Query 045653
Match_columns 272
No_of_seqs 115 out of 1191
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:06:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.6 3.1E-15 6.8E-20 148.5 14.1 230 8-261 632-910 (1153)
2 PLN03210 Resistant to P. syrin 99.4 1.2E-12 2.5E-17 130.3 14.4 105 9-142 610-714 (1153)
3 PLN00113 leucine-rich repeat r 99.3 2.2E-11 4.8E-16 119.9 11.1 127 125-261 229-373 (968)
4 PLN00113 leucine-rich repeat r 99.2 8.3E-11 1.8E-15 115.9 9.8 234 5-262 135-398 (968)
5 KOG4341 F-box protein containi 98.9 1.2E-11 2.6E-16 105.8 -8.4 107 158-270 318-427 (483)
6 KOG4341 F-box protein containi 98.8 6.7E-11 1.4E-15 101.3 -6.8 237 7-259 161-441 (483)
7 KOG4194 Membrane glycoprotein 98.6 7E-09 1.5E-13 92.7 1.1 231 4-255 164-427 (873)
8 KOG4194 Membrane glycoprotein 98.6 4.1E-08 8.9E-13 87.9 3.7 47 214-263 289-335 (873)
9 PRK15370 E3 ubiquitin-protein 98.4 1.5E-06 3.2E-11 82.7 8.7 83 160-264 325-407 (754)
10 KOG0444 Cytoskeletal regulator 98.3 2.1E-08 4.6E-13 90.5 -4.0 228 8-265 53-313 (1255)
11 KOG4658 Apoptotic ATPase [Sign 98.3 2.5E-07 5.3E-12 89.3 1.9 132 125-263 710-848 (889)
12 KOG0444 Cytoskeletal regulator 98.3 5.2E-08 1.1E-12 88.0 -3.3 120 125-258 238-376 (1255)
13 PRK15370 E3 ubiquitin-protein 98.2 1.3E-06 2.8E-11 83.1 5.0 100 132-255 325-426 (754)
14 PRK15387 E3 ubiquitin-protein 98.2 1.5E-05 3.1E-10 76.0 10.7 34 219-255 423-456 (788)
15 PF13855 LRR_8: Leucine rich r 98.2 3.2E-06 7E-11 54.2 4.4 59 132-196 1-59 (61)
16 cd00116 LRR_RI Leucine-rich re 98.1 1E-07 2.2E-12 82.0 -4.2 35 10-47 23-61 (319)
17 PRK15387 E3 ubiquitin-protein 98.1 4.2E-05 9.2E-10 72.9 11.4 38 218-262 382-419 (788)
18 PRK15386 type III secretion pr 98.0 3.1E-05 6.7E-10 68.1 9.4 17 67-83 73-89 (426)
19 KOG0617 Ras suppressor protein 98.0 1.5E-07 3.2E-12 72.1 -4.4 158 10-204 33-190 (264)
20 cd00116 LRR_RI Leucine-rich re 98.0 2.6E-07 5.6E-12 79.5 -3.6 226 8-255 49-289 (319)
21 KOG0618 Serine/threonine phosp 98.0 7.6E-07 1.7E-11 83.7 -0.9 113 125-256 376-488 (1081)
22 KOG3207 Beta-tubulin folding c 98.0 7.8E-07 1.7E-11 77.2 -1.1 213 8-252 119-334 (505)
23 KOG1947 Leucine rich repeat pr 97.9 4.4E-07 9.6E-12 82.4 -4.7 63 131-196 268-331 (482)
24 PF13855 LRR_8: Leucine rich r 97.9 5.3E-05 1.1E-09 48.4 6.0 40 128-171 21-60 (61)
25 KOG2120 SCF ubiquitin ligase, 97.8 5.2E-07 1.1E-11 74.8 -4.9 89 132-231 286-376 (419)
26 PF14580 LRR_9: Leucine-rich r 97.8 1.1E-05 2.5E-10 63.0 2.7 108 130-253 40-149 (175)
27 KOG0617 Ras suppressor protein 97.8 6.1E-07 1.3E-11 68.8 -4.5 65 125-195 95-159 (264)
28 PRK15386 type III secretion pr 97.8 6E-05 1.3E-09 66.3 6.6 16 160-175 94-109 (426)
29 KOG1947 Leucine rich repeat pr 97.7 1.1E-06 2.4E-11 79.8 -6.0 69 129-200 240-309 (482)
30 PF14580 LRR_9: Leucine-rich r 97.6 5.8E-05 1.3E-09 59.1 3.5 33 159-195 41-73 (175)
31 KOG3207 Beta-tubulin folding c 97.5 2E-05 4.3E-10 68.7 -0.7 113 130-255 195-312 (505)
32 KOG0472 Leucine-rich repeat pr 97.4 2E-06 4.3E-11 74.2 -7.1 112 123-255 197-308 (565)
33 KOG4658 Apoptotic ATPase [Sign 97.4 0.00012 2.7E-09 71.0 4.1 17 182-198 713-729 (889)
34 KOG4237 Extracellular matrix p 97.4 1.7E-05 3.6E-10 68.4 -2.0 77 4-88 61-137 (498)
35 KOG0618 Serine/threonine phosp 97.4 2.1E-05 4.6E-10 74.3 -1.5 87 156-258 379-465 (1081)
36 KOG3665 ZYG-1-like serine/thre 97.3 4.9E-05 1.1E-09 71.9 -0.4 91 128-227 169-259 (699)
37 KOG0472 Leucine-rich repeat pr 97.3 8.1E-07 1.7E-11 76.5 -11.1 131 123-266 151-296 (565)
38 KOG2120 SCF ubiquitin ligase, 97.1 1.6E-05 3.5E-10 66.2 -5.0 124 128-257 206-351 (419)
39 KOG1259 Nischarin, modulator o 97.0 0.00022 4.7E-09 59.7 0.9 113 132-255 284-410 (490)
40 PF12799 LRR_4: Leucine Rich r 96.6 0.0024 5.3E-08 37.7 3.0 40 218-261 1-40 (44)
41 KOG3864 Uncharacterized conser 96.4 0.00039 8.5E-09 54.8 -2.0 70 8-82 123-192 (221)
42 KOG1259 Nischarin, modulator o 96.2 0.00058 1.3E-08 57.2 -1.8 58 129-195 326-383 (490)
43 KOG3665 ZYG-1-like serine/thre 96.2 0.0015 3.3E-08 62.0 0.6 112 129-254 145-260 (699)
44 PLN03150 hypothetical protein; 96.1 0.013 2.7E-07 55.5 6.1 113 134-261 420-532 (623)
45 COG4886 Leucine-rich repeat (L 95.6 0.014 3.1E-07 51.8 4.2 106 130-256 184-289 (394)
46 PLN03150 hypothetical protein; 95.5 0.029 6.2E-07 53.1 6.1 69 123-197 433-501 (623)
47 KOG4237 Extracellular matrix p 95.4 0.0072 1.6E-07 52.6 1.5 88 128-229 270-357 (498)
48 PF12799 LRR_4: Leucine Rich r 95.4 0.022 4.7E-07 33.6 3.1 33 161-196 2-34 (44)
49 KOG1859 Leucine-rich repeat pr 95.4 0.00088 1.9E-08 62.4 -4.4 59 128-195 205-263 (1096)
50 KOG3864 Uncharacterized conser 94.8 0.0089 1.9E-07 47.4 0.3 78 173-258 113-190 (221)
51 KOG1644 U2-associated snRNP A' 94.6 0.058 1.3E-06 42.9 4.4 89 128-228 60-150 (233)
52 PF13504 LRR_7: Leucine rich r 94.0 0.045 9.7E-07 25.1 1.6 16 245-261 2-17 (17)
53 COG4886 Leucine-rich repeat (L 93.6 0.046 9.9E-07 48.6 2.3 60 128-196 228-287 (394)
54 KOG1644 U2-associated snRNP A' 93.5 0.18 3.8E-06 40.2 5.1 108 131-254 41-150 (233)
55 KOG2123 Uncharacterized conser 93.3 0.0021 4.6E-08 53.4 -6.0 103 131-250 18-123 (388)
56 KOG2739 Leucine-rich acidic nu 92.9 0.06 1.3E-06 44.3 1.8 111 131-257 42-156 (260)
57 KOG1859 Leucine-rich repeat pr 92.6 0.0012 2.7E-08 61.5 -9.2 81 128-227 183-263 (1096)
58 PF13306 LRR_5: Leucine rich r 92.4 1.6 3.6E-05 31.6 8.9 111 128-261 8-118 (129)
59 PF00560 LRR_1: Leucine Rich R 92.3 0.083 1.8E-06 25.9 1.2 19 245-264 1-19 (22)
60 smart00367 LRR_CC Leucine-rich 92.0 0.1 2.3E-06 26.7 1.4 17 243-259 1-17 (26)
61 KOG2982 Uncharacterized conser 91.3 0.15 3.2E-06 43.2 2.3 70 129-202 196-265 (418)
62 KOG2982 Uncharacterized conser 91.2 0.12 2.6E-06 43.7 1.7 65 127-196 92-156 (418)
63 KOG0531 Protein phosphatase 1, 90.9 0.091 2E-06 47.2 0.8 60 128-196 91-150 (414)
64 PF13306 LRR_5: Leucine rich r 89.3 1.5 3.3E-05 31.8 6.2 89 128-236 31-119 (129)
65 KOG0532 Leucine-rich repeat (L 88.5 0.11 2.3E-06 47.6 -0.6 100 134-254 145-244 (722)
66 KOG2739 Leucine-rich acidic nu 86.2 0.4 8.8E-06 39.6 1.5 67 130-199 89-156 (260)
67 KOG2123 Uncharacterized conser 84.4 0.073 1.6E-06 44.5 -3.6 82 159-255 18-99 (388)
68 KOG0532 Leucine-rich repeat (L 83.0 0.23 4.9E-06 45.6 -1.3 87 123-227 157-243 (722)
69 KOG1909 Ran GTPase-activating 82.7 0.33 7.1E-06 41.8 -0.5 126 126-256 179-310 (382)
70 KOG1909 Ran GTPase-activating 82.0 0.11 2.3E-06 44.8 -3.6 102 124-229 205-309 (382)
71 KOG0531 Protein phosphatase 1, 78.7 1.4 3.1E-05 39.5 2.2 102 130-254 70-172 (414)
72 smart00369 LRR_TYP Leucine-ric 65.2 3.8 8.2E-05 20.6 1.0 15 132-146 2-16 (26)
73 smart00370 LRR Leucine-rich re 65.2 3.8 8.2E-05 20.6 1.0 15 132-146 2-16 (26)
74 KOG4579 Leucine-rich repeat (L 57.4 2.5 5.4E-05 31.9 -0.7 59 131-196 52-110 (177)
75 PF13516 LRR_6: Leucine Rich r 55.0 9.2 0.0002 18.7 1.4 12 66-77 2-13 (24)
76 smart00365 LRR_SD22 Leucine-ri 43.8 21 0.00045 18.3 1.6 15 132-146 2-16 (26)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.63 E-value=3.1e-15 Score=148.47 Aligned_cols=230 Identities=20% Similarity=0.292 Sum_probs=132.4
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK 87 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 87 (272)
.+++|+.|+|+++.+++.+ +....+++|+.|++.+|..+...+.... .+++|+.|++++|..++.+|....
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~i----p~ls~l~~Le~L~L~~c~~L~~lp~si~-----~L~~L~~L~L~~c~~L~~Lp~~i~ 702 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEI----PDLSMATNLETLKLSDCSSLVELPSSIQ-----YLNKLEDLDMSRCENLEILPTGIN 702 (1153)
T ss_pred cCCCCCEEECCCCCCcCcC----CccccCCcccEEEecCCCCccccchhhh-----ccCCCCEEeCCCCCCcCccCCcCC
Confidence 4566666666666555555 2344567777777777766654432211 456677777777766666665432
Q ss_pred ccccc-ccccc-cccccc----ceeecceeeeccCCCCccccccc------------------------------ccCCC
Q 045653 88 RHSIS-SNTKD-SQDQSM----TAITCSYEVNLEDKLDTSTTLFN------------------------------DKVRL 131 (272)
Q Consensus 88 ~~~~~-~~~~~-~~~~~~----~~l~~~l~i~~~~~~~~~~~~~~------------------------------~~~~l 131 (272)
..++. +.+.. .....+ .+|+ .+++..+. .. .++. .....
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~~~nL~-~L~L~~n~-i~---~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDISTNIS-WLDLDETA-IE---EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCEEeCCCCCCccccccccCCcC-eeecCCCc-cc---cccccccccccccccccccchhhccccccccchhhhhcc
Confidence 22221 00000 000000 1111 22221111 00 0110 01123
Q ss_pred CCccEEEeccc-cceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC---
Q 045653 132 PKLEALELHEI-NVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT--- 207 (272)
Q Consensus 132 ~~L~~L~L~~~-~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~--- 207 (272)
++|+.|++.+| .+.. +|..+..+++|+.|++.+|+.+..+ |.. .++++|+.|++++|..+..++....
