Query 045649
Match_columns 725
No_of_seqs 769 out of 4565
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 06:39:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1E-91 3.5E-96 817.4 48.5 641 18-682 3-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.9E-72 6.6E-77 655.1 42.0 560 82-647 100-739 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 5.3E-64 1.8E-68 579.1 48.5 572 81-653 24-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-62 4.3E-67 567.6 49.8 581 87-671 9-625 (680)
5 3t6q_A CD180 antigen; protein- 100.0 6.2E-59 2.1E-63 529.6 45.7 525 108-655 34-567 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.8E-58 6.3E-63 525.7 40.8 518 81-628 32-564 (606)
7 3j0a_A TOLL-like receptor 5; m 100.0 4.1E-58 1.4E-62 540.1 40.5 551 87-672 9-583 (844)
8 3vq2_A TLR4, TOLL-like recepto 100.0 4.8E-58 1.7E-62 522.3 39.8 539 86-655 15-565 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2E-56 6.8E-61 509.0 37.4 520 81-628 31-562 (606)
10 4eco_A Uncharacterized protein 100.0 4.1E-58 1.4E-62 522.3 19.8 498 22-553 25-601 (636)
11 3j0a_A TOLL-like receptor 5; m 100.0 4.1E-55 1.4E-59 514.5 34.2 528 69-627 12-563 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 1E-54 3.4E-59 501.6 31.3 511 21-576 263-864 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 7.7E-53 2.6E-57 476.1 36.0 521 109-657 9-540 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 6.3E-51 2.2E-55 460.4 37.2 498 107-629 28-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 5.9E-50 2E-54 450.1 33.4 496 108-657 6-519 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 7.1E-50 2.4E-54 449.5 32.5 497 70-628 3-514 (549)
17 4eco_A Uncharacterized protein 100.0 3.8E-50 1.3E-54 456.8 19.0 465 107-626 81-602 (636)
18 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-47 4.4E-52 439.2 38.3 518 107-654 52-586 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-47 4.5E-52 427.8 28.8 463 134-654 3-487 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-47 4.8E-52 427.6 28.6 453 110-627 3-484 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 1.1E-47 3.6E-52 443.1 25.3 466 131-648 323-864 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 3.9E-44 1.3E-48 410.4 40.4 510 82-625 52-581 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.9E-44 2.7E-48 400.6 30.1 468 129-656 29-518 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.4E-44 3.2E-48 400.0 27.1 462 105-628 29-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 2.1E-41 7.3E-46 371.2 28.8 395 229-657 12-417 (455)
26 1ogq_A PGIP-2, polygalacturona 100.0 2.3E-42 7.9E-47 357.9 20.0 292 23-334 2-302 (313)
27 3v47_A TOLL-like receptor 5B a 100.0 1E-40 3.5E-45 365.8 30.5 390 205-628 12-412 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 2.9E-41 1E-45 366.9 22.8 423 129-654 9-435 (454)
29 1jl5_A Outer protein YOPM; leu 100.0 4.5E-41 1.6E-45 365.4 23.7 428 103-633 7-438 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 5.4E-38 1.8E-42 341.6 27.3 364 191-654 30-393 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 9.7E-38 3.3E-42 339.5 27.6 324 143-553 30-353 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 6.3E-38 2.2E-42 345.5 25.0 325 348-672 33-360 (477)
33 1o6v_A Internalin A; bacterial 100.0 1.5E-36 5.3E-41 332.9 33.6 345 226-625 45-389 (466)
34 1o6v_A Internalin A; bacterial 100.0 1.9E-36 6.4E-41 332.2 32.4 345 250-649 45-389 (466)
35 2id5_A Lingo-1, leucine rich r 100.0 3.3E-35 1.1E-39 323.8 29.1 320 110-456 14-333 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 7.6E-35 2.6E-39 312.0 26.2 311 104-432 42-352 (390)
37 3oja_B Anopheles plasmodium-re 100.0 2.6E-34 8.8E-39 324.8 28.1 311 104-432 48-358 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 2.8E-34 9.6E-39 307.6 25.0 333 298-672 44-378 (390)
39 3oja_B Anopheles plasmodium-re 100.0 2.3E-34 7.8E-39 325.2 25.0 332 298-672 50-384 (597)
40 4fcg_A Uncharacterized protein 100.0 4.2E-35 1.4E-39 305.1 16.5 283 22-335 22-313 (328)
41 1ogq_A PGIP-2, polygalacturona 100.0 7.7E-35 2.6E-39 301.4 18.2 256 419-678 50-312 (313)
42 4fmz_A Internalin; leucine ric 100.0 4.3E-33 1.5E-37 293.6 28.8 307 295-648 40-346 (347)
43 4fmz_A Internalin; leucine ric 100.0 7.5E-33 2.6E-37 291.7 29.4 307 271-624 40-346 (347)
44 2ft3_A Biglycan; proteoglycan, 100.0 2.4E-31 8.2E-36 278.1 26.9 288 348-646 34-331 (332)
45 2ft3_A Biglycan; proteoglycan, 100.0 5.7E-31 2E-35 275.3 27.1 295 108-453 34-330 (332)
46 1xku_A Decorin; proteoglycan, 100.0 6.4E-31 2.2E-35 274.7 27.0 289 324-646 32-330 (330)
47 1xku_A Decorin; proteoglycan, 100.0 1E-30 3.6E-35 273.1 28.0 224 107-337 52-277 (330)
48 1z7x_W Ribonuclease inhibitor; 100.0 3.8E-35 1.3E-39 322.0 -6.5 378 251-648 3-440 (461)
49 1z7x_W Ribonuclease inhibitor; 100.0 7.8E-35 2.7E-39 319.6 -4.4 385 227-630 3-446 (461)
50 3ogk_B Coronatine-insensitive 100.0 2.8E-32 9.6E-37 309.2 0.8 347 297-645 162-548 (592)
51 2z80_A TOLL-like receptor 2, v 100.0 5.1E-30 1.7E-34 270.5 17.5 280 69-362 28-316 (353)
52 2z66_A Variable lymphocyte rec 100.0 2.4E-29 8.1E-34 259.9 18.9 251 71-337 7-262 (306)
53 2z66_A Variable lymphocyte rec 100.0 4.5E-29 1.5E-33 257.8 19.8 251 375-653 11-266 (306)
54 2z80_A TOLL-like receptor 2, v 100.0 1.4E-29 4.7E-34 267.2 16.1 277 375-654 35-320 (353)
55 3ogk_B Coronatine-insensitive 100.0 3E-32 1E-36 309.0 -4.8 424 172-621 66-548 (592)
56 4fcg_A Uncharacterized protein 100.0 1.2E-28 4E-33 256.5 18.8 236 105-360 79-314 (328)
57 3zyi_A Leucine-rich repeat-con 100.0 1.9E-27 6.4E-32 259.5 26.1 231 420-652 76-307 (452)
58 1ozn_A Reticulon 4 receptor; N 100.0 1.1E-27 3.8E-32 244.5 22.0 254 85-343 14-268 (285)
59 1ozn_A Reticulon 4 receptor; N 100.0 6.4E-28 2.2E-32 246.3 18.7 212 443-654 32-244 (285)
60 3zyj_A Leucine-rich repeat-con 100.0 3.8E-27 1.3E-31 256.2 25.6 231 420-652 65-296 (440)
61 3zyi_A Leucine-rich repeat-con 100.0 1.1E-26 3.9E-31 253.4 26.2 245 375-624 58-303 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 1.1E-26 3.6E-31 252.7 25.6 245 375-624 47-292 (440)
63 1wwl_A Monocyte differentiatio 99.9 4.8E-29 1.6E-33 258.0 4.2 250 103-385 39-310 (312)
64 1wwl_A Monocyte differentiatio 99.9 4.4E-29 1.5E-33 258.2 2.9 255 368-649 40-310 (312)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.6E-28 5.6E-33 254.5 6.3 268 348-653 11-281 (317)
66 3o53_A Protein LRIM1, AGAP0063 99.9 5.5E-28 1.9E-32 250.6 8.2 268 325-630 12-282 (317)
67 2o6q_A Variable lymphocyte rec 99.9 8.3E-26 2.8E-30 228.5 23.3 215 69-287 3-217 (270)
68 2p1m_B Transport inhibitor res 99.9 3.2E-29 1.1E-33 284.2 -3.6 434 198-652 61-548 (594)
69 2p1m_B Transport inhibitor res 99.9 1.8E-29 6.2E-34 286.2 -8.5 446 158-623 46-543 (594)
70 3g06_A SSPH2 (leucine-rich rep 99.9 9.4E-26 3.2E-30 252.2 21.5 88 69-168 20-114 (622)
71 3oja_A Leucine-rich immune mol 99.9 4.8E-27 1.6E-31 257.6 10.6 233 397-643 36-270 (487)
72 2z62_A TOLL-like receptor 4, v 99.9 2E-25 6.9E-30 226.7 21.1 214 443-657 28-246 (276)
73 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-24 3.7E-29 243.6 27.4 264 324-631 41-304 (622)
74 3oja_A Leucine-rich immune mol 99.9 3.4E-26 1.2E-30 250.9 11.6 234 372-619 35-270 (487)
75 2o6q_A Variable lymphocyte rec 99.9 3.1E-24 1.1E-28 216.9 23.3 207 444-653 17-223 (270)
76 2z62_A TOLL-like receptor 4, v 99.9 3.9E-24 1.3E-28 217.1 20.5 207 420-627 29-240 (276)
77 1p9a_G Platelet glycoprotein I 99.9 1.9E-23 6.5E-28 213.0 21.2 204 441-651 8-211 (290)
78 3rfs_A Internalin B, repeat mo 99.9 7.7E-24 2.6E-28 214.2 16.9 203 441-654 39-241 (272)
79 2ast_B S-phase kinase-associat 99.9 1.2E-25 4.1E-30 235.5 3.1 266 69-344 35-314 (336)
80 3rfs_A Internalin B, repeat mo 99.9 1.6E-23 5.3E-28 212.0 18.1 210 104-348 38-247 (272)
81 3m19_A Variable lymphocyte rec 99.9 9E-23 3.1E-27 203.7 19.6 190 69-264 3-192 (251)
82 4glp_A Monocyte differentiatio 99.9 1.3E-23 4.4E-28 217.0 13.7 224 420-649 65-308 (310)
83 1p9a_G Platelet glycoprotein I 99.9 2.3E-22 7.7E-27 205.0 22.4 204 102-312 5-208 (290)
84 3goz_A Leucine-rich repeat-con 99.9 1.4E-24 4.7E-29 229.4 6.1 255 376-650 3-299 (362)
85 2ca6_A RAN GTPase-activating p 99.9 1.1E-24 3.6E-29 232.7 2.8 239 414-652 27-320 (386)
86 3m19_A Variable lymphocyte rec 99.9 3.4E-22 1.2E-26 199.5 20.2 183 468-653 15-197 (251)
87 4glp_A Monocyte differentiatio 99.9 4.5E-23 1.5E-27 212.9 13.3 225 131-361 64-308 (310)
88 2xwt_C Thyrotropin receptor; s 99.9 1.7E-22 5.7E-27 200.3 16.9 197 107-309 31-236 (239)
89 2ast_B S-phase kinase-associat 99.9 5.7E-24 2E-28 222.7 6.5 230 420-654 71-312 (336)
90 3goz_A Leucine-rich repeat-con 99.9 3.4E-24 1.1E-28 226.5 3.3 259 351-629 2-302 (362)
91 2ca6_A RAN GTPase-activating p 99.9 2.8E-24 9.4E-29 229.5 1.3 246 363-628 24-320 (386)
92 2xwt_C Thyrotropin receptor; s 99.9 2E-22 7E-27 199.7 14.0 197 444-646 32-237 (239)
93 1h6u_A Internalin H; cell adhe 99.9 1.5E-21 5.1E-26 201.0 18.1 191 443-649 41-231 (308)
94 1h6u_A Internalin H; cell adhe 99.9 1.8E-21 6.3E-26 200.3 17.6 193 393-625 39-231 (308)
95 2o6s_A Variable lymphocyte rec 99.9 4.2E-21 1.4E-25 185.8 17.6 185 70-276 6-190 (208)
96 3cvr_A Invasion plasmid antige 99.8 1.6E-20 5.3E-25 207.4 15.5 195 72-296 49-251 (571)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-20 4.7E-25 183.5 12.3 159 494-655 14-173 (220)
98 4ay9_X Follicle-stimulating ho 99.8 7E-20 2.4E-24 192.3 17.9 200 134-337 12-216 (350)
99 4ay9_X Follicle-stimulating ho 99.8 4.8E-20 1.6E-24 193.5 16.1 240 374-621 12-256 (350)
100 2o6s_A Variable lymphocyte rec 99.8 1.5E-19 5.1E-24 174.8 17.6 110 131-240 28-137 (208)
101 2v9t_B SLIT homolog 2 protein 99.8 3E-20 1E-24 181.0 12.6 157 494-653 14-170 (220)
102 3cvr_A Invasion plasmid antige 99.8 2E-19 6.8E-24 198.5 18.3 187 108-322 60-253 (571)
103 3e6j_A Variable lymphocyte rec 99.8 6.1E-19 2.1E-23 173.0 16.7 157 493-653 21-177 (229)
104 2xot_A Amphoterin-induced prot 99.8 1.9E-19 6.7E-24 189.7 13.4 178 471-651 22-205 (361)
105 1h6t_A Internalin B; cell adhe 99.8 6.6E-19 2.3E-23 179.5 15.3 170 441-624 44-213 (291)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-18 5.7E-23 168.6 16.1 155 471-628 15-170 (220)
107 3e6j_A Variable lymphocyte rec 99.8 3.5E-18 1.2E-22 167.6 18.3 157 69-241 17-173 (229)
108 2v9t_B SLIT homolog 2 protein 99.8 2.3E-18 7.9E-23 167.6 15.9 152 471-625 15-166 (220)
109 1h6t_A Internalin B; cell adhe 99.8 1.1E-18 3.6E-23 178.0 14.0 172 464-649 43-214 (291)
110 4b8c_D Glucose-repressible alc 99.8 3E-20 1E-24 212.9 2.6 230 25-285 130-369 (727)
111 1m9s_A Internalin B; cell inva 99.8 2E-18 6.9E-23 192.7 16.2 173 103-289 39-211 (605)
112 1w8a_A SLIT protein; signaling 99.8 1.4E-18 4.8E-23 165.3 11.4 153 518-673 11-167 (192)
113 1m9s_A Internalin B; cell inva 99.8 3.7E-18 1.3E-22 190.6 16.3 171 416-600 40-210 (605)
114 2xot_A Amphoterin-induced prot 99.8 2.8E-18 9.6E-23 180.8 13.9 176 422-600 21-202 (361)
115 4ezg_A Putative uncharacterize 99.7 3.5E-18 1.2E-22 163.5 11.3 154 489-649 42-195 (197)
116 4ezg_A Putative uncharacterize 99.7 1.1E-17 3.6E-22 160.1 12.3 154 465-625 42-195 (197)
117 1xeu_A Internalin C; cellular 99.7 4.7E-18 1.6E-22 170.3 9.1 168 443-625 19-186 (263)
118 1dce_A Protein (RAB geranylger 99.7 3.7E-20 1.3E-24 205.6 -6.8 122 516-642 442-567 (567)
119 3sb4_A Hypothetical leucine ri 99.7 5E-18 1.7E-22 176.6 8.1 221 418-641 100-327 (329)
120 1dce_A Protein (RAB geranylger 99.7 3.8E-20 1.3E-24 205.5 -9.7 153 480-654 398-552 (567)
121 1xeu_A Internalin C; cellular 99.7 1.7E-17 5.7E-22 166.3 9.1 167 468-649 20-186 (263)
122 4b8c_D Glucose-repressible alc 99.7 3.2E-18 1.1E-22 196.2 3.9 177 395-581 173-359 (727)
123 1w8a_A SLIT protein; signaling 99.7 4.4E-17 1.5E-21 154.9 11.0 132 494-628 11-143 (192)
124 3sb4_A Hypothetical leucine ri 99.7 8.4E-18 2.9E-22 174.8 6.2 222 394-618 100-328 (329)
125 2wfh_A SLIT homolog 2 protein 99.7 7E-17 2.4E-21 153.5 11.7 132 518-653 13-144 (193)
126 2ell_A Acidic leucine-rich nuc 99.7 2E-16 7E-21 147.0 12.1 130 517-648 26-160 (168)
127 2ell_A Acidic leucine-rich nuc 99.7 2E-16 6.8E-21 147.1 11.4 139 489-630 22-165 (168)
128 2je0_A Acidic leucine-rich nuc 99.7 1.5E-16 5.2E-21 144.6 10.3 127 515-643 17-148 (149)
129 2o6r_A Variable lymphocyte rec 99.7 5.9E-16 2E-20 145.2 13.5 134 517-653 9-142 (177)
130 2je0_A Acidic leucine-rich nuc 99.7 3E-16 1E-20 142.7 10.8 128 491-620 17-149 (149)
131 4fdw_A Leucine rich hypothetic 99.6 7.3E-15 2.5E-19 155.8 21.6 217 421-646 159-381 (401)
132 4fdw_A Leucine rich hypothetic 99.6 1.3E-14 4.5E-19 153.9 20.5 242 372-624 136-383 (401)
133 4fs7_A Uncharacterized protein 99.6 2.3E-14 7.8E-19 152.8 22.4 101 439-544 293-393 (394)
134 2wfh_A SLIT homolog 2 protein 99.6 3.1E-15 1.1E-19 142.1 13.5 128 494-625 13-140 (193)
135 2o6r_A Variable lymphocyte rec 99.6 4.4E-15 1.5E-19 139.2 13.6 133 493-628 9-141 (177)
136 4fs7_A Uncharacterized protein 99.6 3.1E-14 1.1E-18 151.8 20.6 316 287-643 59-374 (394)
137 1a9n_A U2A', U2A'; complex (nu 99.6 6.4E-15 2.2E-19 137.9 9.6 134 511-649 15-154 (176)
138 1ds9_A Outer arm dynein; leuci 99.5 6.8E-17 2.3E-21 154.6 -5.4 132 510-648 43-185 (198)
139 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-14 4E-19 136.1 9.2 135 487-625 15-154 (176)
140 3g39_A Variable lymphocyte rec 99.5 3.7E-14 1.3E-18 131.6 10.8 110 541-653 11-120 (170)
141 1ds9_A Outer arm dynein; leuci 99.5 1.4E-16 4.9E-21 152.3 -5.9 151 467-624 18-185 (198)
142 2r9u_A Variable lymphocyte rec 99.5 1.4E-13 4.6E-18 128.2 11.0 108 542-652 15-122 (174)
143 3g39_A Variable lymphocyte rec 99.5 3E-13 1E-17 125.4 12.0 108 517-627 11-118 (170)
144 4gt6_A Cell surface protein; l 99.4 2E-11 6.7E-16 130.0 25.6 333 266-647 54-390 (394)
145 2r9u_A Variable lymphocyte rec 99.4 8.2E-13 2.8E-17 122.9 12.2 106 518-626 15-120 (174)
146 4gt6_A Cell surface protein; l 99.4 3.9E-11 1.3E-15 127.7 24.9 109 148-259 56-168 (394)
147 3un9_A NLR family member X1; l 99.3 9.7E-14 3.3E-18 145.8 -1.1 159 467-625 72-253 (372)
148 3un9_A NLR family member X1; l 99.3 8.6E-14 2.9E-18 146.2 -2.9 165 443-607 72-259 (372)
149 2ifg_A High affinity nerve gro 99.3 7.2E-12 2.5E-16 131.0 10.5 104 519-625 12-117 (347)
150 2ifg_A High affinity nerve gro 99.2 1.4E-11 4.7E-16 128.9 9.4 104 495-601 12-117 (347)
151 4h09_A Hypothetical leucine ri 99.2 4.7E-09 1.6E-13 111.0 24.5 301 318-643 41-341 (379)
152 4h09_A Hypothetical leucine ri 99.1 6E-09 2.1E-13 110.2 24.9 144 391-539 213-356 (379)
153 2ra8_A Uncharacterized protein 98.9 1.3E-09 4.4E-14 113.3 5.9 58 463-523 168-227 (362)
154 2ra8_A Uncharacterized protein 98.8 9E-10 3.1E-14 114.4 3.4 39 274-312 278-320 (362)
155 3rw6_A Nuclear RNA export fact 98.7 3.8E-11 1.3E-15 118.1 -11.3 66 152-219 167-236 (267)
156 1io0_A Tropomodulin; LRR prote 98.6 2.2E-08 7.6E-13 93.7 4.6 92 509-600 30-136 (185)
157 3rw6_A Nuclear RNA export fact 98.6 2.5E-08 8.6E-13 98.0 3.8 96 544-641 148-257 (267)
158 1io0_A Tropomodulin; LRR prote 98.5 3.6E-08 1.2E-12 92.3 4.2 114 535-648 32-164 (185)
159 3e4g_A ATP synthase subunit S, 98.0 1.9E-06 6.4E-11 78.4 2.5 83 540-622 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.9 3.2E-06 1.1E-10 76.8 2.6 82 517-598 63-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 0.0001 3.6E-09 68.2 5.1 87 561-647 68-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00021 7.3E-09 66.1 4.3 111 513-623 39-169 (197)
163 3rfe_A Platelet glycoprotein I 97.1 0.001 3.4E-08 57.5 6.7 60 591-652 12-72 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0032 1.1E-07 54.3 6.3 56 567-624 12-68 (130)
165 2ks1_B Epidermal growth factor 95.0 0.0084 2.9E-07 39.6 1.5 14 712-725 31-44 (44)
166 2l2t_A Receptor tyrosine-prote 93.8 0.018 6.1E-07 37.9 0.9 13 713-725 31-43 (44)
167 2jwa_A Receptor tyrosine-prote 93.2 0.021 7.1E-07 37.5 0.6 13 713-725 32-44 (44)
168 2k9y_A Ephrin type-A receptor 72.3 1.8 6.2E-05 28.1 1.9 8 712-719 32-39 (41)
169 2k1k_A Ephrin type-A receptor 72.1 1.2 4E-05 28.4 0.8 25 694-719 13-37 (38)
170 1iij_A ERBB-2 receptor protein 54.3 2.4 8.3E-05 26.2 -0.2 7 714-720 28-34 (35)
171 2lz0_A Uncharacterized protein 53.5 40 0.0014 26.7 6.9 15 173-187 14-28 (100)
172 2lz0_A Uncharacterized protein 53.0 41 0.0014 26.7 6.9 40 148-188 13-52 (100)
173 2l6w_A Beta-type platelet-deri 52.7 4.1 0.00014 25.6 0.0 7 714-720 28-34 (39)
174 2klu_A T-cell surface glycopro 37.1 16 0.00055 26.0 1.8 8 717-724 35-42 (70)
175 2l2t_A Receptor tyrosine-prote 31.1 20 0.00069 23.5 1.4 18 706-723 21-38 (44)
176 1afo_A Glycophorin A; integral 27.3 16 0.00055 22.9 0.4 26 694-719 12-37 (40)
177 2klu_A T-cell surface glycopro 26.0 29 0.00099 24.7 1.5 28 698-725 13-40 (70)
178 1cd1_A CD1, MCD1D.1; immunolog 22.7 18 0.00062 35.9 0.0 10 713-722 302-311 (315)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1e-91 Score=817.35 Aligned_cols=641 Identities=31% Similarity=0.491 Sum_probs=554.0
Q ss_pred hhcccCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccceeeCCCCCEEEEEcCCCCCccc
Q 045649 18 SHSISSDSTKEALALLKWKRSLQNQNSSLLTSWTLYPANATNVPSYSKAKLSPCAWVGISCNQAERVISINLSSMGLNGT 97 (725)
Q Consensus 18 ~~~~~~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~l~~~ 97 (725)
+++++++.++|++||++||+++. ||. .+++|+ .++ +||+|.||+|+ .+||++++|++.++.|.
T Consensus 3 ~~~~~~~~~~~~~all~~k~~~~-~~~-~l~~W~----~~~----------~~C~w~gv~C~-~~~v~~L~L~~~~l~g~ 65 (768)
T 3rgz_A 3 QASPSQSLYREIHQLISFKDVLP-DKN-LLPDWS----SNK----------NPCTFDGVTCR-DDKVTSIDLSSKPLNVG 65 (768)
T ss_dssp -----CCHHHHHHHHHHHHTTCS-CTT-SSTTCC----TTS----------CGGGSTTEEEE-TTEEEEEECTTSCCCEE
T ss_pred cCccccCCHHHHHHHHHHHhhCC-Ccc-cccCCC----CCC----------CCcCCcceEEC-CCcEEEEECCCCCcCCc
Confidence 44556677899999999999998 555 899996 566 99999999998 79999999999999887
Q ss_pred ---cCc----------------------ccccCCCCCCEEECCCCCCCCCCcc--ccCCCCCCCEEeCCCCCCCccCCcc
Q 045649 98 ---LQE----------------------FAFSSFPHLVRLNLSFNIVFGTIPP--QVGNLSELQYLDLGSNQLTGVIPQE 150 (725)
Q Consensus 98 ---~~~----------------------~~l~~l~~L~~L~Ls~n~~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~ 150 (725)
+++ ..++.+++|++|||++|.+.|.+|. .++++++|++|++++|.+.+.+|..
T Consensus 66 ~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 145 (768)
T 3rgz_A 66 FSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 145 (768)
T ss_dssp HHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCC
T ss_pred cCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHH
Confidence 442 3566777788888888877777777 7778888888888888777777766
Q ss_pred C-cCCCCCCEEEccCCcCCcCCCcc---cCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCC
Q 045649 151 I-GHLNQLRSLYFDVNQLHGSIPPE---IGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNL 226 (725)
Q Consensus 151 ~-~~l~~L~~L~l~~n~l~~~~p~~---~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 226 (725)
+ .++++|++|++++|.+++..|.. +.++++|++|++++|.+.+..|. ..+++|++|++++|.+.+.+|. ++++
T Consensus 146 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l 222 (768)
T 3rgz_A 146 GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDC 222 (768)
T ss_dssp SCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTC
T ss_pred HhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccC
Confidence 5 67788888888888877777666 67778888888888877765543 7788888888888888877776 8888
Q ss_pred CCCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCccCCccCCccccCC-CCCCEEE
Q 045649 227 KSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNL-SSLTVMS 305 (725)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~ 305 (725)
++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|+
T Consensus 223 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~ 300 (768)
T 3rgz_A 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300 (768)
T ss_dssp CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred CCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence 88888888888888888888888888888888888888777765 78888888888888888888888765 8899999
Q ss_pred ccCCcCCCCCCcccccCCCCCcccccCccCCCcCccc-cCCCcccceeecccCccccccchhhccCC-cccEEecccCcc
Q 045649 306 LFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPAS-IGNLSSLRLLYLYNNGLYGFVPEEIGYLK-SIFELDLCTNRL 383 (725)
Q Consensus 306 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~ls~n~l 383 (725)
+++|.+++.+|..++.+++|++|++++|.+++.+|.. +..+++|++|++++|++++.+|..+..++ +|++|++++|.+
T Consensus 301 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l 380 (768)
T 3rgz_A 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380 (768)
T ss_dssp CCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEE
T ss_pred CcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCc
Confidence 9999988888888889999999999999988777765 88888999999999999888888888776 899999999998
Q ss_pred CccCCccCcC--CCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCc
Q 045649 384 SGAIPHSISN--LTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISF 461 (725)
Q Consensus 384 ~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 461 (725)
++.+|..+.. +++|+.|++++|.+++.+|..+.++++|++|++++|++++..|..+..+++|++|++++|.+++.+|.
T Consensus 381 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 460 (768)
T 3rgz_A 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460 (768)
T ss_dssp EEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred CCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH
Confidence 8888887776 78899999999999988999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCC
Q 045649 462 NWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTEL 541 (725)
Q Consensus 462 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 541 (725)
.+..+++|+.|++++|.+++.+|..+..+++|++|++++|++++.+|..++.+++|++|++++|++++.+|..+..+++|
T Consensus 461 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 540 (768)
T 3rgz_A 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEccCCcccccchhhh--------------------------------------------------------------
Q 045649 542 QYIDLSANKLRSWIPKSI-------------------------------------------------------------- 559 (725)
Q Consensus 542 ~~L~Ls~n~l~~~~~~~~-------------------------------------------------------------- 559 (725)
++|++++|++++.+|..+
T Consensus 541 ~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 620 (768)
T 3rgz_A 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620 (768)
T ss_dssp CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEE
T ss_pred CEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccccee
Confidence 999999999887776544
Q ss_pred --------hcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccc
Q 045649 560 --------ANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCF 631 (725)
Q Consensus 560 --------~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l 631 (725)
..+++|++|||++|+++|.+|.+++++++|++|+|++|+++|.+|..++++++|++|||++|+++|.+|..+
T Consensus 621 ~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp EEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred cccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH
Confidence 235679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCeeeCcCCcccccCCCCCCcCce---ecccCCCCCCCCCCCCCCCCCc
Q 045649 632 EGMHNLSHIDISYNELQGPIPNSTVFKDA---HVEGNKGLCGNVNGFPSCKAFT 682 (725)
Q Consensus 632 ~~l~~L~~L~ls~N~l~g~ip~~~~~~~~---~~~gn~~lc~~~~~~~~c~~~~ 682 (725)
..+++|++||+++|+++|.||..++|.++ +|.||+++||.|. ++|....
T Consensus 701 ~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l--~~C~~~~ 752 (768)
T 3rgz_A 701 SALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL--PRCDPSN 752 (768)
T ss_dssp GGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS--CCCCSCC
T ss_pred hCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC--cCCCCCc
Confidence 99999999999999999999999999887 7999999999985 4786543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.9e-72 Score=655.11 Aligned_cols=560 Identities=32% Similarity=0.440 Sum_probs=505.5
Q ss_pred CCEEEEEcCCCCCccccCc-ccccCCCCCCEEECCCCCCCCCCcccc-CCCCCCCEEeCCCCCCCccCCcc---CcCCCC
Q 045649 82 ERVISINLSSMGLNGTLQE-FAFSSFPHLVRLNLSFNIVFGTIPPQV-GNLSELQYLDLGSNQLTGVIPQE---IGHLNQ 156 (725)
Q Consensus 82 ~~v~~l~l~~~~l~~~~~~-~~l~~l~~L~~L~Ls~n~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~---~~~l~~ 156 (725)
.+++.|+|+++.+.|.++. ..++.+++|++|+|++|.+.+.+|..+ .++++|++|++++|++++..|.. +.++++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence 5789999999999988873 179999999999999999998888776 89999999999999999888877 889999
Q ss_pred CCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEccc
Q 045649 157 LRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSK 236 (725)
Q Consensus 157 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 236 (725)
|++|++++|.+.+..|. .++++|++|++++|.+++.+|. ++++++|++|++++|.+.+.+|..++++++|++|++++
T Consensus 180 L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256 (768)
T ss_dssp CCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred CCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence 99999999999877663 8899999999999999988777 99999999999999999989999999999999999999
Q ss_pred CcCcccCCcCccCCCCCceEEeecccccccCCccccCC-CCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCC
Q 045649 237 NQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNL-KSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFI 315 (725)
Q Consensus 237 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 315 (725)
|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..++.+++|++|++++|.+++.+
T Consensus 257 n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i 334 (768)
T 3rgz_A 257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334 (768)
T ss_dssp SCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence 9998877765 78899999999999998899888775 89999999999999889999999999999999999998888
Q ss_pred Ccc-cccCCCCCcccccCccCCCcCccccCCCc-ccceeecccCccccccchhhcc--CCcccEEecccCccCccCCccC
Q 045649 316 PPI-LGNLKSLSALGLHINQLNGVIPASIGNLS-SLRLLYLYNNGLYGFVPEEIGY--LKSIFELDLCTNRLSGAIPHSI 391 (725)
Q Consensus 316 ~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~ls~n~l~~~~~~~~ 391 (725)
|.. +..+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+.. +++|++|++++|.+++.+|..+
T Consensus 335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 414 (768)
T 3rgz_A 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414 (768)
T ss_dssp CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence 865 88899999999999999888888888877 8999999999998888887776 7889999999999998889899
Q ss_pred cCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcE
Q 045649 392 SNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCT 471 (725)
Q Consensus 392 ~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 471 (725)
..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|+.
T Consensus 415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494 (768)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence 99999999999999999889999999999999999999999989988989999999999999999889999999999999
Q ss_pred EeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcc-----------------
Q 045649 472 FNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLE----------------- 534 (725)
Q Consensus 472 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----------------- 534 (725)
|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence 999999999999999999999999999999999999999999999999999999888776654
Q ss_pred -----------------------------------------------------cCCCCCCcEEEccCCcccccchhhhhc
Q 045649 535 -----------------------------------------------------LGSLTELQYIDLSANKLRSWIPKSIAN 561 (725)
Q Consensus 535 -----------------------------------------------------l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 561 (725)
+..+++|++||+++|+++|.+|..+++
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence 334578999999999999999999999
Q ss_pred ccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeee
Q 045649 562 LLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHID 641 (725)
Q Consensus 562 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 641 (725)
+++|+.|+|++|+++|.+|..++++++|++|||++|+++|.+|..++++++|++||+++|+++|.+|.. ..+..+....
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~ 733 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAK 733 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGG
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999976 4455667777
Q ss_pred CcCCcc
Q 045649 642 ISYNEL 647 (725)
Q Consensus 642 ls~N~l 647 (725)
+.+|+-
T Consensus 734 ~~gN~~ 739 (768)
T 3rgz_A 734 FLNNPG 739 (768)
T ss_dssp GCSCTE
T ss_pred hcCCch
Confidence 888874
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.3e-64 Score=579.12 Aligned_cols=572 Identities=23% Similarity=0.266 Sum_probs=500.9
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEE
Q 045649 81 AERVISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSL 160 (725)
Q Consensus 81 ~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 160 (725)
..+++.|+++++.+++..+ ..+..+++|++|++++|.+.+..|..++++++|++|++++|.+++..+..|+++++|++|
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp CTTCSEEECCSSCCCCCCG-GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCCcEEECCCCCCCCcCH-HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 3579999999999887544 678999999999999999998889899999999999999999996655679999999999
Q ss_pred EccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccC--CCCCCCEEEcccCc
Q 045649 161 YFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLG--NLKSLSTLDLSKNQ 238 (725)
Q Consensus 161 ~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~ 238 (725)
++++|.+.+..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+.+..+..+. .+++|++|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 9999999877778899999999999999999988888899999999999999999887776554 56899999999999
Q ss_pred CcccCCcCccCCCCCceEEeecccccccCCccc---cCCCCCCEEECcCccCCccCCccccCCCC--CCEEEccCCcCCC
Q 045649 239 LSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVI---GNLKSLLQLDLSENQLSGSIPLSLGNLSS--LTVMSLFSNSLSG 313 (725)
Q Consensus 239 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~ 313 (725)
+++..|..+..+++|+.|++.++.+.+.....+ ...++|++|++++|.+++..|..+..++. |++|++++|.+++
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 998888889999999999999887764332222 13578999999999999888888888754 9999999999998
Q ss_pred CCCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccCcccc-----ccch----hhccCCcccEEecccCccC
Q 045649 314 FIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYG-----FVPE----EIGYLKSIFELDLCTNRLS 384 (725)
Q Consensus 314 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----~~~~----~l~~l~~L~~L~ls~n~l~ 384 (725)
..|..+..+++|++|++++|++.+..|..+..+++|+.|++++|...+ .+|. .+..+++|++|++++|.++
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 888889999999999999999999889999999999999999875543 2232 6778999999999999999
Q ss_pred ccCCccCcCCCCCcEEeCCCCcccCc--CCccccC--CCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccC
Q 045649 385 GAIPHSISNLTELVLVNICENHFFGP--IPKSLRN--LTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEIS 460 (725)
Q Consensus 385 ~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~--~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 460 (725)
+..+..+..+++|+.+++++|.+... .+..+.. .++|+.+++++|++++..+..+..+++|++|++++|.+++.++
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence 98888899999999999999976432 1222332 3689999999999999999999999999999999999998776
Q ss_pred -ccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeee--ecccccccCCCCCCeeeCCCCcCCCCCCcccCC
Q 045649 461 -FNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIV--GEIPVQLGKLFSLTKLILNSNQLSGGIPLELGS 537 (725)
Q Consensus 461 -~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 537 (725)
..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+. +..|..+..+++|++|++++|++++..+..+..
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 502 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc
Confidence 67899999999999999999988999999999999999999986 568889999999999999999999888888999
Q ss_pred CCCCcEEEccCCcccccch--------hhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccC
Q 045649 538 LTELQYIDLSANKLRSWIP--------KSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICN 609 (725)
Q Consensus 538 l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 609 (725)
+++|++|++++|++++..+ ..+.++++|++|+|++|+++...+..|.++++|++|+|++|++++..+..|.+
T Consensus 503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582 (680)
T ss_dssp CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence 9999999999999987532 23788999999999999998655567999999999999999999888888999
Q ss_pred CCCCCEEeCCCCcccccCCcccc-CCCCCCeeeCcCCcccccCCC
Q 045649 610 MKSLEKLNLCHNNLSGFIPRCFE-GMHNLSHIDISYNELQGPIPN 653 (725)
Q Consensus 610 l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~ip~ 653 (725)
+++|+.|++++|++++..|..+. .+++|+++++++|++.|.++.
T Consensus 583 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 99999999999999998888887 789999999999999999885
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-62 Score=567.61 Aligned_cols=581 Identities=23% Similarity=0.225 Sum_probs=511.0
Q ss_pred EEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCc
Q 045649 87 INLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQ 166 (725)
Q Consensus 87 l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 166 (725)
++.++.+++. +| ..+. +++++|++++|.+.+..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.
T Consensus 9 ~~cs~~~L~~-ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 9 ADCSHLKLTQ-VP-DDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EECCSSCCSS-CC-SCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eECCCCCccc-cc-cccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 4445555543 33 2232 789999999999998888889999999999999999999999999999999999999999
Q ss_pred CCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcC
Q 045649 167 LHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFS 246 (725)
Q Consensus 167 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~ 246 (725)
+++..+.+|+++++|++|++++|.+++..|..|+++++|++|++++|.+.+..|..++++++|++|++++|.+++..+..
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence 99666668999999999999999999887889999999999999999999998999999999999999999999877665
Q ss_pred cc--CCCCCceEEeecccccccCCccccCCCCCCEEECcCccCCccCCccc---cCCCCCCEEEccCCcCCCCCCccccc
Q 045649 247 LG--NLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSL---GNLSSLTVMSLFSNSLSGFIPPILGN 321 (725)
Q Consensus 247 l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~~~~l~~ 321 (725)
+. .+++|++|++++|.+++..|..+..+++|+.++++++.+.+.....+ ...++|++|++++|.+++..|..+..
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 244 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence 54 56899999999999999999999999999999999998764322221 13479999999999999999999988
Q ss_pred CCC--CCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecccCccCc-----cCCc----c
Q 045649 322 LKS--LSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSG-----AIPH----S 390 (725)
Q Consensus 322 l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~-----~~~~----~ 390 (725)
++. |++|++++|++++..|..+..+++|++|++++|++.+..|..+..+++|++|++++|...+ .+|. .
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence 865 9999999999999888999999999999999999999999999999999999999876553 2332 6
Q ss_pred CcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccc--cccccC--CCCCCEEECcCCccccccCccccCC
Q 045649 391 ISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKV--YEAFGY--HPNLTFLDFSQNNFYGEISFNWRNF 466 (725)
Q Consensus 391 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~--~~~L~~L~ls~n~l~~~~~~~~~~~ 466 (725)
+..+++|+.+++++|.+.+..+..+.++++|++|++++|.+.... ...|.. .++|+.|++++|++++..+..+..+
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 788999999999999999999999999999999999999865432 233332 3689999999999999999999999
Q ss_pred CCCcEEeCCCccccCCCC-cccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCC--CCCCcccCCCCCCcE
Q 045649 467 PKLCTFNASMNNIYGSIP-TEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLS--GGIPLELGSLTELQY 543 (725)
Q Consensus 467 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~ 543 (725)
++|+.|++++|.+++.+| ..+..+++|++|++++|++++..+..+..+++|+.|++++|.+. +..|..+..+++|++
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 999999999999998776 68999999999999999999999999999999999999999886 568889999999999
Q ss_pred EEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCc--------hhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCE
Q 045649 544 IDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIP--------IEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEK 615 (725)
Q Consensus 544 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 615 (725)
|++++|++++..+..|.++++|++|++++|++++..+ ..+.++++|++|+|++|+++...+..|+++++|++
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 9999999999888889999999999999999986422 23789999999999999999777778999999999
Q ss_pred EeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCCC-----CCcCceecccCCCCCCC
Q 045649 616 LNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS-----TVFKDAHVEGNKGLCGN 671 (725)
Q Consensus 616 L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-----~~~~~~~~~gn~~lc~~ 671 (725)
|++++|++++..+..|.++++|++|++++|++++..|.. ..++.+.+.|||+.|.-
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 999999999888888999999999999999999876642 33455588999999854
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.2e-59 Score=529.63 Aligned_cols=525 Identities=20% Similarity=0.228 Sum_probs=422.8
Q ss_pred CCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEcc
Q 045649 108 HLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALC 187 (725)
Q Consensus 108 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls 187 (725)
++++|++++|.+.+..|..|+++++|++|++++|++++..|..|+++++|++|++++|.+.+..|..|+++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 67888888888887777788888888888888888887778888888888888888888887777788888888888888
Q ss_pred ccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCc--eEEeecccccc
Q 045649 188 HNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLG--ILYLYSNSLSG 265 (725)
Q Consensus 188 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~ 265 (725)
+|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|+ .|++++|.+++
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 8888766666777777777777777777664333344477777777777777766666677777777 67777777776
Q ss_pred cCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCC
Q 045649 266 HIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGN 345 (725)
Q Consensus 266 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 345 (725)
..|..+. ..+|++|++++|. .++..+..+.+++...+....+ ..+...++....+ ..+..
T Consensus 194 ~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~-----------~~~~~~~i~~~~~-----~~l~~ 253 (606)
T 3t6q_A 194 IEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTF-----------EDMDDEDISPAVF-----EGLCE 253 (606)
T ss_dssp ECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCC-----------TTSCCCCCCGGGG-----GGGGG
T ss_pred cChhHhh-hccccccccCCch---hHHHHhhhccccchhheechhh-----------ccccccccChhHh-----chhhc
Confidence 5555443 3467777777665 2233344444443333322111 1112222221111 12222
Q ss_pred CcccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEE
Q 045649 346 LSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVR 425 (725)
Q Consensus 346 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 425 (725)
. +|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..|..+..+++|++|+
T Consensus 254 ~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 254 M-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp S-EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred C-ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence 2 6889999999998887777888899999999999988 7788888899999999999999888888899999999999
Q ss_pred ccCCcCcccccc-cccCCCCCCEEECcCCcccccc--CccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCe
Q 045649 426 FNQNNLSGKVYE-AFGYHPNLTFLDFSQNNFYGEI--SFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNH 502 (725)
Q Consensus 426 l~~n~l~~~~~~-~~~~~~~L~~L~ls~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 502 (725)
+++|.+.+.++. .+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+.+..|..+..+++|++|++++|+
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 999988866554 4888999999999999998876 7788999999999999999998889999999999999999999
Q ss_pred eeeccccc-ccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCccccc---chhhhhcccCCCeeeCcCCcCCcC
Q 045649 503 IVGEIPVQ-LGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSW---IPKSIANLLKLYYLNLSNNQFSQK 578 (725)
Q Consensus 503 l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~ 578 (725)
+++..+.. +..+++|++|++++|.+.+..|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++.
