Query 045654
Match_columns 137
No_of_seqs 114 out of 1044
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 04:07:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12446 undecaprenyldiphospho 99.9 6.6E-25 1.4E-29 177.6 8.7 128 1-134 41-229 (352)
2 COG0707 MurG UDP-N-acetylgluco 99.9 2.1E-23 4.6E-28 169.5 8.7 129 1-135 41-228 (357)
3 TIGR03492 conserved hypothetic 99.5 2.3E-15 4.9E-20 123.8 2.0 130 1-135 41-255 (396)
4 TIGR00215 lpxB lipid-A-disacch 99.0 8.5E-11 1.8E-15 96.3 0.5 68 38-107 124-204 (385)
5 PRK13608 diacylglycerol glucos 98.1 2.8E-06 6.1E-11 69.5 3.1 85 43-129 138-241 (391)
6 PRK00025 lpxB lipid-A-disaccha 98.0 9.9E-06 2.1E-10 65.2 5.5 92 40-134 123-236 (380)
7 PRK13609 diacylglycerol glucos 97.9 9.5E-06 2.1E-10 65.5 2.9 85 42-129 137-240 (380)
8 cd03785 GT1_MurG MurG is an N- 97.7 8.5E-05 1.8E-09 58.8 6.3 95 38-135 120-227 (350)
9 PLN02605 monogalactosyldiacylg 97.5 0.00011 2.3E-09 59.9 3.9 82 45-129 143-251 (382)
10 PRK00726 murG undecaprenyldiph 97.4 0.00033 7.2E-09 55.9 6.1 95 38-135 122-228 (357)
11 TIGR01133 murG undecaprenyldip 97.3 0.00076 1.6E-08 53.3 6.2 92 38-135 121-225 (348)
12 PRK14089 ipid-A-disaccharide s 97.2 0.00046 9.9E-09 56.4 4.2 89 42-135 118-214 (347)
13 TIGR03590 PseG pseudaminic aci 95.1 0.037 8E-07 43.5 4.5 81 52-135 118-217 (279)
14 COG0763 LpxB Lipid A disacchar 94.3 0.16 3.5E-06 42.1 6.5 93 42-135 127-238 (381)
15 PF06925 MGDG_synth: Monogalac 94.1 0.014 3E-07 42.4 -0.0 34 47-80 132-169 (169)
16 PF02684 LpxB: Lipid-A-disacch 90.4 0.92 2E-05 37.6 6.2 91 42-133 124-232 (373)
17 PLN02871 UDP-sulfoquinovose:DA 81.8 3.9 8.3E-05 34.1 5.6 83 46-129 199-299 (465)
18 cd03786 GT1_UDP-GlcNAc_2-Epime 81.2 0.45 9.8E-06 37.7 -0.2 45 41-85 129-178 (363)
19 PRK01021 lpxB lipid-A-disaccha 78.9 6.1 0.00013 34.9 6.0 55 42-97 352-407 (608)
20 TIGR03568 NeuC_NnaA UDP-N-acet 74.4 1.3 2.9E-05 36.1 0.7 45 41-86 133-182 (365)
21 TIGR00661 MJ1255 conserved hyp 66.1 2.8 6E-05 33.2 0.9 40 38-79 122-165 (321)
22 TIGR02149 glgA_Coryne glycogen 57.9 56 0.0012 25.8 7.1 44 42-86 134-184 (388)
23 COG4741 Predicted secreted end 53.1 15 0.00033 27.0 2.7 78 41-128 87-171 (175)
24 PF08660 Alg14: Oligosaccharid 49.2 13 0.00028 27.3 1.9 33 42-77 136-168 (170)
25 cd05844 GT1_like_7 Glycosyltra 44.1 23 0.00051 27.5 2.8 41 45-85 135-179 (367)
26 cd03820 GT1_amsD_like This fam 40.8 89 0.0019 23.2 5.5 40 46-86 129-171 (348)
27 cd04962 GT1_like_5 This family 39.0 1.2E+02 0.0026 23.5 6.2 40 46-85 136-179 (371)
28 cd03817 GT1_UGDG_like This fam 35.6 91 0.002 23.6 4.9 42 45-86 141-185 (374)
29 TIGR00236 wecB UDP-N-acetylglu 35.3 11 0.00024 30.0 -0.3 43 42-84 130-177 (365)
30 cd03811 GT1_WabH_like This fam 34.8 92 0.002 23.1 4.7 42 45-86 128-174 (353)
31 PRK10307 putative glycosyl tra 34.8 1.1E+02 0.0025 24.6 5.6 40 46-85 165-208 (412)
32 PF02350 Epimerase_2: UDP-N-ac 34.5 14 0.00031 29.9 0.2 41 46-86 116-160 (346)
33 cd03822 GT1_ecORF704_like This 33.9 84 0.0018 23.9 4.5 48 38-85 120-170 (366)
34 cd03794 GT1_wbuB_like This fam 33.8 92 0.002 23.6 4.6 41 45-86 158-203 (394)
35 PF03033 Glyco_transf_28: Glyc 33.0 1.7 3.6E-05 29.7 -4.8 20 38-57 119-138 (139)
36 PF10107 Endonuc_Holl: Endonuc 32.1 24 0.00052 25.8 1.0 59 65-125 90-155 (156)
37 TIGR03449 mycothiol_MshA UDP-N 31.0 1.2E+02 0.0026 24.2 5.1 39 47-86 158-202 (405)
38 cd03798 GT1_wlbH_like This fam 30.3 1.3E+02 0.0028 22.5 5.0 43 43-86 139-186 (377)
39 cd03801 GT1_YqgM_like This fam 29.0 1.6E+02 0.0035 21.8 5.3 44 42-85 134-182 (374)
40 cd03814 GT1_like_2 This family 24.3 1.7E+02 0.0038 22.0 4.7 44 43-86 135-180 (364)
41 TIGR00541 hisDCase_pyru histid 21.4 29 0.00062 27.8 -0.2 11 33-43 264-274 (310)
42 COG0381 WecB UDP-N-acetylgluco 21.1 34 0.00073 28.6 0.1 46 41-86 133-183 (383)