T Consensus 778 ~sL~~L~Ls~n~~l~~-----lP~si~~L~~L~~L~Ls~C~~L~~L-P~~--~~L~sL~~L~Ls~c~~L~~~p~~~~nL~ 849 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVE-----LPSSIQNLHKLEHLEIENCINLETL-PTG--INLESLESLDLSGCSRLRTFPDISTNIS 849 (1153)
T ss_pred ccchheeCCCCCCccc-----cChhhhCCCCCCEEECCCCCCcCee-CCC--CCccccCEEECCCCCccccccccccccC
Confidence 46666666666 3333 2334567888999999988888877 532 2688889999998877765442110
Q ss_pred --------cccc-CCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccc
Q 045653 208 --------AIQV-TPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFG 261 (272)
Q Consensus 208 --------~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~ 261 (272)
.... ..+..+++|+.|++.+|.+++.++... ..+++|+.+++++|++++.++
T Consensus 850 ~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~--~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 850 DLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI--SKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred EeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccc--ccccCCCeeecCCCccccccc
Confidence 0000 124457899999999999999988766 678999999999999987543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.45 E-value=1.2e-12 Score=130.30 Aligned_cols=105 Identities=17% Similarity=0.243 Sum_probs=63.0
Q ss_pred CCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccc
Q 045653 9 FPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKR 88 (272)
Q Consensus 9 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 88 (272)
+.+|++|.+.++ .++.++ .....+++|+.|++++|..+...+.. . .+++|+.|++++|..+..+|.....
T Consensus 610 ~~~L~~L~L~~s-~l~~L~---~~~~~l~~Lk~L~Ls~~~~l~~ip~l--s----~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 610 PENLVKLQMQGS-KLEKLW---DGVHSLTGLRNIDLRGSKNLKEIPDL--S----MATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred ccCCcEEECcCc-cccccc---cccccCCCCCEEECCCCCCcCcCCcc--c----cCCcccEEEecCCCCccccchhhhc
Confidence 356777777764 355552 23356888899998888777655421 1 5789999999999888877653221
Q ss_pred cccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccc
Q 045653 89 HSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEI 142 (272)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 142 (272)
++.|+ .+.+..|..+. .++... .+++|+.|.+.+|
T Consensus 680 --------------L~~L~-~L~L~~c~~L~---~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 680 --------------LNKLE-DLDMSRCENLE---ILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred --------------cCCCC-EEeCCCCCCcC---ccCCcC-CCCCCCEEeCCCC
Confidence 22333 45555555444 233221 4555555555555
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.27 E-value=2.2e-11 Score=119.89 Aligned_cols=127 Identities=20% Similarity=0.164 Sum_probs=59.0
Q ss_pred ccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeec
Q 045653 125 FNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIIS 204 (272)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 204 (272)
+..+..+++|+.|++.+|++... .|..+..+++|++|++.++.-...+ | ..+.++++|++|++++|. +....+
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~-p-~~l~~l~~L~~L~Ls~n~-l~~~~p 301 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGP----IPSSLGNLKNLQYLFLYQNKLSGPI-P-PSIFSLQKLISLDLSDNS-LSGEIP 301 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccc----cChhHhCCCCCCEEECcCCeeeccC-c-hhHhhccCcCEEECcCCe-eccCCC
Confidence 33445556666666666544321 1223344555666655554322222 2 234455555555555542 211110
Q ss_pred cCCccc------------------cCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccc
Q 045653 205 EDTAIQ------------------VTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFG 261 (272)
Q Consensus 205 ~~~~~~------------------~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~ 261 (272)
. .... ......+++|+.|+++++.-...++... ..+++|+.|+++++.--..+|
T Consensus 302 ~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 302 E-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred h-hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCC
Confidence 0 0000 0112345677777776664333444433 456777777777664333343
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.18 E-value=8.3e-11 Score=115.89 Aligned_cols=234 Identities=16% Similarity=0.100 Sum_probs=111.0
Q ss_pred CCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcccccc
Q 045653 5 PCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCR 84 (272)
Q Consensus 5 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 84 (272)
+...+++|++|+++++.-...+ +...+.+++|++|++++|......+. ..+ .+++|+.|+++++.-...+|.
T Consensus 135 p~~~l~~L~~L~Ls~n~~~~~~---p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~----~l~~L~~L~L~~n~l~~~~p~ 206 (968)
T PLN00113 135 PRGSIPNLETLDLSNNMLSGEI---PNDIGSFSSLKVLDLGGNVLVGKIPN-SLT----NLTSLEFLTLASNQLVGQIPR 206 (968)
T ss_pred CccccCCCCEEECcCCcccccC---ChHHhcCCCCCEEECccCcccccCCh-hhh----hCcCCCeeeccCCCCcCcCCh
Confidence 4456788999999886432222 33456688888888888743221111 111 456666666666543222222
Q ss_pred Cccc-cccc-cc-----cccc---cccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccC----
Q 045653 85 EVKR-HSIS-SN-----TKDS---QDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRS---- 150 (272)
Q Consensus 85 ~~~~-~~~~-~~-----~~~~---~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~---- 150 (272)
.... ..+. +. +... .....++|+ .+++..+.-.. .++..+..+++|+.|++.+|++....+.
T Consensus 207 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~L~~n~l~~---~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 282 (968)
T PLN00113 207 ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN-HLDLVYNNLTG---PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282 (968)
T ss_pred HHcCcCCccEEECcCCccCCcCChhHhcCCCCC-EEECcCceecc---ccChhHhCCCCCCEEECcCCeeeccCchhHhh
Confidence 1110 0000 00 0000 011123333 44444433221 2333445555666666665543321111
Q ss_pred ----------------CCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCc
Q 045653 151 ----------------QVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPC 214 (272)
Q Consensus 151 ----------------~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 214 (272)
..|..+..+++|++|++.++.-...+ + ..+..+++|+.|++.+|.--..++ ...
T Consensus 283 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~-~-~~~~~l~~L~~L~L~~n~l~~~~p--------~~l 352 (968)
T PLN00113 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI-P-VALTSLPRLQVLQLWSNKFSGEIP--------KNL 352 (968)
T ss_pred ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC-C-hhHhcCCCCCEEECcCCCCcCcCC--------hHH
Confidence 01112233444455544443222111 2 234445555555555442111111 113
Q ss_pred cCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCccccc
Q 045653 215 FVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGS 262 (272)
Q Consensus 215 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~ 262 (272)
..+++|+.|+++++.--..++... ..+++|+.|++.+++-...+|.
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~--~~~~~L~~L~l~~n~l~~~~p~ 398 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGL--CSSGNLFKLILFSNSLEGEIPK 398 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhH--hCcCCCCEEECcCCEecccCCH
Confidence 345899999999875444455544 5678899999987754344443
No 5
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.88 E-value=1.2e-11 Score=105.79 Aligned_cols=107 Identities=20% Similarity=0.175 Sum_probs=63.2
Q ss_pred CCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCC
Q 045653 158 RFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPG 237 (272)
Q Consensus 158 ~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 237 (272)
..++|+.|.+..|..+++..-.....+.++|+.+++.+|..+..-.-..-.. ..|.||.|.+++|..+++....
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~------~C~~lr~lslshce~itD~gi~ 391 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR------NCPRLRVLSLSHCELITDEGIR 391 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc------CCchhccCChhhhhhhhhhhhh
Confidence 4566666666666666655222233456666666666665443321101112 2489999999999888877321
Q ss_pred C---ccccCCCcCEEeecCCCCCccccccccccccc
Q 045653 238 M---HTSEWPTLQSLEATGCDNLKIFGSELSSFCGN 270 (272)
Q Consensus 238 ~---~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~~ 270 (272)
. .......|+.+++.+||.++.---+..+.|.+
T Consensus 392 ~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 392 HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred hhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 1 11345678889999999887654455555544
No 6
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.80 E-value=6.7e-11 Score=101.29 Aligned_cols=237 Identities=17% Similarity=0.160 Sum_probs=142.1
Q ss_pred CCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCC-CccccceeccccCeEEecCCCCcccc---
Q 045653 7 DAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGE-ADVVTEGIFAQISCLSLGNLPQLTSF--- 82 (272)
Q Consensus 7 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~~--- 82 (272)
..+||.++|.+.+|.++++. ........+++|+.+++..|..++..... ... .+++|++|++++|+.+..-
T Consensus 161 ~~CpnIehL~l~gc~~iTd~-s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~----gC~kL~~lNlSwc~qi~~~gv~ 235 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDS-SLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE----GCRKLKYLNLSWCPQISGNGVQ 235 (483)
T ss_pred hhCCchhhhhhhcceeccHH-HHHHHHHhcchhhhhhhcccchhHHHHHHHHHH----hhhhHHHhhhccCchhhcCcch
Confidence 35688888888888877766 22233445788888888888877643211 001 4788888888888776651
Q ss_pred --ccCccccccc-cccc--------------cc-------cccccceee--------------cceeeeccCCCCccccc
Q 045653 83 --CREVKRHSIS-SNTK--------------DS-------QDQSMTAIT--------------CSYEVNLEDKLDTSTTL 124 (272)
Q Consensus 83 --~~~~~~~~~~-~~~~--------------~~-------~~~~~~~l~--------------~~l~i~~~~~~~~~~~~ 124 (272)
..+-.. ++ ...+ .+ .++....++ ..+....|.+. +...+
T Consensus 236 ~~~rG~~~--l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~-~d~~l 312 (483)
T KOG4341|consen 236 ALQRGCKE--LEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDI-TDEVL 312 (483)
T ss_pred HHhccchh--hhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCC-chHHH
Confidence 111000 00 0000 00 000000011 02222222221 11122
Q ss_pred ccccCCCCCccEEEeccc-cceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceee
Q 045653 125 FNDKVRLPKLEALELHEI-NVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGII 203 (272)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~-~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~ 203 (272)
..-..+.++|+.|.+.+| ++... .....-.+++.|+.+.+..|....+--......+++.|+.+.++.|..+++.
T Consensus 313 ~aLg~~~~~L~~l~l~~c~~fsd~---~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~- 388 (483)
T KOG4341|consen 313 WALGQHCHNLQVLELSGCQQFSDR---GFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE- 388 (483)
T ss_pred HHHhcCCCceEEEeccccchhhhh---hhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh-
Confidence 222356789999999999 55442 1111334789999999999887766422234568999999999999766554
Q ss_pred ccCCcccc-CCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcc
Q 045653 204 SEDTAIQV-TPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKI 259 (272)
Q Consensus 204 ~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~ 259 (272)
++.+. ....+...|+.+.+++|+.+++-.... ...++.|+.+++.+|...+.
T Consensus 389 ---gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~-l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 389 ---GIRHLSSSSCSLEGLEVLELDNCPLITDATLEH-LSICRNLERIELIDCQDVTK 441 (483)
T ss_pred ---hhhhhhhccccccccceeeecCCCCchHHHHHH-HhhCcccceeeeechhhhhh
Confidence 22222 123445789999999999988776543 25789999999999988754
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.65 E-value=7e-09 Score=92.69 Aligned_cols=231 Identities=17% Similarity=0.195 Sum_probs=122.3
Q ss_pred CCCCCCC---CcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcc
Q 045653 4 VPCDAFP---LLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLT 80 (272)
Q Consensus 4 ~~~~~~~---~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 80 (272)
++..+|| ++++|.|.+ ..++.+.. .....+.+|-.|++.+. .++..+...+. .+|+|+.|++.. ++++
T Consensus 164 i~~~sfp~~~ni~~L~La~-N~It~l~~--~~F~~lnsL~tlkLsrN-rittLp~r~Fk----~L~~L~~LdLnr-N~ir 234 (873)
T KOG4194|consen 164 IPKPSFPAKVNIKKLNLAS-NRITTLET--GHFDSLNSLLTLKLSRN-RITTLPQRSFK----RLPKLESLDLNR-NRIR 234 (873)
T ss_pred ccCCCCCCCCCceEEeecc-cccccccc--ccccccchheeeecccC-cccccCHHHhh----hcchhhhhhccc-ccee
Confidence 4566775 699999987 44444422 22335667888888775 33444332222 367777766642 2222
Q ss_pred ccccCccc--cccc------cccccccccccceeec--ceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccC
Q 045653 81 SFCREVKR--HSIS------SNTKDSQDQSMTAITC--SYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRS 150 (272)
Q Consensus 81 ~~~~~~~~--~~~~------~~~~~~~~~~~~~l~~--~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~ 150 (272)
-..-.... .+++ ..+..-+.+.+..+++ .+++....-.. .--+++..+++|+.|+++.+.+..|-.+
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~---vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA---VNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh---hhcccccccchhhhhccchhhhheeecc
Confidence 21000000 0000 0000011111222221 11111111100 1134566778888888888855554333
Q ss_pred CCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeecc-------------------CCccc-
Q 045653 151 QVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISE-------------------DTAIQ- 210 (272)
Q Consensus 151 ~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~-------------------~~~~~- 210 (272)
.....++|+.|++++ ++++.+ ++..+..+.+|++|+++.. +++.+... ..+++
T Consensus 312 ----~WsftqkL~~LdLs~-N~i~~l-~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 312 ----SWSFTQKLKELDLSS-NRITRL-DEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred ----hhhhcccceeEeccc-cccccC-ChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence 234678888888887 566666 5566666666666666653 34322200 00010
Q ss_pred cCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653 211 VTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 211 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 255 (272)
......+++|++|++.+ .+++.++..++ .+++.|++|++.+.+
T Consensus 385 a~~f~gl~~LrkL~l~g-Nqlk~I~krAf-sgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTG-NQLKSIPKRAF-SGLEALEHLDLGDNA 427 (873)
T ss_pred hhhhccchhhhheeecC-ceeeecchhhh-ccCcccceecCCCCc
Confidence 12344578999999977 58888887554 478899999988764
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.57 E-value=4.1e-08 Score=87.89 Aligned_cols=47 Identities=13% Similarity=0.083 Sum_probs=29.7
Q ss_pred ccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccccc
Q 045653 214 CFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSE 263 (272)
Q Consensus 214 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~ 263 (272)
+-++++|+.|++++ ..+.++..... ..+++|+.|++++. +++.++++
T Consensus 289 lfgLt~L~~L~lS~-NaI~rih~d~W-sftqkL~~LdLs~N-~i~~l~~~ 335 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSY-NAIQRIHIDSW-SFTQKLKELDLSSN-RITRLDEG 335 (873)
T ss_pred ccccchhhhhccch-hhhheeecchh-hhcccceeEecccc-ccccCChh
Confidence 34567788888876 36666655432 24678888888754 56666543
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.36 E-value=1.5e-06 Score=82.71 Aligned_cols=83 Identities=25% Similarity=0.226 Sum_probs=40.1
Q ss_pred CCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCc
Q 045653 160 QSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMH 239 (272)
Q Consensus 160 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 239 (272)
++|++|.+.+| .++.+ |.. -.++|+.|++++| ++..++ ... .++|+.|+++++ +++.+|...