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 98776654 88999999999999999998899999999999999999999873 236789999999999999999999
Q ss_pred CchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCCCC
Q 045649 579 IPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNST 655 (725)
Q Consensus 579 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~ 655 (725)
.|..|+.+++|++|+|++|++++.+|..+.++++| +|++++|++++.+|..+..+++|+++++++|++.|.++..+
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 567 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY 567 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHH
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999887543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-58 Score=525.73 Aligned_cols=518 Identities=18% Similarity=0.181 Sum_probs=385.5
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEE
Q 045649 81 AERVISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSL 160 (725)
Q Consensus 81 ~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 160 (725)
..+++.++++++.+++..+ .+|..+++|++|+|++|.+.+..|.+|+++++|++|++++|++++..|..|+++++|++|
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp CTTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred CCcCcEEEccCCccCcCCh-hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 3579999999999987655 689999999999999999999899999999999999999999999999999999999999
Q ss_pred EccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCC--EEEcccCc
Q 045649 161 YFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLS--TLDLSKNQ 238 (725)
Q Consensus 161 ~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~Ls~n~ 238 (725)
++++|.+++..|..++++++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..++.+++|+ +|++++|.
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 9999999987788899999999999999999985545566699999999999999988888999999999 99999999
Q ss_pred CcccCCcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCccCCcc-----CCccccCCC--CCCEEEccCCcC
Q 045649 239 LSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGS-----IPLSLGNLS--SLTVMSLFSNSL 311 (725)
Q Consensus 239 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----~p~~l~~l~--~L~~L~L~~n~l 311 (725)
+++..|..+. ..+|+.|++++|. .++..+..+.+++...+....+.+. .+..+..+. +|+.|++++|.+
T Consensus 191 l~~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 191 IAGIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp CCEECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred cCccChhHhh-hccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 9988776654 4689999999986 3445555565555444433222211 111111111 455555555555
Q ss_pred CCCCCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecccCccCccCCccC
Q 045649 312 SGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSI 391 (725)
Q Consensus 312 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~ 391 (725)
++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-- 343 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT-- 343 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS--
T ss_pred CccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch--
Confidence 5544444555555555555555554 3444445555555555555555544444444445555555555544433332
Q ss_pred cCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccc--cccccCCCCCCEEECcCCccccccCccccCCCCC
Q 045649 392 SNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKV--YEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKL 469 (725)
Q Consensus 392 ~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L 469 (725)
..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 344 ---------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 402 (606)
T 3t6q_A 344 ---------------------GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402 (606)
T ss_dssp ---------------------STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC
T ss_pred ---------------------hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC
Confidence 22555556666666666665544 4556666677777777777766666667777777
Q ss_pred cEEeCCCccccCCCCc-ccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCC---CCCcccCCCCCCcEEE
Q 045649 470 CTFNASMNNIYGSIPT-EIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSG---GIPLELGSLTELQYID 545 (725)
Q Consensus 470 ~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~l~~l~~L~~L~ 545 (725)
+.|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++.+ ..+..+..+++|++|+
T Consensus 403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred CeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence 7777777777666544 37777788888888888777777777778888888888887765 2335678888899999
Q ss_pred ccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccc
Q 045649 546 LSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSG 625 (725)
Q Consensus 546 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 625 (725)
+++|++++..|..|.++++|++|++++|++++..|..+.+++.| +|++++|++++.+|..++.+++|+.|++++|++.+
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 99999888888888889999999999999988888899999999 99999999998888888888999999999999886
Q ss_pred cCC
Q 045649 626 FIP 628 (725)
Q Consensus 626 ~~p 628 (725)
..+
T Consensus 562 ~c~ 564 (606)
T 3t6q_A 562 TCS 564 (606)
T ss_dssp SGG
T ss_pred cCC
Confidence 543
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-58 Score=540.07 Aligned_cols=551 Identities=23% Similarity=0.221 Sum_probs=421.4
Q ss_pred EEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccC-CccCcCCCCCCEEEccCC
Q 045649 87 INLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVI-PQEIGHLNQLRSLYFDVN 165 (725)
Q Consensus 87 l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~l~~n 165 (725)
.+.++++++. +| . -.+++++|||++|.+.+..|..|+++++|++|+|++|...+.+ |..|+++++|++|++++|
T Consensus 9 ~dcs~~~L~~-vP--~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 9 AFYRFCNLTQ-VP--Q--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEESCCCSSC-CC--S--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEccCCCCCC-CC--C--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 3445555553 23 2 4578999999999998888888999999999999999666555 778899999999999999
Q ss_pred cCCcCCCcccCCCCCCCEEEccccccCCCCccc--cCCCCCCCEEEecCCCCCccCc-cccCCCCCCCEEEcccCcCccc
Q 045649 166 QLHGSIPPEIGQLNLINELALCHNNLHGPIPPS--LGNLSNLANFYLNNNSLFDSIP-LVLGNLKSLSTLDLSKNQLSGL 242 (725)
Q Consensus 166 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~ 242 (725)
.+.+..|.+|+++++|++|++++|.+++.+|.. +.++++|++|++++|.+.+..+ ..|+++++|++|++++|.+++.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 998888999999999999999999998866655 8899999999999999877654 5788999999999999999888
Q ss_pred CCcCccCC--CCCceEEeecccccccCCccccCCCC------CCEEECcCccCCccCCccccCC---CCCCEEEccCCcC
Q 045649 243 IPFSLGNL--SNLGILYLYSNSLSGHIPSVIGNLKS------LLQLDLSENQLSGSIPLSLGNL---SSLTVMSLFSNSL 311 (725)
Q Consensus 243 ~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~L~~n~l 311 (725)
.+..+..+ ++|+.|++++|.+.+..|..++.+++ |++|++++|.+++..+..+... +.++.+.+..+..
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 88888777 88999999999988888877776665 8899999998887777666543 5677777764432
Q ss_pred CCCCCcccccCCCCCcccccCccCCCcCccccCCC--cccceeecccCccccccchhhccCCcccEEecccCccCccCCc
Q 045649 312 SGFIPPILGNLKSLSALGLHINQLNGVIPASIGNL--SSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPH 389 (725)
Q Consensus 312 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~ 389 (725)
... +..+.+.+..+..+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|.
T Consensus 244 ~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 308 (844)
T 3j0a_A 244 GAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308 (844)
T ss_dssp BCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred ccc---------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence 211 11222222222233332 5677777777777766666677777777777777777766666
Q ss_pred cCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCC
Q 045649 390 SISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKL 469 (725)
Q Consensus 390 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L 469 (725)
.|..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++. ..+++|
T Consensus 309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L 383 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSI 383 (844)
T ss_dssp TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSC
T ss_pred HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCc
Confidence 777777777777777777766677777777777777777777777777777777778888877777642 236778
Q ss_pred cEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecc-cccccCCCCCCeeeCCCCcCCCCCCc-ccCCCCCCcEEEcc
Q 045649 470 CTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEI-PVQLGKLFSLTKLILNSNQLSGGIPL-ELGSLTELQYIDLS 547 (725)
Q Consensus 470 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls 547 (725)
+.+++++|+++ .+|.. ..+++.|++++|++++.. +..+..+++|++|++++|++++..+. .+..+++|++|+++
T Consensus 384 ~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls 459 (844)
T 3j0a_A 384 PDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459 (844)
T ss_dssp SEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEE
T ss_pred chhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCC
Confidence 88888888776 33433 457888899988887542 23456788999999999998865443 35567899999999
Q ss_pred CCccc-----ccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCc
Q 045649 548 ANKLR-----SWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNN 622 (725)
Q Consensus 548 ~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 622 (725)
+|.++ +..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++.+|..+. ++|+.|++++|+
T Consensus 460 ~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQ 537 (844)
T ss_dssp SCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEEC
T ss_pred CCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCc
Confidence 99987 44456788999999999999999999999999999999999999999998887776 899999999999
Q ss_pred ccccCCccccCCCCCCeeeCcCCcccccCCCCCCcCceecccCCCCCCCC
Q 045649 623 LSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTVFKDAHVEGNKGLCGNV 672 (725)
Q Consensus 623 l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~gn~~lc~~~ 672 (725)
+++.+|..|. +|+.+++++|++.|.++..+.. .+...++..+||.+
T Consensus 538 l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~f~-~~~~~~~~~~~~~~ 583 (844)
T 3j0a_A 538 LLAPNPDVFV---SLSVLDITHNKFICECELSTFI-NWLNHTNVTIAGPP 583 (844)
T ss_dssp CCCCCSCCCS---SCCEEEEEEECCCCSSSCCSHH-HHHHHTTTTTCCCG
T ss_pred CCCCChhHhC---CcCEEEecCCCcccccccHHHH-HHHHhcCccccccc
Confidence 9999998764 7899999999999998864332 22233444444443
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.8e-58 Score=522.26 Aligned_cols=539 Identities=19% Similarity=0.208 Sum_probs=450.3
Q ss_pred EEEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCC
Q 045649 86 SINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVN 165 (725)
Q Consensus 86 ~l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 165 (725)
.++.++.+++. +|. .+ .+++++|++++|.+.+..+..|+++++|++|++++|.+++..|..|+++++|++|++++|
T Consensus 15 ~~~c~~~~l~~-ip~-~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 15 TYQCMDQKLSK-VPD-DI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp EEECTTSCCSS-CCT-TS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEccCCCccc-CCC-CC--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 45566666653 331 22 278999999999998888889999999999999999999888889999999999999999
Q ss_pred cCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCc-cCccccCCCCCCCEEEcccCcCcccCC
Q 045649 166 QLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFD-SIPLVLGNLKSLSTLDLSKNQLSGLIP 244 (725)
Q Consensus 166 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~ 244 (725)
.+.+..|.+|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 9998889999999999999999999998777889999999999999999876 578899999999999999999998888
Q ss_pred cCccCCCCCc----eEEeecccccccCCccccCCCCCCEEECcCccCC-ccCCccccCCCCCCEEEccCCcCCCCCCccc
Q 045649 245 FSLGNLSNLG----ILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLS-GSIPLSLGNLSSLTVMSLFSNSLSGFIPPIL 319 (725)
Q Consensus 245 ~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l 319 (725)
..++.+.+|+ +|++++|.+++..+..+... +|++|++++|.++ +..|..+.++++|+.+++..+.+.+.
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~----- 244 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE----- 244 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS-----
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccC-----
Confidence 8887776655 79999999886555555444 8899999988886 45667788888888888765544321
Q ss_pred ccCCCCCcccccCccCCCcCccccCCCcccceeec-ccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCc
Q 045649 320 GNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYL-YNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELV 398 (725)
Q Consensus 320 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 398 (725)
..+..+ ....+..+..+ .++.+++ ..+.+.+.+|. +..+++|+.+++++|.+. .+| .+..+++|+
T Consensus 245 ---~~l~~~-------~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~ 310 (606)
T 3vq2_A 245 ---RNLEIF-------EPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQ 310 (606)
T ss_dssp ---CCCSCC-------CGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCS
T ss_pred ---Cccccc-------ChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCC
Confidence 111111 11111222222 4666777 66777777776 778888999999988886 455 788888899
Q ss_pred EEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccc--cCccccCCCCCcEEeCCC
Q 045649 399 LVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGE--ISFNWRNFPKLCTFNASM 476 (725)
Q Consensus 399 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~~~~~~L~~L~l~~ 476 (725)
.+++++|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|.+++. ++..+..+++|+.|++++
T Consensus 311 ~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~ 385 (606)
T 3vq2_A 311 SLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385 (606)
T ss_dssp EEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred EEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC
Confidence 999999988 6777 44 8899999999998655443 567889999999999998876 478888999999999999
Q ss_pred ccccCCCCcccCCCCCCcEEeCCCCeeeeccc-ccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccc-c
Q 045649 477 NNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIP-VQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRS-W 554 (725)
Q Consensus 477 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~ 554 (725)
|.+++ +|..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .
T Consensus 386 n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 464 (606)
T 3vq2_A 386 NGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464 (606)
T ss_dssp CSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Ccccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 99876 56789999999999999999998877 688999999999999999999899999999999999999999998 4
Q ss_pred chhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCC
Q 045649 555 IPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGM 634 (725)
Q Consensus 555 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 634 (725)
+|..+..+++|++|++++|++++..|..++++++|++|++++|++++.+|..++++++|++|++++|+++ .+|..+..+
T Consensus 465 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l 543 (606)
T 3vq2_A 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHF 543 (606)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGS
T ss_pred hHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhh
Confidence 7888999999999999999999999999999999999999999999999999999999999999999999 667779998
Q ss_pred C-CCCeeeCcCCcccccCCCCC
Q 045649 635 H-NLSHIDISYNELQGPIPNST 655 (725)
Q Consensus 635 ~-~L~~L~ls~N~l~g~ip~~~ 655 (725)
+ +|+++++++|++.|.++..+
T Consensus 544 ~~~L~~l~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 544 PKSLAFFNLTNNSVACICEHQK 565 (606)
T ss_dssp CTTCCEEECCSCCCCCSSTTHH
T ss_pred cccCcEEEccCCCcccCCccHH
Confidence 7 59999999999999888643
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-56 Score=508.96 Aligned_cols=520 Identities=22% Similarity=0.200 Sum_probs=420.5
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEE
Q 045649 81 AERVISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSL 160 (725)
Q Consensus 81 ~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 160 (725)
..+++.++++++.+++..+ ..|..+++|++|++++|.+.+..|.+|+++++|++|++++|.+++..|..|+++++|++|
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp CTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 3579999999999987655 689999999999999999998889999999999999999999998889999999999999
Q ss_pred EccCCcCCcCCCcccCCCCCCCEEEccccccCC-CCccccCCCCCCCEEEecCCCCCccCccccCCCCCCC----EEEcc
Q 045649 161 YFDVNQLHGSIPPEIGQLNLINELALCHNNLHG-PIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLS----TLDLS 235 (725)
Q Consensus 161 ~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~Ls 235 (725)
++++|.+.+..|..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..|..++.+++|+ +|+++
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 999999998887889999999999999999986 6799999999999999999999998888887766654 89999
Q ss_pred cCcCcccCCcCccCCCCCceEEeeccccc-ccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCC
Q 045649 236 KNQLSGLIPFSLGNLSNLGILYLYSNSLS-GHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGF 314 (725)
Q Consensus 236 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 314 (725)
+|.+++..+..+... +|+.|++++|.++ +..|..+++++.|+.+++..+.+.+.. .+..+ ...
T Consensus 190 ~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l~~~-------~~~ 253 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLEIF-------EPS 253 (606)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCSCC-------CGG
T ss_pred CCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC--------ccccc-------ChH
Confidence 999997666555544 9999999999987 467888999999999998766554211 11100 011
Q ss_pred CCcccccCCCCCcccc-cCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcC
Q 045649 315 IPPILGNLKSLSALGL-HINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISN 393 (725)
Q Consensus 315 ~~~~l~~l~~L~~L~L-~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~ 393 (725)
.+..+..+ .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.+| .+ .
T Consensus 254 ~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~ 326 (606)
T 3vq2_A 254 IMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-D 326 (606)
T ss_dssp GGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-C
T ss_pred Hhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-C
Confidence 11112222 3444444 44555555554 6666666777776666643 33 566666777777777777 4566 33 6
Q ss_pred CCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccc--cccccCCCCCCEEECcCCccccccCccccCCCCCcE
Q 045649 394 LTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKV--YEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCT 471 (725)
Q Consensus 394 l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 471 (725)
+++|+.+++++|...+.+ .+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++ ++..+..+++|+.
T Consensus 327 l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH 403 (606)
T ss_dssp CSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCE
T ss_pred CCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCe
Confidence 677777777777544433 4567788888888888877663 6777888888888888888775 4577888899999
Q ss_pred EeCCCccccCCCC-cccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCC-CCCcccCCCCCCcEEEccCC
Q 045649 472 FNASMNNIYGSIP-TEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSG-GIPLELGSLTELQYIDLSAN 549 (725)
Q Consensus 472 L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n 549 (725)
|++++|.+.+..| ..+..+++|++|++++|++++..|..+..+++|++|++++|++.+ .+|..+..+++|++|++++|
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence 9999999888877 678899999999999999998888889999999999999999987 47888999999999999999
Q ss_pred cccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCC-CCCEEeCCCCcccccCC
Q 045649 550 KLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMK-SLEKLNLCHNNLSGFIP 628 (725)
Q Consensus 550 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p 628 (725)
.+++..|..+.++++|++|++++|++++.+|..++++++|++|++++|+++. +|..+..++ +|++|++++|++....+
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9999888899999999999999999999889999999999999999999984 555688886 69999999999986544
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.1e-58 Score=522.35 Aligned_cols=498 Identities=20% Similarity=0.280 Sum_probs=320.3
Q ss_pred cCCCHHHHHHHHHHHHhccCCCCC-------CCCCCCCCCCCCCCCCCcCCCCCCCCcc---cceeeCCCCCEEEEEcCC
Q 045649 22 SSDSTKEALALLKWKRSLQNQNSS-------LLTSWTLYPANATNVPSYSKAKLSPCAW---VGISCNQAERVISINLSS 91 (725)
Q Consensus 22 ~~~~~~~~~~ll~~k~~~~~~~~~-------~~~~w~~~~~~~~~~~~~~~~~~~~c~w---~gv~c~~~~~v~~l~l~~ 91 (725)
+++...|+.||.++++++.++++. ..++|+ .++ +||.| .||+|+..+||++|+|++
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~----~~~----------~~c~w~~~~GV~C~~~~~V~~L~L~~ 90 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN----FNK----------ELDMWGAQPGVSLNSNGRVTGLSLEG 90 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC----CSS----------CGGGTTCCTTEEECTTCCEEEEECTT
T ss_pred hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC----CCC----------CcccccCCCCeEEcCCCCEEEEEecC
Confidence 344467999999999998764322 123564 344 89999 999999889999999999
Q ss_pred CCCccccCcccccCCCCCCEEECCCCCC------CC------CCccccCCCCCCCEEeCCCCCCCccCCccCcC-CCCCC
Q 045649 92 MGLNGTLQEFAFSSFPHLVRLNLSFNIV------FG------TIPPQVGNLSELQYLDLGSNQLTGVIPQEIGH-LNQLR 158 (725)
Q Consensus 92 ~~l~~~~~~~~l~~l~~L~~L~Ls~n~~------~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~ 158 (725)
+++.|.++ ++++++++|++|+|++|.+ .+ .+|... +.+|+ ++++++.+.+.+|..+.. +.++.
T Consensus 91 ~~l~g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~ 166 (636)
T 4eco_A 91 FGASGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCI 166 (636)
T ss_dssp SCCEEEEC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHH
T ss_pred cccCCcCC-hHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHh
Confidence 99999999 7999999999999999976 33 344433 45666 777777777777766552 22222
Q ss_pred EEEccCCcCCcCCCcccCCCCCCCEEEcc--ccccCCCCccccCCCCCCCEEEecCCCCCcc-----------------C
Q 045649 159 SLYFDVNQLHGSIPPEIGQLNLINELALC--HNNLHGPIPPSLGNLSNLANFYLNNNSLFDS-----------------I 219 (725)
Q Consensus 159 ~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~ 219 (725)
.+++....+. ......++.+.+. .|++++ +|..++++++|++|+|++|.+++. +
T Consensus 167 ~~~l~~~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 167 NSDPQQKSIK------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHCTTSCCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred hcCccccccc------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 2222211111 0111122222222 345555 555555566666666666655553 5
Q ss_pred ccccC--CCCCCCEEEcccCcCcccCCcCccCCCCCceEEeeccc-ccc-cCCccccCC------CCCCEEECcCccCCc
Q 045649 220 PLVLG--NLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNS-LSG-HIPSVIGNL------KSLLQLDLSENQLSG 289 (725)
Q Consensus 220 p~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~Ls~n~l~~ 289 (725)
|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..++++ ++|++|++++|+++
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 66655 66666666666666666666666666666666666665 555 556555554 66666666666666
Q ss_pred cCCc--cccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCcc-cceeecccCccccccchh
Q 045649 290 SIPL--SLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSS-LRLLYLYNNGLYGFVPEE 366 (725)
Q Consensus 290 ~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~ 366 (725)
.+|. .++.+++|++|++++|.++|.+| .+..+++|++|++++|+++ .+|..+..+++ |+.|++++|.++ .+|..
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~ 395 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNI 395 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchh
Confidence 5565 56666666666666666665666 5666666666666666666 55556666666 666666666666 45555
Q ss_pred hccCC--cccEEecccCccCccCCccCc-------CCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccc
Q 045649 367 IGYLK--SIFELDLCTNRLSGAIPHSIS-------NLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYE 437 (725)
Q Consensus 367 l~~l~--~L~~L~ls~n~l~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 437 (725)
+...+ +|++|++++|.+++..|..+. .+++|+.|++++|.+....+..+..+++|++|++++|+++.....
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~ 475 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence 55433 667777777777766666666 566777777777777644334455577777777777777743333
Q ss_pred cccCC-------CCCCEEECcCCccccccCcccc--CCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCC------Ce
Q 045649 438 AFGYH-------PNLTFLDFSQNNFYGEISFNWR--NFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSS------NH 502 (725)
Q Consensus 438 ~~~~~-------~~L~~L~ls~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~------n~ 502 (725)
.+... ++|++|++++|+++ .+|..+. .+++|+.|++++|.+++ +|..+..+++|++|++++ |+
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred HhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCc
Confidence 33322 27888888888887 5677665 78888888888888887 777888888888888854 55
Q ss_pred eeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccc
Q 045649 503 IVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRS 553 (725)
Q Consensus 503 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 553 (725)
+.+.+|..+..+++|++|++++|++ +.+|..+. ++|++|++++|++..
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred ccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 5555566666666666666666666 34554443 456666666665443
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-55 Score=514.51 Aligned_cols=528 Identities=22% Similarity=0.209 Sum_probs=426.6
Q ss_pred CCCcccceeeCCCCCEEEEEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCC-ccccCCCCCCCEEeCCCCCCCccC
Q 045649 69 SPCAWVGISCNQAERVISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTI-PPQVGNLSELQYLDLGSNQLTGVI 147 (725)
Q Consensus 69 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~ 147 (725)
..|.|..|.+ -..+++.|+|+++.+++..+ .+|..+++|++|+|++|...+.+ |.+|+++++|++|+|++|.+.+..
T Consensus 12 s~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 12 RFCNLTQVPQ-VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp SCCCSSCCCS-SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred cCCCCCCCCC-CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 3467888888 67899999999999987655 68999999999999999776666 788999999999999999999999
Q ss_pred CccCcCCCCCCEEEccCCcCCcCCCcc--cCCCCCCCEEEccccccCCCCc-cccCCCCCCCEEEecCCCCCccCccccC
Q 045649 148 PQEIGHLNQLRSLYFDVNQLHGSIPPE--IGQLNLINELALCHNNLHGPIP-PSLGNLSNLANFYLNNNSLFDSIPLVLG 224 (725)
Q Consensus 148 p~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 224 (725)
|..|+++++|++|++++|.+.+.+|.. ++++++|++|++++|.+++..+ ..|+++++|++|++++|.+.+..+..+.
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence 999999999999999999999877765 8999999999999999988655 5799999999999999999998898888
Q ss_pred CC--CCCCEEEcccCcCcccCCcCccCCCC------CceEEeecccccccCCccccCC---CCCCEEECcCccCCccCCc
Q 045649 225 NL--KSLSTLDLSKNQLSGLIPFSLGNLSN------LGILYLYSNSLSGHIPSVIGNL---KSLLQLDLSENQLSGSIPL 293 (725)
Q Consensus 225 ~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~Ls~n~l~~~~p~ 293 (725)
.+ ++|++|+++.|.+.+..|..+..+++ |+.|++++|.+++..+..+... ..++.+.++.+.....
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~--- 246 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG--- 246 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc---
Confidence 77 89999999999999988888877766 9999999999998888777543 6788888875443211
Q ss_pred cccCCCCCCEEEccCCcCCCCCCcccccC--CCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCC
Q 045649 294 SLGNLSSLTVMSLFSNSLSGFIPPILGNL--KSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLK 371 (725)
Q Consensus 294 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 371 (725)
+..+.+.+..+..+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..+..++
T Consensus 247 ------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 314 (844)
T 3j0a_A 247 ------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314 (844)
T ss_dssp ------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS
T ss_pred ------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC
Confidence 11122222222333333 5677777777777766667777777777777777777777777777777
Q ss_pred cccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECc
Q 045649 372 SIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFS 451 (725)
Q Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls 451 (725)
+|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++.. .+++|+.|+++
T Consensus 315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~ 389 (844)
T 3j0a_A 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLS 389 (844)
T ss_dssp SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEE
T ss_pred CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccC
Confidence 7777777777777666777777777777777777777766667777788888888888776432 26778888888
Q ss_pred CCccccccCccccCCCCCcEEeCCCccccCCC-CcccCCCCCCcEEeCCCCeeeecccc-cccCCCCCCeeeCCCCcCC-
Q 045649 452 QNNFYGEISFNWRNFPKLCTFNASMNNIYGSI-PTEIGDLSKLQVLDLSSNHIVGEIPV-QLGKLFSLTKLILNSNQLS- 528 (725)
Q Consensus 452 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~- 528 (725)
+|+++. +|.. ..+++.+++++|.+++.. +..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+.
T Consensus 390 ~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 465 (844)
T 3j0a_A 390 GNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465 (844)
T ss_dssp SCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSS
T ss_pred CCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccc
Confidence 888773 3322 467888888888887642 33456888999999999998765443 3556789999999999887
Q ss_pred ----CCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCC
Q 045649 529 ----GGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMP 604 (725)
Q Consensus 529 ----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 604 (725)
+..+..+..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..+. ++|+.|+|++|++++.+|
T Consensus 466 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp SCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS
T ss_pred ccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCCh
Confidence 44456788899999999999999998888999999999999999999987777766 899999999999999999
Q ss_pred ccccCCCCCCEEeCCCCcccccC
Q 045649 605 FQICNMKSLEKLNLCHNNLSGFI 627 (725)
Q Consensus 605 ~~l~~l~~L~~L~L~~N~l~~~~ 627 (725)
..+ .+|+.|++++|++....
T Consensus 544 ~~~---~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 544 DVF---VSLSVLDITHNKFICEC 563 (844)
T ss_dssp CCC---SSCCEEEEEEECCCCSS
T ss_pred hHh---CCcCEEEecCCCccccc
Confidence 765 48999999999988653
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1e-54 Score=501.61 Aligned_cols=511 Identities=19% Similarity=0.256 Sum_probs=318.1
Q ss_pred ccCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCcc------------cceeeCCCCCEEEEE
Q 045649 21 ISSDSTKEALALLKWKRSLQNQNSSLLTSWTLYPANATNVPSYSKAKLSPCAW------------VGISCNQAERVISIN 88 (725)
Q Consensus 21 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~w------------~gv~c~~~~~v~~l~ 88 (725)
++++..+|+.||++||+++.+ | +|+. ++ .+.....++|.| .||+|+..+||++|+
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~-~-----~W~~---~~----~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~ 329 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDG-K-----NWRY---YS----GTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLS 329 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTG-G-----GCCC---CC----SSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEE
T ss_pred ccccchHHHHHHHHHHHHcCC-C-----CCCc---CC----CcccccCCccccccccccccccCcCceEecCCCCEEEEE
Confidence 344556899999999999964 3 7861 21 000111134999 999999889999999
Q ss_pred cCCCCCccccCcccccCCCCCCEEEC-CCCCCCCCCccccCCCC-CCC--------------EEeC-CCCCCCcc-----
Q 045649 89 LSSMGLNGTLQEFAFSSFPHLVRLNL-SFNIVFGTIPPQVGNLS-ELQ--------------YLDL-GSNQLTGV----- 146 (725)
Q Consensus 89 l~~~~l~~~~~~~~l~~l~~L~~L~L-s~n~~~~~~~~~~~~l~-~L~--------------~L~L-s~n~l~~~----- 146 (725)
|+++++.|.+| ++++++++|++|+| ++|.+.|..|....... .+. .++. ....+.+.
T Consensus 330 Ls~~~L~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l 408 (876)
T 4ecn_A 330 LAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI 408 (876)
T ss_dssp CTTTCCEEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred CccCCCCCcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHh
Confidence 99999999999 78999999999999 88887766332211000 000 0000 00000000
Q ss_pred ------CCccCcCCCCCCEEEccC--CcCCcCCCcccCCCCCCCEEEccccccCC-----------------CCccccC-
Q 045649 147 ------IPQEIGHLNQLRSLYFDV--NQLHGSIPPEIGQLNLINELALCHNNLHG-----------------PIPPSLG- 200 (725)
Q Consensus 147 ------~p~~~~~l~~L~~L~l~~--n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-----------------~~~~~l~- 200 (725)
.+........++.+.+.. |.+++ +|..|+++++|++|+|++|.+++ .+|..++
T Consensus 409 ~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f 487 (876)
T 4ecn_A 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487 (876)
T ss_dssp HTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred hhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhh
Confidence 000001111222222222 44444 44445555555555555555554 2555555
Q ss_pred -CCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCc-Ccc-cCCcCccCCC-------CCceEEeecccccccCCc-
Q 045649 201 -NLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQ-LSG-LIPFSLGNLS-------NLGILYLYSNSLSGHIPS- 269 (725)
Q Consensus 201 -~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~p~- 269 (725)
++++|++|+|++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.++ +|+.|++++|.++ .+|.
T Consensus 488 ~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 566 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS 566 (876)
T ss_dssp GGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH
T ss_pred ccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCCh
Confidence 66666666666666666666666666666666666665 555 4554443333 6666666666666 5565
Q ss_pred -cccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCC-CCcccccCccCCCcCccccCCCc
Q 045649 270 -VIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKS-LSALGLHINQLNGVIPASIGNLS 347 (725)
Q Consensus 270 -~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~ 347 (725)
.++++++|++|++++|+++ .+| .++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..++
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~ 642 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred hhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccc
Confidence 5666666666666666666 555 6666666666666666666 55555666666 666666666666 4555555443
Q ss_pred c--cceeecccCccccccchh---hc--cCCcccEEecccCccCccCCccC-cCCCCCcEEeCCCCcccCcCCcccc---
Q 045649 348 S--LRLLYLYNNGLYGFVPEE---IG--YLKSIFELDLCTNRLSGAIPHSI-SNLTELVLVNICENHFFGPIPKSLR--- 416 (725)
Q Consensus 348 ~--L~~L~L~~n~l~~~~~~~---l~--~l~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~l~--- 416 (725)
. |+.|++++|++.+.+|.. +. .+++|+.|++++|.++ .+|..+ ..+++|+.|++++|.+. .+|..+.
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~ 720 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPK 720 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT
T ss_pred cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc
Confidence 3 666666666666554421 11 2336677777777776 344433 36667777777777766 3443332
Q ss_pred -----CCCCCcEEEccCCcCccccccccc--CCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCC
Q 045649 417 -----NLTSLERVRFNQNNLSGKVYEAFG--YHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGD 489 (725)
Q Consensus 417 -----~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 489 (725)
++++|++|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++++|.
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~----------- 787 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR----------- 787 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-----------
T ss_pred cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-----------
Confidence 2348899999999888 5666665 88889999999888887 67777777777777777765
Q ss_pred CCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeee
Q 045649 490 LSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLN 569 (725)
Q Consensus 490 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 569 (725)
++++|++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+..+.....+..+.
T Consensus 788 -------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~ 857 (876)
T 4ecn_A 788 -------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYV 857 (876)
T ss_dssp -------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCE
T ss_pred -------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchhee
Confidence 5566777777777777778888888888877 56676654 5788888888877776666665555566666
Q ss_pred CcCCcCC
Q 045649 570 LSNNQFS 576 (725)
Q Consensus 570 Ls~n~l~ 576 (725)
|.+|+..
T Consensus 858 L~~n~~~ 864 (876)
T 4ecn_A 858 LLYDKTQ 864 (876)
T ss_dssp EECCTTS
T ss_pred ecCCCcc
Confidence 6666553
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.7e-53 Score=476.08 Aligned_cols=521 Identities=21% Similarity=0.199 Sum_probs=407.2
Q ss_pred CCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccc
Q 045649 109 LVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCH 188 (725)
Q Consensus 109 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~ 188 (725)
.+..+.++.+++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|+++++|++|++++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 355666666553 4565443 5789999999999887788899999999999999998887788889999999999999
Q ss_pred cccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcc-cCCcCccCCCCCceEEeecccccccC
Q 045649 189 NNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSG-LIPFSLGNLSNLGILYLYSNSLSGHI 267 (725)
Q Consensus 189 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~ 267 (725)
|.+++..|..|.++++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 98887777888899999999999998877666568888999999999988886 36888888888999999888888777
Q ss_pred CccccCCCCC----CEEECcCccCCccCCccccCCCCCCEEEccCCcCCC-CCCcccccCCCCCcccccCccCCCcCccc
Q 045649 268 PSVIGNLKSL----LQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSG-FIPPILGNLKSLSALGLHINQLNGVIPAS 342 (725)
Q Consensus 268 p~~l~~l~~L----~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 342 (725)
+..++.+++| +++++++|.+++..|..+... +|+.|++++|.... .++..+..+++++...+....+..
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~----- 239 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN----- 239 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC-----
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC-----
Confidence 7778777777 788888888887766666655 78888888774432 233445555555555443322211
Q ss_pred cCCCcccceeecccCccccccchhhccCCcccEEecccC-ccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCC
Q 045649 343 IGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTN-RLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSL 421 (725)
Q Consensus 343 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L 421 (725)
...++. +....+ ..+..+ .++.++++++ .+.+..|..+..+++|+.+++++|.+. .+|..+..+ +|
T Consensus 240 ---~~~l~~--~~~~~~-----~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L 306 (570)
T 2z63_A 240 ---EGNLEK--FDKSAL-----EGLCNL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GW 306 (570)
T ss_dssp ---CSSCEE--CCTTTT-----GGGGGS-EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CC
T ss_pred ---chhhhh--cchhhh-----cccccc-chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-Cc
Confidence 011111 011111 111111 3455666666 556666666777777777777777765 466666666 77
Q ss_pred cEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCC--CcccCCCCCCcEEeCC
Q 045649 422 ERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSI--PTEIGDLSKLQVLDLS 499 (725)
Q Consensus 422 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls 499 (725)
++|++++|.+... |. ..+++|++|++++|.+.+..+. ..+++|+.|++++|.+++.. +..+..+++|++|+++
T Consensus 307 ~~L~l~~n~~~~l-~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~ 381 (570)
T 2z63_A 307 QHLELVNCKFGQF-PT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381 (570)
T ss_dssp SEEEEESCBCSSC-CB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECC
T ss_pred cEEeeccCccccc-Cc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECC
Confidence 7777777777633 22 3567788888888887766554 67888888888888887654 6678889999999999
Q ss_pred CCeeeecccccccCCCCCCeeeCCCCcCCCCCC-cccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCC-c
Q 045649 500 SNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIP-LELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFS-Q 577 (725)
Q Consensus 500 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~ 577 (725)
+|.+++..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|++. +
T Consensus 382 ~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 460 (570)
T 2z63_A 382 FNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460 (570)
T ss_dssp SCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence 9999866554 8899999999999999987766 56889999999999999999999999999999999999999997 5
Q ss_pred CCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCCCCCc
Q 045649 578 KIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTVF 657 (725)
Q Consensus 578 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 657 (725)
.+|..+..+++|++|++++|++++..|..++.+++|++|++++|++++.+|..|..+++|++|++++|+++|.+|..+.+
T Consensus 461 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred cchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999987655
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-51 Score=460.41 Aligned_cols=498 Identities=21% Similarity=0.235 Sum_probs=414.4
Q ss_pred CCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEc
Q 045649 107 PHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELAL 186 (725)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 186 (725)
+++++|++++|.+.+..+.+|.++++|++|++++|++++..|..|+++++|++|++++|.+++..|.+|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 57999999999999888889999999999999999999888889999999999999999999888899999999999999
Q ss_pred cccccCCCCccccCCCCCCCEEEecCCCCCc-cCccccCCCCCCCEEEcccCcCcccCCcCccCCCCC----ceEEeecc
Q 045649 187 CHNNLHGPIPPSLGNLSNLANFYLNNNSLFD-SIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNL----GILYLYSN 261 (725)
Q Consensus 187 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L----~~L~L~~n 261 (725)
++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++| +.|++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999997766679999999999999999977 579999999999999999999998888888888888 89999999
Q ss_pred cccccCCccccCCCCCCEEECcCccCCc-cCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCc
Q 045649 262 SLSGHIPSVIGNLKSLLQLDLSENQLSG-SIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIP 340 (725)
Q Consensus 262 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 340 (725)
.+.+..|..+... +|++|++++|.... .++..+..+++++...+....+.. ..+++.+ ....+.
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--------~~~l~~~--~~~~~~---- 252 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--------EGNLEKF--DKSALE---- 252 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--------CSSCEEC--CTTTTG----
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC--------chhhhhc--chhhhc----
Confidence 9998888877766 89999999985432 345667788888877765433321 1111111 111111
Q ss_pred cccCCCcccceeecccC-ccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCC
Q 045649 341 ASIGNLSSLRLLYLYNN-GLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLT 419 (725)
Q Consensus 341 ~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~ 419 (725)
.+..+ .++.+++.++ .+.+..|..+..+++|++|++++|.++ .+|..+..+ +|+.+++++|.+. .+|. ..++
T Consensus 253 -~l~~l-~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~ 325 (570)
T 2z63_A 253 -GLCNL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLK 325 (570)
T ss_dssp -GGGGS-EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCS
T ss_pred -ccccc-chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--cccc
Confidence 11222 3566666666 666677777777788888888888877 567777777 8888888888776 4444 4677
Q ss_pred CCcEEEccCCcCcccccccccCCCCCCEEECcCCcccccc--CccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEe
Q 045649 420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEI--SFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLD 497 (725)
Q Consensus 420 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 497 (725)
+|+++++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|+.|++++|.+.+..+. +..+++|++|+
T Consensus 326 ~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~ 402 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD 402 (570)
T ss_dssp SCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEE
T ss_pred ccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEE
Confidence 888888888887766554 56788888888888887654 66778888999999999888765554 88899999999
Q ss_pred CCCCeeeeccc-ccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCccc-ccchhhhhcccCCCeeeCcCCcC
Q 045649 498 LSSNHIVGEIP-VQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLR-SWIPKSIANLLKLYYLNLSNNQF 575 (725)
Q Consensus 498 Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l 575 (725)
+++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence 99999987766 56888999999999999999888989999999999999999997 56888999999999999999999
Q ss_pred CcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCc
Q 045649 576 SQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPR 629 (725)
Q Consensus 576 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 629 (725)
++..|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++..|.
T Consensus 483 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 998899999999999999999999999998999999999999999999987664
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.9e-50 Score=450.12 Aligned_cols=496 Identities=19% Similarity=0.198 Sum_probs=340.0
Q ss_pred CCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEcc
Q 045649 108 HLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALC 187 (725)
Q Consensus 108 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls 187 (725)
...+.|.+++.++ .+|..+. ++|++|++++|++++..|..|+++++|++|++++|++.+..|.+|+++++|++|+++
T Consensus 6 ~~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 6 ASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp TTSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence 3344567777664 4565543 678888888888877777778888888888888888877777777788888888888
Q ss_pred ccccCCCCccccCCCCCCCEEEecCCCCCc-cCccccCCCCCCCEEEcccCcCcccCC-cCccCCCCCceEEeecccccc
Q 045649 188 HNNLHGPIPPSLGNLSNLANFYLNNNSLFD-SIPLVLGNLKSLSTLDLSKNQLSGLIP-FSLGNLSNLGILYLYSNSLSG 265 (725)
Q Consensus 188 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~ 265 (725)
+|.+++..|..++++++|++|++++|.+.+ ..|..++++++|++|++++|.+.+.+| ..+..+++|++|++++|.+++
T Consensus 83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 887777666667777777777777777765 345667777777777777776433333 567777777777777777776
Q ss_pred cCCccccCCCCCCEEECcCccCCccCCcc-ccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccC
Q 045649 266 HIPSVIGNLKSLLQLDLSENQLSGSIPLS-LGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIG 344 (725)
Q Consensus 266 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 344 (725)
..|..++.+++|++|++++|.+.. +|.. +..+++|++|++++|.+++.... ......
T Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------~~~~~~ 220 (549)
T 2z81_A 163 YQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFS---------------------PLPVDE 220 (549)
T ss_dssp ECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCC---------------------CCSSCC
T ss_pred cChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCcccccccc---------------------ccchhh
Confidence 677777777777777777766542 2322 23456666666666665543100 001112
Q ss_pred CCcccceeecccCccccccchh----hccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCC
Q 045649 345 NLSSLRLLYLYNNGLYGFVPEE----IGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTS 420 (725)
Q Consensus 345 ~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~ 420 (725)
.+++|+.|++++|.+++..+.. +..+++|+.+++++|.+.+...... .....+..+++
T Consensus 221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~------------------~~~~~~~~l~~ 282 (549)
T 2z81_A 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP------------------SESDVVSELGK 282 (549)
T ss_dssp CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC------------------CTTTCCCCCTT
T ss_pred hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccc------------------cchhhhhhhcc
Confidence 3455666666666665543322 3445667777777776654211000 00011223334
Q ss_pred CcEEEccCCcCccc-----ccccccCCCCCCEEECcCCccccccCccc-cCCCCCcEEeCCCccccCCCC---cccCCCC
Q 045649 421 LERVRFNQNNLSGK-----VYEAFGYHPNLTFLDFSQNNFYGEISFNW-RNFPKLCTFNASMNNIYGSIP---TEIGDLS 491 (725)
Q Consensus 421 L~~L~l~~n~l~~~-----~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~---~~~~~l~ 491 (725)
++.+++.++.+... .+..+...++|+.|++++|.+. .+|..+ ..+++|++|++++|.+++.+| ..++.++
T Consensus 283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~ 361 (549)
T 2z81_A 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361 (549)
T ss_dssp CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST
T ss_pred cccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccc
Confidence 44444444433221 1111223456777777777765 445444 467777777777777776653 3467788
Q ss_pred CCcEEeCCCCeeeeccc--ccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeee
Q 045649 492 KLQVLDLSSNHIVGEIP--VQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLN 569 (725)
Q Consensus 492 ~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 569 (725)
+|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++. +|..+ .++|++|+
T Consensus 362 ~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~ 437 (549)
T 2z81_A 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLD 437 (549)
T ss_dssp TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEE
T ss_pred cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEE
Confidence 89999999998876532 45788899999999999998 678888889999999999999876 34333 26899999
Q ss_pred CcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccc
Q 045649 570 LSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQG 649 (725)
Q Consensus 570 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 649 (725)
+++|++++.+ ..+++|++|+|++|+++ .+|. ...+++|++|++++|++++.+|..|..+++|++|++++|++.|
T Consensus 438 Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 438 VSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred CCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 9999998753 57899999999999998 5565 4679999999999999999999999999999999999999999
Q ss_pred cCCCCCCc
Q 045649 650 PIPNSTVF 657 (725)
Q Consensus 650 ~ip~~~~~ 657 (725)
.+|....+
T Consensus 512 ~~~~~~~l 519 (549)
T 2z81_A 512 SCPRIDYL 519 (549)
T ss_dssp CHHHHHHH
T ss_pred CCccHHHH
Confidence 99854333
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.1e-50 Score=449.50 Aligned_cols=497 Identities=21% Similarity=0.206 Sum_probs=360.4
Q ss_pred CCcccceeeCCCCCEEEEEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCc
Q 045649 70 PCAWVGISCNQAERVISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQ 149 (725)
Q Consensus 70 ~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 149 (725)
.|.|.|+ |+. ++++++ .+|. .+ .++|++|++++|.+.+..|..|+++++|++|++++|++++..|.
