Query 045653
Match_columns 272
No_of_seqs 115 out of 1191
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 06:44:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.7 5.2E-16 1.8E-20 133.2 18.3 213 8-267 79-300 (328)
2 4fcg_A Uncharacterized protein 99.6 8.5E-15 2.9E-19 125.6 13.5 209 8-253 102-310 (328)
3 1ozn_A Reticulon 4 receptor; N 99.6 1.1E-13 3.7E-18 116.1 16.5 213 3-256 25-237 (285)
4 2xwt_C Thyrotropin receptor; s 99.6 2.6E-13 9E-18 110.9 17.3 117 129-263 102-223 (239)
5 2id5_A Lingo-1, leucine rich r 99.5 7.7E-13 2.6E-17 118.8 20.9 192 4-235 26-217 (477)
6 3zyj_A Leucine-rich repeat-con 99.5 1.9E-12 6.4E-17 115.3 19.1 221 4-255 58-290 (440)
7 3zyi_A Leucine-rich repeat-con 99.5 2.2E-12 7.5E-17 115.2 19.0 221 4-255 69-301 (452)
8 3o6n_A APL1; leucine-rich repe 99.5 9.7E-13 3.3E-17 115.2 15.3 35 217-254 294-328 (390)
9 3zyj_A Leucine-rich repeat-con 99.5 1.9E-12 6.4E-17 115.3 17.3 182 8-230 86-291 (440)
10 2z62_A TOLL-like receptor 4, v 99.5 3.5E-12 1.2E-16 106.4 17.7 208 4-253 22-233 (276)
11 2xwt_C Thyrotropin receptor; s 99.5 2E-12 6.9E-17 105.6 15.7 205 8-257 29-239 (239)
12 3t6q_A CD180 antigen; protein- 99.4 2.6E-12 8.9E-17 118.7 17.5 224 9-260 277-515 (606)
13 3vq2_A TLR4, TOLL-like recepto 99.4 1.2E-12 4.1E-17 121.0 14.9 37 8-50 305-341 (606)
14 3zyi_A Leucine-rich repeat-con 99.4 3.9E-12 1.3E-16 113.6 17.6 182 8-230 97-302 (452)
15 2id5_A Lingo-1, leucine rich r 99.4 1.3E-11 4.3E-16 110.9 20.6 224 8-262 78-313 (477)
16 3oja_B Anopheles plasmodium-re 99.4 1.8E-12 6.1E-17 119.9 15.1 67 9-84 74-140 (597)
17 2o6q_A Variable lymphocyte rec 99.4 6.8E-12 2.3E-16 104.4 16.6 202 9-255 15-216 (270)
18 3rfs_A Internalin B, repeat mo 99.4 1.6E-12 5.5E-17 108.4 12.7 111 128-254 105-215 (272)
19 3vq2_A TLR4, TOLL-like recepto 99.4 1.9E-12 6.5E-17 119.6 14.4 218 8-256 326-557 (606)
20 1ozn_A Reticulon 4 receptor; N 99.4 9.3E-12 3.2E-16 104.3 16.1 203 13-262 14-218 (285)
21 2z80_A TOLL-like receptor 2, v 99.4 6E-12 2E-16 108.7 15.1 233 3-257 45-314 (353)
22 1ogq_A PGIP-2, polygalacturona 99.4 1.7E-12 5.9E-17 110.5 11.5 62 10-76 50-111 (313)
23 1xku_A Decorin; proteoglycan, 99.4 2.7E-11 9.1E-16 103.6 18.9 224 5-261 47-279 (330)
24 1p9a_G Platelet glycoprotein I 99.4 1.3E-11 4.4E-16 104.0 16.5 201 7-256 7-207 (290)
25 3o6n_A APL1; leucine-rich repe 99.4 9.9E-12 3.4E-16 108.8 16.3 72 181-264 243-314 (390)
26 2z80_A TOLL-like receptor 2, v 99.4 2.1E-12 7.1E-17 111.6 11.8 139 35-202 50-189 (353)
27 4fmz_A Internalin; leucine ric 99.4 7.1E-12 2.4E-16 107.8 15.0 214 7-262 107-328 (347)
28 2ast_B S-phase kinase-associat 99.4 6.5E-14 2.2E-18 120.1 1.7 39 158-197 220-258 (336)
29 3t6q_A CD180 antigen; protein- 99.4 1.6E-11 5.5E-16 113.4 17.9 227 8-263 299-541 (606)
30 3v47_A TOLL-like receptor 5B a 99.4 2.5E-11 8.5E-16 108.2 17.5 63 8-77 28-90 (455)
31 2z66_A Variable lymphocyte rec 99.4 6E-12 2.1E-16 106.5 12.7 225 3-255 21-259 (306)
32 3rgz_A Protein brassinosteroid 99.4 7.2E-12 2.4E-16 119.1 14.6 231 8-263 416-723 (768)
33 3o53_A Protein LRIM1, AGAP0063 99.4 5.6E-12 1.9E-16 107.4 12.2 215 8-256 32-249 (317)
34 2z66_A Variable lymphocyte rec 99.3 1.5E-11 5.2E-16 104.0 14.1 213 13-255 10-234 (306)
35 4fmz_A Internalin; leucine ric 99.3 2.6E-11 8.8E-16 104.3 15.7 210 8-255 64-298 (347)
36 1h6u_A Internalin H; cell adhe 99.3 1.1E-11 3.8E-16 105.2 12.9 190 8-255 39-228 (308)
37 2o6q_A Variable lymphocyte rec 99.3 4.4E-11 1.5E-15 99.5 16.3 186 4-229 31-216 (270)
38 3v47_A TOLL-like receptor 5B a 99.3 4E-11 1.4E-15 106.8 17.0 113 128-256 295-407 (455)
39 1ogq_A PGIP-2, polygalacturona 99.3 4.2E-12 1.4E-16 108.1 10.1 63 8-77 74-136 (313)
40 3oja_A Leucine-rich immune mol 99.3 1.4E-11 5E-16 111.1 14.1 216 8-257 32-250 (487)
41 3o53_A Protein LRIM1, AGAP0063 99.3 1.7E-11 5.9E-16 104.4 13.7 211 8-259 56-277 (317)
42 2ft3_A Biglycan; proteoglycan, 99.3 5.2E-11 1.8E-15 101.9 16.6 73 4-85 48-120 (332)
43 3rgz_A Protein brassinosteroid 99.3 1.7E-11 5.8E-16 116.5 14.6 156 9-196 393-548 (768)
44 4ay9_X Follicle-stimulating ho 99.3 7.8E-11 2.7E-15 101.7 17.5 220 3-253 23-255 (350)
45 3oja_B Anopheles plasmodium-re 99.3 4E-11 1.4E-15 110.8 16.1 69 8-85 49-117 (597)
46 2ast_B S-phase kinase-associat 99.3 1.9E-13 6.6E-18 117.1 0.4 190 7-254 90-282 (336)
47 4ay9_X Follicle-stimulating ho 99.3 9E-11 3.1E-15 101.3 16.2 211 13-262 12-241 (350)
48 1p9a_G Platelet glycoprotein I 99.3 9.1E-11 3.1E-15 98.7 15.3 185 35-265 8-192 (290)
49 1ziw_A TOLL-like receptor 3; i 99.3 1.6E-10 5.3E-15 108.2 18.4 121 126-262 474-601 (680)
50 4eco_A Uncharacterized protein 99.3 2E-11 7E-16 113.6 11.9 222 8-264 204-476 (636)
51 1ziw_A TOLL-like receptor 3; i 99.3 1.2E-10 4.2E-15 108.9 16.8 120 127-257 499-622 (680)
52 2ft3_A Biglycan; proteoglycan, 99.3 1.9E-10 6.5E-15 98.4 16.6 213 8-256 76-306 (332)
53 2z63_A TOLL-like receptor 4, v 99.3 5.3E-11 1.8E-15 108.9 13.7 115 127-256 416-530 (570)
54 4ezg_A Putative uncharacterize 99.3 5.6E-11 1.9E-15 94.2 12.0 109 128-255 84-192 (197)
55 4ecn_A Leucine-rich repeat pro 99.3 3.3E-10 1.1E-14 108.6 19.2 184 8-203 489-713 (876)
56 4eco_A Uncharacterized protein 99.3 5.3E-11 1.8E-15 110.8 13.3 120 130-263 455-584 (636)
57 2z62_A TOLL-like receptor 4, v 99.2 2.5E-10 8.4E-15 95.1 15.2 189 36-264 27-219 (276)
58 1wwl_A Monocyte differentiatio 99.2 1.1E-11 3.7E-16 105.4 6.9 120 126-261 167-290 (312)
59 1xku_A Decorin; proteoglycan, 99.2 8E-10 2.7E-14 94.4 18.6 214 8-256 74-305 (330)
60 3m19_A Variable lymphocyte rec 99.2 2.8E-10 9.6E-15 93.5 14.9 177 10-255 14-190 (251)
61 2z63_A TOLL-like receptor 4, v 99.2 1E-10 3.5E-15 107.0 12.7 119 128-264 392-513 (570)
62 2z81_A CD282 antigen, TOLL-lik 99.2 1.3E-10 4.3E-15 106.0 12.9 212 4-255 20-234 (549)
63 3rfs_A Internalin B, repeat mo 99.2 1.4E-10 4.7E-15 96.6 11.4 193 8-254 39-232 (272)
64 4ecn_A Leucine-rich repeat pro 99.2 2.6E-10 9E-15 109.2 14.5 121 130-264 695-825 (876)
65 4ezg_A Putative uncharacterize 99.2 1.1E-10 3.9E-15 92.4 9.8 87 125-228 105-191 (197)
66 1h6t_A Internalin B; cell adhe 99.2 1.6E-10 5.4E-15 97.3 11.1 102 129-254 109-210 (291)
67 3bz5_A Internalin-J, INLJ; leu 99.2 4.6E-10 1.6E-14 100.4 14.6 60 7-80 103-162 (457)
68 3bz5_A Internalin-J, INLJ; leu 99.2 6.8E-10 2.3E-14 99.3 15.7 156 6-196 81-243 (457)
69 1o6v_A Internalin A; bacterial 99.2 5.3E-10 1.8E-14 100.1 15.0 206 7-255 174-386 (466)
70 3j0a_A TOLL-like receptor 5; m 99.2 2.6E-09 8.8E-14 102.6 20.1 163 3-196 18-184 (844)
71 2z7x_B TOLL-like receptor 1, v 99.2 1.3E-10 4.5E-15 105.3 10.4 37 217-255 443-479 (520)
72 3g06_A SSPH2 (leucine-rich rep 99.1 9.2E-10 3.1E-14 101.9 16.0 76 160-256 221-296 (622)
73 2z81_A CD282 antigen, TOLL-lik 99.1 1.6E-10 5.5E-15 105.3 10.5 37 8-47 48-84 (549)
74 1o6v_A Internalin A; bacterial 99.1 1.4E-09 4.8E-14 97.4 16.4 205 7-255 153-364 (466)
75 3m19_A Variable lymphocyte rec 99.1 9.8E-10 3.3E-14 90.3 13.8 161 4-228 29-189 (251)
76 1wwl_A Monocyte differentiatio 99.1 1.5E-10 5.2E-15 98.3 8.8 210 8-255 93-307 (312)
77 2p1m_B Transport inhibitor res 99.1 4.6E-11 1.6E-15 109.9 5.5 167 8-196 64-245 (594)
78 3j0a_A TOLL-like receptor 5; m 99.1 4.5E-09 1.5E-13 100.9 19.4 63 8-77 46-108 (844)
79 1m9s_A Internalin B; cell inva 99.1 3.7E-10 1.3E-14 104.3 11.4 167 8-228 41-207 (605)
80 4glp_A Monocyte differentiatio 99.1 4.1E-11 1.4E-15 101.7 4.1 194 36-261 90-288 (310)
81 2p1m_B Transport inhibitor res 99.1 3.8E-12 1.3E-16 117.1 -2.6 44 217-261 371-419 (594)
82 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 2.1E-09 7.2E-14 98.5 15.0 125 129-263 350-491 (562)
83 1h6u_A Internalin H; cell adhe 99.1 1.7E-09 5.7E-14 91.7 12.9 175 33-261 37-211 (308)
84 4g8a_A TOLL-like receptor 4; l 99.1 2.4E-09 8.2E-14 98.8 14.5 114 126-255 463-578 (635)
85 3ogk_B Coronatine-insensitive 99.0 7.4E-12 2.5E-16 115.2 -2.9 43 217-260 377-422 (592)
86 4glp_A Monocyte differentiatio 99.0 7.9E-10 2.7E-14 93.7 9.5 108 129-254 194-304 (310)
87 2z7x_B TOLL-like receptor 1, v 99.0 2.1E-09 7.3E-14 97.3 12.5 84 129-229 396-479 (520)
88 3oja_A Leucine-rich immune mol 99.0 7.4E-09 2.5E-13 93.3 15.5 204 8-252 56-270 (487)
89 2ell_A Acidic leucine-rich nuc 99.0 2.4E-09 8E-14 82.4 10.4 120 128-264 45-166 (168)
90 3g06_A SSPH2 (leucine-rich rep 99.0 2.8E-08 9.5E-13 92.0 19.3 64 4-84 55-118 (622)
91 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 6.6E-09 2.3E-13 95.1 14.7 176 37-256 331-509 (562)
92 2o6s_A Variable lymphocyte rec 99.0 5.6E-09 1.9E-13 83.1 11.5 36 36-76 27-62 (208)
93 1xeu_A Internalin C; cellular 99.0 7.6E-10 2.6E-14 91.7 6.2 166 8-228 17-182 (263)
94 1h6t_A Internalin B; cell adhe 98.9 9.1E-10 3.1E-14 92.6 6.6 109 128-261 86-194 (291)
95 3ogk_B Coronatine-insensitive 98.9 1.5E-10 5.2E-15 106.4 1.5 222 8-252 71-326 (592)
96 2v9t_B SLIT homolog 2 protein 98.9 1.6E-08 5.6E-13 81.4 12.5 131 37-228 32-162 (220)
97 2v70_A SLIT-2, SLIT homolog 2 98.9 1.9E-08 6.5E-13 80.9 12.3 58 13-82 14-72 (220)
98 1m9s_A Internalin B; cell inva 98.9 2.3E-09 8E-14 99.0 7.1 171 32-255 38-208 (605)
99 2ell_A Acidic leucine-rich nuc 98.9 1.2E-08 4E-13 78.4 9.7 61 131-196 94-157 (168)
100 2je0_A Acidic leucine-rich nuc 98.9 7.1E-09 2.4E-13 78.0 8.3 111 127-253 37-149 (149)
101 2o6s_A Variable lymphocyte rec 98.9 1E-08 3.5E-13 81.6 9.5 111 128-254 48-158 (208)
102 1jl5_A Outer protein YOPM; leu 98.9 4.6E-08 1.6E-12 87.4 14.6 57 128-196 191-247 (454)
103 3e6j_A Variable lymphocyte rec 98.9 4.1E-08 1.4E-12 79.5 12.9 111 128-255 60-170 (229)
104 3e6j_A Variable lymphocyte rec 98.9 2.3E-08 7.9E-13 80.9 11.4 151 11-229 20-170 (229)
105 1jl5_A Outer protein YOPM; leu 98.9 1.5E-08 5.1E-13 90.5 11.2 58 127-196 148-205 (454)
106 4g8a_A TOLL-like receptor 4; l 98.8 1.1E-07 3.9E-12 87.6 16.2 120 127-262 440-559 (635)
107 2v70_A SLIT-2, SLIT homolog 2 98.8 1.2E-07 4.3E-12 76.1 14.0 112 128-255 53-164 (220)
108 2xot_A Amphoterin-induced prot 98.8 6.6E-08 2.3E-12 83.6 12.4 162 5-195 34-198 (361)
109 2v9t_B SLIT homolog 2 protein 98.8 1.4E-07 4.9E-12 75.8 13.3 113 127-255 51-163 (220)
110 2ca6_A RAN GTPase-activating p 98.8 4.4E-10 1.5E-14 98.1 -2.1 142 104-255 159-314 (386)
111 3cvr_A Invasion plasmid antige 98.7 1.2E-07 4E-12 87.0 13.5 189 11-262 60-248 (571)
112 1xeu_A Internalin C; cellular 98.7 7.5E-08 2.6E-12 79.6 11.1 145 8-197 39-183 (263)
113 3e4g_A ATP synthase subunit S, 98.7 5E-09 1.7E-13 80.9 3.3 92 132-235 61-156 (176)
114 2je0_A Acidic leucine-rich nuc 98.7 2.1E-08 7.3E-13 75.3 5.7 15 182-196 109-123 (149)
115 2xot_A Amphoterin-induced prot 98.7 2.6E-07 8.9E-12 79.9 13.2 19 65-84 38-56 (361)
116 2ca6_A RAN GTPase-activating p 98.7 2.8E-09 9.7E-14 93.0 0.3 222 9-259 31-288 (386)
117 1a9n_A U2A', U2A'; complex (nu 98.6 8.9E-08 3E-12 74.1 8.2 109 131-255 41-151 (176)
118 3sb4_A Hypothetical leucine ri 98.6 1.1E-06 3.6E-11 75.0 15.1 102 131-250 225-327 (329)
119 3goz_A Leucine-rich repeat-con 98.6 4.4E-09 1.5E-13 91.1 -0.3 116 133-255 168-295 (362)
120 3goz_A Leucine-rich repeat-con 98.6 4.4E-09 1.5E-13 91.0 -0.8 226 10-255 22-264 (362)
121 3e4g_A ATP synthase subunit S, 98.6 5.8E-08 2E-12 74.9 5.1 94 159-259 60-154 (176)
122 1z7x_W Ribonuclease inhibitor; 98.6 1.1E-09 3.6E-14 97.7 -5.7 41 217-259 226-270 (461)
123 1z7x_W Ribonuclease inhibitor; 98.5 3.3E-09 1.1E-13 94.5 -3.8 66 8-77 54-124 (461)
124 2o6r_A Variable lymphocyte rec 98.5 8.6E-07 2.9E-11 68.4 9.3 109 131-255 27-135 (177)
125 1a9n_A U2A', U2A'; complex (nu 98.4 8E-07 2.7E-11 68.6 8.2 62 129-196 61-123 (176)
126 3sb4_A Hypothetical leucine ri 98.4 2.4E-06 8.1E-11 72.8 11.5 90 159-263 225-315 (329)
127 2wfh_A SLIT homolog 2 protein 98.4 2.9E-06 9.9E-11 66.6 10.7 124 13-196 13-136 (193)
128 2wfh_A SLIT homolog 2 protein 98.4 1.4E-06 4.9E-11 68.4 8.5 106 132-254 31-136 (193)
129 1w8a_A SLIT protein; signaling 98.4 5E-06 1.7E-10 65.1 11.6 126 13-197 11-137 (192)
130 1w8a_A SLIT protein; signaling 98.4 2.1E-06 7.1E-11 67.3 9.3 106 133-254 30-136 (192)
131 3cvr_A Invasion plasmid antige 98.3 5.7E-06 1.9E-10 75.8 13.2 162 4-230 74-242 (571)
132 2o6r_A Variable lymphocyte rec 98.3 2.5E-06 8.5E-11 65.8 9.3 62 129-196 73-134 (177)
133 4b8c_D Glucose-repressible alc 98.2 2.3E-06 7.8E-11 80.8 6.6 110 126-255 218-327 (727)
134 1dce_A Protein (RAB geranylger 98.1 9.7E-06 3.3E-10 74.3 9.1 106 128-250 459-566 (567)
135 3g39_A Variable lymphocyte rec 98.0 1.5E-05 5.2E-10 61.1 8.1 84 131-228 29-112 (170)
136 2r9u_A Variable lymphocyte rec 98.0 2E-05 6.7E-10 60.8 8.3 83 132-228 33-115 (174)
137 4fdw_A Leucine rich hypothetic 98.0 0.00094 3.2E-08 58.4 19.2 86 155-254 266-355 (401)
138 3g39_A Variable lymphocyte rec 97.9 3.9E-05 1.3E-09 58.8 8.6 64 127-196 49-112 (170)
139 1dce_A Protein (RAB geranylger 97.9 2E-05 6.7E-10 72.2 8.0 110 132-264 441-552 (567)
140 2r9u_A Variable lymphocyte rec 97.9 5.1E-05 1.8E-09 58.4 8.7 65 127-197 52-116 (174)
141 1ds9_A Outer arm dynein; leuci 97.9 9.5E-07 3.2E-11 69.6 -1.8 107 128-250 66-180 (198)
142 4fdw_A Leucine rich hypothetic 97.9 0.00094 3.2E-08 58.4 17.1 109 126-253 265-379 (401)
143 2ra8_A Uncharacterized protein 97.8 1.4E-05 4.7E-10 69.1 5.1 43 34-76 136-182 (362)
144 4b8c_D Glucose-repressible alc 97.8 1.6E-05 5.5E-10 75.0 5.4 106 64-197 222-327 (727)
145 1ds9_A Outer arm dynein; leuci 97.8 7.8E-07 2.7E-11 70.1 -3.3 112 124-255 40-151 (198)
146 2ifg_A High affinity nerve gro 97.8 0.0001 3.5E-09 62.9 9.0 91 123-229 23-114 (347)
147 2ra8_A Uncharacterized protein 97.7 3.2E-05 1.1E-09 66.7 5.1 61 8-77 137-204 (362)
148 2ifg_A High affinity nerve gro 97.6 0.00016 5.5E-09 61.6 8.6 91 152-255 24-114 (347)
149 3un9_A NLR family member X1; l 97.6 8.6E-07 2.9E-11 77.0 -6.9 65 131-196 154-221 (372)
150 3un9_A NLR family member X1; l 97.3 4.6E-06 1.6E-10 72.4 -5.0 173 9-200 71-252 (372)
151 1io0_A Tropomodulin; LRR prote 96.3 0.00027 9.3E-09 54.8 -2.2 12 131-142 92-103 (185)
152 4fs7_A Uncharacterized protein 95.7 0.81 2.8E-05 39.3 17.2 33 217-252 342-374 (394)
153 1io0_A Tropomodulin; LRR prote 95.6 0.00085 2.9E-08 52.0 -2.1 124 126-255 30-162 (185)
154 3rw6_A Nuclear RNA export fact 95.3 0.015 5.2E-07 47.7 4.3 62 130-197 168-231 (267)
155 4gt6_A Cell surface protein; l 94.3 0.25 8.6E-06 42.5 9.6 106 128-253 261-366 (394)
156 3rw6_A Nuclear RNA export fact 94.2 0.022 7.7E-07 46.7 2.5 86 158-252 168-259 (267)
157 4fs7_A Uncharacterized protein 93.2 0.24 8.2E-06 42.6 7.6 99 130-249 295-393 (394)
158 4h09_A Hypothetical leucine ri 92.7 0.99 3.4E-05 38.3 10.7 37 156-194 282-318 (379)
159 4h09_A Hypothetical leucine ri 92.4 0.87 3E-05 38.7 9.9 83 156-252 259-341 (379)
160 4gt6_A Cell surface protein; l 87.6 2.8 9.7E-05 35.8 9.1 82 156-252 261-342 (394)
161 3rfe_A Platelet glycoprotein I 81.7 1.4 4.8E-05 31.5 3.7 34 132-169 31-64 (130)
162 1pgv_A TMD-1, tropomodulin TMD 76.7 0.46 1.6E-05 36.9 -0.2 16 130-145 68-83 (197)
163 3rfe_A Platelet glycoprotein I 70.8 2.4 8.2E-05 30.2 2.4 37 159-197 30-66 (130)
164 2lz0_A Uncharacterized protein 33.7 22 0.00076 23.8 2.1 14 181-194 38-51 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.71 E-value=5.2e-16 Score=133.25 Aligned_cols=213 Identities=20% Similarity=0.273 Sum_probs=155.6
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK 87 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 87 (272)
.++++++|++.++ +++.+ +...+.+++|++|+++++. +...+. ..+ .+++|+.|+++++ .++.+|....
T Consensus 79 ~~~~l~~L~L~~n-~l~~l---p~~l~~l~~L~~L~L~~n~-l~~lp~-~~~----~l~~L~~L~Ls~n-~l~~lp~~l~ 147 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQF---PDQAFRLSHLQHMTIDAAG-LMELPD-TMQ----QFAGLETLTLARN-PLRALPASIA 147 (328)
T ss_dssp TSTTCCEEEEESS-CCSSC---CSCGGGGTTCSEEEEESSC-CCCCCS-CGG----GGTTCSEEEEESC-CCCCCCGGGG
T ss_pred cccceeEEEccCC-Cchhc---ChhhhhCCCCCEEECCCCC-ccchhH-HHh----ccCCCCEEECCCC-ccccCcHHHh
Confidence 3578999999984 45555 4456668999999999884 333322 111 5899999999986 4555554321
Q ss_pred ccccccccccccccccceeecceeeeccCCCCcccccccc---------cCCCCCccEEEeccccceEeccCCCCCCCCC
Q 045653 88 RHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFND---------KVRLPKLEALELHEINVEKIWRSQVPAKFPR 158 (272)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~---------~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~ 158 (272)
.++.|+ .+++..|.... .++.. +..+++|+.|++.+|++..+ |..+..
T Consensus 148 --------------~l~~L~-~L~L~~n~~~~---~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-----p~~l~~ 204 (328)
T 4fcg_A 148 --------------SLNRLR-ELSIRACPELT---ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-----PASIAN 204 (328)
T ss_dssp --------------GCTTCC-EEEEEEETTCC---CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC-----CGGGGG
T ss_pred --------------cCcCCC-EEECCCCCCcc---ccChhHhhccchhhhccCCCCCEEECcCCCcCcc-----hHhhcC
Confidence 144555 77788776655 33333 33489999999999977752 234567
Q ss_pred CCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCC
Q 045653 159 FQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGM 238 (272)
Q Consensus 159 l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 238 (272)
+++|++|++.++. +..+ +. .+..+++|+.|++++|.....++ . ....+++|+.|++++|..+..++...
T Consensus 205 l~~L~~L~L~~N~-l~~l-~~-~l~~l~~L~~L~Ls~n~~~~~~p--~------~~~~l~~L~~L~L~~n~~~~~~p~~~ 273 (328)
T 4fcg_A 205 LQNLKSLKIRNSP-LSAL-GP-AIHHLPKLEELDLRGCTALRNYP--P------IFGGRAPLKRLILKDCSNLLTLPLDI 273 (328)
T ss_dssp CTTCCEEEEESSC-CCCC-CG-GGGGCTTCCEEECTTCTTCCBCC--C------CTTCCCCCCEEECTTCTTCCBCCTTG
T ss_pred CCCCCEEEccCCC-CCcC-ch-hhccCCCCCEEECcCCcchhhhH--H------HhcCCCCCCEEECCCCCchhhcchhh
Confidence 8999999999854 5555 43 47889999999999987665554 2 23346999999999998888888876
Q ss_pred ccccCCCcCEEeecCCCCCcccccccccc
Q 045653 239 HTSEWPTLQSLEATGCDNLKIFGSELSSF 267 (272)
Q Consensus 239 ~~~~~~~L~~L~i~~c~~l~~l~~~~~~~ 267 (272)
..+++|++|++++|+.+..+|..+...
T Consensus 274 --~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 274 --HRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp --GGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred --hcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 789999999999999999998876654
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.60 E-value=8.5e-15 Score=125.64 Aligned_cols=209 Identities=15% Similarity=0.214 Sum_probs=152.8
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK 87 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 87 (272)
.+++|++|+++++. ++.+ +...+.+++|++|+++++. +...+.. .+ .+++|+.|++++|..+..+|....
T Consensus 102 ~l~~L~~L~L~~n~-l~~l---p~~~~~l~~L~~L~Ls~n~-l~~lp~~-l~----~l~~L~~L~L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 102 RLSHLQHMTIDAAG-LMEL---PDTMQQFAGLETLTLARNP-LRALPAS-IA----SLNRLRELSIRACPELTELPEPLA 171 (328)
T ss_dssp GGTTCSEEEEESSC-CCCC---CSCGGGGTTCSEEEEESCC-CCCCCGG-GG----GCTTCCEEEEEEETTCCCCCSCSE
T ss_pred hCCCCCEEECCCCC-ccch---hHHHhccCCCCEEECCCCc-cccCcHH-Hh----cCcCCCEEECCCCCCccccChhHh
Confidence 36799999999853 4444 4556779999999999983 4433221 11 689999999999988887776432
Q ss_pred ccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEE
Q 045653 88 RHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVV 167 (272)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i 167 (272)
...+. .....++.|+ .+++..+.- . .++..+..+++|+.|++.+|++..+. ..+..+++|++|++
T Consensus 172 ~~~~~-----~~~~~l~~L~-~L~L~~n~l-~---~lp~~l~~l~~L~~L~L~~N~l~~l~-----~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 172 STDAS-----GEHQGLVNLQ-SLRLEWTGI-R---SLPASIANLQNLKSLKIRNSPLSALG-----PAIHHLPKLEELDL 236 (328)
T ss_dssp EEC-C-----CCEEESTTCC-EEEEEEECC-C---CCCGGGGGCTTCCEEEEESSCCCCCC-----GGGGGCTTCCEEEC
T ss_pred hccch-----hhhccCCCCC-EEECcCCCc-C---cchHhhcCCCCCCEEEccCCCCCcCc-----hhhccCCCCCEEEC
Confidence 21000 0011244555 777776632 2 45666788999999999999777532 23557899999999
Q ss_pred ecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcC
Q 045653 168 SNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQ 247 (272)
Q Consensus 168 ~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 247 (272)
.+|.....+ + ..+..+++|+.|++.+|.....++ .. +..+++|+.|++++|..++.+|... ..+++|+
T Consensus 237 s~n~~~~~~-p-~~~~~l~~L~~L~L~~n~~~~~~p--~~------~~~l~~L~~L~L~~n~~~~~iP~~l--~~L~~L~ 304 (328)
T 4fcg_A 237 RGCTALRNY-P-PIFGGRAPLKRLILKDCSNLLTLP--LD------IHRLTQLEKLDLRGCVNLSRLPSLI--AQLPANC 304 (328)
T ss_dssp TTCTTCCBC-C-CCTTCCCCCCEEECTTCTTCCBCC--TT------GGGCTTCCEEECTTCTTCCCCCGGG--GGSCTTC
T ss_pred cCCcchhhh-H-HHhcCCCCCCEEECCCCCchhhcc--hh------hhcCCCCCEEeCCCCCchhhccHHH--hhccCce
Confidence 998887765 4 357889999999999998766655 22 3345999999999999999999877 7899999
Q ss_pred EEeecC
Q 045653 248 SLEATG 253 (272)
Q Consensus 248 ~L~i~~ 253 (272)
.+.+..
T Consensus 305 ~l~l~~ 310 (328)
T 4fcg_A 305 IILVPP 310 (328)
T ss_dssp EEECCG
T ss_pred EEeCCH
Confidence 998763
No 3
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.56 E-value=1.1e-13 Score=116.14 Aligned_cols=213 Identities=15% Similarity=0.118 Sum_probs=144.4
Q ss_pred CCCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcccc
Q 045653 3 KVPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSF 82 (272)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 82 (272)
.+|....++|++|++++. +++.+. +.....+++|++|++.++ .+......... .+++|+.|+++++..+..+
T Consensus 25 ~ip~~~~~~l~~L~l~~n-~i~~~~--~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~----~l~~L~~L~l~~n~~l~~~ 96 (285)
T 1ozn_A 25 AVPVGIPAASQRIFLHGN-RISHVP--AASFRACRNLTILWLHSN-VLARIDAAAFT----GLALLEQLDLSDNAQLRSV 96 (285)
T ss_dssp SCCTTCCTTCSEEECTTS-CCCEEC--TTTTTTCTTCCEEECCSS-CCCEECTTTTT----TCTTCCEEECCSCTTCCCC
T ss_pred cCCcCCCCCceEEEeeCC-cCCccC--HHHcccCCCCCEEECCCC-ccceeCHhhcC----CccCCCEEeCCCCCCcccc
Confidence 345556678999999884 455551 133567899999999988 45554333322 5899999999988767766
Q ss_pred ccCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCc
Q 045653 83 CREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSL 162 (272)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L 162 (272)
++..... ++.|+ .+++..+.-.. ..+..+..+++|+.|++.++++..+.+. .+..+++|
T Consensus 97 ~~~~~~~-------------l~~L~-~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L 155 (285)
T 1ozn_A 97 DPATFHG-------------LGRLH-TLHLDRCGLQE---LGPGLFRGLAALQYLYLQDNALQALPDD----TFRDLGNL 155 (285)
T ss_dssp CTTTTTT-------------CTTCC-EEECTTSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTC
T ss_pred CHHHhcC-------------CcCCC-EEECCCCcCCE---ECHhHhhCCcCCCEEECCCCcccccCHh----HhccCCCc
Confidence 4432221 34455 66666554322 2234467789999999999977764332 35578999
Q ss_pred CEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCcccc
Q 045653 163 TRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSE 242 (272)
Q Consensus 163 ~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 242 (272)
++|++.++ .++.+ +...+..+++|+.|++.++. +..+.. . ....+++|+.|+++++ .++.++... ...
T Consensus 156 ~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~------~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~ 223 (285)
T 1ozn_A 156 THLFLHGN-RISSV-PERAFRGLHSLDRLLLHQNR-VAHVHP-H------AFRDLGRLMTLYLFAN-NLSALPTEA-LAP 223 (285)
T ss_dssp CEEECCSS-CCCEE-CTTTTTTCTTCCEEECCSSC-CCEECT-T------TTTTCTTCCEEECCSS-CCSCCCHHH-HTT
T ss_pred cEEECCCC-ccccc-CHHHhcCccccCEEECCCCc-ccccCH-h------HccCcccccEeeCCCC-cCCcCCHHH-ccc
Confidence 99999985 56666 55567789999999999874 555532 1 1233589999999886 666655431 157
Q ss_pred CCCcCEEeecCCCC
Q 045653 243 WPTLQSLEATGCDN 256 (272)
Q Consensus 243 ~~~L~~L~i~~c~~ 256 (272)
+++|++|++++++-
T Consensus 224 l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 224 LRALQYLRLNDNPW 237 (285)
T ss_dssp CTTCCEEECCSSCE
T ss_pred CcccCEEeccCCCc
Confidence 89999999988753
No 4
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=2.6e-13 Score=110.89 Aligned_cols=117 Identities=12% Similarity=0.152 Sum_probs=59.9
Q ss_pred CCCCCccEEEeccccceEeccCCCCCCCCCCCCcC---EEEEecCcCCccccchHHHhccccCc-EEEeecCCCcceeec
Q 045653 129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLT---RLVVSNCHKLKYLFSASMIRSVEQLQ-HLDICLCKGLLGIIS 204 (272)
Q Consensus 129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~---~L~i~~c~~l~~l~~~~~~~~l~~L~-~L~i~~c~~l~~~~~ 204 (272)
..+++|+.|++.+|++..+ |. +..+++|+ +|++.+++.+..+ +...+.++++|+ .|+++++ .++.++.
T Consensus 102 ~~l~~L~~L~l~~n~l~~l-----p~-~~~l~~L~~L~~L~l~~N~~l~~i-~~~~~~~l~~L~~~L~l~~n-~l~~i~~ 173 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMF-----PD-LTKVYSTDIFFILEITDNPYMTSI-PVNAFQGLCNETLTLKLYNN-GFTSVQG 173 (239)
T ss_dssp ECCTTCCEEEEEEECCCSC-----CC-CTTCCBCCSEEEEEEESCTTCCEE-CTTTTTTTBSSEEEEECCSC-CCCEECT
T ss_pred CCCCCCCEEeCCCCCCccc-----cc-cccccccccccEEECCCCcchhhc-CcccccchhcceeEEEcCCC-CCcccCH
Confidence 4456666666666654431 11 23444454 6666665455555 434455666666 6666654 3444431
Q ss_pred cCCccccCCccCCCccCeeecccccccccccCCCccccC-CCcCEEeecCCCCCcccccc
Q 045653 205 EDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEW-PTLQSLEATGCDNLKIFGSE 263 (272)
Q Consensus 205 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~i~~c~~l~~l~~~ 263 (272)
.... .++|+.|++++++.++.++.... ..+ ++|++|+++++ +++.+|..
T Consensus 174 --~~~~------~~~L~~L~L~~n~~l~~i~~~~~-~~l~~~L~~L~l~~N-~l~~l~~~ 223 (239)
T 2xwt_C 174 --YAFN------GTKLDAVYLNKNKYLTVIDKDAF-GGVYSGPSLLDVSQT-SVTALPSK 223 (239)
T ss_dssp --TTTT------TCEEEEEECTTCTTCCEECTTTT-TTCSBCCSEEECTTC-CCCCCCCT
T ss_pred --hhcC------CCCCCEEEcCCCCCcccCCHHHh-hccccCCcEEECCCC-ccccCChh
Confidence 1111 14566666666544555544321 344 56666666653 45555443
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.54 E-value=7.7e-13 Score=118.84 Aligned_cols=192 Identities=17% Similarity=0.168 Sum_probs=119.4
Q ss_pred CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653 4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC 83 (272)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 83 (272)
+|....+++++|++++. +++.+. +.....+++|++|++.++ .+......... .+++|+.|+++++ +++.++
T Consensus 26 ip~~~~~~l~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~ 96 (477)
T 2id5_A 26 VPEGIPTETRLLDLGKN-RIKTLN--QDEFASFPHLEELELNEN-IVSAVEPGAFN----NLFNLRTLGLRSN-RLKLIP 96 (477)
T ss_dssp CCSCCCTTCSEEECCSS-CCCEEC--TTTTTTCTTCCEEECTTS-CCCEECTTTTT----TCTTCCEEECCSS-CCCSCC
T ss_pred CCCCCCCCCcEEECCCC-ccceEC--HhHccCCCCCCEEECCCC-ccCEeChhhhh----CCccCCEEECCCC-cCCccC
Confidence 45555678999999984 455551 234567899999999998 55554433332 5899999999875 466665
Q ss_pred cCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcC
Q 045653 84 REVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLT 163 (272)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~ 163 (272)
...... ++.|+ .+++..+.-.. ..+..+..+++|+.|++.++++..+.+. .+..+++|+
T Consensus 97 ~~~~~~-------------l~~L~-~L~Ls~n~i~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~ 155 (477)
T 2id5_A 97 LGVFTG-------------LSNLT-KLDISENKIVI---LLDYMFQDLYNLKSLEVGDNDLVYISHR----AFSGLNSLE 155 (477)
T ss_dssp TTSSTT-------------CTTCC-EEECTTSCCCE---ECTTTTTTCTTCCEEEECCTTCCEECTT----SSTTCTTCC
T ss_pred cccccC-------------CCCCC-EEECCCCcccc---CChhHccccccCCEEECCCCccceeChh----hccCCCCCC
Confidence 432221 34444 55565543221 2234456788888888888877765443 355788888
Q ss_pred EEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccccccc
Q 045653 164 RLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFY 235 (272)
Q Consensus 164 ~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 235 (272)
+|++.++ .++.+ +...+..+++|+.|++.++ .+..+... ....+++|+.|+++++..+..++
T Consensus 156 ~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~i~~~~~~-------~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 156 QLTLEKC-NLTSI-PTEALSHLHGLIVLRLRHL-NINAIRDY-------SFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp EEEEESC-CCSSC-CHHHHTTCTTCCEEEEESC-CCCEECTT-------CSCSCTTCCEEEEECCTTCCEEC
T ss_pred EEECCCC-cCccc-ChhHhcccCCCcEEeCCCC-cCcEeChh-------hcccCcccceeeCCCCccccccC
Confidence 8888875 45565 5566778888888888876 34444321 11223555555555544444333
No 6
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.49 E-value=1.9e-12 Score=115.29 Aligned_cols=221 Identities=15% Similarity=0.127 Sum_probs=113.4
Q ss_pred CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653 4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC 83 (272)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 83 (272)
+|....++++.|+|++. +++.+. +.....+++|++|+++++. +......... .+++|+.|+++++ +++.++
T Consensus 58 iP~~~~~~l~~L~L~~n-~i~~~~--~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~----~l~~L~~L~L~~n-~l~~~~ 128 (440)
T 3zyj_A 58 VPDGISTNTRLLNLHEN-QIQIIK--VNSFKHLRHLEILQLSRNH-IRTIEIGAFN----GLANLNTLELFDN-RLTTIP 128 (440)
T ss_dssp CCSCCCTTCSEEECCSC-CCCEEC--TTTTSSCSSCCEEECCSSC-CCEECGGGGT----TCSSCCEEECCSS-CCSSCC
T ss_pred CCCCCCCCCcEEEccCC-cCCeeC--HHHhhCCCCCCEEECCCCc-CCccChhhcc----CCccCCEEECCCC-cCCeeC
Confidence 45555677888888874 344441 2344567888888888873 4443322222 4678888888774 555554
Q ss_pred cCcccc--ccc-cc-----cc---cccccccceeecceeeeccCCCCcccccc-cccCCCCCccEEEeccccceEeccCC
Q 045653 84 REVKRH--SIS-SN-----TK---DSQDQSMTAITCSYEVNLEDKLDTSTTLF-NDKVRLPKLEALELHEINVEKIWRSQ 151 (272)
Q Consensus 84 ~~~~~~--~~~-~~-----~~---~~~~~~~~~l~~~l~i~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~l~~i~~~~ 151 (272)
...... .+. +. +. ......++.|+ .+++..+..+. .++ ..+..+++|+.|++.+|++..+
T Consensus 129 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~-~L~l~~~~~l~---~i~~~~~~~l~~L~~L~L~~n~l~~~---- 200 (440)
T 3zyj_A 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR-RLDLGELKRLS---YISEGAFEGLSNLRYLNLAMCNLREI---- 200 (440)
T ss_dssp TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC-EEECCCCTTCC---EECTTTTTTCSSCCEEECTTSCCSSC----
T ss_pred HhHhhccccCceeeCCCCcccccCHHHhhhCcccC-EeCCCCCCCcc---eeCcchhhcccccCeecCCCCcCccc----
Confidence 422111 111 00 00 00011123333 44444433332 221 1244555666666666644432
Q ss_pred CCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccc
Q 045653 152 VPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKL 231 (272)
Q Consensus 152 ~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 231 (272)
| .+..+++|++|++.++ .+..+ ++..+.++++|+.|++.++ .++.+.. .....+++|+.|+++++ ++
T Consensus 201 -~-~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~-------~~~~~l~~L~~L~L~~N-~l 267 (440)
T 3zyj_A 201 -P-NLTPLIKLDELDLSGN-HLSAI-RPGSFQGLMHLQKLWMIQS-QIQVIER-------NAFDNLQSLVEINLAHN-NL 267 (440)
T ss_dssp -C-CCTTCSSCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECTTC-CCCEECT-------TSSTTCTTCCEEECTTS-CC
T ss_pred -c-ccCCCcccCEEECCCC-ccCcc-ChhhhccCccCCEEECCCC-ceeEECh-------hhhcCCCCCCEEECCCC-CC
Confidence 1 1335566666666653 44444 3344556666666666654 3444431 11223477777777765 56
Q ss_pred ccccCCCccccCCCcCEEeecCCC
Q 045653 232 RFFYPGMHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 232 ~~~~~~~~~~~~~~L~~L~i~~c~ 255 (272)
+.++.... ..+++|+.|++.+++
T Consensus 268 ~~~~~~~~-~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 268 TLLPHDLF-TPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCCTTTT-SSCTTCCEEECCSSC
T ss_pred CccChhHh-ccccCCCEEEcCCCC
Confidence 66555432 356777777776654
No 7
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.48 E-value=2.2e-12 Score=115.24 Aligned_cols=221 Identities=15% Similarity=0.091 Sum_probs=118.9
Q ss_pred CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653 4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC 83 (272)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 83 (272)
+|....+++++|+|++. +++.+. +.....+++|++|+++++ .+......... .+++|+.|+++++ +++.++
T Consensus 69 iP~~~~~~l~~L~L~~n-~i~~~~--~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~ 139 (452)
T 3zyi_A 69 VPQGIPSNTRYLNLMEN-NIQMIQ--ADTFRHLHHLEVLQLGRN-SIRQIEVGAFN----GLASLNTLELFDN-WLTVIP 139 (452)
T ss_dssp CCSCCCTTCSEEECCSS-CCCEEC--TTTTTTCTTCCEEECCSS-CCCEECTTTTT----TCTTCCEEECCSS-CCSBCC
T ss_pred cCCCCCCCccEEECcCC-cCceEC--HHHcCCCCCCCEEECCCC-ccCCcChhhcc----CcccCCEEECCCC-cCCccC
Confidence 34444567888888874 344441 234456788888888877 44444332222 4677777777764 355544
Q ss_pred cCcccc--ccc-ccc-----c---cccccccceeecceeeeccCCCCccccccc-ccCCCCCccEEEeccccceEeccCC
Q 045653 84 REVKRH--SIS-SNT-----K---DSQDQSMTAITCSYEVNLEDKLDTSTTLFN-DKVRLPKLEALELHEINVEKIWRSQ 151 (272)
Q Consensus 84 ~~~~~~--~~~-~~~-----~---~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~l~~i~~~~ 151 (272)
...... .+. +.+ . ......++.|+ .+++..+..+. .++. .+..+++|+.|++++|++..+
T Consensus 140 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~l~~~~~l~---~i~~~~~~~l~~L~~L~L~~n~l~~~---- 211 (452)
T 3zyi_A 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM-RLDLGELKKLE---YISEGAFEGLFNLKYLNLGMCNIKDM---- 211 (452)
T ss_dssp TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCC-EEECCCCTTCC---EECTTTTTTCTTCCEEECTTSCCSSC----
T ss_pred hhhhcccCCCCEEECCCCCcceeCHhHHhcCCccc-EEeCCCCCCcc---ccChhhccCCCCCCEEECCCCccccc----
Confidence 332111 111 000 0 00011233444 44555444433 2221 245566677777766655542
Q ss_pred CCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccc
Q 045653 152 VPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKL 231 (272)
Q Consensus 152 ~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 231 (272)
| .+..+++|++|++.++ .+..+ ++..+.++++|+.|++.++ .+..+... ....+++|+.|+++++ ++
T Consensus 212 -~-~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~-------~~~~l~~L~~L~L~~N-~l 278 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGN-HFPEI-RPGSFHGLSSLKKLWVMNS-QVSLIERN-------AFDGLASLVELNLAHN-NL 278 (452)
T ss_dssp -C-CCTTCTTCCEEECTTS-CCSEE-CGGGGTTCTTCCEEECTTS-CCCEECTT-------TTTTCTTCCEEECCSS-CC
T ss_pred -c-cccccccccEEECcCC-cCccc-CcccccCccCCCEEEeCCC-cCceECHH-------HhcCCCCCCEEECCCC-cC
Confidence 1 2345677777777763 34444 3445667777777777765 34444311 1233477888888775 66
Q ss_pred ccccCCCccccCCCcCEEeecCCC
Q 045653 232 RFFYPGMHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 232 ~~~~~~~~~~~~~~L~~L~i~~c~ 255 (272)
+.++.... ..+++|+.|++.+++
T Consensus 279 ~~~~~~~~-~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 279 SSLPHDLF-TPLRYLVELHLHHNP 301 (452)
T ss_dssp SCCCTTSS-TTCTTCCEEECCSSC
T ss_pred CccChHHh-ccccCCCEEEccCCC
Confidence 66655432 467778888877765
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.47 E-value=9.7e-13 Score=115.21 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=15.8
Q ss_pred CCccCeeecccccccccccCCCccccCCCcCEEeecCC
Q 045653 217 FPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGC 254 (272)
Q Consensus 217 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c 254 (272)
+++|+.|+++++ .++.++... ..+++|++|+++++
T Consensus 294 l~~L~~L~L~~n-~l~~~~~~~--~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 294 IPTLKVLDLSHN-HLLHVERNQ--PQFDRLENLYLDHN 328 (390)
T ss_dssp CTTCCEEECCSS-CCCCCGGGH--HHHTTCSEEECCSS
T ss_pred CCCCCEEECCCC-cceecCccc--cccCcCCEEECCCC
Confidence 355555555554 344443332 33444555544444
No 9
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.47 E-value=1.9e-12 Score=115.31 Aligned_cols=182 Identities=15% Similarity=0.202 Sum_probs=114.5
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecC------------
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGN------------ 75 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~------------ 75 (272)
.+++|++|+|+++ .++.+. +.....+++|++|+++++ ++...+..... .+++|+.|++++
T Consensus 86 ~l~~L~~L~Ls~n-~i~~i~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~----~l~~L~~L~L~~N~i~~~~~~~~~ 157 (440)
T 3zyj_A 86 HLRHLEILQLSRN-HIRTIE--IGAFNGLANLNTLELFDN-RLTTIPNGAFV----YLSKLKELWLRNNPIESIPSYAFN 157 (440)
T ss_dssp SCSSCCEEECCSS-CCCEEC--GGGGTTCSSCCEEECCSS-CCSSCCTTTSC----SCSSCCEEECCSCCCCEECTTTTT
T ss_pred CCCCCCEEECCCC-cCCccC--hhhccCCccCCEEECCCC-cCCeeCHhHhh----ccccCceeeCCCCcccccCHHHhh
Confidence 4577888888774 344441 123445677777777776 33333222111 345555555554
Q ss_pred ------------CCCccccccCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEecccc
Q 045653 76 ------------LPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEIN 143 (272)
Q Consensus 76 ------------c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 143 (272)
+..+..++... ...++.|+ .+++..+.-. .++ .+..+++|+.|++++|+
T Consensus 158 ~l~~L~~L~l~~~~~l~~i~~~~-------------~~~l~~L~-~L~L~~n~l~----~~~-~~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 158 RIPSLRRLDLGELKRLSYISEGA-------------FEGLSNLR-YLNLAMCNLR----EIP-NLTPLIKLDELDLSGNH 218 (440)
T ss_dssp TCTTCCEEECCCCTTCCEECTTT-------------TTTCSSCC-EEECTTSCCS----SCC-CCTTCSSCCEEECTTSC
T ss_pred hCcccCEeCCCCCCCcceeCcch-------------hhcccccC-eecCCCCcCc----ccc-ccCCCcccCEEECCCCc
Confidence 43333333221 12244555 6666655322 233 35788999999999998
Q ss_pred ceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCee
Q 045653 144 VEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTL 223 (272)
Q Consensus 144 l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L 223 (272)
+..+.+. .+..+++|++|++.++ .+..+ +...+.++++|+.|+++++ +++.++.. ....+++|+.|
T Consensus 219 l~~~~~~----~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~-------~~~~l~~L~~L 284 (440)
T 3zyj_A 219 LSAIRPG----SFQGLMHLQKLWMIQS-QIQVI-ERNAFDNLQSLVEINLAHN-NLTLLPHD-------LFTPLHHLERI 284 (440)
T ss_dssp CCEECTT----TTTTCTTCCEEECTTC-CCCEE-CTTSSTTCTTCCEEECTTS-CCCCCCTT-------TTSSCTTCCEE
T ss_pred cCccChh----hhccCccCCEEECCCC-ceeEE-ChhhhcCCCCCCEEECCCC-CCCccChh-------HhccccCCCEE
Confidence 8876554 4668999999999984 56666 5567788999999999997 56655521 12335899999
Q ss_pred ecccccc
Q 045653 224 RLIDLPK 230 (272)
Q Consensus 224 ~l~~c~~ 230 (272)
++++.+-
T Consensus 285 ~L~~Np~ 291 (440)
T 3zyj_A 285 HLHHNPW 291 (440)
T ss_dssp ECCSSCE
T ss_pred EcCCCCc
Confidence 9988653
No 10
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.46 E-value=3.5e-12 Score=106.40 Aligned_cols=208 Identities=19% Similarity=0.206 Sum_probs=133.3
Q ss_pred CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653 4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC 83 (272)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 83 (272)
+|....++|++|+++++ +++.+. +.....+++|++|+++++ .+......... .+++|+.|+++++ .++.++
T Consensus 22 ip~~l~~~l~~L~ls~n-~l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~ 92 (276)
T 2z62_A 22 IPDNLPFSTKNLDLSFN-PLRHLG--SYSFFSFPELQVLDLSRC-EIQTIEDGAYQ----SLSHLSTLILTGN-PIQSLA 92 (276)
T ss_dssp CCSSSCTTCCEEECTTC-CCCEEC--TTTTTTCTTCSEEECTTC-CCCEECTTTTT----TCTTCCEEECTTC-CCCEEC
T ss_pred cCCCCCCCccEEECCCC-cccccC--HhHhccccCCcEEECCCC-cCCccCHHHcc----CCcCCCEEECCCC-ccCccC
Confidence 34444467999999885 455551 124556899999999998 55554433222 5799999999875 444444
Q ss_pred cCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcC
Q 045653 84 REVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLT 163 (272)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~ 163 (272)
...... ++.|+ .+.+..+.-.. .....+..+++|+.|++.++++..+ .+|..+..+++|+
T Consensus 93 ~~~~~~-------------l~~L~-~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~---~l~~~~~~l~~L~ 152 (276)
T 2z62_A 93 LGAFSG-------------LSSLQ-KLVAVETNLAS---LENFPIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLE 152 (276)
T ss_dssp TTTTTT-------------CTTCC-EEECTTSCCCC---STTCCCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCC
T ss_pred hhhhcC-------------Ccccc-EEECCCCCccc---cCchhcccCCCCCEEECcCCcccee---cCchhhccCCCCC
Confidence 322111 33444 55555443221 1122357789999999999866652 1233456789999
Q ss_pred EEEEecCcCCccccchHHHhccccCc----EEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCc
Q 045653 164 RLVVSNCHKLKYLFSASMIRSVEQLQ----HLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMH 239 (272)
Q Consensus 164 ~L~i~~c~~l~~l~~~~~~~~l~~L~----~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 239 (272)
+|++.++ .++.+ +...+..+++|+ +|+++++ .+..++. .... ..+|+.|+++++ .++.++....