No 1
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.91 E-value=6.6e-25 Score=177.64 Aligned_cols=128 Identities=23% Similarity=0.298 Sum_probs=103.6
Q ss_pred CCCCCCCCCCcceEeeeccCCCCCCCCCCCCc------------------------------cccCC-------------
Q 045654 1 MESTSVPFAGYDFVSVPIIVPLFRPIFSPTKP------------------------------PSSLP------------- 37 (137)
Q Consensus 1 ~E~~~v~~~g~~~~~l~~~~~~~~~~~~~~~~------------------------------y~S~P------------- 37 (137)
+|.+++|++||+++.++.. +++| ...++++ |+|+|
T Consensus 41 ~e~~l~~~~g~~~~~~~~~-~l~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~ 118 (352)
T PRK12446 41 IEKTIIEKENIPYYSISSG-KLRR-YFDLKNIKDPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVL 118 (352)
T ss_pred cccccCcccCCcEEEEecc-CcCC-CchHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEE
Confidence 5788999999999999998 8876 2233221 99999
Q ss_pred ---CCChhhHHHHHHhhhcCeEEEcCccCcccccCCCceeEeccccccccccccChhhhhch-----------hcCCCCC
Q 045654 38 ---FDQVPGIANWVLSFFAHKVFVAFNSTTECFSRKDKCVACGNPVRLSLMTYVSKVVARLN-----------FFSRVEE 103 (137)
Q Consensus 38 ---qNa~pG~aNr~l~~~a~~v~~~f~~~~~~l~~~~k~v~tGnPVR~~~~~~~~~~~a~~~-----------l~g~lgS 103 (137)
||++||++||+++++|+++|++|+++.++++. +|+++||||||++|... +++++++. ++| ||
T Consensus 119 i~e~n~~~g~~nr~~~~~a~~v~~~f~~~~~~~~~-~k~~~tG~Pvr~~~~~~-~~~~~~~~~~l~~~~~~iLv~G--GS 194 (352)
T PRK12446 119 LHESDMTPGLANKIALRFASKIFVTFEEAAKHLPK-EKVIYTGSPVREEVLKG-NREKGLAFLGFSRKKPVITIMG--GS 194 (352)
T ss_pred EECCCCCccHHHHHHHHhhCEEEEEccchhhhCCC-CCeEEECCcCCcccccc-cchHHHHhcCCCCCCcEEEEEC--Cc
Confidence 99999999999999999999999999888987 88999999999998642 23333321 145 89
Q ss_pred CcHH---HHHHHHHHhc-CCCcEEEEcCCCCHHHh
Q 045654 104 GGRG---KCEDGMLLEK-HNLLIIWPTGIEAFKEM 134 (137)
Q Consensus 104 qGA~---~~v~~~l~~~-~~~~vi~~tG~~~~~~~ 134 (137)
|||. +++.++++.. .+++|+||||++++++.
T Consensus 195 ~Ga~~in~~~~~~l~~l~~~~~vv~~~G~~~~~~~ 229 (352)
T PRK12446 195 LGAKKINETVREALPELLLKYQIVHLCGKGNLDDS 229 (352)
T ss_pred cchHHHHHHHHHHHHhhccCcEEEEEeCCchHHHH
Confidence 9997 7788887763 46999999999877764
No 2
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=2.1e-23 Score=169.49 Aligned_cols=129 Identities=27% Similarity=0.271 Sum_probs=105.5
Q ss_pred CCCCCCCCCCcceEeeeccCCCCCCCCCCCCc------------------------------cccCC-------------
Q 045654 1 MESTSVPFAGYDFVSVPIIVPLFRPIFSPTKP------------------------------PSSLP------------- 37 (137)
Q Consensus 1 ~E~~~v~~~g~~~~~l~~~~~~~~~~~~~~~~------------------------------y~S~P------------- 37 (137)
+|..+++..+++++.|++. +++| ...+.++ |+|+|
T Consensus 41 ~e~~l~~~~~~~~~~I~~~-~~~~-~~~~~~~~~~~~~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ 118 (357)
T COG0707 41 LEAFLVKQYGIEFELIPSG-GLRR-KGSLKLLKAPFKLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVI 118 (357)
T ss_pred ceeeeccccCceEEEEecc-cccc-cCcHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEE
Confidence 5788999999999999999 9998 4444432 99999
Q ss_pred ---CCChhhHHHHHHhhhcCeEEEcCccCcccccCCCceeEeccccccccccccChh----hhh----c-hhcCCCCCCc
Q 045654 38 ---FDQVPGIANWVLSFFAHKVFVAFNSTTECFSRKDKCVACGNPVRLSLMTYVSKV----VAR----L-NFFSRVEEGG 105 (137)
Q Consensus 38 ---qNa~pG~aNr~l~~~a~~v~~~f~~~~~~l~~~~k~v~tGnPVR~~~~~~~~~~----~a~----~-~l~g~lgSqG 105 (137)
||++||+|||+++++|++|+++|++...+++. +++++||||||++|.. .... ..+ . .++| ||||
T Consensus 119 ihEqn~~~G~ank~~~~~a~~V~~~f~~~~~~~~~-~~~~~tG~Pvr~~~~~-~~~~~~~~~~~~~~~~ilV~G--GS~G 194 (357)
T COG0707 119 IHEQNAVPGLANKILSKFAKKVASAFPKLEAGVKP-ENVVVTGIPVRPEFEE-LPAAEVRKDGRLDKKTILVTG--GSQG 194 (357)
T ss_pred EEecCCCcchhHHHhHHhhceeeeccccccccCCC-CceEEecCcccHHhhc-cchhhhhhhccCCCcEEEEEC--Ccch
Confidence 99999999999999999999999987667776 7899999999999975 2111 111 1 1257 9999
Q ss_pred HH---HHHHHHHHhcC-CCcEEEEcCCCCHHHhh