T Consensus 3 ~C~~~~~-c~~---------~~~~l~-~ip~-~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDG---------RSRSFT-SIPS-GL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EEC---------TTSCCS-SCCS-CC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EEC---------CCCccc-cccc-cC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4999998 853 333444 3442 22 37999999999999988889999999999999999999998889
Q ss_pred cCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCC-CCccccCCCCCCCEEEecCCCCCccCc-cccCCCC
Q 045649 150 EIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHG-PIPPSLGNLSNLANFYLNNNSLFDSIP-LVLGNLK 227 (725)
Q Consensus 150 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~ 227 (725)
.|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+.+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 99999999999999999998888889999999999999999987 467889999999999999998555555 6899999
Q ss_pred CCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCcc-ccCCCCCCEEECcCccCCccC--Cc-cccCCCCCCE
Q 045649 228 SLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSV-IGNLKSLLQLDLSENQLSGSI--PL-SLGNLSSLTV 303 (725)
Q Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~--p~-~l~~l~~L~~ 303 (725)
+|++|++++|.+++..|..+..+++|++|+++.|.+. .+|.. +..+++|++|++++|++++.. |. ....+++|+.
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 9999999999999999999999999999999999887 44444 467999999999999998642 21 2344677888
Q ss_pred EEccCCcCCCCCCcc----cccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecc
Q 045649 304 MSLFSNSLSGFIPPI----LGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLC 379 (725)
Q Consensus 304 L~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls 379 (725)
|++++|.+++..+.. +..+++|+.+++++|.+.+.... +. .....+..+++++.+++.
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~-----~~-------------~~~~~~~~l~~L~~L~l~ 289 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF-----NP-------------SESDVVSELGKVETVTIR 289 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC-----CC-------------CTTTCCCCCTTCCEEEEE
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccc-----cc-------------cchhhhhhhccccccccc
Confidence 888888776543322 23445555555555554432100 00 000122334455555555
Q ss_pred cCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCcccccc
Q 045649 380 TNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEI 459 (725)
Q Consensus 380 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 459 (725)
++.+.... .+. .++..+...++|+++++++|.+.......+..+++|++|++++|++++.+
T Consensus 290 ~~~i~~~~--~~~-----------------~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ 350 (549)
T 2z81_A 290 RLHIPQFY--LFY-----------------DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350 (549)
T ss_dssp SCBCSCGG--GSC-----------------CCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHH
T ss_pred ccccchhh--hcc-----------------cchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcccccc
Confidence 55443210 000 01111222344555555555554322222234556666666666665544
Q ss_pred C---ccccCCCCCcEEeCCCccccCCCC--cccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcc
Q 045649 460 S---FNWRNFPKLCTFNASMNNIYGSIP--TEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLE 534 (725)
Q Consensus 460 ~---~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 534 (725)
+ ..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..
T Consensus 351 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~ 428 (549)
T 2z81_A 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTC 428 (549)
T ss_dssp HHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTT
T ss_pred ccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccch
Confidence 2 234556666666666666654322 34667777888888888777 567777777888888888888763 3433
Q ss_pred cCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCC
Q 045649 535 LGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLE 614 (725)
Q Consensus 535 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 614 (725)
+ .++|++|++++|++++.+ ..+++|++|++++|+++ .+|. ...+++|++|+|++|++++.+|..++.+++|+
T Consensus 429 ~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 429 I--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp S--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred h--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence 3 258899999999888753 57889999999999997 5665 56789999999999999999998899999999
Q ss_pred EEeCCCCcccccCC
Q 045649 615 KLNLCHNNLSGFIP 628 (725)
Q Consensus 615 ~L~L~~N~l~~~~p 628 (725)
+|++++|++.+..|
T Consensus 501 ~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 501 KIWLHTNPWDCSCP 514 (549)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEEecCCCccCCCc
Confidence 99999999987766
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.8e-50 Score=456.80 Aligned_cols=465 Identities=18% Similarity=0.235 Sum_probs=311.4
Q ss_pred CCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCC------c------cCCccCcCCCCCCEEEccCCcCCcCCCcc
Q 045649 107 PHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLT------G------VIPQEIGHLNQLRSLYFDVNQLHGSIPPE 174 (725)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~------~------~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 174 (725)
.+++.|+|+++.+.|.+|++++++++|++|+|++|.+. + .+|... +.+|+ ++++++.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 47889999999999999999999999999999999762 2 223222 34455 666666666555554
Q ss_pred cCC-CCCCCEEEccccccCCCCccccCCCCCCCEEEec--CCCCCccCccccCCCCCCCEEEcccCcCccc---------
Q 045649 175 IGQ-LNLINELALCHNNLHGPIPPSLGNLSNLANFYLN--NNSLFDSIPLVLGNLKSLSTLDLSKNQLSGL--------- 242 (725)
Q Consensus 175 ~~~-l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~--~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--------- 242 (725)
+.. +..+..+++....+.. .....++.+++. .|++++ +|..++++++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 432 1122222222221111 111222222222 456666 777788888888888888888875
Q ss_pred --------CCcCcc--CCCCCceEEeecccccccCCccccCCCCCCEEECcCcc-CCc-cCCccccCC------CCCCEE
Q 045649 243 --------IPFSLG--NLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQ-LSG-SIPLSLGNL------SSLTVM 304 (725)
Q Consensus 243 --------~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l------~~L~~L 304 (725)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|++|
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 777777 77777777777777777777777777777777777777 776 677766655 777777
Q ss_pred EccCCcCCCCCCc--ccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCc-ccEEecccC
Q 045649 305 SLFSNSLSGFIPP--ILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKS-IFELDLCTN 381 (725)
Q Consensus 305 ~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~ls~n 381 (725)
++++|.++ .+|. .++.+++|++|++++|+++|.+| .+..+++|+.|++++|+++ .+|..+..+++ |++|++++|
T Consensus 311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence 77777777 5666 67777777777777777776666 6666777777777777776 56666666666 777777777
Q ss_pred ccCccCCccCcCCC--CCcEEeCCCCcccCcCCcccc-------CCCCCcEEEccCCcCcccccccccCCCCCCEEECcC
Q 045649 382 RLSGAIPHSISNLT--ELVLVNICENHFFGPIPKSLR-------NLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQ 452 (725)
Q Consensus 382 ~l~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~l~-------~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~ 452 (725)
.++ .+|..+.... +|+.+++++|.+.+.+|..+. .+++|++|++++|++++..+..+..+++|++|++++
T Consensus 388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 776 5666555443 666666666666666666555 445555555555555533333334445555555555
Q ss_pred CccccccCccc-cCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeeccccccc--CCCCCCeeeCCCCcCCC
Q 045649 453 NNFYGEISFNW-RNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLG--KLFSLTKLILNSNQLSG 529 (725)
Q Consensus 453 n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~ 529 (725)
|+++ .+|... ... +..+.++++|++|++++|+++ .+|..+. .+++|+.|++++|++++
T Consensus 467 N~l~-~i~~~~~~~~-----------------~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 467 NMLT-EIPKNSLKDE-----------------NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp SCCS-BCCSSSSEET-----------------TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred CCCC-CcCHHHhccc-----------------cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC
Confidence 5444 222211 000 001223348888888888888 6777776 88889999999998886
Q ss_pred CCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccC
Q 045649 530 GIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICN 609 (725)
Q Consensus 530 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 609 (725)
+|..+..+++|++|++++|+ ++++|++.+.+|..+..+++|++|+|++|++ +.+|..+.
T Consensus 528 -ip~~~~~l~~L~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~- 586 (636)
T 4eco_A 528 -FPTQPLNSSTLKGFGIRNQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT- 586 (636)
T ss_dssp -CCCGGGGCSSCCEEECCSCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-
T ss_pred -cChhhhcCCCCCEEECCCCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-
Confidence 78888888888888888776 5677888888888888888888888888888 56666655
Q ss_pred CCCCCEEeCCCCccccc
Q 045649 610 MKSLEKLNLCHNNLSGF 626 (725)
Q Consensus 610 l~~L~~L~L~~N~l~~~ 626 (725)
++|++|++++|++...
T Consensus 587 -~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 587 -PNISVLDIKDNPNISI 602 (636)
T ss_dssp -TTCCEEECCSCTTCEE
T ss_pred -CcCCEEECcCCCCccc
Confidence 7888888888877644
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-47 Score=439.24 Aligned_cols=518 Identities=20% Similarity=0.212 Sum_probs=367.5
Q ss_pred CCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEc
Q 045649 107 PHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELAL 186 (725)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 186 (725)
+++++|||++|.+++..+.+|.++++|++|||++|++++..|.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 37899999999998777788999999999999999998777778899999999999999988777777888999999999
Q ss_pred cccccCCCCccccCCCCCCCEEEecCCCCCc-cCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCc----eEEeecc
Q 045649 187 CHNNLHGPIPPSLGNLSNLANFYLNNNSLFD-SIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLG----ILYLYSN 261 (725)
Q Consensus 187 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~L~~n 261 (725)
++|++++..+..|+++++|++|++++|.+.+ ..|..++.+++|++|++++|++++..+..+..+.+++ .++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9998887777778888889999998888865 4577788888888888888888887777776554443 5677777
Q ss_pred cccccCCccccCCCCCCEEECcCccCCcc-CCccccCCCCCCEEEccCCcCCC------CCCcccccCCCCCcccccCcc
Q 045649 262 SLSGHIPSVIGNLKSLLQLDLSENQLSGS-IPLSLGNLSSLTVMSLFSNSLSG------FIPPILGNLKSLSALGLHINQ 334 (725)
Q Consensus 262 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~------~~~~~l~~l~~L~~L~L~~n~ 334 (725)
.+....+.. .....++.+++.+|..... .+..+..+..++...+..+.... .....+..+..+...++..+.
T Consensus 212 ~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 212 PMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred cccccCccc-ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 776444433 3344566777777655422 23345556666665554332211 111122222222222222221
Q ss_pred CCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCcc
Q 045649 335 LNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKS 414 (725)
Q Consensus 335 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 414 (725)
.... ....+..+.....++.+++.++.+.... .+.....++.+++.+|.+.+..+.
T Consensus 291 ~~~~---------------------~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~- 346 (635)
T 4g8a_A 291 LDYY---------------------LDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL- 346 (635)
T ss_dssp CCSC---------------------EEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC-
T ss_pred hccc---------------------ccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc-
Confidence 1110 0011122233344444444444443221 123334455555555544433222
Q ss_pred ccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCcccc--ccCccccCCCCCcEEeCCCccccCCCCcccCCCCC
Q 045649 415 LRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYG--EISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSK 492 (725)
Q Consensus 415 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 492 (725)
.+..|+.+++..|...... ....+++|+.+++++|.+.. ..+..+..+.+|+.+++..+..... +..+..+++
T Consensus 347 --~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~ 421 (635)
T 4g8a_A 347 --KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQ 421 (635)
T ss_dssp --BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTT
T ss_pred --cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-ccccccccc
Confidence 2344555555555544322 22345667777777776643 3445555667777777777766543 445777888
Q ss_pred CcEEeCCCCeeeeccc-ccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcc-cccchhhhhcccCCCeeeC
Q 045649 493 LQVLDLSSNHIVGEIP-VQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKL-RSWIPKSIANLLKLYYLNL 570 (725)
Q Consensus 493 L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L 570 (725)
|+.++++.++.....+ ..+..+++++.+++++|.+.+..+..+..++++++|++++|.+ .+..|..|..+++|++|+|
T Consensus 422 L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~L 501 (635)
T 4g8a_A 422 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501 (635)
T ss_dssp CCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEEC
Confidence 8888888888765544 4567888999999999999888888889999999999999974 4567888999999999999
Q ss_pred cCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCC-CCCCeeeCcCCcccc
Q 045649 571 SNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGM-HNLSHIDISYNELQG 649 (725)
Q Consensus 571 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g 649 (725)
++|++++..|..|+++++|++|+|++|++++.+|..|+++++|++|||++|++++.+|..|..+ ++|++|++++|++.|
T Consensus 502 s~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 689999999999999
Q ss_pred cCCCC
Q 045649 650 PIPNS 654 (725)
Q Consensus 650 ~ip~~ 654 (725)
.+...
T Consensus 582 ~C~~~ 586 (635)
T 4g8a_A 582 TCEHQ 586 (635)
T ss_dssp SGGGH
T ss_pred cCCcH
Confidence 88643
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-47 Score=427.81 Aligned_cols=463 Identities=19% Similarity=0.180 Sum_probs=294.3
Q ss_pred CEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCC
Q 045649 134 QYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNN 213 (725)
Q Consensus 134 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 213 (725)
++||+++|+++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|++++..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57899999998 5777665 88999999999988777788889999999999999988877888888999999999998
Q ss_pred CCCccCccccCCCCCCCEEEcccCcCcc-cCCcCccCCCCCceEEeecccccccCCccccCCCCC--CEEECcCccC--C
Q 045649 214 SLFDSIPLVLGNLKSLSTLDLSKNQLSG-LIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSL--LQLDLSENQL--S 288 (725)
Q Consensus 214 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~Ls~n~l--~ 288 (725)
++. .+|.. .+++|++|++++|.+++ .+|..++.+++|++|++++|.+++ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 886 45655 78889999999888887 467888888888888888888875 346667777 8888888888 6
Q ss_pred ccCCccccCCC-CCCEEEccCCcCCCCCCc-ccccCCCCCcccccCcc-------CCCcCccccCCCcccceeecccCcc
Q 045649 289 GSIPLSLGNLS-SLTVMSLFSNSLSGFIPP-ILGNLKSLSALGLHINQ-------LNGVIPASIGNLSSLRLLYLYNNGL 359 (725)
Q Consensus 289 ~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~L~~n~l 359 (725)
+..|..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|. +.+.+| .+..+++|+.|++++|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 66676666554 233456666666554432 34556666666666665 444333 455566666666666655
Q ss_pred ccccchhhc---cCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCccccc
Q 045649 360 YGFVPEEIG---YLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVY 436 (725)
Q Consensus 360 ~~~~~~~l~---~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 436 (725)
++..+..+. ..++|++|++++|.++|.+|..+... ....+++|+.+++++|.+ .+|
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~-------------------~~~~l~~L~~l~l~~n~~--~~p 291 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY-------------------SGTSLKALSIHQVVSDVF--GFP 291 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCC-------------------CSCCCCEEEEEEEEECCC--CSC
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhc-------------------ccccCceeEeccccccce--ecc
Confidence 543222111 12355555555555555555444000 003444455555555444 122
Q ss_pred -ccccCC---CCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeeccccccc
Q 045649 437 -EAFGYH---PNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLG 512 (725)
Q Consensus 437 -~~~~~~---~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 512 (725)
..+..+ .+|+.|++++|.+.+.. .+..+++|++|++++|.+++.+|..++.+++|++|++++|++++..
T Consensus 292 ~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~----- 364 (520)
T 2z7x_B 292 QSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS----- 364 (520)
T ss_dssp THHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH-----
T ss_pred hhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc-----
Confidence 222211 45666666666554321 0134455555555555555544555555555555555555554310
Q ss_pred CCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchh-hhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCE
Q 045649 513 KLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPK-SIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSE 591 (725)
Q Consensus 513 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 591 (725)
.+|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++.+|..+. ++|++
T Consensus 365 -----------------~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~ 425 (520)
T 2z7x_B 365 -----------------KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKV 425 (520)
T ss_dssp -----------------HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCE
T ss_pred -----------------cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCE
Confidence 2233444455555555555555542332 245556666666666666655555443 57777
Q ss_pred EeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCCC
Q 045649 592 LDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS 654 (725)
Q Consensus 592 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 654 (725)
|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|+++|.++..
T Consensus 426 L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 487 (520)
T 2z7x_B 426 LDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487 (520)
T ss_dssp EECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred EECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCch
Confidence 888888776 56666667888888888888888433334788888888888888888877643
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-47 Score=427.61 Aligned_cols=453 Identities=20% Similarity=0.183 Sum_probs=338.3
Q ss_pred CEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEcccc
Q 045649 110 VRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHN 189 (725)
Q Consensus 110 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n 189 (725)
++||+++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 68999999997 5787776 99999999999999888889999999999999999999888999999999999999999
Q ss_pred ccCCCCccccCCCCCCCEEEecCCCCCc-cCccccCCCCCCCEEEcccCcCcccCCcCccCCCCC--ceEEeecccc--c
Q 045649 190 NLHGPIPPSLGNLSNLANFYLNNNSLFD-SIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNL--GILYLYSNSL--S 264 (725)
Q Consensus 190 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~ 264 (725)
+++ .+|.. .+++|++|++++|.+.+ .+|..++++++|++|++++|.+++ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 998 56766 89999999999999987 578999999999999999999986 357778888 9999999999 7
Q ss_pred ccCCccccCCC-CCCEEECcCccCCccCCc-cccCCCCCCEEEccCCc-------CCCCCCcccccCCCCCcccccCccC
Q 045649 265 GHIPSVIGNLK-SLLQLDLSENQLSGSIPL-SLGNLSSLTVMSLFSNS-------LSGFIPPILGNLKSLSALGLHINQL 335 (725)
Q Consensus 265 ~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~L~~n~l 335 (725)
+..|..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|. +.+.++ .+..+++|+.|++++|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 78888877765 344678889988776554 57789999999999997 666665 688999999999999988
Q ss_pred CCcCccccC---CCcccceeecccCccccccchhh-----ccCCcccEEecccCccCccCC-ccCcCC---CCCcEEeCC
Q 045649 336 NGVIPASIG---NLSSLRLLYLYNNGLYGFVPEEI-----GYLKSIFELDLCTNRLSGAIP-HSISNL---TELVLVNIC 403 (725)
Q Consensus 336 ~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~ls~n~l~~~~~-~~~~~l---~~L~~L~l~ 403 (725)
++..+..+. ..++|+.|++++|++++.+|..+ ..++.|+.+++++|.+ .+| ..+..+ .+|+.++++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence 764332221 24589999999999999999888 7788888888888887 344 233222 345555555
Q ss_pred CCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccC--
Q 045649 404 ENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYG-- 481 (725)
Q Consensus 404 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-- 481 (725)
+|.+.. ... +..+++|++|++++|++++.+|..+..+++|+.|++++|.+++
T Consensus 311 ~n~l~~------------------------~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 364 (520)
T 2z7x_B 311 GTRMVH------------------------MLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364 (520)
T ss_dssp SSCCCC------------------------CCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH
T ss_pred CCcccc------------------------ccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc
Confidence 555432 210 1345566666666666666666666667777777777777665
Q ss_pred CCCcccCCCCCCcEEeCCCCeeeeccccc-ccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhh
Q 045649 482 SIPTEIGDLSKLQVLDLSSNHIVGEIPVQ-LGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIA 560 (725)
Q Consensus 482 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 560 (725)
.+|..+..+++|++|++++|++++.+|.. +..+++| ++|++++|++++..|..+.
T Consensus 365 ~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L------------------------~~L~Ls~N~l~~~~~~~l~ 420 (520)
T 2z7x_B 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL------------------------LSLNMSSNILTDTIFRCLP 420 (520)
T ss_dssp HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC------------------------CEEECCSSCCCGGGGGSCC
T ss_pred cchHHHhhCCCCCEEECCCCcCCcccccchhccCccC------------------------CEEECcCCCCCcchhhhhc
Confidence 44566777777777777777776544432 3344444 4444444444443333332
Q ss_pred cccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccC
Q 045649 561 NLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFI 627 (725)
Q Consensus 561 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 627 (725)
++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..
T Consensus 421 --~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 421 --PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp --TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred --ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence 45666666666665 55666667777777777777776544334677777777777777777553
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-47 Score=443.12 Aligned_cols=466 Identities=18% Similarity=0.202 Sum_probs=272.7
Q ss_pred CCCCEEeCCCCCCCccCCccCcCCCCCCEEEc-cCCcCCcCCCcccCCC-CCCCE-----EEc----------cccccCC
Q 045649 131 SELQYLDLGSNQLTGVIPQEIGHLNQLRSLYF-DVNQLHGSIPPEIGQL-NLINE-----LAL----------CHNNLHG 193 (725)
Q Consensus 131 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l-~~n~l~~~~p~~~~~l-~~L~~-----L~L----------s~n~l~~ 193 (725)
.+++.|+|+++.+.|.+|+.|++|++|++|+| ++|.+.|..|...... ..+.. +.. ....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 45677777777777777777777777777777 6666665533221111 00000 000 0000000
Q ss_pred C-----------CccccCCCCCCCEEEecC--CCCCccCccccCCCCCCCEEEcccCcCcc-----------------cC
Q 045649 194 P-----------IPPSLGNLSNLANFYLNN--NSLFDSIPLVLGNLKSLSTLDLSKNQLSG-----------------LI 243 (725)
Q Consensus 194 ~-----------~~~~l~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~ 243 (725)
. .+........++.+.+.. |.+++ +|..++++++|++|++++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0 000001112222222222 44544 55556666666666666666665 25
Q ss_pred CcCcc--CCCCCceEEeecccccccCCccccCCCCCCEEECcCcc-CCc-cCCccccCCC-------CCCEEEccCCcCC
Q 045649 244 PFSLG--NLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQ-LSG-SIPLSLGNLS-------SLTVMSLFSNSLS 312 (725)
Q Consensus 244 ~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~-------~L~~L~L~~n~l~ 312 (725)
|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.++ +|++|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 55544 55555555555555555555555555555555555555 554 4454433332 5555555555555
Q ss_pred CCCCc--ccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCc-ccEEecccCccCccCCc
Q 045649 313 GFIPP--ILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKS-IFELDLCTNRLSGAIPH 389 (725)
Q Consensus 313 ~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~ls~n~l~~~~~~ 389 (725)
.+|. .+.++++|+.|++++|+++ .+| .+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 4444 4555555555555555555 444 4455555555555555554 44444444444 555555555554 4444
Q ss_pred cCcCCCC--CcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCccccccccc--CCCCCCEEECcCCccccccCcc-cc
Q 045649 390 SISNLTE--LVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFG--YHPNLTFLDFSQNNFYGEISFN-WR 464 (725)
Q Consensus 390 ~~~~l~~--L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~ls~n~l~~~~~~~-~~ 464 (725)
.+..++. |+.|++++|.+.+.+|... ..+. ..++|+.|++++|.++. +|.. +.
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~---------------------~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~ 694 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNIS---------------------CSMDDYKGINASTVTLSYNEIQK-FPTELFA 694 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCS---------------------SCTTTCCCCCEEEEECCSSCCCS-CCHHHHH
T ss_pred hhhccccCCCCEEECcCCcCCCccccch---------------------hhhccccCCCcCEEEccCCcCCc-cCHHHHc
Confidence 4443322 4455555554444333211 0111 22355666666666552 3332 33
Q ss_pred CCCCCcEEeCCCccccCCCCcccC--------CCCCCcEEeCCCCeeeeccccccc--CCCCCCeeeCCCCcCCCCCCcc
Q 045649 465 NFPKLCTFNASMNNIYGSIPTEIG--------DLSKLQVLDLSSNHIVGEIPVQLG--KLFSLTKLILNSNQLSGGIPLE 534 (725)
Q Consensus 465 ~~~~L~~L~l~~n~l~~~~~~~~~--------~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~ 534 (725)
.+++|+.|++++|.++ .+|..+. ++++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..
T Consensus 695 ~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~ 771 (876)
T 4ecn_A 695 TGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ 771 (876)
T ss_dssp TTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred cCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchh
Confidence 5566666666666665 3443332 3348999999999988 6787776 88999999999999986 7888
Q ss_pred cCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCC
Q 045649 535 LGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLE 614 (725)
Q Consensus 535 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 614 (725)
+..+++|+.|+|++|+ ++++|++.+.+|..+.++++|+.|+|++|++ +.+|..+. ++|+
T Consensus 772 l~~L~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~ 830 (876)
T 4ecn_A 772 PLNSSQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLY 830 (876)
T ss_dssp GGGCTTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSC
T ss_pred hhcCCCCCEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCC
Confidence 8889999999999887 6788888888888898899999999999998 67777655 6899
Q ss_pred EEeCCCCcccccCCccccCCCCCCeeeCcCCccc
Q 045649 615 KLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648 (725)
Q Consensus 615 ~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 648 (725)
.|||++|++....+..+.....+..+.+.+|++.
T Consensus 831 ~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 831 ILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp EEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred EEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 9999999888777777766656677777777654
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.9e-44 Score=410.35 Aligned_cols=510 Identities=24% Similarity=0.216 Sum_probs=381.0
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEE
Q 045649 82 ERVISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLY 161 (725)
Q Consensus 82 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 161 (725)
..++.|+|+++.+++..+ .+|..+++|++|||++|.+.+..|.+|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~-~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCH-HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 478999999999986444 7899999999999999999988888999999999999999999987778899999999999
Q ss_pred ccCCcCCcCCCcccCCCCCCCEEEccccccCC-CCccccCCCCCCCEEEecCCCCCccCccccCCCCC----CCEEEccc
Q 045649 162 FDVNQLHGSIPPEIGQLNLINELALCHNNLHG-PIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKS----LSTLDLSK 236 (725)
Q Consensus 162 l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~----L~~L~Ls~ 236 (725)
+++|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|++.+..+..+..+.+ ...++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 99999998777789999999999999999976 46788899999999999999999888887765544 44789999
Q ss_pred CcCcccCCcCccCCCCCceEEeecccccc-cCCccccCCCCCCEEECcCccCC------ccCCccccCCCCCCEEEccCC
Q 045649 237 NQLSGLIPFSLGNLSNLGILYLYSNSLSG-HIPSVIGNLKSLLQLDLSENQLS------GSIPLSLGNLSSLTVMSLFSN 309 (725)
Q Consensus 237 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~------~~~p~~l~~l~~L~~L~L~~n 309 (725)
|.++...+.. .....++.+++.+|.... ..+..+..+..++...+..+... ......+..+..+....+..+
T Consensus 211 n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 211 NPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp CCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred CcccccCccc-ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 9998655544 445567888998886553 33455677888877776544322 222233444445555555443
Q ss_pred cCCCC---CCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecccCccCcc
Q 045649 310 SLSGF---IPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGA 386 (725)
Q Consensus 310 ~l~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~ 386 (725)
..... .+..+..+.+++.+++..+.+. ... .+.....++.|++.+|.+.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~------------------------~~~--~~~~~~~L~~L~l~~~~~~~~ 343 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIE------------------------RVK--DFSYNFGWQHLELVNCKFGQF 343 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEE------------------------ECG--GGGSCCCCSEEEEESCEESSC
T ss_pred hhcccccchhhhhhhhcccccccccccccc------------------------ccc--ccccchhhhhhhcccccccCc
Confidence 32211 1222333344444444444433 221 123334445555555544432
Q ss_pred CCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcc--cccccccCCCCCCEEECcCCccccccCcccc
Q 045649 387 IPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSG--KVYEAFGYHPNLTFLDFSQNNFYGEISFNWR 464 (725)
Q Consensus 387 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 464 (725)
.+. .+..|+.+++..|..... .....+++|+.++++.|.+.. ..+..+....+|+++++..+.... .+..+.
T Consensus 344 ~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~ 417 (635)
T 4g8a_A 344 PTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFL 417 (635)
T ss_dssp CCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCT
T ss_pred Ccc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccc
Confidence 221 233444455554443322 123345666666666666643 234445567778888888777654 345567
Q ss_pred CCCCCcEEeCCCccccCCCC-cccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCC-CCCCcccCCCCCCc
Q 045649 465 NFPKLCTFNASMNNIYGSIP-TEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLS-GGIPLELGSLTELQ 542 (725)
Q Consensus 465 ~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~ 542 (725)
.+++|+.++++.+......+ ..+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+. +..|..+..+++|+
T Consensus 418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~ 497 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 497 (635)
T ss_dssp TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccC
Confidence 78888888888877665543 45788899999999999999888888899999999999999744 45678889999999
Q ss_pred EEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCC-CCCCEEeCCCC
Q 045649 543 YIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNM-KSLEKLNLCHN 621 (725)
Q Consensus 543 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~N 621 (725)
+|+|++|++++..|..|.++++|++|+|++|++++..|..|+++++|++|||++|++++.+|..+..+ ++|++|+|++|
T Consensus 498 ~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred EEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 99999999999889999999999999999999999989999999999999999999999999999888 68999999999
Q ss_pred cccc
Q 045649 622 NLSG 625 (725)
Q Consensus 622 ~l~~ 625 (725)
+++.
T Consensus 578 p~~C 581 (635)
T 4g8a_A 578 DFAC 581 (635)
T ss_dssp CBCC
T ss_pred CCcc
Confidence 9874
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.9e-44 Score=400.60 Aligned_cols=468 Identities=20% Similarity=0.191 Sum_probs=270.7
Q ss_pred CCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEE
Q 045649 129 NLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANF 208 (725)
Q Consensus 129 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 208 (725)
.+...+++|+++|++++ +|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|.++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 34555899999998884 676654 788888888888887777788888888888888888887777888888888888
Q ss_pred EecCCCCCccCccccCCCCCCCEEEcccCcCccc-CCcCccCCCCCceEEeecccccccCCccccCCCCC--CEEECcCc
Q 045649 209 YLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGL-IPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSL--LQLDLSEN 285 (725)
Q Consensus 209 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~Ls~n 285 (725)
++++|.+. .+|.. .+++|++|++++|.+++. .|..++++++|++|++++|.+++. .+..+++| ++|++++|
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence 88888875 45554 678888888888888763 356777788888888888777643 23444444 77777777
Q ss_pred cC--CccCCccccCCC-CCCEEEccCCcCCCCCCc-ccccCCCCCcccccCccCCC----cCccccCCCcccceeecccC
Q 045649 286 QL--SGSIPLSLGNLS-SLTVMSLFSNSLSGFIPP-ILGNLKSLSALGLHINQLNG----VIPASIGNLSSLRLLYLYNN 357 (725)
Q Consensus 286 ~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n 357 (725)
.+ ++..|..+..+. ..-.++++.|.+.+.++. .+..+++|+.+++++|+... .....+..+++|+.+++.++
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 77 666666555543 111345555555443332 23344555555555543110 01122334444444444444
Q ss_pred cccccc----chhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcc
Q 045649 358 GLYGFV----PEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSG 433 (725)
Q Consensus 358 ~l~~~~----~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 433 (725)
.+.+.. +..+ ..++|++|++++|.++|.+|..+... ....++.|+.+++..+.+
T Consensus 260 ~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~-------------------~~~~L~~L~~~~~~~~~~-- 317 (562)
T 3a79_B 260 ETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTY-------------------SETALKSLMIEHVKNQVF-- 317 (562)
T ss_dssp EECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCC-------------------CSCSCCEEEEEEEEECCC--
T ss_pred cCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhc-------------------ccccchheehhhccccee--
Confidence 333211 1111 12244444444444444444333000 003333333333333333
Q ss_pred ccc-cccc---CCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccc
Q 045649 434 KVY-EAFG---YHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPV 509 (725)
Q Consensus 434 ~~~-~~~~---~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 509 (725)
.+| ..+. ...++++|++++|.+..... ...+++|++|++++|.+++. .|.
T Consensus 318 ~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~------------------------~~~ 371 (562)
T 3a79_B 318 LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDS------------------------VFQ 371 (562)
T ss_dssp SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTT------------------------TTT
T ss_pred ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccc------------------------hhh
Confidence 111 1111 12456666666665532110 13344444444444444444 444
Q ss_pred cccCCCCCCeeeCCCCcCCCC--CCcccCCCCCCcEEEccCCcccccch-hhhhcccCCCeeeCcCCcCCcCCchhhhcC
Q 045649 510 QLGKLFSLTKLILNSNQLSGG--IPLELGSLTELQYIDLSANKLRSWIP-KSIANLLKLYYLNLSNNQFSQKIPIEVEKL 586 (725)
Q Consensus 510 ~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 586 (725)
.+..+++|++|++++|++++. +|..+..+++|++|++++|.+++.+| ..+..+++|++|++++|++++.+|..+.
T Consensus 372 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-- 449 (562)
T 3a79_B 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-- 449 (562)
T ss_dssp TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--
T ss_pred hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--
Confidence 444444455555555544432 12334555555555555555555222 3355566666666666666655554443
Q ss_pred CCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCCCCC
Q 045649 587 IHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTV 656 (725)
Q Consensus 587 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~ 656 (725)
++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++.|.+|..+.
T Consensus 450 ~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 57788888888876 4555556888888888888888844333488888899999999999888875443
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.4e-44 Score=400.00 Aligned_cols=462 Identities=20% Similarity=0.183 Sum_probs=327.2
Q ss_pred CCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEE
Q 045649 105 SFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINEL 184 (725)
Q Consensus 105 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 184 (725)
.+...+++|+++|.+++ +|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|.+|+++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 34455999999999975 777664 899999999999998888899999999999999999999889999999999999
Q ss_pred EccccccCCCCccccCCCCCCCEEEecCCCCCc-cCccccCCCCCCCEEEcccCcCcccCCcCccCCCCC--ceEEeecc
Q 045649 185 ALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFD-SIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNL--GILYLYSN 261 (725)
Q Consensus 185 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L--~~L~L~~n 261 (725)
++++|.++ .+|.. .+++|++|++++|.+.+ .+|..++++++|++|++++|.+++. .+..+++| +.|++++|
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence 99999998 56666 89999999999999977 4568999999999999999999863 45666666 99999999
Q ss_pred cc--cccCCccccCCC-CCCEEECcCccCCccCCc-cccCCCCCCEEEccCCcC-----CCCCCcccccCCCCCcccccC
Q 045649 262 SL--SGHIPSVIGNLK-SLLQLDLSENQLSGSIPL-SLGNLSSLTVMSLFSNSL-----SGFIPPILGNLKSLSALGLHI 332 (725)
Q Consensus 262 ~l--~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l-----~~~~~~~l~~l~~L~~L~L~~ 332 (725)
.+ ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|.. .+. ...+..+++|+.+++.+
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecC
Confidence 99 888888887765 122568888988776554 456788999999999852 222 23467788999999988
Q ss_pred ccCCCcC----ccccCCCcccceeecccCccccccchhh-----ccCCcccEEecccCccCccCCc-cCcCCCCCcEEeC
Q 045649 333 NQLNGVI----PASIGNLSSLRLLYLYNNGLYGFVPEEI-----GYLKSIFELDLCTNRLSGAIPH-SISNLTELVLVNI 402 (725)
Q Consensus 333 n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l 402 (725)
+.+.+.. +..+ ..++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .+|. .+..+
T Consensus 259 ~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~-------- 327 (562)
T 3a79_B 259 IETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSV-------- 327 (562)
T ss_dssp EEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHH--------
T ss_pred CcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhh--------
Confidence 8776532 2222 23589999999999999888876 5566666666666655 2331 11110
Q ss_pred CCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCC
Q 045649 403 CENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGS 482 (725)
Q Consensus 403 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 482 (725)
....+|++|++++|.+..... ...+++|++|++++|.+++.++..+..+++|+.|++++|.+++.
T Consensus 328 -------------~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 392 (562)
T 3a79_B 328 -------------FAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392 (562)
T ss_dssp -------------HHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT
T ss_pred -------------hccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc
Confidence 011345555555555432211 14566777777777777776676666666666666666655542
Q ss_pred --CCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhh
Q 045649 483 --IPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIA 560 (725)
Q Consensus 483 --~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 560 (725)
+|..+..+++|++|++++|++++.+|. ..+..+++|++|++++|++++..|..+.
T Consensus 393 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 449 (562)
T 3a79_B 393 FKVALMTKNMSSLETLDVSLNSLNSHAYD-----------------------RTCAWAESILVLNLSSNMLTGSVFRCLP 449 (562)
T ss_dssp THHHHTTTTCTTCCEEECTTSCCBSCCSS-----------------------CCCCCCTTCCEEECCSSCCCGGGGSSCC
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCccCh-----------------------hhhcCcccCCEEECCCCCCCcchhhhhc
Confidence 233344444444444444444432221 2344556666666666666554444332
Q ss_pred cccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCC
Q 045649 561 NLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIP 628 (725)
Q Consensus 561 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 628 (725)
++|++|++++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|++|++++|++.+..|
T Consensus 450 --~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 450 --PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp --TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred --CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 56777777777776 566666677788888888888875444447778888888888888876543
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.1e-41 Score=371.16 Aligned_cols=395 Identities=19% Similarity=0.194 Sum_probs=287.4
Q ss_pred CCEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCccCCccC-CccccCCCCCCEEEcc
Q 045649 229 LSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSI-PLSLGNLSSLTVMSLF 307 (725)
Q Consensus 229 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~ 307 (725)
-+.++.+++.++ .+|. + .++|++|++++|.+++..|..++++++|++|++++|.+.+.+ +..+..+++|++|+++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 346777777776 3454 2 267888888888888777888888888888888888887554 4567888888888888
Q ss_pred CCcCCCCCCcccccCCCCCcccccCccCCCcCccc--cCCCcccceeecccCccccccchh-hccCCcccEEecccCccC
Q 045649 308 SNSLSGFIPPILGNLKSLSALGLHINQLNGVIPAS--IGNLSSLRLLYLYNNGLYGFVPEE-IGYLKSIFELDLCTNRLS 384 (725)
Q Consensus 308 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~ls~n~l~ 384 (725)
+|.+++..|..+.++++|++|++++|++++..+.. +..+++|++|++++|++++..|.. +..+++|++|++++|.++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 88888777888888888888888888887754443 777888888888888887776665 677788888888888887
Q ss_pred ccCCccCcCC--CCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCcc
Q 045649 385 GAIPHSISNL--TELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFN 462 (725)
Q Consensus 385 ~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 462 (725)
+..+..+..+ .+|+.+++++|.+.+..+..+. ......+..+++|++|++++|++++..+..
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~----------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG----------------WEKCGNPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT----------------HHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred ccChhhhhccccccccccccccCcccccchhhcc----------------ccccccccccceeeeEecCCCcccccchhh
Confidence 7777666554 5666777777766554333221 000011122334444444444444443333
Q ss_pred ccCC---CCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeeccccccc--CCCCCCeeeCCCCcCCCCCCcccCC
Q 045649 463 WRNF---PKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLG--KLFSLTKLILNSNQLSGGIPLELGS 537 (725)
Q Consensus 463 ~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~l~~ 537 (725)
+... ++|+.+++++|...+... ..+.+.+..+..+. ..++|++|++++|.+.+..|..+..
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 297 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT
T ss_pred hhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhccc
Confidence 3221 444555555444332210 01111111112222 2357888888888888888888888
Q ss_pred CCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEe
Q 045649 538 LTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLN 617 (725)
Q Consensus 538 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 617 (725)
+++|++|++++|.+++..|..|.++++|++|++++|++++..|..++.+++|++|+|++|++++..|..+..+++|++|+
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence 89999999999999988888899999999999999999888889999999999999999999999999999999999999
Q ss_pred CCCCcccccCCccccCCCCCCeeeCcCCcccccCCCCCCc
Q 045649 618 LCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTVF 657 (725)
Q Consensus 618 L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 657 (725)
+++|++++..+..|..+++|++|++++|+++|.+|...++
T Consensus 378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 9999999887888899999999999999999999965444
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.3e-42 Score=357.85 Aligned_cols=292 Identities=31% Similarity=0.519 Sum_probs=197.8
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCc--ccceeeCCC---CCEEEEEcCCCCCcc-
Q 045649 23 SDSTKEALALLKWKRSLQNQNSSLLTSWTLYPANATNVPSYSKAKLSPCA--WVGISCNQA---ERVISINLSSMGLNG- 96 (725)
Q Consensus 23 ~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~--w~gv~c~~~---~~v~~l~l~~~~l~~- 96 (725)
.|.++|++||++||+++.+ |. .+++|. .++ +||. |.||+|+.. ++|++++++++.+.|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~-~~-~l~~W~----~~~----------~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~ 65 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGN-PT-TLSSWL----PTT----------DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTC-CG-GGTTCC----TTS----------CTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSC
T ss_pred CCCHHHHHHHHHHHHhcCC-cc-cccCCC----CCC----------CCCcCCCcceEeCCCCCCceEEEEECCCCCccCC
Confidence 5788999999999999964 43 789996 556 8998 999999853 789999998888887
Q ss_pred -ccCcccccCCCCCCEEECCC-CCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcc
Q 045649 97 -TLQEFAFSSFPHLVRLNLSF-NIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPE 174 (725)
Q Consensus 97 -~~~~~~l~~l~~L~~L~Ls~-n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 174 (725)
.++ ..+..+++|++|++++ |.+.+.+|..++++++|++|++++|.+++.+|..|.++++|++|++++|.+.+.+|..
T Consensus 66 ~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 144 (313)
T 1ogq_A 66 YPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp EECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred cccC-hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence 666 5677777777777774 7777777777777777777777777777777777777777777777777777666766
Q ss_pred cCCCCCCCEEEccccccCCCCccccCCCC-CCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCC
Q 045649 175 IGQLNLINELALCHNNLHGPIPPSLGNLS-NLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNL 253 (725)
Q Consensus 175 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 253 (725)
++++++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.+|..+..++ |++|++++|.+++..|..+..+++|
T Consensus 145 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L 223 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCC
T ss_pred HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCC
Confidence 76677777777777766666666666665 666666666666666666665554 6666666666665555555666666
Q ss_pred ceEEeecccccccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCc
Q 045649 254 GILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHIN 333 (725)
Q Consensus 254 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 333 (725)
+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|.+++.+|.. ..+++|+.+++++|
T Consensus 224 ~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp SEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred CEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence 6666666665544433 455555555555555555555555555555555555555555555443 44455555555555
Q ss_pred c
Q 045649 334 Q 334 (725)
Q Consensus 334 ~ 334 (725)
.