T Consensus 153 ~L~Ls~N-~l~~~-~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~--~~~~------~~~L~~L~L~~n-~l~~~~~~~~ 220 (276)
T 2z62_A 153 HLDLSSN-KIQSI-YCTDLRVLHQMPLLNLSLDLSLN-PMNFIQP--GAFK------EIRLKELALDTN-QLKSVPDGIF 220 (276)
T ss_dssp EEECCSS-CCCEE-CGGGGHHHHTCTTCCEEEECCSS-CCCEECT--TSSC------SCCEEEEECCSS-CCSCCCTTTT
T ss_pred EEECCCC-CCCcC-CHHHhhhhhhccccceeeecCCC-cccccCc--cccC------CCcccEEECCCC-ceeecCHhHh
Confidence 9999885 45555 444556666666 7888875 4665542 2212 258999999987 5887776432
Q ss_pred cccCCCcCEEeecC
Q 045653 240 TSEWPTLQSLEATG 253 (272)
Q Consensus 240 ~~~~~~L~~L~i~~ 253 (272)
..+++|++|++++
T Consensus 221 -~~l~~L~~L~l~~ 233 (276)
T 2z62_A 221 -DRLTSLQKIWLHT 233 (276)
T ss_dssp -TTCCSCCEEECCS
T ss_pred -cccccccEEEccC
Confidence 5789999999984
No 11
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.46 E-value=2e-12 Score=105.60 Aligned_cols=205 Identities=13% Similarity=0.069 Sum_probs=145.3
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK 87 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 87 (272)
..++|++|++++. +++.+.. .....+++|++|++.++..+...+..... .+++|+.|++++|.+++.++....
T Consensus 29 ~~~~l~~L~l~~n-~l~~i~~--~~~~~l~~L~~L~l~~n~~l~~i~~~~f~----~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 29 LPPSTQTLKLIET-HLRTIPS--HAFSNLPNISRIYVSIDVTLQQLESHSFY----NLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CCTTCCEEEEESC-CCSEECT--TTTTTCTTCCEEEEECCSSCCEECTTTEE----SCTTCCEEEEEEETTCCEECTTSE
T ss_pred CCCcccEEEEeCC-cceEECH--HHccCCCCCcEEeCCCCCCcceeCHhHcC----CCcCCcEEECCCCCCeeEcCHHHh
Confidence 3357999999984 4555521 24556899999999999767666543333 589999999998888888775432
Q ss_pred ccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCcc---EEEeccc-cceEeccCCCCCCCCCCCCcC
Q 045653 88 RHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLE---ALELHEI-NVEKIWRSQVPAKFPRFQSLT 163 (272)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~---~L~L~~~-~l~~i~~~~~~~~~~~l~~L~ 163 (272)
.. .+.|+ .+++..+.-. .++. +..+++|+ .|++.++ ++..+.+. .+..+++|+
T Consensus 102 ~~-------------l~~L~-~L~l~~n~l~----~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~----~~~~l~~L~ 158 (239)
T 2xwt_C 102 KE-------------LPLLK-FLGIFNTGLK----MFPD-LTKVYSTDIFFILEITDNPYMTSIPVN----AFQGLCNET 158 (239)
T ss_dssp EC-------------CTTCC-EEEEEEECCC----SCCC-CTTCCBCCSEEEEEEESCTTCCEECTT----TTTTTBSSE
T ss_pred CC-------------CCCCC-EEeCCCCCCc----cccc-cccccccccccEEECCCCcchhhcCcc----cccchhcce
Confidence 22 34555 7777765432 2333 56677777 9999999 88886544 356799999
Q ss_pred -EEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCC-CccCeeecccccccccccCCCccc
Q 045653 164 -RLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVF-PRVSTLRLIDLPKLRFFYPGMHTS 241 (272)
Q Consensus 164 -~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~ 241 (272)
+|++.++ .++.+ +...+.. ++|++|++.++..++.++... ...+ ++|+.|++++. .++.++..
T Consensus 159 ~~L~l~~n-~l~~i-~~~~~~~-~~L~~L~L~~n~~l~~i~~~~-------~~~l~~~L~~L~l~~N-~l~~l~~~---- 223 (239)
T 2xwt_C 159 LTLKLYNN-GFTSV-QGYAFNG-TKLDAVYLNKNKYLTVIDKDA-------FGGVYSGPSLLDVSQT-SVTALPSK---- 223 (239)
T ss_dssp EEEECCSC-CCCEE-CTTTTTT-CEEEEEECTTCTTCCEECTTT-------TTTCSBCCSEEECTTC-CCCCCCCT----
T ss_pred eEEEcCCC-CCccc-CHhhcCC-CCCCEEEcCCCCCcccCCHHH-------hhccccCCcEEECCCC-ccccCChh----
Confidence 9999884 56666 5544455 899999999986687775221 2335 89999999984 77777653
Q ss_pred cCCCcCEEeecCCCCC
Q 045653 242 EWPTLQSLEATGCDNL 257 (272)
Q Consensus 242 ~~~~L~~L~i~~c~~l 257 (272)
.+++|+.|.+.++.++
T Consensus 224 ~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 224 GLEHLKELIARNTWTL 239 (239)
T ss_dssp TCTTCSEEECTTC---
T ss_pred HhccCceeeccCccCC
Confidence 5889999999988754
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.45 E-value=2.6e-12 Score=118.68 Aligned_cols=224 Identities=15% Similarity=0.163 Sum_probs=110.1
Q ss_pred CCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccc
Q 045653 9 FPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKR 88 (272)
Q Consensus 9 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 88 (272)
+++|++|+++++ .++.+ +.....+++|++|++.++. +......... .+++|+.|+++++.....++.+...
T Consensus 277 l~~L~~L~l~~n-~l~~l---p~~l~~l~~L~~L~l~~n~-l~~~~~~~~~----~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 277 FSGLQELDLTAT-HLSEL---PSGLVGLSTLKKLVLSANK-FENLCQISAS----NFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp CTTCSEEECTTS-CCSCC---CSSCCSCTTCCEEECTTCC-CSBGGGGCGG----GCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred ccCCCEEeccCC-ccCCC---ChhhcccccCCEEECccCC-cCcCchhhhh----ccCcCCEEECCCCCcccccchhhhh
Confidence 456677777664 34433 3334456677777777663 2222111111 4667777777665433233322111
Q ss_pred c--ccc-c-----cccc-----ccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCC
Q 045653 89 H--SIS-S-----NTKD-----SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAK 155 (272)
Q Consensus 89 ~--~~~-~-----~~~~-----~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~ 155 (272)
. .+. + .+.. .....++.|+ .+++..+.-.. ..+..+..+++|+.|++.+|++....+. ..
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~-~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~ 420 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQ-SLNLSYNEPLS---LKTEAFKECPQLELLDLAFTRLKVKDAQ---SP 420 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCC-EEECCSCSCEE---ECTTTTTTCTTCSEEECTTCCEECCTTC---CT
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCC-EEECCCCcCCc---CCHHHhcCCccCCeEECCCCcCCCcccc---hh
Confidence 0 000 0 0000 0011122333 33333332111 1223344556666666666644432111 12
Q ss_pred CCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcce-eeccCCccccCCccCCCccCeeecccccccccc
Q 045653 156 FPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLG-IISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFF 234 (272)
Q Consensus 156 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 234 (272)
+..+++|++|++.++. +... ++..+..+++|++|+++++. +.. .... ......+++|+.|+++++ +++.+
T Consensus 421 ~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-----~~~~~~l~~L~~L~Ls~n-~l~~~ 491 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSL-LDIS-SEQLFDGLPALQHLNLQGNH-FPKGNIQK-----TNSLQTLGRLEILVLSFC-DLSSI 491 (606)
T ss_dssp TTTCTTCCEEECTTCC-CBTT-CTTTTTTCTTCCEEECTTCB-CGGGEECS-----SCGGGGCTTCCEEECTTS-CCCEE
T ss_pred hhCcccCCEEECCCCc-cCCc-CHHHHhCCCCCCEEECCCCC-CCcccccc-----chhhccCCCccEEECCCC-ccCcc
Confidence 4456777777776643 3333 23445667777777777763 322 1110 012344688999999887 55555
Q ss_pred c-CCCccccCCCcCEEeecCCCCCccc
Q 045653 235 Y-PGMHTSEWPTLQSLEATGCDNLKIF 260 (272)
Q Consensus 235 ~-~~~~~~~~~~L~~L~i~~c~~l~~l 260 (272)
+ ..+ ..+++|++|+++++. ++.+
T Consensus 492 ~~~~~--~~l~~L~~L~Ls~N~-l~~~ 515 (606)
T 3t6q_A 492 DQHAF--TSLKMMNHVDLSHNR-LTSS 515 (606)
T ss_dssp CTTTT--TTCTTCCEEECCSSC-CCGG
T ss_pred Chhhh--ccccCCCEEECCCCc-cCcC
Confidence 4 334 578899999999884 5443
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.45 E-value=1.2e-12 Score=120.96 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=22.2
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEI 50 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l 50 (272)
.+++|++|.+.++.- +.+ + .. .+++|++|++.++..+
T Consensus 305 ~~~~L~~L~l~~n~l-~~l---p-~~-~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 305 KHFKWQSLSIIRCQL-KQF---P-TL-DLPFLKSLTLTMNKGS 341 (606)
T ss_dssp TTCCCSEEEEESCCC-SSC---C-CC-CCSSCCEEEEESCSSC
T ss_pred ccccCCEEEcccccC-ccc---c-cC-CCCccceeeccCCcCc
Confidence 345777777777654 444 1 22 5677777777766443
No 14
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.44 E-value=3.9e-12 Score=113.61 Aligned_cols=182 Identities=17% Similarity=0.185 Sum_probs=112.5
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEec-------------
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLG------------- 74 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~------------- 74 (272)
.+++|++|+|+++ +++.+. +.....+++|++|+++++. +...+..... .+++|+.|+++
T Consensus 97 ~l~~L~~L~Ls~n-~i~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~ 168 (452)
T 3zyi_A 97 HLHHLEVLQLGRN-SIRQIE--VGAFNGLASLNTLELFDNW-LTVIPSGAFE----YLSKLRELWLRNNPIESIPSYAFN 168 (452)
T ss_dssp TCTTCCEEECCSS-CCCEEC--TTTTTTCTTCCEEECCSSC-CSBCCTTTSS----SCTTCCEEECCSCCCCEECTTTTT
T ss_pred CCCCCCEEECCCC-ccCCcC--hhhccCcccCCEEECCCCc-CCccChhhhc----ccCCCCEEECCCCCcceeCHhHHh
Confidence 4567777777764 344441 1233456777777777662 3332222111 24455555554
Q ss_pred -----------CCCCccccccCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEecccc
Q 045653 75 -----------NLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEIN 143 (272)
Q Consensus 75 -----------~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 143 (272)
+|..+..++.... ...+.|+ .+++..+.-. .+ ..+..+++|+.|++++|+
T Consensus 169 ~l~~L~~L~l~~~~~l~~i~~~~~-------------~~l~~L~-~L~L~~n~l~----~~-~~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 169 RVPSLMRLDLGELKKLEYISEGAF-------------EGLFNLK-YLNLGMCNIK----DM-PNLTPLVGLEELEMSGNH 229 (452)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTT-------------TTCTTCC-EEECTTSCCS----SC-CCCTTCTTCCEEECTTSC
T ss_pred cCCcccEEeCCCCCCccccChhhc-------------cCCCCCC-EEECCCCccc----cc-ccccccccccEEECcCCc
Confidence 4444444332211 1244555 6666655322 22 235788999999999998
Q ss_pred ceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCee
Q 045653 144 VEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTL 223 (272)
Q Consensus 144 l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L 223 (272)
+..+.+. .+..+++|++|++.++ .+..+ +...+.++++|+.|+++++ +++.++.. . ...+++|+.|
T Consensus 230 l~~~~~~----~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~--~-----~~~l~~L~~L 295 (452)
T 3zyi_A 230 FPEIRPG----SFHGLSSLKKLWVMNS-QVSLI-ERNAFDGLASLVELNLAHN-NLSSLPHD--L-----FTPLRYLVEL 295 (452)
T ss_dssp CSEECGG----GGTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSS-CCSCCCTT--S-----STTCTTCCEE
T ss_pred CcccCcc----cccCccCCCEEEeCCC-cCceE-CHHHhcCCCCCCEEECCCC-cCCccChH--H-----hccccCCCEE
Confidence 8876554 4668999999999984 55666 4466788999999999997 56655521 1 2335899999
Q ss_pred ecccccc
Q 045653 224 RLIDLPK 230 (272)
Q Consensus 224 ~l~~c~~ 230 (272)
++.+.+-
T Consensus 296 ~L~~Np~ 302 (452)
T 3zyi_A 296 HLHHNPW 302 (452)
T ss_dssp ECCSSCE
T ss_pred EccCCCc
Confidence 9988753
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.44 E-value=1.3e-11 Score=110.93 Aligned_cols=224 Identities=15% Similarity=0.142 Sum_probs=105.8
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK 87 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 87 (272)
.+++|++|+|+++ .++.+. ......+++|++|+++++. +......... .+++|+.|+++++ .+..+.....
T Consensus 78 ~l~~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~----~l~~L~~L~l~~n-~l~~~~~~~~ 148 (477)
T 2id5_A 78 NLFNLRTLGLRSN-RLKLIP--LGVFTGLSNLTKLDISENK-IVILLDYMFQ----DLYNLKSLEVGDN-DLVYISHRAF 148 (477)
T ss_dssp TCTTCCEEECCSS-CCCSCC--TTSSTTCTTCCEEECTTSC-CCEECTTTTT----TCTTCCEEEECCT-TCCEECTTSS
T ss_pred CCccCCEEECCCC-cCCccC--cccccCCCCCCEEECCCCc-cccCChhHcc----ccccCCEEECCCC-ccceeChhhc
Confidence 4578999999874 355441 1223567889999998874 3333222222 4677777777764 3333322111
Q ss_pred cc--ccc-ccc-----cc---ccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccc-cceEeccCCCCCC
Q 045653 88 RH--SIS-SNT-----KD---SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEI-NVEKIWRSQVPAK 155 (272)
Q Consensus 88 ~~--~~~-~~~-----~~---~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~i~~~~~~~~ 155 (272)
.. .+. +.+ .. ......+.|+ .+++..+.-.. .....+..+++|+.|++.+| .+..+...
T Consensus 149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~l~~n~i~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----- 219 (477)
T 2id5_A 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLI-VLRLRHLNINA---IRDYSFKRLYRLKVLEISHWPYLDTMTPN----- 219 (477)
T ss_dssp TTCTTCCEEEEESCCCSSCCHHHHTTCTTCC-EEEEESCCCCE---ECTTCSCSCTTCCEEEEECCTTCCEECTT-----
T ss_pred cCCCCCCEEECCCCcCcccChhHhcccCCCc-EEeCCCCcCcE---eChhhcccCcccceeeCCCCccccccCcc-----
Confidence 11 000 000 00 0001122222 33333322111 11122344555555555555 22222111
Q ss_pred CCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccccccc
Q 045653 156 FPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFY 235 (272)
Q Consensus 156 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 235 (272)
.....+|++|++.++ .++.+ +...+..+++|+.|+++++. +..+... ....+++|+.|+++++ +++.+.
T Consensus 220 ~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-------~~~~l~~L~~L~L~~n-~l~~~~ 288 (477)
T 2id5_A 220 CLYGLNLTSLSITHC-NLTAV-PYLAVRHLVYLRFLNLSYNP-ISTIEGS-------MLHELLRLQEIQLVGG-QLAVVE 288 (477)
T ss_dssp TTTTCCCSEEEEESS-CCCSC-CHHHHTTCTTCCEEECCSSC-CCEECTT-------SCTTCTTCCEEECCSS-CCSEEC
T ss_pred cccCccccEEECcCC-ccccc-CHHHhcCccccCeeECCCCc-CCccChh-------hccccccCCEEECCCC-ccceEC
Confidence 112346666666664 34454 54556777777777777753 5444321 1222466666666654 444443
Q ss_pred CCCccccCCCcCEEeecCCCCCccccc
Q 045653 236 PGMHTSEWPTLQSLEATGCDNLKIFGS 262 (272)
Q Consensus 236 ~~~~~~~~~~L~~L~i~~c~~l~~l~~ 262 (272)
.... ..+++|++|+++++ +++.++.
T Consensus 289 ~~~~-~~l~~L~~L~L~~N-~l~~~~~ 313 (477)
T 2id5_A 289 PYAF-RGLNYLRVLNVSGN-QLTTLEE 313 (477)
T ss_dssp TTTB-TTCTTCCEEECCSS-CCSCCCG
T ss_pred HHHh-cCcccCCEEECCCC-cCceeCH
Confidence 2211 35566666666655 3444443
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.43 E-value=1.8e-12 Score=119.89 Aligned_cols=67 Identities=19% Similarity=0.174 Sum_probs=33.4
Q ss_pred CCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcccccc
Q 045653 9 FPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCR 84 (272)
Q Consensus 9 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 84 (272)
+++|++|++.++. ++.+ . +...+.+++|+.|+++++. +...+....+ .+++|+.|+++++ .+..++.
T Consensus 74 l~~L~~L~L~~n~-l~~~-~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~----~l~~L~~L~L~~n-~l~~l~~ 140 (597)
T 3oja_B 74 FRQVELLNLNDLQ-IEEI-D-TYAFAYAHTIQKLYMGFNA-IRYLPPHVFQ----NVPLLTVLVLERN-DLSSLPR 140 (597)
T ss_dssp CCCCSEEECTTSC-CCEE-C-TTTTTTCTTCCEEECCSSC-CCCCCTTTTT----TCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCcEEECCCCC-CCCC-C-hHHhcCCCCCCEEECCCCc-CCCCCHHHHc----CCCCCCEEEeeCC-CCCCCCH
Confidence 4566666666532 3333 1 1233456666666666663 3333322212 3666777776664 4444443
No 17
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.42 E-value=6.8e-12 Score=104.41 Aligned_cols=202 Identities=15% Similarity=0.131 Sum_probs=125.3
Q ss_pred CCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccc
Q 045653 9 FPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKR 88 (272)
Q Consensus 9 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 88 (272)
.++.+++++++ .+++.+ +. ...++|++|+++++. +...+..... .+++|+.|+++++ .++.++.....
T Consensus 15 ~~~~~~l~~~~-~~l~~i---p~--~~~~~l~~L~l~~n~-l~~~~~~~~~----~l~~L~~L~l~~n-~l~~i~~~~~~ 82 (270)
T 2o6q_A 15 NNNKNSVDCSS-KKLTAI---PS--NIPADTKKLDLQSNK-LSSLPSKAFH----RLTKLRLLYLNDN-KLQTLPAGIFK 82 (270)
T ss_dssp ETTTTEEECTT-SCCSSC---CS--CCCTTCSEEECCSSC-CSCCCTTSSS----SCTTCCEEECCSS-CCSCCCTTTTS
T ss_pred CCCCCEEEccC-CCCCcc---CC--CCCCCCCEEECcCCC-CCeeCHHHhc----CCCCCCEEECCCC-ccCeeChhhhc
Confidence 34567777765 445544 11 123678888888773 4433322222 4788888888774 45554443211
Q ss_pred cccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEe
Q 045653 89 HSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVS 168 (272)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~ 168 (272)
. ++.|+ .+++..+.-.. .....+..+++|+.|++.++++..+.+. .+..+++|++|++.
T Consensus 83 ~-------------l~~L~-~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls 141 (270)
T 2o6q_A 83 E-------------LKNLE-TLWVTDNKLQA---LPIGVFDQLVNLAELRLDRNQLKSLPPR----VFDSLTKLTYLSLG 141 (270)
T ss_dssp S-------------CTTCC-EEECCSSCCCC---CCTTTTTTCSSCCEEECCSSCCCCCCTT----TTTTCTTCCEEECC
T ss_pred C-------------CCCCC-EEECCCCcCCc---CCHhHcccccCCCEEECCCCccCeeCHH----HhCcCcCCCEEECC
Confidence 1 33444 55555443221 1122346788999999998877764333 35578899999998
Q ss_pred cCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCE
Q 045653 169 NCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQS 248 (272)
Q Consensus 169 ~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~ 248 (272)
++ .+..+ +...+..+++|++|++.++ .++.++.. ....+++|+.|+++++ .++.++.... ..+++|+.
T Consensus 142 ~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~-------~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~ 209 (270)
T 2o6q_A 142 YN-ELQSL-PKGVFDKLTSLKELRLYNN-QLKRVPEG-------AFDKLTELKTLKLDNN-QLKRVPEGAF-DSLEKLKM 209 (270)
T ss_dssp SS-CCCCC-CTTTTTTCTTCCEEECCSS-CCSCCCTT-------TTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCE
T ss_pred CC-cCCcc-CHhHccCCcccceeEecCC-cCcEeChh-------HhccCCCcCEEECCCC-cCCcCCHHHh-ccccCCCE
Confidence 85 56666 5555778899999999886 35554421 1233588999999886 7777766432 46888999
Q ss_pred EeecCCC
Q 045653 249 LEATGCD 255 (272)
Q Consensus 249 L~i~~c~ 255 (272)
|++.+++
T Consensus 210 L~l~~N~ 216 (270)
T 2o6q_A 210 LQLQENP 216 (270)
T ss_dssp EECCSSC
T ss_pred EEecCCC
Confidence 9987765
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.42 E-value=1.6e-12 Score=108.39 Aligned_cols=111 Identities=20% Similarity=0.244 Sum_probs=63.2
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT 207 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 207 (272)
+..+++|+.|++.+|++..+.+. .+..+++|++|++.++ .++.+ +...+..+++|+.|++++| .++.++. .
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~--~ 175 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSLPDG----VFDKLTNLTYLNLAHN-QLQSL-PKGVFDKLTNLTELDLSYN-QLQSLPE--G 175 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT--T
T ss_pred hcCCcCCCEEECCCCcCCccCHH----HhccCCCCCEEECCCC-ccCcc-CHHHhccCccCCEEECCCC-CcCccCH--H
Confidence 34567777777777765543222 2445677777777764 45555 4344566777777777766 3443331 1
Q ss_pred ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCC
Q 045653 208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGC 254 (272)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c 254 (272)
....+++|+.|+++++ .++.++.... ..+++|++|++.++
T Consensus 176 -----~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 176 -----VFDKLTQLKDLRLYQN-QLKSVPDGVF-DRLTSLQYIWLHDN 215 (272)
T ss_dssp -----TTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSS
T ss_pred -----HhcCCccCCEEECCCC-cCCccCHHHH-hCCcCCCEEEccCC
Confidence 1223467777777665 4555444321 45667777777654
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.42 E-value=1.9e-12 Score=119.60 Aligned_cols=218 Identities=17% Similarity=0.130 Sum_probs=121.8
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccce-eccccCeEEecCCCCccccccCc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEG-IFAQISCLSLGNLPQLTSFCREV 86 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~~~~~~ 86 (272)
.+++|++|++.++..+... ..+.+++|++|+++++. +....... ... .+++|+.|+++++. +..++...
T Consensus 326 ~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~ls~n~-l~~~~~~~---~~~~~~~~L~~L~L~~n~-l~~~~~~~ 395 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF-----KKVALPSLSYLDLSRNA-LSFSGCCS---YSDLGTNSLRHLDLSFNG-AIIMSANF 395 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC-----CCCCCTTCCEEECCSSC-EEEEEECC---HHHHCCSCCCEEECCSCS-EEEECCCC
T ss_pred CCCccceeeccCCcCccch-----hhccCCCCCEEECcCCc-cCCCcchh---hhhccCCcccEeECCCCc-cccchhhc
Confidence 6788999999887555433 33467888888888873 33221000 011 46777777777653 44333211
Q ss_pred cc-cccc-ccc-----cc----ccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceE-eccCCCCC
Q 045653 87 KR-HSIS-SNT-----KD----SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEK-IWRSQVPA 154 (272)
Q Consensus 87 ~~-~~~~-~~~-----~~----~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-i~~~~~~~ 154 (272)
.. ..+. +.+ .. .....++.|+ .+++..+.-.. ..+..+..+++|+.|++.+|++.. +. |.
T Consensus 396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~ 467 (606)
T 3vq2_A 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL-YLDISYTNTKI---DFDGIFLGLTSLNTLKMAGNSFKDNTL----SN 467 (606)
T ss_dssp TTCTTCCEEECTTSEEESTTTTTTTTTCTTCC-EEECTTSCCEE---CCTTTTTTCTTCCEEECTTCEEGGGEE----CS
T ss_pred cCCCCCCeeECCCCccCCccChhhhhccccCC-EEECcCCCCCc---cchhhhcCCCCCCEEECCCCcCCCcch----HH
Confidence 10 0011 000 00 0111233444 45554443222 233445667777777777775443 12 22
Q ss_pred CCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccc
Q 045653 155 KFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFF 234 (272)
Q Consensus 155 ~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 234 (272)
.+..+++|++|++.+| .++.+ ++..+..+++|++|++++| .+..+.+ . ....+++|+.|+++++ +++.+
T Consensus 468 ~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~------~~~~l~~L~~L~l~~N-~l~~~ 536 (606)
T 3vq2_A 468 VFANTTNLTFLDLSKC-QLEQI-SWGVFDTLHRLQLLNMSHN-NLLFLDS-S------HYNQLYSLSTLDCSFN-RIETS 536 (606)
T ss_dssp CCTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSS-CCSCEEG-G------GTTTCTTCCEEECTTS-CCCCE
T ss_pred hhccCCCCCEEECCCC-cCCcc-ChhhhcccccCCEEECCCC-cCCCcCH-H------HccCCCcCCEEECCCC-cCccc
Confidence 3556777888887775 44444 3345667778888888776 3544431 1 1233478888888876 57777
Q ss_pred cCCCccccCC-CcCEEeecCCCC
Q 045653 235 YPGMHTSEWP-TLQSLEATGCDN 256 (272)
Q Consensus 235 ~~~~~~~~~~-~L~~L~i~~c~~ 256 (272)
+... ..++ +|++|++.+++-
T Consensus 537 p~~~--~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 537 KGIL--QHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp ESCG--GGSCTTCCEEECCSCCC
T ss_pred CHhH--hhhcccCcEEEccCCCc
Confidence 7764 5666 488888877553
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.40 E-value=9.3e-12 Score=104.27 Aligned_cols=203 Identities=13% Similarity=0.113 Sum_probs=137.9
Q ss_pred ceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccccc
Q 045653 13 ESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSIS 92 (272)
Q Consensus 13 ~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 92 (272)
+++++++ .+++.+ + .+..++|++|++.++ .+......... .+++|+.|+++++ .++.+.+.....
T Consensus 14 ~~~~c~~-~~l~~i---p--~~~~~~l~~L~l~~n-~i~~~~~~~~~----~~~~L~~L~l~~n-~l~~~~~~~~~~--- 78 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAV---P--VGIPAASQRIFLHGN-RISHVPAASFR----ACRNLTILWLHSN-VLARIDAAAFTG--- 78 (285)
T ss_dssp CEEECCS-SCCSSC---C--TTCCTTCSEEECTTS-CCCEECTTTTT----TCTTCCEEECCSS-CCCEECTTTTTT---
T ss_pred eEEEcCc-CCcccC---C--cCCCCCceEEEeeCC-cCCccCHHHcc----cCCCCCEEECCCC-ccceeCHhhcCC---
Confidence 3455544 344444 1 234579999999998 44554433222 5899999999986 555553322211
Q ss_pred cccccccccccceeecceeeeccCCCCccccc-ccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCc
Q 045653 93 SNTKDSQDQSMTAITCSYEVNLEDKLDTSTTL-FNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCH 171 (272)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~ 171 (272)
++.|+ .+++..+..+. .+ +..+..+++|+.|++.++++..+.+. .+..+++|++|++.++
T Consensus 79 ----------l~~L~-~L~l~~n~~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n- 139 (285)
T 1ozn_A 79 ----------LALLE-QLDLSDNAQLR---SVDPATFHGLGRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDN- 139 (285)
T ss_dssp ----------CTTCC-EEECCSCTTCC---CCCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSS-
T ss_pred ----------ccCCC-EEeCCCCCCcc---ccCHHHhcCCcCCCEEECCCCcCCEECHh----HhhCCcCCCEEECCCC-
Confidence 44555 77777665333 23 44567889999999999977764333 4667999999999985
Q ss_pred CCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccc-cCCCccccCCCcCEEe
Q 045653 172 KLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFF-YPGMHTSEWPTLQSLE 250 (272)
Q Consensus 172 ~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~L~~L~ 250 (272)
.+..+ +...+..+++|+.|+++++ .++.++.. ....+++|+.|+++++ .++.+ +..+ ..+++|++|+
T Consensus 140 ~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~-------~~~~l~~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~ 207 (285)
T 1ozn_A 140 ALQAL-PDDTFRDLGNLTHLFLHGN-RISSVPER-------AFRGLHSLDRLLLHQN-RVAHVHPHAF--RDLGRLMTLY 207 (285)
T ss_dssp CCCCC-CTTTTTTCTTCCEEECCSS-CCCEECTT-------TTTTCTTCCEEECCSS-CCCEECTTTT--TTCTTCCEEE
T ss_pred ccccc-CHhHhccCCCccEEECCCC-cccccCHH-------HhcCccccCEEECCCC-cccccCHhHc--cCcccccEee
Confidence 45666 5556788999999999997 56666521 1233599999999997 56666 3444 6789999999
Q ss_pred ecCCCCCccccc
Q 045653 251 ATGCDNLKIFGS 262 (272)
Q Consensus 251 i~~c~~l~~l~~ 262 (272)
++++ +++.++.
T Consensus 208 l~~n-~l~~~~~ 218 (285)
T 1ozn_A 208 LFAN-NLSALPT 218 (285)
T ss_dssp CCSS-CCSCCCH
T ss_pred CCCC-cCCcCCH
Confidence 9987 5665554
No 21
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.40 E-value=6e-12 Score=108.74 Aligned_cols=233 Identities=15% Similarity=0.138 Sum_probs=141.4
Q ss_pred CCCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcccc
Q 045653 3 KVPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSF 82 (272)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 82 (272)
.+|...+++|++|+++++ +++.+ . ......+++|++|++.++ .+......... .+++|+.|+++++ +++.+
T Consensus 45 ~iP~~~~~~L~~L~l~~n-~i~~~-~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~----~l~~L~~L~Ls~n-~l~~~ 115 (353)
T 2z80_A 45 SIPSGLTEAVKSLDLSNN-RITYI-S-NSDLQRCVNLQALVLTSN-GINTIEEDSFS----SLGSLEHLDLSYN-YLSNL 115 (353)
T ss_dssp SCCTTCCTTCCEEECTTS-CCCEE-C-TTTTTTCTTCCEEECTTS-CCCEECTTTTT----TCTTCCEEECCSS-CCSSC
T ss_pred cccccccccCcEEECCCC-cCccc-C-HHHhccCCCCCEEECCCC-ccCccCHhhcC----CCCCCCEEECCCC-cCCcC
Confidence 345556678999999885 35555 1 124566889999999888 45544332222 4678888888764 44444
Q ss_pred ccCccc--cccc-cc-----ccc----ccccccceeecceeeeccCCCCccccc-ccccCCCCCccEEEeccccceEecc
Q 045653 83 CREVKR--HSIS-SN-----TKD----SQDQSMTAITCSYEVNLEDKLDTSTTL-FNDKVRLPKLEALELHEINVEKIWR 149 (272)
Q Consensus 83 ~~~~~~--~~~~-~~-----~~~----~~~~~~~~l~~~l~i~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~l~~i~~ 149 (272)
+..... ..++ +. +.. ......+.|+ .+++..+.... .+ +..+..+++|+.|++.+|++..+.+
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~-~L~l~~n~~~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ-ILRVGNMDTFT---KIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC-EEEEEESSSCC---EECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc-EEECCCCcccc---ccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 432110 1111 00 000 0122344555 66666664333 22 2345677888888888887766533
Q ss_pred CCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCc-------------cc------
Q 045653 150 SQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTA-------------IQ------ 210 (272)
Q Consensus 150 ~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~-------------~~------ 210 (272)
. .+..+++|++|++.++. +..+ +......+++|+.|+++++. +..+...... ..
T Consensus 192 ~----~l~~l~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 192 K----SLKSIQNVSHLILHMKQ-HILL-LEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp T----TTTTCSEEEEEEEECSC-STTH-HHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred H----HHhccccCCeecCCCCc-cccc-hhhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCc
Confidence 3 45678899999998855 5555 55556678999999999873 4433211100 00
Q ss_pred -----cCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCC
Q 045653 211 -----VTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNL 257 (272)
Q Consensus 211 -----~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l 257 (272)
......+++|+.|+++++ +++.++.... ..+++|++|++++++-.
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~-~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIF-DRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSCBC
T ss_pred chhhhHHHHhcccCCCEEECCCC-CCCccCHHHH-hcCCCCCEEEeeCCCcc
Confidence 001345689999999886 7777776532 57899999999988643
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.40 E-value=1.7e-12 Score=110.46 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=31.8
Q ss_pred CCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCC
Q 045653 10 PLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNL 76 (272)
Q Consensus 10 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c 76 (272)
.++++|++.++. +......+...+.+++|++|+++++..+........+ .+++|++|+++++
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~----~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA----KLTQLHYLYITHT 111 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG----GCTTCSEEEEEEE
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh----cCCCCCEEECcCC
Confidence 467777777643 2220011344556677777777754444432221111 4566666666654
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.39 E-value=2.7e-11 Score=103.62 Aligned_cols=224 Identities=17% Similarity=0.190 Sum_probs=118.1
Q ss_pred CCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcccccc
Q 045653 5 PCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCR 84 (272)
Q Consensus 5 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 84 (272)
+....++|++|+++++ +++.+. +.....+++|++|++.++ .+........+ .+++|++|+++++ .++.++.
T Consensus 47 p~~~~~~l~~L~L~~n-~i~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~----~l~~L~~L~Ls~n-~l~~l~~ 117 (330)
T 1xku_A 47 PKDLPPDTALLDLQNN-KITEIK--DGDFKNLKNLHTLILINN-KISKISPGAFA----PLVKLERLYLSKN-QLKELPE 117 (330)
T ss_dssp CCSCCTTCCEEECCSS-CCCCBC--TTTTTTCTTCCEEECCSS-CCCCBCTTTTT----TCTTCCEEECCSS-CCSBCCS
T ss_pred CccCCCCCeEEECCCC-cCCEeC--hhhhccCCCCCEEECCCC-cCCeeCHHHhc----CCCCCCEEECCCC-cCCccCh
Confidence 4444567888888875 354441 123556888999999887 34433222222 5788888888875 4555554
Q ss_pred Cccccccc-ccc-----cc---ccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCC
Q 045653 85 EVKRHSIS-SNT-----KD---SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAK 155 (272)
Q Consensus 85 ~~~~~~~~-~~~-----~~---~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~ 155 (272)
.... .+. +.+ .. ......+.|+ .+++..+.-.. ....+..+..+++|+.|++.++++..+.. .
T Consensus 118 ~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-----~ 189 (330)
T 1xku_A 118 KMPK-TLQELRVHENEITKVRKSVFNGLNQMI-VVELGTNPLKS-SGIENGAFQGMKKLSYIRIADTNITTIPQ-----G 189 (330)
T ss_dssp SCCT-TCCEEECCSSCCCBBCHHHHTTCTTCC-EEECCSSCCCG-GGBCTTGGGGCTTCCEEECCSSCCCSCCS-----S
T ss_pred hhcc-cccEEECCCCcccccCHhHhcCCcccc-EEECCCCcCCc-cCcChhhccCCCCcCEEECCCCccccCCc-----c
Confidence 3321 111 000 00 0012233444 44444432211 00122334566777777777775554211 1
Q ss_pred CCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccccccc
Q 045653 156 FPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFY 235 (272)
Q Consensus 156 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 235 (272)
+ .++|++|++.++. +..+ ++..+..+++|+.|+++++ .+..+... ....+++|+.|+++++ .++.++
T Consensus 190 ~--~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-------~~~~l~~L~~L~L~~N-~l~~lp 256 (330)
T 1xku_A 190 L--PPSLTELHLDGNK-ITKV-DAASLKGLNNLAKLGLSFN-SISAVDNG-------SLANTPHLRELHLNNN-KLVKVP 256 (330)
T ss_dssp C--CTTCSEEECTTSC-CCEE-CTGGGTTCTTCCEEECCSS-CCCEECTT-------TGGGSTTCCEEECCSS-CCSSCC
T ss_pred c--cccCCEEECCCCc-CCcc-CHHHhcCCCCCCEEECCCC-cCceeChh-------hccCCCCCCEEECCCC-cCccCC
Confidence 1 2667777776643 4444 3345666777777777765 34444311 1222466667776665 555555
Q ss_pred CCCccccCCCcCEEeecCCCCCcccc
Q 045653 236 PGMHTSEWPTLQSLEATGCDNLKIFG 261 (272)
Q Consensus 236 ~~~~~~~~~~L~~L~i~~c~~l~~l~ 261 (272)
... ..+++|++|+++++ +++.++
T Consensus 257 ~~l--~~l~~L~~L~l~~N-~i~~~~ 279 (330)
T 1xku_A 257 GGL--ADHKYIQVVYLHNN-NISAIG 279 (330)
T ss_dssp TTT--TTCSSCCEEECCSS-CCCCCC
T ss_pred hhh--ccCCCcCEEECCCC-cCCccC
Confidence 544 45666666666665 344443
No 24
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.39 E-value=1.3e-11 Score=103.98 Aligned_cols=201 Identities=13% Similarity=0.122 Sum_probs=137.4
Q ss_pred CCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCc
Q 045653 7 DAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREV 86 (272)
Q Consensus 7 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 86 (272)
..+++++++.+.+ .+++.+ +. +..++++.|+++++. +......... .+++|+.|+++++ .++.++...