T Consensus 325 ~sL~~L~Ls~N-~Lt~L-P~~---l~~sL~~L~Ls~N-~L~~LP--~~l--------p~~L~~LdLs~N-~Lt~LP~~l- 386 (754)
T PRK15370 325 PGLKTLEAGEN-ALTSL-PAS---LPPELQVLDVSKN-QITVLP--ETL--------PPTITTLDVSRN-ALTNLPENL- 386 (754)
T ss_pred ccceeccccCC-ccccC-Chh---hcCcccEEECCCC-CCCcCC--hhh--------cCCcCEEECCCC-cCCCCCHhH-
Confidence 45555555553 23333 321 1245666666654 233332 100 146666666665 455554432
Q ss_pred cccCCCcCEEeecCCCCCccccccc
Q 045653 240 TSEWPTLQSLEATGCDNLKIFGSEL 264 (272)
Q Consensus 240 ~~~~~~L~~L~i~~c~~l~~l~~~~ 264 (272)
.+.|+.|+++++ +++.+|..+
T Consensus 387 ---~~sL~~LdLs~N-~L~~LP~sl 407 (754)
T PRK15370 387 ---PAALQIMQASRN-NLVRLPESL 407 (754)
T ss_pred ---HHHHHHHhhccC-CcccCchhH
Confidence 124666666664 455555443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.34 E-value=2.1e-08 Score=90.52 Aligned_cols=228 Identities=18% Similarity=0.202 Sum_probs=112.4
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccce-eccccCeEEecCCCCccccccCc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEG-IFAQISCLSLGNLPQLTSFCREV 86 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~~~~~~ 86 (272)
.+.+|++|.+.+ .+|..+ + .....+|.|+.+.+++. +|..-+.. .++ .+..|+.|+++. +.++..|.+.
T Consensus 53 ~lqkLEHLs~~H-N~L~~v-h--GELs~Lp~LRsv~~R~N-~LKnsGiP----~diF~l~dLt~lDLSh-NqL~EvP~~L 122 (1255)
T KOG0444|consen 53 RLQKLEHLSMAH-NQLISV-H--GELSDLPRLRSVIVRDN-NLKNSGIP----TDIFRLKDLTILDLSH-NQLREVPTNL 122 (1255)
T ss_pred HHhhhhhhhhhh-hhhHhh-h--hhhccchhhHHHhhhcc-ccccCCCC----chhcccccceeeecch-hhhhhcchhh
Confidence 456788888876 566666 3 34457888998888875 44332211 233 678888888875 4555555421
Q ss_pred cc--cccccc-----cccccccccceeec--ceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCC
Q 045653 87 KR--HSISSN-----TKDSQDQSMTAITC--SYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFP 157 (272)
Q Consensus 87 ~~--~~~~~~-----~~~~~~~~~~~l~~--~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~ 157 (272)
.. .++-+| +++---.-+.+|+- .+++.. +. .+.+|....++.+|+.|+|+++.+..+...++ +
T Consensus 123 E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-Nr---Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL----P 194 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NR---LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL----P 194 (1255)
T ss_pred hhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-ch---hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcC----c
Confidence 11 000000 00000000111110 111111 11 12566667788888888888884433222222 2
Q ss_pred CCCCcCEEEEecCcCCccccc----------------------hHHHhccccCcEEEeecCCCcceeeccCCccccCCcc
Q 045653 158 RFQSLTRLVVSNCHKLKYLFS----------------------ASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCF 215 (272)
Q Consensus 158 ~l~~L~~L~i~~c~~l~~l~~----------------------~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~ 215 (272)
++.+|+.|.+++-.+-.+-+| +..+-.+++|+.|++++. +++++. .+...
T Consensus 195 smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N-~iteL~--~~~~~----- 266 (1255)
T KOG0444|consen 195 SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN-KITELN--MTEGE----- 266 (1255)
T ss_pred cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC-ceeeee--ccHHH-----
Confidence 344444444444332222212 133445555555555553 344443 12212
Q ss_pred CCCccCeeecccccccccccCCCccccCCCcCEEeecCCC-CCcccccccc
Q 045653 216 VFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD-NLKIFGSELS 265 (272)
Q Consensus 216 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~-~l~~l~~~~~ 265 (272)
..+|++|+++. .+++.+|... ..+++|++|.+.+.. .+..+|+++.
T Consensus 267 -W~~lEtLNlSr-NQLt~LP~av--cKL~kL~kLy~n~NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 267 -WENLETLNLSR-NQLTVLPDAV--CKLTKLTKLYANNNKLTFEGIPSGIG 313 (1255)
T ss_pred -Hhhhhhhcccc-chhccchHHH--hhhHHHHHHHhccCcccccCCccchh
Confidence 25666666666 3666666655 456666666655432 1234665554
No 11
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.30 E-value=2.5e-07 Score=89.30 Aligned_cols=132 Identities=23% Similarity=0.351 Sum_probs=85.8
Q ss_pred ccccCCCCCccEEEeccccceEe---ccCCCCCCCCC-CCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcc
Q 045653 125 FNDKVRLPKLEALELHEINVEKI---WRSQVPAKFPR-FQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLL 200 (272)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~l~~i---~~~~~~~~~~~-l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~ 200 (272)
+.....+++|+.|.+.+|...++ |.... .... ++++..+.+.+|....++ .+..-.++|+.|.+.+|+.++
T Consensus 710 ~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~--~~~~~f~~l~~~~~~~~~~~r~l---~~~~f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 710 ISSLGSLGNLEELSILDCGISEIVIEWEESL--IVLLCFPNLSKVSILNCHMLRDL---TWLLFAPHLTSLSLVSCRLLE 784 (889)
T ss_pred ecccccccCcceEEEEcCCCchhhccccccc--chhhhHHHHHHHHhhcccccccc---chhhccCcccEEEEecccccc
Confidence 34456788999999999954332 21111 1112 678888888889888877 455678999999999999888
Q ss_pred eeeccCCcc-ccC-CccCCCccCee-ecccccccccccCCCccccCCCcCEEeecCCCCCcccccc
Q 045653 201 GIISEDTAI-QVT-PCFVFPRVSTL-RLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSE 263 (272)
Q Consensus 201 ~~~~~~~~~-~~~-~~~~l~~L~~L-~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~ 263 (272)
++.+..... ... ....+..++.+ .+.+..++..+.... ..++.|+.+.+..||++..+|..
T Consensus 785 ~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 785 DIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred cCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecc--cCccchhheehhcCcccccCccc
Confidence 776533221 111 13345566666 455555655555433 34556888888888888877754
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.26 E-value=5.2e-08 Score=88.04 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=69.9
Q ss_pred ccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCc--cee
Q 045653 125 FNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGL--LGI 202 (272)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l--~~~ 202 (272)
|+.+..+++|+.|+|+++++.+.-.. ...-.+|+.|.++. +.++.+ | ..+..++.|+.|.+.+. ++ +.+
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL~~~-----~~~W~~lEtLNlSr-NQLt~L-P-~avcKL~kL~kLy~n~N-kL~FeGi 308 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITELNMT-----EGEWENLETLNLSR-NQLTVL-P-DAVCKLTKLTKLYANNN-KLTFEGI 308 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeeeecc-----HHHHhhhhhhcccc-chhccc-h-HHHhhhHHHHHHHhccC-cccccCC
Confidence 44455566666666666655442111 11124455555554 344444 3 34556666766666543 22 222
Q ss_pred eccCCcc-----------------ccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCc
Q 045653 203 ISEDTAI-----------------QVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLK 258 (272)
Q Consensus 203 ~~~~~~~-----------------~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~ 258 (272)
+ .++. ..+.+...+.|+.|.+++ ..+.++|.+. .-++.|+.|+++..|++-
T Consensus 309 P--SGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaI--HlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 309 P--SGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAI--HLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred c--cchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhh--hhcCCcceeeccCCcCcc
Confidence 2 1110 012345568999999865 6888899988 568999999999999885
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.23 E-value=1.3e-06 Score=83.11 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=50.1
Q ss_pred CCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCcccc
Q 045653 132 PKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQV 211 (272)
Q Consensus 132 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 211 (272)
++|+.|++.+|.+..+ +. .+ .++|+.|++.++ .+..+ |.. -.++|+.|++.+| .+..++. ..
T Consensus 325 ~sL~~L~Ls~N~Lt~L-P~----~l--~~sL~~L~Ls~N-~L~~L-P~~---lp~~L~~LdLs~N-~Lt~LP~--~l--- 386 (754)
T PRK15370 325 PGLKTLEAGENALTSL-PA----SL--PPELQVLDVSKN-QITVL-PET---LPPTITTLDVSRN-ALTNLPE--NL--- 386 (754)
T ss_pred ccceeccccCCccccC-Ch----hh--cCcccEEECCCC-CCCcC-Chh---hcCCcCEEECCCC-cCCCCCH--hH---
Confidence 4566666666654442 11 11 256777777664 34444 321 1256677777765 3444431 11
Q ss_pred CCccCCCccCeeecccccccccccCCC--ccccCCCcCEEeecCCC
Q 045653 212 TPCFVFPRVSTLRLIDLPKLRFFYPGM--HTSEWPTLQSLEATGCD 255 (272)
Q Consensus 212 ~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~~~~~L~~L~i~~c~ 255 (272)
.+.|+.|+++++ +++.+|... ....++.+..|++.+.+
T Consensus 387 -----~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 387 -----PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred -----HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 135666666663 555555432 11234566666666654
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.17 E-value=1.5e-05 Score=75.97 Aligned_cols=34 Identities=9% Similarity=0.095 Sum_probs=21.7
Q ss_pred ccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653 219 RVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 219 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 255 (272)
+|+.|++.+. +++.+|... ..++.|+.|++++++
T Consensus 423 ~L~~L~Ls~N-qLt~LP~sl--~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 423 GLLSLSVYRN-QLTRLPESL--IHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhccC-cccccChHH--hhccCCCeEECCCCC
Confidence 4566666553 566666554 567778888887764
No 15
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.17 E-value=3.2e-06 Score=54.16 Aligned_cols=59 Identities=25% Similarity=0.410 Sum_probs=39.8
Q ss_pred CCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653 132 PKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC 196 (272)
Q Consensus 132 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 196 (272)
|+|+.|++.+|++..+.++ .+..+++|++|++.+ +.+..+ +...+.++++|++|++.++
T Consensus 1 p~L~~L~l~~n~l~~i~~~----~f~~l~~L~~L~l~~-N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPD----SFSNLPNLETLDLSN-NNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTT----TTTTGTTESEEEETS-SSESEE-ETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHH----HHcCCCCCCEeEccC-CccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 5677777777777765433 455677777777774 455565 5556677777777777765
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.13 E-value=1e-07 Score=81.98 Aligned_cols=35 Identities=14% Similarity=0.058 Sum_probs=17.7
Q ss_pred CCcceeeeccccc----ccccccccccccccCCccEEEEccC
Q 045653 10 PLLESLTLHNLIN----LERICIDRLKVDSFNELKTIKVESC 47 (272)
Q Consensus 10 ~~L~~L~L~~~~~----l~~~~~~~~~~~~~~~L~~L~l~~c 47 (272)
.+|++|.+.++.- +..+ .......++|++++++++
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i---~~~l~~~~~l~~l~l~~~ 61 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKAL---ASALRPQPSLKELCLSLN 61 (319)
T ss_pred hhccEEeecCCCCcHHHHHHH---HHHHhhCCCceEEecccc
Confidence 4577777776541 1111 112233456677776665
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.06 E-value=4.2e-05 Score=72.87 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=22.2
Q ss_pred CccCeeecccccccccccCCCccccCCCcCEEeecCCCCCccccc
Q 045653 218 PRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGS 262 (272)
Q Consensus 218 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~ 262 (272)
++|+.|+++++ .++.++.. .+.|+.|+++++ +++.+|.