T Consensus 302 ~ 302 (313)
T 1ogq_A 302 K 302 (313)
T ss_dssp S
T ss_pred C
Confidence 4
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1e-40 Score=365.78 Aligned_cols=390 Identities=24% Similarity=0.189 Sum_probs=320.2
Q ss_pred CCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccC-CccccCCCCCCEEECc
Q 045649 205 LANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHI-PSVIGNLKSLLQLDLS 283 (725)
Q Consensus 205 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls 283 (725)
-+.++.+++.+ ..+|. + .++|++|++++|.+++..|..++++++|++|++++|.+.+.+ +..|.++++|++|+++
T Consensus 12 ~~~~~c~~~~l-~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGL-HQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCC-SSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCc-ccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 34677777776 44565 3 278999999999999988999999999999999999997555 5679999999999999
Q ss_pred CccCCccCCccccCCCCCCEEEccCCcCCCCCCcc--cccCCCCCcccccCccCCCcCccc-cCCCcccceeecccCccc
Q 045649 284 ENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPI--LGNLKSLSALGLHINQLNGVIPAS-IGNLSSLRLLYLYNNGLY 360 (725)
Q Consensus 284 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~ 360 (725)
+|++++..|..++++++|++|++++|.+++..+.. +..+++|++|++++|++++..|.. +..+++|++|++++|+++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 99999888999999999999999999998865554 889999999999999999887776 889999999999999999
Q ss_pred cccchhhccC--CcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCccccccc
Q 045649 361 GFVPEEIGYL--KSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEA 438 (725)
Q Consensus 361 ~~~~~~l~~l--~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 438 (725)
+..+..+..+ ..++.+++++|.+.+..+..+.. .....+..+++|++|++++|++++..+..
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------------EKCGNPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------HHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred ccChhhhhccccccccccccccCcccccchhhccc----------------cccccccccceeeeEecCCCcccccchhh
Confidence 9888888765 78999999999998655443220 01112334456666666666666665555
Q ss_pred ccC---CCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccC--CCCCCcEEeCCCCeeeecccccccC
Q 045649 439 FGY---HPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIG--DLSKLQVLDLSSNHIVGEIPVQLGK 513 (725)
Q Consensus 439 ~~~---~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~ 513 (725)
+.. .++++.|++++|...+... ..+.+.+..+..+. ..++|++|++++|++++..|..+..
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 297 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT
T ss_pred hhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhccc
Confidence 432 3677788887776554311 11112222222222 2368999999999999888999999
Q ss_pred CCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEe
Q 045649 514 LFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELD 593 (725)
Q Consensus 514 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 593 (725)
+++|++|++++|++.+..|..+..+++|++|++++|.+++..|..+.++++|++|+|++|++++..|..|..+++|++|+
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence 99999999999999988888999999999999999999998899999999999999999999998899999999999999
Q ss_pred CCCCCCCccCCccccCCCCCCEEeCCCCcccccCC
Q 045649 594 LSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIP 628 (725)
Q Consensus 594 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 628 (725)
+++|++++..+..+..+++|++|++++|++++..|
T Consensus 378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999999888888999999999999999998877
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.9e-41 Score=366.92 Aligned_cols=423 Identities=25% Similarity=0.267 Sum_probs=222.9
Q ss_pred CCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEE
Q 045649 129 NLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANF 208 (725)
Q Consensus 129 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 208 (725)
+.++|++|++++|.+ |.+|++++++++|++|++++|.+.|.+|.+++++++|+.+++.+|.. .++++|
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 457788888888887 67788888888888888888888777888887777777666665532 457888
Q ss_pred EecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCccCC
Q 045649 209 YLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLS 288 (725)
Q Consensus 209 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 288 (725)
++++|.+++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|+++
T Consensus 77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp ECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred EecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence 888887755 3331 3678888888888876 4543 3678888888887774 3321 157888888888777
Q ss_pred ccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhc
Q 045649 289 GSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIG 368 (725)
Q Consensus 289 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 368 (725)
+ +| .++.+++|++|++++|++++ +|..+ ++|++|++++|++++ +| .++.+++|+.|++++|++++ +|..
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-- 213 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-- 213 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC--
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC--
Confidence 5 56 57777788888888777765 44332 467777777777765 34 46666667777777666664 2321
Q ss_pred cCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEE
Q 045649 369 YLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFL 448 (725)
Q Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 448 (725)
.++|++|++++|.++ .+| .+..+++|+.+++++|++.+ +|.. .++|++|
T Consensus 214 -~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---------------------------~~~L~~L 262 (454)
T 1jl5_A 214 -PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---------------------------PPSLEAL 262 (454)
T ss_dssp -CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---------------------------CTTCCEE
T ss_pred -cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---------------------------ccccCEE
Confidence 135666666666665 444 25555555555555555543 2221 2345555
Q ss_pred ECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCC
Q 045649 449 DFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLS 528 (725)
Q Consensus 449 ~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 528 (725)
++++|++++ +|.. .++|+.|++++|.+++. |. -.++|++|++++|++++. +. -.++|++|++++|+++
T Consensus 263 ~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 263 NVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLI 330 (454)
T ss_dssp ECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCS
T ss_pred ECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCccc
Confidence 555555543 2221 24555566666555541 11 114677777777777642 21 1247888888888887
Q ss_pred CCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCc--CCchhhhcCCCCCEEeCCCCCCCccCCcc
Q 045649 529 GGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQ--KIPIEVEKLIHLSELDLSYNFLDEEMPFQ 606 (725)
Q Consensus 529 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 606 (725)
+ +|.. +++|++|++++|.+++ +|. .+++|++|++++|++++ .+|..++. ++.|.+.+.+|..
T Consensus 331 ~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~ 394 (454)
T 1jl5_A 331 E-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL 394 (454)
T ss_dssp C-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--------
T ss_pred c-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc
Confidence 5 5543 4788888888888886 454 46788888888888887 66765543 2346677777753
Q ss_pred ccCCCCCCEEeCCCCcccc--cCCccccCCCCCCeeeCcCCcccccCCCC
Q 045649 607 ICNMKSLEKLNLCHNNLSG--FIPRCFEGMHNLSHIDISYNELQGPIPNS 654 (725)
Q Consensus 607 l~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 654 (725)
+++|++|++++|++++ .+|.+ ++.|.+.+|.+.+.+|..
T Consensus 395 ---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 395 ---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp --------------------------------------------------
T ss_pred ---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCccccC
Confidence 5789999999999997 56644 667778899988877643
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.5e-41 Score=365.43 Aligned_cols=428 Identities=24% Similarity=0.264 Sum_probs=259.9
Q ss_pred ccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCC
Q 045649 103 FSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLIN 182 (725)
Q Consensus 103 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 182 (725)
-.+.++|++|++++|.+ |.+|++++++++|++|++++|.+.|.+|..++++++|+.+++..|.. .+++
T Consensus 7 ~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~ 74 (454)
T 1jl5_A 7 NVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAH 74 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCS
T ss_pred ccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCC
Confidence 34568999999999999 89999999999999999999999999999999999988877776642 4678
Q ss_pred EEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeeccc
Q 045649 183 ELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNS 262 (725)
Q Consensus 183 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 262 (725)
+|++++|.+++ +|.. .++|++|++++|.+.+ +|.. +++|++|++++|.+++. +.. .++|++|++++|.
T Consensus 75 ~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~ 142 (454)
T 1jl5_A 75 ELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQ 142 (454)
T ss_dssp EEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSC
T ss_pred EEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCC
Confidence 88888888875 3432 3689999999998877 6643 47899999999998853 321 2699999999999
Q ss_pred ccccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccc
Q 045649 263 LSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPAS 342 (725)
Q Consensus 263 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 342 (725)
+++ +| .++++++|++|++++|++++ +|..+ .+|++|++++|.+++ +| .++.+++|++|++++|++++ +|..
T Consensus 143 l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~ 213 (454)
T 1jl5_A 143 LEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL 213 (454)
T ss_dssp CSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC
T ss_pred CCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC
Confidence 996 77 59999999999999999985 66543 599999999999997 55 68999999999999999986 4433
Q ss_pred cCCCcccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCc
Q 045649 343 IGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLE 422 (725)
Q Consensus 343 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 422 (725)
. ++|++|++++|.++ .+|. +..+++|++|++++|++++ +|.. .++|+.+++++|.+.+ +|.. .++|+
T Consensus 214 ~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~ 280 (454)
T 1jl5_A 214 P---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLT 280 (454)
T ss_dssp C---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred c---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCC
Confidence 2 58999999999998 5664 8899999999999999985 5543 4789999999999876 4443 36777
Q ss_pred EEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCe
Q 045649 423 RVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNH 502 (725)
Q Consensus 423 ~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 502 (725)
+|++++|++++... ..++|++|++++|++++.. .+ .++|++|++++|+
T Consensus 281 ~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i~-----~~-----------------------~~~L~~L~Ls~N~ 328 (454)
T 1jl5_A 281 FLDVSENIFSGLSE----LPPNLYYLNASSNEIRSLC-----DL-----------------------PPSLEELNVSNNK 328 (454)
T ss_dssp EEECCSSCCSEESC----CCTTCCEEECCSSCCSEEC-----CC-----------------------CTTCCEEECCSSC
T ss_pred EEECcCCccCcccC----cCCcCCEEECcCCcCCccc-----CC-----------------------cCcCCEEECCCCc
Confidence 77777777765311 1245666666666655311 11 1245555555555
Q ss_pred eeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccc--cchhhhhcccCCCeeeCcCCcCCcCCc
Q 045649 503 IVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRS--WIPKSIANLLKLYYLNLSNNQFSQKIP 580 (725)
Q Consensus 503 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p 580 (725)
+++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|..+.. ++.|.+.+.+|
T Consensus 329 l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~ 392 (454)
T 1jl5_A 329 LIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVP 392 (454)
T ss_dssp CSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC------
T ss_pred ccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccc
Confidence 553 3332 356666666666666 3444 35667777777777766 44444332 23355666666
Q ss_pred hhhhcCCCCCEEeCCCCCCCc--cCCccccCCCCCCEEeCCCCcccccCCccccC
Q 045649 581 IEVEKLIHLSELDLSYNFLDE--EMPFQICNMKSLEKLNLCHNNLSGFIPRCFEG 633 (725)
Q Consensus 581 ~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 633 (725)
.. +++|++|++++|++++ .+| ++++.|.+.+|.+.+.+|.....
T Consensus 393 ~~---~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 393 EL---PQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp -------------------------------------------------------
T ss_pred cc---cCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCccccCHHH
Confidence 53 4577778888887776 444 34566677777777666655443
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.4e-38 Score=341.55 Aligned_cols=364 Identities=20% Similarity=0.224 Sum_probs=210.7
Q ss_pred cCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCcc
Q 045649 191 LHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSV 270 (725)
Q Consensus 191 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 270 (725)
..+..+..++++++|++|++++|.+.+. | .++.+++|++|++++|.+++. | ++.+++|++|++++|.+++. +
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--
T ss_pred cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--
Confidence 3444455666777777777777777653 4 577777777777777777764 2 66777777777777777653 3
Q ss_pred ccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCcccc
Q 045649 271 IGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLR 350 (725)
Q Consensus 271 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 350 (725)
++++++|++|++++|++++ +| ++.+++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 6677777777777777765 33 66677777777777776653 2556666666666666444333 245555666
Q ss_pred eeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCc
Q 045649 351 LLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNN 430 (725)
Q Consensus 351 ~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 430 (725)
.|++++|++++. | +..+++|+.|++++|.+++. .+..+++|+.|++++|++++ +| +..
T Consensus 174 ~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~------------- 231 (457)
T 3bz5_A 174 TLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTP------------- 231 (457)
T ss_dssp EEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTT-------------
T ss_pred EEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccc-------------
Confidence 666666665542 2 44555555555555555542 24444555555555554444 22 344
Q ss_pred CcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeeccccc
Q 045649 431 LSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQ 510 (725)
Q Consensus 431 l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 510 (725)
+++|++|++++|++++.. ...+++|+.|++++| +|+.|++++|.+.+.+|
T Consensus 232 -----------l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~-- 281 (457)
T 3bz5_A 232 -----------LTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ-- 281 (457)
T ss_dssp -----------CTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--
T ss_pred -----------cCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--
Confidence 444444555544444432 233444444444432 23445555555544444
Q ss_pred ccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCC
Q 045649 511 LGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLS 590 (725)
Q Consensus 511 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 590 (725)
++.+++|+.|++++|...+.+|. ..++|+.|++++| ++|++|++++|++++. + ++.+++|+
T Consensus 282 ~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~ 342 (457)
T 3bz5_A 282 AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLK 342 (457)
T ss_dssp CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCS
T ss_pred ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCc
Confidence 34556666666666655555442 2334444444443 4566666666666653 2 66666666
Q ss_pred EEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCCC
Q 045649 591 ELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS 654 (725)
Q Consensus 591 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 654 (725)
.|++++|++++ ++.|+.|++++|.++|. ..+..|..+++++|+++|.||..
T Consensus 343 ~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 343 SLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp EEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred EEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 66666666654 23455556666666655 23345666667777777776653
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9.7e-38 Score=339.52 Aligned_cols=324 Identities=20% Similarity=0.215 Sum_probs=182.2
Q ss_pred CCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccc
Q 045649 143 LTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLV 222 (725)
Q Consensus 143 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 222 (725)
..+..+..++++++|++|++++|.+.+. | .++.+++|++|++++|.+++. | ++.+++|++|++++|.+.+. +
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--
T ss_pred cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--
Confidence 3344455677778888888888877753 4 577777777777777777753 3 66777777777777777553 2
Q ss_pred cCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCccCCccCCccccCCCCCC
Q 045649 223 LGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLT 302 (725)
Q Consensus 223 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 302 (725)
++++++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++++++|++|++++|+..+.+ .+..+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 66777777777777777653 2 66666777777777766642 2 556666666666666444333 355556666
Q ss_pred EEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecccCc
Q 045649 303 VMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNR 382 (725)
Q Consensus 303 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~ 382 (725)
+|++++|.+++. | +..+++|+.|++++|++++. .+. .+++|++|++++|+
T Consensus 174 ~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~------------------------~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 174 TLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLN------------------------QNIQLTFLDCSSNK 223 (457)
T ss_dssp EEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCT------------------------TCTTCSEEECCSSC
T ss_pred EEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccc------------------------cCCCCCEEECcCCc
Confidence 666666655542 2 44455555555555555432 134 44455555555555
Q ss_pred cCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCcc
Q 045649 383 LSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFN 462 (725)
Q Consensus 383 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 462 (725)
+++ +| +..+++|+.+++++|++++.. +..+++|+.++++.| +|+.|++++|.+.+.+|
T Consensus 224 l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~-- 281 (457)
T 3bz5_A 224 LTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ-- 281 (457)
T ss_dssp CSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--
T ss_pred ccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--
Confidence 543 23 444555555555555554432 234455555555443 34455556665555444
Q ss_pred ccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCc
Q 045649 463 WRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQ 542 (725)
Q Consensus 463 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 542 (725)
+..+++|+.|++++|...+.+|. ..++|+.|++++| ++|++|++++|++++. + +..+++|+
T Consensus 282 ~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~ 342 (457)
T 3bz5_A 282 AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLK 342 (457)
T ss_dssp CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCS
T ss_pred ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCc
Confidence 24455555555555555444442 2233343333332 3455555555555542 1 44555555
Q ss_pred EEEccCCcccc
Q 045649 543 YIDLSANKLRS 553 (725)
Q Consensus 543 ~L~Ls~n~l~~ 553 (725)
.|++++|++++
T Consensus 343 ~L~l~~N~l~~ 353 (457)
T 3bz5_A 343 SLSCVNAHIQD 353 (457)
T ss_dssp EEECCSSCCCB
T ss_pred EEECCCCCCCC
Confidence 55555555544
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.3e-38 Score=345.50 Aligned_cols=325 Identities=20% Similarity=0.199 Sum_probs=247.1
Q ss_pred ccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEcc
Q 045649 348 SLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFN 427 (725)
Q Consensus 348 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 427 (725)
+++.|++++|++++..+..+..+++|++|++++|.+++..|..|.++++|+.|++++|.+.+..+..|.++++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 55566666666655555556666666666666666665556666666666666666666655555556666777777777
Q ss_pred CCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecc
Q 045649 428 QNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEI 507 (725)
Q Consensus 428 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 507 (725)
+|++++..+..|..+++|++|++++|.+++..+..|.++++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence 77777666667777777777777777777777777777778888888887777766667888888888888888888777
Q ss_pred cccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCC
Q 045649 508 PVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLI 587 (725)
Q Consensus 508 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 587 (725)
+..+..+++|++|++++|...+.+|.......+|++|++++|.+++..+..+..+++|++|+|++|++++..+..|..++
T Consensus 193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (477)
T 2id5_A 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272 (477)
T ss_dssp TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence 77888888888888888887777777666667899999999998886667888889999999999999888888888899
Q ss_pred CCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCCCCCcCc---eeccc
Q 045649 588 HLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTVFKD---AHVEG 664 (725)
Q Consensus 588 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~---~~~~g 664 (725)
+|++|+|++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++.+.++..+.+.+ ..+.+
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~ 352 (477)
T 2id5_A 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNR 352 (477)
T ss_dssp TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTT
T ss_pred cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCc
Confidence 999999999999888888889999999999999999888778888888999999999999887664433222 25666
Q ss_pred CCCCCCCC
Q 045649 665 NKGLCGNV 672 (725)
Q Consensus 665 n~~lc~~~ 672 (725)
+...|..|
T Consensus 353 ~~~~C~~p 360 (477)
T 2id5_A 353 QQPTCATP 360 (477)
T ss_dssp CCCBEEES
T ss_pred cCceeCCc
Confidence 77777544
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.5e-36 Score=332.85 Aligned_cols=345 Identities=28% Similarity=0.418 Sum_probs=190.9
Q ss_pred CCCCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEE
Q 045649 226 LKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMS 305 (725)
Q Consensus 226 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 305 (725)
+++++.|+++++.+.. +| .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++..+ +..+++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 4677777777777764 33 36667777777777777764433 6677777777777777664433 66666677777
Q ss_pred ccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecccCccCc
Q 045649 306 LFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSG 385 (725)
Q Consensus 306 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 385 (725)
+++|.+++..+ +..+++|++|++++|.+.+. + .+..+++|+.|+++ |.+.+.. .+..+++|++|++++|.+++
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCC
Confidence 76666665422 55666666666666665542 2 35555555555554 2232221 14444555555555554442
Q ss_pred cCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccC
Q 045649 386 AIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRN 465 (725)
Q Consensus 386 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 465 (725)
. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..
T Consensus 192 ------------------------~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~ 241 (466)
T 1o6v_A 192 ------------------------I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLAS 241 (466)
T ss_dssp ------------------------C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGG
T ss_pred ------------------------C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhc
Confidence 1 123444455555555555444333 33455555555555555432 23444
Q ss_pred CCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEE
Q 045649 466 FPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYID 545 (725)
Q Consensus 466 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 545 (725)
+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++.+..+ +..+++|++|+
T Consensus 242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 315 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence 5555555555555544433 4555556666666665554332 4555556666666665554322 45555666666
Q ss_pred ccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccc
Q 045649 546 LSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSG 625 (725)
Q Consensus 546 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 625 (725)
+++|++++..| +..+++|++|++++|++++. ..+..+++|++|++++|++++.+| +..+++|+.|++++|++++
T Consensus 316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 66666655433 45556666666666665543 345555666666666666655554 5555666666666665554
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.9e-36 Score=332.20 Aligned_cols=345 Identities=29% Similarity=0.402 Sum_probs=261.9
Q ss_pred CCCCceEEeecccccccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCccc
Q 045649 250 LSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALG 329 (725)
Q Consensus 250 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 329 (725)
+++++.|++.++.+. .+|. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|+
T Consensus 45 l~~l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 456666666666665 3342 5566666666666666654322 5566666666666666554433 55555555555
Q ss_pred ccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccC
Q 045649 330 LHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFG 409 (725)
Q Consensus 330 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 409 (725)
+++|.+++..+ +..+++|++|++++|.+.+. + .+..+++|+.++++ +.+.+
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-------------------------~-~~~~l~~L~~L~l~-~~~~~ 169 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDI-------------------------S-ALSGLTSLQQLSFG-NQVTD 169 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-------------------------G-GGTTCTTCSEEEEE-ESCCC
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCCC-------------------------h-hhccCCcccEeecC-CcccC
Confidence 55555553321 44455555555555544432 1 24445555555553 22222
Q ss_pred cCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCC
Q 045649 410 PIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGD 489 (725)
Q Consensus 410 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 489 (725)
. ..+.++++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++. ..+..
T Consensus 170 ~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~ 241 (466)
T 1o6v_A 170 L--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLAS 241 (466)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGG
T ss_pred c--hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhc
Confidence 2 2377888999999999998765 347889999999999999987765 77899999999999999864 46788
Q ss_pred CCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeee
Q 045649 490 LSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLN 569 (725)
Q Consensus 490 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 569 (725)
+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|+
T Consensus 242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 315 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence 9999999999999987655 8899999999999999996544 8899999999999999998654 88999999999
Q ss_pred CcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccc
Q 045649 570 LSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQG 649 (725)
Q Consensus 570 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 649 (725)
+++|++++..| +..+++|++|++++|++++. ..+.++++|+.|++++|++++..| +..+++|++|++++|++++
T Consensus 316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999998766 78999999999999999886 468999999999999999998887 8999999999999999998
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.3e-35 Score=323.80 Aligned_cols=320 Identities=19% Similarity=0.195 Sum_probs=212.5
Q ss_pred CEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEcccc
Q 045649 110 VRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHN 189 (725)
Q Consensus 110 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n 189 (725)
+.++.+++.+. .+|..+. +++++|+|++|++++..|..|.++++|++|++++|.+.+..|.+|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 56777777664 4565543 67888888888888777788888888888888888888777888888888888888888
Q ss_pred ccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCc
Q 045649 190 NLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPS 269 (725)
Q Consensus 190 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 269 (725)
.+++..+..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 88766556677788888888888888777777777788888888888887777777777777777777777777755555
Q ss_pred cccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCccc
Q 045649 270 VIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSL 349 (725)
Q Consensus 270 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 349 (725)
.+.++++|+.|++++|.+.+..+..+..+++|++|++++|...+.++....... +|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~------------------------~L 226 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL------------------------NL 226 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC------------------------CC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCc------------------------cc
Confidence 677777777777777777666555666666666666666655544444333333 44
Q ss_pred ceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCC
Q 045649 350 RLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQN 429 (725)
Q Consensus 350 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 429 (725)
+.|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 44555555444333334444555555555555555444444555555555555555555544555555555555555555
Q ss_pred cCcccccccccCCCCCCEEECcCCccc
Q 045649 430 NLSGKVYEAFGYHPNLTFLDFSQNNFY 456 (725)
Q Consensus 430 ~l~~~~~~~~~~~~~L~~L~ls~n~l~ 456 (725)
++++..+..|..+++|++|++++|.+.
T Consensus 307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 307 QLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cCceeCHhHcCCCcccCEEEccCCCcc
Confidence 555555555555555555555555554
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.6e-35 Score=312.04 Aligned_cols=311 Identities=19% Similarity=0.208 Sum_probs=217.4
Q ss_pred cCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCE
Q 045649 104 SSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINE 183 (725)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 183 (725)
..++++++|+++++.+....+..+..+++|++|++++|.+++..+..|+.+++|++|++++|.+.+..|..|+++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 45688999999999876554455788999999999999998777778999999999999999998887888899999999
Q ss_pred EEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeecccc
Q 045649 184 LALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSL 263 (725)
Q Consensus 184 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 263 (725)
|++++|.++...+..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+++. .+..+++|+.|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 99999988855445568888999999999988887777888888899999988888754 356678888888888877
Q ss_pred cccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCcccc
Q 045649 264 SGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASI 343 (725)
Q Consensus 264 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 343 (725)
++ +...++|++|++++|.++.. |.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 63 23345778888888877643 322 235677777777777653 456666666666666666666656666
Q ss_pred CCCcccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcE
Q 045649 344 GNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLER 423 (725)
Q Consensus 344 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 423 (725)
..+++|+.|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+... + +..+++|++
T Consensus 269 ~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~ 343 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN 343 (390)
T ss_dssp TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCE
Confidence 666666666666666654 2334445556666666666555 3344444445555555555554332 1 333344444
Q ss_pred EEccCCcCc
Q 045649 424 VRFNQNNLS 432 (725)
Q Consensus 424 L~l~~n~l~ 432 (725)
|++++|.+.
T Consensus 344 L~l~~N~~~ 352 (390)
T 3o6n_A 344 LTLSHNDWD 352 (390)
T ss_dssp EECCSSCEE
T ss_pred EEcCCCCcc
Confidence 444444433
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.6e-34 Score=324.79 Aligned_cols=311 Identities=19% Similarity=0.211 Sum_probs=225.3
Q ss_pred cCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCE
Q 045649 104 SSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINE 183 (725)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 183 (725)
..+++++.+++++|.+....+..+..+++|++|++++|.+++..|..|+.+++|++|++++|.+.+..|..|+++++|++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 35678999999999887666666788999999999999999888889999999999999999999888888899999999
Q ss_pred EEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeecccc
Q 045649 184 LALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSL 263 (725)
Q Consensus 184 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 263 (725)
|++++|.+++..+..|.++++|++|++++|.+.+..|..++.+++|++|++++|.+++. .+..+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 99999999866666678899999999999999888888888899999999999988865 356678888888888877
Q ss_pred cccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCcccc
Q 045649 264 SGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASI 343 (725)
Q Consensus 264 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 343 (725)
++ +...++|+.|++++|.++.. +..+ .++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence 63 33456788888888877643 2222 25677777777777653 556666777777777777766666666
Q ss_pred CCCcccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcE
Q 045649 344 GNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLER 423 (725)
Q Consensus 344 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 423 (725)
..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+.. +..+++|+.
T Consensus 275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~ 349 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKN 349 (597)
T ss_dssp TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCE
Confidence 666666666666666664 3444455566666666666665 34444555555555555555554321 333444444
Q ss_pred EEccCCcCc
Q 045649 424 VRFNQNNLS 432 (725)
Q Consensus 424 L~l~~n~l~ 432 (725)
|++++|.+.
T Consensus 350 L~l~~N~~~ 358 (597)
T 3oja_B 350 LTLSHNDWD 358 (597)
T ss_dssp EECCSSCEE
T ss_pred EEeeCCCCC
Confidence 444444443
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.8e-34 Score=307.63 Aligned_cols=333 Identities=21% Similarity=0.208 Sum_probs=221.5
Q ss_pred CCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEe
Q 045649 298 LSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELD 377 (725)
Q Consensus 298 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 377 (725)
+++++.+++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666666666666554444456666666666666666655555566666666666666666655555555566666666
Q ss_pred cccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCcccc
Q 045649 378 LCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYG 457 (725)
Q Consensus 378 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~ 457 (725)
+++|.++...+..+..+++|+.|++++|.+.+..+..+..++ +|++|++++|++++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------------------------~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT------------------------SLQNLQLSSNRLTH 179 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT------------------------TCCEEECCSSCCSB
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCC------------------------CCCEEECCCCcCCc
Confidence 666655533333344555555555555555444444444444 45555555444443
Q ss_pred ccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCC
Q 045649 458 EISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGS 537 (725)
Q Consensus 458 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 537 (725)
. .+..+++|+.+++++|.+++. ...++|++|++++|.+... |.. ..++|+.|++++|.+++. ..+..
T Consensus 180 ~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~ 246 (390)
T 3o6n_A 180 V---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLN 246 (390)
T ss_dssp C---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGG
T ss_pred c---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcC
Confidence 2 133445555555555554431 2334678888888887644 322 246889999999988754 56788
Q ss_pred CCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEe
Q 045649 538 LTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLN 617 (725)
Q Consensus 538 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 617 (725)
+++|++|++++|.+++..|..+..+++|++|++++|++++ +|..+..+++|++|++++|++++ +|..+..+++|++|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLY 324 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEE
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEE
Confidence 8999999999999999888899999999999999999975 56667888999999999999974 566688899999999
Q ss_pred CCCCcccccCCccccCCCCCCeeeCcCCcccccCCCC--CCcCceecccCCCCCCCC
Q 045649 618 LCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS--TVFKDAHVEGNKGLCGNV 672 (725)
Q Consensus 618 L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~~~~~gn~~lc~~~ 672 (725)
+++|+++.. | +..+++|++|++++|++.+..... ..+....+.+++..|..+
T Consensus 325 L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 325 LDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp CCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCSCCCTT
T ss_pred CCCCcccee-C--chhhccCCEEEcCCCCccchhHHHHHHHHHhhcccccCceeccc
Confidence 999999865 3 677889999999999998754321 112222566777777643
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.3e-34 Score=325.22 Aligned_cols=332 Identities=21% Similarity=0.229 Sum_probs=224.7
Q ss_pred CCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEe
Q 045649 298 LSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELD 377 (725)
Q Consensus 298 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 377 (725)
+++++.+++++|.++...+..+..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..|..++.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 35566666666666554444455566666666666666655555555666666666666666555555555555555555
Q ss_pred cccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCcccc
Q 045649 378 LCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYG 457 (725)
Q Consensus 378 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~ 457 (725)
+++|.+++..+..|..+++|+.|++++|.+.+..|..+..++ +|++|++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------------------------~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT------------------------SLQNLQLSSNRLTH 185 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT------------------------TCCEEECTTSCCSB
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC------------------------cCcEEECcCCCCCC
Confidence 555555543333345555555555555555544444444444 45555555544443
Q ss_pred ccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCC
Q 045649 458 EISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGS 537 (725)
Q Consensus 458 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 537 (725)
. .+..+++|+.+++++|.+++ +...++|+.|++++|.+....+.. .++|+.|++++|.+++ +..+..
T Consensus 186 ~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~ 252 (597)
T 3oja_B 186 V---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLN 252 (597)
T ss_dssp C---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGG
T ss_pred c---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--Chhhcc
Confidence 2 13344555555555555543 223356788888888776443322 2578999999999886 367888
Q ss_pred CCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEe
Q 045649 538 LTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLN 617 (725)
Q Consensus 538 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 617 (725)
+++|++|++++|.+++..|..|..+++|++|+|++|.+++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 330 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence 9999999999999999889999999999999999999986 5777788999999999999997 4667788899999999
Q ss_pred CCCCcccccCCccccCCCCCCeeeCcCCcccccCCCCCCcCce---ecccCCCCCCCC
Q 045649 618 LCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTVFKDA---HVEGNKGLCGNV 672 (725)
Q Consensus 618 L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~---~~~gn~~lc~~~ 672 (725)
+++|.+++.. +..+++|++|++++|++.|..+.. .+..+ .+.+++..|+.+
T Consensus 331 L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 331 LDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHH-HHHHHhhhccccccccCCcc
Confidence 9999998653 677889999999999999865432 22222 677888889764
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=4.2e-35 Score=305.11 Aligned_cols=283 Identities=19% Similarity=0.275 Sum_probs=161.1
Q ss_pred cCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccceeeCC---------CCCEEEEEcCCC
Q 045649 22 SSDSTKEALALLKWKRSLQNQNSSLLTSWTLYPANATNVPSYSKAKLSPCAWVGISCNQ---------AERVISINLSSM 92 (725)
Q Consensus 22 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~w~gv~c~~---------~~~v~~l~l~~~ 92 (725)
+++..+|++||++||+++..++.+.+.+|........ ++|.|.|+.|+. ..+|+.|+++++
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~----------~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n 91 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNP----------QIETRTGRALKATADLLEDATQPGRVALELRSV 91 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCT----------TSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccc----------cccccCCcchhhhHHHHhcccccceeEEEccCC
Confidence 3456789999999999997777666777831111333 789999999952 356666666666
Q ss_pred CCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCC
Q 045649 93 GLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIP 172 (725)
Q Consensus 93 ~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 172 (725)
.+. .++ ..++.+++|++|+|++|.+. .+|..++++++|++|++++|.++ .+|..++++++|++|++++|++.+.+|
T Consensus 92 ~l~-~lp-~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p 167 (328)
T 4fcg_A 92 PLP-QFP-DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP 167 (328)
T ss_dssp CCS-SCC-SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCC
T ss_pred Cch-hcC-hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccC
Confidence 665 344 34555666666666666665 55666666666666666666665 556566666666666666665555555
Q ss_pred cccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCC
Q 045649 173 PEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSN 252 (725)
Q Consensus 173 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 252 (725)
..++.. ..+..+.++++|++|++++|.+. .+|..++++++|++|++++|.+++ +|..+..+++
T Consensus 168 ~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~ 230 (328)
T 4fcg_A 168 EPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK 230 (328)
T ss_dssp SCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTT
T ss_pred hhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCC
Confidence 554330 00001122455555555555543 444445555555555555555553 3334555555
Q ss_pred CceEEeecccccccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccC
Q 045649 253 LGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHI 332 (725)
Q Consensus 253 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 332 (725)
|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.+++..
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred ccC
Q 045649 333 NQL 335 (725)
Q Consensus 333 n~l 335 (725)
+.+
T Consensus 311 ~~~ 313 (328)
T 4fcg_A 311 HLQ 313 (328)
T ss_dssp GGS
T ss_pred HHH
Confidence 433
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.7e-35 Score=301.38 Aligned_cols=256 Identities=26% Similarity=0.434 Sum_probs=219.2
Q ss_pred CCCcEEEccCCcCcc--cccccccCCCCCCEEECcC-CccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcE
Q 045649 419 TSLERVRFNQNNLSG--KVYEAFGYHPNLTFLDFSQ-NNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQV 495 (725)
Q Consensus 419 ~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~ls~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 495 (725)
.++++|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 457777777777777 6777777788888888884 7788778888888888888888888888888888888888888
Q ss_pred EeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCC-CCcEEEccCCcccccchhhhhcccCCCeeeCcCCc
Q 045649 496 LDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLT-ELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQ 574 (725)
Q Consensus 496 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 574 (725)
|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |++|++++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 88888888888888888888899999999988888888888887 899999999999888888888887 9999999999
Q ss_pred CCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCCC
Q 045649 575 FSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS 654 (725)
Q Consensus 575 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 654 (725)
+++.+|..+..+++|++|++++|++++.+|. +..+++|++|++++|++++.+|..|..+++|++|++++|+++|.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9988899999999999999999999887776 788899999999999999999999999999999999999999999987
Q ss_pred CCcCce---ecccCCCCCCCCCCCCCC
Q 045649 655 TVFKDA---HVEGNKGLCGNVNGFPSC 678 (725)
Q Consensus 655 ~~~~~~---~~~gn~~lc~~~~~~~~c 678 (725)
..+..+ .+.||+.+||.|. +.|
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p~--~~C 312 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSPL--PAC 312 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTTS--SCC
T ss_pred ccccccChHHhcCCCCccCCCC--CCC
Confidence 655544 7889999999874 356
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.3e-33 Score=293.57 Aligned_cols=307 Identities=23% Similarity=0.367 Sum_probs=197.6
Q ss_pred ccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCccc
Q 045649 295 LGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIF 374 (725)
Q Consensus 295 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 374 (725)
+..+++|++|+++++.+... + .+..+++|++|++++|++++..+ +..+++|++|++++|.+++. ..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 34566777777777777643 2 36667777777777777764432 66677777777777766643 2466666666
Q ss_pred EEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCc
Q 045649 375 ELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNN 454 (725)
Q Consensus 375 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~ 454 (725)
+|++++|.+++.. . +..+++|+.+++++|.....++. +..+++|++|++++|.+.+..+
T Consensus 114 ~L~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~------------------ 172 (347)
T 4fmz_A 114 ELYLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP------------------ 172 (347)
T ss_dssp EEECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG------------------
T ss_pred EEECcCCcccCch-h-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh------------------
Confidence 7777666666332 2 55566666666666544333322 4445555555555554443322
Q ss_pred cccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcc
Q 045649 455 FYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLE 534 (725)
Q Consensus 455 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 534 (725)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+
T Consensus 173 --------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 173 --------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp --------GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred --------hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 4445555555555555543322 5566667777777776664433 6667777777777777764433
Q ss_pred cCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCC
Q 045649 535 LGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLE 614 (725)
Q Consensus 535 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 614 (725)
+..+++|++|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|++|++++|++++..|..++.+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 67777777777777777764 4577777888888888877654 3577778888888888888777777788888888
Q ss_pred EEeCCCCcccccCCccccCCCCCCeeeCcCCccc
Q 045649 615 KLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648 (725)
Q Consensus 615 ~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 648 (725)
+|++++|++++..| +..+++|++|++++|+++
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 88888888876655 677888888888888764
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.5e-33 Score=291.72 Aligned_cols=307 Identities=24% Similarity=0.382 Sum_probs=233.1
Q ss_pred ccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCcccc
Q 045649 271 IGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLR 350 (725)
Q Consensus 271 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 350 (725)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 4578899999999999974 44 48889999999999999986544 89999999999999999864 4689999999
Q ss_pred eeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCc
Q 045649 351 LLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNN 430 (725)
Q Consensus 351 ~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 430 (725)
+|++++|.+.+..+ +..+++|++|++++|.....++ .+..+++|+.+++++|.+.+..+ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 99999999986544 8889999999999997665544 48899999999999999876544 7888999999999888
Q ss_pred CcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeeccccc
Q 045649 431 LSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQ 510 (725)
Q Consensus 431 l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 510 (725)
+.+..+ +..+++|+.+++++|.+++..+ +. .+++|++|++++|++++..+
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~------------------------~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VA------------------------NMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GG------------------------GCTTCCEEECCSSCCCCCGG--
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hh------------------------cCCcCCEEEccCCccCCCcc--
Confidence 876543 6667777777777776654322 33 44455555555555543322
Q ss_pred ccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCC
Q 045649 511 LGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLS 590 (725)
Q Consensus 511 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 590 (725)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|++++..|..++.+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 55566666666666666542 3466677777777777777764 3567777888888888888777777788888888
Q ss_pred EEeCCCCCCCccCCccccCCCCCCEEeCCCCccc
Q 045649 591 ELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLS 624 (725)
Q Consensus 591 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 624 (725)
+|++++|++++..| +..+++|++|++++|.++
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 88888888877666 677788888888888765
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.4e-31 Score=278.14 Aligned_cols=288 Identities=22% Similarity=0.261 Sum_probs=198.8
Q ss_pred ccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEcc
Q 045649 348 SLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFN 427 (725)
Q Consensus 348 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 427 (725)
+++.++++++.++ .+|..+ .+.+++|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3444555555444 233322 1345555555555554444455555555555555555555555555555555555555
Q ss_pred CCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCcccc--CCCCcccCCCCCCcEEeCCCCeeee
Q 045649 428 QNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIY--GSIPTEIGDLSKLQVLDLSSNHIVG 505 (725)
Q Consensus 428 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~ 505 (725)
+|.++.... .+. ++|++|++++|++++..+..+..+++|+.|++++|.++ +..+..+..+ +|++|++++|++++
T Consensus 111 ~n~l~~l~~-~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEIPP-NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSCCS-SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCccCc-ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 555553222 221 56666666666666555555666677777777777664 3556666666 78888888888774
Q ss_pred cccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhc
Q 045649 506 EIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEK 585 (725)
Q Consensus 506 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 585 (725)
+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 454443 68889999999988877788888899999999999998877778888999999999999987 67888899
Q ss_pred CCCCCEEeCCCCCCCccCCccccCC------CCCCEEeCCCCccc--ccCCccccCCCCCCeeeCcCCc
Q 045649 586 LIHLSELDLSYNFLDEEMPFQICNM------KSLEKLNLCHNNLS--GFIPRCFEGMHNLSHIDISYNE 646 (725)
Q Consensus 586 l~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~ls~N~ 646 (725)
+++|++|++++|++++..+..+... .+|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 9999999999999988877776553 67899999999887 6678889999999999998874
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=5.7e-31 Score=275.25 Aligned_cols=295 Identities=23% Similarity=0.287 Sum_probs=145.4
Q ss_pred CCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEcc
Q 045649 108 HLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALC 187 (725)
Q Consensus 108 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls 187 (725)
+++.++++++.+. .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4556666655553 3444332 455555555555554444555555555555555555555445555555555555555
Q ss_pred ccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccC
Q 045649 188 HNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHI 267 (725)
Q Consensus 188 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 267 (725)
+|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++. .+..
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~ 165 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN----------------------SGFE 165 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG----------------------GGSC
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc----------------------CCCC
Confidence 55554 2333222 344444444444443333334444444444444444431 1133
Q ss_pred CccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCc
Q 045649 268 PSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLS 347 (725)
Q Consensus 268 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 347 (725)
|..+..+ +|++|++++|++++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..++
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 241 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT
T ss_pred cccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC
Confidence 3344444 45555555555442 333322 4555555555555555545555555666666666666555555555556
Q ss_pred ccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEcc
Q 045649 348 SLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFN 427 (725)
Q Consensus 348 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 427 (725)
+|+.|++++|+++ .+|..+..+++|++|++++|++++..+..+..... -....+|+.+++.
T Consensus 242 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~------------------~~~~~~l~~L~l~ 302 (332)
T 2ft3_A 242 TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF------------------GVKRAYYNGISLF 302 (332)
T ss_dssp TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC------------------CSSSCCBSEEECC
T ss_pred CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccc------------------ccccccccceEee
Confidence 6666666666555 44555555666666666666665444433332100 0012344555555
Q ss_pred CCcCc--ccccccccCCCCCCEEECcCC
Q 045649 428 QNNLS--GKVYEAFGYHPNLTFLDFSQN 453 (725)
Q Consensus 428 ~n~l~--~~~~~~~~~~~~L~~L~ls~n 453 (725)
+|.+. +..+..|..+++|+.+++++|
T Consensus 303 ~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 303 NNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cCcccccccCcccccccchhhhhhcccc
Confidence 55544 344445555555555555554
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=6.4e-31 Score=274.71 Aligned_cols=289 Identities=21% Similarity=0.273 Sum_probs=176.5
Q ss_pred CCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCC
Q 045649 324 SLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNIC 403 (725)
Q Consensus 324 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~ 403 (725)
+++.++++++.++ .+|..+. ++++.|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4555666655555 2333332 355555555555555444455555555555555555555445555555555555555
Q ss_pred CCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCcccc--C
Q 045649 404 ENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIY--G 481 (725)
Q Consensus 404 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~--~ 481 (725)
+|.+.. +|..+. ++|++|++++|.+++..+.. +.++++|+.|++++|.+. +
T Consensus 109 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~------------------------~~~l~~L~~L~l~~n~l~~~~ 161 (330)
T 1xku_A 109 KNQLKE-LPEKMP--KTLQELRVHENEITKVRKSV------------------------FNGLNQMIVVELGTNPLKSSG 161 (330)
T ss_dssp SSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHH------------------------HTTCTTCCEEECCSSCCCGGG
T ss_pred CCcCCc-cChhhc--ccccEEECCCCcccccCHhH------------------------hcCCccccEEECCCCcCCccC
Confidence 555442 222221 34444444444444444444 444444444444444443 2
Q ss_pred CCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhc
Q 045649 482 SIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIAN 561 (725)
Q Consensus 482 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 561 (725)
..+..+..+++|++|++++|.++. +|..+. ++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred cChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 344455566666666666666653 333332 56777777777777666777777777888888888877766667777
Q ss_pred ccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccC------CCCCCEEeCCCCcccc--cCCccccC
Q 045649 562 LLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICN------MKSLEKLNLCHNNLSG--FIPRCFEG 633 (725)
Q Consensus 562 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~L~~N~l~~--~~p~~l~~ 633 (725)
+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .++|+.|++++|++.. ..|..|..