T Consensus 7 ~~l~~l~~l~~~~-~~l~~i---p~--~~~~~l~~L~L~~N~-l~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~~~ 74 (290)
T 1p9a_G 7 SKVASHLEVNCDK-RNLTAL---PP--DLPKDTTILHLSENL-LYTFSLATLM----PYTRLTQLNLDRA-ELTKLQVDG 74 (290)
T ss_dssp ECSTTCCEEECTT-SCCSSC---CS--CCCTTCCEEECTTSC-CSEEEGGGGT----TCTTCCEEECTTS-CCCEEECCS
T ss_pred cccCCccEEECCC-CCCCcC---CC--CCCCCCCEEEcCCCc-CCccCHHHhh----cCCCCCEEECCCC-ccCcccCCC
Confidence 3567888888887 456555 22 224789999999884 4433322222 5789999999875 455554421
Q ss_pred cccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEE
Q 045653 87 KRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLV 166 (272)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~ 166 (272)
. .+.|+ .+++..+.- . .++..+..+++|+.|+++++++..+.+. .+..+++|++|+
T Consensus 75 ~---------------l~~L~-~L~Ls~N~l-~---~l~~~~~~l~~L~~L~l~~N~l~~l~~~----~~~~l~~L~~L~ 130 (290)
T 1p9a_G 75 T---------------LPVLG-TLDLSHNQL-Q---SLPLLGQTLPALTVLDVSFNRLTSLPLG----ALRGLGELQELY 130 (290)
T ss_dssp C---------------CTTCC-EEECCSSCC-S---SCCCCTTTCTTCCEEECCSSCCCCCCSS----TTTTCTTCCEEE
T ss_pred C---------------CCcCC-EEECCCCcC-C---cCchhhccCCCCCEEECCCCcCcccCHH----HHcCCCCCCEEE
Confidence 1 34444 566655432 2 4555567889999999999987764333 466789999999
Q ss_pred EecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCc
Q 045653 167 VSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTL 246 (272)
Q Consensus 167 i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 246 (272)
+.++ .++.+ +...+..+++|+.|+++++ +++.++. +. ...+++|+.|+++++ .++.++... ...+.|
T Consensus 131 L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~l~~--~~-----~~~l~~L~~L~L~~N-~l~~ip~~~--~~~~~L 197 (290)
T 1p9a_G 131 LKGN-ELKTL-PPGLLTPTPKLEKLSLANN-NLTELPA--GL-----LNGLENLDTLLLQEN-SLYTIPKGF--FGSHLL 197 (290)
T ss_dssp CTTS-CCCCC-CTTTTTTCTTCCEEECTTS-CCSCCCT--TT-----TTTCTTCCEEECCSS-CCCCCCTTT--TTTCCC
T ss_pred CCCC-CCCcc-ChhhcccccCCCEEECCCC-cCCccCH--HH-----hcCcCCCCEEECCCC-cCCccChhh--cccccC
Confidence 9984 56666 5566778999999999986 4665552 11 233589999999885 788888876 567789
Q ss_pred CEEeecCCCC
Q 045653 247 QSLEATGCDN 256 (272)
Q Consensus 247 ~~L~i~~c~~ 256 (272)
+.+++.+.+-
T Consensus 198 ~~l~L~~Np~ 207 (290)
T 1p9a_G 198 PFAFLHGNPW 207 (290)
T ss_dssp SEEECCSCCB
T ss_pred CeEEeCCCCc
Confidence 9999987653
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.39 E-value=9.9e-12 Score=108.78 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=48.3
Q ss_pred HHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCccc
Q 045653 181 MIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIF 260 (272)
Q Consensus 181 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l 260 (272)
.+..+++|++|+++++ .++.+.. .....+++|+.|+++++ +++.++... ..+++|++|++++| +++.+
T Consensus 243 ~l~~l~~L~~L~Ls~n-~l~~~~~-------~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~l~~L~~L~L~~n-~l~~~ 310 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYN-ELEKIMY-------HPFVKMQRLERLYISNN-RLVALNLYG--QPIPTLKVLDLSHN-HLLHV 310 (390)
T ss_dssp GGGGCTTCSEEECCSS-CCCEEES-------GGGTTCSSCCEEECCSS-CCCEEECSS--SCCTTCCEEECCSS-CCCCC
T ss_pred HHcCCCCccEEECCCC-cCCCcCh-------hHccccccCCEEECCCC-cCcccCccc--CCCCCCCEEECCCC-cceec
Confidence 3556667777777665 3444431 11233588999999885 677776655 67899999999988 57677
Q ss_pred cccc
Q 045653 261 GSEL 264 (272)
Q Consensus 261 ~~~~ 264 (272)
|...
T Consensus 311 ~~~~ 314 (390)
T 3o6n_A 311 ERNQ 314 (390)
T ss_dssp GGGH
T ss_pred Cccc
Confidence 6554
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.39 E-value=2.1e-12 Score=111.63 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=84.1
Q ss_pred ccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccccccccccccccccceeecceeeec
Q 045653 35 SFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNL 114 (272)
Q Consensus 35 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~ 114 (272)
..++|++|+++++. +...+..... .+++|+.|+++++ .++.+++..... ++.|+ .+++..
T Consensus 50 ~~~~L~~L~l~~n~-i~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~~~~~~-------------l~~L~-~L~Ls~ 109 (353)
T 2z80_A 50 LTEAVKSLDLSNNR-ITYISNSDLQ----RCVNLQALVLTSN-GINTIEEDSFSS-------------LGSLE-HLDLSY 109 (353)
T ss_dssp CCTTCCEEECTTSC-CCEECTTTTT----TCTTCCEEECTTS-CCCEECTTTTTT-------------CTTCC-EEECCS
T ss_pred ccccCcEEECCCCc-CcccCHHHhc----cCCCCCEEECCCC-ccCccCHhhcCC-------------CCCCC-EEECCC
Confidence 35799999999984 5555442222 5899999999986 566554432211 33444 555554
Q ss_pred cCCCCccccccc-ccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEe
Q 045653 115 EDKLDTSTTLFN-DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDI 193 (272)
Q Consensus 115 ~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i 193 (272)
+.-. .++. .+..+++|+.|++.++++..+... ..+..+++|++|++.++..+..+ +...+.++++|++|++
T Consensus 110 n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~---~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 110 NYLS----NLSSSWFKPLSSLTFLNLLGNPYKTLGET---SLFSHLTKLQILRVGNMDTFTKI-QRKDFAGLTFLEELEI 181 (353)
T ss_dssp SCCS----SCCHHHHTTCTTCSEEECTTCCCSSSCSS---CSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEEEEEEE
T ss_pred CcCC----cCCHhHhCCCccCCEEECCCCCCcccCch---hhhccCCCCcEEECCCCcccccc-CHHHccCCCCCCEEEC
Confidence 4322 1222 245677778888877766543220 13456777777777776666665 4445667777777777
Q ss_pred ecCCCccee
Q 045653 194 CLCKGLLGI 202 (272)
Q Consensus 194 ~~c~~l~~~ 202 (272)
.++. +..+
T Consensus 182 ~~n~-l~~~ 189 (353)
T 2z80_A 182 DASD-LQSY 189 (353)
T ss_dssp EETT-CCEE
T ss_pred CCCC-cCcc
Confidence 7763 4443
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.39 E-value=7.1e-12 Score=107.81 Aligned_cols=214 Identities=11% Similarity=0.149 Sum_probs=109.7
Q ss_pred CCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCc
Q 045653 7 DAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREV 86 (272)
Q Consensus 7 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 86 (272)
..+++|++|+++++. ++.+ +....+++|+.|++.+|..+.....- . .+++|+.|+++++. +..++...
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~--~----~l~~L~~L~l~~~~-~~~~~~~~ 174 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDI----SPLANLTKMYSLNLGANHNLSDLSPL--S----NMTGLNYLTVTESK-VKDVTPIA 174 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCC----GGGTTCTTCCEEECTTCTTCCCCGGG--T----TCTTCCEEECCSSC-CCCCGGGG
T ss_pred cCCCcCCEEECcCCc-ccCc----hhhccCCceeEEECCCCCCcccccch--h----hCCCCcEEEecCCC-cCCchhhc
Confidence 356788888888753 3333 22556788888888888655433221 1 35666666666542 22221100
Q ss_pred cccccc-ccc-----cc-ccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCC
Q 045653 87 KRHSIS-SNT-----KD-SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRF 159 (272)
Q Consensus 87 ~~~~~~-~~~-----~~-~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l 159 (272)
....+. ..+ .. ......+.++ .+.+..+.-.. +. .+..+++|+.|++.+|++..+.+ +..+
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~-~L~l~~n~l~~----~~-~~~~~~~L~~L~l~~n~l~~~~~------~~~l 242 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDISPLASLTSLH-YFTAYVNQITD----IT-PVANMTRLNSLKIGNNKITDLSP------LANL 242 (347)
T ss_dssp GCTTCSEEECTTSCCCCCGGGGGCTTCC-EEECCSSCCCC----CG-GGGGCTTCCEEECCSSCCCCCGG------GTTC
T ss_pred cCCCCCEEEccCCcccccccccCCCccc-eeecccCCCCC----Cc-hhhcCCcCCEEEccCCccCCCcc------hhcC
Confidence 000000 000 00 0011122233 33333332111 11 14556777777777775554211 3356
Q ss_pred CCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccC-CC
Q 045653 160 QSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYP-GM 238 (272)
Q Consensus 160 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~ 238 (272)
++|++|++.++ .+..+ ..+..+++|+.|++++| .+..+. ....+++|+.|++++| .++.... ..
T Consensus 243 ~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~l~~n-~l~~~~---------~~~~l~~L~~L~L~~n-~l~~~~~~~l 307 (347)
T 4fmz_A 243 SQLTWLEIGTN-QISDI---NAVKDLTKLKMLNVGSN-QISDIS---------VLNNLSQLNSLFLNNN-QLGNEDMEVI 307 (347)
T ss_dssp TTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSS-CCCCCG---------GGGGCTTCSEEECCSS-CCCGGGHHHH
T ss_pred CCCCEEECCCC-ccCCC---hhHhcCCCcCEEEccCC-ccCCCh---------hhcCCCCCCEEECcCC-cCCCcChhHh
Confidence 77777777774 44444 34566777777777776 344432 1223477777777776 3333322 22
Q ss_pred ccccCCCcCEEeecCCCCCccccc
Q 045653 239 HTSEWPTLQSLEATGCDNLKIFGS 262 (272)
Q Consensus 239 ~~~~~~~L~~L~i~~c~~l~~l~~ 262 (272)
..+++|++|++++|+ ++.+++
T Consensus 308 --~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 308 --GGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp --HTCTTCSEEECCSSS-CCCCGG
T ss_pred --hccccCCEEEccCCc-cccccC
Confidence 456777777777775 544433
No 28
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.38 E-value=6.5e-14 Score=120.06 Aligned_cols=39 Identities=28% Similarity=0.320 Sum_probs=19.4
Q ss_pred CCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCC
Q 045653 158 RFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCK 197 (272)
Q Consensus 158 ~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 197 (272)
.+++|++|++.+|..+++. ....+..+++|++|++.+|.
T Consensus 220 ~~~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKND-CFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HCTTCSEEECTTCTTCCGG-GGGGGGGCTTCCEEECTTCT
T ss_pred hCCCCCEEeCCCCCcCCHH-HHHHHhCCCCCCEeeCCCCC
Confidence 3555555555555544432 11234455555555555554
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.38 E-value=1.6e-11 Score=113.35 Aligned_cols=227 Identities=13% Similarity=0.158 Sum_probs=132.5
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc---c
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC---R 84 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~---~ 84 (272)
.+++|++|++.++. ++.+. +.....+++|++|++.++......+..... .+++|+.|+++++. +.... .
T Consensus 299 ~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~----~l~~L~~L~l~~n~-l~~~~~~~~ 370 (606)
T 3t6q_A 299 GLSTLKKLVLSANK-FENLC--QISASNFPSLTHLSIKGNTKRLELGTGCLE----NLENLRELDLSHDD-IETSDCCNL 370 (606)
T ss_dssp SCTTCCEEECTTCC-CSBGG--GGCGGGCTTCSEEECCSCSSCCBCCSSTTT----TCTTCCEEECCSSC-CCEEEESTT
T ss_pred ccccCCEEECccCC-cCcCc--hhhhhccCcCCEEECCCCCcccccchhhhh----ccCcCCEEECCCCc-cccccCcch
Confidence 45788888888763 33331 234456788888888877433222221111 35666666666542 22221 0
Q ss_pred Ccc-ccccc-cc-----ccc---ccccccceeecceeeeccCCCCccccc-ccccCCCCCccEEEeccccceEeccCCCC
Q 045653 85 EVK-RHSIS-SN-----TKD---SQDQSMTAITCSYEVNLEDKLDTSTTL-FNDKVRLPKLEALELHEINVEKIWRSQVP 153 (272)
Q Consensus 85 ~~~-~~~~~-~~-----~~~---~~~~~~~~l~~~l~i~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~l~~i~~~~~~ 153 (272)
... ...+. +. +.. ......+.|+ .+++..+.-.. .. ...+..+++|+.|++.+|.+..+.+
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~---- 442 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE-LLDLAFTRLKV---KDAQSPFQNLHLLKVLNLSHSLLDISSE---- 442 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS-EEECTTCCEEC---CTTCCTTTTCTTCCEEECTTCCCBTTCT----
T ss_pred hcccCCCCCEEECCCCcCCcCCHHHhcCCccCC-eEECCCCcCCC---cccchhhhCcccCCEEECCCCccCCcCH----
Confidence 000 00011 00 000 0112244555 66665544321 11 2236788999999999997765322
Q ss_pred CCCCCCCCcCEEEEecCcCCcccc-chHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccc
Q 045653 154 AKFPRFQSLTRLVVSNCHKLKYLF-SASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLR 232 (272)
Q Consensus 154 ~~~~~l~~L~~L~i~~c~~l~~l~-~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 232 (272)
..+..+++|++|++.++.--...+ ....+..+++|+.|++++| .++.+... ....+++|+.|+++++ +++
T Consensus 443 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-------~~~~l~~L~~L~Ls~N-~l~ 513 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQH-------AFTSLKMMNHVDLSHN-RLT 513 (606)
T ss_dssp TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTT-------TTTTCTTCCEEECCSS-CCC
T ss_pred HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChh-------hhccccCCCEEECCCC-ccC
Confidence 246679999999999975432111 1235788999999999998 46665421 1334599999999997 555
Q ss_pred cccC-CCccccCCCcCEEeecCCCCCcccccc
Q 045653 233 FFYP-GMHTSEWPTLQSLEATGCDNLKIFGSE 263 (272)
Q Consensus 233 ~~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~~ 263 (272)
.... .. ..++.| +|+++++ +++.+++.
T Consensus 514 ~~~~~~l--~~l~~L-~L~L~~N-~l~~~~~~ 541 (606)
T 3t6q_A 514 SSSIEAL--SHLKGI-YLNLASN-HISIILPS 541 (606)
T ss_dssp GGGGGGG--TTCCSC-EEECCSS-CCCCCCGG
T ss_pred cCChhHh--Cccccc-EEECcCC-cccccCHh
Confidence 5443 33 578889 9999988 45555543
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.37 E-value=2.5e-11 Score=108.17 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=38.8
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCC
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLP 77 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 77 (272)
..++|++|+++++ .++.+ . +.....+++|++|+++++......+..... .+++|++|+++++.
T Consensus 28 l~~~l~~L~Ls~n-~i~~~-~-~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~----~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 28 LPAHVNYVDLSLN-SIAEL-N-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFR----GLSSLIILKLDYNQ 90 (455)
T ss_dssp CCTTCCEEECCSS-CCCEE-C-TTTTSSCTTCCEEECCCCSTTCEECTTTTT----TCTTCCEEECTTCT
T ss_pred CCCccCEEEecCC-ccCcC-C-hhHhccCccccEEECcCCcccceECccccc----ccccCCEEeCCCCc
Confidence 3367888888875 34444 1 234556888888888887543333332222 46777778777753
No 31
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.36 E-value=6e-12 Score=106.47 Aligned_cols=225 Identities=17% Similarity=0.173 Sum_probs=108.1
Q ss_pred CCCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccce-eccccCeEEecCCCCccc
Q 045653 3 KVPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEG-IFAQISCLSLGNLPQLTS 81 (272)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~ 81 (272)
.+|...+++|++|+++++ +++.+ . ......+++|++|+++++. +...+... ... .+++|+.|+++++ .+..
T Consensus 21 ~ip~~~~~~l~~L~L~~n-~l~~i-~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~~~~~~L~~L~Ls~n-~i~~ 92 (306)
T 2z66_A 21 SVPTGIPSSATRLELESN-KLQSL-P-HGVFDKLTQLTKLSLSSNG-LSFKGCCS---QSDFGTTSLKYLDLSFN-GVIT 92 (306)
T ss_dssp SCCSCCCTTCCEEECCSS-CCCCC-C-TTTTTTCTTCSEEECCSSC-CCEEEEEE---HHHHSCSCCCEEECCSC-SEEE
T ss_pred cCCCCCCCCCCEEECCCC-ccCcc-C-HhHhhccccCCEEECCCCc-cCcccCcc---cccccccccCEEECCCC-cccc
Confidence 345556678999999885 35554 1 1224568999999999873 33221000 011 4677777777765 3333
Q ss_pred cccCccc-cccc-ccc-----cc----ccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceE-ecc
Q 045653 82 FCREVKR-HSIS-SNT-----KD----SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEK-IWR 149 (272)
Q Consensus 82 ~~~~~~~-~~~~-~~~-----~~----~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-i~~ 149 (272)
++..... ..++ +.+ .. .....++.|+ .+++..+.-.. ..+..+..+++|+.|++.+|.+.. +.
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~- 167 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI-YLDISHTHTRV---AFNGIFNGLSSLEVLKMAGNSFQENFL- 167 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCC-EEECTTSCCEE---CSTTTTTTCTTCCEEECTTCEEGGGEE-
T ss_pred ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCC-EEECCCCcCCc---cchhhcccCcCCCEEECCCCccccccc-
Confidence 3321110 0000 000 00 0011122333 33333332111 122234455666666666664432 11
Q ss_pred CCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccc
Q 045653 150 SQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLP 229 (272)
Q Consensus 150 ~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 229 (272)
|..+..+++|++|++.++ .++.+ ++..+..+++|+.|+++++. ++.+... ....+++|+.|+++++
T Consensus 168 ---~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~-------~~~~l~~L~~L~L~~N- 233 (306)
T 2z66_A 168 ---PDIFTELRNLTFLDLSQC-QLEQL-SPTAFNSLSSLQVLNMSHNN-FFSLDTF-------PYKCLNSLQVLDYSLN- 233 (306)
T ss_dssp ---CSCCTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECTTSC-CSBCCSG-------GGTTCTTCCEEECTTS-
T ss_pred ---hhHHhhCcCCCEEECCCC-CcCCc-CHHHhcCCCCCCEEECCCCc-cCccChh-------hccCcccCCEeECCCC-
Confidence 123445666666666663 33444 33445566666666666652 3333210 1223467777777765
Q ss_pred ccccccCCCccccC-CCcCEEeecCCC
Q 045653 230 KLRFFYPGMHTSEW-PTLQSLEATGCD 255 (272)
Q Consensus 230 ~l~~~~~~~~~~~~-~~L~~L~i~~c~ 255 (272)
.++....... ..+ ++|++|++++++
T Consensus 234 ~l~~~~~~~~-~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 234 HIMTSKKQEL-QHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCCBCSSSSC-CCCCTTCCEEECTTCC
T ss_pred CCcccCHHHH-HhhhccCCEEEccCCC
Confidence 3443332221 344 367777776654
No 32
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.36 E-value=7.2e-12 Score=119.12 Aligned_cols=231 Identities=13% Similarity=-0.004 Sum_probs=129.0
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK 87 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 87 (272)
.+++|++|+++++.--..+ +...+.+++|+.|++.+|..-...+ .... .+++|+.|+++++.-...+|....
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~----~l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTI---PSSLGSLSKLRDLKLWLNMLEGEIP-QELM----YVKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp GCTTCCEEECCSSEEESCC---CGGGGGCTTCCEEECCSSCCCSCCC-GGGG----GCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cCCCCCEEECcCCcccCcc---cHHHhcCCCCCEEECCCCcccCcCC-HHHc----CCCCceEEEecCCcccCcCCHHHh
Confidence 4578888888886322222 3445567888888888774321111 1111 356666666665532222222111
Q ss_pred c-cccc-ccc-----c---cccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccC-------
Q 045653 88 R-HSIS-SNT-----K---DSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRS------- 150 (272)
Q Consensus 88 ~-~~~~-~~~-----~---~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~------- 150 (272)
. ..+. +.+ . ......++.|+ .+++..+.-.. .++..+..+++|+.|++.+|++....+.
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~---~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 563 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLA-ILKLSNNSFSG---NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCC-EEECCSSCCEE---ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTT
T ss_pred cCCCCCEEEccCCccCCcCChHHhcCCCCC-EEECCCCcccC---cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccc
Confidence 0 0010 000 0 00011234444 55565554332 4555667778888888887744311110
Q ss_pred -----------------------------------------------------------CCCCCCCCCCCcCEEEEecCc
Q 045653 151 -----------------------------------------------------------QVPAKFPRFQSLTRLVVSNCH 171 (272)
Q Consensus 151 -----------------------------------------------------------~~~~~~~~l~~L~~L~i~~c~ 171 (272)
..|..+..+++|++|+++++.
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~ 643 (768)
T 3rgz_A 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643 (768)
T ss_dssp CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC
T ss_pred hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc
Confidence 112234456788888888754
Q ss_pred CCccccchHHHhccccCcEEEeecCCCcc-eeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEe
Q 045653 172 KLKYLFSASMIRSVEQLQHLDICLCKGLL-GIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLE 250 (272)
Q Consensus 172 ~l~~l~~~~~~~~l~~L~~L~i~~c~~l~-~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~ 250 (272)
++...| ..++++++|+.|+++++. ++ .++ . .+..+++|+.|+++++.--..+|... ..+++|++|+
T Consensus 644 -l~g~ip-~~l~~l~~L~~L~Ls~N~-l~g~ip--~------~l~~L~~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L~ 710 (768)
T 3rgz_A 644 -LSGYIP-KEIGSMPYLFILNLGHND-ISGSIP--D------EVGDLRGLNILDLSSNKLDGRIPQAM--SALTMLTEID 710 (768)
T ss_dssp -CBSCCC-GGGGGCTTCCEEECCSSC-CCSCCC--G------GGGGCTTCCEEECCSSCCEECCCGGG--GGCCCCSEEE
T ss_pred -ccccCC-HHHhccccCCEEeCcCCc-cCCCCC--h------HHhCCCCCCEEECCCCcccCcCChHH--hCCCCCCEEE
Confidence 443324 457788889999888864 43 333 1 23446899999999975444666666 7889999999
Q ss_pred ecCCCCCcccccc
Q 045653 251 ATGCDNLKIFGSE 263 (272)
Q Consensus 251 i~~c~~l~~l~~~ 263 (272)
+++++--..+|.+
T Consensus 711 ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 711 LSNNNLSGPIPEM 723 (768)
T ss_dssp CCSSEEEEECCSS
T ss_pred CcCCcccccCCCc
Confidence 9988544445544
No 33
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.36 E-value=5.6e-12 Score=107.40 Aligned_cols=215 Identities=12% Similarity=0.050 Sum_probs=112.9
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK 87 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 87 (272)
.+++|++|+++++ +++.+. +.....+++|++|+++++.- ..... .. .+++|+.|+++++ .++.++....
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~Ls~n~l-~~~~~--~~----~l~~L~~L~Ls~n-~l~~l~~~~~ 100 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQIS--AADLAPFTKLELLNLSSNVL-YETLD--LE----SLSTLRTLDLNNN-YVQELLVGPS 100 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCC--HHHHTTCTTCCEEECTTSCC-EEEEE--ET----TCTTCCEEECCSS-EEEEEEECTT
T ss_pred cCCCCCEEECcCC-ccCcCC--HHHhhCCCcCCEEECCCCcC-Ccchh--hh----hcCCCCEEECcCC-ccccccCCCC
Confidence 3568999999885 444441 13345689999999998843 32221 11 4788888888876 4555443211
Q ss_pred cccccc---ccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCE
Q 045653 88 RHSISS---NTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTR 164 (272)
Q Consensus 88 ~~~~~~---~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~ 164 (272)
-..+.. .+.......++.|+ .+++..+.-.. ..+..+..+++|+.|++++|.+..+.+... ...+++|++
T Consensus 101 L~~L~l~~n~l~~~~~~~~~~L~-~L~l~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~l~~L~~ 173 (317)
T 3o53_A 101 IETLHAANNNISRVSCSRGQGKK-NIYLANNKITM---LRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEH 173 (317)
T ss_dssp CCEEECCSSCCSEEEECCCSSCE-EEECCSSCCCS---GGGBCTGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCE
T ss_pred cCEEECCCCccCCcCccccCCCC-EEECCCCCCCC---ccchhhhccCCCCEEECCCCCCCcccHHHH---hhccCcCCE
Confidence 110000 00000011123333 44443332211 112233455666666666665554322211 123566666
Q ss_pred EEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCC
Q 045653 165 LVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWP 244 (272)
Q Consensus 165 L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 244 (272)
|++.++. ++.+ + ....+++|+.|+++++ .++.++. . ...+++|+.|+++++ .++.++... ..++
T Consensus 174 L~L~~N~-l~~~-~--~~~~l~~L~~L~Ls~N-~l~~l~~--~------~~~l~~L~~L~L~~N-~l~~l~~~~--~~l~ 237 (317)
T 3o53_A 174 LNLQYNF-IYDV-K--GQVVFAKLKTLDLSSN-KLAFMGP--E------FQSAAGVTWISLRNN-KLVLIEKAL--RFSQ 237 (317)
T ss_dssp EECTTSC-CCEE-E--CCCCCTTCCEEECCSS-CCCEECG--G------GGGGTTCSEEECTTS-CCCEECTTC--CCCT
T ss_pred EECCCCc-Cccc-c--cccccccCCEEECCCC-cCCcchh--h------hcccCcccEEECcCC-cccchhhHh--hcCC
Confidence 6666633 4444 2 1224666666666665 3544431 1 222477777777775 666666654 5677
Q ss_pred CcCEEeecCCCC
Q 045653 245 TLQSLEATGCDN 256 (272)
Q Consensus 245 ~L~~L~i~~c~~ 256 (272)
+|+.|++++++-
T Consensus 238 ~L~~L~l~~N~~ 249 (317)
T 3o53_A 238 NLEHFDLRGNGF 249 (317)
T ss_dssp TCCEEECTTCCC
T ss_pred CCCEEEccCCCc
Confidence 777777777654
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.35 E-value=1.5e-11 Score=103.99 Aligned_cols=213 Identities=13% Similarity=0.104 Sum_probs=111.4
Q ss_pred ceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc---cCcc-c
Q 045653 13 ESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC---REVK-R 88 (272)
Q Consensus 13 ~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~---~~~~-~ 88 (272)
+.+++++ .+++.+ +. +..++|++|+++++. +...+..... .+++|+.|+++++ .+.... .... .
T Consensus 10 ~~l~c~~-~~l~~i---p~--~~~~~l~~L~L~~n~-l~~i~~~~~~----~l~~L~~L~L~~n-~l~~~~~~~~~~~~~ 77 (306)
T 2z66_A 10 TEIRCNS-KGLTSV---PT--GIPSSATRLELESNK-LQSLPHGVFD----KLTQLTKLSLSSN-GLSFKGCCSQSDFGT 77 (306)
T ss_dssp TEEECCS-SCCSSC---CS--CCCTTCCEEECCSSC-CCCCCTTTTT----TCTTCSEEECCSS-CCCEEEEEEHHHHSC
T ss_pred CEEEcCC-CCcccC---CC--CCCCCCCEEECCCCc-cCccCHhHhh----ccccCCEEECCCC-ccCcccCcccccccc
Confidence 4555554 345555 22 235799999999984 4544433222 5899999999986 333221 1100 0
Q ss_pred cccc-ccc-----cc--ccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCC
Q 045653 89 HSIS-SNT-----KD--SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQ 160 (272)
Q Consensus 89 ~~~~-~~~-----~~--~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~ 160 (272)
..+. +.+ .. ......+.|+ .+++..+.-.. ......+..+++|+.|++.+|.+..+.+. .+..++
T Consensus 78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~-~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~ 150 (306)
T 2z66_A 78 TSLKYLDLSFNGVITMSSNFLGLEQLE-HLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTHTRVAFNG----IFNGLS 150 (306)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCC-EEECTTSEEES--STTTTTTTTCTTCCEEECTTSCCEECSTT----TTTTCT
T ss_pred cccCEEECCCCccccChhhcCCCCCCC-EEECCCCcccc--cccchhhhhccCCCEEECCCCcCCccchh----hcccCc
Confidence 1111 000 00 0011122222 33332221100 00012345566777777776655543222 344567
Q ss_pred CcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCcc
Q 045653 161 SLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHT 240 (272)
Q Consensus 161 ~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 240 (272)
+|++|++.++.-.... .+..+..+++|+.|+++++ .++.+.. .....+++|+.|+++++ .++.++... .
T Consensus 151 ~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~~-~ 219 (306)
T 2z66_A 151 SLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQC-QLEQLSP-------TAFNSLSSLQVLNMSHN-NFFSLDTFP-Y 219 (306)
T ss_dssp TCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTS-CCCEECT-------TTTTTCTTCCEEECTTS-CCSBCCSGG-G
T ss_pred CCCEEECCCCcccccc-chhHHhhCcCCCEEECCCC-CcCCcCH-------HHhcCCCCCCEEECCCC-ccCccChhh-c
Confidence 7777777765422212 1234566777777777776 3544431 11234588999999886 566655422 1
Q ss_pred ccCCCcCEEeecCCC
Q 045653 241 SEWPTLQSLEATGCD 255 (272)
Q Consensus 241 ~~~~~L~~L~i~~c~ 255 (272)
..+++|++|++++++
T Consensus 220 ~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 220 KCLNSLQVLDYSLNH 234 (306)
T ss_dssp TTCTTCCEEECTTSC
T ss_pred cCcccCCEeECCCCC
Confidence 568899999999884
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.34 E-value=2.6e-11 Score=104.28 Aligned_cols=210 Identities=17% Similarity=0.166 Sum_probs=99.7
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK 87 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 87 (272)
.+++|++|+++++ .++++ +....+++|++|++.+| .+...+. .. .+++|++|+++++. +..++....
T Consensus 64 ~~~~L~~L~l~~n-~i~~~----~~~~~l~~L~~L~L~~n-~i~~~~~--~~----~l~~L~~L~l~~n~-i~~~~~~~~ 130 (347)
T 4fmz_A 64 YLTNLEYLNLNGN-QITDI----SPLSNLVKLTNLYIGTN-KITDISA--LQ----NLTNLRELYLNEDN-ISDISPLAN 130 (347)
T ss_dssp GCTTCCEEECCSS-CCCCC----GGGTTCTTCCEEECCSS-CCCCCGG--GT----TCTTCSEEECTTSC-CCCCGGGTT
T ss_pred hcCCccEEEccCC-ccccc----hhhhcCCcCCEEEccCC-cccCchH--Hc----CCCcCCEEECcCCc-ccCchhhcc
Confidence 4678888888886 44444 22556788888888877 3333211 11 45666666666542 333222100
Q ss_pred ccccc-ccc------c-cccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCC--------
Q 045653 88 RHSIS-SNT------K-DSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQ-------- 151 (272)
Q Consensus 88 ~~~~~-~~~------~-~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~-------- 151 (272)
...+. ..+ . .......+.++ .+.+..+.-.. +. .+..+++|+.|++.+|++..+..-.
T Consensus 131 l~~L~~L~l~~n~~~~~~~~~~~l~~L~-~L~l~~~~~~~----~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 204 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLSPLSNMTGLN-YLTVTESKVKD----VT-PIANLTDLYSLSLNYNQIEDISPLASLTSLHYF 204 (347)
T ss_dssp CTTCCEEECTTCTTCCCCGGGTTCTTCC-EEECCSSCCCC----CG-GGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEE
T ss_pred CCceeEEECCCCCCcccccchhhCCCCc-EEEecCCCcCC----ch-hhccCCCCCEEEccCCcccccccccCCCcccee
Confidence 00000 000 0 00011122333 34444332211 11 1344556666666655443321100
Q ss_pred ---------CCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCe
Q 045653 152 ---------VPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVST 222 (272)
Q Consensus 152 ---------~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~ 222 (272)
.+ .+..+++|++|++.+|. ++.+ +. +..+++|+.|++++| .++.+ .....+++|+.
T Consensus 205 ~l~~n~l~~~~-~~~~~~~L~~L~l~~n~-l~~~-~~--~~~l~~L~~L~l~~n-~l~~~---------~~~~~l~~L~~ 269 (347)
T 4fmz_A 205 TAYVNQITDIT-PVANMTRLNSLKIGNNK-ITDL-SP--LANLSQLTWLEIGTN-QISDI---------NAVKDLTKLKM 269 (347)
T ss_dssp ECCSSCCCCCG-GGGGCTTCCEEECCSSC-CCCC-GG--GTTCTTCCEEECCSS-CCCCC---------GGGTTCTTCCE
T ss_pred ecccCCCCCCc-hhhcCCcCCEEEccCCc-cCCC-cc--hhcCCCCCEEECCCC-ccCCC---------hhHhcCCCcCE
Confidence 00 02234555555555532 2333 21 445555555555554 23222 11334578888
Q ss_pred eecccccccccccCCCccccCCCcCEEeecCCC
Q 045653 223 LRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 223 L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 255 (272)
|+++++ .++.++. . ..+++|++|++++|+
T Consensus 270 L~l~~n-~l~~~~~-~--~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 270 LNVGSN-QISDISV-L--NNLSQLNSLFLNNNQ 298 (347)
T ss_dssp EECCSS-CCCCCGG-G--GGCTTCSEEECCSSC
T ss_pred EEccCC-ccCCChh-h--cCCCCCCEEECcCCc
Confidence 888876 5665532 2 577888888888874
No 36
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.34 E-value=1.1e-11 Score=105.24 Aligned_cols=190 Identities=16% Similarity=0.202 Sum_probs=128.3
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK 87 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 87 (272)
.+++|++|.+.++ +++.+ +....+++|++|++++| .+..... .. .+++|+.|+++++. ++.++...
T Consensus 39 ~l~~L~~L~l~~~-~i~~l----~~~~~l~~L~~L~L~~n-~i~~~~~--~~----~l~~L~~L~L~~n~-l~~~~~~~- 104 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTI----EGVQYLNNLIGLELKDN-QITDLAP--LK----NLTKITELELSGNP-LKNVSAIA- 104 (308)
T ss_dssp HHHTCCEEECTTS-CCCCC----TTGGGCTTCCEEECCSS-CCCCCGG--GT----TCCSCCEEECCSCC-CSCCGGGT-
T ss_pred HcCCcCEEEeeCC-CccCc----hhhhccCCCCEEEccCC-cCCCChh--Hc----cCCCCCEEEccCCc-CCCchhhc-
Confidence 4678999999886 44444 24556899999999988 4444332 11 58899999999864 55543211
Q ss_pred ccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEE
Q 045653 88 RHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVV 167 (272)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i 167 (272)
.++.|+ .+++..+.-.. ++ .+..+++|+.|++.+|++..+.+ +..+++|++|++
T Consensus 105 --------------~l~~L~-~L~l~~n~l~~----~~-~l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l 158 (308)
T 1h6u_A 105 --------------GLQSIK-TLDLTSTQITD----VT-PLAGLSNLQVLYLDLNQITNISP------LAGLTNLQYLSI 158 (308)
T ss_dssp --------------TCTTCC-EEECTTSCCCC----CG-GGTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEEC
T ss_pred --------------CCCCCC-EEECCCCCCCC----ch-hhcCCCCCCEEECCCCccCcCcc------ccCCCCccEEEc
Confidence 134444 66666554221 22 25778899999999987665321 446889999999
Q ss_pred ecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcC
Q 045653 168 SNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQ 247 (272)
Q Consensus 168 ~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 247 (272)
.++ .+.++ +. +..+++|+.|+++++ .+..+.. ...+++|+.|+++++ .++.++. . ..+++|+
T Consensus 159 ~~n-~l~~~-~~--l~~l~~L~~L~l~~n-~l~~~~~---------l~~l~~L~~L~L~~N-~l~~~~~-l--~~l~~L~ 220 (308)
T 1h6u_A 159 GNA-QVSDL-TP--LANLSKLTTLKADDN-KISDISP---------LASLPNLIEVHLKNN-QISDVSP-L--ANTSNLF 220 (308)
T ss_dssp CSS-CCCCC-GG--GTTCTTCCEEECCSS-CCCCCGG---------GGGCTTCCEEECTTS-CCCBCGG-G--TTCTTCC
T ss_pred cCC-cCCCC-hh--hcCCCCCCEEECCCC-ccCcChh---------hcCCCCCCEEEccCC-ccCcccc-c--cCCCCCC
Confidence 885 56666 32 778899999999886 3554432 234588999999886 6666653 3 6788999
Q ss_pred EEeecCCC
Q 045653 248 SLEATGCD 255 (272)
Q Consensus 248 ~L~i~~c~ 255 (272)
.|++++++
T Consensus 221 ~L~l~~N~ 228 (308)
T 1h6u_A 221 IVTLTNQT 228 (308)
T ss_dssp EEEEEEEE
T ss_pred EEEccCCe
Confidence 99988764
No 37
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.34 E-value=4.4e-11 Score=99.46 Aligned_cols=186 Identities=14% Similarity=0.153 Sum_probs=125.6
Q ss_pred CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653 4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC 83 (272)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 83 (272)
+|....+++++|+++++ +++.+ . +.....+++|++|++.++ .+...+..... .+++|+.|+++++ .++.++
T Consensus 31 ip~~~~~~l~~L~l~~n-~l~~~-~-~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~----~l~~L~~L~l~~n-~l~~~~ 101 (270)
T 2o6q_A 31 IPSNIPADTKKLDLQSN-KLSSL-P-SKAFHRLTKLRLLYLNDN-KLQTLPAGIFK----ELKNLETLWVTDN-KLQALP 101 (270)
T ss_dssp CCSCCCTTCSEEECCSS-CCSCC-C-TTSSSSCTTCCEEECCSS-CCSCCCTTTTS----SCTTCCEEECCSS-CCCCCC
T ss_pred cCCCCCCCCCEEECcCC-CCCee-C-HHHhcCCCCCCEEECCCC-ccCeeChhhhc----CCCCCCEEECCCC-cCCcCC
Confidence 34445568999999985 35555 1 134567899999999997 34444332222 5899999999985 455555
Q ss_pred cCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcC
Q 045653 84 REVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLT 163 (272)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~ 163 (272)
...... ++.|+ .+.+..+.-.. ..+..+..+++|+.|++.++++..+.+. .+..+++|+
T Consensus 102 ~~~~~~-------------l~~L~-~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~ 160 (270)
T 2o6q_A 102 IGVFDQ-------------LVNLA-ELRLDRNQLKS---LPPRVFDSLTKLTYLSLGYNELQSLPKG----VFDKLTSLK 160 (270)
T ss_dssp TTTTTT-------------CSSCC-EEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCC
T ss_pred HhHccc-------------ccCCC-EEECCCCccCe---eCHHHhCcCcCCCEEECCCCcCCccCHh----HccCCcccc
Confidence 432221 34455 66666543222 1223457889999999999987764332 356789999
Q ss_pred EEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccc
Q 045653 164 RLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLP 229 (272)
Q Consensus 164 ~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 229 (272)
+|++.++ .++.+ +...+..+++|+.|++.++ .++.++. . ....+++|+.|++.+.+
T Consensus 161 ~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~--~-----~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 161 ELRLYNN-QLKRV-PEGAFDKLTELKTLKLDNN-QLKRVPE--G-----AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EEECCSS-CCSCC-CTTTTTTCTTCCEEECCSS-CCSCCCT--T-----TTTTCTTCCEEECCSSC
T ss_pred eeEecCC-cCcEe-ChhHhccCCCcCEEECCCC-cCCcCCH--H-----HhccccCCCEEEecCCC
Confidence 9999985 56666 5556788999999999997 5665542 1 12335899999998765
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.34 E-value=4e-11 Score=106.83 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=61.4
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT 207 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 207 (272)
+..+++|+.|++.+|++..+.+. .+..+++|++|++.++ .+..+ ++..+..+++|+.|+++++ .++.+..
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~--- 364 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDN----AFWGLTHLLKLNLSQN-FLGSI-DSRMFENLDKLEVLDLSYN-HIRALGD--- 364 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSS-CCCEE-CGGGGTTCTTCCEEECCSS-CCCEECT---
T ss_pred cccCCCCCEEECCCCcccccChh----HhcCcccCCEEECCCC-ccCCc-ChhHhcCcccCCEEECCCC-cccccCh---
Confidence 34455555555555544443222 2345566666666653 33444 3344555666666666665 3443321
Q ss_pred ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCC
Q 045653 208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDN 256 (272)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~ 256 (272)
.....+++|+.|+++++ +++.++.... ..+++|++|++++++-
T Consensus 365 ----~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 365 ----QSFLGLPNLKELALDTN-QLKSVPDGIF-DRLTSLQKIWLHTNPW 407 (455)
T ss_dssp ----TTTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSCB
T ss_pred ----hhccccccccEEECCCC-ccccCCHhHh-ccCCcccEEEccCCCc
Confidence 11233577788887774 5666655321 4677788888777643
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.33 E-value=4.2e-12 Score=108.06 Aligned_cols=63 Identities=11% Similarity=0.108 Sum_probs=41.8
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCC
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLP 77 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 77 (272)
.+++|++|+++++.++.... +...+.+++|++|+++++. +......... .+++|++|+++++.
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~----~l~~L~~L~Ls~N~ 136 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPI--PPAIAKLTQLHYLYITHTN-VSGAIPDFLS----QIKTLVTLDFSYNA 136 (313)
T ss_dssp GCTTCSEEEEEEETTEESCC--CGGGGGCTTCSEEEEEEEC-CEEECCGGGG----GCTTCCEEECCSSE
T ss_pred CCCCCCeeeCCCCCcccccC--ChhHhcCCCCCEEECcCCe-eCCcCCHHHh----CCCCCCEEeCCCCc
Confidence 56889999998655555331 3455678999999999884 3322221111 57888888888753
No 40
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.33 E-value=1.4e-11 Score=111.07 Aligned_cols=216 Identities=13% Similarity=0.061 Sum_probs=120.8
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK 87 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 87 (272)
.+++|++|+|+++ +++.+. +...+.+++|+.|++++|. +..... .. .+++|+.|+++++ .++.++....
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~--~~~~~~l~~L~~L~Ls~N~-l~~~~~--l~----~l~~L~~L~Ls~N-~l~~l~~~~~ 100 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQIS--AADLAPFTKLELLNLSSNV-LYETLD--LE----SLSTLRTLDLNNN-YVQELLVGPS 100 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCC--GGGGTTCTTCCEEECTTSC-CEEEEE--CT----TCTTCCEEECCSS-EEEEEEECTT
T ss_pred cCCCccEEEeeCC-cCCCCC--HHHHhCCCCCCEEEeeCCC-CCCCcc--cc----cCCCCCEEEecCC-cCCCCCCCCC
Confidence 4568999999985 444441 2345678999999999985 333222 11 5789999999886 5555554311
Q ss_pred cccccc---ccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCE
Q 045653 88 RHSISS---NTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTR 164 (272)
Q Consensus 88 ~~~~~~---~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~ 164 (272)
-..+.. .+.......++.|+ .+.+..+.-.. ..+..+..+++|+.|++++|.+..+.+..+ ...+++|++
T Consensus 101 L~~L~L~~N~l~~~~~~~l~~L~-~L~L~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~l~~L~~ 173 (487)
T 3oja_A 101 IETLHAANNNISRVSCSRGQGKK-NIYLANNKITM---LRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEH 173 (487)
T ss_dssp CCEEECCSSCCCCEEECCCSSCE-EEECCSSCCCS---GGGBCGGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCE
T ss_pred cCEEECcCCcCCCCCccccCCCC-EEECCCCCCCC---CCchhhcCCCCCCEEECCCCCCCCcChHHH---hhhCCcccE
Confidence 111100 00000011123344 44444433221 122334556777777777775555333211 114667777
Q ss_pred EEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCC
Q 045653 165 LVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWP 244 (272)
Q Consensus 165 L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 244 (272)
|+++++. ++.+ + ....+++|+.|+++++ .+..++.. ...+++|+.|+++++ .++.++... ..++
T Consensus 174 L~Ls~N~-l~~~-~--~~~~l~~L~~L~Ls~N-~l~~~~~~--------~~~l~~L~~L~Ls~N-~l~~lp~~l--~~l~ 237 (487)
T 3oja_A 174 LNLQYNF-IYDV-K--GQVVFAKLKTLDLSSN-KLAFMGPE--------FQSAAGVTWISLRNN-KLVLIEKAL--RFSQ 237 (487)
T ss_dssp EECTTSC-CCEE-E--CCCCCTTCCEEECCSS-CCCEECGG--------GGGGTTCSEEECTTS-CCCEECTTC--CCCT
T ss_pred EecCCCc-cccc-c--ccccCCCCCEEECCCC-CCCCCCHh--------HcCCCCccEEEecCC-cCcccchhh--ccCC
Confidence 7777643 4444 2 1235677777777765 35554421 223477888888775 666666655 5677
Q ss_pred CcCEEeecCCCCC
Q 045653 245 TLQSLEATGCDNL 257 (272)
Q Consensus 245 ~L~~L~i~~c~~l 257 (272)
+|+.|++++++-.
T Consensus 238 ~L~~L~l~~N~l~ 250 (487)
T 3oja_A 238 NLEHFDLRGNGFH 250 (487)
T ss_dssp TCCEEECTTCCBC
T ss_pred CCCEEEcCCCCCc
Confidence 8888888777543
No 41
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.33 E-value=1.7e-11 Score=104.39 Aligned_cols=211 Identities=16% Similarity=0.140 Sum_probs=127.5
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK 87 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 87 (272)
.+++|++|+++++. ++.. .+...+++|++|+++++. +...+ ..++|+.|+++++ ++..++....
T Consensus 56 ~l~~L~~L~Ls~n~-l~~~----~~~~~l~~L~~L~Ls~n~-l~~l~---------~~~~L~~L~l~~n-~l~~~~~~~~ 119 (317)
T 3o53_A 56 PFTKLELLNLSSNV-LYET----LDLESLSTLRTLDLNNNY-VQELL---------VGPSIETLHAANN-NISRVSCSRG 119 (317)
T ss_dssp TCTTCCEEECTTSC-CEEE----EEETTCTTCCEEECCSSE-EEEEE---------ECTTCCEEECCSS-CCSEEEECCC
T ss_pred CCCcCCEEECCCCc-CCcc----hhhhhcCCCCEEECcCCc-ccccc---------CCCCcCEEECCCC-ccCCcCcccc
Confidence 56889999998853 3333 225678999999999883 43322 1345555555443 2222221111
Q ss_pred ccccc-cc-----cc---cccccccceeecceeeeccCCCCccccccccc-CCCCCccEEEeccccceEeccCCCCCCCC
Q 045653 88 RHSIS-SN-----TK---DSQDQSMTAITCSYEVNLEDKLDTSTTLFNDK-VRLPKLEALELHEINVEKIWRSQVPAKFP 157 (272)
Q Consensus 88 ~~~~~-~~-----~~---~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~l~~i~~~~~~~~~~ 157 (272)
.. +. +. +. .......+.|+ .+++..+.-.. ..+..+ ..+++|+.|++++|.+..+. . ..
T Consensus 120 ~~-L~~L~l~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~---~~~~~~~~~l~~L~~L~L~~N~l~~~~-~-----~~ 188 (317)
T 3o53_A 120 QG-KKNIYLANNKITMLRDLDEGCRSRVQ-YLDLKLNEIDT---VNFAELAASSDTLEHLNLQYNFIYDVK-G-----QV 188 (317)
T ss_dssp SS-CEEEECCSSCCCSGGGBCTGGGSSEE-EEECTTSCCCE---EEGGGGGGGTTTCCEEECTTSCCCEEE-C-----CC
T ss_pred CC-CCEEECCCCCCCCccchhhhccCCCC-EEECCCCCCCc---ccHHHHhhccCcCCEEECCCCcCcccc-c-----cc
Confidence 00 00 00 00 00111244555 66666543222 112222 36799999999999887752 2 22
Q ss_pred CCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccc-ccccC
Q 045653 158 RFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKL-RFFYP 236 (272)
Q Consensus 158 ~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~~~~ 236 (272)
.+++|++|++.++ .++.+ +.. +..+++|+.|+++++ .++.++ ... ..+++|+.|++++++-. ...+.