T Consensus 382 ~~L~~LdLs~N-~Lt~LP~l-----~s~L~~LdLS~N-~LssIP~ 419 (788)
T PRK15387 382 SGLKELIVSGN-RLTSLPVL-----PSELKELMVSGN-RLTSLPM 419 (788)
T ss_pred cccceEEecCC-cccCCCCc-----ccCCCEEEccCC-cCCCCCc
Confidence 36777777664 55554432 245777777765 3555553
No 18
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=3.1e-05 Score=68.14 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=8.1
Q ss_pred ccCeEEecCCCCccccc
Q 045653 67 QISCLSLGNLPQLTSFC 83 (272)
Q Consensus 67 ~L~~L~l~~c~~l~~~~ 83 (272)
+|+.|.+++|..++.+|
T Consensus 73 sLtsL~Lsnc~nLtsLP 89 (426)
T PRK15386 73 ELTEITIENCNNLTTLP 89 (426)
T ss_pred CCcEEEccCCCCcccCC
Confidence 35555555554444433
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.04 E-value=1.5e-07 Score=72.12 Aligned_cols=158 Identities=17% Similarity=0.232 Sum_probs=95.4
Q ss_pred CCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcccc
Q 045653 10 PLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRH 89 (272)
Q Consensus 10 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 89 (272)
.+...|.+++ ..++.+ ++....+.+|+.|++.+. ++...+...+ .+|+|++|++. ..++..+|.+..
T Consensus 33 s~ITrLtLSH-NKl~~v---ppnia~l~nlevln~~nn-qie~lp~~is-----sl~klr~lnvg-mnrl~~lprgfg-- 99 (264)
T KOG0617|consen 33 SNITRLTLSH-NKLTVV---PPNIAELKNLEVLNLSNN-QIEELPTSIS-----SLPKLRILNVG-MNRLNILPRGFG-- 99 (264)
T ss_pred hhhhhhhccc-Cceeec---CCcHHHhhhhhhhhcccc-hhhhcChhhh-----hchhhhheecc-hhhhhcCccccC--
Confidence 3444555554 223333 455556777888877764 3444333222 37888888874 566666665532
Q ss_pred ccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEec
Q 045653 90 SISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSN 169 (272)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~ 169 (272)
++|+++ .+++.-.+-. ..++++.+..+..|+.|++.+++++.+.+ -.+.+.+|+.|.+++
T Consensus 100 ------------s~p~le-vldltynnl~--e~~lpgnff~m~tlralyl~dndfe~lp~-----dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 100 ------------SFPALE-VLDLTYNNLN--ENSLPGNFFYMTTLRALYLGDNDFEILPP-----DVGKLTNLQILSLRD 159 (264)
T ss_pred ------------CCchhh-hhhccccccc--cccCCcchhHHHHHHHHHhcCCCcccCCh-----hhhhhcceeEEeecc
Confidence 256666 5555433221 12456666667788888888876665322 345788888888887
Q ss_pred CcCCccccchHHHhccccCcEEEeecCCCcceeec
Q 045653 170 CHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIIS 204 (272)
Q Consensus 170 c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 204 (272)
+.+..+ | ..++.+++|++|+|.|. .++-+++
T Consensus 160 -ndll~l-p-keig~lt~lrelhiqgn-rl~vlpp 190 (264)
T KOG0617|consen 160 -NDLLSL-P-KEIGDLTRLRELHIQGN-RLTVLPP 190 (264)
T ss_pred -CchhhC-c-HHHHHHHHHHHHhcccc-eeeecCh
Confidence 444455 5 35677888888888874 4665553
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.04 E-value=2.6e-07 Score=79.47 Aligned_cols=226 Identities=15% Similarity=-0.002 Sum_probs=111.8
Q ss_pred CCCCcceeeecccccccc----cccccccccccCCccEEEEccCccceeecCCCccccceec---cccCeEEecCCCCcc
Q 045653 8 AFPLLESLTLHNLINLER----ICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIF---AQISCLSLGNLPQLT 80 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~----~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l---~~L~~L~l~~c~~l~ 80 (272)
.+++++++.+.++.. .. +.........+++|++|++++|..-..... ... .+ ++|++|++++|. +.
T Consensus 49 ~~~~l~~l~l~~~~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~----~l~~~~~L~~L~ls~~~-~~ 121 (319)
T cd00116 49 PQPSLKELCLSLNET-GRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG-VLE----SLLRSSSLQELKLNNNG-LG 121 (319)
T ss_pred hCCCceEEecccccc-CCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH-HHH----HHhccCcccEEEeeCCc-cc
Confidence 446788888877532 21 000011223467999999998854321110 000 23 449999998874 32
Q ss_pred ccccCcccccccccccccccccc-ceeecceeeeccCCCCc-ccccccccCCCCCccEEEeccccceEeccCCCCCCCCC
Q 045653 81 SFCREVKRHSISSNTKDSQDQSM-TAITCSYEVNLEDKLDT-STTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPR 158 (272)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~i~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~ 158 (272)
+......... .... +.++ .+++..|.-... ...+...+..+++|+.|++.+|.+.......++..+..
T Consensus 122 ~~~~~~l~~~---------l~~~~~~L~-~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~ 191 (319)
T cd00116 122 DRGLRLLAKG---------LKDLPPALE-KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA 191 (319)
T ss_pred hHHHHHHHHH---------HHhCCCCce-EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh
Confidence 1100000000 0001 3444 566666553311 11233344566788888888886553111111112334
Q ss_pred CCCcCEEEEecCcCCccccc---hHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccccccc
Q 045653 159 FQSLTRLVVSNCHKLKYLFS---ASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFY 235 (272)
Q Consensus 159 l~~L~~L~i~~c~~l~~l~~---~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 235 (272)
+++|++|++++|. +.+... ...+..+++|++|++++|. +............ ....+.|++|++++| .+++..
T Consensus 192 ~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~--~~~~~~L~~L~l~~n-~i~~~~ 266 (319)
T cd00116 192 NCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASAL--LSPNISLLTLSLSCN-DITDDG 266 (319)
T ss_pred CCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHH--hccCCCceEEEccCC-CCCcHH
Confidence 5688888888864 332211 1234567788888888874 4321100000000 001368888888887 443211
Q ss_pred CC---CccccCCCcCEEeecCCC
Q 045653 236 PG---MHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 236 ~~---~~~~~~~~L~~L~i~~c~ 255 (272)
.. .....++.|++++++++.
T Consensus 267 ~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 267 AKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHHHhcCCCccEEECCCCC
Confidence 10 011445778888888763
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.02 E-value=7.6e-07 Score=83.65 Aligned_cols=113 Identities=22% Similarity=0.246 Sum_probs=65.3
Q ss_pred ccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeec
Q 045653 125 FNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIIS 204 (272)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 204 (272)
+..+..+++||.|+++++++..+... .+.+++.|++|.+++ ++++.+ | .....+..|+.|.-++. .|..++
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas----~~~kle~LeeL~LSG-NkL~~L-p-~tva~~~~L~tL~ahsN-~l~~fP- 446 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPAS----KLRKLEELEELNLSG-NKLTTL-P-DTVANLGRLHTLRAHSN-QLLSFP- 446 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHH----HHhchHHhHHHhccc-chhhhh-h-HHHHhhhhhHHHhhcCC-ceeech-
Confidence 34455666666666666655543222 233556666666666 555555 4 34455566665554442 233333
Q ss_pred cCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCC
Q 045653 205 EDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDN 256 (272)
Q Consensus 205 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~ 256 (272)
++..++.|+.++++ |.+|+.+..... ..+|.|++|+++|..+
T Consensus 447 --------e~~~l~qL~~lDlS-~N~L~~~~l~~~-~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 --------ELAQLPQLKVLDLS-CNNLSEVTLPEA-LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred --------hhhhcCcceEEecc-cchhhhhhhhhh-CCCcccceeeccCCcc
Confidence 23335888888885 467776655432 2447899999988775
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=7.8e-07 Score=77.17 Aligned_cols=213 Identities=16% Similarity=0.170 Sum_probs=114.4
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccce--eccccCeEEecCCCCccccccC
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEG--IFAQISCLSLGNLPQLTSFCRE 85 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~ 85 (272)
.+..|++..|++++ +..... ......|+++++|++++.-. ..+.. ..++ +||+|+.|+++. +++..+...
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~-~~~~k~~~~v~~LdLS~NL~-~nw~~----v~~i~eqLp~Le~LNls~-Nrl~~~~~s 190 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGI-EEYSKILPNVRDLDLSRNLF-HNWFP----VLKIAEQLPSLENLNLSS-NRLSNFISS 190 (505)
T ss_pred hHHhhhheeecCcc-ccccch-hhhhhhCCcceeecchhhhH-HhHHH----HHHHHHhcccchhccccc-ccccCCccc
Confidence 45678888888863 222211 12445689999999997411 11110 0111 689999999985 466555443
Q ss_pred ccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEecccc-ceEeccCCCCCCCCCCCCcCE
Q 045653 86 VKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEIN-VEKIWRSQVPAKFPRFQSLTR 164 (272)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~i~~~~~~~~~~~l~~L~~ 164 (272)
..... +++++ .+.+..|+-.-. .+....-.+|+|+.|++.+++ +.. ...+ ..-+..|+.
T Consensus 191 ~~~~~------------l~~lK-~L~l~~CGls~k--~V~~~~~~fPsl~~L~L~~N~~~~~---~~~~--~~i~~~L~~ 250 (505)
T KOG3207|consen 191 NTTLL------------LSHLK-QLVLNSCGLSWK--DVQWILLTFPSLEVLYLEANEIILI---KATS--TKILQTLQE 250 (505)
T ss_pred cchhh------------hhhhh-eEEeccCCCCHH--HHHHHHHhCCcHHHhhhhcccccce---ecch--hhhhhHHhh
Confidence 32221 44555 666666654311 111123457888888887772 211 1111 123677888
Q ss_pred EEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCC
Q 045653 165 LVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWP 244 (272)
Q Consensus 165 L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 244 (272)
|++++.+-+ +.........+|.|..|++..| .+.++...+.. .......||+|+.|++... ++.++..-.+...++
T Consensus 251 LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~-s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~ 326 (505)
T KOG3207|consen 251 LDLSNNNLI-DFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVE-SLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLE 326 (505)
T ss_pred ccccCCccc-ccccccccccccchhhhhcccc-CcchhcCCCcc-chhhhcccccceeeecccC-ccccccccchhhccc
Confidence 888774433 3212234566778888777776 35444322221 1123455788888888763 454443322223445
Q ss_pred CcCEEeec
Q 045653 245 TLQSLEAT 252 (272)
Q Consensus 245 ~L~~L~i~ 252 (272)
+|+.|.+.
T Consensus 327 nlk~l~~~ 334 (505)
T KOG3207|consen 327 NLKHLRIT 334 (505)
T ss_pred hhhhhhcc
Confidence 55555543
No 23
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.91 E-value=4.4e-07 Score=82.37 Aligned_cols=63 Identities=25% Similarity=0.355 Sum_probs=36.1
Q ss_pred CCCccEEEeccc-cceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653 131 LPKLEALELHEI-NVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC 196 (272)
Q Consensus 131 l~~L~~L~L~~~-~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 196 (272)
+++|+.|.+.+| .++. ..+..+...+++|++|++++|..+++........++++|+.+.+..+
T Consensus 268 c~~L~~L~l~~c~~lt~---~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTD---EGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred CCCcceEccCCCCccch---hHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 677777777666 3332 22222334567788888887777755422233455666666554443
No 24
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.88 E-value=5.3e-05 Score=48.42 Aligned_cols=40 Identities=33% Similarity=0.415 Sum_probs=33.4
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCc
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCH 171 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~ 171 (272)
+..+++|+.|+++++++..+.++ .+..+++|++|++.+++
T Consensus 21 f~~l~~L~~L~l~~N~l~~i~~~----~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 21 FSNLPNLETLDLSNNNLTSIPPD----AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTTGTTESEEEETSSSESEEETT----TTTTSTTESEEEETSSS
T ss_pred HcCCCCCCEeEccCCccCccCHH----HHcCCCCCCEEeCcCCc
Confidence 46789999999999988886555 46789999999998864
No 25
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=5.2e-07 Score=74.81 Aligned_cols=89 Identities=21% Similarity=0.205 Sum_probs=61.0
Q ss_pred CCccEEEeccc--cceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCcc
Q 045653 132 PKLEALELHEI--NVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAI 209 (272)
Q Consensus 132 ~~L~~L~L~~~--~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 209 (272)
++|++|+|+|| ++.. ..+......+|+|.+|++++|..+++- ....+-.++.|++|+++.|-.+..-. .