Q 045654 106 RG---KCEDGMLLEKH-NLLIIWPTGIEAFKEME 135 (137)
Q Consensus 106 A~---~~v~~~l~~~~-~~~vi~~tG~~~~~~~~ 135 (137)
|. ++++++++... +++|+||||++++++++
T Consensus 195 a~~ln~~v~~~~~~l~~~~~v~~~~G~~~~~~~~ 228 (357)
T COG0707 195 AKALNDLVPEALAKLANRIQVIHQTGKNDLEELK 228 (357)
T ss_pred hHHHHHHHHHHHHHhhhCeEEEEEcCcchHHHHH
Confidence 98 89999888754 79999999999877664
No 3
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.53 E-value=2.3e-15 Score=123.84 Aligned_cols=130 Identities=15% Similarity=0.063 Sum_probs=96.0
Q ss_pred CCCCCCCCCCcceEeeeccCCCCCCCCCCCCc---------------------------------cc--------cCC--
Q 045654 1 MESTSVPFAGYDFVSVPIIVPLFRPIFSPTKP---------------------------------PS--------SLP-- 37 (137)
Q Consensus 1 ~E~~~v~~~g~~~~~l~~~~~~~~~~~~~~~~---------------------------------y~--------S~P-- 37 (137)
+|++.||..| |++.+|++ ||++. ..++++ |+ ..|
T Consensus 41 ~e~~~ip~~g-~~~~~~sg-g~~~~-~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v~~~aA~~~~~p~~ 117 (396)
T TIGR03492 41 YQNLGIPIIG-PTKELPSG-GFSYQ-SLRGLLRDLRAGLVGLTLGQWRALRKWAKKGDLIVAVGDIVPLLFAWLSGKPYA 117 (396)
T ss_pred HhhCCCceeC-CCCCCCCC-CccCC-CHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCEEEEECcHHHHHHHHHcCCCce
Confidence 5789999999 99999999 99873 222211 33 111
Q ss_pred ------CCCh----------------hhHH------HHHHhhhcCeEEEcCccCcccccCC-CceeEecccccccccccc
Q 045654 38 ------FDQV----------------PGIA------NWVLSFFAHKVFVAFNSTTECFSRK-DKCVACGNPVRLSLMTYV 88 (137)
Q Consensus 38 ------qNa~----------------pG~a------Nr~l~~~a~~v~~~f~~~~~~l~~~-~k~v~tGnPVR~~~~~~~ 88 (137)
||++ ||++ |++++++|+.+|++|+.+.++|.+. .|+++||||+++++....
T Consensus 118 ~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~e~n~l~~~~a~~v~~~~~~t~~~l~~~g~k~~~vGnPv~d~l~~~~ 197 (396)
T TIGR03492 118 FVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPWERWLMRSRRCLAVFVRDRLTARDLRRQGVRASYLGNPMMDGLEPPE 197 (396)
T ss_pred EEEeeccceeecCCCCCccchhhhccCCCccCHHHHHHhhchhhCEEeCCCHHHHHHHHHCCCeEEEeCcCHHhcCcccc
Confidence 9999 9999 9999999999999999999999642 479999999999975321
Q ss_pred Ch---hhh-hchhcCCCCCCcHH-----HHHHHHHHhc---CCCcEEEEc-CCCCHHHhh
Q 045654 89 SK---VVA-RLNFFSRVEEGGRG-----KCEDGMLLEK---HNLLIIWPT-GIEAFKEME 135 (137)
Q Consensus 89 ~~---~~a-~~~l~g~lgSqGA~-----~~v~~~l~~~---~~~~vi~~t-G~~~~~~~~ 135 (137)
.. ++. +-.+++ ||+|++ ..+.++++.+ .+++++|+| |..+.++++
T Consensus 198 ~~~l~~~~~~lllLp--GSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~ 255 (396)
T TIGR03492 198 RKPLLTGRFRIALLP--GSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQ 255 (396)
T ss_pred ccccCCCCCEEEEEC--CCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHH
Confidence 11 111 112346 899997 3666666653 489999999 777676654
No 4
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.99 E-value=8.5e-11 Score=96.28 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=52.8
Q ss_pred CCChhhHHHHHHhhhcCeEEEcCccCcccccCC-CceeEeccccccccccc-cChhhhhchh-----------cCCCCCC
Q 045654 38 FDQVPGIANWVLSFFAHKVFVAFNSTTECFSRK-DKCVACGNPVRLSLMTY-VSKVVARLNF-----------FSRVEEG 104 (137)
Q Consensus 38 qNa~pG~aNr~l~~~a~~v~~~f~~~~~~l~~~-~k~v~tGnPVR~~~~~~-~~~~~a~~~l-----------~g~lgSq 104 (137)
||++.|.+||+++++||++++.|+.+.++++.. .++.+||||+|+++... .++.++++.+ ++ ||+
T Consensus 124 ~waw~~~~~r~l~~~~d~v~~~~~~e~~~~~~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~--GSR 201 (385)
T TIGR00215 124 VWAWRKWRAKKIEKATDFLLAILPFEKAFYQKKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLP--GSR 201 (385)
T ss_pred HhhcCcchHHHHHHHHhHhhccCCCcHHHHHhcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEEC--CCC
Confidence 899999999999999999999999998887631 47889999999887431 2344444322 24 799
Q ss_pred cHH
Q 045654 105 GRG 107 (137)
Q Consensus 105 GA~ 107 (137)
|+.