T Consensus 189 ~l~~L~~L~Ls~N-~l~~l-~~~-~~~l~~L~~L~L~~N-~l~~l~--~~~------~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 189 VFAKLKTLDLSSN-KLAFM-GPE-FQSAAGVTWISLRNN-KLVLIE--KAL------RFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp CCTTCCEEECCSS-CCCEE-CGG-GGGGTTCSEEECTTS-CCCEEC--TTC------CCCTTCCEEECTTCCCBHHHHHH
T ss_pred ccccCCEEECCCC-cCCcc-hhh-hcccCcccEEECcCC-cccchh--hHh------hcCCCCCEEEccCCCccCcCHHH
Confidence 5899999999985 56666 543 788999999999997 577665 222 33599999999987543 23333
Q ss_pred CCccccCCCcCEEeecCCCCCcc
Q 045653 237 GMHTSEWPTLQSLEATGCDNLKI 259 (272)
Q Consensus 237 ~~~~~~~~~L~~L~i~~c~~l~~ 259 (272)
.. ..++.|+.+++.+++.++.
T Consensus 257 ~~--~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 257 FF--SKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp HH--HTCHHHHHHHHHHHHHHHS
T ss_pred HH--hccccceEEECCCchhccC
Confidence 33 5678888888886655543
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.33 E-value=5.2e-11 Score=101.94 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=43.6
Q ss_pred CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653 4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC 83 (272)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 83 (272)
+|...+++|++|++.++. ++.+. +.....+++|++|++.++. +........+ .+++|++|+++++ .++.++
T Consensus 48 ip~~~~~~l~~L~l~~n~-i~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~----~l~~L~~L~L~~n-~l~~l~ 118 (332)
T 2ft3_A 48 VPKEISPDTTLLDLQNND-ISELR--KDDFKGLQHLYALVLVNNK-ISKIHEKAFS----PLRKLQKLYISKN-HLVEIP 118 (332)
T ss_dssp CCSCCCTTCCEEECCSSC-CCEEC--TTTTTTCTTCCEEECCSSC-CCEECGGGST----TCTTCCEEECCSS-CCCSCC
T ss_pred cCCCCCCCCeEEECCCCc-CCccC--HhHhhCCCCCcEEECCCCc-cCccCHhHhh----CcCCCCEEECCCC-cCCccC
Confidence 344455678888887743 44441 1234567888888888873 4443222222 4788888888875 455555
Q ss_pred cC
Q 045653 84 RE 85 (272)
Q Consensus 84 ~~ 85 (272)
..
T Consensus 119 ~~ 120 (332)
T 2ft3_A 119 PN 120 (332)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 43
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.32 E-value=1.7e-11 Score=116.54 Aligned_cols=156 Identities=14% Similarity=0.071 Sum_probs=93.7
Q ss_pred CCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccc
Q 045653 9 FPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKR 88 (272)
Q Consensus 9 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 88 (272)
+++|++|.+.++.-...+ +.....+++|++|++++|. +........+ .+++|+.|+++++.--..+|.....
T Consensus 393 ~~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~----~l~~L~~L~L~~n~l~~~~p~~~~~ 464 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKI---PPTLSNCSELVSLHLSFNY-LSGTIPSSLG----SLSKLRDLKLWLNMLEGEIPQELMY 464 (768)
T ss_dssp TCCCCEEECCSSEEEEEC---CGGGGGCTTCCEEECCSSE-EESCCCGGGG----GCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cCCccEEECCCCcccccc---CHHHhcCCCCCEEECcCCc-ccCcccHHHh----cCCCCCEEECCCCcccCcCCHHHcC
Confidence 678999999997543333 3456678999999999984 3322222212 5899999999987544344432111
Q ss_pred cccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEe
Q 045653 89 HSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVS 168 (272)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~ 168 (272)
.+.|+ .+++..+.-.. .++..+..+++|+.|++.+|++.... |.++..+++|++|+++
T Consensus 465 --------------l~~L~-~L~L~~N~l~~---~~p~~l~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~L~ 522 (768)
T 3rgz_A 465 --------------VKTLE-TLILDFNDLTG---EIPSGLSNCTNLNWISLSNNRLTGEI----PKWIGRLENLAILKLS 522 (768)
T ss_dssp --------------CTTCC-EEECCSSCCCS---CCCGGGGGCTTCCEEECCSSCCCSCC----CGGGGGCTTCCEEECC
T ss_pred --------------CCCce-EEEecCCcccC---cCCHHHhcCCCCCEEEccCCccCCcC----ChHHhcCCCCCEEECC
Confidence 23344 55555544332 34445566677777777777554322 2244456777777777
Q ss_pred cCcCCccccchHHHhccccCcEEEeecC
Q 045653 169 NCHKLKYLFSASMIRSVEQLQHLDICLC 196 (272)
Q Consensus 169 ~c~~l~~l~~~~~~~~l~~L~~L~i~~c 196 (272)
+|.-...+ | ..+..+++|+.|++++|
T Consensus 523 ~N~l~~~~-p-~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 523 NNSFSGNI-P-AELGDCRSLIWLDLNTN 548 (768)
T ss_dssp SSCCEEEC-C-GGGGGCTTCCEEECCSS
T ss_pred CCcccCcC-C-HHHcCCCCCCEEECCCC
Confidence 65433233 3 34566777777777665
No 44
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.32 E-value=7.8e-11 Score=101.74 Aligned_cols=220 Identities=15% Similarity=0.121 Sum_probs=133.2
Q ss_pred CCCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcccc
Q 045653 3 KVPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSF 82 (272)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 82 (272)
.+|...++++++|+|++ .+++.+.. .....+++|++|+++++..+...+..... .+++|+++.+.++.+++.+
T Consensus 23 ~iP~~l~~~l~~L~Ls~-N~i~~i~~--~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~----~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 23 EIPSDLPRNAIELRFVL-TKLRVIQK--GAFSGFGDLEKIEISQNDVLEVIEADVFS----NLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp SCCTTCCTTCSEEEEES-CCCSEECT--TSSTTCTTCCEEEEECCTTCCEECTTSBC----SCTTCCEEEEEEETTCCEE
T ss_pred ccCcCcCCCCCEEEccC-CcCCCcCH--HHHcCCCCCCEEECcCCCCCCccChhHhh----cchhhhhhhcccCCccccc
Confidence 34555567899999988 45666611 23456889999999998655544433222 3555555555555555555
Q ss_pred ccCcccc--ccc-ccccccc--------ccccceeecceeeeccCCCCcccccc-cccCCC-CCccEEEeccccceEecc
Q 045653 83 CREVKRH--SIS-SNTKDSQ--------DQSMTAITCSYEVNLEDKLDTSTTLF-NDKVRL-PKLEALELHEINVEKIWR 149 (272)
Q Consensus 83 ~~~~~~~--~~~-~~~~~~~--------~~~~~~l~~~l~i~~~~~~~~~~~~~-~~~~~l-~~L~~L~L~~~~l~~i~~ 149 (272)
+++.... .+. +.+..-+ ......+. .+.+..+..+. .++ ..+..+ ..++.|++.+++++.+..
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~-~l~l~~~~~i~---~l~~~~f~~~~~~l~~L~L~~N~i~~i~~ 171 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV-LLDIQDNINIH---TIERNSFVGLSFESVILWLNKNGIQEIHN 171 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCE-EEEEESCTTCC---EECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred CchhhhhccccccccccccccccCCchhhcccchhh-hhhhccccccc---cccccchhhcchhhhhhccccccccCCCh
Confidence 4432221 111 0000000 00011111 33344433333 222 123333 367888888888877544
Q ss_pred CCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccc
Q 045653 150 SQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLP 229 (272)
Q Consensus 150 ~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 229 (272)
. .....+|+++.+.+++.++.+ +...+.++++|+.|+++++ +++.++. ..+.+|+.|.+.++.
T Consensus 172 ~-----~f~~~~L~~l~l~~~n~l~~i-~~~~f~~l~~L~~LdLs~N-~l~~lp~----------~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 172 S-----AFNGTQLDELNLSDNNNLEEL-PNDVFHGASGPVILDISRT-RIHSLPS----------YGLENLKKLRARSTY 234 (350)
T ss_dssp T-----SSTTEEEEEEECTTCTTCCCC-CTTTTTTEECCSEEECTTS-CCCCCCS----------SSCTTCCEEECTTCT
T ss_pred h-----hccccchhHHhhccCCcccCC-CHHHhccCcccchhhcCCC-CcCccCh----------hhhccchHhhhccCC
Confidence 3 224578899999888888887 7667788999999999986 5766652 124778888888888
Q ss_pred ccccccCCCccccCCCcCEEeecC
Q 045653 230 KLRFFYPGMHTSEWPTLQSLEATG 253 (272)
Q Consensus 230 ~l~~~~~~~~~~~~~~L~~L~i~~ 253 (272)
+++.+|. . ..+++|+.+++.+
T Consensus 235 ~l~~lP~-l--~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 235 NLKKLPT-L--EKLVALMEASLTY 255 (350)
T ss_dssp TCCCCCC-T--TTCCSCCEEECSC
T ss_pred CcCcCCC-c--hhCcChhhCcCCC
Confidence 8888875 2 5788999988865
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.31 E-value=4e-11 Score=110.80 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=45.1
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccC
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCRE 85 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 85 (272)
.+++++.+.+.++ .+..+ + +.....+++|+.|++.++. +...+..... .+++|+.|+++++. +..+++.
T Consensus 49 ~l~~l~~l~l~~~-~l~~l-p-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~----~l~~L~~L~L~~n~-l~~~~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKL-P-AALLDSFRQVELLNLNDLQ-IEEIDTYAFA----YAHTIQKLYMGFNA-IRYLPPH 117 (597)
T ss_dssp GGCCCSEEEESSC-EESEE-C-THHHHHCCCCSEEECTTSC-CCEECTTTTT----TCTTCCEEECCSSC-CCCCCTT
T ss_pred cCCCceEEEeeCC-CCCCc-C-HHHHccCCCCcEEECCCCC-CCCCChHHhc----CCCCCCEEECCCCc-CCCCCHH
Confidence 4567788888774 34444 1 1123568999999999984 5554433322 58999999999864 6665543
No 46
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.31 E-value=1.9e-13 Score=117.07 Aligned_cols=190 Identities=17% Similarity=0.125 Sum_probs=121.9
Q ss_pred CCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCc
Q 045653 7 DAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREV 86 (272)
Q Consensus 7 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 86 (272)
..+++|++|+++++. +... ..+.....+++|++|++.+|. +......... .+++|++|++++|..+++.
T Consensus 90 ~~~~~L~~L~L~~~~-l~~~-~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~----~~~~L~~L~L~~~~~l~~~---- 158 (336)
T 2ast_B 90 FSPFRVQHMDLSNSV-IEVS-TLHGILSQCSKLQNLSLEGLR-LSDPIVNTLA----KNSNLVRLNLSGCSGFSEF---- 158 (336)
T ss_dssp CCCBCCCEEECTTCE-ECHH-HHHHHHTTBCCCSEEECTTCB-CCHHHHHHHT----TCTTCSEEECTTCBSCCHH----
T ss_pred ccCCCCCEEEccCCC-cCHH-HHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHh----cCCCCCEEECCCCCCCCHH----
Confidence 357899999999975 4322 012334568999999999994 4322111111 5799999999998665431
Q ss_pred cccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccc-cceEeccCCCCCCCCCCC-CcCE
Q 045653 87 KRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEI-NVEKIWRSQVPAKFPRFQ-SLTR 164 (272)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~i~~~~~~~~~~~l~-~L~~ 164 (272)
.++..+..+++|+.|++.+| ++.... ++..+..++ +|++
T Consensus 159 ------------------------------------~l~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 159 ------------------------------------ALQTLLSSCSRLDELNLSWCFDFTEKH---VQVAVAHVSETITQ 199 (336)
T ss_dssp ------------------------------------HHHHHHHHCTTCCEEECCCCTTCCHHH---HHHHHHHSCTTCCE
T ss_pred ------------------------------------HHHHHHhcCCCCCEEcCCCCCCcChHH---HHHHHHhcccCCCE
Confidence 11112345788999999988 766410 111234578 9999
Q ss_pred EEEecCc-CCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccC
Q 045653 165 LVVSNCH-KLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEW 243 (272)
Q Consensus 165 L~i~~c~-~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 243 (272)
|++.+|. .+++-.....+..+++|++|++++|..++..... .+..+++|+.|++++|..+....... ...+
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-------~l~~l~~L~~L~l~~~~~~~~~~~~~-l~~~ 271 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-------EFFQLNYLQHLSLSRCYDIIPETLLE-LGEI 271 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-------GGGGCTTCCEEECTTCTTCCGGGGGG-GGGC
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-------HHhCCCCCCEeeCCCCCCCCHHHHHH-HhcC
Confidence 9999886 4543212345678899999999998655432211 12334889999998887554332211 1468
Q ss_pred CCcCEEeecCC
Q 045653 244 PTLQSLEATGC 254 (272)
Q Consensus 244 ~~L~~L~i~~c 254 (272)
++|++|++++|
T Consensus 272 ~~L~~L~l~~~ 282 (336)
T 2ast_B 272 PTLKTLQVFGI 282 (336)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEeccCc
Confidence 88888888887
No 47
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.29 E-value=9e-11 Score=101.32 Aligned_cols=211 Identities=11% Similarity=0.054 Sum_probs=124.4
Q ss_pred ceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccccc
Q 045653 13 ESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSIS 92 (272)
Q Consensus 13 ~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 92 (272)
+++..++ .+++.+ |. +-.+++++|+++++ ++..++..... .+++|++|+++++..++.++.+....
T Consensus 12 ~~v~C~~-~~Lt~i---P~--~l~~~l~~L~Ls~N-~i~~i~~~~f~----~l~~L~~L~Ls~N~i~~~i~~~~f~~--- 77 (350)
T 4ay9_X 12 RVFLCQE-SKVTEI---PS--DLPRNAIELRFVLT-KLRVIQKGAFS----GFGDLEKIEISQNDVLEVIEADVFSN--- 77 (350)
T ss_dssp TEEEEES-TTCCSC---CT--TCCTTCSEEEEESC-CCSEECTTSST----TCTTCCEEEEECCTTCCEECTTSBCS---
T ss_pred CEEEecC-CCCCcc---Cc--CcCCCCCEEEccCC-cCCCcCHHHHc----CCCCCCEEECcCCCCCCccChhHhhc---
Confidence 4444443 356655 22 22478999999997 56666654433 58999999999987666665533221
Q ss_pred cccccccccccceeecceeeeccCCCCccccc-ccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCc
Q 045653 93 SNTKDSQDQSMTAITCSYEVNLEDKLDTSTTL-FNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCH 171 (272)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~ 171 (272)
.+.+. .+.+..+..+. .+ +..+..+++|+.|++.++++..+.+. .+....++..+.+.++.
T Consensus 78 ----------L~~l~-~~l~~~~N~l~---~l~~~~f~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~l~~l~l~~~~ 139 (350)
T 4ay9_X 78 ----------LPKLH-EIRIEKANNLL---YINPEAFQNLPNLQYLLISNTGIKHLPDV----HKIHSLQKVLLDIQDNI 139 (350)
T ss_dssp ----------CTTCC-EEEEEEETTCC---EECTTSBCCCTTCCEEEEEEECCSSCCCC----TTCCBSSCEEEEEESCT
T ss_pred ----------chhhh-hhhcccCCccc---ccCchhhhhccccccccccccccccCCch----hhcccchhhhhhhcccc
Confidence 12222 23333444443 33 34567788999999988866653322 22244566667777666
Q ss_pred CCccccchHHHhccc-cCcEEEeecCCCcceeeccCCc---------------cc--cCCccCCCccCeeeccccccccc
Q 045653 172 KLKYLFSASMIRSVE-QLQHLDICLCKGLLGIISEDTA---------------IQ--VTPCFVFPRVSTLRLIDLPKLRF 233 (272)
Q Consensus 172 ~l~~l~~~~~~~~l~-~L~~L~i~~c~~l~~~~~~~~~---------------~~--~~~~~~l~~L~~L~l~~c~~l~~ 233 (272)
.+..+ +...+..+. .++.|+++++ +++.++..... .. ......+++|+.|++++. +++.
T Consensus 140 ~i~~l-~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~ 216 (350)
T 4ay9_X 140 NIHTI-ERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHS 216 (350)
T ss_dssp TCCEE-CTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCC
T ss_pred ccccc-cccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCc
Confidence 66665 433333433 4566666653 35554421110 00 011234577888888775 6777
Q ss_pred ccCCCccccCCCcCEEeecCCCCCccccc
Q 045653 234 FYPGMHTSEWPTLQSLEATGCDNLKIFGS 262 (272)
Q Consensus 234 ~~~~~~~~~~~~L~~L~i~~c~~l~~l~~ 262 (272)
++.. .+..|++|.+.++.+++.+|.
T Consensus 217 lp~~----~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 217 LPSY----GLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp CCSS----SCTTCCEEECTTCTTCCCCCC
T ss_pred cChh----hhccchHhhhccCCCcCcCCC
Confidence 7653 367788888888888887774
No 48
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.28 E-value=9.1e-11 Score=98.72 Aligned_cols=185 Identities=18% Similarity=0.184 Sum_probs=126.9
Q ss_pred ccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccccccccccccccccceeecceeeec
Q 045653 35 SFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNL 114 (272)
Q Consensus 35 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~ 114 (272)
.+++++++++.++ ++...+.. ..++++.|+++++ .+..++...... ++.|+ .+.+..
T Consensus 8 ~l~~l~~l~~~~~-~l~~ip~~-------~~~~l~~L~L~~N-~l~~~~~~~~~~-------------l~~L~-~L~L~~ 64 (290)
T 1p9a_G 8 KVASHLEVNCDKR-NLTALPPD-------LPKDTTILHLSEN-LLYTFSLATLMP-------------YTRLT-QLNLDR 64 (290)
T ss_dssp CSTTCCEEECTTS-CCSSCCSC-------CCTTCCEEECTTS-CCSEEEGGGGTT-------------CTTCC-EEECTT
T ss_pred ccCCccEEECCCC-CCCcCCCC-------CCCCCCEEEcCCC-cCCccCHHHhhc-------------CCCCC-EEECCC
Confidence 4678888888875 45544432 2478999999986 355544322111 34444 555555
Q ss_pred cCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEee
Q 045653 115 EDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDIC 194 (272)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~ 194 (272)
+.- . .++. ...+++|+.|+++++++..+ |..+..+++|++|++.+ +.++.+ +...+..+++|+.|+++
T Consensus 65 n~l-~---~~~~-~~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~L~~L~l~~-N~l~~l-~~~~~~~l~~L~~L~L~ 132 (290)
T 1p9a_G 65 AEL-T---KLQV-DGTLPVLGTLDLSHNQLQSL-----PLLGQTLPALTVLDVSF-NRLTSL-PLGALRGLGELQELYLK 132 (290)
T ss_dssp SCC-C---EEEC-CSCCTTCCEEECCSSCCSSC-----CCCTTTCTTCCEEECCS-SCCCCC-CSSTTTTCTTCCEEECT
T ss_pred Ccc-C---cccC-CCCCCcCCEEECCCCcCCcC-----chhhccCCCCCEEECCC-CcCccc-CHHHHcCCCCCCEEECC
Confidence 432 1 2222 26789999999999977652 33456789999999998 466666 55667899999999999
Q ss_pred cCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccccccc
Q 045653 195 LCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSELS 265 (272)
Q Consensus 195 ~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~ 265 (272)
++ .++.++. +. ...+++|+.|+++++ +++.++.... ..+++|++|+++++ +++.+|.+..
T Consensus 133 ~N-~l~~~~~--~~-----~~~l~~L~~L~L~~N-~l~~l~~~~~-~~l~~L~~L~L~~N-~l~~ip~~~~ 192 (290)
T 1p9a_G 133 GN-ELKTLPP--GL-----LTPTPKLEKLSLANN-NLTELPAGLL-NGLENLDTLLLQEN-SLYTIPKGFF 192 (290)
T ss_dssp TS-CCCCCCT--TT-----TTTCTTCCEEECTTS-CCSCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CC-CCCccCh--hh-----cccccCCCEEECCCC-cCCccCHHHh-cCcCCCCEEECCCC-cCCccChhhc
Confidence 97 4665542 11 233589999999986 7888877542 46899999999987 5777776543
No 49
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.28 E-value=1.6e-10 Score=108.22 Aligned_cols=121 Identities=16% Similarity=0.133 Sum_probs=61.7
Q ss_pred cccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccc-------hHHHhccccCcEEEeecCCC
Q 045653 126 NDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFS-------ASMIRSVEQLQHLDICLCKG 198 (272)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~-------~~~~~~l~~L~~L~i~~c~~ 198 (272)
..+..+++|+.|++++|++..+.+. .+..+++|++|++.++ .++.+.. ...+.++++|+.|+++++ .
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~i~~~----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~ 547 (680)
T 1ziw_A 474 SPFQPLRNLTILDLSNNNIANINDD----MLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-G 547 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-C
T ss_pred cccccCCCCCEEECCCCCCCcCChh----hhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-C
Confidence 3344555555555555544432222 2334555666655553 2332200 011345555666666554 3
Q ss_pred cceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCccccc
Q 045653 199 LLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGS 262 (272)
Q Consensus 199 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~ 262 (272)
++.++. .....+++|+.|++++. +++.++.... ..+++|+.|+++++ +++.+++
T Consensus 548 l~~i~~-------~~~~~l~~L~~L~Ls~N-~l~~l~~~~~-~~l~~L~~L~L~~N-~l~~~~~ 601 (680)
T 1ziw_A 548 FDEIPV-------EVFKDLFELKIIDLGLN-NLNTLPASVF-NNQVSLKSLNLQKN-LITSVEK 601 (680)
T ss_dssp CCCCCT-------TTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECTTS-CCCBCCH
T ss_pred CCCCCH-------HHcccccCcceeECCCC-CCCcCCHhHh-CCCCCCCEEECCCC-cCCccCh
Confidence 433321 11233577777777664 6666665432 46677888888776 5665544
No 50
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.28 E-value=2e-11 Score=113.61 Aligned_cols=222 Identities=15% Similarity=0.119 Sum_probs=122.5
Q ss_pred CCCCcceeeecccccccc------------------ccccccccc--ccCCccEEEEccCccceeecCCCccccceeccc
Q 045653 8 AFPLLESLTLHNLINLER------------------ICIDRLKVD--SFNELKTIKVESCDEIFAIGGEADVVTEGIFAQ 67 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~------------------~~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~ 67 (272)
.+++|++|+++++. ++. + +...+ .+++|++|++++|......+. ..+ .+++
T Consensus 204 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~i---p~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~----~l~~ 274 (636)
T 4eco_A 204 RLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYK---TEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLK----ALPE 274 (636)
T ss_dssp GCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT---TSCCCGGGCTTCCEEEEECCTTCSSCCT-TTT----TCSS
T ss_pred cccCCCEEECcCCc-cccccccccccccccchhcccC---chhhhhcccCCCCEEEecCCcCCccChH-HHh----cCCC
Confidence 46789999999865 554 3 45556 789999999999864443332 111 5889
Q ss_pred cCeEEecCCCCccc--cccCccccccccccccccccccceeecceeeeccCCCCccccccc--ccCCCCCccEEEecccc
Q 045653 68 ISCLSLGNLPQLTS--FCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFN--DKVRLPKLEALELHEIN 143 (272)
Q Consensus 68 L~~L~l~~c~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~--~~~~l~~L~~L~L~~~~ 143 (272)
|+.|+++++..++. +|....... .....+.|+ .+++..+.-. .++. .+..+++|+.|++.+|+
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~--------~~~~l~~L~-~L~L~~n~l~----~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALA--------DAPVGEKIQ-IIYIGYNNLK----TFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHH--------HSGGGGTCC-EEECCSSCCS----SCCCHHHHTTCTTCCEEECCSCC
T ss_pred CCEEECcCCCCCccccchHHHHhhh--------ccccCCCCC-EEECCCCcCC----ccCchhhhccCCCCCEEeCcCCc
Confidence 99999998764553 443221100 000012333 4445444321 3444 45666677777777765
Q ss_pred ce-EeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhcccc-CcEEEeecCCCcceeeccCCcccc----------
Q 045653 144 VE-KIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQ-LQHLDICLCKGLLGIISEDTAIQV---------- 211 (272)
Q Consensus 144 l~-~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~-L~~L~i~~c~~l~~~~~~~~~~~~---------- 211 (272)
+. .+ | .+..+++|++|++.++. +..+ |. .+..+++ |+.|+++++. ++.++..-.....
T Consensus 342 l~g~i-----p-~~~~l~~L~~L~L~~N~-l~~l-p~-~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 342 LEGKL-----P-AFGSEIKLASLNLAYNQ-ITEI-PA-NFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp CEEEC-----C-CCEEEEEESEEECCSSE-EEEC-CT-TSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCS
T ss_pred Cccch-----h-hhCCCCCCCEEECCCCc-cccc-cH-hhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcC
Confidence 55 31 1 23345666666666532 3333 32 3455555 6666666543 3333211000000
Q ss_pred --------CCcc-------CCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCccccccc
Q 045653 212 --------TPCF-------VFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSEL 264 (272)
Q Consensus 212 --------~~~~-------~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~ 264 (272)
..+. .+++|+.|+++++ .++.++... ...+++|++|+++++ +++.+|...
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~l~~L~~L~Ls~N-~l~~i~~~~ 476 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKEL-FSTGSPLSSINLMGN-MLTEIPKNS 476 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHH-HHTTCCCSEEECCSS-CCSBCCSSS
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHH-HccCCCCCEEECCCC-CCCCcCHHH
Confidence 0011 3457888888775 566555532 135788888888877 455676644
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.27 E-value=1.2e-10 Score=108.93 Aligned_cols=120 Identities=16% Similarity=0.184 Sum_probs=86.0
Q ss_pred ccCCCCCccEEEeccccceEeccCCCCC----CCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCccee
Q 045653 127 DKVRLPKLEALELHEINVEKIWRSQVPA----KFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGI 202 (272)
Q Consensus 127 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~----~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 202 (272)
.+..+++|+.|++++|++..++....|. .+..+++|++|++.++ .+..+ +...+.++++|+.|+++++ +++.+
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i-~~~~~~~l~~L~~L~Ls~N-~l~~l 575 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEI-PVEVFKDLFELKIIDLGLN-NLNTL 575 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCC-CHHHcccccCcceeECCCC-CCCcC
Confidence 4677899999999999777655443322 3567899999999884 56666 6566788999999999875 56655
Q ss_pred eccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCC
Q 045653 203 ISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNL 257 (272)
Q Consensus 203 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l 257 (272)
+. .. ...+++|+.|+++++ +++.++.......+++|+.+++.++|-.
T Consensus 576 ~~--~~-----~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 576 PA--SV-----FNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp CT--TT-----TTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CH--hH-----hCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcc
Confidence 52 11 223589999999886 6776665432226789999999886643
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.27 E-value=1.9e-10 Score=98.42 Aligned_cols=213 Identities=10% Similarity=0.099 Sum_probs=110.2
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK 87 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 87 (272)
.+++|++|+++++. ++.+ . +...+.+++|++|+++++. +...+.. .+++|++|+++++ .+..++....
T Consensus 76 ~l~~L~~L~L~~n~-l~~~-~-~~~~~~l~~L~~L~L~~n~-l~~l~~~-------~~~~L~~L~l~~n-~i~~~~~~~~ 143 (332)
T 2ft3_A 76 GLQHLYALVLVNNK-ISKI-H-EKAFSPLRKLQKLYISKNH-LVEIPPN-------LPSSLVELRIHDN-RIRKVPKGVF 143 (332)
T ss_dssp TCTTCCEEECCSSC-CCEE-C-GGGSTTCTTCCEEECCSSC-CCSCCSS-------CCTTCCEEECCSS-CCCCCCSGGG
T ss_pred CCCCCcEEECCCCc-cCcc-C-HhHhhCcCCCCEEECCCCc-CCccCcc-------ccccCCEEECCCC-ccCccCHhHh
Confidence 56789999998863 4444 1 2345568899999998873 3333221 1356666666653 2333332111
Q ss_pred cc--ccc-ccc-----c-----cccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCC
Q 045653 88 RH--SIS-SNT-----K-----DSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPA 154 (272)
Q Consensus 88 ~~--~~~-~~~-----~-----~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~ 154 (272)
.. .+. +.+ . ....... .++ .+++..+.-. .++.. ..++|+.|++.++.+..+.+.
T Consensus 144 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~-~L~l~~n~l~----~l~~~--~~~~L~~L~l~~n~i~~~~~~---- 211 (332)
T 2ft3_A 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN-YLRISEAKLT----GIPKD--LPETLNELHLDHNKIQAIELE---- 211 (332)
T ss_dssp SSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS-CCBCCSSBCS----SCCSS--SCSSCSCCBCCSSCCCCCCTT----
T ss_pred CCCccCCEEECCCCccccCCCCcccccCC-ccC-EEECcCCCCC----ccCcc--ccCCCCEEECCCCcCCccCHH----
Confidence 10 000 000 0 0000000 222 2222222111 12221 125677777777755543222
Q ss_pred CCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccc
Q 045653 155 KFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFF 234 (272)
Q Consensus 155 ~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 234 (272)
.+..+++|++|++.++ .+..+ +...+..+++|+.|++.++ .+..++ .. ...+++|+.|+++++ .++.+
T Consensus 212 ~l~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~lp--~~------l~~l~~L~~L~l~~N-~l~~~ 279 (332)
T 2ft3_A 212 DLLRYSKLYRLGLGHN-QIRMI-ENGSLSFLPTLRELHLDNN-KLSRVP--AG------LPDLKLLQVVYLHTN-NITKV 279 (332)
T ss_dssp SSTTCTTCSCCBCCSS-CCCCC-CTTGGGGCTTCCEEECCSS-CCCBCC--TT------GGGCTTCCEEECCSS-CCCBC
T ss_pred HhcCCCCCCEEECCCC-cCCcC-ChhHhhCCCCCCEEECCCC-cCeecC--hh------hhcCccCCEEECCCC-CCCcc
Confidence 3456777787777774 44555 4345667778888888776 455444 22 223477888888775 56666
Q ss_pred cCCCccc-----cCCCcCEEeecCCCC
Q 045653 235 YPGMHTS-----EWPTLQSLEATGCDN 256 (272)
Q Consensus 235 ~~~~~~~-----~~~~L~~L~i~~c~~ 256 (272)
+...... ..+.|+.|++.+++-
T Consensus 280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 280 GVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred ChhHccccccccccccccceEeecCcc
Confidence 5533221 145677777777763
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.26 E-value=5.3e-11 Score=108.95 Aligned_cols=115 Identities=15% Similarity=0.200 Sum_probs=74.7
Q ss_pred ccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccC
Q 045653 127 DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISED 206 (272)
Q Consensus 127 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~ 206 (272)
.+..+++|+.|++.+|.+..+.+. .+..+++|++|++.+|.-....+| ..+..+++|+.|++++| .+..+.+ .
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~~L~~L~l~~n-~l~~~~~-~ 488 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNG----IFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQC-QLEQLSP-T 488 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTT----TTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTS-CCCEECT-T
T ss_pred hhhcCCCCCEEeCcCCcccccchh----hhhcCCcCcEEECcCCcCccccch-hhhhcccCCCEEECCCC-ccccCCh-h
Confidence 346677888888888866654332 455678888888887653312213 34667788888888877 3555432 1
Q ss_pred CccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCC
Q 045653 207 TAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDN 256 (272)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~ 256 (272)
....+++|+.|+++++ .++.++.... ..+++|++|++++++-
T Consensus 489 ------~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 489 ------AFNSLSSLQVLNMASN-QLKSVPDGIF-DRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ------TTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSCB
T ss_pred ------hhhcccCCCEEeCCCC-cCCCCCHHHh-hcccCCcEEEecCCcc
Confidence 1233588889998886 6666655322 5788888898888653
No 54
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.26 E-value=5.6e-11 Score=94.17 Aligned_cols=109 Identities=19% Similarity=0.257 Sum_probs=80.2
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT 207 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 207 (272)
+..+++|+.|++.+|++....+. .+..+++|++|++.++. +... ....+..+++|++|++++|..+..++
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~-i~~~-~~~~l~~l~~L~~L~L~~n~~i~~~~---- 153 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIP----NLSGLTSLTLLDISHSA-HDDS-ILTKINTLPKVNSIDLSYNGAITDIM---- 153 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSC----CCTTCTTCCEEECCSSB-CBGG-GHHHHTTCSSCCEEECCSCTBCCCCG----
T ss_pred hhcCCCCCEEEeECCccCcccCh----hhcCCCCCCEEEecCCc-cCcH-hHHHHhhCCCCCEEEccCCCCccccH----
Confidence 35689999999999976642222 45678999999999854 4543 23567889999999999986565553
Q ss_pred ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653 208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 255 (272)
....+++|+.|+++++ .+++++ .. ..+++|++|++++.+
T Consensus 154 -----~l~~l~~L~~L~l~~n-~i~~~~-~l--~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 154 -----PLKTLPELKSLNIQFD-GVHDYR-GI--EDFPKLNQLYAFSQT 192 (197)
T ss_dssp -----GGGGCSSCCEEECTTB-CCCCCT-TG--GGCSSCCEEEECBC-
T ss_pred -----hhcCCCCCCEEECCCC-CCcChH-Hh--ccCCCCCEEEeeCcc
Confidence 1234599999999987 576665 33 678999999998764
No 55
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=3.3e-10 Score=108.56 Aligned_cols=184 Identities=10% Similarity=0.120 Sum_probs=90.5
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCcccee--ecCCCcccc-ce-eccccCeEEecCCCCccccc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFA--IGGEADVVT-EG-IFAQISCLSLGNLPQLTSFC 83 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~-~~-~l~~L~~L~l~~c~~l~~~~ 83 (272)
.+++|++|.|+++.....+ +...+.+++|+.|+++++..+.. .+....... .. .+++|+.|+++++ .+..+|
T Consensus 489 ~L~~L~~L~Ls~N~l~~~i---P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip 564 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQL---PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFP 564 (876)
T ss_dssp GCTTCCEEEEESCTTCCSC---CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCC
T ss_pred cCCCCCEEECcCCCCCccC---hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccC
Confidence 5789999999987655555 45566789999999999863432 111000000 00 2346666666654 233443
Q ss_pred c--Cccc-cccc-ccc-----c-cccccccceeecceeeeccCCCCcccccccccCCCCC-ccEEEeccccceEeccC--
Q 045653 84 R--EVKR-HSIS-SNT-----K-DSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPK-LEALELHEINVEKIWRS-- 150 (272)
Q Consensus 84 ~--~~~~-~~~~-~~~-----~-~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~~~l~~i~~~-- 150 (272)
. .... ..+. +.+ . ......++.|+ .+++..+.-. .++..+..+++ |+.|++.+|++..+...
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~-~L~Ls~N~l~----~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~ 639 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLT-DLKLDYNQIE----EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEES-EEECCSSCCS----CCCTTSCEECTTCCEEECCSSCCCSCCSCCC
T ss_pred ChhhhhcCCCCCEEECCCCCcccchhhcCCCcce-EEECcCCccc----cchHHHhhccccCCEEECcCCCCCcCchhhh
Confidence 3 1110 0111 000 0 00111123333 4444433211 33444455555 66666665533321100
Q ss_pred -------------------CCC---CCCC--CCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceee
Q 045653 151 -------------------QVP---AKFP--RFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGII 203 (272)
Q Consensus 151 -------------------~~~---~~~~--~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~ 203 (272)
.+| ..+. .+++|++|++.++ .+..+ |......+++|+.|+++++ .+..++
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~~L~Ls~N-~L~~ip 713 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKF-PTELFATGSPISTIILSNN-LMTSIP 713 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSC-CHHHHHTTCCCSEEECCSC-CCSCCC
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCcc-CHHHHccCCCCCEEECCCC-cCCccC
Confidence 001 0011 2347778887774 34455 6556667888888888876 455444
No 56
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.25 E-value=5.3e-11 Score=110.84 Aligned_cols=120 Identities=16% Similarity=0.181 Sum_probs=71.7
Q ss_pred CCCCccEEEeccccceEeccCCCCC---CCCCCCCcCEEEEecCcCCccccchHHH-hccccCcEEEeecCCCcceeecc
Q 045653 130 RLPKLEALELHEINVEKIWRSQVPA---KFPRFQSLTRLVVSNCHKLKYLFSASMI-RSVEQLQHLDICLCKGLLGIISE 205 (272)
Q Consensus 130 ~l~~L~~L~L~~~~l~~i~~~~~~~---~~~~l~~L~~L~i~~c~~l~~l~~~~~~-~~l~~L~~L~i~~c~~l~~~~~~ 205 (272)
.+++|+.|++.+|++..+....... ....+++|++|++.++ .++.+ |.... ..+++|+.|+++++ .++.++
T Consensus 455 ~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~~~~~~l~~L~~L~Ls~N-~l~~ip-- 529 (636)
T 4eco_A 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKL-SDDFRATTLPYLVGIDLSYN-SFSKFP-- 529 (636)
T ss_dssp TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBC-CGGGSTTTCTTCCEEECCSS-CCSSCC--
T ss_pred cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-cCCcc-ChhhhhccCCCcCEEECCCC-CCCCcC--
Confidence 4677777777777555432221100 0112337888888774 44555 43222 37788888888876 354443
Q ss_pred CCccccCCccCCCccCeeecccc------cccccccCCCccccCCCcCEEeecCCCCCcccccc
Q 045653 206 DTAIQVTPCFVFPRVSTLRLIDL------PKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSE 263 (272)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~c------~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~ 263 (272)
.. +..+++|+.|+++++ .-...++... ..+++|++|+++++. ++.+|..
T Consensus 530 ~~------~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~-l~~ip~~ 584 (636)
T 4eco_A 530 TQ------PLNSSTLKGFGIRNQRDAQGNRTLREWPEGI--TLCPSLTQLQIGSND-IRKVNEK 584 (636)
T ss_dssp CG------GGGCSSCCEEECCSCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSSC-CCBCCSC
T ss_pred hh------hhcCCCCCEEECCCCcccccCcccccChHHH--hcCCCCCEEECCCCc-CCccCHh
Confidence 22 233588888888543 2344555555 678889999998885 4777765
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.23 E-value=2.5e-10 Score=95.10 Aligned_cols=189 Identities=15% Similarity=0.182 Sum_probs=125.4
Q ss_pred cCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccccccccccccccccceeecceeeecc
Q 045653 36 FNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLE 115 (272)
Q Consensus 36 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~ 115 (272)
.++|++|+++++ ++......... .+++|+.|+++++ .++.++...... .++|+ .+++..+
T Consensus 27 ~~~l~~L~ls~n-~l~~~~~~~~~----~l~~L~~L~l~~n-~l~~~~~~~~~~-------------l~~L~-~L~L~~n 86 (276)
T 2z62_A 27 PFSTKNLDLSFN-PLRHLGSYSFF----SFPELQVLDLSRC-EIQTIEDGAYQS-------------LSHLS-TLILTGN 86 (276)
T ss_dssp CTTCCEEECTTC-CCCEECTTTTT----TCTTCSEEECTTC-CCCEECTTTTTT-------------CTTCC-EEECTTC
T ss_pred CCCccEEECCCC-cccccCHhHhc----cccCCcEEECCCC-cCCccCHHHccC-------------CcCCC-EEECCCC
Confidence 367999999998 45555442222 5899999999987 565555432221 34455 6666554
Q ss_pred CCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeec
Q 045653 116 DKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICL 195 (272)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 195 (272)
.-.. ..+..+..+++|+.|++.++++..+.+. .+..+++|++|++.++. +..+..+..+..+++|++|++++
T Consensus 87 ~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 87 PIQS---LALGAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp CCCE---ECTTTTTTCTTCCEEECTTSCCCCSTTC----CCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCS
T ss_pred ccCc---cChhhhcCCccccEEECCCCCccccCch----hcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCC
Confidence 3221 1234567889999999999977764332 35578999999999854 44431134678899999999999
Q ss_pred CCCcceeeccCCccccCCccCCCccC----eeecccccccccccCCCccccCCCcCEEeecCCCCCccccccc
Q 045653 196 CKGLLGIISEDTAIQVTPCFVFPRVS----TLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSEL 264 (272)
Q Consensus 196 c~~l~~~~~~~~~~~~~~~~~l~~L~----~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~ 264 (272)
+ .++.++... . ..+++|+ .|+++++ .++.++... ....+|++|+++++. ++.+|...
T Consensus 159 N-~l~~~~~~~-~------~~l~~L~~l~l~L~ls~n-~l~~~~~~~--~~~~~L~~L~L~~n~-l~~~~~~~ 219 (276)
T 2z62_A 159 N-KIQSIYCTD-L------RVLHQMPLLNLSLDLSLN-PMNFIQPGA--FKEIRLKELALDTNQ-LKSVPDGI 219 (276)
T ss_dssp S-CCCEECGGG-G------HHHHTCTTCCEEEECCSS-CCCEECTTS--SCSCCEEEEECCSSC-CSCCCTTT
T ss_pred C-CCCcCCHHH-h------hhhhhccccceeeecCCC-cccccCccc--cCCCcccEEECCCCc-eeecCHhH
Confidence 7 466654211 1 1124444 7888875 677777655 345589999999885 77776654
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.23 E-value=1.1e-11 Score=105.42 Aligned_cols=120 Identities=19% Similarity=0.175 Sum_probs=64.8
Q ss_pred cccCCCCCccEEEeccccceEe--ccCCCCCCCCCCCCcCEEEEecCcCCccc--cchHHHhccccCcEEEeecCCCcce
Q 045653 126 NDKVRLPKLEALELHEINVEKI--WRSQVPAKFPRFQSLTRLVVSNCHKLKYL--FSASMIRSVEQLQHLDICLCKGLLG 201 (272)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~l~~i--~~~~~~~~~~~l~~L~~L~i~~c~~l~~l--~~~~~~~~l~~L~~L~i~~c~~l~~ 201 (272)
..+..+++|+.|++++|++... .+... .+..+++|++|++.++ .+..+ .+.....++++|+.|+++++. +..
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 242 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLISAL--CPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRD 242 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHHHS--CTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCS
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHHHH--HhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCc
Confidence 3456677777887777753221 00000 1245677777777774 34422 022334466777777777753 433
Q ss_pred eeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccc
Q 045653 202 IISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFG 261 (272)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~ 261 (272)
...... ...+++|+.|+++++ +++.++... . ++|++|+++++ +++.+|
T Consensus 243 ~~~~~~------~~~l~~L~~L~Ls~N-~l~~ip~~~--~--~~L~~L~Ls~N-~l~~~p 290 (312)
T 1wwl_A 243 AAGAPS------CDWPSQLNSLNLSFT-GLKQVPKGL--P--AKLSVLDLSYN-RLDRNP 290 (312)
T ss_dssp SCCCSC------CCCCTTCCEEECTTS-CCSSCCSSC--C--SEEEEEECCSS-CCCSCC
T ss_pred ccchhh------hhhcCCCCEEECCCC-ccChhhhhc--c--CCceEEECCCC-CCCCCh
Confidence 321111 122367777777765 555555543 1 66777777765 455554
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.23 E-value=8e-10 Score=94.37 Aligned_cols=214 Identities=11% Similarity=0.114 Sum_probs=128.9
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK 87 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 87 (272)
.+++|++|+++++ .++.+. +.....+++|++|+++++. +...+.. .+++|+.|+++++ .+..++....
T Consensus 74 ~l~~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~Ls~n~-l~~l~~~-------~~~~L~~L~l~~n-~l~~~~~~~~ 141 (330)
T 1xku_A 74 NLKNLHTLILINN-KISKIS--PGAFAPLVKLERLYLSKNQ-LKELPEK-------MPKTLQELRVHEN-EITKVRKSVF 141 (330)
T ss_dssp TCTTCCEEECCSS-CCCCBC--TTTTTTCTTCCEEECCSSC-CSBCCSS-------CCTTCCEEECCSS-CCCBBCHHHH
T ss_pred cCCCCCEEECCCC-cCCeeC--HHHhcCCCCCCEEECCCCc-CCccChh-------hcccccEEECCCC-cccccCHhHh
Confidence 5688999999885 344431 2345568899999999873 3333221 1356666666553 2222221100
Q ss_pred c--cccc-cc-----c-----ccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCC
Q 045653 88 R--HSIS-SN-----T-----KDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPA 154 (272)
Q Consensus 88 ~--~~~~-~~-----~-----~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~ 154 (272)
. ..+. +. + ........+.|+ .+.+..+.-. .++.. ..++|+.|++.+|++..+.+.
T Consensus 142 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~-~L~l~~n~l~----~l~~~--~~~~L~~L~l~~n~l~~~~~~---- 210 (330)
T 1xku_A 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS-YIRIADTNIT----TIPQG--LPPSLTELHLDGNKITKVDAA---- 210 (330)
T ss_dssp TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC-EEECCSSCCC----SCCSS--CCTTCSEEECTTSCCCEECTG----
T ss_pred cCCccccEEECCCCcCCccCcChhhccCCCCcC-EEECCCCccc----cCCcc--ccccCCEEECCCCcCCccCHH----
Confidence 0 0000 00 0 000112234455 5555554322 23332 238999999999988775433
Q ss_pred CCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccc
Q 045653 155 KFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFF 234 (272)
Q Consensus 155 ~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 234 (272)
.+..+++|++|++.++ .+..+ +...+..+++|++|+++++ .+..++ .. +..+++|+.|+++++ .++.+
T Consensus 211 ~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~lp--~~------l~~l~~L~~L~l~~N-~i~~~ 278 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFN-SISAV-DNGSLANTPHLRELHLNNN-KLVKVP--GG------LADHKYIQVVYLHNN-NISAI 278 (330)
T ss_dssp GGTTCTTCCEEECCSS-CCCEE-CTTTGGGSTTCCEEECCSS-CCSSCC--TT------TTTCSSCCEEECCSS-CCCCC
T ss_pred HhcCCCCCCEEECCCC-cCcee-ChhhccCCCCCCEEECCCC-cCccCC--hh------hccCCCcCEEECCCC-cCCcc
Confidence 3557899999999985 45665 4456788999999999997 466554 22 233589999999886 67777
Q ss_pred cCCCcc-----ccCCCcCEEeecCCCC
Q 045653 235 YPGMHT-----SEWPTLQSLEATGCDN 256 (272)
Q Consensus 235 ~~~~~~-----~~~~~L~~L~i~~c~~ 256 (272)
+...+. ...+.++.+++.+.+-
T Consensus 279 ~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 279 GSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred ChhhcCCcccccccccccceEeecCcc
Confidence 654321 1247788999988764
No 60
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.22 E-value=2.8e-10 Score=93.53 Aligned_cols=177 Identities=16% Similarity=0.176 Sum_probs=94.3
Q ss_pred CCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcccc
Q 045653 10 PLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRH 89 (272)
Q Consensus 10 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 89 (272)
++.+++++++ .+++.+ +.. ..++|+.|++.++. +......... .+++|+.|+++++ .++.++.