T Consensus 239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence 888888888888876 66777788888888888888887776666643 3678888888888763 45677888
Q ss_pred CCCCCeeeCcCCc
Q 045649 634 MHNLSHIDISYNE 646 (725)
Q Consensus 634 l~~L~~L~ls~N~ 646 (725)
+.+++.+++++|+
T Consensus 318 ~~~l~~l~L~~N~ 330 (330)
T 1xku_A 318 VYVRAAVQLGNYK 330 (330)
T ss_dssp CCCGGGEEC----
T ss_pred ccceeEEEecccC
Confidence 8888888888874
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1e-30 Score=273.13 Aligned_cols=224 Identities=25% Similarity=0.307 Sum_probs=131.0
Q ss_pred CCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEc
Q 045649 107 PHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELAL 186 (725)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 186 (725)
+++++|++++|.+.+..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.++ .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 56777777777776666666777777777777777777666777777777777777777766 4454443 56666666
Q ss_pred cccccCCCCccccCCCCCCCEEEecCCCCCc--cCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeeccccc
Q 045649 187 CHNNLHGPIPPSLGNLSNLANFYLNNNSLFD--SIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLS 264 (725)
Q Consensus 187 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 264 (725)
++|.+++..+..+.++++|++|++++|.+.. ..+..+.++++|++|++++|.++. +|..+. ++|++|++++|.++
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCC
Confidence 6666665555556666666666666666532 444555566666666666666553 333322 45555555555555
Q ss_pred ccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCC
Q 045649 265 GHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNG 337 (725)
Q Consensus 265 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 337 (725)
+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 444555555555555555555555444444444555555555555444 334444444444444444444443
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=3.8e-35 Score=322.05 Aligned_cols=378 Identities=18% Similarity=0.107 Sum_probs=215.0
Q ss_pred CCCceEEeecccccccCCc-cccCCCCCCEEECcCccCCc----cCCccccCCCCCCEEEccCCcCCCCCCccc-ccCC-
Q 045649 251 SNLGILYLYSNSLSGHIPS-VIGNLKSLLQLDLSENQLSG----SIPLSLGNLSSLTVMSLFSNSLSGFIPPIL-GNLK- 323 (725)
Q Consensus 251 ~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~- 323 (725)
++|++|++++|.++..... .+..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4678888888887644333 26677888888888888764 245566777888888888887765433222 2233
Q ss_pred ---CCCcccccCccCCC----cCccccCCCcccceeecccCccccccchhhcc-----CCcccEEecccCccCccCCccC
Q 045649 324 ---SLSALGLHINQLNG----VIPASIGNLSSLRLLYLYNNGLYGFVPEEIGY-----LKSIFELDLCTNRLSGAIPHSI 391 (725)
Q Consensus 324 ---~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~ls~n~l~~~~~~~~ 391 (725)
+|++|++++|+++. .++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-- 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE-- 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--
Confidence 57777777777663 34556666667777777777665443333221 33466666666655532211
Q ss_pred cCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCccccccccc-----CCCCCCEEECcCCccccc----cCcc
Q 045649 392 SNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFG-----YHPNLTFLDFSQNNFYGE----ISFN 462 (725)
Q Consensus 392 ~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~ls~n~l~~~----~~~~ 462 (725)
.++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..
T Consensus 161 ------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 161 ------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp ------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred ------------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 1123333444455555555544433332221 234555555555555442 2333
Q ss_pred ccCCCCCcEEeCCCccccCCC-----CcccCCCCCCcEEeCCCCeeeec----ccccccCCCCCCeeeCCCCcCCCCCCc
Q 045649 463 WRNFPKLCTFNASMNNIYGSI-----PTEIGDLSKLQVLDLSSNHIVGE----IPVQLGKLFSLTKLILNSNQLSGGIPL 533 (725)
Q Consensus 463 ~~~~~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 533 (725)
+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 444555555555555544321 12223456666666666666543 445555566677777776666433222
Q ss_pred ccC-----CCCCCcEEEccCCccccc----chhhhhcccCCCeeeCcCCcCCcCCchhhhc-----CCCCCEEeCCCCCC
Q 045649 534 ELG-----SLTELQYIDLSANKLRSW----IPKSIANLLKLYYLNLSNNQFSQKIPIEVEK-----LIHLSELDLSYNFL 599 (725)
Q Consensus 534 ~l~-----~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~l 599 (725)
.+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|++
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 221 225677777777776654 3455566677777777777776554444432 55777777777777
Q ss_pred Cc----cCCccccCCCCCCEEeCCCCcccccCCcccc-----CCCCCCeeeCcCCccc
Q 045649 600 DE----EMPFQICNMKSLEKLNLCHNNLSGFIPRCFE-----GMHNLSHIDISYNELQ 648 (725)
Q Consensus 600 ~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~ls~N~l~ 648 (725)
++ .+|..+..+++|++|++++|++++.....+. ....|+.|++.++.+.
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 65 5666666777777777777777644211111 1234666666655543
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.8e-35 Score=319.58 Aligned_cols=385 Identities=19% Similarity=0.134 Sum_probs=263.1
Q ss_pred CCCCEEEcccCcCcccCCcC-ccCCCCCceEEeecccccc----cCCccccCCCCCCEEECcCccCCccCCccc-cCCC-
Q 045649 227 KSLSTLDLSKNQLSGLIPFS-LGNLSNLGILYLYSNSLSG----HIPSVIGNLKSLLQLDLSENQLSGSIPLSL-GNLS- 299 (725)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~- 299 (725)
++|++|++++|+++...... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 57899999999998654333 6789999999999999884 456778889999999999999976544333 2344
Q ss_pred ---CCCEEEccCCcCCC----CCCcccccCCCCCcccccCccCCCcCcccc-----CCCcccceeecccCcccccc----
Q 045649 300 ---SLTVMSLFSNSLSG----FIPPILGNLKSLSALGLHINQLNGVIPASI-----GNLSSLRLLYLYNNGLYGFV---- 363 (725)
Q Consensus 300 ---~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~---- 363 (725)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999984 457888999999999999999876544333 23568999999999998743
Q ss_pred chhhccCCcccEEecccCccCccCCccCc-----CCCCCcEEeCCCCcccCc----CCccccCCCCCcEEEccCCcCccc
Q 045649 364 PEEIGYLKSIFELDLCTNRLSGAIPHSIS-----NLTELVLVNICENHFFGP----IPKSLRNLTSLERVRFNQNNLSGK 434 (725)
Q Consensus 364 ~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~ 434 (725)
+..+..+++|++|++++|.+++..+..+. ..++|+.|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 55666788999999999988754333332 244666666666665542 344444555555555555555433
Q ss_pred ccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCC----CCcccCCCCCCcEEeCCCCeeeeccccc
Q 045649 435 VYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGS----IPTEIGDLSKLQVLDLSSNHIVGEIPVQ 510 (725)
Q Consensus 435 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 510 (725)
....+. +..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..
T Consensus 243 ~~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 243 GMAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred HHHHHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 211110 11112344555555555544432 3444555667777777777665443333
Q ss_pred ccC-----CCCCCeeeCCCCcCCCC----CCcccCCCCCCcEEEccCCcccccchhhhhc-----ccCCCeeeCcCCcCC
Q 045649 511 LGK-----LFSLTKLILNSNQLSGG----IPLELGSLTELQYIDLSANKLRSWIPKSIAN-----LLKLYYLNLSNNQFS 576 (725)
Q Consensus 511 ~~~-----l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~ 576 (725)
+.. .++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|+++
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 322 25788888888877654 3455667788888888888887765555543 568889999999887
Q ss_pred c----CCchhhhcCCCCCEEeCCCCCCCccCCcccc-----CCCCCCEEeCCCCcccccCCcc
Q 045649 577 Q----KIPIEVEKLIHLSELDLSYNFLDEEMPFQIC-----NMKSLEKLNLCHNNLSGFIPRC 630 (725)
Q Consensus 577 ~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~L~~N~l~~~~p~~ 630 (725)
+ .+|..+..+++|++|++++|++++.....+. ....|+.|++.++......++.
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~ 446 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 446 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence 6 6778888888999999999988764222221 2456888888888776554443
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=2.8e-32 Score=309.15 Aligned_cols=347 Identities=11% Similarity=0.009 Sum_probs=222.6
Q ss_pred CCCCCCEEEccCCcCCCC----CCcccccCCCCCcccccCccCCC----cCccccCCCcccceeecccCccccccchhhc
Q 045649 297 NLSSLTVMSLFSNSLSGF----IPPILGNLKSLSALGLHINQLNG----VIPASIGNLSSLRLLYLYNNGLYGFVPEEIG 368 (725)
Q Consensus 297 ~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 368 (725)
.+++|++|++++|.+++. ++..+..+++|++|++++|.+++ .++..+..+++|+.|++++|.+.+ ++..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 345555555555544433 22223445566666666666552 233344556677777777776665 456666
Q ss_pred cCCcccEEecccCccC---ccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCccccc-ccccCCCC
Q 045649 369 YLKSIFELDLCTNRLS---GAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVY-EAFGYHPN 444 (725)
Q Consensus 369 ~l~~L~~L~ls~n~l~---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~ 444 (725)
.+++|++|+++..... +..+..+..+++|+.++++++. .+.+|..+..+++|++|++++|.+++... ..+..+++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 7777777777653322 2334456677778888777643 34566677778888888888888765544 34567888
Q ss_pred CCEEECcCCccccccCccccCCCCCcEEeCCC-----------ccccCC-CCcccCCCCCCcEEeCCCCeeeeccccccc
Q 045649 445 LTFLDFSQNNFYGEISFNWRNFPKLCTFNASM-----------NNIYGS-IPTEIGDLSKLQVLDLSSNHIVGEIPVQLG 512 (725)
Q Consensus 445 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~-----------n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 512 (725)
|++|+++++...+.++.....+++|++|++++ +.+++. ++.....+++|++|+++.|.+++..+..+.
T Consensus 320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 88888883322223333445678888888883 444433 222234578888888888888777666666
Q ss_pred C-CCCCCeeeCC----CCcCCCC-----CCcccCCCCCCcEEEccCCc--ccccchhhhhc-ccCCCeeeCcCCcCCc-C
Q 045649 513 K-LFSLTKLILN----SNQLSGG-----IPLELGSLTELQYIDLSANK--LRSWIPKSIAN-LLKLYYLNLSNNQFSQ-K 578 (725)
Q Consensus 513 ~-l~~L~~L~Ls----~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~-l~~L~~L~Ls~n~l~~-~ 578 (725)
. +++|+.|+++ .|.+++. ++..+..+++|++|++++|. +++..+..+.. +++|++|++++|++++ .
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 479 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG 479 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH
Confidence 5 8888888886 5666643 22335668888888887543 66555555543 7888999999888876 3
Q ss_pred CchhhhcCCCCCEEeCCCCCCCcc-CCccccCCCCCCEEeCCCCcccccCCccc-cCCCCCCeeeCcCC
Q 045649 579 IPIEVEKLIHLSELDLSYNFLDEE-MPFQICNMKSLEKLNLCHNNLSGFIPRCF-EGMHNLSHIDISYN 645 (725)
Q Consensus 579 ~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~ls~N 645 (725)
++..+..+++|++|+|++|++++. ++.....+++|++|++++|+++......+ ..++.+....+..+
T Consensus 480 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 455567888899999998888654 34445678888899999888876533333 34566655545443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=5.1e-30 Score=270.51 Aligned_cols=280 Identities=21% Similarity=0.190 Sum_probs=204.3
Q ss_pred CCCcccceeeCCCCCEEEEEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCC
Q 045649 69 SPCAWVGISCNQAERVISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIP 148 (725)
Q Consensus 69 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 148 (725)
.+|.|.|+ |+ +++++++. +|. . -.++|++|++++|.+.+..+..+.++++|++|++++|++++..|
T Consensus 28 ~~C~~~~~-c~---------~~~~~l~~-iP~-~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (353)
T 2z80_A 28 LSCDRNGI-CK---------GSSGSLNS-IPS-G--LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93 (353)
T ss_dssp CEECTTSE-EE---------CCSTTCSS-CCT-T--CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred CCCCCCeE-ee---------CCCCCccc-ccc-c--ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCH
Confidence 56899887 64 23444442 331 2 23589999999999987766689999999999999999998888
Q ss_pred ccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCc-cccCCCCCCCEEEecCCC-CCccCccccCCC
Q 045649 149 QEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIP-PSLGNLSNLANFYLNNNS-LFDSIPLVLGNL 226 (725)
Q Consensus 149 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l 226 (725)
..|+++++|++|++++|.+++..+..++++++|++|++++|.+++..+ ..+..+++|++|++++|. +.+..+..+.++
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 173 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence 889999999999999999986555558899999999999999885433 478889999999999884 666666788888
Q ss_pred CCCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCccCCccCCcccc---CCCCCCE
Q 045649 227 KSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLG---NLSSLTV 303 (725)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~ 303 (725)
++|++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+. ..+.++.
T Consensus 174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~ 253 (353)
T 2z80_A 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK 253 (353)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCE
T ss_pred CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhc
Confidence 9999999999999888888888889999999999888644333455688888999988888765444332 3455666
Q ss_pred EEccCCcCCC----CCCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccc
Q 045649 304 MSLFSNSLSG----FIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGF 362 (725)
Q Consensus 304 L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 362 (725)
+++.++.+++ .+|..+..+++|++|++++|+++...+..+..+++|++|++++|.+.+.
T Consensus 254 l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp EEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 6666666554 2444555566666666666666532222245556666666666655544
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.4e-29 Score=259.89 Aligned_cols=251 Identities=24% Similarity=0.261 Sum_probs=178.2
Q ss_pred CcccceeeCCCCCEEEEEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCc--cCC
Q 045649 71 CAWVGISCNQAERVISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTG--VIP 148 (725)
Q Consensus 71 c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p 148 (725)
|.|.++.|+.. +++ .+|. .-.++|++|++++|.+....+..|.++++|++|++++|.++. ..|
T Consensus 7 C~~~~l~c~~~-----------~l~-~ip~---~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 71 (306)
T 2z66_A 7 CSGTEIRCNSK-----------GLT-SVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71 (306)
T ss_dssp EETTEEECCSS-----------CCS-SCCS---CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEE
T ss_pred eCCCEEEcCCC-----------Ccc-cCCC---CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcc
Confidence 89999999642 222 1221 223678889998888875444457888888888888888873 235
Q ss_pred ccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCc-cccCCCCCCCEEEecCCCCCccCccccCCCC
Q 045649 149 QEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIP-PSLGNLSNLANFYLNNNSLFDSIPLVLGNLK 227 (725)
Q Consensus 149 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 227 (725)
..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..++
T Consensus 72 ~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 150 (306)
T 2z66_A 72 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150 (306)
T ss_dssp HHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred cccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence 66677888888888888877 466667788888888888888776544 5677777788888877777777777777777
Q ss_pred CCCEEEcccCcCcc-cCCcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEc
Q 045649 228 SLSTLDLSKNQLSG-LIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSL 306 (725)
Q Consensus 228 ~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 306 (725)
+|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 77777777777765 45666777777777777777777666666777777777777777776655556666667777777
Q ss_pred cCCcCCCCCCcccccCC-CCCcccccCccCCC
Q 045649 307 FSNSLSGFIPPILGNLK-SLSALGLHINQLNG 337 (725)
Q Consensus 307 ~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~ 337 (725)
++|.+++..|..+..++ +|+.|++++|.+++
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 77776666666666653 66666666666654
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.5e-29 Score=257.80 Aligned_cols=251 Identities=19% Similarity=0.258 Sum_probs=163.6
Q ss_pred EEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCccc--ccccccCCCCCCEEECcC
Q 045649 375 ELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGK--VYEAFGYHPNLTFLDFSQ 452 (725)
Q Consensus 375 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~ls~ 452 (725)
.++.+++.++ .+|..+. ++++.|++++|.+....+..+.++++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4555555554 3343322 3455555555555433333345555555555555555422 233344455555555555
Q ss_pred CccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeeccc-ccccCCCCCCeeeCCCCcCCCCC
Q 045649 453 NNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIP-VQLGKLFSLTKLILNSNQLSGGI 531 (725)
Q Consensus 453 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~ 531 (725)
|.+++ +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..
T Consensus 88 n~i~~-------------------------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 88 NGVIT-------------------------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp CSEEE-------------------------EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred Ccccc-------------------------ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 54442 33345555666666666666654433 45666666777777777666666
Q ss_pred CcccCCCCCCcEEEccCCcccc-cchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCC
Q 045649 532 PLELGSLTELQYIDLSANKLRS-WIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNM 610 (725)
Q Consensus 532 ~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 610 (725)
+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 6667777777777777777765 466777777788888888888877777778888888888888888887777778888
Q ss_pred CCCCEEeCCCCcccccCCccccCCC-CCCeeeCcCCcccccCCC
Q 045649 611 KSLEKLNLCHNNLSGFIPRCFEGMH-NLSHIDISYNELQGPIPN 653 (725)
Q Consensus 611 ~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~ip~ 653 (725)
++|++|++++|++++..|..+..++ +|++|++++|+++|.++.
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 8888888888888888888888874 788888888888876653
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-29 Score=267.20 Aligned_cols=277 Identities=15% Similarity=0.154 Sum_probs=198.7
Q ss_pred EEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCc
Q 045649 375 ELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNN 454 (725)
Q Consensus 375 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~ 454 (725)
..+.+++.++ .+|..+. ++|+.|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3455555554 3343332 355556666665555444456666666666666666666555666666666666666666
Q ss_pred cccccCccccCCCCCcEEeCCCccccCCCC-cccCCCCCCcEEeCCCC-eeeecccccccCCCCCCeeeCCCCcCCCCCC
Q 045649 455 FYGEISFNWRNFPKLCTFNASMNNIYGSIP-TEIGDLSKLQVLDLSSN-HIVGEIPVQLGKLFSLTKLILNSNQLSGGIP 532 (725)
Q Consensus 455 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 532 (725)
+++..+..+.++++|++|++++|.+++..+ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|++.+..|
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 665444446666677777777776664333 36777888888888887 4666666778888888888888888887778
Q ss_pred cccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhh---cCCCCCEEeCCCCCCCc----cCCc
Q 045649 533 LELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVE---KLIHLSELDLSYNFLDE----EMPF 605 (725)
Q Consensus 533 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~----~~p~ 605 (725)
..+..+++|++|++++|.+....+..+..+++|++|++++|++++..+..+. ....++.++++++.+++ .+|.
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence 8888888999999999988775545556688999999999998876555443 46778899999998876 4677
Q ss_pred cccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCCC
Q 045649 606 QICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS 654 (725)
Q Consensus 606 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 654 (725)
.+..+++|++|++++|+++...+..|..+++|++|++++|++.|.+|..
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence 8899999999999999999544444689999999999999999988743
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3e-32 Score=308.98 Aligned_cols=424 Identities=15% Similarity=0.041 Sum_probs=221.8
Q ss_pred CcccCCCCCCCEEEcccccc---CCCCccccC------------CCCCCCEEEecCCCCCccCccccCC-CCC-CCEEEc
Q 045649 172 PPEIGQLNLINELALCHNNL---HGPIPPSLG------------NLSNLANFYLNNNSLFDSIPLVLGN-LKS-LSTLDL 234 (725)
Q Consensus 172 p~~~~~l~~L~~L~Ls~n~l---~~~~~~~l~------------~l~~L~~L~L~~n~l~~~~p~~l~~-l~~-L~~L~L 234 (725)
+..+..+++|++|+++++.. .+.+|..++ .+++|++|+|++|.+.+..+..+.. +++ |++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 33456677788888876532 122332222 4556666666666555444444433 223 666666
Q ss_pred ccCc-Ccc-cCCcCccCCCCCceEEeeccccccc----CCccccCCCCCCEEECcCccCC----ccCCccccCCCCCCEE
Q 045649 235 SKNQ-LSG-LIPFSLGNLSNLGILYLYSNSLSGH----IPSVIGNLKSLLQLDLSENQLS----GSIPLSLGNLSSLTVM 304 (725)
Q Consensus 235 s~n~-l~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L 304 (725)
++|. ++. .++.....+++|++|++++|.+++. ++..+..+++|++|++++|.++ +.++..+..+++|++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 5554 110 0111122455566666665555433 2222344555555555555554 1222233445555555
Q ss_pred EccCCcCCCCCCcccccCCCCCcccccCccCC---CcCccccCCCcccceeecccCccccccchhhccCCcccEEecccC
Q 045649 305 SLFSNSLSGFIPPILGNLKSLSALGLHINQLN---GVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTN 381 (725)
Q Consensus 305 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n 381 (725)
++++|.+.+ ++..+..+++|++|+++..... +..+..+..+++|+.|+++++. .+.+|..+..+++|++|++++|
T Consensus 226 ~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 226 KVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp ECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTC
T ss_pred eccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCC
Confidence 555555543 3344555555555555432211 1122333444445555444432 1223333444444444444444
Q ss_pred ccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCccc-ccccccCCCCCCEEECcC--------
Q 045649 382 RLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGK-VYEAFGYHPNLTFLDFSQ-------- 452 (725)
Q Consensus 382 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~ls~-------- 452 (725)
.+++... +..+..+++|++|++. +.+.+. .+.....+++|++|++++
T Consensus 304 ~l~~~~~-----------------------~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~ 359 (592)
T 3ogk_B 304 LLETEDH-----------------------CTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGME 359 (592)
T ss_dssp CCCHHHH-----------------------HHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTS
T ss_pred cCCHHHH-----------------------HHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccc
Confidence 4332211 1223455555555555 222222 222234455666666662
Q ss_pred ---Ccccccc-CccccCCCCCcEEeCCCccccCCCCcccCC-CCCCcEEeCC----CCeeeec-----ccccccCCCCCC
Q 045649 453 ---NNFYGEI-SFNWRNFPKLCTFNASMNNIYGSIPTEIGD-LSKLQVLDLS----SNHIVGE-----IPVQLGKLFSLT 518 (725)
Q Consensus 453 ---n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~L~ 518 (725)
+.+++.. ......+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|+
T Consensus 360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439 (592)
T ss_dssp STTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred cccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence 3333321 111234666666666666665554444443 6667777774 4555542 334456677888
Q ss_pred eeeCCCCc--CCCCCCccc-CCCCCCcEEEccCCccccc-chhhhhcccCCCeeeCcCCcCCcC-CchhhhcCCCCCEEe
Q 045649 519 KLILNSNQ--LSGGIPLEL-GSLTELQYIDLSANKLRSW-IPKSIANLLKLYYLNLSNNQFSQK-IPIEVEKLIHLSELD 593 (725)
Q Consensus 519 ~L~Ls~n~--l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~ 593 (725)
+|++++|. +++..+..+ ..+++|++|++++|.+++. ++..+.++++|++|+|++|.+++. ++..+..+++|++|+
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE
Confidence 88887543 443333333 2377888888888888763 345557788888888888887654 344456788899999
Q ss_pred CCCCCCCccCCccc-cCCCCCCEEeCCCC
Q 045649 594 LSYNFLDEEMPFQI-CNMKSLEKLNLCHN 621 (725)
Q Consensus 594 Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N 621 (725)
|++|++++.....+ ..++.+....+..+
T Consensus 520 ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 520 VQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 99998876644333 35676666665554
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.2e-28 Score=256.47 Aligned_cols=236 Identities=24% Similarity=0.258 Sum_probs=197.6
Q ss_pred CCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEE
Q 045649 105 SFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINEL 184 (725)
Q Consensus 105 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 184 (725)
..+++++|+|++|.+. .+|..++++++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..++++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4567788888887776 66777777778888888777777 67777777777777777777776 667777777777777
Q ss_pred EccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeeccccc
Q 045649 185 ALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLS 264 (725)
Q Consensus 185 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 264 (725)
++++|++.+.+|..+... ..+..+.++++|++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 156 ~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 777776666666544321 11223556999999999999999 78889999999999999999999
Q ss_pred ccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccC
Q 045649 265 GHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIG 344 (725)
Q Consensus 265 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 344 (725)
.+|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.
T Consensus 220 -~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 -ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp -CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred -cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 4777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccceeecccCccc
Q 045649 345 NLSSLRLLYLYNNGLY 360 (725)
Q Consensus 345 ~l~~L~~L~L~~n~l~ 360 (725)
++++|+.+++..+.+.
T Consensus 299 ~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 299 QLPANCIILVPPHLQA 314 (328)
T ss_dssp GSCTTCEEECCGGGSC
T ss_pred hccCceEEeCCHHHHH
Confidence 9999999999987554
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.9e-27 Score=259.53 Aligned_cols=231 Identities=22% Similarity=0.203 Sum_probs=162.0
Q ss_pred CCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCC
Q 045649 420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLS 499 (725)
Q Consensus 420 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 499 (725)
++++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 45555555555555555555555666666666666655555556666666666666666665555556667777777777
Q ss_pred CCeeeecccccccCCCCCCeeeCCCCcCCCCC-CcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcC
Q 045649 500 SNHIVGEIPVQLGKLFSLTKLILNSNQLSGGI-PLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQK 578 (725)
Q Consensus 500 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 578 (725)
+|++++..+..|..+++|++|++++|+..+.+ +..+..+++|++|++++|.+++. | .+..+++|++|+|++|++++.
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEE
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCccc
Confidence 77776555566677777777777774333333 33567777777777777777764 3 467777888888888888877
Q ss_pred CchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCC
Q 045649 579 IPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIP 652 (725)
Q Consensus 579 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 652 (725)
.|..|.++++|+.|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|++.+.+.
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 78888888888888888888888878788888888888888888887777777888888888888888877664
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.1e-27 Score=244.55 Aligned_cols=254 Identities=21% Similarity=0.187 Sum_probs=182.2
Q ss_pred EEEEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccC
Q 045649 85 ISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDV 164 (725)
Q Consensus 85 ~~l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~ 164 (725)
+.++.++.+++. +| ....++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~-ip---~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VP---VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS-CC---TTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCccc-CC---cCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 455556655553 22 12356888888888888877777788888888888888888877788888888888888888
Q ss_pred Cc-CCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccC
Q 045649 165 NQ-LHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLI 243 (725)
Q Consensus 165 n~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 243 (725)
|. +....|..+.++++|++|++++|.+++..|..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 86 66555777888888888888888888777777888888888888888887666666777888888888888887666
Q ss_pred CcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCC
Q 045649 244 PFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLK 323 (725)
Q Consensus 244 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 323 (725)
+..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+....+.. .-..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~ 248 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA 248 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence 666777778888888888777777777777777777777777777655555777777777777777765432211 0112
Q ss_pred CCCcccccCccCCCcCcccc
Q 045649 324 SLSALGLHINQLNGVIPASI 343 (725)
Q Consensus 324 ~L~~L~L~~n~l~~~~~~~l 343 (725)
.++.+....+.+.+..|..+
T Consensus 249 ~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp HHHHCCSEECCCBEEESGGG
T ss_pred HHHhcccccCccccCCchHh
Confidence 23333344455544444443
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=6.4e-28 Score=246.35 Aligned_cols=212 Identities=22% Similarity=0.173 Sum_probs=151.7
Q ss_pred CCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCe-eeecccccccCCCCCCeee
Q 045649 443 PNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNH-IVGEIPVQLGKLFSLTKLI 521 (725)
Q Consensus 443 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 521 (725)
+++++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|+ +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 456666666666665555556666666666666666666556666666777777777775 5555566667777777777
Q ss_pred CCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCc
Q 045649 522 LNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDE 601 (725)
Q Consensus 522 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 601 (725)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 77777776666667777777777777777777666667777777777777777776666667777788888888888877
Q ss_pred cCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCCC
Q 045649 602 EMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS 654 (725)
Q Consensus 602 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 654 (725)
..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+.++..
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence 77777777888888888888887766667777888888888888887766543
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.8e-27 Score=256.19 Aligned_cols=231 Identities=24% Similarity=0.250 Sum_probs=156.9
Q ss_pred CCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCC
Q 045649 420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLS 499 (725)
Q Consensus 420 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 499 (725)
+++.|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 44555555555555555555555555555555555555555555555566666666665555555556666666666666
Q ss_pred CCeeeecccccccCCCCCCeeeCCCCcCCCC-CCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcC
Q 045649 500 SNHIVGEIPVQLGKLFSLTKLILNSNQLSGG-IPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQK 578 (725)
Q Consensus 500 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 578 (725)
+|++++..+..|..+++|++|++++|+..+. .+..|..+++|++|++++|.++.. | .+..+++|++|+|++|++++.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCcc
Confidence 6666655555666677777777776433333 333566777777777777777653 3 467777788888888888777
Q ss_pred CchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCC
Q 045649 579 IPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIP 652 (725)
Q Consensus 579 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 652 (725)
.|..|.++++|+.|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|++.+.+.
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 77788888888888888888888777778888888888888888887777777888888888888888877654
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.1e-26 Score=253.37 Aligned_cols=245 Identities=23% Similarity=0.217 Sum_probs=166.8
Q ss_pred EEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCc
Q 045649 375 ELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNN 454 (725)
Q Consensus 375 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~ 454 (725)
.++.++..++ .+|..+. ++++.|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++|+
T Consensus 58 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 3444444444 3333322 345555555555555555555555666666666666655555566666666666666666
Q ss_pred cccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCe-eeecccccccCCCCCCeeeCCCCcCCCCCCc
Q 045649 455 FYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNH-IVGEIPVQLGKLFSLTKLILNSNQLSGGIPL 533 (725)
Q Consensus 455 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 533 (725)
+++..+..|..+++|++|++++|.++...+..|..+++|++|++++|+ +....+..+..+++|++|++++|++++. |
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~- 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P- 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-
Confidence 665555556666666666666666665555566777777777777643 3333344577777788888888877743 3
Q ss_pred ccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCC
Q 045649 534 ELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSL 613 (725)
Q Consensus 534 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 613 (725)
.+..+++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|+|++|++++..+..+..+++|
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 46777888888888888888778888888888888888888888778888888888888888888887777778888888
Q ss_pred CEEeCCCCccc
Q 045649 614 EKLNLCHNNLS 624 (725)
Q Consensus 614 ~~L~L~~N~l~ 624 (725)
+.|+|++|++.
T Consensus 293 ~~L~L~~Np~~ 303 (452)
T 3zyi_A 293 VELHLHHNPWN 303 (452)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEccCCCcC
Confidence 88888888765
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=252.67 Aligned_cols=245 Identities=24% Similarity=0.242 Sum_probs=166.5
Q ss_pred EEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCc
Q 045649 375 ELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNN 454 (725)
Q Consensus 375 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~ 454 (725)
.++.++..++ .+|..+. ++++.|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++|+
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4444444444 3343332 345555555555555555555666666666666666666555666666666666666666
Q ss_pred cccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCe-eeecccccccCCCCCCeeeCCCCcCCCCCCc
Q 045649 455 FYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNH-IVGEIPVQLGKLFSLTKLILNSNQLSGGIPL 533 (725)
Q Consensus 455 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 533 (725)
+++..+..|..+++|++|++++|.++...+..|..+++|++|++++|+ +....+..|..+++|++|++++|+++ .+|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-
Confidence 665555556666666666666666665555566777777777777643 33333446677777777777777776 344
Q ss_pred ccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCC
Q 045649 534 ELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSL 613 (725)
Q Consensus 534 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 613 (725)
.+..+++|++|++++|++++..|..|.++++|++|++++|++++..+..|.++++|++|+|++|++++..+..+..+++|
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 36777788888888888888777788888888888888888887777778888888888888888887777777788888
Q ss_pred CEEeCCCCccc
Q 045649 614 EKLNLCHNNLS 624 (725)
Q Consensus 614 ~~L~L~~N~l~ 624 (725)
+.|+|++|++.
T Consensus 282 ~~L~L~~Np~~ 292 (440)
T 3zyj_A 282 ERIHLHHNPWN 292 (440)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEcCCCCcc
Confidence 88888888764
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=4.8e-29 Score=257.96 Aligned_cols=250 Identities=22% Similarity=0.219 Sum_probs=143.9
Q ss_pred ccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCC-CccCCccCc-------CCCCCCEEEccCCcCCcCCCcc
Q 045649 103 FSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQL-TGVIPQEIG-------HLNQLRSLYFDVNQLHGSIPPE 174 (725)
Q Consensus 103 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~-------~l~~L~~L~l~~n~l~~~~p~~ 174 (725)
++..++|++|++++|.+ .+|..+... |++|++++|.+ .+.+|..+. ++++|++|++++|.+++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34456677777777777 566655543 77777777777 334555544 5677777777777777666666
Q ss_pred c--CCCCCCCEEEccccccCCCCccccCCC-----CCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCccc--CCc
Q 045649 175 I--GQLNLINELALCHNNLHGPIPPSLGNL-----SNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGL--IPF 245 (725)
Q Consensus 175 ~--~~l~~L~~L~Ls~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~~~ 245 (725)
+ +.+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..|..++.+++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 6677777777777777655 5555555 6666666666666655556666666666666666665543 122
Q ss_pred Cc--cCCCCCceEEeecccccc--cCC-ccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccc
Q 045649 246 SL--GNLSNLGILYLYSNSLSG--HIP-SVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILG 320 (725)
Q Consensus 246 ~l--~~l~~L~~L~L~~n~l~~--~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 320 (725)
.+ ..+++|++|++++|.+++ .++ ..+.++++|++|++++|++++..|. ..+.
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----------------------~~~~ 250 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA-----------------------PSCD 250 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC-----------------------SCCC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch-----------------------hhhh
Confidence 22 455555555555555541 111 2223445555555555555443321 2233
Q ss_pred cCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecccCccCc
Q 045649 321 NLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSG 385 (725)
Q Consensus 321 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 385 (725)
.+++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 251 ~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 3455555555555554 3444333 5566666666666554 43 5556666666666666653
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=4.4e-29 Score=258.22 Aligned_cols=255 Identities=18% Similarity=0.136 Sum_probs=173.3
Q ss_pred ccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCccc-CcCCccccCCCCCcEEEccCCcCcccccccccCCCCCC
Q 045649 368 GYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFF-GPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLT 446 (725)
Q Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 446 (725)
+..++|+.+++++|.+ .+|..+... |+.+++++|.+. ..+|..+. .....+..+++|+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~-----------------~~~~~~~~l~~L~ 98 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRIL-----------------FGALRVLGISGLQ 98 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHH-----------------HHHHHHHTTSCCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHH-----------------HHHHHhcCcCCcc
Confidence 4445666677777766 455443322 555555555542 22333222 0000001455566
Q ss_pred EEECcCCccccccCccc--cCCCCCcEEeCCCccccCCCCcccCCC-----CCCcEEeCCCCeeeecccccccCCCCCCe
Q 045649 447 FLDFSQNNFYGEISFNW--RNFPKLCTFNASMNNIYGSIPTEIGDL-----SKLQVLDLSSNHIVGEIPVQLGKLFSLTK 519 (725)
Q Consensus 447 ~L~ls~n~l~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 519 (725)
+|++++|++++.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..+..+..+++|++
T Consensus 99 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177 (312)
T ss_dssp EEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred EEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence 66666666655555544 5566666666666666655 5555444 67777777777777766677777777888
Q ss_pred eeCCCCcCCCC--CCccc--CCCCCCcEEEccCCcccc---cchhhhhcccCCCeeeCcCCcCCcCCc-hhhhcCCCCCE
Q 045649 520 LILNSNQLSGG--IPLEL--GSLTELQYIDLSANKLRS---WIPKSIANLLKLYYLNLSNNQFSQKIP-IEVEKLIHLSE 591 (725)
Q Consensus 520 L~Ls~n~l~~~--~~~~l--~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~ 591 (725)
|++++|++.+. .+..+ ..+++|++|++++|++++ .....+.++++|++|++++|++++.+| ..+..+++|++
T Consensus 178 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 257 (312)
T 1wwl_A 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257 (312)
T ss_dssp EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred EECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE
Confidence 88888776653 22233 778889999999998884 222445677899999999999988775 55677899999
Q ss_pred EeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccc
Q 045649 592 LDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQG 649 (725)
Q Consensus 592 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 649 (725)
|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 258 L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 258 LNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred EECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 999999997 6676665 8999999999999976 66 8899999999999999976
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.6e-28 Score=254.54 Aligned_cols=268 Identities=21% Similarity=0.190 Sum_probs=166.1
Q ss_pred ccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEcc
Q 045649 348 SLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFN 427 (725)
Q Consensus 348 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 427 (725)
+++..+++.+.+.......+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+ +..+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l--------- 79 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL--------- 79 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTC---------
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhc---------
Confidence 34445555555544444444445566666666666665544555555555555555555544322 4444
Q ss_pred CCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecc
Q 045649 428 QNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEI 507 (725)
Q Consensus 428 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 507 (725)
++|++|++++|++++.. ..++|+.|++++|.+++..+. .+++|++|++++|++++..
T Consensus 80 ---------------~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~ 136 (317)
T 3o53_A 80 ---------------STLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLR 136 (317)
T ss_dssp ---------------TTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGG
T ss_pred ---------------CCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCcc
Confidence 44444444444444321 124555555555555443322 2455666666666666665
Q ss_pred cccccCCCCCCeeeCCCCcCCCCCCccc-CCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcC
Q 045649 508 PVQLGKLFSLTKLILNSNQLSGGIPLEL-GSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKL 586 (725)
Q Consensus 508 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 586 (725)
+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|++++. |..+..+
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l 213 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSA 213 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGG
T ss_pred chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhccc
Confidence 6666666677777777776665555544 3567777777777777664 2 223467788888888888754 4457788
Q ss_pred CCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCccc-ccCCccccCCCCCCeeeCcC-CcccccCCC
Q 045649 587 IHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLS-GFIPRCFEGMHNLSHIDISY-NELQGPIPN 653 (725)
Q Consensus 587 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~ls~-N~l~g~ip~ 653 (725)
++|++|++++|++++ +|..+..+++|+.|++++|++. +.+|..+..+++|+.+++++ +.+.|..|.
T Consensus 214 ~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 888888888888874 5667788888888888888887 67778888888888888884 456665554
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.5e-28 Score=250.60 Aligned_cols=268 Identities=18% Similarity=0.125 Sum_probs=205.7
Q ss_pred CCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCC
Q 045649 325 LSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICE 404 (725)
Q Consensus 325 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~ 404 (725)
++..+++.+.+.......+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+ +..+++|+.|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4455677777765555666778899999999999999888899999999999999999987654 88999999999999
Q ss_pred CcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCC
Q 045649 405 NHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIP 484 (725)
Q Consensus 405 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 484 (725)
|.+++.. ..++|++|++++|++++..+.. +++|+.|++++|.+++..+
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---------------------------~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCSR---------------------------GQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEECC---------------------------CSSCEEEECCSSCCCSGGG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCccc---------------------------cCCCCEEECCCCCCCCccc
Confidence 9886432 2355666666665555443322 3445555555555555555
Q ss_pred cccCCCCCCcEEeCCCCeeeecccccc-cCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhccc
Q 045649 485 TEIGDLSKLQVLDLSSNHIVGEIPVQL-GKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLL 563 (725)
Q Consensus 485 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 563 (725)
..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|++++. |..+..++
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~ 214 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAA 214 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGT
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccC
Confidence 566667777777777777776666655 3678888888888888754 2 233588999999999999884 44588999
Q ss_pred CCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCC-ccCCccccCCCCCCEEeCCCC-cccccCCcc
Q 045649 564 KLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLD-EEMPFQICNMKSLEKLNLCHN-NLSGFIPRC 630 (725)
Q Consensus 564 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~ 630 (725)
+|++|++++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..++.|+.|++++| .+.+..|..