T Consensus 202 ~ae 204 (385)
T TIGR00215 202 GSE 204 (385)
T ss_pred HHH
Confidence 986
No 5
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=98.06 E-value=2.8e-06 Score=69.52 Aligned_cols=85 Identities=13% Similarity=0.123 Sum_probs=57.8
Q ss_pred hHHHHHHhhhcCeEEEcCccCcccccCC----CceeEeccccccccccccChhhhhchh-----------cCCCCCCcH-
Q 045654 43 GIANWVLSFFAHKVFVAFNSTTECFSRK----DKCVACGNPVRLSLMTYVSKVVARLNF-----------FSRVEEGGR- 106 (137)
Q Consensus 43 G~aNr~l~~~a~~v~~~f~~~~~~l~~~----~k~v~tGnPVR~~~~~~~~~~~a~~~l-----------~g~lgSqGA- 106 (137)
...++|+.+.+|.++++++++.+++.+. +|+.++|+||++.|....++.+.++.+ ++ |++|.
T Consensus 138 ~~~~~w~~~~~d~~~v~s~~~~~~l~~~gi~~~ki~v~GiPv~~~f~~~~~~~~~~~~~~l~~~~~~ilv~~--G~lg~~ 215 (391)
T PRK13608 138 RLHKNWITPYSTRYYVATKETKQDFIDVGIDPSTVKVTGIPIDNKFETPIDQKQWLIDNNLDPDKQTILMSA--GAFGVS 215 (391)
T ss_pred CcccccccCCCCEEEECCHHHHHHHHHcCCCHHHEEEECeecChHhcccccHHHHHHHcCCCCCCCEEEEEC--CCcccc
Confidence 3567899999999999999887766311 679999999999886433333333222 23 67773
Q ss_pred H---HHHHHHHHhcCCCcEEEEcCCC
Q 045654 107 G---KCEDGMLLEKHNLLIIWPTGIE 129 (137)
Q Consensus 107 ~---~~v~~~l~~~~~~~vi~~tG~~ 129 (137)
. +++..++....+++++++||..
T Consensus 216 k~~~~li~~~~~~~~~~~~vvv~G~~ 241 (391)
T PRK13608 216 KGFDTMITDILAKSANAQVVMICGKS 241 (391)
T ss_pred hhHHHHHHHHHhcCCCceEEEEcCCC
Confidence 3 4444333334578999999975
No 6
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.02 E-value=9.9e-06 Score=65.20 Aligned_cols=92 Identities=12% Similarity=0.082 Sum_probs=60.4
Q ss_pred ChhhHHHHHHhhhcCeEEEcCccCcccccCC-CceeEeccccccccccccChhhhhchh-----------cCCCCCCcHH
Q 045654 40 QVPGIANWVLSFFAHKVFVAFNSTTECFSRK-DKCVACGNPVRLSLMTYVSKVVARLNF-----------FSRVEEGGRG 107 (137)
Q Consensus 40 a~pG~aNr~l~~~a~~v~~~f~~~~~~l~~~-~k~v~tGnPVR~~~~~~~~~~~a~~~l-----------~g~lgSqGA~ 107 (137)
..+|++|++ .+.+|.+++.++.+.+++.+. .+++++|||++..+....++.+.+..+ ++ ||+|+.
T Consensus 123 ~~~~~~~~~-~~~~d~i~~~~~~~~~~~~~~g~~~~~~G~p~~~~~~~~~~~~~~~~~l~~~~~~~~il~~~--gsr~~~ 199 (380)
T PRK00025 123 WRQGRAFKI-AKATDHVLALFPFEAAFYDKLGVPVTFVGHPLADAIPLLPDRAAARARLGLDPDARVLALLP--GSRGQE 199 (380)
T ss_pred cCchHHHHH-HHHHhhheeCCccCHHHHHhcCCCeEEECcCHHHhcccccChHHHHHHcCCCCCCCEEEEEC--CCCHHH
Confidence 379999986 899999999999988887531 358899999998653212232333222 23 688875
Q ss_pred -----HHHHHHHHh----cCCCcEEEEcC-CCCHHHh
Q 045654 108 -----KCEDGMLLE----KHNLLIIWPTG-IEAFKEM 134 (137)
Q Consensus 108 -----~~v~~~l~~----~~~~~vi~~tG-~~~~~~~ 134 (137)
+.+.++++. ..+++++|++| ....+++
T Consensus 200 ~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~ 236 (380)
T PRK00025 200 IKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQI 236 (380)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHH
Confidence 333444433 24689999988 4434444
No 7
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=97.86 E-value=9.5e-06 Score=65.55 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=57.4
Q ss_pred hhHHHHHHhhhcCeEEEcCccCcccc-----cCCCceeEeccccccccccccChhhhhchh-----------cCCCCCCc
Q 045654 42 PGIANWVLSFFAHKVFVAFNSTTECF-----SRKDKCVACGNPVRLSLMTYVSKVVARLNF-----------FSRVEEGG 105 (137)
Q Consensus 42 pG~aNr~l~~~a~~v~~~f~~~~~~l-----~~~~k~v~tGnPVR~~~~~~~~~~~a~~~l-----------~g~lgSqG 105 (137)
.|..++|+.+.+|.+++.++.+.+.+ +. +|+.++|+|++..|....++...++.+ ++ |++|
T Consensus 137 ~~~~~~~~~~~ad~i~~~s~~~~~~l~~~gi~~-~ki~v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~--G~~~ 213 (380)
T PRK13609 137 FCLHKIWVHREVDRYFVATDHVKKVLVDIGVPP-EQVVETGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMA--GAHG 213 (380)
T ss_pred CCCCcccccCCCCEEEECCHHHHHHHHHcCCCh-hHEEEECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEc--CCCC
