BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045653
         (272 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PY9|A Chain A, X-Ray Structural Studies Of The Entire Extra-Cellular
           Region Of The SerTHR KINASE PRKC FROM STAPHYLOCOCCUS
           AUREUS
          Length = 294

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 22/33 (66%)

Query: 131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLT 163
           L KL++L L ++ +EK++ +Q P  +   QS+T
Sbjct: 89  LQKLKSLGLKDVTIEKVYNNQAPKGYIANQSVT 121


>pdb|3M9G|A Chain A, Crystal Structure Of The Three-Pasta-Domain Of A SerTHR
           KINASE FROM Staphylococcus Aureus
          Length = 201

 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 12/60 (20%)

Query: 116 DKLDTSTTLFNDKVRLP------------KLEALELHEINVEKIWRSQVPAKFPRFQSLT 163
           D +D   +   +KV++P            KL++L L ++ +EK++ +Q P  +   QS+T
Sbjct: 57  DSVDVVISKGPEKVKMPNVIGLPKEEALQKLKSLGLKDVTIEKVYNNQAPKGYIANQSVT 116


>pdb|3RBT|A Chain A, Crystal Structure Of Glutathione S-Transferase Omega 3
           From The Silkworm Bombyx Mori
 pdb|3RBT|B Chain B, Crystal Structure Of Glutathione S-Transferase Omega 3
           From The Silkworm Bombyx Mori
 pdb|3RBT|C Chain C, Crystal Structure Of Glutathione S-Transferase Omega 3
           From The Silkworm Bombyx Mori
 pdb|3RBT|D Chain D, Crystal Structure Of Glutathione S-Transferase Omega 3
           From The Silkworm Bombyx Mori
          Length = 246

 Score = 28.5 bits (62), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 29  DRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQ 67
           DRL ++ FNEL    +E  D  FA G E  + T  IF +
Sbjct: 119 DRLLIERFNELIKGSLECFDTNFAFGSEQIIQTLEIFEK 157


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,183,221
Number of Sequences: 62578
Number of extensions: 260501
Number of successful extensions: 450
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 447
Number of HSP's gapped (non-prelim): 3
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)