T Consensus 14 ~~~~~l~~~~-~~l~~~---p~~--~~~~l~~L~L~~n~-l~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~----- 76 (251)
T 3m19_A 14 EGKKEVDCQG-KSLDSV---PSG--IPADTEKLDLQSTG-LATLSDATFR----GLTKLTWLNLDYN-QLQTLSA----- 76 (251)
T ss_dssp GGGTEEECTT-CCCSSC---CSC--CCTTCCEEECTTSC-CCCCCTTTTT----TCTTCCEEECTTS-CCCCCCT-----
T ss_pred CCCeEEecCC-CCcccc---CCC--CCCCCCEEEccCCC-cCccCHhHhc----CcccCCEEECCCC-cCCccCH-----
Confidence 3456677665 344444 111 23678888888873 3333322222 4788888888874 3433222
Q ss_pred ccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEec
Q 045653 90 SISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSN 169 (272)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~ 169 (272)
..+..+++|+.|++.++++..+.+. .+..+++|++|++.+
T Consensus 77 ------------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~ 116 (251)
T 3m19_A 77 ------------------------------------GVFDDLTELGTLGLANNQLASLPLG----VFDHLTQLDKLYLGG 116 (251)
T ss_dssp ------------------------------------TTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCS
T ss_pred ------------------------------------hHhccCCcCCEEECCCCcccccChh----HhcccCCCCEEEcCC
Confidence 1124456666666666655543222 344566666666666
Q ss_pred CcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEE
Q 045653 170 CHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSL 249 (272)
Q Consensus 170 c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 249 (272)
+ .++.+ +...+..+++|+.|+++++ .+..++. . ....+++|+.|+++++ .++.++.... ..+++|++|
T Consensus 117 N-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~--~-----~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L 184 (251)
T 3m19_A 117 N-QLKSL-PSGVFDRLTKLKELRLNTN-QLQSIPA--G-----AFDKLTNLQTLSLSTN-QLQSVPHGAF-DRLGKLQTI 184 (251)
T ss_dssp S-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT--T-----TTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEE
T ss_pred C-cCCCc-ChhHhccCCcccEEECcCC-cCCccCH--H-----HcCcCcCCCEEECCCC-cCCccCHHHH-hCCCCCCEE
Confidence 3 44444 4344456666666666665 3444331 0 1222466666666664 4555544221 355666666
Q ss_pred eecCCC
Q 045653 250 EATGCD 255 (272)
Q Consensus 250 ~i~~c~ 255 (272)
++.+++
T Consensus 185 ~l~~N~ 190 (251)
T 3m19_A 185 TLFGNQ 190 (251)
T ss_dssp ECCSCC
T ss_pred EeeCCc
Confidence 666543
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.21 E-value=1e-10 Score=107.04 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=81.7
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcc--eeecc
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLL--GIISE 205 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~--~~~~~ 205 (272)
+..+++|+.|++.+|.+..+.+. ..+..+++|++|++.+|. +... .+..+.++++|+.|++.+|. +. .++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~p-- 463 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEF---SVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNS-FQENFLP-- 463 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTS---CTTTTCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCE-EGGGEEC--
T ss_pred ccccCCCCEEEccCCccccccch---hhhhcCCCCCEEeCcCCc-cccc-chhhhhcCCcCcEEECcCCc-Cccccch--
Confidence 45677888888887766543221 135578889999998864 3444 33456788899999998874 32 222
Q ss_pred CCccccCCccCCCccCeeecccccccccc-cCCCccccCCCcCEEeecCCCCCccccccc
Q 045653 206 DTAIQVTPCFVFPRVSTLRLIDLPKLRFF-YPGMHTSEWPTLQSLEATGCDNLKIFGSEL 264 (272)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~ 264 (272)
. ....+++|+.|+++++ +++.+ +..+ ..+++|++|++++| +++.++++.
T Consensus 464 ~------~~~~l~~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~ 513 (570)
T 2z63_A 464 D------IFTELRNLTFLDLSQC-QLEQLSPTAF--NSLSSLQVLNMASN-QLKSVPDGI 513 (570)
T ss_dssp S------CCTTCTTCCEEECTTS-CCCEECTTTT--TTCTTCCEEECCSS-CCSCCCTTT
T ss_pred h------hhhcccCCCEEECCCC-ccccCChhhh--hcccCCCEEeCCCC-cCCCCCHHH
Confidence 2 2334599999999997 56666 4444 67899999999998 577666543
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.20 E-value=1.3e-10 Score=106.02 Aligned_cols=212 Identities=17% Similarity=0.211 Sum_probs=116.1
Q ss_pred CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653 4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC 83 (272)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 83 (272)
+|...+++|++|+++++. ++.+. +.....+++|++|+++++ .+......... .+++|+.|+++++ .++.++
T Consensus 20 ip~~~~~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~----~l~~L~~L~Ls~n-~l~~~~ 90 (549)
T 2z81_A 20 IPSGLTAAMKSLDLSFNK-ITYIG--HGDLRACANLQVLILKSS-RINTIEGDAFY----SLGSLEHLDLSDN-HLSSLS 90 (549)
T ss_dssp CCSCCCTTCCEEECCSSC-CCEEC--SSTTSSCTTCCEEECTTS-CCCEECTTTTT----TCTTCCEEECTTS-CCCSCC
T ss_pred ccccCCCCccEEECcCCc-cCccC--hhhhhcCCcccEEECCCC-CcCccChhhcc----ccccCCEEECCCC-ccCccC
Confidence 455566788888888854 54441 234556888888888887 44444433222 4788888888875 444443
Q ss_pred cCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEecccc-ceEeccCCCCCCCCCCCCc
Q 045653 84 REVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEIN-VEKIWRSQVPAKFPRFQSL 162 (272)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~i~~~~~~~~~~~l~~L 162 (272)
+..... +++|+ .+++..+.-.. ...+..+..+++|+.|++.+|+ +..+.+. .+..+++|
T Consensus 91 ~~~~~~-------------l~~L~-~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~----~~~~l~~L 150 (549)
T 2z81_A 91 SSWFGP-------------LSSLK-YLNLMGNPYQT--LGVTSLFPNLTNLQTLRIGNVETFSEIRRI----DFAGLTSL 150 (549)
T ss_dssp HHHHTT-------------CTTCC-EEECTTCCCSS--SCSSCSCTTCTTCCEEEEEESSSCCEECTT----TTTTCCEE
T ss_pred HHHhcc-------------CCCCc-EEECCCCcccc--cchhhhhhccCCccEEECCCCccccccCHh----hhhccccc
Confidence 321111 23333 44444433211 0122344566677777777663 4443222 34456777
Q ss_pred CEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccC--CCcc
Q 045653 163 TRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYP--GMHT 240 (272)
Q Consensus 163 ~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~ 240 (272)
++|++.++. +... .+..+..+++|++|++.++. +..++ ... ...+++|+.|+++++ .++.... ....
T Consensus 151 ~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~-~~~~~--~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~~~~ 219 (549)
T 2z81_A 151 NELEIKALS-LRNY-QSQSLKSIRDIHHLTLHLSE-SAFLL--EIF-----ADILSSVRYLELRDT-NLARFQFSPLPVD 219 (549)
T ss_dssp EEEEEEETT-CCEE-CTTTTTTCSEEEEEEEECSB-STTHH--HHH-----HHSTTTBSEEEEESC-BCTTCCCCCCSSC
T ss_pred CeeeccCCc-cccc-ChhhhhccccCceEecccCc-ccccc--hhh-----HhhcccccEEEccCC-ccccccccccchh
Confidence 777776643 3333 22345566677777766643 22111 000 122578888888875 4444321 1112
Q ss_pred ccCCCcCEEeecCCC
Q 045653 241 SEWPTLQSLEATGCD 255 (272)
Q Consensus 241 ~~~~~L~~L~i~~c~ 255 (272)
..+++|++|++.++.
T Consensus 220 ~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 220 EVSSPMKKLAFRGSV 234 (549)
T ss_dssp CCCCCCCEEEEESCE
T ss_pred hhhhcccceeccccc
Confidence 456788888888773
No 63
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.19 E-value=1.4e-10 Score=96.61 Aligned_cols=193 Identities=15% Similarity=0.150 Sum_probs=129.3
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccce-eccccCeEEecCCCCccccccCc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEG-IFAQISCLSLGNLPQLTSFCREV 86 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~~~~~~ 86 (272)
.+++|++|.+.++. ++.+ .....+++|++|++.++. +.... .+ .+++|+.|+++++ .++.++...
T Consensus 39 ~l~~L~~L~l~~~~-i~~~----~~l~~l~~L~~L~l~~n~-l~~~~-------~l~~l~~L~~L~L~~n-~l~~~~~~~ 104 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKSV----QGIQYLPNVRYLALGGNK-LHDIS-------ALKELTNLTYLILTGN-QLQSLPNGV 104 (272)
T ss_dssp HHTTCCEEECTTSC-CCCC----TTGGGCTTCCEEECTTSC-CCCCG-------GGTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred cccceeeeeeCCCC-cccc----cccccCCCCcEEECCCCC-CCCch-------hhcCCCCCCEEECCCC-ccCccChhH
Confidence 45789999998853 4444 345678999999999984 33321 22 5899999999986 555555432
Q ss_pred cccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEE
Q 045653 87 KRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLV 166 (272)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~ 166 (272)
... ++.|+ .+++..+.-.. ..+..+..+++|+.|++.+|++..+.+. .+..+++|++|+
T Consensus 105 ~~~-------------l~~L~-~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~ 163 (272)
T 3rfs_A 105 FDK-------------LTNLK-ELVLVENQLQS---LPDGVFDKLTNLTYLNLAHNQLQSLPKG----VFDKLTNLTELD 163 (272)
T ss_dssp TTT-------------CTTCC-EEECTTSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEE
T ss_pred hcC-------------CcCCC-EEECCCCcCCc---cCHHHhccCCCCCEEECCCCccCccCHH----HhccCccCCEEE
Confidence 211 34455 66666654322 1223357889999999999977764332 356789999999
Q ss_pred EecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCc
Q 045653 167 VSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTL 246 (272)
Q Consensus 167 i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 246 (272)
+.++ .++.+ +...+..+++|+.|++.++ .+..++. . ....+++|+.|++.+++-. ..++.|
T Consensus 164 l~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~--~-----~~~~l~~L~~L~l~~N~~~---------~~~~~l 224 (272)
T 3rfs_A 164 LSYN-QLQSL-PEGVFDKLTQLKDLRLYQN-QLKSVPD--G-----VFDRLTSLQYIWLHDNPWD---------CTCPGI 224 (272)
T ss_dssp CCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCSCCCT--T-----TTTTCTTCCEEECCSSCBC---------CCTTTT
T ss_pred CCCC-CcCcc-CHHHhcCCccCCEEECCCC-cCCccCH--H-----HHhCCcCCCEEEccCCCcc---------ccCcHH
Confidence 9996 56666 5556788999999999997 4655542 1 1234599999999886422 245566
Q ss_pred CEEeecCC
Q 045653 247 QSLEATGC 254 (272)
Q Consensus 247 ~~L~i~~c 254 (272)
+.+++..+
T Consensus 225 ~~l~~~~n 232 (272)
T 3rfs_A 225 RYLSEWIN 232 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 64
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=2.6e-10 Score=109.24 Aligned_cols=121 Identities=15% Similarity=0.184 Sum_probs=79.3
Q ss_pred CCCCccEEEeccccceEeccCCCC---CCCCCCCCcCEEEEecCcCCccccchHHH-hccccCcEEEeecCCCcceeecc
Q 045653 130 RLPKLEALELHEINVEKIWRSQVP---AKFPRFQSLTRLVVSNCHKLKYLFSASMI-RSVEQLQHLDICLCKGLLGIISE 205 (272)
Q Consensus 130 ~l~~L~~L~L~~~~l~~i~~~~~~---~~~~~l~~L~~L~i~~c~~l~~l~~~~~~-~~l~~L~~L~i~~c~~l~~~~~~ 205 (272)
.+++|+.|++++|++..+...... +...++++|++|++.+| .+..+ |.... ..+++|+.|+++++ .+..++
T Consensus 695 ~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~l-p~~l~~~~l~~L~~L~Ls~N-~L~~lp-- 769 (876)
T 4ecn_A 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSL-SDDFRATTLPYLSNMDVSYN-CFSSFP-- 769 (876)
T ss_dssp TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCC-CGGGSTTTCTTCCEEECCSS-CCSSCC--
T ss_pred cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCccc-hHHhhhccCCCcCEEEeCCC-CCCccc--
Confidence 577888888888866653222111 01223458999999886 55565 53322 37899999999886 455543
Q ss_pred CCccccCCccCCCccCeeeccccc------ccccccCCCccccCCCcCEEeecCCCCCccccccc
Q 045653 206 DTAIQVTPCFVFPRVSTLRLIDLP------KLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSEL 264 (272)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~c~------~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~ 264 (272)
.. ...+++|+.|++++++ -...++..+ ..+++|+.|++++|. ++.+|...
T Consensus 770 ~~------l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l--~~L~~L~~L~Ls~N~-L~~Ip~~l 825 (876)
T 4ecn_A 770 TQ------PLNSSQLKAFGIRHQRDAEGNRILRQWPTGI--TTCPSLIQLQIGSND-IRKVDEKL 825 (876)
T ss_dssp CG------GGGCTTCCEEECCCCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSSC-CCBCCSCC
T ss_pred hh------hhcCCCCCEEECCCCCCcccccccccChHHH--hcCCCCCEEECCCCC-CCccCHhh
Confidence 22 2345999999997633 344455555 679999999999985 58787764
No 65
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.17 E-value=1.1e-10 Score=92.35 Aligned_cols=87 Identities=13% Similarity=0.170 Sum_probs=65.8
Q ss_pred ccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeec
Q 045653 125 FNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIIS 204 (272)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 204 (272)
+..+..+++|+.|++++|++....+. .+..+++|++|++.+|..+.++ + .+..+++|+.|++++|. ++.+.
T Consensus 105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~----~l~~l~~L~~L~L~~n~~i~~~-~--~l~~l~~L~~L~l~~n~-i~~~~- 175 (197)
T 4ezg_A 105 IPNLSGLTSLTLLDISHSAHDDSILT----KINTLPKVNSIDLSYNGAITDI-M--PLKTLPELKSLNIQFDG-VHDYR- 175 (197)
T ss_dssp SCCCTTCTTCCEEECCSSBCBGGGHH----HHTTCSSCCEEECCSCTBCCCC-G--GGGGCSSCCEEECTTBC-CCCCT-
T ss_pred ChhhcCCCCCCEEEecCCccCcHhHH----HHhhCCCCCEEEccCCCCcccc-H--hhcCCCCCCEEECCCCC-CcChH-
Confidence 44457789999999999976642222 3457899999999998877777 4 57889999999999873 54432
Q ss_pred cCCccccCCccCCCccCeeecccc
Q 045653 205 EDTAIQVTPCFVFPRVSTLRLIDL 228 (272)
Q Consensus 205 ~~~~~~~~~~~~l~~L~~L~l~~c 228 (272)
....+++|+.|++.+.
T Consensus 176 --------~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 176 --------GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp --------TGGGCSSCCEEEECBC
T ss_pred --------HhccCCCCCEEEeeCc
Confidence 2344699999999875
No 66
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.17 E-value=1.6e-10 Score=97.30 Aligned_cols=102 Identities=18% Similarity=0.240 Sum_probs=51.6
Q ss_pred CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCc
Q 045653 129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTA 208 (272)
Q Consensus 129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 208 (272)
..+++|+.|++.+|++..+ + .+..+++|++|++.++ .+..+ ..+..+++|+.|++++| .+..+..
T Consensus 109 ~~l~~L~~L~L~~n~i~~~-~-----~l~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N-~l~~~~~---- 173 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDI-N-----GLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVP---- 173 (291)
T ss_dssp TTCTTCCEEECTTSCCCCC-G-----GGGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS-CCCCCGG----
T ss_pred ccCCCCCEEECCCCcCCCC-h-----hhcCCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCC-ccccchh----
Confidence 4456666666666644442 1 1334566666666653 33333 23455666666666654 2333321
Q ss_pred cccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCC
Q 045653 209 IQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGC 254 (272)
Q Consensus 209 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c 254 (272)
...+++|+.|+++++ .+++++. . ..+++|+.|+++++
T Consensus 174 -----l~~l~~L~~L~L~~N-~i~~l~~-l--~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 174 -----LAGLTKLQNLYLSKN-HISDLRA-L--AGLKNLDVLELFSQ 210 (291)
T ss_dssp -----GTTCTTCCEEECCSS-CCCBCGG-G--TTCTTCSEEEEEEE
T ss_pred -----hcCCCccCEEECCCC-cCCCChh-h--ccCCCCCEEECcCC
Confidence 122356666666554 4444432 2 35566666666554
No 67
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.17 E-value=4.6e-10 Score=100.41 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=33.1
Q ss_pred CCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcc
Q 045653 7 DAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLT 80 (272)
Q Consensus 7 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 80 (272)
..+++|++|+++++ .++.+ +.+.+++|++|++.++. +...+. + .+++|+.|+++++..+.
T Consensus 103 ~~l~~L~~L~L~~N-~l~~l-----~~~~l~~L~~L~l~~N~-l~~l~l---~----~l~~L~~L~l~~n~~~~ 162 (457)
T 3bz5_A 103 TPLTKLTYLNCDTN-KLTKL-----DVSQNPLLTYLNCARNT-LTEIDV---S----HNTQLTELDCHLNKKIT 162 (457)
T ss_dssp TTCTTCCEEECCSS-CCSCC-----CCTTCTTCCEEECTTSC-CSCCCC---T----TCTTCCEEECTTCSCCC
T ss_pred CCCCcCCEEECCCC-cCCee-----cCCCCCcCCEEECCCCc-cceecc---c----cCCcCCEEECCCCCccc
Confidence 45677888888775 34433 14456777777777662 332211 0 34555555555554333
No 68
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.17 E-value=6.8e-10 Score=99.32 Aligned_cols=156 Identities=16% Similarity=0.153 Sum_probs=85.5
Q ss_pred CCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccC
Q 045653 6 CDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCRE 85 (272)
Q Consensus 6 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 85 (272)
-..+++|++|+++++. ++.+ +.+.+++|++|+++++ .+...+ .+ .+++|+.|+++++ .++.++.+
T Consensus 81 ~~~l~~L~~L~Ls~N~-l~~~-----~~~~l~~L~~L~L~~N-~l~~l~---~~----~l~~L~~L~l~~N-~l~~l~l~ 145 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNK-LTNL-----DVTPLTKLTYLNCDTN-KLTKLD---VS----QNPLLTYLNCARN-TLTEIDVS 145 (457)
T ss_dssp CTTCTTCSEEECCSSC-CSCC-----CCTTCTTCCEEECCSS-CCSCCC---CT----TCTTCCEEECTTS-CCSCCCCT
T ss_pred cccCCCCCEEECcCCC-Ccee-----ecCCCCcCCEEECCCC-cCCeec---CC----CCCcCCEEECCCC-ccceeccc
Confidence 4567899999999853 4444 2567899999999998 444432 11 5899999999875 44444321
Q ss_pred ccccccc-c----c--cccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCC
Q 045653 86 VKRHSIS-S----N--TKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPR 158 (272)
Q Consensus 86 ~~~~~~~-~----~--~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~ 158 (272)
.. ..+. + + +........+.|+ .+++..+.- . .++ +..+++|+.|++.+|++..+ .+..
T Consensus 146 ~l-~~L~~L~l~~n~~~~~~~~~~l~~L~-~L~ls~n~l-~---~l~--l~~l~~L~~L~l~~N~l~~~-------~l~~ 210 (457)
T 3bz5_A 146 HN-TQLTELDCHLNKKITKLDVTPQTQLT-TLDCSFNKI-T---ELD--VSQNKLLNRLNCDTNNITKL-------DLNQ 210 (457)
T ss_dssp TC-TTCCEEECTTCSCCCCCCCTTCTTCC-EEECCSSCC-C---CCC--CTTCTTCCEEECCSSCCSCC-------CCTT
T ss_pred cC-CcCCEEECCCCCcccccccccCCcCC-EEECCCCcc-c---eec--cccCCCCCEEECcCCcCCee-------cccc
Confidence 11 0111 0 0 0000111223333 444433321 1 111 34556666666666655442 1335
Q ss_pred CCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653 159 FQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC 196 (272)
Q Consensus 159 l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 196 (272)
+++|++|+++++ .++.+ | +..+++|+.|++.++
T Consensus 211 l~~L~~L~Ls~N-~l~~i-p---~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 211 NIQLTFLDCSSN-KLTEI-D---VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CTTCSEEECCSS-CCSCC-C---CTTCTTCSEEECCSS
T ss_pred CCCCCEEECcCC-ccccc-C---ccccCCCCEEEeeCC
Confidence 677777777663 34444 3 456677777777665
No 69
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.17 E-value=5.3e-10 Score=100.14 Aligned_cols=206 Identities=17% Similarity=0.174 Sum_probs=106.2
Q ss_pred CCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCc
Q 045653 7 DAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREV 86 (272)
Q Consensus 7 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 86 (272)
..+++|++|+++++. ++.+ .....+++|++|++.+|. +..... .+ .+++|+.|+++++ .++.++...
T Consensus 174 ~~l~~L~~L~l~~n~-l~~~----~~l~~l~~L~~L~l~~n~-l~~~~~--~~----~l~~L~~L~l~~n-~l~~~~~l~ 240 (466)
T 1o6v_A 174 ANLTTLERLDISSNK-VSDI----SVLAKLTNLESLIATNNQ-ISDITP--LG----ILTNLDELSLNGN-QLKDIGTLA 240 (466)
T ss_dssp TTCTTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSSC-CCCCGG--GG----GCTTCCEEECCSS-CCCCCGGGG
T ss_pred ccCCCCCEEECcCCc-CCCC----hhhccCCCCCEEEecCCc-cccccc--cc----ccCCCCEEECCCC-Ccccchhhh
Confidence 356889999998864 4443 334567888888888874 222211 11 4667777777665 233321100
Q ss_pred cccccc-ccc-----cc-ccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCC
Q 045653 87 KRHSIS-SNT-----KD-SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRF 159 (272)
Q Consensus 87 ~~~~~~-~~~-----~~-~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l 159 (272)
....+. +.+ .. .....++.|+ .+++..+.-.. ++. +..+++|+.|++.+|++..+.+ +..+
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~-~L~l~~n~l~~----~~~-~~~l~~L~~L~L~~n~l~~~~~------~~~l 308 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAPLSGLTKLT-ELKLGANQISN----ISP-LAGLTALTNLELNENQLEDISP------ISNL 308 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGGGTTCTTCS-EEECCSSCCCC----CGG-GTTCTTCSEEECCSSCCSCCGG------GGGC
T ss_pred cCCCCCEEECCCCccccchhhhcCCCCC-EEECCCCccCc----ccc-ccCCCccCeEEcCCCcccCchh------hcCC
Confidence 000000 000 00 0001122333 34443332111 111 3455666666666665444211 2356
Q ss_pred CCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCc
Q 045653 160 QSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMH 239 (272)
Q Consensus 160 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 239 (272)
++|++|++.+| .+..+ + .+..+++|+.|++.+| .+..+. ....+++|+.|+++++ .++.... .
T Consensus 309 ~~L~~L~L~~n-~l~~~-~--~~~~l~~L~~L~l~~n-~l~~~~---------~l~~l~~L~~L~l~~n-~l~~~~~-~- 371 (466)
T 1o6v_A 309 KNLTYLTLYFN-NISDI-S--PVSSLTKLQRLFFYNN-KVSDVS---------SLANLTNINWLSAGHN-QISDLTP-L- 371 (466)
T ss_dssp TTCSEEECCSS-CCSCC-G--GGGGCTTCCEEECCSS-CCCCCG---------GGTTCTTCCEEECCSS-CCCBCGG-G-
T ss_pred CCCCEEECcCC-cCCCc-h--hhccCccCCEeECCCC-ccCCch---------hhccCCCCCEEeCCCC-ccCccch-h-
Confidence 66777777665 34444 2 1456677777777665 343331 1234588888888877 4444443 2
Q ss_pred cccCCCcCEEeecCCC
Q 045653 240 TSEWPTLQSLEATGCD 255 (272)
Q Consensus 240 ~~~~~~L~~L~i~~c~ 255 (272)
..+++|+.|++.+|+
T Consensus 372 -~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 372 -ANLTRITQLGLNDQA 386 (466)
T ss_dssp -TTCTTCCEEECCCEE
T ss_pred -hcCCCCCEEeccCCc
Confidence 578888888888774
No 70
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.16 E-value=2.6e-09 Score=102.57 Aligned_cols=163 Identities=14% Similarity=0.192 Sum_probs=102.2
Q ss_pred CCCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcccc
Q 045653 3 KVPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSF 82 (272)
Q Consensus 3 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 82 (272)
.+|. ..++|++|+|+++ .++.+. +.....+++|+.|++++|.....+...... .+++|+.|+++++ .+..+
T Consensus 18 ~vP~-lp~~l~~LdLs~N-~i~~i~--~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~----~L~~L~~L~Ls~N-~l~~~ 88 (844)
T 3j0a_A 18 QVPQ-VLNTTERLLLSFN-YIRTVT--ASSFPFLEQLQLLELGSQYTPLTIDKEAFR----NLPNLRILDLGSS-KIYFL 88 (844)
T ss_dssp CCCS-SCTTCCEEEEESC-CCCEEC--SSSCSSCCSCSEEEECTTCCCCEECTTTTS----SCTTCCEEECTTC-CCCEE
T ss_pred CCCC-CCCCcCEEECCCC-cCCccC--hhHCcccccCeEEeCCCCCCccccCHHHhc----CCCCCCEEECCCC-cCccc
Confidence 3565 6688999999985 345441 345567999999999999665555443333 5899999999986 44444
Q ss_pred ccCccccccccccccccccccceeecceeeeccCCCCccccccc--ccCCCCCccEEEeccccceEeccCCCCCCCCCCC
Q 045653 83 CREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFN--DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQ 160 (272)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~--~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~ 160 (272)
.+..... .+.|+ .+++..+.-.. .++. .+..+++|+.|++++|.+..+.+ +..+..++
T Consensus 89 ~p~~~~~-------------l~~L~-~L~Ls~n~l~~---~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~---~~~~~~L~ 148 (844)
T 3j0a_A 89 HPDAFQG-------------LFHLF-ELRLYFCGLSD---AVLKDGYFRNLKALTRLDLSKNQIRSLYL---HPSFGKLN 148 (844)
T ss_dssp CTTSSCS-------------CSSCC-CEECTTCCCSS---CCSTTCCCSSCSSCCEEEEESCCCCCCCC---CGGGGTCS
T ss_pred CHhHccC-------------CcccC-EeeCcCCCCCc---ccccCccccccCCCCEEECCCCccccccc---chhHhhCC
Confidence 3322221 44555 66666654332 1222 26778899999999886655321 12455788
Q ss_pred CcCEEEEecCcCCccccchHHHhcc--ccCcEEEeecC
Q 045653 161 SLTRLVVSNCHKLKYLFSASMIRSV--EQLQHLDICLC 196 (272)
Q Consensus 161 ~L~~L~i~~c~~l~~l~~~~~~~~l--~~L~~L~i~~c 196 (272)
+|++|++.++ .+..+ ....+..+ ++|+.|++.++
T Consensus 149 ~L~~L~Ls~N-~i~~~-~~~~l~~l~~~~L~~L~L~~n 184 (844)
T 3j0a_A 149 SLKSIDFSSN-QIFLV-CEHELEPLQGKTLSFFSLAAN 184 (844)
T ss_dssp SCCEEEEESS-CCCCC-CSGGGHHHHHCSSCCCEECCS
T ss_pred CCCEEECCCC-cCCee-CHHHcccccCCccceEECCCC
Confidence 9999998874 33333 22233444 56666666654
No 71
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.15 E-value=1.3e-10 Score=105.34 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=19.4
Q ss_pred CCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653 217 FPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 217 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 255 (272)
+++|+.|+++++ +++.++... ...+++|++|++++++
T Consensus 443 l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 443 LEALQELNVASN-QLKSVPDGI-FDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCC-cCCccCHHH-hccCCcccEEECcCCC
Confidence 355666666554 455554431 1345556666665554
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.15 E-value=9.2e-10 Score=101.95 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=45.7
Q ss_pred CCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCc
Q 045653 160 QSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMH 239 (272)
Q Consensus 160 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 239 (272)
++|++|++.++ .++.+ + ..+++|+.|+++++ .++.++. .+++|+.|+++++ +++.++..+
T Consensus 221 ~~L~~L~Ls~N-~L~~l-p----~~l~~L~~L~Ls~N-~L~~lp~-----------~~~~L~~L~Ls~N-~L~~lp~~l- 280 (622)
T 3g06_A 221 SGLKELIVSGN-RLTSL-P----VLPSELKELMVSGN-RLTSLPM-----------LPSGLLSLSVYRN-QLTRLPESL- 280 (622)
T ss_dssp TTCCEEECCSS-CCSCC-C----CCCTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSS-CCCSCCGGG-
T ss_pred CCCCEEEccCC-ccCcC-C----CCCCcCcEEECCCC-CCCcCCc-----------ccccCcEEeCCCC-CCCcCCHHH-
Confidence 45555555543 34443 2 34455666666554 3443331 2377888888876 677776654
Q ss_pred cccCCCcCEEeecCCCC
Q 045653 240 TSEWPTLQSLEATGCDN 256 (272)
Q Consensus 240 ~~~~~~L~~L~i~~c~~ 256 (272)
..+++|+.|++++++-
T Consensus 281 -~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 281 -IHLSSETTVNLEGNPL 296 (622)
T ss_dssp -GGSCTTCEEECCSCCC
T ss_pred -hhccccCEEEecCCCC
Confidence 6788888888888753
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.14 E-value=1.6e-10 Score=105.32 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=22.3
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccC
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESC 47 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 47 (272)
.+++|++|+++++ .++.+ . +...+.+++|++|+++++
T Consensus 48 ~l~~L~~L~Ls~n-~i~~~-~-~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 48 ACANLQVLILKSS-RINTI-E-GDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp SCTTCCEEECTTS-CCCEE-C-TTTTTTCTTCCEEECTTS
T ss_pred cCCcccEEECCCC-CcCcc-C-hhhccccccCCEEECCCC
Confidence 4567778887775 33333 1 123445677777777766
No 74
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.14 E-value=1.4e-09 Score=97.38 Aligned_cols=205 Identities=16% Similarity=0.198 Sum_probs=119.0
Q ss_pred CCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCc
Q 045653 7 DAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREV 86 (272)
Q Consensus 7 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 86 (272)
..+++|++|.+.+ ++..+ .....+++|++|++++|. +..... .. .+++|+.|+++++. +...++..
T Consensus 153 ~~l~~L~~L~l~~--~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~--l~----~l~~L~~L~l~~n~-l~~~~~~~ 218 (466)
T 1o6v_A 153 SGLTSLQQLSFGN--QVTDL----KPLANLTTLERLDISSNK-VSDISV--LA----KLTNLESLIATNNQ-ISDITPLG 218 (466)
T ss_dssp TTCTTCSEEEEEE--SCCCC----GGGTTCTTCCEEECCSSC-CCCCGG--GG----GCTTCSEEECCSSC-CCCCGGGG
T ss_pred ccCCcccEeecCC--cccCc----hhhccCCCCCEEECcCCc-CCCChh--hc----cCCCCCEEEecCCc-cccccccc
Confidence 4578899999864 33333 346678999999999985 333221 11 68999999999874 33333211
Q ss_pred cccccc-cccc-----c-ccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCC
Q 045653 87 KRHSIS-SNTK-----D-SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRF 159 (272)
Q Consensus 87 ~~~~~~-~~~~-----~-~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l 159 (272)
....+. +.+. . ......+.|+ .+++..+.-.. +. .+..+++|+.|++.+|++..+.+ +..+
T Consensus 219 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~-~L~l~~n~l~~----~~-~~~~l~~L~~L~l~~n~l~~~~~------~~~l 286 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKDIGTLASLTNLT-DLDLANNQISN----LA-PLSGLTKLTELKLGANQISNISP------LAGL 286 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGGGGGCTTCS-EEECCSSCCCC----CG-GGTTCTTCSEEECCSSCCCCCGG------GTTC
T ss_pred ccCCCCEEECCCCCcccchhhhcCCCCC-EEECCCCcccc----ch-hhhcCCCCCEEECCCCccCcccc------ccCC
Confidence 111111 0000 0 0111223344 44444433211 11 14556677777777765554211 3357
Q ss_pred CCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCc
Q 045653 160 QSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMH 239 (272)
Q Consensus 160 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 239 (272)
++|++|++.++ .+..+ + .+..+++|+.|++.+|. +..+.. ...+++|+.|+++++ .++.++ ..
T Consensus 287 ~~L~~L~L~~n-~l~~~-~--~~~~l~~L~~L~L~~n~-l~~~~~---------~~~l~~L~~L~l~~n-~l~~~~-~l- 349 (466)
T 1o6v_A 287 TALTNLELNEN-QLEDI-S--PISNLKNLTYLTLYFNN-ISDISP---------VSSLTKLQRLFFYNN-KVSDVS-SL- 349 (466)
T ss_dssp TTCSEEECCSS-CCSCC-G--GGGGCTTCSEEECCSSC-CSCCGG---------GGGCTTCCEEECCSS-CCCCCG-GG-
T ss_pred CccCeEEcCCC-cccCc-h--hhcCCCCCCEEECcCCc-CCCchh---------hccCccCCEeECCCC-ccCCch-hh-
Confidence 77777777774 34454 2 25677778888887763 443331 234588999999887 566653 22
Q ss_pred cccCCCcCEEeecCCC
Q 045653 240 TSEWPTLQSLEATGCD 255 (272)
Q Consensus 240 ~~~~~~L~~L~i~~c~ 255 (272)
..+++|+.|++++|+
T Consensus 350 -~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 350 -ANLTNINWLSAGHNQ 364 (466)
T ss_dssp -TTCTTCCEEECCSSC
T ss_pred -ccCCCCCEEeCCCCc
Confidence 578999999998874
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.13 E-value=9.8e-10 Score=90.26 Aligned_cols=161 Identities=18% Similarity=0.196 Sum_probs=97.2
Q ss_pred CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653 4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC 83 (272)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 83 (272)
+|....+++++|++.++. +..+ . +.....+++|++|+++++ .+......... .+++|+.|+++++ .++.++
T Consensus 29 ~p~~~~~~l~~L~L~~n~-l~~~-~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~ 99 (251)
T 3m19_A 29 VPSGIPADTEKLDLQSTG-LATL-S-DATFRGLTKLTWLNLDYN-QLQTLSAGVFD----DLTELGTLGLANN-QLASLP 99 (251)
T ss_dssp CCSCCCTTCCEEECTTSC-CCCC-C-TTTTTTCTTCCEEECTTS-CCCCCCTTTTT----TCTTCCEEECTTS-CCCCCC
T ss_pred cCCCCCCCCCEEEccCCC-cCcc-C-HhHhcCcccCCEEECCCC-cCCccCHhHhc----cCCcCCEEECCCC-cccccC
Confidence 455556789999999853 4444 1 234567899999999997 44444332222 5899999999975 344333
Q ss_pred cCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcC
Q 045653 84 REVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLT 163 (272)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~ 163 (272)
.. .+..+++|+.|+++++++..+.+. .+..+++|+
T Consensus 100 ~~-----------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~ 134 (251)
T 3m19_A 100 LG-----------------------------------------VFDHLTQLDKLYLGGNQLKSLPSG----VFDRLTKLK 134 (251)
T ss_dssp TT-----------------------------------------TTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCC
T ss_pred hh-----------------------------------------HhcccCCCCEEEcCCCcCCCcChh----HhccCCccc
Confidence 21 124556777777777765543222 244567777
Q ss_pred EEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccc
Q 045653 164 RLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDL 228 (272)
Q Consensus 164 ~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 228 (272)
+|++.++ .++.+ +...+..+++|+.|++.++ .+..++.. ....+++|+.|++.++
T Consensus 135 ~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~-------~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 135 ELRLNTN-QLQSI-PAGAFDKLTNLQTLSLSTN-QLQSVPHG-------AFDRLGKLQTITLFGN 189 (251)
T ss_dssp EEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCSCCCTT-------TTTTCTTCCEEECCSC
T ss_pred EEECcCC-cCCcc-CHHHcCcCcCCCEEECCCC-cCCccCHH-------HHhCCCCCCEEEeeCC
Confidence 7777663 45555 4344566677777777765 34443310 1223466777777664
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.12 E-value=1.5e-10 Score=98.26 Aligned_cols=210 Identities=19% Similarity=0.182 Sum_probs=122.4
Q ss_pred CCCCcceeeecccccccccccccccc--cccCCccEEEEccCccceeecCCCcccc-ceeccccCeEEecCCCCcccccc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKV--DSFNELKTIKVESCDEIFAIGGEADVVT-EGIFAQISCLSLGNLPQLTSFCR 84 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~ 84 (272)
.+++|++|+++++. ++.. .+... +.+++|++|+++++. +...+ ...+.. .+.+++|+.|+++++ .+..+++
T Consensus 93 ~l~~L~~L~L~~n~-l~~~--~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~ 166 (312)
T 1wwl_A 93 GISGLQELTLENLE-VTGT--APPPLLEATGPDLNILNLRNVS-WATRD-AWLAELQQWLKPGLKVLSIAQA-HSLNFSC 166 (312)
T ss_dssp TTSCCCEEEEEEEB-CBSC--CCCCSSSCCSCCCSEEEEESCB-CSSSS-SHHHHHHTTCCTTCCEEEEESC-SCCCCCT
T ss_pred CcCCccEEEccCCc-ccch--hHHHHHHhcCCCccEEEccCCC-Ccchh-HHHHHHHHhhcCCCcEEEeeCC-CCccchH
Confidence 36778888887753 2221 02222 567888888888763 33321 111100 001278888888875 3444443
Q ss_pred CccccccccccccccccccceeecceeeeccCCCCcccccccc--cCCCCCccEEEeccccceEeccCCCCCCCCCCCCc
Q 045653 85 EVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFND--KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSL 162 (272)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~--~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L 162 (272)
.... .++.|+ .+++..+.-.. ...++.. +..+++|+.|++.+|++..+. ......+..+++|
T Consensus 167 ~~~~-------------~l~~L~-~L~Ls~N~l~~-~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~l~~L 230 (312)
T 1wwl_A 167 EQVR-------------VFPALS-TLDLSDNPELG-ERGLISALCPLKFPTLQVLALRNAGMETPS-GVCSALAAARVQL 230 (312)
T ss_dssp TTCC-------------CCSSCC-EEECCSCTTCH-HHHHHHHSCTTSCTTCCEEECTTSCCCCHH-HHHHHHHHTTCCC
T ss_pred HHhc-------------cCCCCC-EEECCCCCcCc-chHHHHHHHhccCCCCCEEECCCCcCcchH-HHHHHHHhcCCCC
Confidence 2211 144555 66666654321 1112222 267889999999999666321 1000012356899
Q ss_pred CEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCcccc
Q 045653 163 TRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSE 242 (272)
Q Consensus 163 ~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 242 (272)
++|+++++ .+....+......+++|+.|+++++ .++.++ ... .++|+.|+++++ +++.++. . ..
T Consensus 231 ~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip--~~~--------~~~L~~L~Ls~N-~l~~~p~-~--~~ 294 (312)
T 1wwl_A 231 QGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVP--KGL--------PAKLSVLDLSYN-RLDRNPS-P--DE 294 (312)
T ss_dssp SEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-CCSSCC--SSC--------CSEEEEEECCSS-CCCSCCC-T--TT
T ss_pred CEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-ccChhh--hhc--------cCCceEEECCCC-CCCCChh-H--hh
Confidence 99999884 4555423234456789999999987 355444 111 178999999886 7777755 3 67
Q ss_pred CCCcCEEeecCCC
Q 045653 243 WPTLQSLEATGCD 255 (272)
Q Consensus 243 ~~~L~~L~i~~c~ 255 (272)
+++|++|++++.+
T Consensus 295 l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 295 LPQVGNLSLKGNP 307 (312)
T ss_dssp SCEEEEEECTTCT
T ss_pred CCCCCEEeccCCC
Confidence 8899999988764
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.11 E-value=4.6e-11 Score=109.87 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=96.5
Q ss_pred CCCCcceeeeccccccccccccc------------ccccccCCccEEEEccCccceeecCCCccccce--eccccCeEEe
Q 045653 8 AFPLLESLTLHNLINLERICIDR------------LKVDSFNELKTIKVESCDEIFAIGGEADVVTEG--IFAQISCLSL 73 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~------------~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~--~l~~L~~L~l 73 (272)
.|++|++|.+.+++.+.++...+ .....+++|++|++++|. +..... ..+ .+++|++|++
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~-----~~l~~~~~~L~~L~L 137 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCL-----ELIAKSFKNFKVLVL 137 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHH-----HHHHHHCTTCCEEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHH-----HHHHHhCCCCcEEeC
Confidence 57899999999988776552111 012357899999999984 332111 111 4789999999
Q ss_pred cCCCCccccccCccccccccccccccccccceeecceeeeccCCCC-cccccccccCCCCCccEEEeccccceEeccCCC
Q 045653 74 GNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLD-TSTTLFNDKVRLPKLEALELHEINVEKIWRSQV 152 (272)
Q Consensus 74 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~-~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~ 152 (272)
++|..+........ ...++.|+ .+++..|.-.. ....+......+++|+.|++.+|. ..+....+
T Consensus 138 ~~~~~~~~~~l~~~------------~~~~~~L~-~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l 203 (594)
T 2p1m_B 138 SSCEGFSTDGLAAI------------AATCRNLK-ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSAL 203 (594)
T ss_dssp ESCEEEEHHHHHHH------------HHHCTTCC-EEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHH
T ss_pred CCcCCCCHHHHHHH------------HHhCCCCC-EEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHH
Confidence 99876554110000 00134555 66666554111 111233333467899999998874 11111111
Q ss_pred CCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653 153 PAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC 196 (272)
Q Consensus 153 ~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 196 (272)
......+++|++|++.+|..+..+ + ..+..+++|++|++.+|
T Consensus 204 ~~l~~~~~~L~~L~L~~~~~~~~l-~-~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 204 ERLVTRCPNLKSLKLNRAVPLEKL-A-TLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHHHHCTTCCEEECCTTSCHHHH-H-HHHHHCTTCSEEECSBC
T ss_pred HHHHHhCCCCcEEecCCCCcHHHH-H-HHHhcCCcceEcccccc
Confidence 111224688999999988766664 3 45667888888875443
No 78
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.11 E-value=4.5e-09 Score=100.89 Aligned_cols=63 Identities=16% Similarity=0.075 Sum_probs=41.2
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCC
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLP 77 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 77 (272)
.+++|++|+++++.....+ . +.....+++|+.|+++++. +........+ .+++|+.|+++++.
T Consensus 46 ~l~~L~~LdLs~n~~~~~i-~-~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~----~l~~L~~L~Ls~n~ 108 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTI-D-KEAFRNLPNLRILDLGSSK-IYFLHPDAFQ----GLFHLFELRLYFCG 108 (844)
T ss_dssp SCCSCSEEEECTTCCCCEE-C-TTTTSSCTTCCEEECTTCC-CCEECTTSSC----SCSSCCCEECTTCC
T ss_pred ccccCeEEeCCCCCCcccc-C-HHHhcCCCCCCEEECCCCc-CcccCHhHcc----CCcccCEeeCcCCC
Confidence 5678899999887554444 1 2445678889999998874 4443332222 46777888777763
No 79
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.11 E-value=3.7e-10 Score=104.32 Aligned_cols=167 Identities=14% Similarity=0.235 Sum_probs=88.2
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK 87 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 87 (272)
.+++|++|.+.++. +..+ +....+++|+.|++++|. +..... .. .+++|+.|+++++ .+..++..
T Consensus 41 ~L~~L~~L~l~~n~-i~~l----~~l~~l~~L~~L~Ls~N~-l~~~~~--l~----~l~~L~~L~Ls~N-~l~~l~~l-- 105 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSV----QGIQYLPNVTKLFLNGNK-LTDIKP--LT----NLKNLGWLFLDEN-KIKDLSSL-- 105 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCC----TTGGGCTTCCEEECTTSC-CCCCGG--GG----GCTTCCEEECCSS-CCCCCTTS--
T ss_pred cCCCCCEEECcCCC-CCCC----hHHccCCCCCEEEeeCCC-CCCChh--hc----cCCCCCEEECcCC-CCCCChhh--
Confidence 35667777776643 3333 234567778888887773 332221 11 4677777777765 34433211
Q ss_pred ccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEE
Q 045653 88 RHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVV 167 (272)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i 167 (272)
..++.|+ .+.+..+.-.. + ..+..+++|+.|+|++|++..+ . .+..+++|+.|++
T Consensus 106 -------------~~l~~L~-~L~Ls~N~l~~----l-~~l~~l~~L~~L~Ls~N~l~~l--~----~l~~l~~L~~L~L 160 (605)
T 1m9s_A 106 -------------KDLKKLK-SLSLEHNGISD----I-NGLVHLPQLESLYLGNNKITDI--T----VLSRLTKLDTLSL 160 (605)
T ss_dssp -------------TTCTTCC-EEECTTSCCCC----C-GGGGGCTTCSEEECCSSCCCCC--G----GGGSCTTCSEEEC
T ss_pred -------------ccCCCCC-EEEecCCCCCC----C-ccccCCCccCEEECCCCccCCc--h----hhcccCCCCEEEC
Confidence 0123333 44444433211 1 2245566777777776655542 1 2335667777777
Q ss_pred ecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccc
Q 045653 168 SNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDL 228 (272)
Q Consensus 168 ~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 228 (272)
.+| .+..+ ++ +..+++|+.|++++| .+..+. .+..+++|+.|+++++
T Consensus 161 s~N-~l~~~-~~--l~~l~~L~~L~Ls~N-~i~~l~---------~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 161 EDN-QISDI-VP--LAGLTKLQNLYLSKN-HISDLR---------ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CSS-CCCCC-GG--GTTCTTCCEEECCSS-CCCBCG---------GGTTCTTCSEEECCSE
T ss_pred cCC-cCCCc-hh--hccCCCCCEEECcCC-CCCCCh---------HHccCCCCCEEEccCC
Confidence 664 34444 21 566677777777665 343332 1223466777777665
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.09 E-value=4.1e-11 Score=101.67 Aligned_cols=194 Identities=15% Similarity=0.122 Sum_probs=111.0
Q ss_pred cCCccEEEEccCccceeecCCCc--cccceeccccCeEEecCCCCccccccCccccccccccccccccccceeecceeee
Q 045653 36 FNELKTIKVESCDEIFAIGGEAD--VVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVN 113 (272)
Q Consensus 36 ~~~L~~L~l~~c~~l~~~~~~~~--~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~ 113 (272)
+++|++|++.+|. +........ . .+++|+.|+++++.--...+..... .....+.|+ .+.+.