Confidence 46788999999999999999887665 33 678999999998775432333233222 23 6776
Q ss_pred HH---HHHHHHHHhcCCCcEEEEcCCC
Q 045654 106 RG---KCEDGMLLEKHNLLIIWPTGIE 129 (137)
Q Consensus 106 A~---~~v~~~l~~~~~~~vi~~tG~~ 129 (137)
.. ..+.+.+....+++++++||.+
T Consensus 214 ~~k~~~~li~~l~~~~~~~~viv~G~~ 240 (380)
T PRK13609 214 VLGNVKELCQSLMSVPDLQVVVVCGKN 240 (380)
T ss_pred CCcCHHHHHHHHhhCCCcEEEEEeCCC
Confidence 54 2333333334578999999964
No 8
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.73 E-value=8.5e-05 Score=58.77 Aligned_cols=95 Identities=31% Similarity=0.461 Sum_probs=64.7
Q ss_pred CCChhhHHHHHHhhhcCeEEEcCccCcccccCCCceeEeccccccccccccCh-------hhhhch-hcCCCCCCcHH--
Q 045654 38 FDQVPGIANWVLSFFAHKVFVAFNSTTECFSRKDKCVACGNPVRLSLMTYVSK-------VVARLN-FFSRVEEGGRG-- 107 (137)
Q Consensus 38 qNa~pG~aNr~l~~~a~~v~~~f~~~~~~l~~~~k~v~tGnPVR~~~~~~~~~-------~~a~~~-l~g~lgSqGA~-- 107 (137)
+|..++..|+++.+++|.|++.++...++++. .|+.++|||+..++....+. ++.... +.+ |+.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~-~~~~~i~n~v~~~~~~~~~~~~~~~~~~~~~~i~~~~--g~~~~~~~ 196 (350)
T cd03785 120 QNAVPGLANRLLARFADRVALSFPETAKYFPK-DKAVVTGNPVREEILALDRERARLGLRPGKPTLLVFG--GSQGARAI 196 (350)
T ss_pred CCCCccHHHHHHHHhhCEEEEcchhhhhcCCC-CcEEEECCCCchHHhhhhhhHHhcCCCCCCeEEEEEC--CcHhHHHH
Confidence 88899999999999999999999888776666 78999999999876542111 000001 112 444443
Q ss_pred -HHHHHHHHhc--CCCcEEEEcCCCCHHHhh
Q 045654 108 -KCEDGMLLEK--HNLLIIWPTGIEAFKEME 135 (137)
Q Consensus 108 -~~v~~~l~~~--~~~~vi~~tG~~~~~~~~ 135 (137)
+.+.+++... .++++++++|....++++
T Consensus 197 ~~~l~~a~~~l~~~~~~~~~i~G~g~~~~l~ 227 (350)
T cd03785 197 NEAVPEALAELLRKRLQVIHQTGKGDLEEVK 227 (350)
T ss_pred HHHHHHHHHHhhccCeEEEEEcCCccHHHHH
Confidence 4555555543 467788899987666554
No 9
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=97.50 E-value=0.00011 Score=59.92 Aligned_cols=82 Identities=13% Similarity=0.055 Sum_probs=54.8
Q ss_pred HHHHHhhhcCeEEEcCccCcccc-----cCCCceeEeccccccccccc-cChhhhhchh-----------cCCCCCCcHH
Q 045654 45 ANWVLSFFAHKVFVAFNSTTECF-----SRKDKCVACGNPVRLSLMTY-VSKVVARLNF-----------FSRVEEGGRG 107 (137)
Q Consensus 45 aNr~l~~~a~~v~~~f~~~~~~l-----~~~~k~v~tGnPVR~~~~~~-~~~~~a~~~l-----------~g~lgSqGA~ 107 (137)
-.+|+.+.+|++++..+++.+.+ +. +|++++|+||+++|... .++++.++.+ .| |+.|..
T Consensus 143 ~~~w~~~~~d~~~~~s~~~~~~l~~~g~~~-~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~G--g~~g~~ 219 (382)
T PLN02605 143 HPTWFHKGVTRCFCPSEEVAKRALKRGLEP-SQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMG--GGEGMG 219 (382)
T ss_pred CcccccCCCCEEEECCHHHHHHHHHcCCCH-HHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEEC--CCcccc
Confidence 46889999999999998876654 34 78999999999987542 2334444443 12 455543
Q ss_pred ---HHHHHHHHh-------cCCCcEEEEcCCC
Q 045654 108 ---KCEDGMLLE-------KHNLLIIWPTGIE 129 (137)
Q Consensus 108 ---~~v~~~l~~-------~~~~~vi~~tG~~ 129 (137)
+++..+... ..+.+++++||++
T Consensus 220 ~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~ 251 (382)
T PLN02605 220 PLEETARALGDSLYDKNLGKPIGQVVVICGRN 251 (382)
T ss_pred cHHHHHHHHHHhhccccccCCCceEEEEECCC
Confidence 444444322 2457899999976
No 10
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=97.45 E-value=0.00033 Score=55.94 Aligned_cols=95 Identities=28% Similarity=0.357 Sum_probs=61.5
Q ss_pred CCChhhHHHHHHhhhcCeEEEcCccCcccccCCCceeEeccccccccccccChhhh-------hch-hcCCCCCCcHH--
Q 045654 38 FDQVPGIANWVLSFFAHKVFVAFNSTTECFSRKDKCVACGNPVRLSLMTYVSKVVA-------RLN-FFSRVEEGGRG-- 107 (137)
Q Consensus 38 qNa~pG~aNr~l~~~a~~v~~~f~~~~~~l~~~~k~v~tGnPVR~~~~~~~~~~~a-------~~~-l~g~lgSqGA~-- 107 (137)
++..+++.|+|+.+.+|.+++.+++.....+. +|+.++||||+.++.......+. ... ++| |+.|..
