss_pred ccccccchHHHHHHHHHHHHHHhhhe
Confidence 44444555555555555555444443
Done!