T Consensus 286 e~l~~LNlsG~rrnl~~---sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p~~---~-- 356 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQK---SHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIPET---L-- 356 (419)
T ss_pred hhhhhhhhhhhHhhhhh---hHHHHHHHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCChHH---e--
Confidence 68999999998 3432 111112346899999999999998874 44567789999999999996542111 0
Q ss_pred ccCCccCCCccCeeeccccccc
Q 045653 210 QVTPCFVFPRVSTLRLIDLPKL 231 (272)
Q Consensus 210 ~~~~~~~l~~L~~L~l~~c~~l 231 (272)
-+....|+|..|++.+|-.=
T Consensus 357 --~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 357 --LELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred --eeeccCcceEEEEeccccCc
Confidence 11234589999999887543
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.83 E-value=1.1e-05 Score=63.03 Aligned_cols=108 Identities=22% Similarity=0.322 Sum_probs=45.6
Q ss_pred CCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCcc
Q 045653 130 RLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAI 209 (272)
Q Consensus 130 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 209 (272)
.+.+|+.|++++|.++.+ . .+..+++|+.|.+.+ ++++++ +......+|+|++|++++. ++.++..
T Consensus 40 ~l~~L~~L~Ls~N~I~~l--~----~l~~L~~L~~L~L~~-N~I~~i-~~~l~~~lp~L~~L~L~~N-~I~~l~~----- 105 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKL--E----GLPGLPRLKTLDLSN-NRISSI-SEGLDKNLPNLQELYLSNN-KISDLNE----- 105 (175)
T ss_dssp T-TT--EEE-TTS--S----T----T----TT--EEE--S-S---S--CHHHHHH-TT--EEE-TTS----SCCC-----
T ss_pred hhcCCCEEECCCCCCccc--c----CccChhhhhhcccCC-CCCCcc-ccchHHhCCcCCEEECcCC-cCCChHH-----
Confidence 467899999999977764 1 244688999998887 677776 4333356899999998874 4544431
Q ss_pred ccCCccCCCccCeeecccccccccccC--CCccccCCCcCEEeecC
Q 045653 210 QVTPCFVFPRVSTLRLIDLPKLRFFYP--GMHTSEWPTLQSLEATG 253 (272)
Q Consensus 210 ~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~i~~ 253 (272)
......+|+|+.|.+.+.|-- .... ......+|+|+.|+-..
T Consensus 106 -l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 106 -LEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -CGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEE
T ss_pred -hHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEE
Confidence 122344689999999876532 2222 11235678888887543
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.81 E-value=6.1e-07 Score=68.79 Aligned_cols=65 Identities=22% Similarity=0.321 Sum_probs=30.7
Q ss_pred ccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeec
Q 045653 125 FNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICL 195 (272)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 195 (272)
+..+..+|.|+.|++..+++.+ ..+|..|.++..|+-|++.+ +....+ | ...+++++||-|.+.+
T Consensus 95 prgfgs~p~levldltynnl~e---~~lpgnff~m~tlralyl~d-ndfe~l-p-~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNE---NSLPGNFFYMTTLRALYLGD-NDFEIL-P-PDVGKLTNLQILSLRD 159 (264)
T ss_pred ccccCCCchhhhhhcccccccc---ccCCcchhHHHHHHHHHhcC-CCcccC-C-hhhhhhcceeEEeecc
Confidence 3444555555555555554443 23333444455555555544 233322 3 2344555555555554
No 28
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=6e-05 Score=66.34 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=8.5
Q ss_pred CCcCEEEEecCcCCcc
Q 045653 160 QSLTRLVVSNCHKLKY 175 (272)
Q Consensus 160 ~~L~~L~i~~c~~l~~ 175 (272)
++|++|.+.+|..+..
T Consensus 94 ~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 94 EGLEKLTVCHCPEISG 109 (426)
T ss_pred hhhhheEccCcccccc
Confidence 4555555555554443
No 29
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.67 E-value=1.1e-06 Score=79.76 Aligned_cols=69 Identities=30% Similarity=0.354 Sum_probs=50.8
Q ss_pred CCCCCccEEEecccc-ceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcc
Q 045653 129 VRLPKLEALELHEIN-VEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLL 200 (272)
Q Consensus 129 ~~l~~L~~L~L~~~~-l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~ 200 (272)
..+++|+.|++..+. +..+.-.. ....+++|++|.+.+|..+++..-......+++|++|++++|..++
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~---l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSA---LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHH---HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 456889999999883 44421111 1224899999999999987776445566789999999999998873
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.60 E-value=5.8e-05 Score=59.08 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=7.3
Q ss_pred CCCcCEEEEecCcCCccccchHHHhccccCcEEEeec
Q 045653 159 FQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICL 195 (272)
Q Consensus 159 l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 195 (272)
+.+|+.|++++ +.++.+ +.+..++.|+.|++++
T Consensus 41 l~~L~~L~Ls~-N~I~~l---~~l~~L~~L~~L~L~~ 73 (175)
T PF14580_consen 41 LDKLEVLDLSN-NQITKL---EGLPGLPRLKTLDLSN 73 (175)
T ss_dssp -TT--EEE-TT-S--S-----TT----TT--EEE--S
T ss_pred hcCCCEEECCC-CCCccc---cCccChhhhhhcccCC
Confidence 34444444444 233333 2334444444444444
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=2e-05 Score=68.66 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=62.0
Q ss_pred CCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCcc
Q 045653 130 RLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAI 209 (272)
Q Consensus 130 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 209 (272)
.+++|+.|.|.+|++. |-+. ......+|+|+.|++.+...+.. ....-..+..|++|++++.+.+..-
T Consensus 195 ~l~~lK~L~l~~CGls--~k~V-~~~~~~fPsl~~L~L~~N~~~~~--~~~~~~i~~~L~~LdLs~N~li~~~------- 262 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLS--WKDV-QWILLTFPSLEVLYLEANEIILI--KATSTKILQTLQELDLSNNNLIDFD------- 262 (505)
T ss_pred hhhhhheEEeccCCCC--HHHH-HHHHHhCCcHHHhhhhcccccce--ecchhhhhhHHhhccccCCcccccc-------
Confidence 4566777777776443 1111 11222466777776665432211 1112234566777777765433211
Q ss_pred ccCCccCCCccCeeecccccccccccCCC-----ccccCCCcCEEeecCCC
Q 045653 210 QVTPCFVFPRVSTLRLIDLPKLRFFYPGM-----HTSEWPTLQSLEATGCD 255 (272)
Q Consensus 210 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~-----~~~~~~~L~~L~i~~c~ 255 (272)
+...+..||.|..|++..+ ++.++-... ....+++|++|.+...+
T Consensus 263 ~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 263 QGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc
Confidence 1123456788999888876 555554322 23578999999987664
No 32
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.44 E-value=2e-06 Score=74.17 Aligned_cols=112 Identities=22% Similarity=0.273 Sum_probs=84.5
Q ss_pred ccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCccee
Q 045653 123 TLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGI 202 (272)
Q Consensus 123 ~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 202 (272)
.+|+.+..+.+|+-|++..+++.. . | .|+++..|+++++.. +.+..+ |.+....+++|..|++.+. ++.++
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~~-l----P-ef~gcs~L~Elh~g~-N~i~~l-pae~~~~L~~l~vLDLRdN-klke~ 267 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIRF-L----P-EFPGCSLLKELHVGE-NQIEML-PAEHLKHLNSLLVLDLRDN-KLKEV 267 (565)
T ss_pred cCChhhcchhhhHHHHhhhccccc-C----C-CCCccHHHHHHHhcc-cHHHhh-HHHHhcccccceeeecccc-ccccC
Confidence 677778888999999999987776 2 2 366889999998876 555555 8788888999999999985 67777
Q ss_pred eccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653 203 ISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 203 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 255 (272)
+ ++ +..+.+|+.|++++ ..++.++... +++ .|+.|.+.|.|
T Consensus 268 P--de------~clLrsL~rLDlSN-N~is~Lp~sL--gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 268 P--DE------ICLLRSLERLDLSN-NDISSLPYSL--GNL-HLKFLALEGNP 308 (565)
T ss_pred c--hH------HHHhhhhhhhcccC-CccccCCccc--ccc-eeeehhhcCCc
Confidence 7 22 33357788899887 4777777766 666 77778777765
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.43 E-value=0.00012 Score=71.01 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=10.4
Q ss_pred HhccccCcEEEeecCCC
Q 045653 182 IRSVEQLQHLDICLCKG 198 (272)
Q Consensus 182 ~~~l~~L~~L~i~~c~~ 198 (272)
...+.+|+.|.|.+|..
T Consensus 713 ~~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 713 LGSLGNLEELSILDCGI 729 (889)
T ss_pred cccccCcceEEEEcCCC
Confidence 34566666666666654
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.40 E-value=1.7e-05 Score=68.36 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=53.0
Q ss_pred CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653 4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC 83 (272)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 83 (272)
+|.+--+.-+++.|+. ..++.+. +...+.+++|++|+++.. ++..+.++... .+++|..|.+.+-.++++++
T Consensus 61 VP~~LP~~tveirLdq-N~I~~iP--~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~----GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQ-NQISSIP--PGAFKTLHRLRRLDLSKN-NISFIAPDAFK----GLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CcccCCCcceEEEecc-CCcccCC--hhhccchhhhceeccccc-chhhcChHhhh----hhHhhhHHHhhcCCchhhhh
Confidence 3444445677788875 4555552 244567899999999986 56666665544 47888888888888999988
Q ss_pred cCccc
Q 045653 84 REVKR 88 (272)
Q Consensus 84 ~~~~~ 88 (272)
.+...
T Consensus 133 k~~F~ 137 (498)
T KOG4237|consen 133 KGAFG 137 (498)
T ss_pred hhHhh
Confidence 76444
No 35
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.40 E-value=2.1e-05 Score=74.26 Aligned_cols=87 Identities=30% Similarity=0.473 Sum_probs=63.7
Q ss_pred CCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccccccc
Q 045653 156 FPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFY 235 (272)
Q Consensus 156 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 235 (272)
+.++++|+.|++.| +++... |...+.++..|++|+++|. +++.++ +.... +++|++|...+ .++..+|
T Consensus 379 l~~~~hLKVLhLsy-NrL~~f-pas~~~kle~LeeL~LSGN-kL~~Lp--~tva~------~~~L~tL~ahs-N~l~~fP 446 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSY-NRLNSF-PASKLRKLEELEELNLSGN-KLTTLP--DTVAN------LGRLHTLRAHS-NQLLSFP 446 (1081)
T ss_pred hccccceeeeeecc-cccccC-CHHHHhchHHhHHHhcccc-hhhhhh--HHHHh------hhhhHHHhhcC-Cceeech
Confidence 55678888888888 666655 7778888888888888884 566666 32222 38888888765 4787887
Q ss_pred CCCccccCCCcCEEeecCCCCCc
Q 045653 236 PGMHTSEWPTLQSLEATGCDNLK 258 (272)
Q Consensus 236 ~~~~~~~~~~L~~L~i~~c~~l~ 258 (272)
. . ..++.|+.++++ |.+|+
T Consensus 447 e-~--~~l~qL~~lDlS-~N~L~ 465 (1081)
T KOG0618|consen 447 E-L--AQLPQLKVLDLS-CNNLS 465 (1081)
T ss_pred h-h--hhcCcceEEecc-cchhh
Confidence 3 3 578899999987 66665
No 36
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=4.9e-05 Score=71.85 Aligned_cols=91 Identities=19% Similarity=0.212 Sum_probs=54.0
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT 207 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 207 (272)
..+||+|..|+|++++++.++ +...+++|+.|.+++.+--..- --..+-+|++|+.|||+.=.....-....
T Consensus 169 c~sFpNL~sLDIS~TnI~nl~------GIS~LknLq~L~mrnLe~e~~~-~l~~LF~L~~L~vLDIS~~~~~~~~~ii~- 240 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNLS------GISRLKNLQVLSMRNLEFESYQ-DLIDLFNLKKLRVLDISRDKNNDDTKIIE- 240 (699)
T ss_pred hhccCccceeecCCCCccCcH------HHhccccHHHHhccCCCCCchh-hHHHHhcccCCCeeeccccccccchHHHH-
Confidence 357889999999988776641 3446888888888774432211 11345578888888888643322210000
Q ss_pred ccccCCccCCCccCeeeccc
Q 045653 208 AIQVTPCFVFPRVSTLRLID 227 (272)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~ 227 (272)
...+....+|.||.|+.++
T Consensus 241 -qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 241 -QYLECGMVLPELRFLDCSG 259 (699)
T ss_pred -HHHHhcccCccccEEecCC
Confidence 1112223368888888774
No 37
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.29 E-value=8.1e-07 Score=76.49 Aligned_cols=131 Identities=18% Similarity=0.156 Sum_probs=78.0
Q ss_pred ccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCccee
Q 045653 123 TLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGI 202 (272)
Q Consensus 123 ~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 202 (272)
++++.+..+.+|.+|.+.++++++..++ ...++.|++|+... +-++.+ |+ .++++.+|+.|++... ++..+
T Consensus 151 slp~~~~~~~~l~~l~~~~n~l~~l~~~-----~i~m~~L~~ld~~~-N~L~tl-P~-~lg~l~~L~~LyL~~N-ki~~l 221 (565)
T KOG0472|consen 151 SLPEDMVNLSKLSKLDLEGNKLKALPEN-----HIAMKRLKHLDCNS-NLLETL-PP-ELGGLESLELLYLRRN-KIRFL 221 (565)
T ss_pred cCchHHHHHHHHHHhhccccchhhCCHH-----HHHHHHHHhcccch-hhhhcC-Ch-hhcchhhhHHHHhhhc-ccccC
Confidence 4555556666777777777766553222 22355666655433 233333 43 3455555555555442 23333
Q ss_pred eccCCc-------------c--ccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCccccccccc
Q 045653 203 ISEDTA-------------I--QVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSELSS 266 (272)
Q Consensus 203 ~~~~~~-------------~--~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~ 266 (272)
+..++- + ..+....++++..|++.. .++++.|.+. .-+.+|++|++++. .++++|....+
T Consensus 222 Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~--clLrsL~rLDlSNN-~is~Lp~sLgn 296 (565)
T KOG0472|consen 222 PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEI--CLLRSLERLDLSNN-DISSLPYSLGN 296 (565)
T ss_pred CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHH--HHhhhhhhhcccCC-ccccCCccccc
Confidence 321111 0 001234679999999988 5999999987 66889999999965 68888877654
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=1.6e-05 Score=66.19 Aligned_cols=124 Identities=18% Similarity=0.223 Sum_probs=77.3
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT 207 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 207 (272)
+..+.+|+.|.|.|.++.+-... .+..-.+|+.|++..|.+++.-...-.+.++..|++|++++|...++... -.