T Consensus 122 ~~~~~~~~~r~~~~~~d~ii~~~~~~~~~~~~-~~i~vi~n~v~~~~~~~~~~~~~~~~~~~~~~i~~~g--g~~~~~~~ 198 (357)
T PRK00726 122 QNAVPGLANKLLARFAKKVATAFPGAFPEFFK-PKAVVTGNPVREEILALAAPPARLAGREGKPTLLVVG--GSQGARVL 198 (357)
T ss_pred CCCCccHHHHHHHHHhchheECchhhhhccCC-CCEEEECCCCChHhhcccchhhhccCCCCCeEEEEEC--CcHhHHHH
Confidence 77889999999999999999998765333455 78999999999876442111100 000 123 444443
Q ss_pred -HHHHHHHHhcC-CCcEEEEcCCCCHHHhh
Q 045654 108 -KCEDGMLLEKH-NLLIIWPTGIEAFKEME 135 (137)
Q Consensus 108 -~~v~~~l~~~~-~~~vi~~tG~~~~~~~~ 135 (137)
+.+.+++.... ...+++++|....+++.
T Consensus 199 ~~~l~~a~~~~~~~~~~~~~~G~g~~~~~~ 228 (357)
T PRK00726 199 NEAVPEALALLPEALQVIHQTGKGDLEEVR 228 (357)
T ss_pred HHHHHHHHHHhhhCcEEEEEcCCCcHHHHH
Confidence 45545555432 23678899988766553
No 11
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=97.27 E-value=0.00076 Score=53.30 Aligned_cols=92 Identities=25% Similarity=0.389 Sum_probs=60.1
Q ss_pred CCChhhHHHHHHhhhcCeEEEcCccCcccccCCCceeEeccccccccccccChh-------hhhch-hcCCCCCCcHH--
Q 045654 38 FDQVPGIANWVLSFFAHKVFVAFNSTTECFSRKDKCVACGNPVRLSLMTYVSKV-------VARLN-FFSRVEEGGRG-- 107 (137)
Q Consensus 38 qNa~pG~aNr~l~~~a~~v~~~f~~~~~~l~~~~k~v~tGnPVR~~~~~~~~~~-------~a~~~-l~g~lgSqGA~-- 107 (137)
++..+++.++|+.+.+|.+++.+++..+++ +..++||||...+....... +.... +.| |+.|..
T Consensus 121 ~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~----~~~~i~n~v~~~~~~~~~~~~~~~~~~~~~~i~~~g--g~~~~~~~ 194 (348)
T TIGR01133 121 QNAVPGLTNKLLSRFAKKVLISFPGAKDHF----EAVLVGNPVRQEIRSLPVPRERFGLREGKPTILVLG--GSQGAKIL 194 (348)
T ss_pred CCCCccHHHHHHHHHhCeeEECchhHhhcC----CceEEcCCcCHHHhcccchhhhcCCCCCCeEEEEEC--CchhHHHH
Confidence 778899999999999999999999876655 25789999997764321110 01111 123 466654
Q ss_pred -HHHHHHHHhc--CCCcEEEEcCCCCHHHhh
Q 045654 108 -KCEDGMLLEK--HNLLIIWPTGIEAFKEME 135 (137)
Q Consensus 108 -~~v~~~l~~~--~~~~vi~~tG~~~~~~~~ 135 (137)
+.+.+++... .++++++++|....++++
T Consensus 195 ~~~l~~a~~~l~~~~~~~~~~~g~~~~~~l~ 225 (348)
T TIGR01133 195 NELVPKALAKLAEKGIQIVHQTGKNDLEKVK 225 (348)
T ss_pred HHHHHHHHHHHhhcCcEEEEECCcchHHHHH
Confidence 4444555442 357788899987655543
No 12
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.19 E-value=0.00046 Score=56.36 Aligned_cols=89 Identities=10% Similarity=0.133 Sum_probs=57.3
Q ss_pred hhHHHHHHhhhcCeEEEcCccCcccccCCCceeEeccccccccccccC--hhhhhchhcCCCCCCcHH--HHHH---HHH
Q 045654 42 PGIANWVLSFFAHKVFVAFNSTTECFSRKDKCVACGNPVRLSLMTYVS--KVVARLNFFSRVEEGGRG--KCED---GML 114 (137)
Q Consensus 42 pG~aNr~l~~~a~~v~~~f~~~~~~l~~~~k~v~tGnPVR~~~~~~~~--~~~a~~~l~g~lgSqGA~--~~v~---~~l 114 (137)
+|++. .+.+++|++++.|+--.+++ + .++.++|+|+++++..... ++...-.+++ ||+|++ +.++ +++
T Consensus 118 ~~R~~-~i~k~~d~vl~ifPFE~~~y-g-~~~~~VGhPl~d~~~~~~~~~~~~~~I~llP--GSR~~Ei~~llP~~~~aa 192 (347)
T PRK14089 118 KGRAK-ILEKYCDFLASILPFEVQFY-Q-SKATYVGHPLLDEIKEFKKDLDKEGTIAFMP--GSRKSEIKRLMPIFKELA 192 (347)
T ss_pred cchHH-HHHHHHhhhhccCCCCHHHh-C-CCCEEECCcHHHhhhhhhhhcCCCCEEEEEC--CCCHHHHHHHHHHHHHHH
Confidence 45665 56999999999887555555 4 6788999999987642100 0111112346 899997 5555 555
Q ss_pred Hhc-CCCcEEEEcCCCCHHHhh
Q 045654 115 LEK-HNLLIIWPTGIEAFKEME 135 (137)
Q Consensus 115 ~~~-~~~~vi~~tG~~~~~~~~ 135 (137)
..+ ++..+.|+++..+.+.++
T Consensus 193 ~~L~~~~~~~~i~~a~~~~~i~ 214 (347)
T PRK14089 193 KKLEGKEKILVVPSFFKGKDLK 214 (347)
T ss_pred HHHhhcCcEEEEeCCCcHHHHH
Confidence 543 344788888887665443
No 13
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=95.07 E-value=0.037 Score=43.53 Aligned_cols=81 Identities=14% Similarity=0.065 Sum_probs=46.9
Q ss_pred hcCeEEEcCccCcc--c---ccCCCceeEecc---ccccccccccChhhh----hchh--cCCCCCCcHH--HHHHHHHH
Q 045654 52 FAHKVFVAFNSTTE--C---FSRKDKCVACGN---PVRLSLMTYVSKVVA----RLNF--FSRVEEGGRG--KCEDGMLL 115 (137)
Q Consensus 52 ~a~~v~~~f~~~~~--~---l~~~~k~v~tGn---PVR~~~~~~~~~~~a----~~~l--~g~lgSqGA~--~~v~~~l~ 115 (137)
.||.++.+-..+.. | .+. .+.+++|. |+|++|.....+... +..| +| ||.++. ..+.+++.