T Consensus 90 ~~~L~~L~l~~n~-l~~~~~~~~~~~----~~~~L~~L~Ls~n~i~~~~~~~~~~----------~~~~~~~L~-~L~Ls 153 (310)
T 4glp_A 90 YSRLKELTLEDLK-ITGTMPPLPLEA----TGLALSSLRLRNVSWATGRSWLAEL----------QQWLKPGLK-VLSIA 153 (310)
T ss_dssp HSCCCEEEEESCC-CBSCCCCCSSSC----CCBCCSSCEEESCCCSSTTSSHHHH----------HTTBCSCCC-EEEEE
T ss_pred cCceeEEEeeCCE-eccchhhhhhhc----cCCCCCEEEeecccccchhhhhHHH----------HhhhccCCC-EEEee
Confidence 4668888888884 332222111 1 4788888888876422211100000 000134555 66666
Q ss_pred ccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccch---HHHhccccCcE
Q 045653 114 LEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSA---SMIRSVEQLQH 190 (272)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~---~~~~~l~~L~~ 190 (272)
.+.-.. ..+..+..+++|+.|++++|++.....-..+..+..+++|++|++.+| .++.+ +. .....+++|++
T Consensus 154 ~n~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 154 QAHSPA---FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETP-TGVCAALAAAGVQPHS 228 (310)
T ss_dssp CCSSCC---CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCH-HHHHHHHHHHTCCCSS
T ss_pred CCCcch---hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCch-HHHHHHHHhcCCCCCE
Confidence 654322 223456788999999999986432100000112346889999999985 45544 22 13467899999
Q ss_pred EEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccc
Q 045653 191 LDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFG 261 (272)
Q Consensus 191 L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~ 261 (272)
|+++++. +....+.. . .....+++|++|+++++ +++.++... .++|++|+++++ +++.+|
T Consensus 229 L~Ls~N~-l~~~~p~~-~---~~~~~~~~L~~L~Ls~N-~l~~lp~~~----~~~L~~L~Ls~N-~l~~~~ 288 (310)
T 4glp_A 229 LDLSHNS-LRATVNPS-A---PRCMWSSALNSLNLSFA-GLEQVPKGL----PAKLRVLDLSSN-RLNRAP 288 (310)
T ss_dssp EECTTSC-CCCCCCSC-C---SSCCCCTTCCCEECCSS-CCCSCCSCC----CSCCSCEECCSC-CCCSCC
T ss_pred EECCCCC-CCccchhh-H---HhccCcCcCCEEECCCC-CCCchhhhh----cCCCCEEECCCC-cCCCCc
Confidence 9999873 55442111 1 11122378888888875 677766644 378888888877 455543
No 81
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.09 E-value=3.8e-12 Score=117.10 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=28.5
Q ss_pred CCccCeeecccccccccccCCCccccCCCcCEEeec-----CCCCCcccc
Q 045653 217 FPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEAT-----GCDNLKIFG 261 (272)
Q Consensus 217 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~-----~c~~l~~l~ 261 (272)
+++|+.|.+ +|.+++..........+++|++|++. +|.+++..|
T Consensus 371 ~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 371 CPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred chhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 467777744 44555544333333468899999998 688887554
No 82
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.08 E-value=2.1e-09 Score=98.45 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=70.8
Q ss_pred CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccc-hHHHhccccCcEEEeecCCCcce-eeccC
Q 045653 129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFS-ASMIRSVEQLQHLDICLCKGLLG-IISED 206 (272)
Q Consensus 129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~-~~~~~~l~~L~~L~i~~c~~l~~-~~~~~ 206 (272)
..+++|+.|++.+|++.... +..+..+++|++|++.++ .++.+.. +..+..+++|+.|+++++. +.. ++...
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~ 423 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSV----FQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRT 423 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTT----TTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCC
T ss_pred cCCCCceEEECCCCccccch----hhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhh
Confidence 45677777777777555422 224456777777777763 4444311 1234566777777777653 333 22110
Q ss_pred C--cc--------cc----CCccCC-CccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccccc
Q 045653 207 T--AI--------QV----TPCFVF-PRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSE 263 (272)
Q Consensus 207 ~--~~--------~~----~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~ 263 (272)
. .. +. .....+ ++|+.|+++++ +++.++... ..+++|++|+++++ +++.+|.+
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDV--THLQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTT--TSSCCCSEEECCSS-CCCCCCTT
T ss_pred hcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhh--cCCCCCCEEECCCC-CCCCCCHH
Confidence 0 00 00 001122 57888888776 677777665 47788888888876 46677665
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.06 E-value=1.7e-09 Score=91.69 Aligned_cols=175 Identities=16% Similarity=0.235 Sum_probs=124.2
Q ss_pred ccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccccccccccccccccceeecceee
Q 045653 33 VDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEV 112 (272)
Q Consensus 33 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i 112 (272)
...+++|++|++.+| .+...+. .. .+++|+.|+++++ .++.++. .. .++.|+ .+++
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~l~~--~~----~l~~L~~L~L~~n-~i~~~~~--~~-------------~l~~L~-~L~L 92 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVTTIEG--VQ----YLNNLIGLELKDN-QITDLAP--LK-------------NLTKIT-ELEL 92 (308)
T ss_dssp HHHHHTCCEEECTTS-CCCCCTT--GG----GCTTCCEEECCSS-CCCCCGG--GT-------------TCCSCC-EEEC
T ss_pred HHHcCCcCEEEeeCC-CccCchh--hh----ccCCCCEEEccCC-cCCCChh--Hc-------------cCCCCC-EEEc
Confidence 345899999999998 4443321 11 5899999999987 5555543 11 144555 6667
Q ss_pred eccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEE
Q 045653 113 NLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLD 192 (272)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~ 192 (272)
..+.- . .+ ..+..+++|+.|++++|++..+. .+..+++|++|++.++ .+..+ + .+..+++|+.|+
T Consensus 93 ~~n~l-~---~~-~~~~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n-~l~~~-~--~l~~l~~L~~L~ 157 (308)
T 1h6u_A 93 SGNPL-K---NV-SAIAGLQSIKTLDLTSTQITDVT------PLAGLSNLQVLYLDLN-QITNI-S--PLAGLTNLQYLS 157 (308)
T ss_dssp CSCCC-S---CC-GGGTTCTTCCEEECTTSCCCCCG------GGTTCTTCCEEECCSS-CCCCC-G--GGGGCTTCCEEE
T ss_pred cCCcC-C---Cc-hhhcCCCCCCEEECCCCCCCCch------hhcCCCCCCEEECCCC-ccCcC-c--cccCCCCccEEE
Confidence 66542 2 12 24578899999999999777632 2557899999999985 55666 3 278899999999
Q ss_pred eecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccc
Q 045653 193 ICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFG 261 (272)
Q Consensus 193 i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~ 261 (272)
+++| .+..+.. ...+++|+.|+++++ .++.++. . ..+++|++|+++++ +++.++
T Consensus 158 l~~n-~l~~~~~---------l~~l~~L~~L~l~~n-~l~~~~~-l--~~l~~L~~L~L~~N-~l~~~~ 211 (308)
T 1h6u_A 158 IGNA-QVSDLTP---------LANLSKLTTLKADDN-KISDISP-L--ASLPNLIEVHLKNN-QISDVS 211 (308)
T ss_dssp CCSS-CCCCCGG---------GTTCTTCCEEECCSS-CCCCCGG-G--GGCTTCCEEECTTS-CCCBCG
T ss_pred ccCC-cCCCChh---------hcCCCCCCEEECCCC-ccCcChh-h--cCCCCCCEEEccCC-ccCccc
Confidence 9997 4555442 234599999999986 6666654 3 68899999999988 455554
No 84
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.05 E-value=2.4e-09 Score=98.83 Aligned_cols=114 Identities=21% Similarity=0.221 Sum_probs=74.7
Q ss_pred cccCCCCCccEEEecccc-ceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeec
Q 045653 126 NDKVRLPKLEALELHEIN-VEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIIS 204 (272)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~-l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 204 (272)
..+..+++|+.|++.+|+ ...+.+. .+..+++|++|+++++ +++.+ ++..+.++++|+.|+++++ +++.+..
T Consensus 463 ~~~~~~~~L~~L~Ls~N~~~~~~~~~----~~~~l~~L~~L~Ls~N-~L~~l-~~~~f~~l~~L~~L~Ls~N-~l~~l~~ 535 (635)
T 4g8a_A 463 GIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQC-QLEQL-SPTAFNSLSSLQVLNMSHN-NFFSLDT 535 (635)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECTTS-CCCBCCC
T ss_pred cccccchhhhhhhhhhcccccccCch----hhhhccccCEEECCCC-ccCCc-ChHHHcCCCCCCEEECCCC-cCCCCCh
Confidence 345567888888888873 3332222 4557888888888885 56666 4456778888888888886 4555542
Q ss_pred cCCccccCCccCCCccCeeecccccccccccCCCccccC-CCcCEEeecCCC
Q 045653 205 EDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEW-PTLQSLEATGCD 255 (272)
Q Consensus 205 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~i~~c~ 255 (272)
. ....+++|+.|++++. +++.++.... ..+ ++|++|+++++|
T Consensus 536 ~-------~~~~l~~L~~L~Ls~N-~l~~~~~~~l-~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 536 F-------PYKCLNSLQVLDYSLN-HIMTSKKQEL-QHFPSSLAFLNLTQND 578 (635)
T ss_dssp G-------GGTTCTTCCEEECTTS-CCCBCCSSCT-TCCCTTCCEEECTTCC
T ss_pred h-------HHhCCCCCCEEECCCC-cCCCCCHHHH-HhhhCcCCEEEeeCCC
Confidence 1 1233588888888875 6666655433 344 578888887644
No 85
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.04 E-value=7.4e-12 Score=115.20 Aligned_cols=43 Identities=2% Similarity=-0.096 Sum_probs=23.3
Q ss_pred CCccCeeecccccccccccCCCccccCCCcCEEeecC---CCCCccc
Q 045653 217 FPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATG---CDNLKIF 260 (272)
Q Consensus 217 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~---c~~l~~l 260 (272)
+++|+.|.+ .|.+++..........+++|++|++.+ |.+++..
T Consensus 377 ~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 377 CQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp CTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 456666666 344444332222223477788887773 5566654
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.03 E-value=7.9e-10 Score=93.69 Aligned_cols=108 Identities=18% Similarity=0.183 Sum_probs=50.5
Q ss_pred CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhcc---ccCcEEEeecCCCcceeecc
Q 045653 129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSV---EQLQHLDICLCKGLLGIISE 205 (272)
Q Consensus 129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l---~~L~~L~i~~c~~l~~~~~~ 205 (272)
..+++|+.|++++|++..+... ....+..+++|++|+++++ .+....|. .+..+ ++|++|+++++ .++.++
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~~l~~L~~L~Ls~N-~l~~~~p~-~~~~~~~~~~L~~L~Ls~N-~l~~lp-- 267 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGV-CAALAAAGVQPHSLDLSHN-SLRATVNP-SAPRCMWSSALNSLNLSFA-GLEQVP-- 267 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHH-HHHHHHHTCCCSSEECTTS-CCCCCCCS-CCSSCCCCTTCCCEECCSS-CCCSCC--
T ss_pred hcCCCCCEEECCCCCCCchHHH-HHHHHhcCCCCCEEECCCC-CCCccchh-hHHhccCcCcCCEEECCCC-CCCchh--
Confidence 4556666666666654331110 0000123466666666653 23333121 12222 56666666654 344332
Q ss_pred CCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCC
Q 045653 206 DTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGC 254 (272)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c 254 (272)
... +++|+.|+++++ +++.++. . ..+++|+.|++++.
T Consensus 268 ~~~--------~~~L~~L~Ls~N-~l~~~~~-~--~~l~~L~~L~L~~N 304 (310)
T 4glp_A 268 KGL--------PAKLRVLDLSSN-RLNRAPQ-P--DELPEVDNLTLDGN 304 (310)
T ss_dssp SCC--------CSCCSCEECCSC-CCCSCCC-T--TSCCCCSCEECSST
T ss_pred hhh--------cCCCCEEECCCC-cCCCCch-h--hhCCCccEEECcCC
Confidence 111 156666666654 4554433 1 35566666666654
No 87
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.02 E-value=2.1e-09 Score=97.33 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=37.9
Q ss_pred CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCc
Q 045653 129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTA 208 (272)
Q Consensus 129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 208 (272)
..+++|+.|++++|++....+. .+ .++|++|+++++ +++.+ |.. +..+++|+.|+++++ .++.++..
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~----~l--~~~L~~L~Ls~N-~l~~i-p~~-~~~l~~L~~L~L~~N-~l~~l~~~--- 462 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFR----CL--PPRIKVLDLHSN-KIKSI-PKQ-VVKLEALQELNVASN-QLKSVPDG--- 462 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGG----SC--CTTCCEEECCSS-CCCCC-CGG-GGGCTTCCEEECCSS-CCCCCCTT---
T ss_pred ccCccCCEEECcCCCCCcchhh----hh--cccCCEEECCCC-ccccc-chh-hhcCCCCCEEECCCC-cCCccCHH---
Confidence 3445555555555544321111 11 145566666553 33443 322 235566666666554 34433311
Q ss_pred cccCCccCCCccCeeeccccc
Q 045653 209 IQVTPCFVFPRVSTLRLIDLP 229 (272)
Q Consensus 209 ~~~~~~~~l~~L~~L~l~~c~ 229 (272)
....+++|+.|++++++
T Consensus 463 ----~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 463 ----IFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp ----TTTTCTTCCEEECCSSC
T ss_pred ----HhccCCcccEEECcCCC
Confidence 11223556666665543
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.01 E-value=7.4e-09 Score=93.33 Aligned_cols=204 Identities=15% Similarity=0.123 Sum_probs=121.5
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK 87 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 87 (272)
.+++|++|+|+++. ++.. .+.+.+++|++|++++| .+...+. .++|+.|+++++ .+..++....
T Consensus 56 ~l~~L~~L~Ls~N~-l~~~----~~l~~l~~L~~L~Ls~N-~l~~l~~---------~~~L~~L~L~~N-~l~~~~~~~l 119 (487)
T 3oja_A 56 PFTKLELLNLSSNV-LYET----LDLESLSTLRTLDLNNN-YVQELLV---------GPSIETLHAANN-NISRVSCSRG 119 (487)
T ss_dssp TCTTCCEEECTTSC-CEEE----EECTTCTTCCEEECCSS-EEEEEEE---------CTTCCEEECCSS-CCCCEEECCC
T ss_pred CCCCCCEEEeeCCC-CCCC----cccccCCCCCEEEecCC-cCCCCCC---------CCCcCEEECcCC-cCCCCCcccc
Confidence 56899999999864 4333 22667899999999998 3443321 245555555543 2222222111
Q ss_pred ccccc-cc-----ccc---ccccccceeecceeeeccCCCCcccccccccC-CCCCccEEEeccccceEeccCCCCCCCC
Q 045653 88 RHSIS-SN-----TKD---SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKV-RLPKLEALELHEINVEKIWRSQVPAKFP 157 (272)
Q Consensus 88 ~~~~~-~~-----~~~---~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~l~~i~~~~~~~~~~ 157 (272)
. .+. +. +.. .....++.|+ .+++..+.-.. ..+..+. .+++|+.|++++|.+..+.+ ..
T Consensus 120 ~-~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~---~~~~~l~~~l~~L~~L~Ls~N~l~~~~~------~~ 188 (487)
T 3oja_A 120 Q-GKKNIYLANNKITMLRDLDEGCRSRVQ-YLDLKLNEIDT---VNFAELAASSDTLEHLNLQYNFIYDVKG------QV 188 (487)
T ss_dssp S-SCEEEECCSSCCCSGGGBCGGGGSSEE-EEECTTSCCCE---EEGGGGGGGTTTCCEEECTTSCCCEEEC------CC
T ss_pred C-CCCEEECCCCCCCCCCchhhcCCCCCC-EEECCCCCCCC---cChHHHhhhCCcccEEecCCCccccccc------cc
Confidence 0 000 00 000 0011244555 66666553322 2333333 68999999999998877522 22
Q ss_pred CCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccc-ccccC
Q 045653 158 RFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKL-RFFYP 236 (272)
Q Consensus 158 ~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~~~~ 236 (272)
.+++|++|+++++ .++.+ ++. +..+++|+.|+++++ .+..++ .. ...+++|+.|++++++-. ..++.
T Consensus 189 ~l~~L~~L~Ls~N-~l~~~-~~~-~~~l~~L~~L~Ls~N-~l~~lp--~~------l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 189 VFAKLKTLDLSSN-KLAFM-GPE-FQSAAGVTWISLRNN-KLVLIE--KA------LRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCTTCCEEECCSS-CCCEE-CGG-GGGGTTCSEEECTTS-CCCEEC--TT------CCCCTTCCEEECTTCCBCHHHHHH
T ss_pred cCCCCCEEECCCC-CCCCC-CHh-HcCCCCccEEEecCC-cCcccc--hh------hccCCCCCEEEcCCCCCcCcchHH
Confidence 5899999999984 56666 543 778999999999996 476665 22 233589999999987543 12222
Q ss_pred CCccccCCCcCEEeec
Q 045653 237 GMHTSEWPTLQSLEAT 252 (272)
Q Consensus 237 ~~~~~~~~~L~~L~i~ 252 (272)
.. ..++.|+.+.+.
T Consensus 257 ~~--~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FF--SKNQRVQTVAKQ 270 (487)
T ss_dssp HH--TTCHHHHHHHHH
T ss_pred HH--HhCCCCcEEecc
Confidence 22 345566665553
No 89
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.00 E-value=2.4e-09 Score=82.36 Aligned_cols=120 Identities=17% Similarity=0.173 Sum_probs=87.0
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT 207 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 207 (272)
+..+++|+.|++.+|.+..+ . .+..+++|++|++.++. +... .+.....+++|+.|+++++ .++.++...
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~- 114 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISV--S----NLPKLPKLKKLELSENR-IFGG-LDMLAEKLPNLTHLNLSGN-KLKDISTLE- 114 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCC--S----SCCCCSSCCEEEEESCC-CCSC-CCHHHHHCTTCCEEECBSS-SCCSSGGGG-
T ss_pred HHhCCCCCEEeCcCCCCCCh--h----hhccCCCCCEEECcCCc-CchH-HHHHHhhCCCCCEEeccCC-ccCcchhHH-
Confidence 45678999999999987764 2 46679999999999865 4553 2346677999999999997 465543211
Q ss_pred ccccCCccCCCccCeeecccccccccccCC--CccccCCCcCEEeecCCCCCccccccc
Q 045653 208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPG--MHTSEWPTLQSLEATGCDNLKIFGSEL 264 (272)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~~~~L~~L~i~~c~~l~~l~~~~ 264 (272)
....+++|+.|+++++ .++..+.. .....+++|++|++.+|. ++.+|.+.
T Consensus 115 -----~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~ 166 (168)
T 2ell_A 115 -----PLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDSD 166 (168)
T ss_dssp -----GGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSSS
T ss_pred -----HHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhccccc
Confidence 1334599999999987 66666550 112678999999999985 55566544
No 90
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.00 E-value=2.8e-08 Score=92.04 Aligned_cols=64 Identities=19% Similarity=0.150 Sum_probs=40.2
Q ss_pred CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653 4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC 83 (272)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 83 (272)
+|...+++|++|++.++ +++.+ +. .+++|++|+++++. +..++. .+++|+.|+++++ .++.++
T Consensus 55 lp~~l~~~L~~L~L~~N-~l~~l---p~---~l~~L~~L~Ls~N~-l~~lp~--------~l~~L~~L~Ls~N-~l~~l~ 117 (622)
T 3g06_A 55 LPDCLPAHITTLVIPDN-NLTSL---PA---LPPELRTLEVSGNQ-LTSLPV--------LPPGLLELSIFSN-PLTHLP 117 (622)
T ss_dssp CCSCCCTTCSEEEECSC-CCSCC---CC---CCTTCCEEEECSCC-CSCCCC--------CCTTCCEEEECSC-CCCCCC
T ss_pred cChhhCCCCcEEEecCC-CCCCC---CC---cCCCCCEEEcCCCc-CCcCCC--------CCCCCCEEECcCC-cCCCCC
Confidence 34445578888888875 45544 11 46888888888874 443332 3677888887764 444444
Q ss_pred c
Q 045653 84 R 84 (272)
Q Consensus 84 ~ 84 (272)
.
T Consensus 118 ~ 118 (622)
T 3g06_A 118 A 118 (622)
T ss_dssp C
T ss_pred C
Confidence 3
No 91
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.99 E-value=6.6e-09 Score=95.13 Aligned_cols=176 Identities=11% Similarity=0.098 Sum_probs=113.8
Q ss_pred CCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccc-cccCccccccccccccccccccceeecceeeecc
Q 045653 37 NELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTS-FCREVKRHSISSNTKDSQDQSMTAITCSYEVNLE 115 (272)
Q Consensus 37 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~ 115 (272)
.+|++|++.++.- ...... . .+++|+.|+++++. +.. .+... . ..+.++ .+++..+
T Consensus 331 ~~L~~L~l~~n~~-~~~~~~--~----~l~~L~~L~l~~n~-l~~~~~~~~-~-------------~l~~L~-~L~L~~N 387 (562)
T 3a79_B 331 MNIKMLSISDTPF-IHMVCP--P----SPSSFTFLNFTQNV-FTDSVFQGC-S-------------TLKRLQ-TLILQRN 387 (562)
T ss_dssp CCCSEEEEESSCC-CCCCCC--S----SCCCCCEEECCSSC-CCTTTTTTC-C-------------SCSSCC-EEECCSS
T ss_pred CcceEEEccCCCc-ccccCc--c----CCCCceEEECCCCc-cccchhhhh-c-------------ccCCCC-EEECCCC
Confidence 5688888888843 222110 1 47888888888763 333 22211 1 134444 5555554
Q ss_pred CCCCcccccccccCCCCCccEEEeccccceE-eccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhcc-ccCcEEEe
Q 045653 116 DKLDTSTTLFNDKVRLPKLEALELHEINVEK-IWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSV-EQLQHLDI 193 (272)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l-~~L~~L~i 193 (272)
. +.....++..+..+++|+.|++++|++.. +... .+..+++|++|++.++. ++...+ ..+ ++|+.|++
T Consensus 388 ~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~~l~~L~~L~l~~n~-l~~~~~----~~l~~~L~~L~L 457 (562)
T 3a79_B 388 G-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR----TCAWAESILVLNLSSNM-LTGSVF----RCLPPKVKVLDL 457 (562)
T ss_dssp C-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC----CCCCCTTCCEEECCSSC-CCGGGG----SSCCTTCSEEEC
T ss_pred C-cCCcccchhhhcCCCCCCEEECCCCcCCCccChh----hhcCcccCCEEECCCCC-CCcchh----hhhcCcCCEEEC
Confidence 2 22111334456788999999999997765 2222 35578999999999865 333312 344 69999999
Q ss_pred ecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCC
Q 045653 194 CLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDN 256 (272)
Q Consensus 194 ~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~ 256 (272)
+++ +++.++ ... ..+++|+.|+++++ +++.++... ...+++|+.|++++++-
T Consensus 458 ~~N-~l~~ip--~~~------~~l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 458 HNN-RIMSIP--KDV------THLQALQELNVASN-QLKSVPDGV-FDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CSS-CCCCCC--TTT------TSSCCCSEEECCSS-CCCCCCTTS-TTTCTTCCCEECCSCCB
T ss_pred CCC-cCcccC--hhh------cCCCCCCEEECCCC-CCCCCCHHH-HhcCCCCCEEEecCCCc
Confidence 987 577665 222 23599999999986 788888762 26789999999998764
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.96 E-value=5.6e-09 Score=83.11 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=19.3
Q ss_pred cCCccEEEEccCccceeecCCCccccceeccccCeEEecCC
Q 045653 36 FNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNL 76 (272)
Q Consensus 36 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c 76 (272)
.++|++|++.++ ++......... .+++|+.|+++++
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~----~l~~L~~L~l~~n 62 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGVFD----ELTSLTQLYLGGN 62 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTT----TCTTCSEEECCSS
T ss_pred CCCCcEEEcCCC-ccCcCChhhhc----ccccCcEEECCCC
Confidence 456777777766 33333222111 3667777777653
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.95 E-value=7.6e-10 Score=91.72 Aligned_cols=166 Identities=16% Similarity=0.201 Sum_probs=80.8
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK 87 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 87 (272)
.+.+++.+.+.+ ..++++ .....+++|+.|++.+| .+...+. .. .+++|+.|+++++ .++.++. .
T Consensus 17 ~l~~l~~l~l~~-~~i~~~----~~~~~l~~L~~L~l~~n-~i~~l~~--l~----~l~~L~~L~L~~N-~i~~~~~--l 81 (263)
T 1xeu_A 17 GLANAVKQNLGK-QSVTDL----VSQKELSGVQNFNGDNS-NIQSLAG--MQ----FFTNLKELHLSHN-QISDLSP--L 81 (263)
T ss_dssp HHHHHHHHHHTC-SCTTSE----ECHHHHTTCSEEECTTS-CCCCCTT--GG----GCTTCCEEECCSS-CCCCCGG--G
T ss_pred HHHHHHHHHhcC-CCcccc----cchhhcCcCcEEECcCC-CcccchH--Hh----hCCCCCEEECCCC-ccCCChh--h
Confidence 334455555554 233333 23445778888888877 4443321 11 4778888888765 3444332 0
Q ss_pred ccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEE
Q 045653 88 RHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVV 167 (272)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i 167 (272)
. .+++|+ .+++..+.-. .++. +.. ++|+.|++++|++..+ + .+..+++|++|++
T Consensus 82 ~-------------~l~~L~-~L~L~~N~l~----~l~~-~~~-~~L~~L~L~~N~l~~~-~-----~l~~l~~L~~L~L 135 (263)
T 1xeu_A 82 K-------------DLTKLE-ELSVNRNRLK----NLNG-IPS-ACLSRLFLDNNELRDT-D-----SLIHLKNLEILSI 135 (263)
T ss_dssp T-------------TCSSCC-EEECCSSCCS----CCTT-CCC-SSCCEEECCSSCCSBS-G-----GGTTCTTCCEEEC
T ss_pred c-------------cCCCCC-EEECCCCccC----CcCc-ccc-CcccEEEccCCccCCC-h-----hhcCcccccEEEC
Confidence 0 022222 3333332211 1111 111 5666666666655442 1 2335666666666
Q ss_pred ecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccc
Q 045653 168 SNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDL 228 (272)
Q Consensus 168 ~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 228 (272)
.++ .++.+ + .+..+++|+.|+++++ .+..+ .....+++|+.|+++++
T Consensus 136 s~N-~i~~~-~--~l~~l~~L~~L~L~~N-~i~~~---------~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 136 RNN-KLKSI-V--MLGFLSKLEVLDLHGN-EITNT---------GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp TTS-CCCBC-G--GGGGCTTCCEEECTTS-CCCBC---------TTSTTCCCCCEEEEEEE
T ss_pred CCC-cCCCC-h--HHccCCCCCEEECCCC-cCcch---------HHhccCCCCCEEeCCCC
Confidence 653 34444 2 3555666666666664 23332 11223466666666554
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.95 E-value=9.1e-10 Score=92.59 Aligned_cols=109 Identities=18% Similarity=0.201 Sum_probs=83.5
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT 207 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 207 (272)
+..+++|+.|++.+|++..+ + .+..+++|++|++.++ .+..+ ..+..+++|+.|+++++ .+..+.
T Consensus 86 l~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~L~~n-~i~~~---~~l~~l~~L~~L~l~~n-~l~~~~---- 150 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDL-S-----SLKDLKKLKSLSLEHN-GISDI---NGLVHLPQLESLYLGNN-KITDIT---- 150 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCG-G-----GGTTCTTCCEEECTTS-CCCCC---GGGGGCTTCCEEECCSS-CCCCCG----
T ss_pred cccCCCCCEEECCCCcCCCC-h-----hhccCCCCCEEECCCC-cCCCC---hhhcCCCCCCEEEccCC-cCCcch----
Confidence 46789999999999977652 1 2557899999999985 56666 35788999999999987 354441
Q ss_pred ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccc
Q 045653 208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFG 261 (272)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~ 261 (272)
.+..+++|+.|+++++ .++.++. . ..+++|+.|+++++ +++.++
T Consensus 151 -----~l~~l~~L~~L~L~~N-~l~~~~~-l--~~l~~L~~L~L~~N-~i~~l~ 194 (291)
T 1h6t_A 151 -----VLSRLTKLDTLSLEDN-QISDIVP-L--AGLTKLQNLYLSKN-HISDLR 194 (291)
T ss_dssp -----GGGGCTTCSEEECCSS-CCCCCGG-G--TTCTTCCEEECCSS-CCCBCG
T ss_pred -----hhccCCCCCEEEccCC-ccccchh-h--cCCCccCEEECCCC-cCCCCh
Confidence 2334699999999987 6776655 3 68899999999987 566554
No 95
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.94 E-value=1.5e-10 Score=106.43 Aligned_cols=222 Identities=14% Similarity=0.058 Sum_probs=117.4
Q ss_pred CCCCcceeeecccccccccccccccc------------cccCCccEEEEccCccceeecCCCccccce--eccc-cCeEE
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKV------------DSFNELKTIKVESCDEIFAIGGEADVVTEG--IFAQ-ISCLS 72 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~------------~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~--~l~~-L~~L~ 72 (272)
.|++|++|++.+|+.+.+....+... ..+++|++|++++| .+..... ..+ .+++ |++|+
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~-----~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDL-----DRLAKARADDLETLK 144 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHH-----HHHHHHHGGGCCEEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHH-----HHHHHhccccCcEEE
Confidence 57899999999988765432111111 15789999999988 3332111 111 2455 99999
Q ss_pred ecCCCCccccccCccccccccccccccccccceeecceeeeccCCCCc-ccccccccCCCCCccEEEeccccceEeccCC
Q 045653 73 LGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDT-STTLFNDKVRLPKLEALELHEINVEKIWRSQ 151 (272)
Q Consensus 73 l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~ 151 (272)
+++|..+..-..... ...++.|+ .+++..|.-... ...+......+++|+.|++.++++..+....
T Consensus 145 L~~~~~~~~~~l~~~------------~~~~~~L~-~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~ 211 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSI------------VTHCRKIK-TLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD 211 (592)
T ss_dssp EESCEEEEHHHHHHH------------HHHCTTCS-EEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHH
T ss_pred CcCCCCcCHHHHHHH------------HhhCCCCC-EEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHH
Confidence 998864322100000 00134455 666665532110 0012222345788888888877554221122
Q ss_pred CCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCc----------------ceeeccCC-cccc-CC
Q 045653 152 VPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGL----------------LGIISEDT-AIQV-TP 213 (272)
Q Consensus 152 ~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l----------------~~~~~~~~-~~~~-~~ 213 (272)
++..+..+++|++|++.+|. +..+ + ..+..+++|++|++.++... +.+..... .... ..
T Consensus 212 l~~~~~~~~~L~~L~L~~~~-~~~l-~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~ 288 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFE-ILEL-V-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL 288 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCB-GGGG-H-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG
T ss_pred HHHHHhhCCCCcEEeccCcc-HHHH-H-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH
Confidence 22223457888888888854 3344 3 46777888888888753221 11000000 0000 01
Q ss_pred ccCCCccCeeecccccccccccCCCccccCCCcCEEeec
Q 045653 214 CFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEAT 252 (272)
Q Consensus 214 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~ 252 (272)
...+++|++|++++|. ++..........+++|++|++.
T Consensus 289 ~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp GGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred HhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc
Confidence 2235678888887775 4333221112567888888774
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.91 E-value=1.6e-08 Score=81.35 Aligned_cols=131 Identities=19% Similarity=0.224 Sum_probs=70.8
Q ss_pred CCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccccccccccccccccceeecceeeeccC
Q 045653 37 NELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLED 116 (272)
Q Consensus 37 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~ 116 (272)
++|+.|++.++ .+......... .+++|+.|+++++ .+..+.
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~~~~----~l~~L~~L~Ls~N-~i~~~~--------------------------------- 72 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPGAFS----PYKKLRRIDLSNN-QISELA--------------------------------- 72 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTSST----TCTTCCEEECCSS-CCCEEC---------------------------------
T ss_pred cCCCEEECCCC-cCCCcCHhHhh----CCCCCCEEECCCC-cCCCcC---------------------------------
Confidence 67888888776 34444332222 4678888888764 233221
Q ss_pred CCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653 117 KLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC 196 (272)
Q Consensus 117 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 196 (272)
+..+..+++|+.|+++++++..+.+. .+..+++|++|++.+ +.+..+ +...+..+++|+.|++.++
T Consensus 73 --------~~~~~~l~~L~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~-N~l~~~-~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 73 --------PDAFQGLRSLNSLVLYGNKITELPKS----LFEGLFSLQLLLLNA-NKINCL-RVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp --------TTTTTTCSSCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred --------HHHhhCCcCCCEEECCCCcCCccCHh----HccCCCCCCEEECCC-CCCCEe-CHHHcCCCCCCCEEECCCC
Confidence 12234556666666666655543222 244566666666666 344444 3345556666666666664
Q ss_pred CCcceeeccCCccccCCccCCCccCeeecccc
Q 045653 197 KGLLGIISEDTAIQVTPCFVFPRVSTLRLIDL 228 (272)
Q Consensus 197 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 228 (272)
.++.+... ....+++|+.|++.+.
T Consensus 139 -~l~~~~~~-------~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 139 -KLQTIAKG-------TFSPLRAIQTMHLAQN 162 (220)
T ss_dssp -CCSCCCTT-------TTTTCTTCCEEECCSS
T ss_pred -cCCEECHH-------HHhCCCCCCEEEeCCC
Confidence 34443311 1222466666666654
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.90 E-value=1.9e-08 Score=80.94 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=30.3
Q ss_pred ceeeecccccccccccccccccccCCccEEEEccCccceeecC-CCccccceeccccCeEEecCCCCcccc
Q 045653 13 ESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGG-EADVVTEGIFAQISCLSLGNLPQLTSF 82 (272)
Q Consensus 13 ~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~ 82 (272)
+++++++ .+++.+ +. ...+.+++|+++++ .+..... .... .+++|+.|+++++ +++.+
T Consensus 14 ~~l~~s~-n~l~~i---P~--~~~~~~~~L~L~~N-~l~~~~~~~~~~----~l~~L~~L~L~~N-~i~~i 72 (220)
T 2v70_A 14 TTVDCSN-QKLNKI---PE--HIPQYTAELRLNNN-EFTVLEATGIFK----KLPQLRKINFSNN-KITDI 72 (220)
T ss_dssp TEEECCS-SCCSSC---CS--CCCTTCSEEECCSS-CCCEECCCCCGG----GCTTCCEEECCSS-CCCEE
T ss_pred CEeEeCC-CCcccC---cc--CCCCCCCEEEcCCC-cCCccCchhhhc----cCCCCCEEECCCC-cCCEE
Confidence 4566655 334444 11 22456778888776 3443322 1111 4778888888764 34443
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.88 E-value=2.3e-09 Score=99.00 Aligned_cols=171 Identities=16% Similarity=0.220 Sum_probs=120.8
Q ss_pred cccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccccccccccccccccceeeccee
Q 045653 32 KVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYE 111 (272)
Q Consensus 32 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 111 (272)
....+++|+.|++.+|. +...+. .. .+++|+.|+|+++ .+..+++. . .++.|+ .+.
T Consensus 38 ~~~~L~~L~~L~l~~n~-i~~l~~--l~----~l~~L~~L~Ls~N-~l~~~~~l--~-------------~l~~L~-~L~ 93 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSD-IKSVQG--IQ----YLPNVTKLFLNGN-KLTDIKPL--T-------------NLKNLG-WLF 93 (605)
T ss_dssp CHHHHTTCCCCBCTTCC-CCCCTT--GG----GCTTCCEEECTTS-CCCCCGGG--G-------------GCTTCC-EEE
T ss_pred chhcCCCCCEEECcCCC-CCCChH--Hc----cCCCCCEEEeeCC-CCCCChhh--c-------------cCCCCC-EEE
Confidence 34568999999999884 333321 11 5899999999986 45554431 1 134555 666
Q ss_pred eeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEE
Q 045653 112 VNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHL 191 (272)
Q Consensus 112 i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 191 (272)
+..+.- . .+ ..+..+++|+.|+|.+|++..+ + .+..+++|+.|++.++ .+..+ ..+..+++|+.|
T Consensus 94 Ls~N~l-~---~l-~~l~~l~~L~~L~Ls~N~l~~l-~-----~l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L 158 (605)
T 1m9s_A 94 LDENKI-K---DL-SSLKDLKKLKSLSLEHNGISDI-N-----GLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTL 158 (605)
T ss_dssp CCSSCC-C---CC-TTSTTCTTCCEEECTTSCCCCC-G-----GGGGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEE
T ss_pred CcCCCC-C---CC-hhhccCCCCCEEEecCCCCCCC-c-----cccCCCccCEEECCCC-ccCCc---hhhcccCCCCEE
Confidence 666532 2 12 2467899999999999977763 1 2557899999999985 55665 457899999999
Q ss_pred EeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653 192 DICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 192 ~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 255 (272)
++++| .+..+.. +..+++|+.|+++++ .++.++. + ..+++|+.|++++|+
T Consensus 159 ~Ls~N-~l~~~~~---------l~~l~~L~~L~Ls~N-~i~~l~~-l--~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 159 SLEDN-QISDIVP---------LAGLTKLQNLYLSKN-HISDLRA-L--AGLKNLDVLELFSQE 208 (605)
T ss_dssp ECCSS-CCCCCGG---------GTTCTTCCEEECCSS-CCCBCGG-G--TTCTTCSEEECCSEE
T ss_pred ECcCC-cCCCchh---------hccCCCCCEEECcCC-CCCCChH-H--ccCCCCCEEEccCCc
Confidence 99987 4555442 334599999999987 6777643 3 678999999999874
No 99
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.87 E-value=1.2e-08 Score=78.39 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=26.5
Q ss_pred CCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccch---HHHhccccCcEEEeecC
Q 045653 131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSA---SMIRSVEQLQHLDICLC 196 (272)
Q Consensus 131 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~---~~~~~l~~L~~L~i~~c 196 (272)
+++|+.|++.+|++..+... ..+..+++|++|++.+++ +..+ +. ..+..+++|+.|++.+|
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~---~~l~~l~~L~~L~l~~N~-l~~~-~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTL---EPLKKLECLKSLDLFNCE-VTNL-NDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGG---GGGSSCSCCCEEECCSSG-GGTS-TTHHHHHHTTCSSCCEETTEET
T ss_pred CCCCCEEeccCCccCcchhH---HHHhcCCCCCEEEeeCCc-Ccch-HHHHHHHHHhCccCcEecCCCC
Confidence 45555555555544332110 123345555555555432 2332 21 23444555555555554
No 100
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.87 E-value=7.1e-09 Score=77.97 Aligned_cols=111 Identities=15% Similarity=0.197 Sum_probs=79.6
Q ss_pred ccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccC
Q 045653 127 DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISED 206 (272)
Q Consensus 127 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~ 206 (272)
.+..+++|+.|++.+|++..+ . .+..+++|++|++.++. +... .+.....+++|+.|+++++. ++.++...
T Consensus 37 ~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~ 107 (149)
T 2je0_A 37 LTDEFEELEFLSTINVGLTSI--A----NLPKLNKLKKLELSDNR-VSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIE 107 (149)
T ss_dssp CCTTCTTCCEEECTTSCCCCC--T----TCCCCTTCCEEECCSSC-CCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHG
T ss_pred HHhhcCCCcEEECcCCCCCCc--h----hhhcCCCCCEEECCCCc-ccch-HHHHhhhCCCCCEEECCCCc-CCChHHHH
Confidence 346789999999999977764 2 46679999999999854 5553 23456779999999999974 55442111
Q ss_pred CccccCCccCCCccCeeecccccccccccCC--CccccCCCcCEEeecC
Q 045653 207 TAIQVTPCFVFPRVSTLRLIDLPKLRFFYPG--MHTSEWPTLQSLEATG 253 (272)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~~~~L~~L~i~~ 253 (272)
. ...+++|+.|+++++ .++..+.. .....+++|++|++++
T Consensus 108 ~------~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 108 P------LKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp G------GGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred H------HhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 1 334599999999997 67776651 1226789999998764
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.86 E-value=1e-08 Score=81.56 Aligned_cols=111 Identities=21% Similarity=0.210 Sum_probs=64.1
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT 207 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 207 (272)
+..+++|+.|++.++++..+.+. .+..+++|++|++.++ .++.+ +...+..+++|++|+++++ .+..++. .
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~--~ 118 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNG----VFNKLTSLTYLNLSTN-QLQSL-PNGVFDKLTQLKELALNTN-QLQSLPD--G 118 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT--T
T ss_pred hcccccCcEEECCCCccCccChh----hcCCCCCcCEEECCCC-cCCcc-CHhHhcCccCCCEEEcCCC-cCcccCH--h
Confidence 34567777777777766543222 3445677777777764 44454 4344566777777777765 3444331 1
Q ss_pred ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCC
Q 045653 208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGC 254 (272)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c 254 (272)
....+++|+.|+++++ .++.++.... ..+++|++|++.++
T Consensus 119 -----~~~~l~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 119 -----VFDKLTQLKDLRLYQN-QLKSVPDGVF-DRLTSLQYIWLHDN 158 (208)
T ss_dssp -----TTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSC
T ss_pred -----HhccCCcCCEEECCCC-ccceeCHHHh-ccCCCccEEEecCC
Confidence 1223467777777664 5555554321 45677777777664
No 102
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.86 E-value=4.6e-08 Score=87.37 Aligned_cols=57 Identities=21% Similarity=0.159 Sum_probs=29.2
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC 196 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 196 (272)
+..+++|+.|++.+|++..+ +. ..++|++|++.++ .+..+ + .+..+++|+.|+++++
T Consensus 191 ~~~l~~L~~L~l~~N~l~~l-~~-------~~~~L~~L~l~~n-~l~~l-p--~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 191 LQNLPFLTAIYADNNSLKKL-PD-------LPLSLESIVAGNN-ILEEL-P--ELQNLPFLTTIYADNN 247 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSC-CC-------CCTTCCEEECCSS-CCSSC-C--CCTTCTTCCEEECCSS
T ss_pred ccCCCCCCEEECCCCcCCcC-CC-------CcCcccEEECcCC-cCCcc-c--ccCCCCCCCEEECCCC
Confidence 45667777777776654431 11 1235555555554 33333 3 1445555555555554
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.85 E-value=4.1e-08 Score=79.46 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=67.6
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT 207 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 207 (272)
+..+++|+.|++.++++..+.+. .+..+++|++|++.++ .++.+ +...+..+++|+.|+++++ ++..++ ..
T Consensus 60 ~~~l~~L~~L~L~~N~l~~i~~~----~~~~l~~L~~L~Ls~N-~l~~l-~~~~~~~l~~L~~L~Ls~N-~l~~lp--~~ 130 (229)
T 3e6j_A 60 FDSLINLKELYLGSNQLGALPVG----VFDSLTQLTVLDLGTN-QLTVL-PSAVFDRLVHLKELFMCCN-KLTELP--RG 130 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCSCC--TT
T ss_pred hhCccCCcEEECCCCCCCCcChh----hcccCCCcCEEECCCC-cCCcc-ChhHhCcchhhCeEeccCC-cccccC--cc
Confidence 35567777777777766553222 3456777777777763 55555 4444566777777777765 355443 22
Q ss_pred ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653 208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 255 (272)
. ..+++|+.|+++++ +++.++.... ..+++|+.|++.+.+
T Consensus 131 ~------~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 131 I------ERLTHLTHLALDQN-QLKSIPHGAF-DRLSSLTHAYLFGNP 170 (229)
T ss_dssp G------GGCTTCSEEECCSS-CCCCCCTTTT-TTCTTCCEEECTTSC
T ss_pred c------ccCCCCCEEECCCC-cCCccCHHHH-hCCCCCCEEEeeCCC
Confidence 2 23477777777764 6666654321 456777777776654
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.85 E-value=2.3e-08 Score=80.94 Aligned_cols=151 Identities=17% Similarity=0.121 Sum_probs=88.1
Q ss_pred CcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccc
Q 045653 11 LLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHS 90 (272)
Q Consensus 11 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 90 (272)
.-+.+++++ .+++.+ +. +..++|+.|+++++. +......... .+++|+.|+++++ .+..++.