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~----~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt-v~ 280 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVN----TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT-VA 280 (419)
T ss_pred HHHHHhhhhccccccccCcHHHH----HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh-HH
Confidence 45677788888887755431111 12246889999999999998765555778999999999999976544321 00
Q ss_pred cccc---------------------C-CccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCC
Q 045653 208 AIQV---------------------T-PCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNL 257 (272)
Q Consensus 208 ~~~~---------------------~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l 257 (272)
..+. + -....|+|.+|+++.|..++.-... ..-.++.|++|.++.|..+
T Consensus 281 V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 281 VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-HHHhcchheeeehhhhcCC
Confidence 0000 0 0112367777777777666652211 1135677788888777754
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.03 E-value=0.00022 Score=59.74 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=58.6
Q ss_pred CCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeec-------
Q 045653 132 PKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIIS------- 204 (272)
Q Consensus 132 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~------- 204 (272)
..|++++++++.++.| ++. +.-.|.++.|.+++ +++..+ ..++.+++|++|++++. .+.++-.
T Consensus 284 q~LtelDLS~N~I~~i-DES----vKL~Pkir~L~lS~-N~i~~v---~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 284 QELTELDLSGNLITQI-DES----VKLAPKLRRLILSQ-NRIRTV---QNLAELPQLQLLDLSGN-LLAECVGWHLKLGN 353 (490)
T ss_pred hhhhhccccccchhhh-hhh----hhhccceeEEeccc-cceeee---hhhhhcccceEeecccc-hhHhhhhhHhhhcC
Confidence 3455666666544442 121 22345566666655 344444 23455566666666553 1211100
Q ss_pred -------cCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653 205 -------EDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 205 -------~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 255 (272)
...++...+..-+-+|..|++++ .+++.+..-.+.+.+|+|+.+.+.+.|
T Consensus 354 IKtL~La~N~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 354 IKTLKLAQNKIETLSGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred EeeeehhhhhHhhhhhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC
Confidence 00011112233446778888876 366666654444788999999888876
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.62 E-value=0.0024 Score=37.74 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=25.2
Q ss_pred CccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccc
Q 045653 218 PRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFG 261 (272)
Q Consensus 218 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~ 261 (272)
++|+.|+++++ ++++++... ..++.|+.|+++++ .+++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l--~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPEL--SNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHG--TTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCC-CCcccCchH--hCCCCCCEEEecCC-CCCCCc
Confidence 45777777765 676766544 57777777777777 465543
No 41
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.00039 Score=54.85 Aligned_cols=70 Identities=21% Similarity=0.365 Sum_probs=52.4
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcccc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSF 82 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 82 (272)
.++.++.|.+.+|.++.+++..... +-+++|+.|+|++|+.++..+..... .|++|+.|.+++.+.+.+.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~GL~~L~----~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGGLACLL----KLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhHHHHHH----HhhhhHHHHhcCchhhhch
Confidence 4577889999999999999754322 25799999999999998865432111 6889999999988766553
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.23 E-value=0.00058 Score=57.24 Aligned_cols=58 Identities=22% Similarity=0.340 Sum_probs=26.7
Q ss_pred CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeec
Q 045653 129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICL 195 (272)
Q Consensus 129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 195 (272)
..+++|..|+++++.+.++ .+ |...+-+.+.|.+.. +.+.++ +.++.+-+|..|++.+
T Consensus 326 a~L~~L~~LDLS~N~Ls~~-~G----wh~KLGNIKtL~La~-N~iE~L---SGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 326 AELPQLQLLDLSGNLLAEC-VG----WHLKLGNIKTLKLAQ-NKIETL---SGLRKLYSLVNLDLSS 383 (490)
T ss_pred hhcccceEeecccchhHhh-hh----hHhhhcCEeeeehhh-hhHhhh---hhhHhhhhheeccccc
Confidence 3445555555555533321 11 122345555555554 334444 3444555555555554
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.22 E-value=0.0015 Score=62.02 Aligned_cols=112 Identities=18% Similarity=0.176 Sum_probs=67.7
Q ss_pred CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCc
Q 045653 129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTA 208 (272)
Q Consensus 129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 208 (272)
..||+|+.|.+.+-.+..-+ ......+||+|.+|+|+++ .++++ .+.+.+++|+.|.+.+.. ++. .
T Consensus 145 ~~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~T-nI~nl---~GIS~LknLq~L~mrnLe-~e~------~ 210 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGT-NISNL---SGISRLKNLQVLSMRNLE-FES------Y 210 (699)
T ss_pred hhCcccceEEecCceecchh---HHHHhhccCccceeecCCC-CccCc---HHHhccccHHHHhccCCC-CCc------h
Confidence 46899999998886332211 1112446899999999884 45566 567888888888877652 211 1
Q ss_pred cccCCccCCCccCeeecccccccccc--cCCC--ccccCCCcCEEeecCC
Q 045653 209 IQVTPCFVFPRVSTLRLIDLPKLRFF--YPGM--HTSEWPTLQSLEATGC 254 (272)
Q Consensus 209 ~~~~~~~~l~~L~~L~l~~c~~l~~~--~~~~--~~~~~~~L~~L~i~~c 254 (272)
.+...+..+.+|+.|+++.-++.... .... ....+|.|+.|+.++-
T Consensus 211 ~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 211 QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 11112344689999999865443332 1100 1145788888887743
No 44
>PLN03150 hypothetical protein; Provisional
Probab=96.08 E-value=0.013 Score=55.49 Aligned_cols=113 Identities=14% Similarity=0.163 Sum_probs=67.3
Q ss_pred ccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCC
Q 045653 134 LEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTP 213 (272)
Q Consensus 134 L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 213 (272)
++.|+|.++.+... +|..+..+++|+.|++.++. +...+| ..+..+++|+.|+++++. +....+ + .
T Consensus 420 v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~-l~g~iP-~~~~~l~~L~~LdLs~N~-lsg~iP-~------~ 485 (623)
T PLN03150 420 IDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNS-IRGNIP-PSLGSITSLEVLDLSYNS-FNGSIP-E------S 485 (623)
T ss_pred EEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCc-ccCcCC-hHHhCCCCCCEEECCCCC-CCCCCc-h------H
Confidence 66777777755432 23345578888888888754 333324 356788888888888863 432221 1 1
Q ss_pred ccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccc
Q 045653 214 CFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFG 261 (272)
Q Consensus 214 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~ 261 (272)
+..+++|+.|+++++.--..+|.... .....+..+++.+++.+...|
T Consensus 486 l~~L~~L~~L~Ls~N~l~g~iP~~l~-~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 486 LGQLTSLRILNLNGNSLSGRVPAALG-GRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred HhcCCCCCEEECcCCcccccCChHHh-hccccCceEEecCCccccCCC
Confidence 23358888888887654445554331 122355677777766655443
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.60 E-value=0.014 Score=51.79 Aligned_cols=106 Identities=18% Similarity=0.251 Sum_probs=53.1
Q ss_pred CCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCcc
Q 045653 130 RLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAI 209 (272)
Q Consensus 130 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 209 (272)
..++|+.|+++++++..+... ......|+++.+.+-+.+..+ ..+..+..+..+.+.+. .+..++ .
T Consensus 184 ~~~~L~~L~ls~N~i~~l~~~-----~~~~~~L~~l~~~~N~~~~~~---~~~~~~~~l~~l~l~~n-~~~~~~--~--- 249 (394)
T COG4886 184 NLSNLNNLDLSGNKISDLPPE-----IELLSALEELDLSNNSIIELL---SSLSNLKNLSGLELSNN-KLEDLP--E--- 249 (394)
T ss_pred hhhhhhheeccCCccccCchh-----hhhhhhhhhhhhcCCcceecc---hhhhhcccccccccCCc-eeeecc--c---
Confidence 456666666666655542211 112334666666653322222 23445555555543221 222211 1
Q ss_pred ccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCC
Q 045653 210 QVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDN 256 (272)
Q Consensus 210 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~ 256 (272)
....+++++.|++++. .+++++. . ....+++.|++++-.-
T Consensus 250 ---~~~~l~~l~~L~~s~n-~i~~i~~-~--~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 250 ---SIGNLSNLETLDLSNN-QISSISS-L--GSLTNLRELDLSGNSL 289 (394)
T ss_pred ---hhccccccceeccccc-ccccccc-c--cccCccCEEeccCccc
Confidence 1222366777777664 6666655 2 4667777777776433
No 46
>PLN03150 hypothetical protein; Provisional
Probab=95.53 E-value=0.029 Score=53.10 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=52.5
Q ss_pred ccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCC
Q 045653 123 TLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCK 197 (272)
Q Consensus 123 ~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 197 (272)
.++..+..+++|+.|+|.+|++... +|..+..+++|+.|++.++.--..+ | ..+.++++|+.|+++++.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~LdLs~N~lsg~i-P-~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGN----IPPSLGSITSLEVLDLSYNSFNGSI-P-ESLGQLTSLRILNLNGNS 501 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCc----CChHHhCCCCCCEEECCCCCCCCCC-c-hHHhcCCCCCEEECcCCc
Confidence 3455567889999999999977642 3334668999999999986443333 4 567899999999999874
No 47
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.42 E-value=0.0072 Score=52.58 Aligned_cols=88 Identities=24% Similarity=0.366 Sum_probs=66.2
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT 207 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 207 (272)
+..+|+|++|+++++.++.|-++ +|.....+++|.+.. +++..+ ....+.++..|+.|++.+. +|+-+.+ +
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~----aFe~~a~l~eL~L~~-N~l~~v-~~~~f~~ls~L~tL~L~~N-~it~~~~--~ 340 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDG----AFEGAAELQELYLTR-NKLEFV-SSGMFQGLSGLKTLSLYDN-QITTVAP--G 340 (498)
T ss_pred HhhcccceEeccCCCccchhhhh----hhcchhhhhhhhcCc-chHHHH-HHHhhhccccceeeeecCC-eeEEEec--c
Confidence 57899999999999988876555 577889999999987 677776 6678889999999999985 5766652 2
Q ss_pred ccccCCccCCCccCeeeccccc
Q 045653 208 AIQVTPCFVFPRVSTLRLIDLP 229 (272)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~c~ 229 (272)
. ...+.+|.+|++-..+
T Consensus 341 a-----F~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 341 A-----FQTLFSLSTLNLLSNP 357 (498)
T ss_pred c-----ccccceeeeeehccCc
Confidence 2 1123677777775443
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.38 E-value=0.022 Score=33.62 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=16.2
Q ss_pred CcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653 161 SLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC 196 (272)
Q Consensus 161 ~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 196 (272)
+|++|++.+ ..++++ ++ .+.++++|+.|+++++
T Consensus 2 ~L~~L~l~~-N~i~~l-~~-~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSN-NQITDL-PP-ELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETS-SS-SSH-GG-HGTTCTTSSEEEETSS
T ss_pred cceEEEccC-CCCccc-Cc-hHhCCCCCCEEEecCC
Confidence 455555555 344444 32 2455666666666655
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.36 E-value=0.00088 Score=62.39 Aligned_cols=59 Identities=27% Similarity=0.319 Sum_probs=43.1
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeec
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICL 195 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 195 (272)
+.++++|+.|+|+.+.+..+... ....+. |+.|.+++ +.++.+ ..+.++.+|+.|++++
T Consensus 205 Lr~l~~LkhLDlsyN~L~~vp~l----~~~gc~-L~~L~lrn-N~l~tL---~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNCLRHVPQL----SMVGCK-LQLLNLRN-NALTTL---RGIENLKSLYGLDLSY 263 (1096)
T ss_pred HHhcccccccccccchhcccccc----chhhhh-heeeeecc-cHHHhh---hhHHhhhhhhccchhH
Confidence 46789999999998866653222 122455 88888887 666666 5678899999999987
No 50
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.81 E-value=0.0089 Score=47.36 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=55.2
Q ss_pred CccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeec
Q 045653 173 LKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEAT 252 (272)
Q Consensus 173 l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~ 252 (272)
+... +...+.++++++.|.+.+|..+.+-. .+... ...|+|+.|+|++|+++++-...- ...+++|+.|.+.