T Consensus 215 ~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp TCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred cccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 9999999999998 46888999999999999999998 788888999999999999844 566655543
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=8.3e-26 Score=228.50 Aligned_cols=215 Identities=26% Similarity=0.268 Sum_probs=124.4
Q ss_pred CCCcccceeeCCCCCEEEEEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCC
Q 045649 69 SPCAWVGISCNQAERVISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIP 148 (725)
Q Consensus 69 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 148 (725)
++|.|.|+.|...+.++.++++++.++. +|. .+ .+++++|++++|.+.+..+..|.++++|++|++++|.++...+
T Consensus 3 ~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 3 ALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPS-NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp CCBGGGTCSBEEETTTTEEECTTSCCSS-CCS-CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred ccCCCCCCCCEeCCCCCEEEccCCCCCc-cCC-CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence 7899999999766667788888877764 331 12 2467777777777765555566777777777777777664444
Q ss_pred ccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCC
Q 045649 149 QEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKS 228 (725)
Q Consensus 149 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 228 (725)
..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc
Confidence 44566666666666666666544455556666666666666655554455555555555555555554444444455555
Q ss_pred CCEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCccccCCCCCCEEECcCccC
Q 045649 229 LSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQL 287 (725)
Q Consensus 229 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 287 (725)
|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 55555555555544333444444444444444444433333344444444444444433
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=3.2e-29 Score=284.15 Aligned_cols=434 Identities=13% Similarity=0.096 Sum_probs=240.6
Q ss_pred ccCCCCCCCEEEecCCCCCcc---Ccc------------ccCCCCCCCEEEcccCcCcccCCcCcc-CCCCCceEEeecc
Q 045649 198 SLGNLSNLANFYLNNNSLFDS---IPL------------VLGNLKSLSTLDLSKNQLSGLIPFSLG-NLSNLGILYLYSN 261 (725)
Q Consensus 198 ~l~~l~~L~~L~L~~n~l~~~---~p~------------~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n 261 (725)
.+..+++|++|+++++..... .|. ....+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 355677888888888753211 111 123466777777777776655544454 5677777777776
Q ss_pred -ccccc-CCccccCCCCCCEEECcCccCCccCCcccc----CCCCCCEEEccCCc--CCCC-CCcccccCCCCCcccccC
Q 045649 262 -SLSGH-IPSVIGNLKSLLQLDLSENQLSGSIPLSLG----NLSSLTVMSLFSNS--LSGF-IPPILGNLKSLSALGLHI 332 (725)
Q Consensus 262 -~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~----~l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~L~~ 332 (725)
.++.. ++..+.++++|++|++++|.+++..+..+. .+++|++|++++|. ++.. ++.....+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 33321 333344667777777777766544333332 44566666666654 1100 111122345555555555
Q ss_pred ccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEE-eCCCCcccCcC
Q 045649 333 NQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLV-NICENHFFGPI 411 (725)
Q Consensus 333 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L-~l~~n~~~~~~ 411 (725)
|...+.++..+..+++|+.|++..+... +..+.+.+ ++..+.++++|+.+ .+.+.. .+.+
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~-----------------~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~-~~~l 281 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAE-----------------VRPDVYSG-LSVALSGCKELRCLSGFWDAV-PAYL 281 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCC-----------------CCHHHHHH-HHHHHHTCTTCCEEECCBTCC-GGGG
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCc-----------------cchhhHHH-HHHHHhcCCCcccccCCcccc-hhhH
Confidence 4211123444444455555543322100 11111111 12233444455544 222211 1223
Q ss_pred CccccCCCCCcEEEccCCcCcccccc-cccCCCCCCEEECcCCccccc-cCccccCCCCCcEEeCCC---------cccc
Q 045649 412 PKSLRNLTSLERVRFNQNNLSGKVYE-AFGYHPNLTFLDFSQNNFYGE-ISFNWRNFPKLCTFNASM---------NNIY 480 (725)
Q Consensus 412 ~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~l~~---------n~l~ 480 (725)
+..+..+++|++|++++|.+++.... .+..+++|++|++++| +... ++.....+++|+.|++.+ +.++
T Consensus 282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~ 360 (594)
T 2p1m_B 282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360 (594)
T ss_dssp GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC
T ss_pred HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCC
Confidence 33334556666666666665543322 2345666666666665 3221 122222466666666632 3333
Q ss_pred CCCCccc-CCCCCCcEEeCCCCeeeeccccccc-CCCCCCeeeCC--C----CcCCCCC-----CcccCCCCCCcEEEcc
Q 045649 481 GSIPTEI-GDLSKLQVLDLSSNHIVGEIPVQLG-KLFSLTKLILN--S----NQLSGGI-----PLELGSLTELQYIDLS 547 (725)
Q Consensus 481 ~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls--~----n~l~~~~-----~~~l~~l~~L~~L~Ls 547 (725)
+.....+ ..+++|++|+++.|.+++.....+. .+++|+.|+++ + +.+++.. +..+..+++|++|+++
T Consensus 361 ~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~ 440 (594)
T 2p1m_B 361 EQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS 440 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeec
Confidence 2222222 2367888888887877766555554 47888888888 3 4444221 1125667889999997
Q ss_pred CCcccccchhhhhc-ccCCCeeeCcCCcCCcCCchhh-hcCCCCCEEeCCCCCCCccCCc-cccCCCCCCEEeCCCCccc
Q 045649 548 ANKLRSWIPKSIAN-LLKLYYLNLSNNQFSQKIPIEV-EKLIHLSELDLSYNFLDEEMPF-QICNMKSLEKLNLCHNNLS 624 (725)
Q Consensus 548 ~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~ 624 (725)
+ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|++|+|++|++++.... ....+++|++|++++|+++
T Consensus 441 ~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 441 G-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp S-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred C-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 7 666655555655 7889999999998876655555 6788999999999998655443 3445789999999999885
Q ss_pred ccCCccc-cCCCCCCeeeCcCCcccccCC
Q 045649 625 GFIPRCF-EGMHNLSHIDISYNELQGPIP 652 (725)
Q Consensus 625 ~~~p~~l-~~l~~L~~L~ls~N~l~g~ip 652 (725)
......+ ..++.|+...+..+.-....|
T Consensus 520 ~~~~~~l~~~lp~l~i~~~~~~~~~~~~~ 548 (594)
T 2p1m_B 520 FGACKLLGQKMPKLNVEVIDERGAPDSRP 548 (594)
T ss_dssp HHHHHHHHHHCTTEEEEEECSSSCGGGSC
T ss_pred HHHHHHHHHhCCCCEEEEecCCCcccccc
Confidence 4433444 456777666666655443333
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.8e-29 Score=286.21 Aligned_cols=446 Identities=13% Similarity=0.092 Sum_probs=264.8
Q ss_pred CEEEccCCcCCcCCCcccCCCCCCCEEEccccccCC---CCcc------------ccCCCCCCCEEEecCCCCCccCccc
Q 045649 158 RSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHG---PIPP------------SLGNLSNLANFYLNNNSLFDSIPLV 222 (725)
Q Consensus 158 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~---~~~~------------~l~~l~~L~~L~L~~n~l~~~~p~~ 222 (725)
+.+++..+... ..+..+..+++|++|+++++.... ..|. ....+++|++|++++|.+.+..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 45666554322 112335678999999999875321 1111 1246789999999999988777766
Q ss_pred cC-CCCCCCEEEcccC-cCccc-CCcCccCCCCCceEEeecccccccCCcccc----CCCCCCEEECcCcc--CCcc-CC
Q 045649 223 LG-NLKSLSTLDLSKN-QLSGL-IPFSLGNLSNLGILYLYSNSLSGHIPSVIG----NLKSLLQLDLSENQ--LSGS-IP 292 (725)
Q Consensus 223 l~-~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~----~l~~L~~L~Ls~n~--l~~~-~p 292 (725)
+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+.++. .+++|++|++++|. +... ++
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 65 6899999999998 55432 333445799999999999998765554443 67799999999987 2211 11
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCcc-------CCCcCccccCCCccccee-ecccCccccccc
Q 045649 293 LSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQ-------LNGVIPASIGNLSSLRLL-YLYNNGLYGFVP 364 (725)
Q Consensus 293 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~ 364 (725)
.....+++|++|++++|...+.++..+..+++|++|+++.+. +.+ ++..+.++++|+.| .+..... +.++
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~ 282 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLP 282 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHH
Confidence 223457999999999984333377778899999999976543 222 23355666667766 3333221 2334
Q ss_pred hhhccCCcccEEecccCccCccCC-ccCcCCCCCcEEeCCCCcccC-cCCccccCCCCCcEEEccCCcCcccccccccCC
Q 045649 365 EEIGYLKSIFELDLCTNRLSGAIP-HSISNLTELVLVNICENHFFG-PIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYH 442 (725)
Q Consensus 365 ~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~ 442 (725)
..+..+++|++|++++|.+++... ..+..+++|+.|++++| +.. .++.....+++|++|++.++.-.|
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g--------- 352 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV--------- 352 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC---------
T ss_pred HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc---------
Confidence 334455666666666666543211 11334455555555544 211 111112234445555442210000
Q ss_pred CCCCEEECcCCccccccCccc-cCCCCCcEEeCCCccccCCCCcccC-CCCCCcEEeCC--C----Ceeee-----cccc
Q 045649 443 PNLTFLDFSQNNFYGEISFNW-RNFPKLCTFNASMNNIYGSIPTEIG-DLSKLQVLDLS--S----NHIVG-----EIPV 509 (725)
Q Consensus 443 ~~L~~L~ls~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls--~----n~l~~-----~~~~ 509 (725)
..+.+.+++.....+ ..+++|+.|.+..+.+++.....+. .+++|+.|+++ + +.+++ .++.
T Consensus 353 ------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~ 426 (594)
T 2p1m_B 353 ------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA 426 (594)
T ss_dssp ------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH
T ss_pred ------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH
Confidence 001122222211111 1245555555555555443333332 35566666665 2 23331 1222
Q ss_pred cccCCCCCCeeeCCCCcCCCCCCcccCC-CCCCcEEEccCCcccccchhhh-hcccCCCeeeCcCCcCCcCCch-hhhcC
Q 045649 510 QLGKLFSLTKLILNSNQLSGGIPLELGS-LTELQYIDLSANKLRSWIPKSI-ANLLKLYYLNLSNNQFSQKIPI-EVEKL 586 (725)
Q Consensus 510 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~-~~~~l 586 (725)
.+..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+
T Consensus 427 l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l 505 (594)
T 2p1m_B 427 IVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL 505 (594)
T ss_dssp HHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGG
T ss_pred HHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhC
Confidence 355677888888866 555443344443 7788888888888876555555 6688899999999888654433 34557
Q ss_pred CCCCEEeCCCCCCCccCCccc-cCCCCCCEEeCCCCcc
Q 045649 587 IHLSELDLSYNFLDEEMPFQI-CNMKSLEKLNLCHNNL 623 (725)
Q Consensus 587 ~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l 623 (725)
++|++|++++|+++......+ ..++.|+...+..+.-
T Consensus 506 ~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 506 ETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp GGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred CCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 889999999998865444444 4567777766666543
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=9.4e-26 Score=252.19 Aligned_cols=88 Identities=25% Similarity=0.290 Sum_probs=39.4
Q ss_pred CCCcccceeeCC-------CCCEEEEEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCC
Q 045649 69 SPCAWVGISCNQ-------AERVISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSN 141 (725)
Q Consensus 69 ~~c~w~gv~c~~-------~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n 141 (725)
+||.|.|..|.. ...++.+++++++++ .+|. .+. ++|++|++++|.+. .+|. .+++|++|+|++|
T Consensus 20 ~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~-~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N 91 (622)
T 3g06_A 20 PAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGN 91 (622)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCS-CCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSC
T ss_pred CcchhccccccCcccccccCCCCcEEEecCCCcC-ccCh-hhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCC
Confidence 789997754320 123455555555544 2331 111 44455555544443 2332 2344444444444
Q ss_pred CCCccCCccCcCCCCCCEEEccCCcCC
Q 045649 142 QLTGVIPQEIGHLNQLRSLYFDVNQLH 168 (725)
Q Consensus 142 ~l~~~~p~~~~~l~~L~~L~l~~n~l~ 168 (725)
+++ .+|. .+++|++|++++|.++
T Consensus 92 ~l~-~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 92 QLT-SLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp CCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred cCC-cCCC---CCCCCCEEECcCCcCC
Confidence 444 2222 3344444444444443
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=4.8e-27 Score=257.63 Aligned_cols=233 Identities=20% Similarity=0.158 Sum_probs=116.6
Q ss_pred CcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCC
Q 045649 397 LVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASM 476 (725)
Q Consensus 397 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~ 476 (725)
|+.|++++|.+.+..|..|..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ .++|+.|++++
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~ 108 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAAN 108 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCS
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcC
Confidence 3333333333333333344444444444444444443332 4444455555555554443221 14444444444
Q ss_pred ccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccC-CCCCCcEEEccCCcccccc
Q 045649 477 NNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELG-SLTELQYIDLSANKLRSWI 555 (725)
Q Consensus 477 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~ 555 (725)
|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|+|++|.+++..
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 444443322 234455555555555555555555555555555555555554444443 4555555555555555532
Q ss_pred hhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCccc-ccCCccccCC
Q 045649 556 PKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLS-GFIPRCFEGM 634 (725)
Q Consensus 556 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~l~~l 634 (725)
+ ...+++|++|+|++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..+
T Consensus 186 ~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 186 G--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp C--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred c--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 1 2235556666666666654333 35556666666666666654 3444556666666666666665 4455555555
Q ss_pred CCCCeeeCc
Q 045649 635 HNLSHIDIS 643 (725)
Q Consensus 635 ~~L~~L~ls 643 (725)
+.|+.++++
T Consensus 262 ~~L~~l~~~ 270 (487)
T 3oja_A 262 QRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHH
T ss_pred CCCcEEecc
Confidence 555555554
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2e-25 Score=226.65 Aligned_cols=214 Identities=25% Similarity=0.276 Sum_probs=176.8
Q ss_pred CCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeC
Q 045649 443 PNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLIL 522 (725)
Q Consensus 443 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 522 (725)
+++++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45777777777777666666777777777777777777666667888888888888888888777788888888888888
Q ss_pred CCCcCCCCCCcccCCCCCCcEEEccCCccccc-chhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCC----EEeCCCC
Q 045649 523 NSNQLSGGIPLELGSLTELQYIDLSANKLRSW-IPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLS----ELDLSYN 597 (725)
Q Consensus 523 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~----~L~Ls~N 597 (725)
++|++.+..+..+..+++|++|++++|.+++. +|..+.++++|++|++++|++++..+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 88888877676788889999999999998874 478889999999999999999887777887777777 8999999
Q ss_pred CCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCCCCCc
Q 045649 598 FLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTVF 657 (725)
Q Consensus 598 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 657 (725)
++++..+..+.. .+|++|++++|++++..+..|..+++|++|++++|++.|.+|....+
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHH
Confidence 998877766654 48999999999999888888899999999999999999999865433
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.1e-24 Score=243.58 Aligned_cols=264 Identities=24% Similarity=0.292 Sum_probs=136.0
Q ss_pred CCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCC
Q 045649 324 SLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNIC 403 (725)
Q Consensus 324 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~ 403 (725)
+++.|++++|.++ .+|..+. ++|+.|++++|.++. +|. .+++|++|++++|+++ .+|. .+++|+.|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 5777777777777 5555444 577777777777764 343 4567777777777776 3444 45667777777
Q ss_pred CCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCC
Q 045649 404 ENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSI 483 (725)
Q Consensus 404 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 483 (725)
+|.+++. |. .+++|+.|++++|++++... .+++|++|++++|++++. |. .+++|+.|++++|.+++ +
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-C
Confidence 7766553 22 44566666666666654322 135566666666655532 21 23445555555555543 2
Q ss_pred CcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhccc
Q 045649 484 PTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLL 563 (725)
Q Consensus 484 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 563 (725)
| ..+++|+.|++++|++++ +|.. .++|+.|++++|.++ .+|. .+++|++|++++|.+++ +| ..++
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~ 241 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPS 241 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCT
T ss_pred c---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCC
Confidence 2 233445555555555442 2221 234555555555444 2221 12444444555444444 22 2234
Q ss_pred CCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccc
Q 045649 564 KLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCF 631 (725)
Q Consensus 564 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l 631 (725)
+|++|++++|++++ +|. .+++|+.|+|++|+++ .+|..+.++++|+.|+|++|++++.+|..+
T Consensus 242 ~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 242 ELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred cCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 44444444444442 222 3344444444444444 334444444444444444444444444433
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.4e-26 Score=250.87 Aligned_cols=234 Identities=22% Similarity=0.212 Sum_probs=180.8
Q ss_pred cccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECc
Q 045649 372 SIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFS 451 (725)
Q Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls 451 (725)
+|++|++++|.+++..|..|..+++|+.|++++|.+++..| +..+++|++|++++|.+++..+ .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 55555555555555555555555566666666665554443 5666666666666666665432 2678888888
Q ss_pred CCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeeccccccc-CCCCCCeeeCCCCcCCCC
Q 045649 452 QNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLG-KLFSLTKLILNSNQLSGG 530 (725)
Q Consensus 452 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~ 530 (725)
+|.+++..+. .+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 8887766543 357788888888888888888888889999999999999988888776 789999999999999865
Q ss_pred CCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCC-ccCCccccC
Q 045649 531 IPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLD-EEMPFQICN 609 (725)
Q Consensus 531 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~ 609 (725)
. ....+++|++|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+..
T Consensus 185 ~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 K--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp E--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred c--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 3 23468999999999999998544 58999999999999999985 7888999999999999999998 677888888
Q ss_pred CCCCCEEeCC
Q 045649 610 MKSLEKLNLC 619 (725)
Q Consensus 610 l~~L~~L~L~ 619 (725)
++.|+.++++
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 8888888775
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.1e-24 Score=216.92 Aligned_cols=207 Identities=23% Similarity=0.240 Sum_probs=169.4
Q ss_pred CCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCC
Q 045649 444 NLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILN 523 (725)
Q Consensus 444 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 523 (725)
..+.++++++.++. +|..+. ++++.|++++|.+++..+..|..+++|++|++++|+++...+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 34566666666553 343332 467777777777776666677788888888888888876656667788888888888
Q ss_pred CCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccC
Q 045649 524 SNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEM 603 (725)
Q Consensus 524 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 603 (725)
+|++.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 88888777777888899999999999998888888889999999999999998777777899999999999999999888
Q ss_pred CccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCC
Q 045649 604 PFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN 653 (725)
Q Consensus 604 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 653 (725)
+..|..+++|++|++++|++++..+..|..+++|++|++++|++.+.++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 88899999999999999999987777899999999999999999988764
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.9e-24 Score=217.12 Aligned_cols=207 Identities=25% Similarity=0.223 Sum_probs=167.9
Q ss_pred CCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCC
Q 045649 420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLS 499 (725)
Q Consensus 420 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 499 (725)
++++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 56666666666666666566667777777777777776666667777777777777777777777778888888888888
Q ss_pred CCeeeecccccccCCCCCCeeeCCCCcCCCC-CCcccCCCCCCcEEEccCCcccccchhhhhcccCCC----eeeCcCCc
Q 045649 500 SNHIVGEIPVQLGKLFSLTKLILNSNQLSGG-IPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLY----YLNLSNNQ 574 (725)
Q Consensus 500 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~n~ 574 (725)
+|++++..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..+..+..+.+|+ +|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 8888877666788888999999999988864 588899999999999999999998888888888887 89999999
Q ss_pred CCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccC
Q 045649 575 FSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFI 627 (725)
Q Consensus 575 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 627 (725)
+++..+..+.. .+|++|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 189 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 189 MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 98766655554 48999999999999888888899999999999999998653
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.9e-23 Score=212.95 Aligned_cols=204 Identities=24% Similarity=0.206 Sum_probs=156.9
Q ss_pred CCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCee
Q 045649 441 YHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKL 520 (725)
Q Consensus 441 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 520 (725)
.++++++++++++.++. +|..+ .++++.|++++|.+++..+..+..+++|++|++++|.+++..+. ..+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred ccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 34455555555555542 23222 24566666666666666666677777777777777777654332 677888888
Q ss_pred eCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCC
Q 045649 521 ILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLD 600 (725)
Q Consensus 521 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 600 (725)
++++|++. .+|..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|+.|+|++|+++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 88888887 66777888888999999999888877788888899999999999998777777888999999999999998
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccC
Q 045649 601 EEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPI 651 (725)
Q Consensus 601 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 651 (725)
+..+..+..+++|+.|++++|+++ .+|..+..+++|+++++++|++.+.+
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 877777888999999999999998 67777778888999999999988765
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=7.7e-24 Score=214.20 Aligned_cols=203 Identities=22% Similarity=0.201 Sum_probs=161.9
Q ss_pred CCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCee
Q 045649 441 YHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKL 520 (725)
Q Consensus 441 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 520 (725)
.+++|+.|++++|.++.. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 345566666666655432 2355666777777777766653 367778888888888888887777777888888888
Q ss_pred eCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCC
Q 045649 521 ILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLD 600 (725)
Q Consensus 521 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 600 (725)
++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|++++|+++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 88888888777777888888999999999888877777888899999999999998877777888999999999999999
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCCC
Q 045649 601 EEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS 654 (725)
Q Consensus 601 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 654 (725)
+..|..++.+++|+.|++++|++.+. ++.|+.++++.|.++|.+|..
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred ccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 88888888999999999999988754 457888999999999999864
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=1.2e-25 Score=235.47 Aligned_cols=266 Identities=15% Similarity=0.200 Sum_probs=171.0
Q ss_pred CCCcccceeeCCCCCEEEEEcCCCCCccccCcccccCC--CCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCcc
Q 045649 69 SPCAWVGISCNQAERVISINLSSMGLNGTLQEFAFSSF--PHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGV 146 (725)
Q Consensus 69 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 146 (725)
.|..|.++.|+ ...++.++++++.+.. ..+..+ +++++|++++|.+.+..+. +.++++|++|++++|.+++.
T Consensus 35 vc~~W~~~~~~-~~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 35 VCKRWYRLASD-ESLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp SCHHHHHHHTC-STTSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHHHhcC-chhheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 56689999986 4567888888876652 345555 7888888888888776654 55788888888888887755
Q ss_pred -CCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEcccc-ccCC-CCccccCCCCCCCEEEecCC-CCCcc-Ccc
Q 045649 147 -IPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHN-NLHG-PIPPSLGNLSNLANFYLNNN-SLFDS-IPL 221 (725)
Q Consensus 147 -~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~-~~~~~l~~l~~L~~L~L~~n-~l~~~-~p~ 221 (725)
+|..+..+++|++|++++|.+.+..|..++.+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++.
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 6667777888888888888777767777777778888888777 4654 24555666777777777777 66543 455
Q ss_pred ccCCCC-CCCEEEcccC--cCc-ccCCcCccCCCCCceEEeeccc-ccccCCccccCCCCCCEEECcCcc-CCccCCccc
Q 045649 222 VLGNLK-SLSTLDLSKN--QLS-GLIPFSLGNLSNLGILYLYSNS-LSGHIPSVIGNLKSLLQLDLSENQ-LSGSIPLSL 295 (725)
Q Consensus 222 ~l~~l~-~L~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l 295 (725)
.+..++ +|++|++++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l 268 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 268 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH
Confidence 566667 7777777777 344 3344455566666666666666 555555566666666666666663 221111235
Q ss_pred cCCCCCCEEEccCCcCCCCCCcccccC-CCCCcccccCccCCCcCccccC
Q 045649 296 GNLSSLTVMSLFSNSLSGFIPPILGNL-KSLSALGLHINQLNGVIPASIG 344 (725)
Q Consensus 296 ~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~ 344 (725)
.++++|++|++++| ++.. .+..+ .+++.|++++|++++..|..++
T Consensus 269 ~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 269 GEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred hcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCccc
Confidence 55666666666655 2211 22222 2244455555555555554443
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.6e-23 Score=211.95 Aligned_cols=210 Identities=25% Similarity=0.294 Sum_probs=108.6
Q ss_pred cCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCE
Q 045649 104 SSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINE 183 (725)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 183 (725)
..+++|++|++++|.+.. + +.+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..++++++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-- 111 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL-- 111 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC--
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCC--
Confidence 344555555555554432 1 2344555555555555555431 244444555555555554444433344444444
Q ss_pred EEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeecccc
Q 045649 184 LALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSL 263 (725)
Q Consensus 184 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 263 (725)
++|++++|++.+..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 112 ----------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 112 ----------------------KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp ----------------------CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ----------------------CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence 4444444444444444444455555555555555544444445555555555555555
Q ss_pred cccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCcccc
Q 045649 264 SGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASI 343 (725)
Q Consensus 264 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 343 (725)
++..+..++.+++|++|++++|++++..+..+..+++|++|++++|.+.+. +++|+.+++..|.++|.+|.++
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence 544444455555555555555555554444555566666666666655432 4456666777777777777666
Q ss_pred CCCcc
Q 045649 344 GNLSS 348 (725)
Q Consensus 344 ~~l~~ 348 (725)
+.++.
T Consensus 243 ~~~~~ 247 (272)
T 3rfs_A 243 GSVAP 247 (272)
T ss_dssp SCBCG
T ss_pred cccCC
Confidence 65443
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=9e-23 Score=203.75 Aligned_cols=190 Identities=23% Similarity=0.268 Sum_probs=119.1
Q ss_pred CCCcccceeeCCCCCEEEEEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCC
Q 045649 69 SPCAWVGISCNQAERVISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIP 148 (725)
Q Consensus 69 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 148 (725)
+||.|.|++|.. ..+.+++++++++. +| ..+ .+++++|++++|.+.+..+..+.++++|++|++++|.+++..|
T Consensus 3 ~Cp~~~gC~C~~--~~~~l~~~~~~l~~-~p-~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE--GKKEVDCQGKSLDS-VP-SGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG--GGTEEECTTCCCSS-CC-SCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC--CCeEEecCCCCccc-cC-CCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 688999999952 34567777777663 33 122 2567777777777776666667777777777777777776666
Q ss_pred ccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCC
Q 045649 149 QEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKS 228 (725)
Q Consensus 149 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 228 (725)
..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..++.+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 66667777777777777766555555666666666666666666554444555666666666666555544445555555
Q ss_pred CCEEEcccCcCcccCCcCccCCCCCceEEeeccccc
Q 045649 229 LSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLS 264 (725)
Q Consensus 229 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 264 (725)
|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 555555555555544444555555555555555544
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.3e-23 Score=216.98 Aligned_cols=224 Identities=17% Similarity=0.141 Sum_probs=178.7
Q ss_pred CCcEEEccCCcCcccccc---cccCCCCCCEEECcCCccccccCccc--cCCCCCcEEeCCCccccCCCC----cccCCC
Q 045649 420 SLERVRFNQNNLSGKVYE---AFGYHPNLTFLDFSQNNFYGEISFNW--RNFPKLCTFNASMNNIYGSIP----TEIGDL 490 (725)
Q Consensus 420 ~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~ls~n~l~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~l 490 (725)
.++.+.+.++.++..... .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 466677776666543211 12234668888888888888888877 888889999999988887655 345678
Q ss_pred CCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCC--C--CcccCCCCCCcEEEccCCcccccchh----hhhcc
Q 045649 491 SKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGG--I--PLELGSLTELQYIDLSANKLRSWIPK----SIANL 562 (725)
Q Consensus 491 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~--~~~l~~l~~L~~L~Ls~n~l~~~~~~----~~~~l 562 (725)
++|++|++++|++++..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|+++.. +. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhcC
Confidence 8999999999999888888899999999999999987642 1 23346889999999999999753 33 35788
Q ss_pred cCCCeeeCcCCcCCcCCchhhhcC---CCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCe
Q 045649 563 LKLYYLNLSNNQFSQKIPIEVEKL---IHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSH 639 (725)
Q Consensus 563 ~~L~~L~Ls~n~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 639 (725)
++|++|+|++|++.+..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 999999999999998888888777 69999999999998 5666664 8999999999999975 33 678899999
Q ss_pred eeCcCCcccc
Q 045649 640 IDISYNELQG 649 (725)
Q Consensus 640 L~ls~N~l~g 649 (725)
|++++|+++.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999874
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2.3e-22 Score=204.99 Aligned_cols=204 Identities=25% Similarity=0.246 Sum_probs=133.4
Q ss_pred cccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCC
Q 045649 102 AFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLI 181 (725)
Q Consensus 102 ~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 181 (725)
.+..++++++++++++.+. .+|..+. +++++|++++|.+++..|..|..+++|++|++++|.+++..+ .+.+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 4566677777777777765 3454443 577777777777776666677777777777777777764322 2566777
Q ss_pred CEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeecc
Q 045649 182 NELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSN 261 (725)
Q Consensus 182 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 261 (725)
++|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 77777777766 45666666677777777777766655566666777777777777766655555666666666666666
Q ss_pred cccccCCccccCCCCCCEEECcCccCCccCCccccCCCCCCEEEccCCcCC
Q 045649 262 SLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLS 312 (725)
Q Consensus 262 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 312 (725)
++++..+..+..+++|++|++++|+++ .+|..+....+|+.+++++|.+.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 666444444566666666666666666 45555555566666666666554
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.4e-24 Score=229.45 Aligned_cols=255 Identities=18% Similarity=0.196 Sum_probs=128.0
Q ss_pred EecccCccCccCCccCcCCCCCcEEeCCCCcccCcCC----ccccCCC-CCcEEEccCCcCcccccccccCCCCCCEEEC
Q 045649 376 LDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIP----KSLRNLT-SLERVRFNQNNLSGKVYEAFGYHPNLTFLDF 450 (725)
Q Consensus 376 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~l~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 450 (725)
.+++.|.+++.+|..+...++|+.|++++|.+.+..+ ..+..++ +|++|++++|.+++..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-------- 74 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI-------- 74 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH--------
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH--------
Confidence 3455555555555444444445555555555544433 3444444 45555555555544444333322
Q ss_pred cCCccccccCccccC-CCCCcEEeCCCccccCCCCcc----cCCC-CCCcEEeCCCCeeeecccccc----cC-CCCCCe
Q 045649 451 SQNNFYGEISFNWRN-FPKLCTFNASMNNIYGSIPTE----IGDL-SKLQVLDLSSNHIVGEIPVQL----GK-LFSLTK 519 (725)
Q Consensus 451 s~n~l~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~Ls~n~l~~~~~~~~----~~-l~~L~~ 519 (725)
+.. +++|++|++++|.+++..+.. +..+ ++|++|++++|++++..+..+ .. .++|++
T Consensus 75 ------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 75 ------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp ------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred ------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 000 144455555555444443332 2222 455555555555544433322 22 245666
Q ss_pred eeCCCCcCCCCCCcc----cCCCC-CCcEEEccCCcccccchhhhhc----c-cCCCeeeCcCCcCCcC----Cchhhhc
Q 045649 520 LILNSNQLSGGIPLE----LGSLT-ELQYIDLSANKLRSWIPKSIAN----L-LKLYYLNLSNNQFSQK----IPIEVEK 585 (725)
Q Consensus 520 L~Ls~n~l~~~~~~~----l~~l~-~L~~L~Ls~n~l~~~~~~~~~~----l-~~L~~L~Ls~n~l~~~----~p~~~~~ 585 (725)
|++++|.+++..... +..++ +|++|++++|++++..+..+.. + ++|++|+|++|.+.+. ++..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 666666555332222 23333 6666666666666555443332 2 4666666666666542 3334444
Q ss_pred -CCCCCEEeCCCCCCCccCC----ccccCCCCCCEEeCCCCcccccC-------CccccCCCCCCeeeCcCCccccc
Q 045649 586 -LIHLSELDLSYNFLDEEMP----FQICNMKSLEKLNLCHNNLSGFI-------PRCFEGMHNLSHIDISYNELQGP 650 (725)
Q Consensus 586 -l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~~-------p~~l~~l~~L~~L~ls~N~l~g~ 650 (725)
.++|++|+|++|++++..+ ..+..+++|++|++++|.+.+.. +..+..+++|+.||+++|++.+.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 2366666666666655443 22345566666666666643332 23455566666777777766544
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.1e-24 Score=232.74 Aligned_cols=239 Identities=21% Similarity=0.252 Sum_probs=137.3
Q ss_pred cccCCCCCcEEEccCCcCccccc----ccccCCCCCCEEECcCC---ccccccCccc-------cCCCCCcEEeCCCccc
Q 045649 414 SLRNLTSLERVRFNQNNLSGKVY----EAFGYHPNLTFLDFSQN---NFYGEISFNW-------RNFPKLCTFNASMNNI 479 (725)
Q Consensus 414 ~l~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~ls~n---~l~~~~~~~~-------~~~~~L~~L~l~~n~l 479 (725)
.+..+++|++|++++|.+++..+ ..+..+++|++|++++| ++++.+|..+ ..+++|++|++++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 33444444444444444444322 22334455555555553 2233333222 4555666666666665
Q ss_pred cC----CCCcccCCCCCCcEEeCCCCeeeeccccccc----CC---------CCCCeeeCCCCcCC-CCCC---cccCCC
Q 045649 480 YG----SIPTEIGDLSKLQVLDLSSNHIVGEIPVQLG----KL---------FSLTKLILNSNQLS-GGIP---LELGSL 538 (725)
Q Consensus 480 ~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l---------~~L~~L~Ls~n~l~-~~~~---~~l~~l 538 (725)
++ .+|..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|+++ +.++ ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 55 2444555666666666666666533332222 22 66777777777665 2233 244566
Q ss_pred CCCcEEEccCCcccc-----cchhhhhcccCCCeeeCcCCcCC----cCCchhhhcCCCCCEEeCCCCCCCcc----CCc
Q 045649 539 TELQYIDLSANKLRS-----WIPKSIANLLKLYYLNLSNNQFS----QKIPIEVEKLIHLSELDLSYNFLDEE----MPF 605 (725)
Q Consensus 539 ~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~ 605 (725)
++|++|++++|.++. ..+..+..+++|++|+|++|.++ +.+|..+..+++|++|+|++|++++. ++.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 677777777777662 23335666777777777777774 45666677777777777777777655 444
Q ss_pred ccc--CCCCCCEEeCCCCcccc----cCCccc-cCCCCCCeeeCcCCcccccCC
Q 045649 606 QIC--NMKSLEKLNLCHNNLSG----FIPRCF-EGMHNLSHIDISYNELQGPIP 652 (725)
Q Consensus 606 ~l~--~l~~L~~L~L~~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~g~ip 652 (725)
.+. .+++|++|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 553 36777777777777776 366655 456777777777777766543
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=3.4e-22 Score=199.53 Aligned_cols=183 Identities=25% Similarity=0.228 Sum_probs=149.8
Q ss_pred CCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEcc
Q 045649 468 KLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLS 547 (725)
Q Consensus 468 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 547 (725)
..+.++++++.++ .+|..+. +.++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3445555555554 3444433 477888888888887777778888888888888888887777778888888999999
Q ss_pred CCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccC
Q 045649 548 ANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFI 627 (725)
Q Consensus 548 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 627 (725)
+|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..++.+++|++|++++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 88888877778888899999999999998777777888999999999999998888878889999999999999999888
Q ss_pred CccccCCCCCCeeeCcCCcccccCCC
Q 045649 628 PRCFEGMHNLSHIDISYNELQGPIPN 653 (725)
Q Consensus 628 p~~l~~l~~L~~L~ls~N~l~g~ip~ 653 (725)
+..|..+++|++|++++|++.+..+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCCccc
Confidence 88889999999999999999887443
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=4.5e-23 Score=212.92 Aligned_cols=225 Identities=20% Similarity=0.182 Sum_probs=166.8
Q ss_pred CCCCEEeCCCCCCCccCCc---cCcCCCCCCEEEccCCcCCcCCCccc--CCCCCCCEEEccccccCCCCc----cccCC
Q 045649 131 SELQYLDLGSNQLTGVIPQ---EIGHLNQLRSLYFDVNQLHGSIPPEI--GQLNLINELALCHNNLHGPIP----PSLGN 201 (725)
Q Consensus 131 ~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~l~~n~l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~~----~~l~~ 201 (725)
..++.+.+.++.++...-. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3466777766665421100 11234568888888888877777776 778888888888888776544 34457
Q ss_pred CCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCccc--C--CcCccCCCCCceEEeecccccccCCc----cccC
Q 045649 202 LSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGL--I--PFSLGNLSNLGILYLYSNSLSGHIPS----VIGN 273 (725)
Q Consensus 202 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~l~~L~~L~L~~n~l~~~~p~----~l~~ 273 (725)
+++|++|++++|.+.+..+..++.+++|++|++++|++.+. + +..+..+++|++|++++|.++ .++. .++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 88888888888888777778888888888888888887652 1 233467888999999988886 2232 2467
Q ss_pred CCCCCEEECcCccCCccCCccccCC---CCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCcccc
Q 045649 274 LKSLLQLDLSENQLSGSIPLSLGNL---SSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLR 350 (725)
Q Consensus 274 l~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 350 (725)
+++|++|++++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 8899999999999988778777776 68999999999988 5566654 7899999999999864 33 57788999
Q ss_pred eeecccCcccc
Q 045649 351 LLYLYNNGLYG 361 (725)
Q Consensus 351 ~L~L~~n~l~~ 361 (725)
.|++++|+++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999998864
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.7e-22 Score=200.29 Aligned_cols=197 Identities=17% Similarity=0.188 Sum_probs=148.1
Q ss_pred CCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCC-CCccCCccCcCCCCCCEEEccC-CcCCcCCCcccCCCCCCCEE
Q 045649 107 PHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQ-LTGVIPQEIGHLNQLRSLYFDV-NQLHGSIPPEIGQLNLINEL 184 (725)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L 184 (725)
++|++|++++|.+.+..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378899999998887777788889999999999986 7766666788888999999988 88887666778888888888
Q ss_pred EccccccCCCCccccCCCCCCC---EEEecCC-CCCccCccccCCCCCCC-EEEcccCcCcccCCcCccCCCCCceEEee
Q 045649 185 ALCHNNLHGPIPPSLGNLSNLA---NFYLNNN-SLFDSIPLVLGNLKSLS-TLDLSKNQLSGLIPFSLGNLSNLGILYLY 259 (725)
Q Consensus 185 ~Ls~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 259 (725)
++++|.+++ +|. +..+++|+ +|++++| .+.+..+..|.++++|+ +|++++|.++. +|......++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcCCCCCCEEEcC
Confidence 888888876 555 77777777 8888888 77666666677888888 88888888773 34333333777788888
Q ss_pred ccc-ccccCCccccCC-CCCCEEECcCccCCccCCccccCCCCCCEEEccCC
Q 045649 260 SNS-LSGHIPSVIGNL-KSLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSN 309 (725)
Q Consensus 260 ~n~-l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 309 (725)
+|. +++..+..+..+ ++|++|++++|++++ +|.. .+++|+.|++.++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 774 775556667777 777777777777763 3433 4566777776654
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=5.7e-24 Score=222.68 Aligned_cols=230 Identities=16% Similarity=0.159 Sum_probs=157.8
Q ss_pred CCcEEEccCCcCcccccccccCCCCCCEEECcCCccccc-cCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeC
Q 045649 420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGE-ISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDL 498 (725)
Q Consensus 420 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 498 (725)
+++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 344444444444433332 22345555555555555543 4445555666666666666666556666677777777777
Q ss_pred CCC-eeeec-ccccccCCCCCCeeeCCCC-cCCCC-CCcccCCCC-CCcEEEccCC--ccc-ccchhhhhcccCCCeeeC
Q 045649 499 SSN-HIVGE-IPVQLGKLFSLTKLILNSN-QLSGG-IPLELGSLT-ELQYIDLSAN--KLR-SWIPKSIANLLKLYYLNL 570 (725)
Q Consensus 499 s~n-~l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~-~L~~L~Ls~n--~l~-~~~~~~~~~l~~L~~L~L 570 (725)
++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 777 56543 5666777888888888888 77643 455677788 8889999888 454 446777888999999999
Q ss_pred cCCc-CCcCCchhhhcCCCCCEEeCCCCC-CCccCCccccCCCCCCEEeCCCCcccccCCccccCC-CCCCeeeCcCCcc
Q 045649 571 SNNQ-FSQKIPIEVEKLIHLSELDLSYNF-LDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGM-HNLSHIDISYNEL 647 (725)
Q Consensus 571 s~n~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~ls~N~l 647 (725)
++|. +++..+..+..+++|++|++++|. +.......++++++|++|++++| ++ ...+..+ ..+..|++++|++
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCS
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccC
Confidence 9998 777778888999999999999995 33332336788999999999998 33 2244444 3477888999999
Q ss_pred cccCCCC
Q 045649 648 QGPIPNS 654 (725)
Q Consensus 648 ~g~ip~~ 654 (725)
++..|..
T Consensus 306 ~~~~~~~ 312 (336)
T 2ast_B 306 TTIARPT 312 (336)
T ss_dssp CCTTCSS
T ss_pred ccccCCc
Confidence 9988754
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.4e-24 Score=226.49 Aligned_cols=259 Identities=19% Similarity=0.166 Sum_probs=168.1
Q ss_pred eeecccCccccccchhhccCCcccEEecccCccCccCC----ccCcCCC-CCcEEeCCCCcccCcCCccccCC-----CC
Q 045649 351 LLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIP----HSISNLT-ELVLVNICENHFFGPIPKSLRNL-----TS 420 (725)
Q Consensus 351 ~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~~-----~~ 420 (725)
.++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|+.|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46789999999999888877889999999999997766 6777888 89999999999988777666654 88
Q ss_pred CcEEEccCCcCcccccccc----cCC-CCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCC-CCCCc
Q 045649 421 LERVRFNQNNLSGKVYEAF----GYH-PNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGD-LSKLQ 494 (725)
Q Consensus 421 L~~L~l~~n~l~~~~~~~~----~~~-~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~ 494 (725)
|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+.. .+.. .++|+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~L~ 141 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPASIT 141 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTTCC
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCcee
Confidence 8888888888887666543 333 67777777777776544332211 1222 13455
Q ss_pred EEeCCCCeeeec----ccccccCCC-CCCeeeCCCCcCCCCCCccc----CCC-CCCcEEEccCCccccc----chhhhh
Q 045649 495 VLDLSSNHIVGE----IPVQLGKLF-SLTKLILNSNQLSGGIPLEL----GSL-TELQYIDLSANKLRSW----IPKSIA 560 (725)
Q Consensus 495 ~L~Ls~n~l~~~----~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~l----~~l-~~L~~L~Ls~n~l~~~----~~~~~~ 560 (725)
+|++++|.+++. ++..+..++ +|++|++++|++++..+..+ ..+ ++|++|++++|.+++. ++..+.
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 555555554422 222233333 56666666666654444322 233 4666777777666652 333444
Q ss_pred c-ccCCCeeeCcCCcCCcCCch----hhhcCCCCCEEeCCCCCCCccC-------CccccCCCCCCEEeCCCCcccccCC
Q 045649 561 N-LLKLYYLNLSNNQFSQKIPI----EVEKLIHLSELDLSYNFLDEEM-------PFQICNMKSLEKLNLCHNNLSGFIP 628 (725)
Q Consensus 561 ~-l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~-------p~~l~~l~~L~~L~L~~N~l~~~~p 628 (725)
. .++|++|+|++|.+++..+. .+..+++|++|++++|.+.+.. +..+..+++|++||+++|++....+
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 4 34677777777777654442 2355677777777777744332 2345667777788888887776544
Q ss_pred c
Q 045649 629 R 629 (725)
Q Consensus 629 ~ 629 (725)
.
T Consensus 302 ~ 302 (362)
T 3goz_A 302 I 302 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2.8e-24 Score=229.52 Aligned_cols=246 Identities=20% Similarity=0.208 Sum_probs=163.6
Q ss_pred cchhhccCCcccEEecccCccCccC----CccCcCCCCCcEEeCCCCc---ccCcCCccc-------cCCCCCcEEEccC
Q 045649 363 VPEEIGYLKSIFELDLCTNRLSGAI----PHSISNLTELVLVNICENH---FFGPIPKSL-------RNLTSLERVRFNQ 428 (725)
Q Consensus 363 ~~~~l~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~---~~~~~~~~l-------~~~~~L~~L~l~~ 428 (725)
++..+..+++|++|++++|.+++.. +..+..+++|+.|++++|. +.+.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 4556677788888888888887543 3345667777777777753 333444433 4555555555555
Q ss_pred CcCcc----cccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCC---------CCCcE
Q 045649 429 NNLSG----KVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDL---------SKLQV 495 (725)
Q Consensus 429 n~l~~----~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l---------~~L~~ 495 (725)
|.+++ .++..+..+++|++|++++|.+++..+..+. ..+..+ ++|++
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~--------------------~~l~~l~~~~~~~~~~~L~~ 163 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--------------------RALQELAVNKKAKNAPPLRS 163 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH--------------------HHHHHHHHHHHHHTCCCCCE
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH--------------------HHHHHHhhhhhcccCCCCcE
Confidence 55554 2344444555555555555555432221111 112222 67777
Q ss_pred EeCCCCeee-eccc---ccccCCCCCCeeeCCCCcCCC-----CCCcccCCCCCCcEEEccCCccc----ccchhhhhcc
Q 045649 496 LDLSSNHIV-GEIP---VQLGKLFSLTKLILNSNQLSG-----GIPLELGSLTELQYIDLSANKLR----SWIPKSIANL 562 (725)
Q Consensus 496 L~Ls~n~l~-~~~~---~~~~~l~~L~~L~Ls~n~l~~-----~~~~~l~~l~~L~~L~Ls~n~l~----~~~~~~~~~l 562 (725)
|++++|+++ +.++ ..+..+++|++|++++|+++. ..+..+..+++|++|+|++|.++ ..+|..+..+
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 777777775 3333 355667788888888887762 23336777888888888888885 5567788888
Q ss_pred cCCCeeeCcCCcCCcC----Cchhhhc--CCCCCEEeCCCCCCCc----cCCccc-cCCCCCCEEeCCCCcccccCC
Q 045649 563 LKLYYLNLSNNQFSQK----IPIEVEK--LIHLSELDLSYNFLDE----EMPFQI-CNMKSLEKLNLCHNNLSGFIP 628 (725)
Q Consensus 563 ~~L~~L~Ls~n~l~~~----~p~~~~~--l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~L~~N~l~~~~p 628 (725)
++|++|+|++|.+++. +|..+.. +++|++|+|++|++++ .+|..+ .++++|++|++++|++++..|
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 8899999999988765 5566644 8889999999999987 477666 668999999999999987764
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2e-22 Score=199.66 Aligned_cols=197 Identities=16% Similarity=0.160 Sum_probs=143.1
Q ss_pred CCCEEECcCCccccccCccccCCCCCcEEeCCCcc-ccCCCCcccCCCCCCcEEeCCC-CeeeecccccccCCCCCCeee
Q 045649 444 NLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNN-IYGSIPTEIGDLSKLQVLDLSS-NHIVGEIPVQLGKLFSLTKLI 521 (725)
Q Consensus 444 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~ 521 (725)
++++|++++|++++..+..|.++++|+.|++++|+ +++..+..|..+++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665555566666666666666665 5555455667777777777777 777766666777778888888
Q ss_pred CCCCcCCCCCCcccCCCCCCc---EEEccCC-cccccchhhhhcccCCC-eeeCcCCcCCcCCchhhhcCCCCCEEeCCC
Q 045649 522 LNSNQLSGGIPLELGSLTELQ---YIDLSAN-KLRSWIPKSIANLLKLY-YLNLSNNQFSQKIPIEVEKLIHLSELDLSY 596 (725)
Q Consensus 522 Ls~n~l~~~~~~~l~~l~~L~---~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 596 (725)
+++|++++ +|. +..+++|+ +|++++| .+++..+..|.++++|+ +|++++|+++...+..+.. ++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 88888775 554 77777777 8888888 88887777788888888 8888888887433344444 7888888888
Q ss_pred CC-CCccCCccccCC-CCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCc
Q 045649 597 NF-LDEEMPFQICNM-KSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNE 646 (725)
Q Consensus 597 N~-l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~ 646 (725)
|+ +++..+..|..+ ++|++|++++|++++..+. .+++|+.|+++++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 85 887777788888 8888888888888854433 56778888887763
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.5e-21 Score=200.98 Aligned_cols=191 Identities=24% Similarity=0.346 Sum_probs=100.6
Q ss_pred CCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeC
Q 045649 443 PNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLIL 522 (725)
Q Consensus 443 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 522 (725)
++|++|++++|.++.. + .+..+++|+.|++++|.+++..+ +..+++|++|++++|++++. ..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 3444444444443321 1 23444444444444444443322 45555555555555555432 23555555556666
Q ss_pred CCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCcc
Q 045649 523 NSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEE 602 (725)
Q Consensus 523 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 602 (725)
++|++++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++.