T Consensus 118 ~~D~vin~~~~~~~~~y~~~~~~-~~~~l~G~~Y~~lr~eF~~~~~~~~~~~~~~~iLi~~G--G~d~~~~~~~~l~~l~ 194 (279)
T TIGR03590 118 DCDLLLDQNLGADASDYQGLVPA-NCRLLLGPSYALLREEFYQLATANKRRKPLRRVLVSFG--GADPDNLTLKLLSALA 194 (279)
T ss_pred CCCEEEeCCCCcCHhHhcccCcC-CCeEEecchHHhhhHHHHHhhHhhhcccccCeEEEEeC--CcCCcCHHHHHHHHHh
Confidence 67777766543221 1 233 56789999 999999653221111 1222 46 666654 34444444
Q ss_pred h-cCCCcEEEEcCCC--CHHHhh
Q 045654 116 E-KHNLLIIWPTGIE--AFKEME 135 (137)
Q Consensus 116 ~-~~~~~vi~~tG~~--~~~~~~ 135 (137)
. ..++++.+++|+. +.++++
T Consensus 195 ~~~~~~~i~vv~G~~~~~~~~l~ 217 (279)
T TIGR03590 195 ESQINISITLVTGSSNPNLDELK 217 (279)
T ss_pred ccccCceEEEEECCCCcCHHHHH
Confidence 4 3578999999974 355443
No 14
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=94.30 E-value=0.16 Score=42.09 Aligned_cols=93 Identities=10% Similarity=0.144 Sum_probs=61.6
Q ss_pred hhHHHHHHhhhcCeEEEcCccCcccccCC-CceeEeccccccccccccChhhhhchhcCC---------CCCCcHH----
Q 045654 42 PGIANWVLSFFAHKVFVAFNSTTECFSRK-DKCVACGNPVRLSLMTYVSKVVARLNFFSR---------VEEGGRG---- 107 (137)
Q Consensus 42 pG~aNr~l~~~a~~v~~~f~~~~~~l~~~-~k~v~tGnPVR~~~~~~~~~~~a~~~l~g~---------lgSqGA~---- 107 (137)
|+++- -+.+++|.+++=||--.+++.+. ..++++|.|.-+++.-..+++.+|+.+.-+ .||.+++
T Consensus 127 ~~Ra~-~i~~~~D~lLailPFE~~~y~k~g~~~~yVGHpl~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl 205 (381)
T COG0763 127 PKRAV-KIAKYVDHLLAILPFEPAFYDKFGLPCTYVGHPLADEIPLLPDREAAREKLGIDADEKTLALLPGSRRSEIRRL 205 (381)
T ss_pred hhhHH-HHHHHhhHeeeecCCCHHHHHhcCCCeEEeCChhhhhccccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHH
Confidence 45543 45789999988777666666431 348999999999874335677777776111 2798886
Q ss_pred -----HHHHHHHHhcCCCcEEEEcCCCCHHHhh
Q 045654 108 -----KCEDGMLLEKHNLLIIWPTGIEAFKEME 135 (137)
Q Consensus 108 -----~~v~~~l~~~~~~~vi~~tG~~~~~~~~ 135 (137)
+++.++....++.+++.-+-...++..+
T Consensus 206 ~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~~~~ 238 (381)
T COG0763 206 LPPFVQAAQELKARYPDLKFVLPLVNAKYRRII 238 (381)
T ss_pred HHHHHHHHHHHHhhCCCceEEEecCcHHHHHHH
Confidence 3333333335688888888777665543
No 15
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=94.11 E-value=0.014 Score=42.44 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=29.0
Q ss_pred HHHhhhcCeEEEcCccCcccccCC----CceeEecccc
Q 045654 47 WVLSFFAHKVFVAFNSTTECFSRK----DKCVACGNPV 80 (137)
Q Consensus 47 r~l~~~a~~v~~~f~~~~~~l~~~----~k~v~tGnPV 80 (137)
.|+.+.+|.+||+.+++++.+.++ +|+.+||+||
T Consensus 132 ~W~~~~~D~y~Vase~~~~~l~~~Gi~~~~I~vtGiPV 169 (169)
T PF06925_consen 132 FWIHPGVDRYFVASEEVKEELIERGIPPERIHVTGIPV 169 (169)
T ss_pred CeecCCCCEEEECCHHHHHHHHHcCCChhHEEEeCccC
Confidence 478999999999999998777421 7899999997
No 16
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=90.44 E-value=0.92 Score=37.56 Aligned_cols=91 Identities=15% Similarity=0.243 Sum_probs=56.8
Q ss_pred hhHHHHHHhhhcCeEEEcCccCcccccCC-CceeEeccccccccccccChhhhhchhcCC--------CCCCcHH-----
Q 045654 42 PGIANWVLSFFAHKVFVAFNSTTECFSRK-DKCVACGNPVRLSLMTYVSKVVARLNFFSR--------VEEGGRG----- 107 (137)