T Consensus 20 s~~~v~c~~-~~l~~i---p~--~~~~~L~~L~Ls~n~-i~~~~~~~~~----~l~~L~~L~L~~N-~l~~i~~------ 81 (229)
T 3e6j_A 20 SGTTVDCRS-KRHASV---PA--GIPTNAQILYLHDNQ-ITKLEPGVFD----SLINLKELYLGSN-QLGALPV------ 81 (229)
T ss_dssp ETTEEECTT-SCCSSC---CS--CCCTTCSEEECCSSC-CCCCCTTTTT----TCTTCCEEECCSS-CCCCCCT------
T ss_pred eCCEeEccC-CCcCcc---CC--CCCCCCCEEEcCCCc-cCccCHHHhh----CccCCcEEECCCC-CCCCcCh------
Confidence 345666654 344444 21 234888999998873 4433332222 4788888888874 3333322
Q ss_pred cccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecC
Q 045653 91 ISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNC 170 (272)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c 170 (272)
..+..+++|+.|++++|++..+.+. .+..+++|++|++.+
T Consensus 82 -----------------------------------~~~~~l~~L~~L~Ls~N~l~~l~~~----~~~~l~~L~~L~Ls~- 121 (229)
T 3e6j_A 82 -----------------------------------GVFDSLTQLTVLDLGTNQLTVLPSA----VFDRLVHLKELFMCC- 121 (229)
T ss_dssp -----------------------------------TTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCS-
T ss_pred -----------------------------------hhcccCCCcCEEECCCCcCCccChh----HhCcchhhCeEeccC-
Confidence 1134567777777777766653322 344677777777776
Q ss_pred cCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccc
Q 045653 171 HKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLP 229 (272)
Q Consensus 171 ~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 229 (272)
+.++.+ |. .+..+++|+.|+++++ .+..++. . ....+++|+.|++.+.+
T Consensus 122 N~l~~l-p~-~~~~l~~L~~L~L~~N-~l~~~~~--~-----~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 122 NKLTEL-PR-GIERLTHLTHLALDQN-QLKSIPH--G-----AFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SCCCSC-CT-TGGGCTTCSEEECCSS-CCCCCCT--T-----TTTTCTTCCEEECTTSC
T ss_pred Cccccc-Cc-ccccCCCCCEEECCCC-cCCccCH--H-----HHhCCCCCCEEEeeCCC
Confidence 345555 42 3467777788877775 4554442 1 12234777777776653
No 105
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.85 E-value=1.5e-08 Score=90.52 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=35.9
Q ss_pred ccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653 127 DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC 196 (272)
Q Consensus 127 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 196 (272)
.+..+++|+.|++++|++..+ +. ..++|++|++.++ .++.+ + .+.++++|+.|++.++
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~l-p~-------~~~~L~~L~L~~n-~l~~l-~--~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKKL-PD-------LPPSLEFIAAGNN-QLEEL-P--ELQNLPFLTAIYADNN 205 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSCC-CC-------CCTTCCEEECCSS-CCSSC-C--CCTTCTTCCEEECCSS
T ss_pred ccCCCCCCCEEECCCCcCccc-CC-------CcccccEEECcCC-cCCcC-c--cccCCCCCCEEECCCC
Confidence 356777888888887765542 11 1346777777764 44444 3 3566777777777665
No 106
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.82 E-value=1.1e-07 Score=87.57 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=89.6
Q ss_pred ccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccC
Q 045653 127 DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISED 206 (272)
Q Consensus 127 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~ 206 (272)
.+..+++++.+++..+.+..+.+. .+..+++|+.|++.++.....+ .+..+..+++|+.|++++| +++.+++..
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~~~~----~~~~~~~L~~L~Ls~N~~~~~~-~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~ 513 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVAFNG----IFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQC-QLEQLSPTA 513 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTT----TTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTS-CCCEECTTT
T ss_pred cccccccccccccccccccccccc----ccccchhhhhhhhhhccccccc-CchhhhhccccCEEECCCC-ccCCcChHH
Confidence 346678889999988877764443 4557899999999988766655 4456788999999999998 577765321
Q ss_pred CccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCccccc
Q 045653 207 TAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGS 262 (272)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~ 262 (272)
+..+++|+.|+++++ +++.++...+ ..+++|+.|+++++ +++.+++
T Consensus 514 -------f~~l~~L~~L~Ls~N-~l~~l~~~~~-~~l~~L~~L~Ls~N-~l~~~~~ 559 (635)
T 4g8a_A 514 -------FNSLSSLQVLNMSHN-NFFSLDTFPY-KCLNSLQVLDYSLN-HIMTSKK 559 (635)
T ss_dssp -------TTTCTTCCEEECTTS-CCCBCCCGGG-TTCTTCCEEECTTS-CCCBCCS
T ss_pred -------HcCCCCCCEEECCCC-cCCCCChhHH-hCCCCCCEEECCCC-cCCCCCH
Confidence 334599999999986 7877766432 57899999999987 4555443
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.80 E-value=1.2e-07 Score=76.12 Aligned_cols=112 Identities=16% Similarity=0.282 Sum_probs=85.7
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT 207 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 207 (272)
+..+++|+.|++.++++..+.+. .+..+++|++|++.+ +.++.+ +...+..+++|+.|+++++ .+..+...
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~----~~~~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-- 123 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEG----AFEGASGVNEILLTS-NRLENV-QHKMFKGLESLKTLMLRSN-RITCVGND-- 123 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCS-SCCCCC-CGGGGTTCSSCCEEECTTS-CCCCBCTT--
T ss_pred hccCCCCCEEECCCCcCCEECHH----HhCCCCCCCEEECCC-CccCcc-CHhHhcCCcCCCEEECCCC-cCCeECHh--
Confidence 56789999999999988876544 466899999999998 456666 5566889999999999986 46555421
Q ss_pred ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653 208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 255 (272)
....+++|+.|+++++ +++.+....+ ..+++|++|++.+++
T Consensus 124 -----~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 124 -----SFIGLSSVRLLSLYDN-QITTVAPGAF-DTLHSLSTLNLLANP 164 (220)
T ss_dssp -----SSTTCTTCSEEECTTS-CCCCBCTTTT-TTCTTCCEEECCSCC
T ss_pred -----HcCCCccCCEEECCCC-cCCEECHHHh-cCCCCCCEEEecCcC
Confidence 1234599999999985 7777744322 578999999998875
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.77 E-value=6.6e-08 Score=83.62 Aligned_cols=162 Identities=17% Similarity=0.126 Sum_probs=74.2
Q ss_pred CCCCCCCcceeeeccccccccccccccccc-ccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653 5 PCDAFPLLESLTLHNLINLERICIDRLKVD-SFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC 83 (272)
Q Consensus 5 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 83 (272)
|....+.+++|+|++. +++.+.. .... .+++|+.|++.++ ++......... .+++|+.|++++. +++.++
T Consensus 34 P~~~~~~l~~L~Ls~N-~l~~l~~--~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~----~l~~L~~L~Ls~N-~l~~~~ 104 (361)
T 2xot_A 34 PQSLPSYTALLDLSHN-NLSRLRA--EWTPTRLTNLHSLLLSHN-HLNFISSEAFV----PVPNLRYLDLSSN-HLHTLD 104 (361)
T ss_dssp CSSCCTTCSEEECCSS-CCCEECT--TSSSSCCTTCCEEECCSS-CCCEECTTTTT----TCTTCCEEECCSS-CCCEEC
T ss_pred CccCCCCCCEEECCCC-CCCccCh--hhhhhcccccCEEECCCC-cCCccChhhcc----CCCCCCEEECCCC-cCCcCC
Confidence 4344455777777763 4444411 1122 4677777777766 34444332222 4677777777763 354443
Q ss_pred cCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcC
Q 045653 84 REVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLT 163 (272)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~ 163 (272)
...... ++.|+ .+++..+.-.. ..+..+..+++|+.|+|++|++..+...... .+..+++|+
T Consensus 105 ~~~~~~-------------l~~L~-~L~L~~N~i~~---~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~~~~l~~L~ 166 (361)
T 2xot_A 105 EFLFSD-------------LQALE-VLLLYNNHIVV---VDRNAFEDMAQLQKLYLSQNQISRFPVELIK-DGNKLPKLM 166 (361)
T ss_dssp TTTTTT-------------CTTCC-EEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-----CTTCC
T ss_pred HHHhCC-------------CcCCC-EEECCCCcccE---ECHHHhCCcccCCEEECCCCcCCeeCHHHhc-CcccCCcCC
Confidence 322111 22333 33333322111 1123344556666666666654442221100 012355666
Q ss_pred EEEEecCcCCccccchHHHhcccc--CcEEEeec
Q 045653 164 RLVVSNCHKLKYLFSASMIRSVEQ--LQHLDICL 195 (272)
Q Consensus 164 ~L~i~~c~~l~~l~~~~~~~~l~~--L~~L~i~~ 195 (272)
.|++.+ +.++.+ +...+..++. |+.|++.+
T Consensus 167 ~L~L~~-N~l~~l-~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 167 LLDLSS-NKLKKL-PLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp EEECCS-SCCCCC-CHHHHHHSCHHHHTTEECCS
T ss_pred EEECCC-CCCCcc-CHHHhhhccHhhcceEEecC
Confidence 666655 344444 4444455554 25555554
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.77 E-value=1.4e-07 Score=75.78 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=87.6
Q ss_pred ccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccC
Q 045653 127 DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISED 206 (272)
Q Consensus 127 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~ 206 (272)
.+..+++|+.|++.++++..+.+. .+..+++|++|++.+ +.++.+ +...+..+++|+.|++.++ .+..+...
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~~----~~~~l~~L~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~N-~l~~~~~~- 122 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAPD----AFQGLRSLNSLVLYG-NKITEL-PKSLFEGLFSLQLLLLNAN-KINCLRVD- 122 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTT----TTTTCSSCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTT-
T ss_pred HhhCCCCCCEEECCCCcCCCcCHH----HhhCCcCCCEEECCC-CcCCcc-CHhHccCCCCCCEEECCCC-CCCEeCHH-
Confidence 346789999999999988876444 466899999999998 466776 6666788999999999996 46555421
Q ss_pred CccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653 207 TAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 255 (272)
....+++|+.|+++++ .++.++...+ ..+++|++|++.+.+
T Consensus 123 ------~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 123 ------AFQDLHNLNLLSLYDN-KLQTIAKGTF-SPLRAIQTMHLAQNP 163 (220)
T ss_dssp ------TTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred ------HcCCCCCCCEEECCCC-cCCEECHHHH-hCCCCCCEEEeCCCC
Confidence 2334699999999986 7777776432 578999999998865
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.75 E-value=4.4e-10 Score=98.12 Aligned_cols=142 Identities=14% Similarity=0.082 Sum_probs=85.5
Q ss_pred ceeecceeeeccCCC-CcccccccccCCCCCccEEEeccccceEecc-CCCCCCCCCCCCcCEEEEecCcCCc-----cc
Q 045653 104 TAITCSYEVNLEDKL-DTSTTLFNDKVRLPKLEALELHEINVEKIWR-SQVPAKFPRFQSLTRLVVSNCHKLK-----YL 176 (272)
Q Consensus 104 ~~l~~~l~i~~~~~~-~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~-~~~~~~~~~l~~L~~L~i~~c~~l~-----~l 176 (272)
+.|+ .+.+..+.-. .....+...+..+++|+.|++.+|++..... ...+..+..+++|++|++.++. ++ .+
T Consensus 159 ~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l 236 (386)
T 2ca6_A 159 PPLR-SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSAL 236 (386)
T ss_dssp CCCC-EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHH
T ss_pred CCCc-EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHH
Confidence 4555 6666655432 1111222345678899999999996652100 0011134578999999999865 43 22
Q ss_pred cchHHHhccccCcEEEeecCCCcceeeccCCccccCCc--cCCCccCeeeccccccccc-----ccCCCccccCCCcCEE
Q 045653 177 FSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPC--FVFPRVSTLRLIDLPKLRF-----FYPGMHTSEWPTLQSL 249 (272)
Q Consensus 177 ~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~--~~l~~L~~L~l~~c~~l~~-----~~~~~~~~~~~~L~~L 249 (272)
+ ..+..+++|++|++++|. +.......-.. .+ ..+++|+.|+++++ .++. ++... ...+++|++|
T Consensus 237 -~-~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~---~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l-~~~l~~L~~L 308 (386)
T 2ca6_A 237 -A-IALKSWPNLRELGLNDCL-LSARGAAAVVD---AFSKLENIGLQTLRLQYN-EIELDAVRTLKTVI-DEKMPDLLFL 308 (386)
T ss_dssp -H-HHGGGCTTCCEEECTTCC-CCHHHHHHHHH---HHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHH-HHHCTTCCEE
T ss_pred -H-HHHccCCCcCEEECCCCC-CchhhHHHHHH---HHhhccCCCeEEEECcCC-cCCHHHHHHHHHHH-HhcCCCceEE
Confidence 2 356788999999999884 43331100000 01 12589999999987 5555 44322 1357999999
Q ss_pred eecCCC
Q 045653 250 EATGCD 255 (272)
Q Consensus 250 ~i~~c~ 255 (272)
++++|+
T Consensus 309 ~l~~N~ 314 (386)
T 2ca6_A 309 ELNGNR 314 (386)
T ss_dssp ECTTSB
T ss_pred EccCCc
Confidence 999885
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.74 E-value=1.2e-07 Score=86.97 Aligned_cols=189 Identities=14% Similarity=0.141 Sum_probs=123.5
Q ss_pred CcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccc
Q 045653 11 LLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHS 90 (272)
Q Consensus 11 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 90 (272)
+|++|++.++ +++.+ +.. .+++|+.|+++++ ++..++ . .+++|+.|+++++ .++.+|. ...
T Consensus 60 ~L~~L~Ls~n-~L~~l---p~~--l~~~L~~L~Ls~N-~l~~ip-~-------~l~~L~~L~Ls~N-~l~~ip~-l~~-- 120 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSL---PDN--LPPQITVLEITQN-ALISLP-E-------LPASLEYLDACDN-RLSTLPE-LPA-- 120 (571)
T ss_dssp TCSEEECCSS-CCSCC---CSC--CCTTCSEEECCSS-CCSCCC-C-------CCTTCCEEECCSS-CCSCCCC-CCT--
T ss_pred CccEEEeCCC-CCCcc---CHh--HcCCCCEEECcCC-CCcccc-c-------ccCCCCEEEccCC-CCCCcch-hhc--
Confidence 7889999885 45554 222 2588999999998 455444 1 3789999999986 5666654 111
Q ss_pred cccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecC
Q 045653 91 ISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNC 170 (272)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c 170 (272)
.|+ .+.+..+.- . .++. .+++|+.|++++|.+..+ |. .+++|++|++.++
T Consensus 121 --------------~L~-~L~Ls~N~l-~---~lp~---~l~~L~~L~Ls~N~l~~l-----p~---~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 121 --------------SLK-HLDVDNNQL-T---MLPE---LPALLEYINADNNQLTML-----PE---LPTSLEVLSVRNN 170 (571)
T ss_dssp --------------TCC-EEECCSSCC-S---CCCC---CCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSS
T ss_pred --------------CCC-EEECCCCcC-C---CCCC---cCccccEEeCCCCccCcC-----CC---cCCCcCEEECCCC
Confidence 222 555554432 2 2333 578999999999977652 21 4689999999985
Q ss_pred cCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEe
Q 045653 171 HKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLE 250 (272)
Q Consensus 171 ~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~ 250 (272)
.++.+ |. +. ++|+.|+++++ .++.++. .... -....+.|+.|+++++ .++.++... ..+++|+.|+
T Consensus 171 -~L~~l-p~--l~--~~L~~L~Ls~N-~L~~lp~---~~~~-L~~~~~~L~~L~Ls~N-~l~~lp~~l--~~l~~L~~L~ 236 (571)
T 3cvr_A 171 -QLTFL-PE--LP--ESLEALDVSTN-LLESLPA---VPVR-NHHSEETEIFFRCREN-RITHIPENI--LSLDPTCTII 236 (571)
T ss_dssp -CCSCC-CC--CC--TTCCEEECCSS-CCSSCCC---CC---------CCEEEECCSS-CCCCCCGGG--GGSCTTEEEE
T ss_pred -CCCCc-ch--hh--CCCCEEECcCC-CCCchhh---HHHh-hhcccccceEEecCCC-cceecCHHH--hcCCCCCEEE
Confidence 46665 53 33 89999999987 5665552 1100 0011133499999886 788888766 5699999999
Q ss_pred ecCCCCCccccc
Q 045653 251 ATGCDNLKIFGS 262 (272)
Q Consensus 251 i~~c~~l~~l~~ 262 (272)
+++++--..+|.
T Consensus 237 L~~N~l~~~~p~ 248 (571)
T 3cvr_A 237 LEDNPLSSRIRE 248 (571)
T ss_dssp CCSSSCCHHHHH
T ss_pred eeCCcCCCcCHH
Confidence 999864333443
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.74 E-value=7.5e-08 Score=79.63 Aligned_cols=145 Identities=12% Similarity=0.184 Sum_probs=103.1
Q ss_pred CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK 87 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 87 (272)
.+++|++|+++++ +++.+ +....+++|+.|+++++ .+...+. .. .+++|+.|+++++ +++.++....
T Consensus 39 ~l~~L~~L~l~~n-~i~~l----~~l~~l~~L~~L~L~~N-~i~~~~~--l~----~l~~L~~L~L~~N-~l~~l~~~~~ 105 (263)
T 1xeu_A 39 ELSGVQNFNGDNS-NIQSL----AGMQFFTNLKELHLSHN-QISDLSP--LK----DLTKLEELSVNRN-RLKNLNGIPS 105 (263)
T ss_dssp HHTTCSEEECTTS-CCCCC----TTGGGCTTCCEEECCSS-CCCCCGG--GT----TCSSCCEEECCSS-CCSCCTTCCC
T ss_pred hcCcCcEEECcCC-Ccccc----hHHhhCCCCCEEECCCC-ccCCChh--hc----cCCCCCEEECCCC-ccCCcCcccc
Confidence 4688999999986 55555 24567899999999998 4444332 11 5899999999986 5555543221
Q ss_pred ccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEE
Q 045653 88 RHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVV 167 (272)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i 167 (272)
+.|+ .+++..+.- . .+ ..+..+++|+.|++++|++..+ + .+..+++|++|++
T Consensus 106 ----------------~~L~-~L~L~~N~l-~---~~-~~l~~l~~L~~L~Ls~N~i~~~-~-----~l~~l~~L~~L~L 157 (263)
T 1xeu_A 106 ----------------ACLS-RLFLDNNEL-R---DT-DSLIHLKNLEILSIRNNKLKSI-V-----MLGFLSKLEVLDL 157 (263)
T ss_dssp ----------------SSCC-EEECCSSCC-S---BS-GGGTTCTTCCEEECTTSCCCBC-G-----GGGGCTTCCEEEC
T ss_pred ----------------Cccc-EEEccCCcc-C---CC-hhhcCcccccEEECCCCcCCCC-h-----HHccCCCCCEEEC
Confidence 2333 555665532 2 12 2467899999999999987764 1 2457899999999
Q ss_pred ecCcCCccccchHHHhccccCcEEEeecCC
Q 045653 168 SNCHKLKYLFSASMIRSVEQLQHLDICLCK 197 (272)
Q Consensus 168 ~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 197 (272)
+++ .+.++ ..+..+++|+.|++.+++
T Consensus 158 ~~N-~i~~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 158 HGN-EITNT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTS-CCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred CCC-cCcch---HHhccCCCCCEEeCCCCc
Confidence 984 55665 457889999999999863
No 113
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.73 E-value=5e-09 Score=80.94 Aligned_cols=92 Identities=15% Similarity=0.216 Sum_probs=57.2
Q ss_pred CCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhcc----ccCcEEEeecCCCcceeeccCC
Q 045653 132 PKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSV----EQLQHLDICLCKGLLGIISEDT 207 (272)
Q Consensus 132 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l----~~L~~L~i~~c~~l~~~~~~~~ 207 (272)
.+|+.|++++|.+...... .+..+++|++|++++|..+++- .-..+..+ ++|++|++++|.++++....
T Consensus 61 ~~L~~LDLs~~~Itd~GL~----~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-- 133 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD----HMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGII-- 133 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG----GGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH--
T ss_pred ceEeEEeCcCCCccHHHHH----HhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHH--
Confidence 3678888888754432111 1346788888888888887775 33344442 46888888888777654311
Q ss_pred ccccCCccCCCccCeeeccccccccccc
Q 045653 208 AIQVTPCFVFPRVSTLRLIDLPKLRFFY 235 (272)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 235 (272)
+ +..+++|++|++++|+++++..
T Consensus 134 --~---L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 134 --A---LHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp --H---GGGCTTCCEEEEESCTTCCCHH
T ss_pred --H---HhcCCCCCEEECCCCCCCCchH
Confidence 1 1224778888888777777643
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.68 E-value=2.1e-08 Score=75.32 Aligned_cols=15 Identities=33% Similarity=0.804 Sum_probs=7.1
Q ss_pred HhccccCcEEEeecC
Q 045653 182 IRSVEQLQHLDICLC 196 (272)
Q Consensus 182 ~~~l~~L~~L~i~~c 196 (272)
+..+++|++|+++++
T Consensus 109 ~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 109 LKKLENLKSLDLFNC 123 (149)
T ss_dssp GGGCTTCCEEECTTC
T ss_pred HhhCCCCCEEeCcCC
Confidence 344444555555443
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.68 E-value=2.6e-07 Score=79.85 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=11.5
Q ss_pred ccccCeEEecCCCCcccccc
Q 045653 65 FAQISCLSLGNLPQLTSFCR 84 (272)
Q Consensus 65 l~~L~~L~l~~c~~l~~~~~ 84 (272)
.+.++.|++++. +++.++.
T Consensus 38 ~~~l~~L~Ls~N-~l~~l~~ 56 (361)
T 2xot_A 38 PSYTALLDLSHN-NLSRLRA 56 (361)
T ss_dssp CTTCSEEECCSS-CCCEECT
T ss_pred CCCCCEEECCCC-CCCccCh
Confidence 456778888764 4554443
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.66 E-value=2.8e-09 Score=92.97 Aligned_cols=222 Identities=11% Similarity=0.043 Sum_probs=114.2
Q ss_pred CCCcceeeecccccccccccc--cccccccCCccEEEEccCc--cceeecCCCc-cc-cce-eccccCeEEecCCCCccc
Q 045653 9 FPLLESLTLHNLINLERICID--RLKVDSFNELKTIKVESCD--EIFAIGGEAD-VV-TEG-IFAQISCLSLGNLPQLTS 81 (272)
Q Consensus 9 ~~~L~~L~L~~~~~l~~~~~~--~~~~~~~~~L~~L~l~~c~--~l~~~~~~~~-~~-~~~-~l~~L~~L~l~~c~~l~~ 81 (272)
+++|++|+|+++. +...... ......+++|++|++++|. .+....+... .. ..+ .+++|+.|+++++. +..
T Consensus 31 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~ 108 (386)
T 2ca6_A 31 DDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGP 108 (386)
T ss_dssp CSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCT
T ss_pred CCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CCH
Confidence 5678888888762 3322110 1123457888888888872 2221100000 00 001 46788888888753 222
Q ss_pred -----cccCccccccccccccccccccceeecceeeeccCCCCc-ccccccccCCC---------CCccEEEeccccceE
Q 045653 82 -----FCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDT-STTLFNDKVRL---------PKLEALELHEINVEK 146 (272)
Q Consensus 82 -----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~-~~~~~~~~~~l---------~~L~~L~L~~~~l~~ 146 (272)
++... ...+.|+ .+.+..|.-... ...+...+..+ ++|+.|++.+|++..
T Consensus 109 ~~~~~l~~~l--------------~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 109 TAQEPLIDFL--------------SKHTPLE-HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTHHHHHHHH--------------HHCTTCC-EEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred HHHHHHHHHH--------------HhCCCCC-EEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 11110 1123444 555555442110 01122223333 788888888885542
Q ss_pred eccCCCCCCCCCCCCcCEEEEecCcCCcccc----chHHHhccccCcEEEeecCCCcc-----eeeccCCccccCCccCC
Q 045653 147 IWRSQVPAKFPRFQSLTRLVVSNCHKLKYLF----SASMIRSVEQLQHLDICLCKGLL-----GIISEDTAIQVTPCFVF 217 (272)
Q Consensus 147 i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~----~~~~~~~l~~L~~L~i~~c~~l~-----~~~~~~~~~~~~~~~~l 217 (272)
.....+...+..+++|++|++.+| .+.+.. .+..+..+++|+.|++++|. +. .++ .. +..+
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~--~~------l~~~ 243 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALA--IA------LKSW 243 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHH--HH------GGGC
T ss_pred HHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHH--HH------HccC
Confidence 000000012335678888888886 344210 11145678888888888874 42 111 11 2334
Q ss_pred CccCeeecccccccccc-----cCCCccccCCCcCEEeecCCCCCcc
Q 045653 218 PRVSTLRLIDLPKLRFF-----YPGMHTSEWPTLQSLEATGCDNLKI 259 (272)
Q Consensus 218 ~~L~~L~l~~c~~l~~~-----~~~~~~~~~~~L~~L~i~~c~~l~~ 259 (272)
++|+.|++++|. ++.. +.......+++|++|++++|. ++.
T Consensus 244 ~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~ 288 (386)
T 2ca6_A 244 PNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IEL 288 (386)
T ss_dssp TTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBH
T ss_pred CCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCH
Confidence 889999998873 5443 121100237889999999884 443
No 117
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.64 E-value=8.9e-08 Score=74.09 Aligned_cols=109 Identities=16% Similarity=0.247 Sum_probs=76.9
Q ss_pred CCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccc
Q 045653 131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQ 210 (272)
Q Consensus 131 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 210 (272)
.++|+.|++++|++..+ . .+..+++|++|++.++ .++.+ +...+..+++|+.|+++++ .+..++...
T Consensus 41 ~~~L~~L~Ls~N~l~~~--~----~l~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~i~~~~~~~---- 107 (176)
T 1a9n_A 41 LDQFDAIDFSDNEIRKL--D----GFPLLRRLKTLLVNNN-RICRI-GEGLDQALPDLTELILTNN-SLVELGDLD---- 107 (176)
T ss_dssp TTCCSEEECCSSCCCEE--C----CCCCCSSCCEEECCSS-CCCEE-CSCHHHHCTTCCEEECCSC-CCCCGGGGG----
T ss_pred CCCCCEEECCCCCCCcc--c----ccccCCCCCEEECCCC-ccccc-CcchhhcCCCCCEEECCCC-cCCcchhhH----
Confidence 35899999999977774 2 3557899999999884 56666 5455688999999999986 455444211
Q ss_pred cCCccCCCccCeeecccccccccccCCC--ccccCCCcCEEeecCCC
Q 045653 211 VTPCFVFPRVSTLRLIDLPKLRFFYPGM--HTSEWPTLQSLEATGCD 255 (272)
Q Consensus 211 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~~~~~L~~L~i~~c~ 255 (272)
....+++|+.|+++++ .++.++... ....++.|+.|++++++
T Consensus 108 --~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 108 --PLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp --GGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred --hhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 1334588999999886 555665530 12578899999888765
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.62 E-value=1.1e-06 Score=74.97 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=63.6
Q ss_pred CCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCc-EEEeecCCCcceeeccCCcc
Q 045653 131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQ-HLDICLCKGLLGIISEDTAI 209 (272)
Q Consensus 131 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~-~L~i~~c~~l~~~~~~~~~~ 209 (272)
+++|+.+++.++++..|... .|..+++|+++.+.+ .++.+ +...+.++++|+ .+++.+ +++.+. ...
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~--ni~~I-~~~aF~~~~~L~~~l~l~~--~l~~I~--~~a- 292 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDF----TFAQKKYLLKIKLPH--NLKTI-GQRVFSNCGRLAGTLELPA--SVTAIE--FGA- 292 (329)
T ss_dssp CTTCCEEECTTBCCCEECTT----TTTTCTTCCEEECCT--TCCEE-CTTTTTTCTTCCEEEEECT--TCCEEC--TTT-
T ss_pred cCCCeEEECCCCCcceecHh----hhhCCCCCCEEECCc--cccee-hHHHhhCChhccEEEEEcc--cceEEc--hhh-
Confidence 56777777777766665444 456677777777765 26665 556677777777 777776 555554 211
Q ss_pred ccCCccCCCccCeeecccccccccccCCCccccCCCcCEEe
Q 045653 210 QVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLE 250 (272)
Q Consensus 210 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~ 250 (272)
...+++|+.+.+.+ .+++.++...+ .++++|+.+.
T Consensus 293 ----F~~c~~L~~l~l~~-n~i~~I~~~aF-~~~~~L~~ly 327 (329)
T 3sb4_A 293 ----FMGCDNLRYVLATG-DKITTLGDELF-GNGVPSKLIY 327 (329)
T ss_dssp ----TTTCTTEEEEEECS-SCCCEECTTTT-CTTCCCCEEE
T ss_pred ----hhCCccCCEEEeCC-CccCccchhhh-cCCcchhhhc
Confidence 22237777777654 36666665432 4666666654
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.60 E-value=4.4e-09 Score=91.07 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=55.0
Q ss_pred CccEEEeccccceEeccCCCCCCCCCC-CCcCEEEEecCcCCccccc---hHHHhc-cccCcEEEeecCCCcceeeccCC
Q 045653 133 KLEALELHEINVEKIWRSQVPAKFPRF-QSLTRLVVSNCHKLKYLFS---ASMIRS-VEQLQHLDICLCKGLLGIISEDT 207 (272)
Q Consensus 133 ~L~~L~L~~~~l~~i~~~~~~~~~~~l-~~L~~L~i~~c~~l~~l~~---~~~~~~-l~~L~~L~i~~c~~l~~~~~~~~ 207 (272)
+|+.|++++|++.......+...+..+ ++|++|++.++. +.+... ...+.. .++|++|+++++ .+.......-
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l 245 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENL 245 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHH
Confidence 666666666654432111100011223 367777776643 444100 012222 346777777765 2433221000
Q ss_pred ccccCCccCCCccCeeeccccc-------ccccccCCCccccCCCcCEEeecCCC
Q 045653 208 AIQVTPCFVFPRVSTLRLIDLP-------KLRFFYPGMHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~c~-------~l~~~~~~~~~~~~~~L~~L~i~~c~ 255 (272)
. .....+++|+.|+++++. .+..+.... ..++.|+.|++++++
T Consensus 246 ~---~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~--~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 246 K---LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF--PNIQKIILVDKNGKE 295 (362)
T ss_dssp H---HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS--TTCCEEEEECTTSCB
T ss_pred H---HHHhcCCCccEEEeccCCccccCHHHHHHHHHHh--ccCCceEEEecCCCc
Confidence 0 112334778888887764 122333333 456677777777664
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.58 E-value=4.4e-09 Score=91.04 Aligned_cols=226 Identities=13% Similarity=0.003 Sum_probs=121.7
Q ss_pred CCcceeeeccccccccccccc--ccccccC-CccEEEEccCccceeecCCCccccce-e-ccccCeEEecCCCCcccccc
Q 045653 10 PLLESLTLHNLINLERICIDR--LKVDSFN-ELKTIKVESCDEIFAIGGEADVVTEG-I-FAQISCLSLGNLPQLTSFCR 84 (272)
Q Consensus 10 ~~L~~L~L~~~~~l~~~~~~~--~~~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~~~-~-l~~L~~L~l~~c~~l~~~~~ 84 (272)
.+|++|+++++. +++..... .....++ +|++|++++| .+.......... -+ . +++|++|+++++. +.....
T Consensus 22 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~-l~~~~~ 97 (362)
T 3goz_A 22 HGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQ-ILAAIPANVTSLNLSGNF-LSYKSS 97 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHH-HHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred CCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHH-HHhccCCCccEEECcCCc-CChHHH
Confidence 459999999865 44441100 2233466 8999999998 444322211110 00 1 2899999999874 443221
Q ss_pred Ccccccccccccccccccc-ceeecceeeeccCCCCccc-ccccccCCC-CCccEEEeccccceEeccCCCCCCCCCCC-
Q 045653 85 EVKRHSISSNTKDSQDQSM-TAITCSYEVNLEDKLDTST-TLFNDKVRL-PKLEALELHEINVEKIWRSQVPAKFPRFQ- 160 (272)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~-~~l~~~l~i~~~~~~~~~~-~~~~~~~~l-~~L~~L~L~~~~l~~i~~~~~~~~~~~l~- 160 (272)
...... .... +.|+ .+++..+.-..... .+...+..+ ++|+.|++++|++.......++..+..++
T Consensus 98 ~~l~~~---------l~~~~~~L~-~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 167 (362)
T 3goz_A 98 DELVKT---------LAAIPFTIT-VLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA 167 (362)
T ss_dssp HHHHHH---------HHTSCTTCC-EEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT
T ss_pred HHHHHH---------HHhCCCCcc-EEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCc
Confidence 100000 0001 3444 66666554221111 122223443 59999999999666322111111122344
Q ss_pred CcCEEEEecCcCCccccch---HHHhcc-ccCcEEEeecCCCcceeeccCCccccCCccC-CCccCeeeccccccccccc
Q 045653 161 SLTRLVVSNCHKLKYLFSA---SMIRSV-EQLQHLDICLCKGLLGIISEDTAIQVTPCFV-FPRVSTLRLIDLPKLRFFY 235 (272)
Q Consensus 161 ~L~~L~i~~c~~l~~l~~~---~~~~~l-~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~-l~~L~~L~l~~c~~l~~~~ 235 (272)
+|++|++.+| .+++..+. ..+... ++|++|++++|. +....... .. ..... .++|+.|+++++ .+++..
T Consensus 168 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~-l~--~~l~~~~~~L~~L~Ls~N-~l~~~~ 241 (362)
T 3goz_A 168 NVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAE-LA--YIFSSIPNHVVSLNLCLN-CLHGPS 241 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHH-HH--HHHHHSCTTCCEEECCSS-CCCCCC
T ss_pred cccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHH-HH--HHHhcCCCCceEEECcCC-CCCcHH
Confidence 9999999986 45555221 133445 599999999874 44321100 00 00111 258999999986 565543
Q ss_pred CC---CccccCCCcCEEeecCCC
Q 045653 236 PG---MHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 236 ~~---~~~~~~~~L~~L~i~~c~ 255 (272)
.. .....++.|++|++++|.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHhcCCCccEEEeccCC
Confidence 31 112567889999999885
No 121
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.56 E-value=5.8e-08 Score=74.94 Aligned_cols=94 Identities=6% Similarity=0.053 Sum_probs=69.8
Q ss_pred CCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCcc-CCCccCeeecccccccccccCC
Q 045653 159 FQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCF-VFPRVSTLRLIDLPKLRFFYPG 237 (272)
Q Consensus 159 l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~~~~~ 237 (272)
-.+|++|++++|. +++. ....+..+++|++|++++|..+++... .+..... ..++|++|++++|.++++-...
T Consensus 60 ~~~L~~LDLs~~~-Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL----~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 60 KYKIQAIDATDSC-IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCL----ERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCCEEEEEEESCC-CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHH----HHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred CceEeEEeCcCCC-ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHH----HHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 3579999999997 7776 445567899999999999987765431 1110000 0157999999999999887664
Q ss_pred CccccCCCcCEEeecCCCCCcc
Q 045653 238 MHTSEWPTLQSLEATGCDNLKI 259 (272)
Q Consensus 238 ~~~~~~~~L~~L~i~~c~~l~~ 259 (272)
.. ..+++|++|++++|++++.
T Consensus 134 ~L-~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 AL-HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HG-GGCTTCCEEEEESCTTCCC
T ss_pred HH-hcCCCCCEEECCCCCCCCc
Confidence 44 4689999999999998875
No 122
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.55 E-value=1.1e-09 Score=97.68 Aligned_cols=41 Identities=17% Similarity=0.012 Sum_probs=24.3
Q ss_pred CCccCeeecccccccccccCCC----ccccCCCcCEEeecCCCCCcc
Q 045653 217 FPRVSTLRLIDLPKLRFFYPGM----HTSEWPTLQSLEATGCDNLKI 259 (272)
Q Consensus 217 l~~L~~L~l~~c~~l~~~~~~~----~~~~~~~L~~L~i~~c~~l~~ 259 (272)
+++|++|+++++ .+++..... ....++.|++|++++| +++.
T Consensus 226 ~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~ 270 (461)
T 1z7x_W 226 KASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITA 270 (461)
T ss_dssp CTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCH
T ss_pred CCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCH
Confidence 477777777776 444432110 1124678888888887 4554
No 123
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.51 E-value=3.3e-09 Score=94.49 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=36.4
Q ss_pred CCCCcceeeecccccccccccccccccccC----CccEEEEccCccceeecCCCccccce-eccccCeEEecCCC
Q 045653 8 AFPLLESLTLHNLINLERICIDRLKVDSFN----ELKTIKVESCDEIFAIGGEADVVTEG-IFAQISCLSLGNLP 77 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~----~L~~L~l~~c~~l~~~~~~~~~~~~~-~l~~L~~L~l~~c~ 77 (272)
.+++|++|+++++. +.+... ......++ +|++|++++|. +...+.... ...+ .+++|++|+++++.
T Consensus 54 ~~~~L~~L~Ls~n~-l~~~~~-~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l-~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 54 VNPALAELNLRSNE-LGDVGV-HCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVL-SSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp TCTTCCEEECTTCC-CHHHHH-HHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHH-HHHTTSCTTCCEEECCSSB
T ss_pred hCCCcCEEeCCCCc-CChHHH-HHHHHHHhhCCCceeEEEccCCC-CCHHHHHHH-HHHHccCCceeEEECCCCc
Confidence 35889999998854 333211 01111233 69999999884 332110000 0111 57888888888765
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.45 E-value=8.6e-07 Score=68.44 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=73.5
Q ss_pred CCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccc
Q 045653 131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQ 210 (272)
Q Consensus 131 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 210 (272)
.++|+.|++.++++..+.+. .+..+++|++|++.++ .++.+ +...+..+++|+.|+++++ .++.++..
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~~----- 94 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQN-QIQSL-PDGVFDKLTKLTILYLHEN-KLQSLPNG----- 94 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTT-----
T ss_pred CCCCcEEEeCCCcccEeCHH----HhcCcccccEEECCCC-cceEe-ChhHccCCCccCEEECCCC-CccccCHH-----
Confidence 36888888888876653322 3456788888888874 56665 5455677888888888876 45544411
Q ss_pred cCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653 211 VTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 211 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 255 (272)
....+++|+.|+++++ .++.++.... ..+++|++|++.+++
T Consensus 95 --~~~~l~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 95 --VFDKLTQLKELALDTN-QLKSVPDGIF-DRLTSLQKIWLHTNP 135 (177)
T ss_dssp --TTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred --HhhCCcccCEEECcCC-cceEeCHHHh-cCCcccCEEEecCCC
Confidence 1223588888888875 6776665431 467888888888775
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.41 E-value=8e-07 Score=68.64 Aligned_cols=62 Identities=23% Similarity=0.209 Sum_probs=32.8
Q ss_pred CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccch-HHHhccccCcEEEeecC
Q 045653 129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSA-SMIRSVEQLQHLDICLC 196 (272)
Q Consensus 129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~-~~~~~l~~L~~L~i~~c 196 (272)
..+++|+.|++++|++..+.+. .+..+++|++|++.++ .+..+ +. ..+..+++|+.|++.++
T Consensus 61 ~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N-~i~~~-~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 61 PLLRRLKTLLVNNNRICRIGEG----LDQALPDLTELILTNN-SLVEL-GDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp CCCSSCCEEECCSSCCCEECSC----HHHHCTTCCEEECCSC-CCCCG-GGGGGGGGCTTCCEEECCSS
T ss_pred ccCCCCCEEECCCCcccccCcc----hhhcCCCCCEEECCCC-cCCcc-hhhHhhhcCCCCCEEEecCC
Confidence 3456666666666655543211 1234566666666653 33444 21 23455666666666665
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=2.4e-06 Score=72.76 Aligned_cols=90 Identities=19% Similarity=0.167 Sum_probs=59.5
Q ss_pred CCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccC-eeecccccccccccCC
Q 045653 159 FQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVS-TLRLIDLPKLRFFYPG 237 (272)
Q Consensus 159 l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~ 237 (272)
+++|+++++.+ .+++.+ +...+.++++|+++++.+ +++.+. ... ...+++|+ .+.+.+ +++.+...
T Consensus 225 ~~~L~~l~L~~-n~i~~I-~~~aF~~~~~L~~l~l~~--ni~~I~--~~a-----F~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISK-TNATTI-PDFTFAQKKYLLKIKLPH--NLKTIG--QRV-----FSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp CTTCCEEECTT-BCCCEE-CTTTTTTCTTCCEEECCT--TCCEEC--TTT-----TTTCTTCCEEEEECT--TCCEECTT
T ss_pred cCCCeEEECCC-CCccee-cHhhhhCCCCCCEEECCc--ccceeh--HHH-----hhCChhccEEEEEcc--cceEEchh
Confidence 56777777775 235666 656677788888888876 365554 222 22347888 888876 77777765
Q ss_pred CccccCCCcCEEeecCCCCCcccccc
Q 045653 238 MHTSEWPTLQSLEATGCDNLKIFGSE 263 (272)
Q Consensus 238 ~~~~~~~~L~~L~i~~c~~l~~l~~~ 263 (272)
.+ .+|++|+.+++.+. +++.++..
T Consensus 292 aF-~~c~~L~~l~l~~n-~i~~I~~~ 315 (329)
T 3sb4_A 292 AF-MGCDNLRYVLATGD-KITTLGDE 315 (329)
T ss_dssp TT-TTCTTEEEEEECSS-CCCEECTT
T ss_pred hh-hCCccCCEEEeCCC-ccCccchh
Confidence 43 58888999987543 46666543
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.38 E-value=2.9e-06 Score=66.64 Aligned_cols=124 Identities=13% Similarity=0.179 Sum_probs=80.6
Q ss_pred ceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccccc
Q 045653 13 ESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSIS 92 (272)
Q Consensus 13 ~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 92 (272)
+.+++++ .+++.+ +. +..++|++|++.++ .+...+. ... .+++|+.|++++. .++.++.
T Consensus 13 ~~l~~~~-~~l~~i---p~--~~~~~l~~L~L~~n-~i~~ip~-~~~----~l~~L~~L~Ls~N-~i~~i~~-------- 71 (193)
T 2wfh_A 13 TVVRCSN-KGLKVL---PK--GIPRDVTELYLDGN-QFTLVPK-ELS----NYKHLTLIDLSNN-RISTLSN-------- 71 (193)
T ss_dssp TEEECTT-SCCSSC---CS--CCCTTCCEEECCSS-CCCSCCG-GGG----GCTTCCEEECCSS-CCCCCCT--------
T ss_pred CEEEcCC-CCCCcC---CC--CCCCCCCEEECCCC-cCchhHH-Hhh----cccCCCEEECCCC-cCCEeCH--------
Confidence 4566655 344444 11 23578999999987 3443321 111 5789999999874 3333221
Q ss_pred cccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcC
Q 045653 93 SNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHK 172 (272)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~ 172 (272)
..+..+++|+.|+++++++..+.+. .+..+++|++|++.+ +.
T Consensus 72 ---------------------------------~~f~~l~~L~~L~Ls~N~l~~i~~~----~f~~l~~L~~L~L~~-N~ 113 (193)
T 2wfh_A 72 ---------------------------------QSFSNMTQLLTLILSYNRLRCIPPR----TFDGLKSLRLLSLHG-ND 113 (193)
T ss_dssp ---------------------------------TTTTTCTTCCEEECCSSCCCBCCTT----TTTTCTTCCEEECCS-SC
T ss_pred ---------------------------------hHccCCCCCCEEECCCCccCEeCHH----HhCCCCCCCEEECCC-CC
Confidence 2245678888999988877765433 355788899998888 45
Q ss_pred CccccchHHHhccccCcEEEeecC
Q 045653 173 LKYLFSASMIRSVEQLQHLDICLC 196 (272)
Q Consensus 173 l~~l~~~~~~~~l~~L~~L~i~~c 196 (272)
++.+ +...+..+++|+.|++.+.
T Consensus 114 l~~~-~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 114 ISVV-PEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCBC-CTTTTTTCTTCCEEECCSS
T ss_pred CCee-ChhhhhcCccccEEEeCCC
Confidence 6666 5556777888888888875
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.36 E-value=1.4e-06 Score=68.40 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=50.3
Q ss_pred CCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCcccc
Q 045653 132 PKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQV 211 (272)
Q Consensus 132 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 211 (272)
++|+.|++.++++..+. ..+..+++|++|++.+ +.++.+ +...+.++++|+.|+++++ .++.+...
T Consensus 31 ~~l~~L~L~~n~i~~ip-----~~~~~l~~L~~L~Ls~-N~i~~i-~~~~f~~l~~L~~L~Ls~N-~l~~i~~~------ 96 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-----KELSNYKHLTLIDLSN-NRISTL-SNQSFSNMTQLLTLILSYN-RLRCIPPR------ 96 (193)
T ss_dssp TTCCEEECCSSCCCSCC-----GGGGGCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSS-CCCBCCTT------
T ss_pred CCCCEEECCCCcCchhH-----HHhhcccCCCEEECCC-CcCCEe-CHhHccCCCCCCEEECCCC-ccCEeCHH------
Confidence 45556666555444321 1233455566666555 334444 3334455556666666554 24333311
Q ss_pred CCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCC
Q 045653 212 TPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGC 254 (272)
Q Consensus 212 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c 254 (272)
....+++|+.|++++. .++.++...+ ..+++|++|++.+.
T Consensus 97 -~f~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 97 -TFDGLKSLRLLSLHGN-DISVVPEGAF-NDLSALSHLAIGAN 136 (193)
T ss_dssp -TTTTCTTCCEEECCSS-CCCBCCTTTT-TTCTTCCEEECCSS
T ss_pred -HhCCCCCCCEEECCCC-CCCeeChhhh-hcCccccEEEeCCC
Confidence 1222355666666553 4544444321 34555666655543
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.35 E-value=5e-06 Score=65.10 Aligned_cols=126 Identities=16% Similarity=0.161 Sum_probs=80.7
Q ss_pred ceeeecccccccccccccccccccCCccEEEEccCccceeecCC-CccccceeccccCeEEecCCCCccccccCcccccc
Q 045653 13 ESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGE-ADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSI 91 (272)
Q Consensus 13 ~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 91 (272)
+++++++ .+++.+ +. ...++|++|++.++ ++...... ... .+++|+.|+++++ .++.+.
T Consensus 11 ~~l~~s~-~~l~~i---p~--~~~~~l~~L~l~~n-~i~~~~~~~~~~----~l~~L~~L~Ls~N-~l~~~~-------- 70 (192)
T 1w8a_A 11 TTVDCTG-RGLKEI---PR--DIPLHTTELLLNDN-ELGRISSDGLFG----RLPHLVKLELKRN-QLTGIE-------- 70 (192)
T ss_dssp TEEECTT-SCCSSC---CS--CCCTTCSEEECCSC-CCCSBCCSCSGG----GCTTCCEEECCSS-CCCCBC--------
T ss_pred CEEEcCC-CCcCcC---cc--CCCCCCCEEECCCC-cCCccCCccccc----cCCCCCEEECCCC-CCCCcC--------
Confidence 5677766 345555 22 22458999999987 44443322 112 5789999999874 333321
Q ss_pred ccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCc
Q 045653 92 SSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCH 171 (272)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~ 171 (272)
+..+..+++|+.|+++++++..+.+. .+..+++|++|++.+ +
T Consensus 71 ---------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~-N 112 (192)
T 1w8a_A 71 ---------------------------------PNAFEGASHIQELQLGENKIKEISNK----MFLGLHQLKTLNLYD-N 112 (192)
T ss_dssp ---------------------------------TTTTTTCTTCCEEECCSCCCCEECSS----SSTTCTTCCEEECCS-S
T ss_pred ---------------------------------HhHcCCcccCCEEECCCCcCCccCHH----HhcCCCCCCEEECCC-C
Confidence 22345678888888888877775443 355678888888887 3
Q ss_pred CCccccchHHHhccccCcEEEeecCC
Q 045653 172 KLKYLFSASMIRSVEQLQHLDICLCK 197 (272)
Q Consensus 172 ~l~~l~~~~~~~~l~~L~~L~i~~c~ 197 (272)
.++.+ ++..+..+++|+.|++.+.+
T Consensus 113 ~l~~~-~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 113 QISCV-MPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCEE-CTTSSTTCTTCCEEECTTCC
T ss_pred cCCee-CHHHhhcCCCCCEEEeCCCC
Confidence 55555 33456778888888888753
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.35 E-value=2.1e-06 Score=67.35 Aligned_cols=106 Identities=18% Similarity=0.267 Sum_probs=44.5
Q ss_pred CccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccC
Q 045653 133 KLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVT 212 (272)
Q Consensus 133 ~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 212 (272)
+|+.|++.++++..+.+.. .+..+++|++|++.+ +.++.+ .+..+..+++|+.|+++++ .++.+...