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 65555532 2 25555666666666666655322 5556666666666666654322 55666666666666666554
Q ss_pred CCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccc
Q 045649 603 MPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQG 649 (725)
Q Consensus 603 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 649 (725)
.+ +..+++|++|++++|++++..| +..+++|++|++++|++++
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 43 5556666666666666654432 5556666666666666654
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.8e-21 Score=200.28 Aligned_cols=193 Identities=25% Similarity=0.383 Sum_probs=119.1
Q ss_pred CCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEE
Q 045649 393 NLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTF 472 (725)
Q Consensus 393 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L 472 (725)
.+++|+.|++++|.+... + .+..+++|++|++++|.+++..+ + ..+++|+.|
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~------------------------~~l~~L~~L 90 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--L------------------------KNLTKITEL 90 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--G------------------------TTCCSCCEE
T ss_pred HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--H------------------------ccCCCCCEE
Confidence 445566666666655432 2 34445555555555555544333 4 444455555
Q ss_pred eCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCccc
Q 045649 473 NASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLR 552 (725)
Q Consensus 473 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 552 (725)
++++|.+++. ..+..+++|++|++++|++++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 91 ~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 91 ELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp ECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred EccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 5555544432 2455666666666666666543 2 26666777777777777664433 666777777777777777
Q ss_pred ccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccc
Q 045649 553 SWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSG 625 (725)
Q Consensus 553 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 625 (725)
+..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 165 ~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 165 DLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 6433 6777777777777777765433 6777777777777777776553 6777777777777777764
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=4.2e-21 Score=185.77 Aligned_cols=185 Identities=22% Similarity=0.244 Sum_probs=136.3
Q ss_pred CCcccceeeCCCCCEEEEEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCc
Q 045649 70 PCAWVGISCNQAERVISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQ 149 (725)
Q Consensus 70 ~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 149 (725)
.|.|.+|.|+..+ ++ .++ ....++|++|++++|.+.+..+..+..+++|++|++++|++++..+.
T Consensus 6 ~C~~~~v~c~~~~-----------l~-~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (208)
T 2o6s_A 6 SCSGTTVECYSQG-----------RT-SVP---TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70 (208)
T ss_dssp EEETTEEECCSSC-----------CS-SCC---SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred EECCCEEEecCCC-----------cc-CCC---CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence 3899999997422 21 122 22346889999999988876666788888999999998888866666
Q ss_pred cCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCC
Q 045649 150 EIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSL 229 (725)
Q Consensus 150 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 229 (725)
.|..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 67888888888888888886666667888888888888888876666667777888888888887776666567777778
Q ss_pred CEEEcccCcCcccCCcCccCCCCCceEEeecccccccCCccccCCCC
Q 045649 230 STLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHIPSVIGNLKS 276 (725)
Q Consensus 230 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 276 (725)
++|++++|.+.+ .+++|+.|+++.|.++|.+|.+++.++.
T Consensus 151 ~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 151 QYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 888777776553 3456777777777777777766665544
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.6e-20 Score=207.37 Aligned_cols=195 Identities=28% Similarity=0.389 Sum_probs=126.1
Q ss_pred cccce-eeCCCCCEEEEEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCcc
Q 045649 72 AWVGI-SCNQAERVISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQE 150 (725)
Q Consensus 72 ~w~gv-~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 150 (725)
.|.|+ .|. .++++.|+++++.+++ +|. .+ +++|++|+|++|.+. .+| ..+++|++|++++|++++ +|.
T Consensus 49 ~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~- 117 (571)
T 3cvr_A 49 AVSLLKECL-INQFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE- 117 (571)
T ss_dssp HHHHHHHHH-HTTCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred hhhhccccc-cCCccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-
Confidence 79999 675 3578888888888876 552 23 377888888888876 566 456788888888888876 665
Q ss_pred CcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCC
Q 045649 151 IGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLS 230 (725)
Q Consensus 151 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 230 (725)
+.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+
T Consensus 118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~ 183 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLE 183 (571)
T ss_dssp CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCC
T ss_pred hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCC
Confidence 554 78888888887775 555 56777777777777775 444 45677777777777655 555 44 6777
Q ss_pred EEEcccCcCcccCCcCccCCCCC-------ceEEeecccccccCCccccCCCCCCEEECcCccCCccCCcccc
Q 045649 231 TLDLSKNQLSGLIPFSLGNLSNL-------GILYLYSNSLSGHIPSVIGNLKSLLQLDLSENQLSGSIPLSLG 296 (725)
Q Consensus 231 ~L~Ls~n~l~~~~~~~l~~l~~L-------~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 296 (725)
+|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|..+.
T Consensus 184 ~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 184 ALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp EEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred EEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 7777777766 3444 432 44 55555555555 3444444455555555555555554444443
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=183.48 Aligned_cols=159 Identities=19% Similarity=0.200 Sum_probs=133.6
Q ss_pred cEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCC-cccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcC
Q 045649 494 QVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIP-LELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSN 572 (725)
Q Consensus 494 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 572 (725)
+.+++++|.++ .+|..+. +.+++|++++|++++..+ ..|..+++|++|++++|.++++.+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46677777665 3454442 346788888888876544 4477888899999999999887777899999999999999
Q ss_pred CcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCC
Q 045649 573 NQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIP 652 (725)
Q Consensus 573 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 652 (725)
|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++.|.++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99988888889999999999999999999999999999999999999999999889999999999999999999999887
Q ss_pred CCC
Q 045649 653 NST 655 (725)
Q Consensus 653 ~~~ 655 (725)
..+
T Consensus 171 l~~ 173 (220)
T 2v70_A 171 LAW 173 (220)
T ss_dssp GHH
T ss_pred hHH
Confidence 543
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=7e-20 Score=192.31 Aligned_cols=200 Identities=17% Similarity=0.148 Sum_probs=99.2
Q ss_pred CEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCc-cccCCCCCCCE-EEec
Q 045649 134 QYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIP-PSLGNLSNLAN-FYLN 211 (725)
Q Consensus 134 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~-L~L~ 211 (725)
++++.++++++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+| ..|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34444555554 344433 2345555555555553333445555555555555555544333 23455555443 3344
Q ss_pred CCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeec-ccccccCCccccCCC-CCCEEECcCccCCc
Q 045649 212 NNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYS-NSLSGHIPSVIGNLK-SLLQLDLSENQLSG 289 (725)
Q Consensus 212 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~ 289 (725)
+|++....|..|..+++|++|++++|.++...+..+....++..+++.+ +.+....+..+..+. .++.|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 4555555555555666666666666665554444444555555555544 234333333344332 4555666666655
Q ss_pred cCCccccCCCCCCEEEccC-CcCCCCCCcccccCCCCCcccccCccCCC
Q 045649 290 SIPLSLGNLSSLTVMSLFS-NSLSGFIPPILGNLKSLSALGLHINQLNG 337 (725)
Q Consensus 290 ~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 337 (725)
.+|.......+|+++++.+ |.++...+..|..+++|++|++++|+++.
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 2333333444555555553 33333223345555555555555555553
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=4.8e-20 Score=193.52 Aligned_cols=240 Identities=16% Similarity=0.115 Sum_probs=143.1
Q ss_pred cEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCccccc-ccccCCCCCCE-EECc
Q 045649 374 FELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVY-EAFGYHPNLTF-LDFS 451 (725)
Q Consensus 374 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~-L~ls 451 (725)
++++-++++++ .+|..+ .++++.|++++|+++...+..|.++++|++|++++|++.+.++ ..|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 46777777777 566554 2567777777777766555567777777777777777655443 45666666654 4445
Q ss_pred CCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCC-CeeeecccccccCCC-CCCeeeCCCCcCCC
Q 045649 452 QNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSS-NHIVGEIPVQLGKLF-SLTKLILNSNQLSG 529 (725)
Q Consensus 452 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~ 529 (725)
.|+++...+..|..+++|++|++++|.+.+..+..+....++..+++.+ +++....+..|..+. .++.|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 5667666666677777777777777777665555555566666666644 345444444444443 46666666666663
Q ss_pred CCCcccCCCCCCcEEEccC-CcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCcccc
Q 045649 530 GIPLELGSLTELQYIDLSA-NKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQIC 608 (725)
Q Consensus 530 ~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 608 (725)
++.......+|+.+++++ |.++.+.+..|.++++|++||+++|+++...+.. +.+|+.|.+.++.-...+| .+.
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence 333333445666666653 4455544455666666666666666665433322 3344445444443334444 255
Q ss_pred CCCCCCEEeCCCC
Q 045649 609 NMKSLEKLNLCHN 621 (725)
Q Consensus 609 ~l~~L~~L~L~~N 621 (725)
++++|+.+++.++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 6666666666554
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.5e-19 Score=174.81 Aligned_cols=110 Identities=28% Similarity=0.349 Sum_probs=46.0
Q ss_pred CCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEe
Q 045649 131 SELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYL 210 (725)
Q Consensus 131 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 210 (725)
++|++|++++|++++..+..|+.+++|++|++++|++.+..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34555555555554433334444445555555444444333333344444444444444444333333333344444444
Q ss_pred cCCCCCccCccccCCCCCCCEEEcccCcCc
Q 045649 211 NNNSLFDSIPLVLGNLKSLSTLDLSKNQLS 240 (725)
Q Consensus 211 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 240 (725)
++|.+.+..+..+..+++|++|++++|.++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 443333333323333333333333333333
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=3e-20 Score=181.01 Aligned_cols=157 Identities=22% Similarity=0.261 Sum_probs=131.7
Q ss_pred cEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCC
Q 045649 494 QVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNN 573 (725)
Q Consensus 494 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 573 (725)
+.++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666666665 4454443 57888888888888766777888888999999999988888888999999999999999
Q ss_pred cCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCC
Q 045649 574 QFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN 653 (725)
Q Consensus 574 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 653 (725)
++++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++.+.++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 99876667788899999999999999998888999999999999999999988888899999999999999999886653
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=2e-19 Score=198.53 Aligned_cols=187 Identities=24% Similarity=0.292 Sum_probs=132.4
Q ss_pred CCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEcc
Q 045649 108 HLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALC 187 (725)
Q Consensus 108 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls 187 (725)
+|++|++++|.+.+ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78899999988876 776553 78899999999888 566 457888888888888886 666 655 88888888
Q ss_pred ccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeecccccccC
Q 045649 188 HNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNSLSGHI 267 (725)
Q Consensus 188 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 267 (725)
+|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 888876 555 56788888888888765 554 46778888888888776 455 54 77777777777777 55
Q ss_pred CccccCCCCC-------CEEECcCccCCccCCccccCCCCCCEEEccCCcCCCCCCcccccC
Q 045649 268 PSVIGNLKSL-------LQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNL 322 (725)
Q Consensus 268 p~~l~~l~~L-------~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 322 (725)
|. +.. +| +.|++++|+++ .+|..+..+++|+.|++++|.+++.+|..+..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 55 443 55 66666666666 456555556666666666666666555555443
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=6.1e-19 Score=173.00 Aligned_cols=157 Identities=25% Similarity=0.298 Sum_probs=132.7
Q ss_pred CcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcC
Q 045649 493 LQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSN 572 (725)
Q Consensus 493 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 572 (725)
.+.++.+++.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|+|++|.++.+.+..|..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456777777665 4554443 6788888888888888788888889999999999999887777788899999999999
Q ss_pred CcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCC
Q 045649 573 NQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIP 652 (725)
Q Consensus 573 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 652 (725)
|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++.+.++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 9998877777899999999999999997 667788999999999999999998877889999999999999999998876
Q ss_pred C
Q 045649 653 N 653 (725)
Q Consensus 653 ~ 653 (725)
.
T Consensus 177 ~ 177 (229)
T 3e6j_A 177 D 177 (229)
T ss_dssp G
T ss_pred h
Confidence 3
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.9e-19 Score=189.67 Aligned_cols=178 Identities=23% Similarity=0.216 Sum_probs=119.8
Q ss_pred EEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeeccccccc-CCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCC
Q 045649 471 TFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLG-KLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSAN 549 (725)
Q Consensus 471 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 549 (725)
.++++++.++. +|..+. +.++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 34444444432 333332 3466677777777666666565 6777777777777777666666777777777777777
Q ss_pred cccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccc---cCCCCCCEEeCCCCccccc
Q 045649 550 KLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQI---CNMKSLEKLNLCHNNLSGF 626 (725)
Q Consensus 550 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~ 626 (725)
++++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+ ..+++|+.|+|++|++++.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 7777666667777777777777777777667777777777777777777776555555 5577777777777777766
Q ss_pred CCccccCCCC--CCeeeCcCCcccccC
Q 045649 627 IPRCFEGMHN--LSHIDISYNELQGPI 651 (725)
Q Consensus 627 ~p~~l~~l~~--L~~L~ls~N~l~g~i 651 (725)
.+..+..++. ++.|++++|++.+.+
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred CHHHhhhccHhhcceEEecCCCccCCc
Confidence 5566666665 377788888777654
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=6.6e-19 Score=179.48 Aligned_cols=170 Identities=24% Similarity=0.282 Sum_probs=83.9
Q ss_pred CCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCee
Q 045649 441 YHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKL 520 (725)
Q Consensus 441 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 520 (725)
.+++|+.|++++|.+... ..+..+++|+.|++++|.+++..+ +..+++|++|++++|++++. ..+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 455666666666666543 124555555555555555554333 55555555555555555431 124455555555
Q ss_pred eCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCC
Q 045649 521 ILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLD 600 (725)
Q Consensus 521 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 600 (725)
++++|++++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 5555555432 2344445555555555555443 344444555555555555443322 444445555555555444
Q ss_pred ccCCccccCCCCCCEEeCCCCccc
Q 045649 601 EEMPFQICNMKSLEKLNLCHNNLS 624 (725)
Q Consensus 601 ~~~p~~l~~l~~L~~L~L~~N~l~ 624 (725)
+. + .+..+++|+.|++++|+++
T Consensus 192 ~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 DL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp BC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CC-h-hhccCCCCCEEECcCCccc
Confidence 32 1 2444444444444444444
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=168.64 Aligned_cols=155 Identities=22% Similarity=0.147 Sum_probs=130.3
Q ss_pred EEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeeccc-ccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCC
Q 045649 471 TFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIP-VQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSAN 549 (725)
Q Consensus 471 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 549 (725)
.+++++|.++. +|..+. +.+++|++++|++++..+ ..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 55566655543 444432 346788888888887754 45788899999999999998777778899999999999999
Q ss_pred cccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCC
Q 045649 550 KLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIP 628 (725)
Q Consensus 550 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 628 (725)
.+++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++.+..+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9999888889999999999999999998889999999999999999999999999999999999999999999986543
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=3.5e-18 Score=167.58 Aligned_cols=157 Identities=25% Similarity=0.276 Sum_probs=110.2
Q ss_pred CCCcccceeeCCCCCEEEEEcCCCCCccccCcccccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCC
Q 045649 69 SPCAWVGISCNQAERVISINLSSMGLNGTLQEFAFSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIP 148 (725)
Q Consensus 69 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 148 (725)
..|+|.+|.|+.. .+. .+|. .-.++|++|+|++|.+.+..|..|..+++|++|+|++|++.+..+
T Consensus 17 ~~Cs~~~v~c~~~-----------~l~-~ip~---~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 81 (229)
T 3e6j_A 17 CSCSGTTVDCRSK-----------RHA-SVPA---GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV 81 (229)
T ss_dssp CEEETTEEECTTS-----------CCS-SCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CEEeCCEeEccCC-----------CcC-ccCC---CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh
Confidence 6799999999632 121 2231 122678888888888887777778888888888888888875555
Q ss_pred ccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCC
Q 045649 149 QEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKS 228 (725)
Q Consensus 149 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 228 (725)
..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|++.+..+..+..+++
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 160 (229)
T 3e6j_A 82 GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCC
Confidence 56777888888888888777665666677777777777777776 55666666777777777777666555555666666
Q ss_pred CCEEEcccCcCcc
Q 045649 229 LSTLDLSKNQLSG 241 (725)
Q Consensus 229 L~~L~Ls~n~l~~ 241 (725)
|++|++++|.+..
T Consensus 161 L~~L~l~~N~~~c 173 (229)
T 3e6j_A 161 LTHAYLFGNPWDC 173 (229)
T ss_dssp CCEEECTTSCBCT
T ss_pred CCEEEeeCCCccC
Confidence 6666666666654
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.3e-18 Score=167.65 Aligned_cols=152 Identities=20% Similarity=0.220 Sum_probs=121.2
Q ss_pred EEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCc
Q 045649 471 TFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANK 550 (725)
Q Consensus 471 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 550 (725)
.++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|++|++++|++++..|..|..+++|++|+|++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4444444444 2343332 567888888888877777778888888888888888887778888888888888888888
Q ss_pred ccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccc
Q 045649 551 LRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSG 625 (725)
Q Consensus 551 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 625 (725)
++.+.+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 888766677888888899999998888888888888999999999999988888888888999999999998864
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.1e-18 Score=177.98 Aligned_cols=172 Identities=23% Similarity=0.365 Sum_probs=129.6
Q ss_pred cCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcE
Q 045649 464 RNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQY 543 (725)
Q Consensus 464 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 543 (725)
..+++|+.|++++|.+... ..+..+++|++|++++|++++..+ +..+++|++|++++|.+++ ++ .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 4567788888888877654 246777888888888888876544 7778888888888888774 33 4777888888
Q ss_pred EEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcc
Q 045649 544 IDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNL 623 (725)
Q Consensus 544 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 623 (725)
|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|++|++++|++++..| +..+++|++|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 88888888774 4577788888888888888754 567788888888888888877655 77788888888888888
Q ss_pred cccCCccccCCCCCCeeeCcCCcccc
Q 045649 624 SGFIPRCFEGMHNLSHIDISYNELQG 649 (725)
Q Consensus 624 ~~~~p~~l~~l~~L~~L~ls~N~l~g 649 (725)
++. | .+..+++|+.|++++|++..
T Consensus 191 ~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 191 SDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCC-h-hhccCCCCCEEECcCCcccC
Confidence 753 3 37778888888888887765
No 110
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=3e-20 Score=212.94 Aligned_cols=230 Identities=24% Similarity=0.249 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccceeeCCCCCEEEEEcCCCCCccccCccccc
Q 045649 25 STKEALALLKWKRSLQNQNSSLLTSWTLYPANATNVPSYSKAKLSPCAWVGISCNQAERVISINLSSMGLNGTLQEFAFS 104 (725)
Q Consensus 25 ~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~l~ 104 (725)
...++++|+++.++........-..|. ...+ ..+.|.++.+.. .++++++|..+.+..... .
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~----------~~~~~~~~~~s~-~~~~~l~L~~n~~~~~~~--~-- 191 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPT---GDST----------PSGTATNSAVST-PLTPKIELFANGKDEANQ--A-- 191 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCc---CCCC----------ccccCCCceecC-CccceEEeeCCCCCcchh--h--
Confidence 356788999999877543333344553 1222 557899988864 789999998887765321 2
Q ss_pred CCCCCCEEECCCCCCCC---------CCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCccc
Q 045649 105 SFPHLVRLNLSFNIVFG---------TIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEI 175 (725)
Q Consensus 105 ~l~~L~~L~Ls~n~~~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 175 (725)
.++.++|+.+.+.+ ..|..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|
T Consensus 192 ---~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 266 (727)
T 4b8c_D 192 ---LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI 266 (727)
T ss_dssp ---------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG
T ss_pred ---HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh
Confidence 23444444443322 34566777777888888877777 56666667777777777777777 677777
Q ss_pred CCCCCCCEEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCC-Cc
Q 045649 176 GQLNLINELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSN-LG 254 (725)
Q Consensus 176 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~ 254 (725)
+++++|++|+|++|.++ .+|..|+++++|++|+|++|.+. .+|..|+++++|++|+|++|.+++.+|..+..+.. +.
T Consensus 267 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~ 344 (727)
T 4b8c_D 267 KNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGL 344 (727)
T ss_dssp GGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHH
T ss_pred hCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhh
Confidence 77777777777777777 56777777777777777777774 56666777777777777777777766665543321 22
Q ss_pred eEEeecccccccCCccccCCCCCCEEECcCc
Q 045649 255 ILYLYSNSLSGHIPSVIGNLKSLLQLDLSEN 285 (725)
Q Consensus 255 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 285 (725)
.+++++|.+++.+|.. |+.|+++.|
T Consensus 345 ~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 345 IFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp HHHHHHCCCCCCCCCC---------------
T ss_pred HHhhccCcccCcCccc------cceeEeecc
Confidence 3566777776666543 344455544
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=2e-18 Score=192.75 Aligned_cols=173 Identities=28% Similarity=0.430 Sum_probs=106.7
Q ss_pred ccCCCCCCEEECCCCCCCCCCccccCCCCCCCEEeCCCCCCCccCCccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCC
Q 045649 103 FSSFPHLVRLNLSFNIVFGTIPPQVGNLSELQYLDLGSNQLTGVIPQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLIN 182 (725)
Q Consensus 103 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 182 (725)
+..+++|+.|++++|.+... + .+..+++|++|+|++|.+.+..| +..+++|++|+|++|.+.+ +| .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 45666777777777766432 3 46677777777777777765433 6677777777777776653 22 566666777
Q ss_pred EEEccccccCCCCccccCCCCCCCEEEecCCCCCccCccccCCCCCCCEEEcccCcCcccCCcCccCCCCCceEEeeccc
Q 045649 183 ELALCHNNLHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVLGNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLYSNS 262 (725)
Q Consensus 183 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 262 (725)
+|+|++|.+.+. +.+..+++|+.|+|++|.+.+. ..+..+++|++|+|++|.+++..| +..+++|+.|+|++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 777777666642 3466666666666666666543 345566666666666666665444 5556666666666666
Q ss_pred ccccCCccccCCCCCCEEECcCccCCc
Q 045649 263 LSGHIPSVIGNLKSLLQLDLSENQLSG 289 (725)
Q Consensus 263 l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 289 (725)
+++. ..+..+++|+.|+|++|++.+
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcC
Confidence 6532 235556666666666665543
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=1.4e-18 Score=165.32 Aligned_cols=153 Identities=23% Similarity=0.293 Sum_probs=124.5
Q ss_pred CeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchh-hhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCC
Q 045649 518 TKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPK-SIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSY 596 (725)
Q Consensus 518 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 596 (725)
+.+++++|.++ .+|..+. .++++|++++|.+++..+. .|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 66777777775 5665554 3788888888888886654 488899999999999999988888999999999999999
Q ss_pred CCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCCCCCcCce---ecccCCCCCCCCC
Q 045649 597 NFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTVFKDA---HVEGNKGLCGNVN 673 (725)
Q Consensus 597 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~---~~~gn~~lc~~~~ 673 (725)
|++++..+..|..+++|++|++++|++++.+|..|..+++|++|++++|++.|.++..+...++ .+.++...|+.|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 9999988888999999999999999999999999999999999999999999888754322222 4556666787664
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=3.7e-18 Score=190.63 Aligned_cols=171 Identities=27% Similarity=0.313 Sum_probs=74.6
Q ss_pred cCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcE
Q 045649 416 RNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQV 495 (725)
Q Consensus 416 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 495 (725)
..+++|+.|++++|.+.... .+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+. ..+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 34455555555555554331 34445555555555555544332 44444555555554444431 13444444444
Q ss_pred EeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcC
Q 045649 496 LDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQF 575 (725)
Q Consensus 496 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 575 (725)
|+|++|++++. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|++
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 44444444321 2234444444444444444432 233444444444444444444322 34444444444444444
Q ss_pred CcCCchhhhcCCCCCEEeCCCCCCC
Q 045649 576 SQKIPIEVEKLIHLSELDLSYNFLD 600 (725)
Q Consensus 576 ~~~~p~~~~~l~~L~~L~Ls~N~l~ 600 (725)
++. ..+..+++|+.|+|++|+++
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CCC--hHHccCCCCCEEEccCCcCc
Confidence 332 12344444444444444443
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.8e-18 Score=180.77 Aligned_cols=176 Identities=23% Similarity=0.226 Sum_probs=109.5
Q ss_pred cEEEccCCcCcccccccccCCCCCCEEECcCCccccccCcccc-CCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCC
Q 045649 422 ERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWR-NFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSS 500 (725)
Q Consensus 422 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 500 (725)
+.++++++.++.. |..+ .+.++.|++++|++++..+..+. ++++|+.|++++|.+++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~i-P~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSC-CSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcc-CccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4677777776653 3322 23467777777777766666665 666777777777766666666666666666666666
Q ss_pred CeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhh---hcccCCCeeeCcCCcCCc
Q 045649 501 NHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSI---ANLLKLYYLNLSNNQFSQ 577 (725)
Q Consensus 501 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~ 577 (725)
|++++..+..|..+++|++|+|++|++.+..+..|..+++|++|+|++|.++++.+..| ..+++|+.|+|++|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 66665555566666666666666666665556666666666666666666666444444 446666666666666665
Q ss_pred CCchhhhcCCC--CCEEeCCCCCCC
Q 045649 578 KIPIEVEKLIH--LSELDLSYNFLD 600 (725)
Q Consensus 578 ~~p~~~~~l~~--L~~L~Ls~N~l~ 600 (725)
..+..+..++. ++.|+|++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 54455555554 255666666654
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=3.5e-18 Score=163.50 Aligned_cols=154 Identities=16% Similarity=0.284 Sum_probs=102.0
Q ss_pred CCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCee
Q 045649 489 DLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYL 568 (725)
Q Consensus 489 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 568 (725)
.+++|++|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 4455666666666665 334 4566666777777776554 22356667777777777777776666667777777777
Q ss_pred eCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCccc
Q 045649 569 NLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648 (725)
Q Consensus 569 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 648 (725)
++++|++++..|..+..+++|++|++++|++.+.+| .+..+++|++|++++|++++. + .+..+++|++|++++|++.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 777777776667777777777777777776223344 567777777777777777753 3 6677777888888887765
Q ss_pred c
Q 045649 649 G 649 (725)
Q Consensus 649 g 649 (725)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.1e-17 Score=160.11 Aligned_cols=154 Identities=19% Similarity=0.236 Sum_probs=111.2
Q ss_pred CCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEE
Q 045649 465 NFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYI 544 (725)
Q Consensus 465 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 544 (725)
.+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3445555555555554 333 4566667777777777553 23356777888888888888876667778888888888
Q ss_pred EccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCccc
Q 045649 545 DLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLS 624 (725)
Q Consensus 545 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 624 (725)
++++|.+++..+..+..+++|++|++++|++.+.+| .+..+++|++|++++|++++.. .+..+++|+.|++++|++.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 888888888778888888888888888888333555 6888888999999999887643 6788889999999998875
Q ss_pred c
Q 045649 625 G 625 (725)
Q Consensus 625 ~ 625 (725)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=4.7e-18 Score=170.34 Aligned_cols=168 Identities=23% Similarity=0.254 Sum_probs=85.5
Q ss_pred CCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeC
Q 045649 443 PNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLIL 522 (725)
Q Consensus 443 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 522 (725)
.++..++++++.+++.. .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34455556666555433 34555666666666665543 22 45555555555555555554333 555555555555
Q ss_pred CCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCcc
Q 045649 523 NSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEE 602 (725)
Q Consensus 523 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 602 (725)
++|++++. |.. .. ++|++|++++|.+++. ..+..+++|++|++++|++++. + .+..+++|++|++++|++++.
T Consensus 93 ~~N~l~~l-~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNL-NGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCC-TTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCc-Ccc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 55555532 221 11 5555555555555542 2345555555555555555432 2 345555555555555555444
Q ss_pred CCccccCCCCCCEEeCCCCcccc
Q 045649 603 MPFQICNMKSLEKLNLCHNNLSG 625 (725)
Q Consensus 603 ~p~~l~~l~~L~~L~L~~N~l~~ 625 (725)
..+..+++|+.|++++|++++
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEEC
T ss_pred --HHhccCCCCCEEeCCCCcccC
Confidence 334455555555555555543
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=3.7e-20 Score=205.62 Aligned_cols=122 Identities=29% Similarity=0.266 Sum_probs=82.4
Q ss_pred CCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCC
Q 045649 516 SLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLS 595 (725)
Q Consensus 516 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 595 (725)
.|+.|++++|.+++ +|. ++.+++|+.|++++|.++. +|..+.++++|++|+|++|++++ +| .++.+++|++|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCcccccc-cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 36677777777764 454 6677777777777777763 56677777777777777777765 45 67777777777777
Q ss_pred CCCCCccC-CccccCCCCCCEEeCCCCcccccCCcc---ccCCCCCCeeeC
Q 045649 596 YNFLDEEM-PFQICNMKSLEKLNLCHNNLSGFIPRC---FEGMHNLSHIDI 642 (725)
Q Consensus 596 ~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~~---l~~l~~L~~L~l 642 (725)
+|++++.+ |..++.+++|+.|+|++|++++.+|.. +..+++|+.||+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77777665 677777777777777777777654432 233666666653
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=5e-18 Score=176.57 Aligned_cols=221 Identities=11% Similarity=0.001 Sum_probs=144.4
Q ss_pred CCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccc----cCCCCcccCCCCCC
Q 045649 418 LTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNI----YGSIPTEIGDLSKL 493 (725)
Q Consensus 418 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l----~~~~~~~~~~l~~L 493 (725)
|++|+.+++.+ .++.+...+|.++++|+.+++++|.+....+..|.++.++..+....+.. .......|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77777777777 66666667777777777777777777766667777777666666554322 11222344455555
Q ss_pred c-EEeCCCCee-eecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCc
Q 045649 494 Q-VLDLSSNHI-VGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLS 571 (725)
Q Consensus 494 ~-~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 571 (725)
+ .+++....- .......-....+++.+.+.++-...........+++|+.+++++|.++.+.+.+|.+|++|++++++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 5 444433211 10111111123445555555431110000001236788888888888888777788888888888888
Q ss_pred CCcCCcCCchhhhcCCCCC-EEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeee
Q 045649 572 NNQFSQKIPIEVEKLIHLS-ELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHID 641 (725)
Q Consensus 572 ~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 641 (725)
+| +....+.+|.++++|+ .+++.+ .++...+.+|.++++|+.+++++|.++...+..|.++++|+.++
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 87 7666677788888888 888888 67777778888888888888888888877778888888888875
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=3.8e-20 Score=205.47 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=124.2
Q ss_pred cCCCCcccCCCCCCcEEe-CCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhh
Q 045649 480 YGSIPTEIGDLSKLQVLD-LSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKS 558 (725)
Q Consensus 480 ~~~~~~~~~~l~~L~~L~-Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 558 (725)
.+..|..++.+++|+.|+ ++.|.+. +|+.+.+++|.+.+..+ ..|+.|++++|.+++ +|.
T Consensus 398 ~~~~~~~l~~l~~L~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~- 458 (567)
T 1dce_A 398 LLYEKETLQYFSTLKAVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH- 458 (567)
T ss_dssp GGGHHHHHHHHHHHHHHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-
T ss_pred ccCCHHHHHHHHhcccCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-
Confidence 344555556666666666 4444332 34455566666553211 258999999999998 565
Q ss_pred hhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccC-CccccCCCCC
Q 045649 559 IANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFI-PRCFEGMHNL 637 (725)
Q Consensus 559 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L 637 (725)
+..+++|+.|+|++|+++ .+|..++.+++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.+ |..+..+++|
T Consensus 459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535 (567)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC
Confidence 999999999999999998 789999999999999999999988 56 8999999999999999999887 9999999999
Q ss_pred CeeeCcCCcccccCCCC
Q 045649 638 SHIDISYNELQGPIPNS 654 (725)
Q Consensus 638 ~~L~ls~N~l~g~ip~~ 654 (725)
++|++++|++++..|..
T Consensus 536 ~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 536 VLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp CEEECTTSGGGGSSSCT
T ss_pred CEEEecCCcCCCCccHH
Confidence 99999999999987643
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.7e-17 Score=166.30 Aligned_cols=167 Identities=22% Similarity=0.265 Sum_probs=81.5
Q ss_pred CCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEcc
Q 045649 468 KLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLS 547 (725)
Q Consensus 468 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 547 (725)
++..++++++.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3444444444444322 34444555555555555542 22 34455555555555555553322 4555555555555
Q ss_pred CCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccC
Q 045649 548 ANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFI 627 (725)
Q Consensus 548 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 627 (725)
+|++++. |. +.. ++|++|++++|++++. ..+..+++|++|++++|++++. + .++.+++|+.|++++|++++.
T Consensus 94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 5555542 21 122 4555555555555432 2355555555555555555443 1 345555555555555555544
Q ss_pred CccccCCCCCCeeeCcCCcccc
Q 045649 628 PRCFEGMHNLSHIDISYNELQG 649 (725)
Q Consensus 628 p~~l~~l~~L~~L~ls~N~l~g 649 (725)
..+..+++|++|++++|++.+
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEEC
T ss_pred -HHhccCCCCCEEeCCCCcccC
Confidence 344555555555555555544
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=3.2e-18 Score=196.17 Aligned_cols=177 Identities=24% Similarity=0.330 Sum_probs=78.7
Q ss_pred CCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcc---------cccccccCCCCCCEEECcCCccccccCccccC
Q 045649 395 TELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSG---------KVYEAFGYHPNLTFLDFSQNNFYGEISFNWRN 465 (725)
Q Consensus 395 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~---------~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 465 (725)
+.++.+++.+|.+... +..+ ++.++++.+.+.+ ..+..+..++.|+.|++++|.+. .++..+..
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~ 245 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFK 245 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGG
T ss_pred CccceEEeeCCCCCcc-hhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcC
Confidence 4466677777766542 2222 2333333333322 23445555666666666666655 44444445
Q ss_pred CCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEE
Q 045649 466 FPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYID 545 (725)
Q Consensus 466 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 545 (725)
+++|+.|++++|.++ .+|..++.+++|++|+|++|+++ .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+
T Consensus 246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence 666666666666665 55555666666666666666665 45555666666666666666554 4455566666666666
Q ss_pred ccCCcccccchhhhhcccC-CCeeeCcCCcCCcCCch
Q 045649 546 LSANKLRSWIPKSIANLLK-LYYLNLSNNQFSQKIPI 581 (725)
Q Consensus 546 Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~p~ 581 (725)
|++|.+++.+|..+..+.. +..++|++|.+++.+|.
T Consensus 323 L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 323 VEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 6666666555555544321 12355556665555554
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=4.4e-17 Score=154.93 Aligned_cols=132 Identities=25% Similarity=0.283 Sum_probs=103.8
Q ss_pred cEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCc-ccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcC
Q 045649 494 QVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPL-ELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSN 572 (725)
Q Consensus 494 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 572 (725)
+++++++|.++ .+|..+.. ++++|++++|++++..+. .+..+++|++|++++|.+++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56677777664 45554433 677888888887765553 477788888888888888887788888888888888888
Q ss_pred CcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCC
Q 045649 573 NQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIP 628 (725)
Q Consensus 573 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 628 (725)
|++++..+..|.++++|++|+|++|++++.+|..+..+++|++|++++|++++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88888777778888888888888888888888888888888888888888887654
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=8.4e-18 Score=174.84 Aligned_cols=222 Identities=11% Similarity=-0.003 Sum_probs=144.7
Q ss_pred CCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCcc----ccccCccccCCCCC
Q 045649 394 LTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNF----YGEISFNWRNFPKL 469 (725)
Q Consensus 394 l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l----~~~~~~~~~~~~~L 469 (725)
+++|+.+++.+ .+....+.+|.+|++|+.+++.+|.+....+.+|..+.++..+....+.. .......|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 55555555555 44444445566666666666666666655556666655555555544221 12223445566666
Q ss_pred c-EEeCCCccc-cCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEcc
Q 045649 470 C-TFNASMNNI-YGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLS 547 (725)
Q Consensus 470 ~-~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 547 (725)
+ .+.+..... ...+...-....+++.+.+.++-...........|++|+.+++++|+++...+..|.++++|+.++++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 5 343332111 00001111234455666665442221111112237889999999988886667788999999999999
Q ss_pred CCcccccchhhhhcccCCC-eeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeC
Q 045649 548 ANKLRSWIPKSIANLLKLY-YLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNL 618 (725)
Q Consensus 548 ~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 618 (725)
+| +..+.+.+|.+|++|+ .+++++ +++.+.+..|.++++|+.+++++|+++...+..|.++++|+.++.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 87 8887888899999999 999988 777777788999999999999999999888889999999998874
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=7e-17 Score=153.48 Aligned_cols=132 Identities=27% Similarity=0.322 Sum_probs=115.0
Q ss_pred CeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCC
Q 045649 518 TKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYN 597 (725)
Q Consensus 518 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 597 (725)
+.+++++|.++ .+|..+. ++|++|++++|.++. +|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56777777777 5565443 578999999999985 6688999999999999999999888888999999999999999
Q ss_pred CCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCC
Q 045649 598 FLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN 653 (725)
Q Consensus 598 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 653 (725)
++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++.+.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 99999998999999999999999999987777899999999999999999987653
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=2e-16 Score=146.99 Aligned_cols=130 Identities=25% Similarity=0.294 Sum_probs=58.0
Q ss_pred CCeeeCCCCcCC-CCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCC
Q 045649 517 LTKLILNSNQLS-GGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLS 595 (725)
Q Consensus 517 L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 595 (725)
|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 333444444333 23333333444444444444444432 334444444444444444444344444444444444444
Q ss_pred CCCCCccCC-ccccCCCCCCEEeCCCCcccccCC---ccccCCCCCCeeeCcCCccc
Q 045649 596 YNFLDEEMP-FQICNMKSLEKLNLCHNNLSGFIP---RCFEGMHNLSHIDISYNELQ 648 (725)
Q Consensus 596 ~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~ls~N~l~ 648 (725)
+|++++..+ ..+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+.
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 444444321 344455555555555555554333 24455555555555555543
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=2e-16 Score=147.09 Aligned_cols=139 Identities=22% Similarity=0.140 Sum_probs=124.6
Q ss_pred CCCCCcEEeCCCCeee-ecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCe
Q 045649 489 DLSKLQVLDLSSNHIV-GEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYY 567 (725)
Q Consensus 489 ~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 567 (725)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3478999999999998 78888899999999999999999866 78899999999999999999988888888999999
Q ss_pred eeCcCCcCCcCC-chhhhcCCCCCEEeCCCCCCCccCC---ccccCCCCCCEEeCCCCcccccCCcc
Q 045649 568 LNLSNNQFSQKI-PIEVEKLIHLSELDLSYNFLDEEMP---FQICNMKSLEKLNLCHNNLSGFIPRC 630 (725)
Q Consensus 568 L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~L~~N~l~~~~p~~ 630 (725)
|++++|++++.. +..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+. .+|+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 999999998643 3789999999999999999988776 58899999999999999987 44443
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=1.5e-16 Score=144.64 Aligned_cols=127 Identities=22% Similarity=0.293 Sum_probs=77.4
Q ss_pred CCCCeeeCCCCcCC-CCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEe
Q 045649 515 FSLTKLILNSNQLS-GGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELD 593 (725)
Q Consensus 515 ~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 593 (725)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555555 44555555556666666666666554 4555666666666666666655666666666666666
Q ss_pred CCCCCCCcc-CCccccCCCCCCEEeCCCCcccccCC---ccccCCCCCCeeeCc
Q 045649 594 LSYNFLDEE-MPFQICNMKSLEKLNLCHNNLSGFIP---RCFEGMHNLSHIDIS 643 (725)
Q Consensus 594 Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~ls 643 (725)
+++|++++. .+..++.+++|++|++++|++++..+ ..+..+++|++||++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666553 23556666667777777776665554 456666777777665
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=5.9e-16 Score=145.21 Aligned_cols=134 Identities=25% Similarity=0.249 Sum_probs=111.0
Q ss_pred CCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCC
Q 045649 517 LTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSY 596 (725)
Q Consensus 517 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 596 (725)
.+.++++++.+. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 466777777776 344333 36788888888888887777788888899999999998877777788899999999999
Q ss_pred CCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCCC
Q 045649 597 NFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN 653 (725)
Q Consensus 597 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 653 (725)
|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.|.+|.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 999888888888999999999999999977777788899999999999999988774
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=3e-16 Score=142.65 Aligned_cols=128 Identities=21% Similarity=0.144 Sum_probs=101.4
Q ss_pred CCCcEEeCCCCeee-ecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeee
Q 045649 491 SKLQVLDLSSNHIV-GEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLN 569 (725)
Q Consensus 491 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 569 (725)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56777777777776 56677777777888888888877755 5677888888888888888887787777888888888
Q ss_pred CcCCcCCcC-CchhhhcCCCCCEEeCCCCCCCccCC---ccccCCCCCCEEeCCC
Q 045649 570 LSNNQFSQK-IPIEVEKLIHLSELDLSYNFLDEEMP---FQICNMKSLEKLNLCH 620 (725)
Q Consensus 570 Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~L~~ 620 (725)
+++|++++. .+..++.+++|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888888763 34778888888888888888887766 5788888888888764
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=7.3e-15 Score=155.84 Aligned_cols=217 Identities=11% Similarity=0.101 Sum_probs=114.2
Q ss_pred CcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCC
Q 045649 421 LERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSS 500 (725)
Q Consensus 421 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 500 (725)
|+.+.+.. .++.....+|.++++|+.+++++|+++......|. +.+|+.+.+.++ +.......|.++++|+.+++..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 44444443 33434444445555555555555444443333343 344555555422 3333334455555555555544
Q ss_pred CeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCccc-----ccchhhhhcccCCCeeeCcCCcC
Q 045649 501 NHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLR-----SWIPKSIANLLKLYYLNLSNNQF 575 (725)
Q Consensus 501 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l 575 (725)
+ ++......|.+ .+|+.+.+. +.+.......|.+|++|+.+++.+|.+. .+.+.+|.+|++|+.+++. +.+
T Consensus 236 ~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i 311 (401)
T 4fdw_A 236 N-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESI 311 (401)
T ss_dssp T-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTC
T ss_pred C-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cce
Confidence 3 33333344444 455555552 2333333445555666666666555443 3445566666666666666 335
Q ss_pred CcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCC-CCCeeeCcCCc
Q 045649 576 SQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMH-NLSHIDISYNE 646 (725)
Q Consensus 576 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~ls~N~ 646 (725)
...-...|.++++|+.++|..| ++...+.+|.++ +|+.+++++|.+....+..|.+++ .++.+.+..+.