T Consensus 113 I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~----L~~l~--~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 113 IMYE-GLEHLRDLRSIKSLSLANCKYFDDWC----LERLG--GLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLY 184 (221)
T ss_pred HHHH-HHHHHhccchhhhheeccccchhhHH----HHHhc--ccccchheeeccCCCeechhHHHH-HHHhhhhHHHHhc
Confidence 3344 55667788999999999997664432 21111 135999999999999999876532 2468899999998
Q ss_pred CCCCCc
Q 045653 253 GCDNLK 258 (272)
Q Consensus 253 ~c~~l~ 258 (272)
+.+...
T Consensus 185 ~l~~v~ 190 (221)
T KOG3864|consen 185 DLPYVA 190 (221)
T ss_pred Cchhhh
Confidence 876543
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.61 E-value=0.058 Score=42.91 Aligned_cols=89 Identities=19% Similarity=0.226 Sum_probs=56.2
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEec--CcCCccccchHHHhccccCcEEEeecCCCcceeecc
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSN--CHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISE 205 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~--c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 205 (272)
+-+++.|..|.+.++++..|-+.- ...+++|..|.+.+ ..++.++ ..+..+|+|++|.+.+.+ +++-..
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L----~~~~p~l~~L~LtnNsi~~l~dl---~pLa~~p~L~~Ltll~Np-v~~k~~- 130 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDL----DTFLPNLKTLILTNNSIQELGDL---DPLASCPKLEYLTLLGNP-VEHKKN- 130 (233)
T ss_pred CCCccccceEEecCCcceeeccch----hhhccccceEEecCcchhhhhhc---chhccCCccceeeecCCc-hhcccC-
Confidence 356788888899888888765542 23578888888886 2334444 456788889998888754 322221
Q ss_pred CCccccCCccCCCccCeeecccc
Q 045653 206 DTAIQVTPCFVFPRVSTLRLIDL 228 (272)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~c 228 (272)
...+ .+..+|+|+.|++..-
T Consensus 131 -YR~y--vl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 131 -YRLY--VLYKLPSLRTLDFQKV 150 (233)
T ss_pred -ceeE--EEEecCcceEeehhhh
Confidence 0111 1233588888887643
No 52
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.96 E-value=0.045 Score=25.12 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=7.1
Q ss_pred CcCEEeecCCCCCcccc
Q 045653 245 TLQSLEATGCDNLKIFG 261 (272)
Q Consensus 245 ~L~~L~i~~c~~l~~l~ 261 (272)
+|+.|++++|. ++++|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45666666665 55543
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.58 E-value=0.046 Score=48.58 Aligned_cols=60 Identities=27% Similarity=0.408 Sum_probs=33.9
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC 196 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 196 (272)
+..+.++..+.+.++++..+ +.....++++++|++.+ +.+.++ + .+..+.+|+.|++++.
T Consensus 228 ~~~~~~l~~l~l~~n~~~~~-----~~~~~~l~~l~~L~~s~-n~i~~i-~--~~~~~~~l~~L~~s~n 287 (394)
T COG4886 228 LSNLKNLSGLELSNNKLEDL-----PESIGNLSNLETLDLSN-NQISSI-S--SLGSLTNLRELDLSGN 287 (394)
T ss_pred hhhcccccccccCCceeeec-----cchhccccccceecccc-cccccc-c--cccccCccCEEeccCc
Confidence 34555666666555544331 11233566677777776 445555 2 2566777777777764
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.52 E-value=0.18 Score=40.24 Aligned_cols=108 Identities=17% Similarity=0.304 Sum_probs=73.6
Q ss_pred CCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccc
Q 045653 131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQ 210 (272)
Q Consensus 131 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 210 (272)
......+++.++++..+ . .++.++.|..|.+.+ ++++.+ .+....-+++|+.|.+.+. +++++..-+.
T Consensus 41 ~d~~d~iDLtdNdl~~l--~----~lp~l~rL~tLll~n-NrIt~I-~p~L~~~~p~l~~L~LtnN-si~~l~dl~p--- 108 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--D----NLPHLPRLHTLLLNN-NRITRI-DPDLDTFLPNLKTLILTNN-SIQELGDLDP--- 108 (233)
T ss_pred ccccceecccccchhhc--c----cCCCccccceEEecC-Ccceee-ccchhhhccccceEEecCc-chhhhhhcch---
Confidence 34667788888866542 1 355789999999987 788888 5466777899999999984 5766653333
Q ss_pred cCCccCCCccCeeecccccccccccC--CCccccCCCcCEEeecCC
Q 045653 211 VTPCFVFPRVSTLRLIDLPKLRFFYP--GMHTSEWPTLQSLEATGC 254 (272)
Q Consensus 211 ~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~i~~c 254 (272)
...+|+|+.|.+-+.+ .+.-.. ......+|+|+.|++.+-
T Consensus 109 ---La~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 109 ---LASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ---hccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 3345999999887642 222221 223356788888887753
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.34 E-value=0.0021 Score=53.39 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=60.1
Q ss_pred CCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccc
Q 045653 131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQ 210 (272)
Q Consensus 131 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 210 (272)
+.+.++|+..||.+..|. +...++.|+.|.++= ++++.+ ..+..|++|++|.+... .|..+- ...+
T Consensus 18 l~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSv-NkIssL---~pl~rCtrLkElYLRkN-~I~sld---EL~Y 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSV-NKISSL---APLQRCTRLKELYLRKN-CIESLD---ELEY 83 (388)
T ss_pred HHHhhhhcccCCCccHHH------HHHhcccceeEEeec-cccccc---hhHHHHHHHHHHHHHhc-ccccHH---HHHH
Confidence 456778888888666542 122567788887764 566666 44677888888877752 233221 1111
Q ss_pred cCCccCCCccCeeecccccccccccC---CCccccCCCcCEEe
Q 045653 211 VTPCFVFPRVSTLRLIDLPKLRFFYP---GMHTSEWPTLQSLE 250 (272)
Q Consensus 211 ~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~~~~L~~L~ 250 (272)
+..+|+|++|+|...+.-..-+. ......+|+|++|+
T Consensus 84 ---LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 84 ---LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ---HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 23458888888876655433322 11224567777775
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.90 E-value=0.06 Score=44.34 Aligned_cols=111 Identities=16% Similarity=0.237 Sum_probs=62.0
Q ss_pred CCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecC--cCCccccchHHHhccccCcEEEeecCCCcceeeccCCc
Q 045653 131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNC--HKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTA 208 (272)
Q Consensus 131 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c--~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 208 (272)
+.+|+.|++.++.+..+. .++.+++|++|.+++. .-...+ . .....+|+|+++++++. ++..+.
T Consensus 42 ~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l-~-vl~e~~P~l~~l~ls~N-ki~~ls----- 107 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGL-E-VLAEKAPNLKVLNLSGN-KIKDLS----- 107 (260)
T ss_pred ccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccc-e-ehhhhCCceeEEeecCC-cccccc-----
Confidence 455666666666555421 3456788888888764 222222 1 23456688888888874 343322
Q ss_pred cccCCccCCCccCeeecccccccccccC--CCccccCCCcCEEeecCCCCC
Q 045653 209 IQVTPCFVFPRVSTLRLIDLPKLRFFYP--GMHTSEWPTLQSLEATGCDNL 257 (272)
Q Consensus 209 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~i~~c~~l 257 (272)
...+...+.+|.+|++.+|+-.. +.. ..++.-+++|.+|+-.++..-
T Consensus 108 -tl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 108 -TLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred -ccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCCc
Confidence 11223345778888887775443 222 112345677777776655443
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=92.59 E-value=0.0012 Score=61.46 Aligned_cols=81 Identities=22% Similarity=0.233 Sum_probs=45.3
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT 207 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 207 (272)
+.-+|+|+.|+|+++++..+ . .+..++.|++|+|.+ +.+..+ |.-...++. |+.|.+.+. .++.+. +
T Consensus 183 Lqll~ale~LnLshNk~~~v-~-----~Lr~l~~LkhLDlsy-N~L~~v-p~l~~~gc~-L~~L~lrnN-~l~tL~---g 249 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKV-D-----NLRRLPKLKHLDLSY-NCLRHV-PQLSMVGCK-LQLLNLRNN-ALTTLR---G 249 (1096)
T ss_pred HHHHHHhhhhccchhhhhhh-H-----HHHhccccccccccc-chhccc-cccchhhhh-heeeeeccc-HHHhhh---h
Confidence 45567888888888755542 1 133577888888876 444444 432333444 777777763 233332 2
Q ss_pred ccccCCccCCCccCeeeccc
Q 045653 208 AIQVTPCFVFPRVSTLRLID 227 (272)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~ 227 (272)
++. +.+|+.|+++.
T Consensus 250 ie~------LksL~~LDlsy 263 (1096)
T KOG1859|consen 250 IEN------LKSLYGLDLSY 263 (1096)
T ss_pred HHh------hhhhhccchhH
Confidence 222 35666666654
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.40 E-value=1.6 Score=31.59 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=52.2
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT 207 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 207 (272)
+...++|+.+.+.. .++.|... .+..+++|+.+.+.+ .+..+ +...+.++++|+.+.+.+ .+..+.. ..
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~----~F~~~~~l~~i~~~~--~~~~i-~~~~F~~~~~l~~i~~~~--~~~~i~~-~~ 76 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGEN----AFSNCTSLKSINFPN--NLTSI-GDNAFSNCKSLESITFPN--NLKSIGD-NA 76 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TT----TTTT-TT-SEEEESS--TTSCE--TTTTTT-TT-EEEEETS--TT-EE-T-TT
T ss_pred HhCCCCCCEEEECC-CeeEeChh----hcccccccccccccc--ccccc-ceeeeecccccccccccc--ccccccc-cc
Confidence 35566788888775 34454333 355677888888865 35555 445667777788888854 3444431 11
Q ss_pred ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccc
Q 045653 208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFG 261 (272)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~ 261 (272)
... .++++.+.+.. ++..+..... .++ .++.+.+.+ +++.++
T Consensus 77 F~~------~~~l~~i~~~~--~~~~i~~~~f-~~~-~l~~i~~~~--~~~~i~ 118 (129)
T PF13306_consen 77 FSN------CTNLKNIDIPS--NITEIGSSSF-SNC-NLKEINIPS--NITKIE 118 (129)
T ss_dssp TTT-------TTECEEEETT--T-BEEHTTTT-TT--T--EEE-TT--B-SS--
T ss_pred ccc------cccccccccCc--cccEEchhhh-cCC-CceEEEECC--CccEEC
Confidence 112 37788887743 4555555443 344 777777654 444443
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.34 E-value=0.083 Score=25.94 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=12.7
Q ss_pred CcCEEeecCCCCCccccccc
Q 045653 245 TLQSLEATGCDNLKIFGSEL 264 (272)
Q Consensus 245 ~L~~L~i~~c~~l~~l~~~~ 264 (272)
+|++|++++| +++.+|+++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp TESEEEETSS-EESEEGTTT
T ss_pred CccEEECCCC-cCEeCChhh
Confidence 3677777777 676776653
No 60
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.96 E-value=0.1 Score=26.74 Aligned_cols=17 Identities=35% Similarity=0.800 Sum_probs=13.2
Q ss_pred CCCcCEEeecCCCCCcc
Q 045653 243 WPTLQSLEATGCDNLKI 259 (272)
Q Consensus 243 ~~~L~~L~i~~c~~l~~ 259 (272)
|+.|++|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 56788888888888764
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.31 E-value=0.15 Score=43.16 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=42.0
Q ss_pred CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCccee
Q 045653 129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGI 202 (272)
Q Consensus 129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 202 (272)
..||++..+.+..|.++...... .+..+|.+--|.+.. ..+.+...-..+..+++|..|.+...+-...+
T Consensus 196 r~Fpnv~sv~v~e~PlK~~s~ek---~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGPLKTESSEK---GSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhcccchheeeecCcccchhhcc---cCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 46788888888888666643333 222344444444433 33334433356678888888888876644433
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.21 E-value=0.12 Score=43.68 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=40.1
Q ss_pred ccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653 127 DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC 196 (272)
Q Consensus 127 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 196 (272)
.+.++|+|+.|+|+.+.+.+.. +..| -...+|+.|.+.+ ..+.---....+..+|.+++|+++..
T Consensus 92 ile~lP~l~~LNls~N~L~s~I-~~lp---~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 92 ILEQLPALTTLNLSCNSLSSDI-KSLP---LPLKNLRVLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HHhcCccceEeeccCCcCCCcc-ccCc---ccccceEEEEEcC-CCCChhhhhhhhhcchhhhhhhhccc
Confidence 4568899999999988555421 1122 1367888888876 22211001234567888888888764
No 63
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.89 E-value=0.091 Score=47.15 Aligned_cols=60 Identities=27% Similarity=0.316 Sum_probs=35.5
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC 196 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 196 (272)
+..+.+|+.|++.++.++.+... +..+++|++|++++ +.++++ ..+..++.|+.|++.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~-N~I~~i---~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSF-NKITKL---EGLSTLTLLKELNLSGN 150 (414)
T ss_pred cccccceeeeeccccchhhcccc-----hhhhhcchheeccc-cccccc---cchhhccchhhheeccC
Confidence 34566677777776655553221 22467777777766 555555 34556666777776664
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.34 E-value=1.5 Score=31.76 Aligned_cols=89 Identities=13% Similarity=0.208 Sum_probs=44.9
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT 207 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 207 (272)
+..+++|+.+.+.+. +..+... .+..+++++++.+.+ .+..+ +...+..+++|+.+.+.. ++..+. ..