T Consensus 30 ~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~------- 96 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDG---LFGRLPHLVKLELKR-NQLTGI-EPNAFEGASHIQELQLGEN-KIKEISNK------- 96 (192)
T ss_dssp TCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCS-SCCCCB-CTTTTTTCTTCCEEECCSC-CCCEECSS-------
T ss_pred CCCEEECCCCcCCccCCcc---ccccCCCCCEEECCC-CCCCCc-CHhHcCCcccCCEEECCCC-cCCccCHH-------
Confidence 4555555555443322110 123445555555554 233333 2233445555555555543 23333311
Q ss_pred CccCCCccCeeecccccccccccC-CCccccCCCcCEEeecCC
Q 045653 213 PCFVFPRVSTLRLIDLPKLRFFYP-GMHTSEWPTLQSLEATGC 254 (272)
Q Consensus 213 ~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~~~L~~L~i~~c 254 (272)
....+++|+.|++++. +++.+.. .+ ..+++|++|++++.
T Consensus 97 ~~~~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDN-QISCVMPGSF--EHLNSLTSLNLASN 136 (192)
T ss_dssp SSTTCTTCCEEECCSS-CCCEECTTSS--TTCTTCCEEECTTC
T ss_pred HhcCCCCCCEEECCCC-cCCeeCHHHh--hcCCCCCEEEeCCC
Confidence 0112355555555543 3333322 22 34455555555544
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.34 E-value=5.7e-06 Score=75.77 Aligned_cols=162 Identities=19% Similarity=0.166 Sum_probs=104.7
Q ss_pred CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653 4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC 83 (272)
Q Consensus 4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 83 (272)
++...+++|++|+++++ +++.+ + +.+++|+.|+++++ ++..++. . ..+|+.|+++++ .++.+|
T Consensus 74 lp~~l~~~L~~L~Ls~N-~l~~i---p---~~l~~L~~L~Ls~N-~l~~ip~--l------~~~L~~L~Ls~N-~l~~lp 136 (571)
T 3cvr_A 74 LPDNLPPQITVLEITQN-ALISL---P---ELPASLEYLDACDN-RLSTLPE--L------PASLKHLDVDNN-QLTMLP 136 (571)
T ss_dssp CCSCCCTTCSEEECCSS-CCSCC---C---CCCTTCCEEECCSS-CCSCCCC--C------CTTCCEEECCSS-CCSCCC
T ss_pred cCHhHcCCCCEEECcCC-CCccc---c---cccCCCCEEEccCC-CCCCcch--h------hcCCCEEECCCC-cCCCCC
Confidence 45556788999999985 45544 2 45899999999998 4554333 1 238999999985 566555
Q ss_pred cCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcC
Q 045653 84 REVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLT 163 (272)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~ 163 (272)
. . .+.|+ .+++..+.- . .++. .+++|+.|++.+|++..+ |. +. ++|+
T Consensus 137 ~--~---------------l~~L~-~L~Ls~N~l-~---~lp~---~l~~L~~L~Ls~N~L~~l-----p~-l~--~~L~ 183 (571)
T 3cvr_A 137 E--L---------------PALLE-YINADNNQL-T---MLPE---LPTSLEVLSVRNNQLTFL-----PE-LP--ESLE 183 (571)
T ss_dssp C--C---------------CTTCC-EEECCSSCC-S---CCCC---CCTTCCEEECCSSCCSCC-----CC-CC--TTCC
T ss_pred C--c---------------Ccccc-EEeCCCCcc-C---cCCC---cCCCcCEEECCCCCCCCc-----ch-hh--CCCC
Confidence 4 1 23333 555554432 1 2333 468999999999977652 22 22 8899
Q ss_pred EEEEecCcCCccccchHHHhccccC-------cEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccc
Q 045653 164 RLVVSNCHKLKYLFSASMIRSVEQL-------QHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPK 230 (272)
Q Consensus 164 ~L~i~~c~~l~~l~~~~~~~~l~~L-------~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 230 (272)
+|++.++ .++.+ |. +.. +| +.|+++++ .++.++ ... ..+++|+.|++++++-
T Consensus 184 ~L~Ls~N-~L~~l-p~--~~~--~L~~~~~~L~~L~Ls~N-~l~~lp--~~l------~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 184 ALDVSTN-LLESL-PA--VPV--RNHHSEETEIFFRCREN-RITHIP--ENI------LSLDPTCTIILEDNPL 242 (571)
T ss_dssp EEECCSS-CCSSC-CC--CC----------CCEEEECCSS-CCCCCC--GGG------GGSCTTEEEECCSSSC
T ss_pred EEECcCC-CCCch-hh--HHH--hhhcccccceEEecCCC-cceecC--HHH------hcCCCCCEEEeeCCcC
Confidence 9999884 56665 43 222 55 99999886 566655 222 2258899999988743
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.34 E-value=2.5e-06 Score=65.80 Aligned_cols=62 Identities=23% Similarity=0.333 Sum_probs=34.3
Q ss_pred CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653 129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC 196 (272)
Q Consensus 129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 196 (272)
..+++|+.|++.++++..+.+. .+..+++|++|++.++ .++.+ +...+..+++|++|++.++
T Consensus 73 ~~l~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQSLPNG----VFDKLTQLKELALDTN-QLKSV-PDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSS
T ss_pred cCCCccCEEECCCCCccccCHH----HhhCCcccCEEECcCC-cceEe-CHHHhcCCcccCEEEecCC
Confidence 3456666666666655542222 2345666666666653 44444 4334455666666666654
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.16 E-value=2.3e-06 Score=80.77 Aligned_cols=110 Identities=19% Similarity=0.192 Sum_probs=81.8
Q ss_pred cccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeecc
Q 045653 126 NDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISE 205 (272)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 205 (272)
..+..+++|+.|+|++|.+..+.. .+..+++|++|++.++ .++.+ | ..+..+++|+.|+++++. ++.++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~-----~~~~l~~L~~L~Ls~N-~l~~l-p-~~~~~l~~L~~L~Ls~N~-l~~lp-- 286 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISA-----NIFKYDFLTRLYLNGN-SLTEL-P-AEIKNLSNLRVLDLSHNR-LTSLP-- 286 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCG-----GGGGCCSCSCCBCTTS-CCSCC-C-GGGGGGTTCCEEECTTSC-CSSCC--
T ss_pred hhhccCCCCcEEECCCCCCCCCCh-----hhcCCCCCCEEEeeCC-cCccc-C-hhhhCCCCCCEEeCcCCc-CCccC--
Confidence 345678899999999997765322 2337899999999985 55655 5 457889999999999874 66554
Q ss_pred CCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653 206 DTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 255 (272)
.. +..+++|+.|+++++ .++.++..+ ..+++|+.|++++++
T Consensus 287 ~~------~~~l~~L~~L~L~~N-~l~~lp~~~--~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 287 AE------LGSCFQLKYFYFFDN-MVTTLPWEF--GNLCNLQFLGVEGNP 327 (727)
T ss_dssp SS------GGGGTTCSEEECCSS-CCCCCCSST--TSCTTCCCEECTTSC
T ss_pred hh------hcCCCCCCEEECCCC-CCCccChhh--hcCCCccEEeCCCCc
Confidence 22 234589999999886 788888776 789999999999885
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.09 E-value=9.7e-06 Score=74.29 Aligned_cols=106 Identities=19% Similarity=0.201 Sum_probs=52.7
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT 207 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 207 (272)
+..+++|+.|++++|++..+ |..+..+++|+.|++.+ +.++.+ | .+..+++|+.|+++++ .++.+.....
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~l-----p~~~~~l~~L~~L~Ls~-N~l~~l-p--~l~~l~~L~~L~Ls~N-~l~~~~~p~~ 528 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRAL-----PPALAALRCLEVLQASD-NALENV-D--GVANLPRLQELLLCNN-RLQQSAAIQP 528 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCC-----CGGGGGCTTCCEEECCS-SCCCCC-G--GGTTCSSCCEEECCSS-CCCSSSTTGG
T ss_pred ccccccCcEeecCccccccc-----chhhhcCCCCCEEECCC-CCCCCC-c--ccCCCCCCcEEECCCC-CCCCCCCcHH
Confidence 45566666666666655532 22344566666666665 344444 3 4556666666666654 3433310011
Q ss_pred ccccCCccCCCccCeeecccccccccccCCC--ccccCCCcCEEe
Q 045653 208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGM--HTSEWPTLQSLE 250 (272)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~~~~~L~~L~ 250 (272)
+..+++|+.|+++++ .++..+... ....+|+|+.|+
T Consensus 529 ------l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 529 ------LVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp ------GGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred ------HhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 223466666666654 444444322 112355555553
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.05 E-value=1.5e-05 Score=61.10 Aligned_cols=84 Identities=23% Similarity=0.265 Sum_probs=56.9
Q ss_pred CCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccc
Q 045653 131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQ 210 (272)
Q Consensus 131 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 210 (272)
.++|+.|++.++++..+.+. .+..+++|++|++.+ ++++.+ +...+..+++|+.|+++++ .++.++. .
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~N-~l~~~~~--~--- 96 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDN-NQLTVL-PAGVFDKLTQLTQLSLNDN-QLKSIPR--G--- 96 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT--T---
T ss_pred CCCCcEEEcCCCcCCccChh----hhcCcccCCEEECCC-CCcCcc-ChhhccCCCCCCEEECCCC-ccCEeCH--H---
Confidence 36788888888877764333 355778888888887 456666 5555677888888888875 4655542 1
Q ss_pred cCCccCCCccCeeecccc
Q 045653 211 VTPCFVFPRVSTLRLIDL 228 (272)
Q Consensus 211 ~~~~~~l~~L~~L~l~~c 228 (272)
....+++|+.|++++.
T Consensus 97 --~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 97 --AFDNLKSLTHIWLLNN 112 (170)
T ss_dssp --TTTTCTTCCEEECCSS
T ss_pred --HhcCCCCCCEEEeCCC
Confidence 1233578888888765
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.02 E-value=2e-05 Score=60.76 Aligned_cols=83 Identities=18% Similarity=0.212 Sum_probs=59.2
Q ss_pred CCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCcccc
Q 045653 132 PKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQV 211 (272)
Q Consensus 132 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 211 (272)
++|+.|+++++++..+.+. .+..+++|++|++.+ ++++.+ +...+..+++|+.|+++++ .+..++. .
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~-N~l~~i-~~~~~~~l~~L~~L~L~~N-~l~~l~~--~---- 99 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNS-NKLTAI-PTGVFDKLTQLTQLDLNDN-HLKSIPR--G---- 99 (174)
T ss_dssp TTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT--T----
T ss_pred CCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCC-CCCCcc-ChhHhCCcchhhEEECCCC-ccceeCH--H----
Confidence 7888999988877764333 456788899999888 467776 5555678888999988875 4655542 1
Q ss_pred CCccCCCccCeeecccc
Q 045653 212 TPCFVFPRVSTLRLIDL 228 (272)
Q Consensus 212 ~~~~~l~~L~~L~l~~c 228 (272)
.+..+++|+.|++.+.
T Consensus 100 -~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 100 -AFDNLKSLTHIYLYNN 115 (174)
T ss_dssp -TTTTCTTCSEEECCSS
T ss_pred -HhccccCCCEEEeCCC
Confidence 1233588888888775
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.98 E-value=0.00094 Score=58.37 Aligned_cols=86 Identities=8% Similarity=0.033 Sum_probs=47.1
Q ss_pred CCCCCCCcCEEEEecCcC----CccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccc
Q 045653 155 KFPRFQSLTRLVVSNCHK----LKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPK 230 (272)
Q Consensus 155 ~~~~l~~L~~L~i~~c~~----l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 230 (272)
.|..+++|+.+.+.+... ...+ +...+.++++|+.+.+.+ +++.+. ... ...+++|+.+.+.. +
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~aF~~c~~L~~l~l~~--~i~~I~--~~a-----F~~c~~L~~l~lp~--~ 333 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMI-HPYCLEGCPKLARFEIPE--SIRILG--QGL-----LGGNRKVTQLTIPA--N 333 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEE-CTTTTTTCTTCCEECCCT--TCCEEC--TTT-----TTTCCSCCEEEECT--T
T ss_pred HhhCCCCCCEEEeCCccccCCcccEE-CHHHhhCCccCCeEEeCC--ceEEEh--hhh-----hcCCCCccEEEECc--c
Confidence 355666666666654211 1123 444556666666666653 344444 111 22237777777743 4
Q ss_pred cccccCCCccccCCCcCEEeecCC
Q 045653 231 LRFFYPGMHTSEWPTLQSLEATGC 254 (272)
Q Consensus 231 l~~~~~~~~~~~~~~L~~L~i~~c 254 (272)
++.+...++ .++ +|+.+.+.+.
T Consensus 334 l~~I~~~aF-~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 334 VTQINFSAF-NNT-GIKEVKVEGT 355 (401)
T ss_dssp CCEECTTSS-SSS-CCCEEEECCS
T ss_pred ccEEcHHhC-CCC-CCCEEEEcCC
Confidence 666655443 456 7888887765
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.94 E-value=3.9e-05 Score=58.76 Aligned_cols=64 Identities=20% Similarity=0.296 Sum_probs=49.6
Q ss_pred ccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653 127 DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC 196 (272)
Q Consensus 127 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 196 (272)
.+..+++|+.|+++++++..+.+. .+..+++|++|++.+ +.++.+ +...+..+++|+.|++.+.
T Consensus 49 ~~~~l~~L~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~-N~l~~~-~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 49 VFDRLTQLTRLDLDNNQLTVLPAG----VFDKLTQLTQLSLND-NQLKSI-PRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred hhcCcccCCEEECCCCCcCccChh----hccCCCCCCEEECCC-CccCEe-CHHHhcCCCCCCEEEeCCC
Confidence 356788999999999987764333 356789999999988 467776 5556788999999999875
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.93 E-value=2e-05 Score=72.24 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=84.2
Q ss_pred CCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCcccc
Q 045653 132 PKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQV 211 (272)
Q Consensus 132 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 211 (272)
..|+.|++++|++..+ |. +..+++|+.|++.++ .++.+ |. .+..+++|+.|+++++ .++.++ .
T Consensus 441 ~~L~~L~Ls~n~l~~l-----p~-~~~l~~L~~L~Ls~N-~l~~l-p~-~~~~l~~L~~L~Ls~N-~l~~lp---~---- 503 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVL-----CH-LEQLLLVTHLDLSHN-RLRAL-PP-ALAALRCLEVLQASDN-ALENVD---G---- 503 (567)
T ss_dssp TTCSEEECTTSCCSSC-----CC-GGGGTTCCEEECCSS-CCCCC-CG-GGGGCTTCCEEECCSS-CCCCCG---G----
T ss_pred cCceEEEecCCCCCCC-----cC-ccccccCcEeecCcc-ccccc-ch-hhhcCCCCCEEECCCC-CCCCCc---c----
Confidence 3689999999977753 32 557899999999984 56666 53 6889999999999986 465543 1
Q ss_pred CCccCCCccCeeecccccccccc--cCCCccccCCCcCEEeecCCCCCccccccc
Q 045653 212 TPCFVFPRVSTLRLIDLPKLRFF--YPGMHTSEWPTLQSLEATGCDNLKIFGSEL 264 (272)
Q Consensus 212 ~~~~~l~~L~~L~l~~c~~l~~~--~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~ 264 (272)
+..+++|+.|+++++ +++.+ +..+ ..+++|+.|++++++ ++.+|+..
T Consensus 504 --l~~l~~L~~L~Ls~N-~l~~~~~p~~l--~~l~~L~~L~L~~N~-l~~~~~~~ 552 (567)
T 1dce_A 504 --VANLPRLQELLLCNN-RLQQSAAIQPL--VSCPRLVLLNLQGNS-LCQEEGIQ 552 (567)
T ss_dssp --GTTCSSCCEEECCSS-CCCSSSTTGGG--GGCTTCCEEECTTSG-GGGSSSCT
T ss_pred --cCCCCCCcEEECCCC-CCCCCCCcHHH--hcCCCCCEEEecCCc-CCCCccHH
Confidence 334699999999986 77777 4555 689999999999884 66666543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.90 E-value=5.1e-05 Score=58.36 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=49.9
Q ss_pred ccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCC
Q 045653 127 DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCK 197 (272)
Q Consensus 127 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 197 (272)
.+..+++|+.|+++++++..+.+. .+..+++|++|++.+ +.+..+ +...+..+++|+.|++.+++
T Consensus 52 ~~~~l~~L~~L~Ls~N~l~~i~~~----~~~~l~~L~~L~L~~-N~l~~l-~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 52 VFDHLVNLQQLYFNSNKLTAIPTG----VFDKLTQLTQLDLND-NHLKSI-PRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCSEEECCSSC
T ss_pred HhcCCcCCCEEECCCCCCCccChh----HhCCcchhhEEECCC-Ccccee-CHHHhccccCCCEEEeCCCC
Confidence 356788999999999988764332 355789999999988 566776 55567889999999998863
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.87 E-value=9.5e-07 Score=69.57 Aligned_cols=107 Identities=19% Similarity=0.150 Sum_probs=70.8
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT 207 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 207 (272)
+..+++|+.|++.+|++..+ |..+..+++|++|++.++ .++.+ + .+..+++|+.|++.++ .++.+....
T Consensus 66 ~~~l~~L~~L~l~~n~l~~l-----~~~~~~~~~L~~L~L~~N-~l~~l-~--~~~~l~~L~~L~l~~N-~i~~~~~~~- 134 (198)
T 1ds9_A 66 LSGMENLRILSLGRNLIKKI-----ENLDAVADTLEELWISYN-QIASL-S--GIEKLVNLRVLYMSNN-KITNWGEID- 134 (198)
T ss_dssp HHHHTTCCEEEEEEEEECSC-----SSHHHHHHHCSEEEEEEE-ECCCH-H--HHHHHHHSSEEEESEE-ECCCHHHHH-
T ss_pred cccCCCCCEEECCCCCcccc-----cchhhcCCcCCEEECcCC-cCCcC-C--ccccCCCCCEEECCCC-cCCchhHHH-
Confidence 35578999999999976642 223335689999999985 56665 3 5788999999999986 354433111
Q ss_pred ccccCCccCCCccCeeecccccccccccCC--------CccccCCCcCEEe
Q 045653 208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPG--------MHTSEWPTLQSLE 250 (272)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--------~~~~~~~~L~~L~ 250 (272)
....+++|+.|++.+++--...+.. .....+++|+.|+
T Consensus 135 -----~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 135 -----KLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp -----HHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred -----HHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 1233589999999887433322221 0125688888887
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.86 E-value=0.00094 Score=58.38 Aligned_cols=109 Identities=10% Similarity=0.131 Sum_probs=75.0
Q ss_pred cccCCCCCccEEEeccccce-----EeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcc
Q 045653 126 NDKVRLPKLEALELHEINVE-----KIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLL 200 (272)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~l~-----~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~ 200 (272)
..+..+++|+.+.+.++.+. .+... .|..+++|+.+.+.+ .++.+ +...+.++++|+.+.+.. +++
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~----aF~~c~~L~~l~l~~--~i~~I-~~~aF~~c~~L~~l~lp~--~l~ 335 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPY----CLEGCPKLARFEIPE--SIRIL-GQGLLGGNRKVTQLTIPA--NVT 335 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTT----TTTTCTTCCEECCCT--TCCEE-CTTTTTTCCSCCEEEECT--TCC
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHH----HhhCCccCCeEEeCC--ceEEE-hhhhhcCCCCccEEEECc--ccc
Confidence 35678899999999887332 33333 577899999999984 57777 667888999999999965 466
Q ss_pred eeeccCCccccCCccCCCccCeeecccccccccccCCCccccCC-CcCEEeecC
Q 045653 201 GIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWP-TLQSLEATG 253 (272)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~-~L~~L~i~~ 253 (272)
.+. ... .... +|+.+.+.+. .+..+..... .+++ .++.|.+..
T Consensus 336 ~I~--~~a-----F~~~-~L~~l~l~~n-~~~~l~~~~F-~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 336 QIN--FSA-----FNNT-GIKEVKVEGT-TPPQVFEKVW-YGFPDDITVIRVPA 379 (401)
T ss_dssp EEC--TTS-----SSSS-CCCEEEECCS-SCCBCCCSSC-CCSCTTCCEEEECG
T ss_pred EEc--HHh-----CCCC-CCCEEEEcCC-CCcccccccc-cCCCCCccEEEeCH
Confidence 665 222 2224 8999999774 5555555432 3453 677777653
No 143
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.85 E-value=1.4e-05 Score=69.07 Aligned_cols=43 Identities=12% Similarity=0.055 Sum_probs=21.8
Q ss_pred cccCCccEEEEccCccc-eeecC-CCccccce--eccccCeEEecCC
Q 045653 34 DSFNELKTIKVESCDEI-FAIGG-EADVVTEG--IFAQISCLSLGNL 76 (272)
Q Consensus 34 ~~~~~L~~L~l~~c~~l-~~~~~-~~~~~~~~--~l~~L~~L~l~~c 76 (272)
..+++|+.|.+.+...- ....+ +......+ .+|+|+.|.++++
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCC
Confidence 45788888888653110 00000 00011122 5688888888776
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.82 E-value=1.6e-05 Score=75.02 Aligned_cols=106 Identities=17% Similarity=0.145 Sum_probs=66.7
Q ss_pred eccccCeEEecCCCCccccccCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEecccc
Q 045653 64 IFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEIN 143 (272)
Q Consensus 64 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 143 (272)
.++.|+.|+++++. +..++..... ++.|+ .+.+..+.- . .++..+..+++|+.|+|++|+
T Consensus 222 ~l~~L~~L~Ls~n~-l~~l~~~~~~--------------l~~L~-~L~Ls~N~l-~---~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 222 DDQLWHALDLSNLQ-IFNISANIFK--------------YDFLT-RLYLNGNSL-T---ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp CCCCCCEEECTTSC-CSCCCGGGGG--------------CCSCS-CCBCTTSCC-S---CCCGGGGGGTTCCEEECTTSC
T ss_pred cCCCCcEEECCCCC-CCCCChhhcC--------------CCCCC-EEEeeCCcC-c---ccChhhhCCCCCCEEeCcCCc
Confidence 46778888887753 4444432211 23333 444444322 1 355556778888888888887
Q ss_pred ceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCC
Q 045653 144 VEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCK 197 (272)
Q Consensus 144 l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 197 (272)
+..+ |..+..+++|++|++.++ .++.+ |.. +..+++|+.|+++++.
T Consensus 282 l~~l-----p~~~~~l~~L~~L~L~~N-~l~~l-p~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 282 LTSL-----PAELGSCFQLKYFYFFDN-MVTTL-PWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CSSC-----CSSGGGGTTCSEEECCSS-CCCCC-CSS-TTSCTTCCCEECTTSC
T ss_pred CCcc-----ChhhcCCCCCCEEECCCC-CCCcc-Chh-hhcCCCccEEeCCCCc
Confidence 6642 334557888888888875 55665 543 7778888888888764
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.80 E-value=7.8e-07 Score=70.08 Aligned_cols=112 Identities=16% Similarity=0.140 Sum_probs=81.6
Q ss_pred cccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceee
Q 045653 124 LFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGII 203 (272)
Q Consensus 124 ~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~ 203 (272)
++..+..+++|+.|++++|++..+ | .+..+++|++|++.++ .+..+ + .....+++|+.|+++++ .+..++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l-----~-~~~~l~~L~~L~l~~n-~l~~l-~-~~~~~~~~L~~L~L~~N-~l~~l~ 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKI-----S-SLSGMENLRILSLGRN-LIKKI-E-NLDAVADTLEELWISYN-QIASLS 109 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCC-----C-CHHHHTTCCEEEEEEE-EECSC-S-SHHHHHHHCSEEEEEEE-ECCCHH
T ss_pred hhHHHhcCCCCCEEECCCCCCccc-----c-ccccCCCCCEEECCCC-Ccccc-c-chhhcCCcCCEEECcCC-cCCcCC
Confidence 333557789999999999977662 2 3557899999999985 45565 4 35667899999999997 465543
Q ss_pred ccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653 204 SEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 204 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~ 255 (272)
. ...+++|+.|+++++ .++.++.......+++|++|++.+++
T Consensus 110 ---~------~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 110 ---G------IEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ---H------HHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ---c------cccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 1 233589999999986 56665431112578999999999874
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.75 E-value=0.0001 Score=62.88 Aligned_cols=91 Identities=14% Similarity=0.227 Sum_probs=67.9
Q ss_pred ccccccCCCCCccEEEecc-ccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcce
Q 045653 123 TLFNDKVRLPKLEALELHE-INVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLG 201 (272)
Q Consensus 123 ~~~~~~~~l~~L~~L~L~~-~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 201 (272)
.+|. +..+++|+.|+|++ +++..+.+. .+..+++|++|++.++ .+..+ ++..+.++++|+.|+++++ ++..
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~ 94 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKS-GLRFV-APDAFHFTPRLSRLNLSFN-ALES 94 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSS-CCCEE-CTTGGGSCSCCCEEECCSS-CCSC
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCC-cccee-CHHHhcCCcCCCEEeCCCC-ccce
Confidence 5666 77888999999997 788876544 4668999999999984 67877 5567889999999999985 5766
Q ss_pred eeccCCccccCCccCCCccCeeeccccc
Q 045653 202 IISEDTAIQVTPCFVFPRVSTLRLIDLP 229 (272)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 229 (272)
++. ..... ..|+.|++.+.+
T Consensus 95 ~~~--~~~~~------~~L~~l~l~~N~ 114 (347)
T 2ifg_A 95 LSW--KTVQG------LSLQELVLSGNP 114 (347)
T ss_dssp CCS--TTTCS------CCCCEEECCSSC
T ss_pred eCH--HHccc------CCceEEEeeCCC
Confidence 652 21111 238899887653
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.70 E-value=3.2e-05 Score=66.75 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=37.3
Q ss_pred CCCCcceeeecccccccc----ccc---ccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCC
Q 045653 8 AFPLLESLTLHNLINLER----ICI---DRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLP 77 (272)
Q Consensus 8 ~~~~L~~L~L~~~~~l~~----~~~---~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 77 (272)
.|++|++|.+.+.. .+. +.. .......+|+|++|.++++..+.. .. +..++|++|.+..|.
T Consensus 137 ~l~~L~~L~l~~~~-~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l-~~-------~~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 137 KFAHFEGLFWGDID-FEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI-GK-------KPRPNLKSLEIISGG 204 (362)
T ss_dssp HHTTCSEEEECCCC-TTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC-CS-------CBCTTCSEEEEECSB
T ss_pred hcchhhheeecCcc-hhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee-cc-------ccCCCCcEEEEecCC
Confidence 57899999986532 110 100 012234579999999998843321 11 136899999998653
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.64 E-value=0.00016 Score=61.64 Aligned_cols=91 Identities=26% Similarity=0.293 Sum_probs=69.5
Q ss_pred CCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccc
Q 045653 152 VPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKL 231 (272)
Q Consensus 152 ~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 231 (272)
+|. +..+++|++|++.+.+.+..+ +...+.++++|+.|+++++ +++.++.. . +..+++|+.|++++. ++
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~~--~-----~~~l~~L~~L~l~~N-~l 92 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKS-GLRFVAPD--A-----FHFTPRLSRLNLSFN-AL 92 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSS-CCCEECTT--G-----GGSCSCCCEEECCSS-CC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCC-ccceeCHH--H-----hcCCcCCCEEeCCCC-cc
Confidence 344 557899999999987888888 6667889999999999996 58777621 1 233699999999985 78
Q ss_pred ccccCCCccccCCCcCEEeecCCC
Q 045653 232 RFFYPGMHTSEWPTLQSLEATGCD 255 (272)
Q Consensus 232 ~~~~~~~~~~~~~~L~~L~i~~c~ 255 (272)
+.++.... ..++ |+.|++.+.+
T Consensus 93 ~~~~~~~~-~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 93 ESLSWKTV-QGLS-LQELVLSGNP 114 (347)
T ss_dssp SCCCSTTT-CSCC-CCEEECCSSC
T ss_pred ceeCHHHc-ccCC-ceEEEeeCCC
Confidence 88876542 2333 9999998764
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.57 E-value=8.6e-07 Score=77.01 Aligned_cols=65 Identities=17% Similarity=0.084 Sum_probs=28.5
Q ss_pred CCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccc---hHHHhccccCcEEEeecC
Q 045653 131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFS---ASMIRSVEQLQHLDICLC 196 (272)
Q Consensus 131 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~---~~~~~~l~~L~~L~i~~c 196 (272)
.++|+.|+|.+|.+.......+...+...++|++|++.++. +.+... ...+...++|++|++++|
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 45566666666643321111111111234556666666533 333200 122334456666666655
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.35 E-value=4.6e-06 Score=72.40 Aligned_cols=173 Identities=16% Similarity=0.115 Sum_probs=95.6
Q ss_pred CCCcceeeecccccccccccc--ccc-ccccCCccEEEEccCccceeecCCCccccce--eccccCeEEecCCCCccccc
Q 045653 9 FPLLESLTLHNLINLERICID--RLK-VDSFNELKTIKVESCDEIFAIGGEADVVTEG--IFAQISCLSLGNLPQLTSFC 83 (272)
Q Consensus 9 ~~~L~~L~L~~~~~l~~~~~~--~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~ 83 (272)
.++|++|+++++. +...... ... ....++|++|++++|. +..... ..+ .+++|+.|++++| .+.+..
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~-----~~l~~~L~~L~~L~Ls~n-~l~~~~ 142 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGL-----RTLLPVFLRARKLGLQLN-SLGPEA 142 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHH-----HHTHHHHHTEEEEECCSS-CCCHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHH-----HHHHHHHHhccHhhcCCC-CCCHHH
Confidence 4689999999865 3322100 001 1123689999999984 332111 111 4678999999987 343321
Q ss_pred cCccccccccccccccccccceeecceeeeccCCCC-cccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCc
Q 045653 84 REVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLD-TSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSL 162 (272)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~-~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L 162 (272)
.......+ ....+.|+ .+++..|.-.. +...+...+...++|+.|+|++|.+.......+...+...++|
T Consensus 143 ~~~L~~~L--------~~~~~~L~-~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L 213 (372)
T 3un9_A 143 CKDLRDLL--------LHDQCQIT-TLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL 213 (372)
T ss_dssp HHHHHHHH--------HSTTCCCC-EEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCC
T ss_pred HHHHHHHH--------HhcCCccc-eeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCc
Confidence 10000000 00123444 66666654211 1112344456788999999999965532111111123456899
Q ss_pred CEEEEecCcCCccccc---hHHHhccccCcEEEeecCCCcc
Q 045653 163 TRLVVSNCHKLKYLFS---ASMIRSVEQLQHLDICLCKGLL 200 (272)
Q Consensus 163 ~~L~i~~c~~l~~l~~---~~~~~~l~~L~~L~i~~c~~l~ 200 (272)
++|++++| .+++... ...+...++|++|+++++. +.
T Consensus 214 ~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~ 252 (372)
T 3un9_A 214 QELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE-LS 252 (372)
T ss_dssp CEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS-CC
T ss_pred CeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC-CC
Confidence 99999986 4554311 1234456899999999874 54
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.29 E-value=0.00027 Score=54.83 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=6.5
Q ss_pred CCCccEEEeccc
Q 045653 131 LPKLEALELHEI 142 (272)
Q Consensus 131 l~~L~~L~L~~~ 142 (272)
.++|+.|+|.+|
T Consensus 92 n~~L~~L~L~~N 103 (185)
T 1io0_A 92 NNTLKSLNVESN 103 (185)
T ss_dssp CSSCCEEECCSS
T ss_pred CCCcCEEECcCC
Confidence 345555555555
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.74 E-value=0.81 Score=39.26 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=20.2
Q ss_pred CCccCeeecccccccccccCCCccccCCCcCEEeec
Q 045653 217 FPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEAT 252 (272)
Q Consensus 217 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~ 252 (272)
.++|+++.+.. .++.+...+. .+|++|+.+++.
T Consensus 342 c~~L~~i~lp~--~l~~I~~~aF-~~C~~L~~i~lp 374 (394)
T 4fs7_A 342 CTSLSNINFPL--SLRKIGANAF-QGCINLKKVELP 374 (394)
T ss_dssp CTTCCEECCCT--TCCEECTTTB-TTCTTCCEEEEE
T ss_pred CCCCCEEEECc--cccEehHHHh-hCCCCCCEEEEC
Confidence 36677776643 3566655432 467777777764
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.64 E-value=0.00085 Score=51.98 Aligned_cols=124 Identities=13% Similarity=0.027 Sum_probs=72.7
Q ss_pred cccCCCCCccEEEeccc-cceEeccCCCCCCCCCCCCcCEEEEecCcCCccccc---hHHHhccccCcEEEeecCCCcce
Q 045653 126 NDKVRLPKLEALELHEI-NVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFS---ASMIRSVEQLQHLDICLCKGLLG 201 (272)
Q Consensus 126 ~~~~~l~~L~~L~L~~~-~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~---~~~~~~l~~L~~L~i~~c~~l~~ 201 (272)
..+...++|++|+|.+| .+.......+...+...++|++|+++++. +.+-.. ...+...++|++|++++|. +..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~ 107 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-ISG 107 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-CCH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-CCH
Confidence 34566789999999998 76542111111123457899999999864 544311 1234456889999999873 433
Q ss_pred eeccCCccccCCccCCCccCeeec--ccccccccccCCC---ccccCCCcCEEeecCCC
Q 045653 202 IISEDTAIQVTPCFVFPRVSTLRL--IDLPKLRFFYPGM---HTSEWPTLQSLEATGCD 255 (272)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~L~~L~l--~~c~~l~~~~~~~---~~~~~~~L~~L~i~~c~ 255 (272)
.....-. ..+...++|++|++ .++ .+++-.... .....+.|++|+++++.
T Consensus 108 ~g~~~l~---~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALV---EALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHH---HGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHH---HHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 2100000 11223378999999 444 555432211 11456789999998874
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.32 E-value=0.015 Score=47.68 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=34.6
Q ss_pred CCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccc--cCcEEEeecCC
Q 045653 130 RLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVE--QLQHLDICLCK 197 (272)
Q Consensus 130 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~--~L~~L~i~~c~ 197 (272)
.+|+|+.|+|++|++..+. .++..+..+++|+.|++.+ +.+..+ ..+..+. +|++|++.+++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~-N~i~~~---~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSG-NELKSE---RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTT-SCCCSG---GGGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCC-CccCCc---hhhhhcccCCcceEEccCCc
Confidence 4667777777777555421 1111223567777777766 444444 1223333 77777777754
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.26 E-value=0.25 Score=42.50 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=66.2
Q ss_pred cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT 207 (272)
Q Consensus 128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 207 (272)
+..+.+|+.+.+... +..+... .+..+++|+.+.+. ..++.+ +...+.++.+|+.+.+.. +++.+. +.
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~----aF~~c~~L~~i~l~--~~i~~I-~~~aF~~c~~L~~i~lp~--~v~~I~--~~ 328 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTG----AFMNCPALQDIEFS--SRITEL-PESVFAGCISLKSIDIPE--GITQIL--DD 328 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTT----TTTTCTTCCEEECC--TTCCEE-CTTTTTTCTTCCEEECCT--TCCEEC--TT
T ss_pred eeecccccEEecccc-cceecCc----ccccccccccccCC--Cccccc-CceeecCCCCcCEEEeCC--cccEeh--Hh
Confidence 455566777766544 1122222 35567888888775 355566 556777888888888864 455554 21
Q ss_pred ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecC
Q 045653 208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATG 253 (272)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~ 253 (272)
. .....+|+++.+.. .++.+...++ .+|++|+.+++.+
T Consensus 329 a-----F~~C~~L~~i~ip~--sv~~I~~~aF-~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 329 A-----FAGCEQLERIAIPS--SVTKIPESAF-SNCTALNNIEYSG 366 (394)
T ss_dssp T-----TTTCTTCCEEEECT--TCCBCCGGGG-TTCTTCCEEEESS
T ss_pred H-----hhCCCCCCEEEECc--ccCEEhHhHh-hCCCCCCEEEECC
Confidence 1 22247888888853 4666665442 5888999988765
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.16 E-value=0.022 Score=46.67 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=55.4
Q ss_pred CCCCcCEEEEecCcCCccccc-hHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccC
Q 045653 158 RFQSLTRLVVSNCHKLKYLFS-ASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYP 236 (272)
Q Consensus 158 ~l~~L~~L~i~~c~~l~~l~~-~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 236 (272)
.+++|++|++++ +++..+.+ +..+..+++|+.|++++. ++..+. .... ...+ +|++|.+.+.+--..++.
T Consensus 168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~---~l~~---l~~l-~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 168 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER---ELDK---IKGL-KLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG---GGGG---GTTS-CCSEEECTTSTTGGGCSS
T ss_pred hCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCC-ccCCch---hhhh---cccC-CcceEEccCCcCccccCc
Confidence 578999999998 56666511 135568999999999985 454442 1111 2223 899999998764333331
Q ss_pred -----CCccccCCCcCEEeec
Q 045653 237 -----GMHTSEWPTLQSLEAT 252 (272)
Q Consensus 237 -----~~~~~~~~~L~~L~i~ 252 (272)
......+|+|+.|+-.
T Consensus 239 ~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHHHHHCTTCCEESSC
T ss_pred chhHHHHHHHHCcccCeECCc
Confidence 1123578999988743
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.21 E-value=0.24 Score=42.62 Aligned_cols=99 Identities=14% Similarity=0.157 Sum_probs=52.6
Q ss_pred CCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCcc
Q 045653 130 RLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAI 209 (272)
Q Consensus 130 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 209 (272)
.+.+|+.+.+... ++.|... .+..+.+|+++.|-+ .++.+ +...+.++.+|+.+.+.. +++.+. +.
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~----aF~~c~~L~~i~lp~--~v~~I-~~~aF~~c~~L~~i~lp~--~l~~I~--~~-- 360 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEE----AFESCTSLVSIDLPY--LVEEI-GKRSFRGCTSLSNINFPL--SLRKIG--AN-- 360 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTT----TTTTCTTCCEECCCT--TCCEE-CTTTTTTCTTCCEECCCT--TCCEEC--TT--
T ss_pred ccccccccccccc-cceechh----hhcCCCCCCEEEeCC--cccEE-hHHhccCCCCCCEEEECc--cccEeh--HH--
Confidence 3445555555432 3332222 355667777777743 35555 445666777777777754 344444 21
Q ss_pred ccCCccCCCccCeeecccccccccccCCCccccCCCcCEE
Q 045653 210 QVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSL 249 (272)
Q Consensus 210 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 249 (272)
+....++|+++.+.. .++.+...+ .+|++|+.+
T Consensus 361 ---aF~~C~~L~~i~lp~--~~~~~~~~F--~~c~~L~~I 393 (394)
T 4fs7_A 361 ---AFQGCINLKKVELPK--RLEQYRYDF--EDTTKFKWI 393 (394)
T ss_dssp ---TBTTCTTCCEEEEEG--GGGGGGGGB--CTTCEEEEE
T ss_pred ---HhhCCCCCCEEEECC--CCEEhhhee--cCCCCCcEE
Confidence 122347888888753 344443222 566666654
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.73 E-value=0.99 Score=38.34 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=19.0
Q ss_pred CCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEee
Q 045653 156 FPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDIC 194 (272)
Q Consensus 156 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~ 194 (272)
+..+.+|+++.+.+ ..++.+ +...+.++.+|+.+.+.
T Consensus 282 F~~c~~L~~i~l~~-~~i~~I-~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 282 CSGCSNLTKVVMDN-SAIETL-EPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTCTTCCEEEECC-TTCCEE-CTTTTTTCTTCCEEECC
T ss_pred cccccccccccccc-ccccee-hhhhhcCCCCCCEEEcC
Confidence 44556666665543 223333 33445556666666554
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.36 E-value=0.87 Score=38.69 Aligned_cols=83 Identities=11% Similarity=0.088 Sum_probs=45.4
Q ss_pred CCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccccccc
Q 045653 156 FPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFY 235 (272)
Q Consensus 156 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 235 (272)
+..+.+|+.+.+.+ .+..+ +...+.++++|+.+.+.+. .++.+. +.. ....++|+++.+.. .++.+.
T Consensus 259 F~~~~~l~~i~l~~--~i~~i-~~~aF~~c~~L~~i~l~~~-~i~~I~--~~a-----F~~c~~L~~i~lp~--~l~~I~ 325 (379)
T 4h09_A 259 LQNCTALKTLNFYA--KVKTV-PYLLCSGCSNLTKVVMDNS-AIETLE--PRV-----FMDCVKLSSVTLPT--ALKTIQ 325 (379)
T ss_dssp TTTCTTCCEEEECC--CCSEE-CTTTTTTCTTCCEEEECCT-TCCEEC--TTT-----TTTCTTCCEEECCT--TCCEEC
T ss_pred cceeehhccccccc--cceec-ccccccccccccccccccc-ccceeh--hhh-----hcCCCCCCEEEcCc--cccEEH
Confidence 34556666666643 34444 4445566677777766542 244443 111 22237788887743 466665
Q ss_pred CCCccccCCCcCEEeec
Q 045653 236 PGMHTSEWPTLQSLEAT 252 (272)
Q Consensus 236 ~~~~~~~~~~L~~L~i~ 252 (272)
..+. .+|++|+.+.+.
T Consensus 326 ~~aF-~~C~~L~~i~ip 341 (379)
T 4h09_A 326 VYAF-KNCKALSTISYP 341 (379)
T ss_dssp TTTT-TTCTTCCCCCCC
T ss_pred HHHh-hCCCCCCEEEEC
Confidence 5432 467777777663
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=87.56 E-value=2.8 Score=35.77 Aligned_cols=82 Identities=6% Similarity=0.135 Sum_probs=52.8
Q ss_pred CCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccccccc
Q 045653 156 FPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFY 235 (272)
Q Consensus 156 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 235 (272)
|..+.+|+++.+-+ .+..+ +...+.++++|+.+.+.. .+..+. +.. ....++|+++.+.+ .++.+.
T Consensus 261 F~~c~~L~~i~lp~--~~~~I-~~~aF~~c~~L~~i~l~~--~i~~I~--~~a-----F~~c~~L~~i~lp~--~v~~I~ 326 (394)
T 4gt6_A 261 FDSCAYLASVKMPD--SVVSI-GTGAFMNCPALQDIEFSS--RITELP--ESV-----FAGCISLKSIDIPE--GITQIL 326 (394)
T ss_dssp TTTCSSCCEEECCT--TCCEE-CTTTTTTCTTCCEEECCT--TCCEEC--TTT-----TTTCTTCCEEECCT--TCCEEC
T ss_pred eeecccccEEeccc--cccee-cCcccccccccccccCCC--cccccC--cee-----ecCCCCcCEEEeCC--cccEeh
Confidence 55667777777753 33344 445566778888887753 455554 222 22248899999864 577776
Q ss_pred CCCccccCCCcCEEeec
Q 045653 236 PGMHTSEWPTLQSLEAT 252 (272)
Q Consensus 236 ~~~~~~~~~~L~~L~i~ 252 (272)
..++ .+|.+|+.+.+.
T Consensus 327 ~~aF-~~C~~L~~i~ip 342 (394)
T 4gt6_A 327 DDAF-AGCEQLERIAIP 342 (394)
T ss_dssp TTTT-TTCTTCCEEEEC
T ss_pred HhHh-hCCCCCCEEEEC
Confidence 6543 588999998874
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=81.67 E-value=1.4 Score=31.46 Aligned_cols=34 Identities=12% Similarity=0.058 Sum_probs=22.5
Q ss_pred CCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEec
Q 045653 132 PKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSN 169 (272)
Q Consensus 132 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~ 169 (272)
++|+.|+|+++++..+..+ .+..+++|+.|++.+
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPG----LLDALPALRTAHLGA 64 (130)
T ss_dssp TTCSEEECTTSCCSSCCTT----TGGGCTTCCEEECCS
T ss_pred cCCCEEECCCCcCCccChh----hhhhccccCEEEecC
Confidence 3678888888777664333 344567777777765
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=76.73 E-value=0.46 Score=36.89 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=8.5
Q ss_pred CCCCccEEEeccccce
Q 045653 130 RLPKLEALELHEINVE 145 (272)
Q Consensus 130 ~l~~L~~L~L~~~~l~ 145 (272)
.-..|+.|+|.+|.+.
T Consensus 68 ~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 68 NSKHIEKFSLANTAIS 83 (197)
T ss_dssp TCSCCCEEECTTSCCB
T ss_pred hCCCcCEEEccCCCCC
Confidence 3345666666655443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=70.78 E-value=2.4 Score=30.21 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=30.2
Q ss_pred CCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCC
Q 045653 159 FQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCK 197 (272)
Q Consensus 159 l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 197 (272)
.++|++|++.+ +.++.+ +...+..+++|+.|++.+.+
T Consensus 30 p~~l~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 30 PVDTTELVLTG-NNLTAL-PPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CTTCSEEECTT-SCCSSC-CTTTGGGCTTCCEEECCSSC
T ss_pred CcCCCEEECCC-CcCCcc-ChhhhhhccccCEEEecCCC
Confidence 35799999988 677777 77778889999999998753
No 164
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=33.72 E-value=22 Score=23.81 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=6.2
Q ss_pred HHhccccCcEEEee
Q 045653 181 MIRSVEQLQHLDIC 194 (272)
Q Consensus 181 ~~~~l~~L~~L~i~ 194 (272)
.+.++.+|+.+.+.
T Consensus 38 aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 38 MFSGCTALEKLILT 51 (100)
T ss_dssp SSTTCTTCCCEEEC
T ss_pred HHhccCCccEEEEc
Confidence 33444444444443
Done!