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 5455556666666666666443 555555666666 677777776666655556666653 45666655544
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=1.3e-14 Score=153.87 Aligned_cols=242 Identities=10% Similarity=0.025 Sum_probs=163.3
Q ss_pred cccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECc
Q 045649 372 SIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFS 451 (725)
Q Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls 451 (725)
+|+.+++..+ ++..-..+|.++ +|+.+.+.. .+....+.+|.+|++|+.+++..|.++.....+|. +.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 3444444333 332333334442 355555543 33333445566666666666666666655555555 4667777776
Q ss_pred CCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCC---
Q 045649 452 QNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLS--- 528 (725)
Q Consensus 452 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--- 528 (725)
++ ++.....+|.+|++|+.+++..+ ++..-...|.+ .+|+.+++. +.++......|.+|++|+.+++.+|.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 33 55555666777777777777653 33333445655 678888884 4455566777888888888888877654
Q ss_pred --CCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCcc
Q 045649 529 --GGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQ 606 (725)
Q Consensus 529 --~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 606 (725)
...+..|.+|++|+.+++. +.++.+...+|.+|++|+.++|..+ ++..-+.+|.++ +|+.+++++|.+....+..
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~ 364 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKV 364 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSS
T ss_pred ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccc
Confidence 3445678889999999998 4577777888999999999999665 666667889999 9999999999888877788
Q ss_pred ccCCC-CCCEEeCCCCccc
Q 045649 607 ICNMK-SLEKLNLCHNNLS 624 (725)
Q Consensus 607 l~~l~-~L~~L~L~~N~l~ 624 (725)
|.+++ .++.|++..+.+.
T Consensus 365 F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 365 WYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CCCSCTTCCEEEECGGGHH
T ss_pred ccCCCCCccEEEeCHHHHH
Confidence 88874 7888988877654
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.62 E-value=2.3e-14 Score=152.81 Aligned_cols=101 Identities=11% Similarity=0.061 Sum_probs=50.1
Q ss_pred ccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCC
Q 045649 439 FGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLT 518 (725)
Q Consensus 439 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 518 (725)
|..+.+|+.+.+.++ ++.....+|.+|.+|+.+++.++ ++..-..+|.+|.+|+.+++..+ ++.....+|.+|++|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 344444444444432 33333444555555555555432 33233345555666666666544 4444455666666666
Q ss_pred eeeCCCCcCCCCCCcccCCCCCCcEE
Q 045649 519 KLILNSNQLSGGIPLELGSLTELQYI 544 (725)
Q Consensus 519 ~L~Ls~n~l~~~~~~~l~~l~~L~~L 544 (725)
.+++..+ +. .+...|.++++|+.+
T Consensus 370 ~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 370 KVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EEEECCC-CE-EhhheecCCCCCcEE
Confidence 6666543 11 223455666666543
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=3.1e-15 Score=142.06 Aligned_cols=128 Identities=27% Similarity=0.309 Sum_probs=105.6
Q ss_pred cEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCC
Q 045649 494 QVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNN 573 (725)
Q Consensus 494 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 573 (725)
+.+++++|.++ .+|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45677777765 4454432 47888888888887 66778888888888999988888887788888899999999999
Q ss_pred cCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccc
Q 045649 574 QFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSG 625 (725)
Q Consensus 574 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 625 (725)
++++..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9988888889999999999999999988777788889999999999998874
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=4.4e-15 Score=139.22 Aligned_cols=133 Identities=27% Similarity=0.236 Sum_probs=108.1
Q ss_pred CcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcC
Q 045649 493 LQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSN 572 (725)
Q Consensus 493 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 572 (725)
.+.++++++.++ .+|..+ .++|+.|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 356677777665 334333 25788888888888876666778888999999999998887777788899999999999
Q ss_pred CcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCC
Q 045649 573 NQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIP 628 (725)
Q Consensus 573 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 628 (725)
|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99988777778899999999999999988777778889999999999999987654
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=3.1e-14 Score=151.79 Aligned_cols=316 Identities=12% Similarity=0.035 Sum_probs=154.6
Q ss_pred CCccCCccccCCCCCCEEEccCCcCCCCCCcccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchh
Q 045649 287 LSGSIPLSLGNLSSLTVMSLFSNSLSGFIPPILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEE 366 (725)
Q Consensus 287 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 366 (725)
++.....+|.++++|+.+.+.. .++.....+|.+|++|+.+++..+ ++......|.++.+|+.+.+..+ +.......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 3334445778888888888864 355555667888888888888644 44444566777777777766544 33333344
Q ss_pred hccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCC
Q 045649 367 IGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLT 446 (725)
Q Consensus 367 l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 446 (725)
|..+..+........ ......+|.++++|+.+.+.++. .......|.+|.+|+.+.+..+ ++.....+|..+..|+
T Consensus 136 F~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 136 FKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE 211 (394)
T ss_dssp TTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred eecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence 444433222221111 11222345555555555554332 1222334455555555555433 3333333444444444
Q ss_pred EEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCc
Q 045649 447 FLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQ 526 (725)
Q Consensus 447 ~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 526 (725)
.+.+.++... +. ..+....+|+.+.+... ++......+..+..|+.+.+..+.
T Consensus 212 ~i~~~~~~~~--i~------------------------~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~ 264 (394)
T 4fs7_A 212 NMEFPNSLYY--LG------------------------DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK 264 (394)
T ss_dssp BCCCCTTCCE--EC------------------------TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT
T ss_pred eeecCCCceE--ee------------------------hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc
Confidence 4444333211 11 12222344444444332 122233344455555555554443
Q ss_pred CCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCcc
Q 045649 527 LSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQ 606 (725)
Q Consensus 527 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 606 (725)
.. .....+..+..++.+....+.+. ...|.++.+|+.+.+..+ +...-..+|.++++|+.++|..+ ++.....+
T Consensus 265 ~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 338 (394)
T 4fs7_A 265 LR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRS 338 (394)
T ss_dssp CE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred ce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHh
Confidence 22 33334445555555554443321 234555555555555443 33333445555555555555432 44444455
Q ss_pred ccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCc
Q 045649 607 ICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDIS 643 (725)
Q Consensus 607 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls 643 (725)
|.++++|+.+++..+ ++..-..+|.++++|+.+++.
T Consensus 339 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 339 FRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred ccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 555555555555544 443444555555555555553
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=6.4e-15 Score=137.92 Aligned_cols=134 Identities=22% Similarity=0.186 Sum_probs=90.5
Q ss_pred ccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCC
Q 045649 511 LGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLS 590 (725)
Q Consensus 511 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 590 (725)
+.++++|+.|++++|.+.. ++......++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4455666666666666663 343222233777777777777664 4667777777777777777765455557777788
Q ss_pred EEeCCCCCCCccCCc--cccCCCCCCEEeCCCCcccccCCcc----ccCCCCCCeeeCcCCcccc
Q 045649 591 ELDLSYNFLDEEMPF--QICNMKSLEKLNLCHNNLSGFIPRC----FEGMHNLSHIDISYNELQG 649 (725)
Q Consensus 591 ~L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~ls~N~l~g 649 (725)
+|++++|+++. +|. .+..+++|+.|++++|+++ .+|.. +..+++|++||+++|....
T Consensus 92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 88888887744 343 6777788888888888887 34543 7778888888888887653
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=6.8e-17 Score=154.62 Aligned_cols=132 Identities=25% Similarity=0.278 Sum_probs=86.3
Q ss_pred cccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCC
Q 045649 510 QLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHL 589 (725)
Q Consensus 510 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 589 (725)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++. +|..+..+++|++|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 55666666666666666664 44 56666667777777776664 45566666677777777777764 33 56667777
Q ss_pred CEEeCCCCCCCccCC-ccccCCCCCCEEeCCCCcccccCCcc----------ccCCCCCCeeeCcCCccc
Q 045649 590 SELDLSYNFLDEEMP-FQICNMKSLEKLNLCHNNLSGFIPRC----------FEGMHNLSHIDISYNELQ 648 (725)
Q Consensus 590 ~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~ 648 (725)
++|++++|++++..+ ..+..+++|++|++++|++.+.+|.. +..+++|++|| +|+++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 777777777765433 45667777777777777776665542 66777777776 55554
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.2e-14 Score=136.14 Aligned_cols=135 Identities=17% Similarity=0.114 Sum_probs=97.9
Q ss_pred cCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCC
Q 045649 487 IGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLY 566 (725)
Q Consensus 487 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 566 (725)
+..+++|++|++++|+++. ++......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4455667777777777763 343222233788888888877754 5677788888888888888876556668888888
Q ss_pred eeeCcCCcCCcCCch--hhhcCCCCCEEeCCCCCCCccCCc---cccCCCCCCEEeCCCCcccc
Q 045649 567 YLNLSNNQFSQKIPI--EVEKLIHLSELDLSYNFLDEEMPF---QICNMKSLEKLNLCHNNLSG 625 (725)
Q Consensus 567 ~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~L~~N~l~~ 625 (725)
+|++++|++. .+|. .+..+++|++|++++|+++...+. .+..+++|+.||+++|....
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 8888888885 4555 788888888888888888654332 47888888888888887753
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=3.7e-14 Score=131.61 Aligned_cols=110 Identities=25% Similarity=0.298 Sum_probs=80.8
Q ss_pred CcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCC
Q 045649 541 LQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCH 620 (725)
Q Consensus 541 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 620 (725)
.+.+++++|.++. +|..+ .++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3556666666655 34333 25677777777777777777777777888888888888777777777888888888888
Q ss_pred CcccccCCccccCCCCCCeeeCcCCcccccCCC
Q 045649 621 NNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN 653 (725)
Q Consensus 621 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 653 (725)
|++++..+..|..+++|++|++++|++.+.++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 888877677788888888888888888877653
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1.4e-16 Score=152.33 Aligned_cols=151 Identities=25% Similarity=0.260 Sum_probs=113.7
Q ss_pred CCCcEEeCCCccccCCCCc------ccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCC
Q 045649 467 PKLCTFNASMNNIYGSIPT------EIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTE 540 (725)
Q Consensus 467 ~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 540 (725)
..++.++++.+.+++.+|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3344444444444444443 67777888888888888875 55 7778888888888888887 56767777788
Q ss_pred CcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCc-hhhhcCCCCCEEeCCCCCCCccCCcc----------ccC
Q 045649 541 LQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIP-IEVEKLIHLSELDLSYNFLDEEMPFQ----------ICN 609 (725)
Q Consensus 541 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~ 609 (725)
|++|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|++++.+|.. +..
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 9999999998887 44 68888899999999999875332 47888999999999999987776653 788
Q ss_pred CCCCCEEeCCCCccc
Q 045649 610 MKSLEKLNLCHNNLS 624 (725)
Q Consensus 610 l~~L~~L~L~~N~l~ 624 (725)
+++|+.|| +|.++
T Consensus 173 l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 173 LPNLKKLD--GMPVD 185 (198)
T ss_dssp CSSCSEEC--CGGGT
T ss_pred CCCcEEEC--CcccC
Confidence 89999887 66665
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=1.4e-13 Score=128.24 Aligned_cols=108 Identities=23% Similarity=0.293 Sum_probs=72.7
Q ss_pred cEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCC
Q 045649 542 QYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHN 621 (725)
Q Consensus 542 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 621 (725)
+.+++++|.++. +|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 455666665544 343332 56666777777776666666777777777777777777666666677777777777777
Q ss_pred cccccCCccccCCCCCCeeeCcCCcccccCC
Q 045649 622 NLSGFIPRCFEGMHNLSHIDISYNELQGPIP 652 (725)
Q Consensus 622 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 652 (725)
++++..+..|..+++|++|++++|++.+..+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 7776655567777777777777777776554
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=3e-13 Score=125.42 Aligned_cols=108 Identities=26% Similarity=0.242 Sum_probs=90.9
Q ss_pred CCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCC
Q 045649 517 LTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSY 596 (725)
Q Consensus 517 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 596 (725)
.+.+++++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 567788888877 4565553 7888899999999888888888899999999999999877777788999999999999
Q ss_pred CCCCccCCccccCCCCCCEEeCCCCcccccC
Q 045649 597 NFLDEEMPFQICNMKSLEKLNLCHNNLSGFI 627 (725)
Q Consensus 597 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 627 (725)
|++++..+..|..+++|++|+|++|++....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9998888888899999999999999988553
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.43 E-value=2e-11 Score=130.00 Aligned_cols=333 Identities=9% Similarity=0.069 Sum_probs=161.2
Q ss_pred cCCccccCCC-CCCEEECcCccCCccCCccccCCCCCCEEEccCCc---CCCCCCcccccCCCCCcccccCccCCCcCcc
Q 045649 266 HIPSVIGNLK-SLLQLDLSENQLSGSIPLSLGNLSSLTVMSLFSNS---LSGFIPPILGNLKSLSALGLHINQLNGVIPA 341 (725)
Q Consensus 266 ~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 341 (725)
....+|.+++ .|+.+.+..+ ++..-..+|.++++|+.+.+..+. ++.....+|.+|.+|+.+.+..+ ++.....
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 3345566663 4777777643 444445567777777777776543 33333445556666665555432 2223334
Q ss_pred ccCCCcccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCCcEEeCCCCcccCcCCccccCCCCC
Q 045649 342 SIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTELVLVNICENHFFGPIPKSLRNLTSL 421 (725)
Q Consensus 342 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L 421 (725)
.|..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++..-..+|. ..+|
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-------------------------~~~l 184 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-------------------------GTAL 184 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-------------------------TCCC
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-------------------------ccce
Confidence 4455555555555432 22222233444444554444332 1111111221 1233
Q ss_pred cEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCC
Q 045649 422 ERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSN 501 (725)
Q Consensus 422 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 501 (725)
+.+.+..+ +......+|..+..++................+......... ...+.....+..+.+..
T Consensus 185 ~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ip~- 251 (394)
T 4gt6_A 185 TQIHIPAK-VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYA-----------LIRYPSQREDPAFKIPN- 251 (394)
T ss_dssp SEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEE-----------EEECCTTCCCSEEECCT-
T ss_pred eEEEECCc-ccccccchhhhccccceecccccccccccceeeccccccccc-----------ccccccccccceEEcCC-
Confidence 44433322 111222333333444433333222111000000000000000 00111222333344432
Q ss_pred eeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCch
Q 045649 502 HIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPI 581 (725)
Q Consensus 502 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 581 (725)
.++......|.+|..|+.+.+.++... .....|.+++.|+.+.+. +.++.+...+|.+|.+|+.++|..+ ++..-..
T Consensus 252 ~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 252 GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHh
Confidence 233344556667777777777654332 344556677777777775 3455555667777777887777654 5545556
Q ss_pred hhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcc
Q 045649 582 EVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL 647 (725)
Q Consensus 582 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 647 (725)
+|.++.+|+.+.+..+ ++.....+|.++++|+.+++.++.... ..+..+.+|+.+.+..|.+
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 7777788888877644 666666777888888888887775432 3566677777777665543
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=8.2e-13 Score=122.92 Aligned_cols=106 Identities=25% Similarity=0.271 Sum_probs=86.4
Q ss_pred CeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCC
Q 045649 518 TKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYN 597 (725)
Q Consensus 518 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 597 (725)
+.+++++|.+. .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777775 5565554 77888888888888877888888888888888888888766667788899999999999
Q ss_pred CCCccCCccccCCCCCCEEeCCCCccccc
Q 045649 598 FLDEEMPFQICNMKSLEKLNLCHNNLSGF 626 (725)
Q Consensus 598 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 626 (725)
++++..+..|..+++|+.|++++|++...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 99887777788899999999999988844
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.40 E-value=3.9e-11 Score=127.72 Aligned_cols=109 Identities=8% Similarity=0.033 Sum_probs=56.9
Q ss_pred CccCcCCC-CCCEEEccCCcCCcCCCcccCCCCCCCEEEccccc---cCCCCccccCCCCCCCEEEecCCCCCccCcccc
Q 045649 148 PQEIGHLN-QLRSLYFDVNQLHGSIPPEIGQLNLINELALCHNN---LHGPIPPSLGNLSNLANFYLNNNSLFDSIPLVL 223 (725)
Q Consensus 148 p~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~---l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l 223 (725)
..+|.++. .|+.+.+..+ ++.+...+|.+|++|+.+.+..+. ++.....+|.++.+|+.+.+..+ +......+|
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 44666664 5777777654 554556667777777777776553 33233345555555555544432 223333344
Q ss_pred CCCCCCCEEEcccCcCcccCCcCccCCCCCceEEee
Q 045649 224 GNLKSLSTLDLSKNQLSGLIPFSLGNLSNLGILYLY 259 (725)
Q Consensus 224 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 259 (725)
..+.+|+.+.+..+ +.......+..+.+|+.+.+.
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred hhhcccccccccce-eeeecccceeccccccccccc
Confidence 55555555555432 222333344444445444443
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=9.7e-14 Score=145.77 Aligned_cols=159 Identities=21% Similarity=0.215 Sum_probs=67.4
Q ss_pred CCCcEEeCCCccccCCCCcc----cC-CCCCCcEEeCCCCeeeecccccc-cCCCCCCeeeCCCCcCCCCCCccc-----
Q 045649 467 PKLCTFNASMNNIYGSIPTE----IG-DLSKLQVLDLSSNHIVGEIPVQL-GKLFSLTKLILNSNQLSGGIPLEL----- 535 (725)
Q Consensus 467 ~~L~~L~l~~n~l~~~~~~~----~~-~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~l----- 535 (725)
+.|+.|++++|.++...... +. ..++|++|+|++|.++......+ ..+++|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45556666666554322211 11 12455555555555543222221 123345555555555442221111
Q ss_pred CCCCCCcEEEccCCccccc----chhhhhcccCCCeeeCcCCcCCcC----CchhhhcCCCCCEEeCCCCCCCcc----C
Q 045649 536 GSLTELQYIDLSANKLRSW----IPKSIANLLKLYYLNLSNNQFSQK----IPIEVEKLIHLSELDLSYNFLDEE----M 603 (725)
Q Consensus 536 ~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~ 603 (725)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.+.+. ++..+...++|++|+|++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 1234455555555554331 122233444455555555554321 123334444455555555554432 1
Q ss_pred CccccCCCCCCEEeCCCCcccc
Q 045649 604 PFQICNMKSLEKLNLCHNNLSG 625 (725)
Q Consensus 604 p~~l~~l~~L~~L~L~~N~l~~ 625 (725)
...+...++|++|||++|.++.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 2222333445555555554443
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=8.6e-14 Score=146.17 Aligned_cols=165 Identities=17% Similarity=0.079 Sum_probs=95.0
Q ss_pred CCCCEEECcCCccccccCcccc-----CCCCCcEEeCCCccccCCCCccc-CCCCCCcEEeCCCCeeeecccccc-----
Q 045649 443 PNLTFLDFSQNNFYGEISFNWR-----NFPKLCTFNASMNNIYGSIPTEI-GDLSKLQVLDLSSNHIVGEIPVQL----- 511 (725)
Q Consensus 443 ~~L~~L~ls~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~----- 511 (725)
+.|+.|++++|.++......+. ..++|+.|++++|.++......+ ..+++|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4567777777776543322221 23567777777776654322222 234567777777777654433332
Q ss_pred cCCCCCCeeeCCCCcCCCC----CCcccCCCCCCcEEEccCCcccccc----hhhhhcccCCCeeeCcCCcCCcC----C
Q 045649 512 GKLFSLTKLILNSNQLSGG----IPLELGSLTELQYIDLSANKLRSWI----PKSIANLLKLYYLNLSNNQFSQK----I 579 (725)
Q Consensus 512 ~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~ 579 (725)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.+++.. +..+...++|++|+|++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2356677777777766531 2233355667777777777765432 34555666777777777777542 2
Q ss_pred chhhhcCCCCCEEeCCCCCCCccCCccc
Q 045649 580 PIEVEKLIHLSELDLSYNFLDEEMPFQI 607 (725)
Q Consensus 580 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 607 (725)
+..+...++|++|||++|.+++.....+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 3344456677777777777765444433
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=7.2e-12 Score=131.05 Aligned_cols=104 Identities=20% Similarity=0.201 Sum_probs=72.8
Q ss_pred eeeCCCC-cCCCCCCcccCCCCCCcEEEccC-CcccccchhhhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCC
Q 045649 519 KLILNSN-QLSGGIPLELGSLTELQYIDLSA-NKLRSWIPKSIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSY 596 (725)
Q Consensus 519 ~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 596 (725)
.++.+++ .++ .+|. +..+++|++|+|++ |.++++.+..|.++++|++|+|++|++++..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 666 4566 77777777777775 777776666777777777777777777777777777777777777777
Q ss_pred CCCCccCCccccCCCCCCEEeCCCCcccc
Q 045649 597 NFLDEEMPFQICNMKSLEKLNLCHNNLSG 625 (725)
Q Consensus 597 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 625 (725)
|+|++.++..+..++ |+.|+|.+|++..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 777766665555554 7777777777663
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=1.4e-11 Score=128.93 Aligned_cols=104 Identities=27% Similarity=0.196 Sum_probs=78.6
Q ss_pred EEeCCCC-eeeecccccccCCCCCCeeeCCC-CcCCCCCCcccCCCCCCcEEEccCCcccccchhhhhcccCCCeeeCcC
Q 045649 495 VLDLSSN-HIVGEIPVQLGKLFSLTKLILNS-NQLSGGIPLELGSLTELQYIDLSANKLRSWIPKSIANLLKLYYLNLSN 572 (725)
Q Consensus 495 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 572 (725)
.++++++ .++ .+|. +..+++|+.|+|++ |.+.+..+..|..+++|++|+|++|+|+++.|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 666 4666 77777888888875 788776667778888888888888888887777788888888888888
Q ss_pred CcCCcCCchhhhcCCCCCEEeCCCCCCCc
Q 045649 573 NQFSQKIPIEVEKLIHLSELDLSYNFLDE 601 (725)
Q Consensus 573 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 601 (725)
|++++..+..|..++ |+.|+|.+|++..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 888766666666655 8888888887764
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.15 E-value=4.7e-09 Score=111.00 Aligned_cols=301 Identities=11% Similarity=-0.002 Sum_probs=148.1
Q ss_pred ccccCCCCCcccccCccCCCcCccccCCCcccceeecccCccccccchhhccCCcccEEecccCccCccCCccCcCCCCC
Q 045649 318 ILGNLKSLSALGLHINQLNGVIPASIGNLSSLRLLYLYNNGLYGFVPEEIGYLKSIFELDLCTNRLSGAIPHSISNLTEL 397 (725)
Q Consensus 318 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L 397 (725)
++....+|+.+.+.. .++.+-..+|.++.+|+.+.+..+ ++......|..+ +|+.+.+..+ ++.....+|... +|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 455556666666653 344344456677777777777543 444444455555 4555555433 222222333332 55
Q ss_pred cEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCcEEeCCCc
Q 045649 398 VLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLCTFNASMN 477 (725)
Q Consensus 398 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n 477 (725)
+.+.+..+- .......|.++ +++.+.+..+ ++......|..+..++.+.+..+........... .
T Consensus 116 ~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~------------~ 180 (379)
T 4h09_A 116 DDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL------------Y 180 (379)
T ss_dssp SEEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE------------E
T ss_pred ccccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee------------c
Confidence 666554431 11122233333 3444443322 2333334444455555554443321110000000 0
Q ss_pred cccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCcccccchh
Q 045649 478 NIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLTELQYIDLSANKLRSWIPK 557 (725)
Q Consensus 478 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 557 (725)
.........+.....+..+.+....- ......+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++.+...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~ 257 (379)
T 4h09_A 181 NKNKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSF 257 (379)
T ss_dssp ETTSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTT
T ss_pred ccccceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcc
Confidence 00001112233334444444433221 233344555566666666543 22233445556666666666554 4444556
Q ss_pred hhhcccCCCeeeCcCCcCCcCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCcccccCCccccCCCCC
Q 045649 558 SIANLLKLYYLNLSNNQFSQKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNL 637 (725)
Q Consensus 558 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 637 (725)
+|.++.+|+.+++..+ +.......|.++++|+.+++.++.++...+..|.++++|+.++|..+ ++.+-..+|.++++|
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 6666666766666543 44344455666677777777666666666666777777777777544 444445567777777
Q ss_pred CeeeCc
Q 045649 638 SHIDIS 643 (725)
Q Consensus 638 ~~L~ls 643 (725)
+.+.+.
T Consensus 336 ~~i~ip 341 (379)
T 4h09_A 336 STISYP 341 (379)
T ss_dssp CCCCCC
T ss_pred CEEEEC
Confidence 766654
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.15 E-value=6e-09 Score=110.16 Aligned_cols=144 Identities=11% Similarity=0.022 Sum_probs=79.8
Q ss_pred CcCCCCCcEEeCCCCcccCcCCccccCCCCCcEEEccCCcCcccccccccCCCCCCEEECcCCccccccCccccCCCCCc
Q 045649 391 ISNLTELVLVNICENHFFGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDFSQNNFYGEISFNWRNFPKLC 470 (725)
Q Consensus 391 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~ 470 (725)
+.....++.+.+..+ +.......+.++..|+.+.+..+ ++.....+|..+.+|+.+.+..+ +.......|.+|++|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 334444444444332 22222344555566666665443 44444455556666666666433 4444445566667777
Q ss_pred EEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeecccccccCCCCCCeeeCCCCcCCCCCCcccCCCC
Q 045649 471 TFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLGKLFSLTKLILNSNQLSGGIPLELGSLT 539 (725)
Q Consensus 471 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 539 (725)
.+.+.++.++..-...|.++.+|+.+++..+ ++.+...+|.+|++|+.+.+..+ ++..-..+|.++.
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 7766666555445556777777777777544 44455566777777777777554 3333344555553
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=1.3e-09 Score=113.25 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=29.0
Q ss_pred ccCCCCCcEEeCCCccccCCCCcccCCCCCCcEEeCCCCeeeeccccccc--CCCCCCeeeCC
Q 045649 463 WRNFPKLCTFNASMNNIYGSIPTEIGDLSKLQVLDLSSNHIVGEIPVQLG--KLFSLTKLILN 523 (725)
Q Consensus 463 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls 523 (725)
+..+|+|+.|++++|.-. .++. + .+++|+.|++..|.+.......+. .+++|+.|+|+
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 344556666666554211 1121 2 256666666666665433322332 45666666664
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.84 E-value=9e-10 Score=114.44 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=18.9
Q ss_pred CCCCCEEECcCccCCcc----CCccccCCCCCCEEEccCCcCC
Q 045649 274 LKSLLQLDLSENQLSGS----IPLSLGNLSSLTVMSLFSNSLS 312 (725)
Q Consensus 274 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~ 312 (725)
+++|++|+|+.|.+++. ++..+..+++|+.|+++.|.++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 44555555555555432 1222233455555555555554
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.71 E-value=3.8e-11 Score=118.14 Aligned_cols=66 Identities=24% Similarity=0.380 Sum_probs=35.3
Q ss_pred cCCCCCCEEEccCCcCCc--CCCcccCCCCCCCEEEccccccCCCCccccCCCC--CCCEEEecCCCCCccC
Q 045649 152 GHLNQLRSLYFDVNQLHG--SIPPEIGQLNLINELALCHNNLHGPIPPSLGNLS--NLANFYLNNNSLFDSI 219 (725)
Q Consensus 152 ~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~ 219 (725)
.++++|++|+|++|.+++ .+|..+..+++|++|+|++|.+++. ..+..+. +|++|+|++|.+.+.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 345666666666666655 3344445566666666666666543 1222222 5555555555555433
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=2.2e-08 Score=93.73 Aligned_cols=92 Identities=15% Similarity=0.069 Sum_probs=44.6
Q ss_pred ccccCCCCCCeeeCCCC-cCCCC----CCcccCCCCCCcEEEccCCcccccc----hhhhhcccCCCeeeCcCCcCCcC-
Q 045649 509 VQLGKLFSLTKLILNSN-QLSGG----IPLELGSLTELQYIDLSANKLRSWI----PKSIANLLKLYYLNLSNNQFSQK- 578 (725)
Q Consensus 509 ~~~~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~- 578 (725)
..+...++|++|+|++| .+... +...+...++|++|+|++|.+.... ...+...++|++|+|++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34455666666666666 55421 1223344555666666666554321 22333344555555555555432
Q ss_pred ---CchhhhcCCCCCEEeC--CCCCCC
Q 045649 579 ---IPIEVEKLIHLSELDL--SYNFLD 600 (725)
Q Consensus 579 ---~p~~~~~l~~L~~L~L--s~N~l~ 600 (725)
+...+...++|++|+| ++|.++
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 2233344444555555 445444
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.56 E-value=2.5e-08 Score=98.04 Aligned_cols=96 Identities=31% Similarity=0.311 Sum_probs=64.3
Q ss_pred EEccCCcc---cccchhhhhcccCCCeeeCcCCcCCc--CCchhhhcCCCCCEEeCCCCCCCccCCccccCCC--CCCEE
Q 045649 544 IDLSANKL---RSWIPKSIANLLKLYYLNLSNNQFSQ--KIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMK--SLEKL 616 (725)
Q Consensus 544 L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L 616 (725)
++++.|+. ....+....++++|++|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..++ +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 55566632 22222333567788888888888877 4456677888888888888888765 2233344 78888
Q ss_pred eCCCCcccccCCc-------cccCCCCCCeee
Q 045649 617 NLCHNNLSGFIPR-------CFEGMHNLSHID 641 (725)
Q Consensus 617 ~L~~N~l~~~~p~-------~l~~l~~L~~L~ 641 (725)
+|++|.+.+.+|+ .+..+++|+.||
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 8888888776652 356677787775
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=3.6e-08 Score=92.28 Aligned_cols=114 Identities=11% Similarity=0.132 Sum_probs=64.9
Q ss_pred cCCCCCCcEEEccCC-ccccc----chhhhhcccCCCeeeCcCCcCCcC----CchhhhcCCCCCEEeCCCCCCCcc---
Q 045649 535 LGSLTELQYIDLSAN-KLRSW----IPKSIANLLKLYYLNLSNNQFSQK----IPIEVEKLIHLSELDLSYNFLDEE--- 602 (725)
Q Consensus 535 l~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~--- 602 (725)
+...++|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.++..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 445566666777666 65442 223344456666777777666432 233344456666777777666543
Q ss_pred -CCccccCCCCCCEEeC--CCCccccc----CCccccCCCCCCeeeCcCCccc
Q 045649 603 -MPFQICNMKSLEKLNL--CHNNLSGF----IPRCFEGMHNLSHIDISYNELQ 648 (725)
Q Consensus 603 -~p~~l~~l~~L~~L~L--~~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~ 648 (725)
+...+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2344555566677777 66666543 2334444566677777666653
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=1.9e-06 Score=78.40 Aligned_cols=83 Identities=13% Similarity=0.113 Sum_probs=38.3
Q ss_pred CCcEEEccCCcccccchhhhhcccCCCeeeCcCCc-CCcCCchhhhcC----CCCCEEeCCCCC-CCccCCccccCCCCC
Q 045649 540 ELQYIDLSANKLRSWIPKSIANLLKLYYLNLSNNQ-FSQKIPIEVEKL----IHLSELDLSYNF-LDEEMPFQICNMKSL 613 (725)
Q Consensus 540 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L 613 (725)
.|+.||+++|.++...-..+.++++|++|+|++|. ++..--..+..+ ++|++|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34555555555444333344445555555555553 333222223332 245555555553 444333344455555
Q ss_pred CEEeCCCCc
Q 045649 614 EKLNLCHNN 622 (725)
Q Consensus 614 ~~L~L~~N~ 622 (725)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555553
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=3.2e-06 Score=76.81 Aligned_cols=82 Identities=12% Similarity=0.030 Sum_probs=37.3
Q ss_pred CCeeeCCCCcCCCCCCcccCCCCCCcEEEccCCc-ccccchhhhhcc----cCCCeeeCcCCc-CCcCCchhhhcCCCCC
Q 045649 517 LTKLILNSNQLSGGIPLELGSLTELQYIDLSANK-LRSWIPKSIANL----LKLYYLNLSNNQ-FSQKIPIEVEKLIHLS 590 (725)
Q Consensus 517 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~ 590 (725)
|+.||+++|.++..--..+..+++|++|+|++|. +++..-..+..+ ++|++|+|++|. ++..--..+..+++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 3444444444333222333444555555555553 443322333332 245555555553 4433333445556666
Q ss_pred EEeCCCCC
Q 045649 591 ELDLSYNF 598 (725)
Q Consensus 591 ~L~Ls~N~ 598 (725)
+|++++|.
T Consensus 143 ~L~L~~c~ 150 (176)
T 3e4g_A 143 YLFLSDLP 150 (176)
T ss_dssp EEEEESCT
T ss_pred EEECCCCC
Confidence 66666654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.45 E-value=0.0001 Score=68.20 Aligned_cols=87 Identities=20% Similarity=0.219 Sum_probs=40.5
Q ss_pred cccCCCeeeCcCCcCCc----CCchhhhcCCCCCEEeCCCCCCCcc----CCccccCCCCCCEEeCCCCc---ccc----
Q 045649 561 NLLKLYYLNLSNNQFSQ----KIPIEVEKLIHLSELDLSYNFLDEE----MPFQICNMKSLEKLNLCHNN---LSG---- 625 (725)
Q Consensus 561 ~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~---l~~---- 625 (725)
.-+.|++|+|++|.+.. .+...+..-+.|++|+|++|.|... +-+.+..-+.|++|+|++|. +..
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~ 147 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM 147 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence 33445555555554432 1222333445555555555555432 12233344556666665442 221
Q ss_pred cCCccccCCCCCCeeeCcCCcc
Q 045649 626 FIPRCFEGMHNLSHIDISYNEL 647 (725)
Q Consensus 626 ~~p~~l~~l~~L~~L~ls~N~l 647 (725)
.+.+.+..-+.|+.|+++.|..
T Consensus 148 ~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 148 DMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhCCCcCeEeccCCCc
Confidence 1333445556666666665543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.22 E-value=0.00021 Score=66.11 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=60.2
Q ss_pred CCCCCCeeeCCCC-cCCCC----CCcccCCCCCCcEEEccCCccccc----chhhhhcccCCCeeeCcCCcCCcC----C
Q 045649 513 KLFSLTKLILNSN-QLSGG----IPLELGSLTELQYIDLSANKLRSW----IPKSIANLLKLYYLNLSNNQFSQK----I 579 (725)
Q Consensus 513 ~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~ 579 (725)
+-+.|+.|+|++| .+... +.+.+..-+.|+.|+|++|.+... +.+.+..-+.|++|+|++|.|... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3345555555553 43311 122344455666666666666542 223444556677777777777542 2
Q ss_pred chhhhcCCCCCEEeCCCC---CCCcc----CCccccCCCCCCEEeCCCCcc
Q 045649 580 PIEVEKLIHLSELDLSYN---FLDEE----MPFQICNMKSLEKLNLCHNNL 623 (725)
Q Consensus 580 p~~~~~l~~L~~L~Ls~N---~l~~~----~p~~l~~l~~L~~L~L~~N~l 623 (725)
...+..-+.|++|+|++| .+... +-+.+..-+.|+.|+++.|.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 233444566777777754 33321 333445557788888877654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.05 E-value=0.001 Score=57.52 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=45.0
Q ss_pred EEeCCCCCCC-ccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeCcCCcccccCC
Q 045649 591 ELDLSYNFLD-EEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIP 652 (725)
Q Consensus 591 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 652 (725)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|++|+|++|++.+..-
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 6777777775 24554332 468888888888887777788888888899999998887553
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.60 E-value=0.0032 Score=54.31 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=33.6
Q ss_pred eeeCcCCcCC-cCCchhhhcCCCCCEEeCCCCCCCccCCccccCCCCCCEEeCCCCccc
Q 045649 567 YLNLSNNQFS-QKIPIEVEKLIHLSELDLSYNFLDEEMPFQICNMKSLEKLNLCHNNLS 624 (725)
Q Consensus 567 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 624 (725)
.++.+++.++ ..+|..+. .+|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 23443322 25666777777776666666666777777777777654
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=95.02 E-value=0.0084 Score=39.55 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=6.6
Q ss_pred HhheeEeccccccC
Q 045649 712 FKVLFQQRKDSAKQ 725 (725)
Q Consensus 712 ~~~~~~~~~~~~~~ 725 (725)
++++++||+.++||
T Consensus 31 ~~~~~RRr~~~~kR 44 (44)
T 2ks1_B 31 IGLFMRRRHIVRKR 44 (44)
T ss_dssp HHHHHHTTTCCSCC
T ss_pred HHHHhhhhHhhccC
Confidence 33444555555543
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=93.76 E-value=0.018 Score=37.87 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=5.9
Q ss_pred hheeEeccccccC
Q 045649 713 KVLFQQRKDSAKQ 725 (725)
Q Consensus 713 ~~~~~~~~~~~~~ 725 (725)
++++||||+++||
T Consensus 31 ~~~~RRRr~~~kr 43 (44)
T 2l2t_A 31 AVYVRRKSIKKKR 43 (44)
T ss_dssp HHHHHTTCSSCCC
T ss_pred HHHhhhhhhhhcc
Confidence 3444444444443
No 167
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=93.21 E-value=0.021 Score=37.46 Aligned_cols=13 Identities=15% Similarity=0.529 Sum_probs=6.2
Q ss_pred hheeEeccccccC
Q 045649 713 KVLFQQRKDSAKQ 725 (725)
Q Consensus 713 ~~~~~~~~~~~~~ 725 (725)
.+++||||.++||
T Consensus 32 ~~~~RRR~~~~kK 44 (44)
T 2jwa_A 32 GILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHCSCCCC
T ss_pred HhheehhhhhccC
Confidence 3444555555443
No 168
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=72.32 E-value=1.8 Score=28.07 Aligned_cols=8 Identities=13% Similarity=0.397 Sum_probs=3.4
Q ss_pred HhheeEec
Q 045649 712 FKVLFQQR 719 (725)
Q Consensus 712 ~~~~~~~~ 719 (725)
++++++||
T Consensus 32 ~~~~~~rR 39 (41)
T 2k9y_A 32 VGFFIHRR 39 (41)
T ss_dssp HHHSSSSS
T ss_pred HheeEeee
Confidence 33444443
No 169
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=72.08 E-value=1.2 Score=28.38 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=9.7
Q ss_pred EeehHHHHHHHHHHHHHHHhheeEec
Q 045649 694 VIMFSSLMMVILLICLIGFKVLFQQR 719 (725)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (725)
+..+++.+++.++++++ ++++++||
T Consensus 13 IAGiVvG~v~gv~li~~-l~~~~~rr 37 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLG-ILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHCC
T ss_pred eeeeehHHHHHHHHHHH-HHHHHeec
Confidence 33344443333333333 33444443
No 170
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=54.27 E-value=2.4 Score=26.18 Aligned_cols=7 Identities=14% Similarity=0.406 Sum_probs=2.8
Q ss_pred heeEecc
Q 045649 714 VLFQQRK 720 (725)
Q Consensus 714 ~~~~~~~ 720 (725)
.++.|||
T Consensus 28 ~~~iRRr 34 (35)
T 1iij_A 28 GILIKRR 34 (35)
T ss_dssp THHHHHC
T ss_pred heEEeec
Confidence 3344443
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.50 E-value=40 Score=26.71 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=6.5
Q ss_pred cccCCCCCCCEEEcc
Q 045649 173 PEIGQLNLINELALC 187 (725)
Q Consensus 173 ~~~~~l~~L~~L~Ls 187 (725)
.+|.+|++|+.+.+-
T Consensus 14 ~aF~~c~~L~~i~iP 28 (100)
T 2lz0_A 14 SLFAGNTVIREITVQ 28 (100)
T ss_dssp CTTTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcC
Confidence 334444444444443
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.96 E-value=41 Score=26.65 Aligned_cols=40 Identities=10% Similarity=0.026 Sum_probs=20.3
Q ss_pred CccCcCCCCCCEEEccCCcCCcCCCcccCCCCCCCEEEccc
Q 045649 148 PQEIGHLNQLRSLYFDVNQLHGSIPPEIGQLNLINELALCH 188 (725)
Q Consensus 148 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~ 188 (725)
..+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344555555555555543 3323344555555555555544
No 173
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=52.69 E-value=4.1 Score=25.62 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=2.6
Q ss_pred heeEecc
Q 045649 714 VLFQQRK 720 (725)
Q Consensus 714 ~~~~~~~ 720 (725)
.++.++|
T Consensus 28 Li~~w~q 34 (39)
T 2l6w_A 28 LIMLWQK 34 (39)
Confidence 3333333
No 174
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=37.15 E-value=16 Score=26.00 Aligned_cols=8 Identities=25% Similarity=0.567 Sum_probs=3.6
Q ss_pred Eecccccc
Q 045649 717 QQRKDSAK 724 (725)
Q Consensus 717 ~~~~~~~~ 724 (725)
++|+|+++
T Consensus 35 rhRrrqAe 42 (70)
T 2klu_A 35 RHRRRQAE 42 (70)
T ss_dssp SCCSSSCT
T ss_pred HHHHHHHH
Confidence 44444444
No 175
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=31.11 E-value=20 Score=23.48 Aligned_cols=18 Identities=11% Similarity=-0.038 Sum_probs=7.8
Q ss_pred HHHHHHHhheeEeccccc
Q 045649 706 LICLIGFKVLFQQRKDSA 723 (725)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~ 723 (725)
++++++...++.-.||++
T Consensus 21 ~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 21 FILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 333333444445444444
No 176
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=27.34 E-value=16 Score=22.88 Aligned_cols=26 Identities=4% Similarity=-0.036 Sum_probs=12.7
Q ss_pred EeehHHHHHHHHHHHHHHHhheeEec
Q 045649 694 VIMFSSLMMVILLICLIGFKVLFQQR 719 (725)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (725)
+++++..+++.++..++++.|+.+|-
T Consensus 12 i~lII~~vmaGiIG~IllI~y~I~rl 37 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISYGIRRL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555455554443
No 177
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=26.05 E-value=29 Score=24.73 Aligned_cols=28 Identities=11% Similarity=-0.121 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhheeEeccccccC
Q 045649 698 SSLMMVILLICLIGFKVLFQQRKDSAKQ 725 (725)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (725)
++..++.+++.+.+.++++.|+++.++|
T Consensus 13 vlGg~~~lll~~glcI~ccvkcrhRrrq 40 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFSVRSRHRRRQ 40 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSSS
T ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444444444455556688877664
No 178
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=22.68 E-value=18 Score=35.87 Aligned_cols=10 Identities=10% Similarity=0.295 Sum_probs=0.0
Q ss_pred hheeEecccc
Q 045649 713 KVLFQQRKDS 722 (725)
Q Consensus 713 ~~~~~~~~~~ 722 (725)
+++++|+++.
T Consensus 302 ~~~~~~~~~~ 311 (315)
T 1cd1_A 302 YYIWRRRSAY 311 (315)
T ss_dssp ----------
T ss_pred HhheehhcCC
Confidence 4555555543
Done!