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~----~F~~~~~l~~i~~~~--~~~~i-~~~~F~~~~~l~~i~~~~--~~~~i~--~~ 98 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDN----AFSNCKSLESITFPN--NLKSI-GDNAFSNCTNLKNIDIPS--NITEIG--SS 98 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TT----TTTT-TT-EEEEETS--TT-EE--TTTTTT-TTECEEEETT--T-BEEH--TT
T ss_pred ccccccccccccccc-cccccee----eeecccccccccccc--ccccc-ccccccccccccccccCc--cccEEc--hh
Confidence 456778999988774 5554333 456777899999965 44455 545677788999998864 355554 22
Q ss_pred ccccCCccCCCccCeeecccccccccccC
Q 045653 208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYP 236 (272)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 236 (272)
.... .+++.+.+.. .++.+..
T Consensus 99 ~f~~------~~l~~i~~~~--~~~~i~~ 119 (129)
T PF13306_consen 99 SFSN------CNLKEINIPS--NITKIEE 119 (129)
T ss_dssp TTTT-------T--EEE-TT--B-SS---
T ss_pred hhcC------CCceEEEECC--CccEECC
Confidence 2111 3566666543 4444443
No 65
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=88.49 E-value=0.11 Score=47.65 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=48.5
Q ss_pred ccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCC
Q 045653 134 LEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTP 213 (272)
Q Consensus 134 L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 213 (272)
|+.|-+++++++.+.. ..+..+.|..|+.++|.. ..+ + ..+.++.+|+.|.+... .+..++.+..
T Consensus 145 Lkvli~sNNkl~~lp~-----~ig~~~tl~~ld~s~nei-~sl-p-sql~~l~slr~l~vrRn-~l~~lp~El~------ 209 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPE-----EIGLLPTLAHLDVSKNEI-QSL-P-SQLGYLTSLRDLNVRRN-HLEDLPEELC------ 209 (722)
T ss_pred ceeEEEecCccccCCc-----ccccchhHHHhhhhhhhh-hhc-h-HHhhhHHHHHHHHHhhh-hhhhCCHHHh------
Confidence 4555555554444211 122355555555555332 233 2 23455555666555542 3444442221
Q ss_pred ccCCCccCeeecccccccccccCCCccccCCCcCEEeecCC
Q 045653 214 CFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGC 254 (272)
Q Consensus 214 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c 254 (272)
. -.|..|+++ |.++..+|..+ .....|++|.+.+.
T Consensus 210 --~-LpLi~lDfS-cNkis~iPv~f--r~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 210 --S-LPLIRLDFS-CNKISYLPVDF--RKMRHLQVLQLENN 244 (722)
T ss_pred --C-Cceeeeecc-cCceeecchhh--hhhhhheeeeeccC
Confidence 1 236666663 35666666655 55566666666544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.24 E-value=0.4 Score=39.57 Aligned_cols=67 Identities=21% Similarity=0.325 Sum_probs=43.5
Q ss_pred CCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCcccc-chHHHhccccCcEEEeecCCCc
Q 045653 130 RLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLF-SASMIRSVEQLQHLDICLCKGL 199 (272)
Q Consensus 130 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-~~~~~~~l~~L~~L~i~~c~~l 199 (272)
.+|+|+.|++++++++.+ ..+. -+..+++|.+|.+.+|......- -...+.-+++|+.|+-.++..-
T Consensus 89 ~~P~l~~l~ls~Nki~~l--stl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIKDL--STLR-PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred hCCceeEEeecCCccccc--cccc-hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence 459999999999865542 2222 23467788888888877654221 2234556788888887776544
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.35 E-value=0.073 Score=44.52 Aligned_cols=82 Identities=15% Similarity=0.192 Sum_probs=58.3
Q ss_pred CCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCC
Q 045653 159 FQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGM 238 (272)
Q Consensus 159 l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 238 (272)
+.+.++|..|+| ++.++ .....++.|+.|.++=. +|..+ .....+ ++|++|.+.. ..+.++....
T Consensus 18 l~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvN-kIssL---~pl~rC------trLkElYLRk-N~I~sldEL~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVN-KISSL---APLQRC------TRLKELYLRK-NCIESLDELE 82 (388)
T ss_pred HHHhhhhcccCC-CccHH---HHHHhcccceeEEeecc-ccccc---hhHHHH------HHHHHHHHHh-cccccHHHHH
Confidence 677889999996 56777 56788999999988742 34333 223333 8899998865 3566665544
Q ss_pred ccccCCCcCEEeecCCC
Q 045653 239 HTSEWPTLQSLEATGCD 255 (272)
Q Consensus 239 ~~~~~~~L~~L~i~~c~ 255 (272)
...++|+|+.|++...|
T Consensus 83 YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENP 99 (388)
T ss_pred HHhcCchhhhHhhccCC
Confidence 44789999999987754
No 68
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=82.99 E-value=0.23 Score=45.63 Aligned_cols=87 Identities=22% Similarity=0.355 Sum_probs=50.6
Q ss_pred ccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCccee
Q 045653 123 TLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGI 202 (272)
Q Consensus 123 ~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 202 (272)
.++......++|..|+.+.|++..+ |+.+.++.+|+.|.++. +.+.++ |++.. .|+ |-.|+++ |+++..+
T Consensus 157 ~lp~~ig~~~tl~~ld~s~nei~sl-----psql~~l~slr~l~vrR-n~l~~l-p~El~-~Lp-Li~lDfS-cNkis~i 226 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNEIQSL-----PSQLGYLTSLRDLNVRR-NHLEDL-PEELC-SLP-LIRLDFS-CNKISYL 226 (722)
T ss_pred cCCcccccchhHHHhhhhhhhhhhc-----hHHhhhHHHHHHHHHhh-hhhhhC-CHHHh-CCc-eeeeecc-cCceeec
Confidence 5566666778888888888866552 22355677777777765 444455 44322 332 5566665 5566666
Q ss_pred eccCCccccCCccCCCccCeeeccc
Q 045653 203 ISEDTAIQVTPCFVFPRVSTLRLID 227 (272)
Q Consensus 203 ~~~~~~~~~~~~~~l~~L~~L~l~~ 227 (272)
+. .... +..|+.|-+.+
T Consensus 227 Pv--~fr~------m~~Lq~l~Len 243 (722)
T KOG0532|consen 227 PV--DFRK------MRHLQVLQLEN 243 (722)
T ss_pred ch--hhhh------hhhheeeeecc
Confidence 62 2222 25566666654
No 69
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=82.65 E-value=0.33 Score=41.84 Aligned_cols=126 Identities=16% Similarity=0.103 Sum_probs=73.8
Q ss_pred cccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccc---cchHHHhccccCcEEEeecCCCccee
Q 045653 126 NDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYL---FSASMIRSVEQLQHLDICLCKGLLGI 202 (272)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l---~~~~~~~~l~~L~~L~i~~c~~l~~~ 202 (272)
..+...|.|+.+.+..+.+..--...+-..+..+++|+.|++.+ +-++.- .-...+..+++|++|++++|. +..-
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dcl-l~~~ 256 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDCL-LENE 256 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeecccccc-cccc
Confidence 34566789999999888433210000111356789999999988 333322 112346678899999999994 3322
Q ss_pred eccCCccccCCccCCCccCeeecccccccccccCCC---ccccCCCcCEEeecCCCC
Q 045653 203 ISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGM---HTSEWPTLQSLEATGCDN 256 (272)
Q Consensus 203 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~---~~~~~~~L~~L~i~~c~~ 256 (272)
......... ....|+|+.|.+.++ .++.-.... ....-|.|++|++.+|.-
T Consensus 257 Ga~a~~~al--~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 257 GAIAFVDAL--KESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cHHHHHHHH--hccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 111111111 112599999999886 443322211 113478899999998853
No 70
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=81.95 E-value=0.11 Score=44.77 Aligned_cols=102 Identities=16% Similarity=0.150 Sum_probs=59.9
Q ss_pred cccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCcc---ccchHHHhccccCcEEEeecCCCcc
Q 045653 124 LFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKY---LFSASMIRSVEQLQHLDICLCKGLL 200 (272)
Q Consensus 124 ~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~---l~~~~~~~~l~~L~~L~i~~c~~l~ 200 (272)
+...+.++|+|+.|+|..+-++.--...+-..++.+++|+.|++.||.-=.. -+....-...|+|+.|.+.++. |+
T Consensus 205 l~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It 283 (382)
T KOG1909|consen 205 LAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-IT 283 (382)
T ss_pred HHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hH
Confidence 3456789999999999998222111111111244678999999999864221 0011223357999999999872 32
Q ss_pred eeeccCCccccCCccCCCccCeeeccccc
Q 045653 201 GIISEDTAIQVTPCFVFPRVSTLRLIDLP 229 (272)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 229 (272)
.-. +..-...+...|.|+.|+++++.
T Consensus 284 ~da---~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 284 RDA---ALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHH---HHHHHHHHhcchhhHHhcCCccc
Confidence 211 10000112225999999999874
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=78.66 E-value=1.4 Score=39.48 Aligned_cols=102 Identities=19% Similarity=0.215 Sum_probs=62.9
Q ss_pred CCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHH-HhccccCcEEEeecCCCcceeeccCCc
Q 045653 130 RLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASM-IRSVEQLQHLDICLCKGLLGIISEDTA 208 (272)
Q Consensus 130 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~-~~~l~~L~~L~i~~c~~l~~~~~~~~~ 208 (272)
.+..++.+.+..+.+..+.. .+..+.+|..|.+.+ +++..+ .. +..+++|+.|++++. .|+.+. +.
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~-----~l~~~~~l~~l~l~~-n~i~~i---~~~l~~~~~L~~L~ls~N-~I~~i~---~l 136 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILN-----HLSKLKSLEALDLYD-NKIEKI---ENLLSSLVNLQVLDLSFN-KITKLE---GL 136 (414)
T ss_pred HhHhHHhhccchhhhhhhhc-----ccccccceeeeeccc-cchhhc---ccchhhhhcchheecccc-cccccc---ch
Confidence 34566666666664443111 134688999999987 667766 34 678999999999984 455543 12
Q ss_pred cccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCC
Q 045653 209 IQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGC 254 (272)
Q Consensus 209 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c 254 (272)
..++.|+.|++.+. .++++... ..++.|+.+++.++
T Consensus 137 ------~~l~~L~~L~l~~N-~i~~~~~~---~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 137 ------STLTLLKELNLSGN-LISDISGL---ESLKSLKLLDLSYN 172 (414)
T ss_pred ------hhccchhhheeccC-cchhccCC---ccchhhhcccCCcc
Confidence 22356777777664 55544432 23566666666555
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=65.15 E-value=3.8 Score=20.58 Aligned_cols=15 Identities=27% Similarity=0.539 Sum_probs=9.4
Q ss_pred CCccEEEeccccceE
Q 045653 132 PKLEALELHEINVEK 146 (272)
Q Consensus 132 ~~L~~L~L~~~~l~~ 146 (272)
++|+.|++.+|+++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 466666666665555
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=65.15 E-value=3.8 Score=20.58 Aligned_cols=15 Identities=27% Similarity=0.539 Sum_probs=9.4
Q ss_pred CCccEEEeccccceE
Q 045653 132 PKLEALELHEINVEK 146 (272)
Q Consensus 132 ~~L~~L~L~~~~l~~ 146 (272)
++|+.|++.+|+++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 466666666665555
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=57.41 E-value=2.5 Score=31.89 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=32.6
Q ss_pred CCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653 131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC 196 (272)
Q Consensus 131 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 196 (272)
..+|+..+|+++.++.+... . ...++..+.+.+.+ +++.++ |.+ +..++.|+.|++...
T Consensus 52 ~~el~~i~ls~N~fk~fp~k-f---t~kf~t~t~lNl~~-neisdv-PeE-~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKK-F---TIKFPTATTLNLAN-NEISDV-PEE-LAAMPALRSLNLRFN 110 (177)
T ss_pred CceEEEEecccchhhhCCHH-H---hhccchhhhhhcch-hhhhhc-hHH-HhhhHHhhhcccccC
Confidence 34566666666655542211 1 11345566666665 556665 544 566677777766654
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=55.04 E-value=9.2 Score=18.70 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=7.2
Q ss_pred cccCeEEecCCC
Q 045653 66 AQISCLSLGNLP 77 (272)
Q Consensus 66 ~~L~~L~l~~c~ 77 (272)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 677788887764
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=43.76 E-value=21 Score=18.28 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=10.7
Q ss_pred CCccEEEeccccceE
Q 045653 132 PKLEALELHEINVEK 146 (272)
Q Consensus 132 ~~L~~L~L~~~~l~~ 146 (272)
.+|+.|++.+++++.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 567788887776655
Done!