Q Consensus 42 pG~aNr~l~~~a~~v~~~f~~~~~~l~~~-~k~v~tGnPVR~~~~~~~~~~~a~~~l~g~--------lgSqGA~----- 107 (137)
+|++. .+.+.+|.+++=||--.+++.+. -++.++|+|+-+.+....++.++++.++.+ -||.-++
T Consensus 124 ~~R~~-~i~~~~D~ll~ifPFE~~~y~~~g~~~~~VGHPl~d~~~~~~~~~~~~~~~l~~~~~iIaLLPGSR~~EI~rll 202 (373)
T PF02684_consen 124 PGRAK-KIKKYVDHLLVIFPFEPEFYKKHGVPVTYVGHPLLDEVKPEPDRAEAREKLLDPDKPIIALLPGSRKSEIKRLL 202 (373)
T ss_pred ccHHH-HHHHHHhheeECCcccHHHHhccCCCeEEECCcchhhhccCCCHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHH
Confidence 56764 45899999999988777777542 468999999999875544444444433111 1676665
Q ss_pred ----HHHHHHHHhcCCCcEEEEcCCCCHHH
Q 045654 108 ----KCEDGMLLEKHNLLIIWPTGIEAFKE 133 (137)
Q Consensus 108 ----~~v~~~l~~~~~~~vi~~tG~~~~~~ 133 (137)
+++..+.....+++++..+-+...++
T Consensus 203 P~~l~aa~~l~~~~p~l~fvvp~a~~~~~~ 232 (373)
T PF02684_consen 203 PIFLEAAKLLKKQRPDLQFVVPVAPEVHEE 232 (373)
T ss_pred HHHHHHHHHHHHhCCCeEEEEecCCHHHHH
Confidence 22222222235788887776655544
No 17
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=81.84 E-value=3.9 Score=34.11 Aligned_cols=83 Identities=10% Similarity=-0.013 Sum_probs=50.0
Q ss_pred HHHHhhhcCeEEEcCccCcccccC-----CCceeEecccccccccccc-Chhhhhchhc-C---C-----CCCCcHH---
Q 045654 46 NWVLSFFAHKVFVAFNSTTECFSR-----KDKCVACGNPVRLSLMTYV-SKVVARLNFF-S---R-----VEEGGRG--- 107 (137)
Q Consensus 46 Nr~l~~~a~~v~~~f~~~~~~l~~-----~~k~v~tGnPVR~~~~~~~-~~~~a~~~l~-g---~-----lgSqGA~--- 107 (137)
++++.+.+|.+++..+...+.+.. .+|+.++.|.|..+..... +..+.+..+. + + .|+.|..
T Consensus 199 ~r~~~~~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~ 278 (465)
T PLN02871 199 IRFLHRAADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGAEKNL 278 (465)
T ss_pred HHHHHhhCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeEEEEeCCCchhhhH
Confidence 678889999999998776655531 1578899999997644321 1112221110 0 0 2566665
Q ss_pred HHHHHHHHhcCCCcEEEEcCCC
Q 045654 108 KCEDGMLLEKHNLLIIWPTGIE 129 (137)
Q Consensus 108 ~~v~~~l~~~~~~~vi~~tG~~ 129 (137)
+.+.+++....++++++ +|..
T Consensus 279 ~~li~a~~~~~~~~l~i-vG~G 299 (465)
T PLN02871 279 DFLKRVMERLPGARLAF-VGDG 299 (465)
T ss_pred HHHHHHHHhCCCcEEEE-EeCC
Confidence 66666666656777664 4543
No 18
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=81.19 E-value=0.45 Score=37.69 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=34.5
Q ss_pred hhhHHHHH-HhhhcCeEEEcCccCcccccCC----CceeEeccccccccc
Q 045654 41 VPGIANWV-LSFFAHKVFVAFNSTTECFSRK----DKCVACGNPVRLSLM 85 (137)
Q Consensus 41 ~pG~aNr~-l~~~a~~v~~~f~~~~~~l~~~----~k~v~tGnPVR~~~~ 85 (137)
.|...+|+ +.+.+|.+|+..+..++++.+. +|+.++|||+.+.+.
T Consensus 129 ~~~~~~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~kI~vign~v~d~~~ 178 (363)
T cd03786 129 MPDEENRHAIDKLSDLHFAPTEEARRNLLQEGEPPERIFVVGNTMIDALL 178 (363)
T ss_pred CCchHHHHHHHHHhhhccCCCHHHHHHHHHcCCCcccEEEECchHHHHHH
Confidence 35666776 6899999999999888776321 679999999876553
No 19
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=78.93 E-value=6.1 Score=34.91 Aligned_cols=55 Identities=11% Similarity=0.211 Sum_probs=39.7
Q ss_pred hhHHHHHHhhhcCeEEEcCccCcccccCC-CceeEeccccccccccccChhhhhchh
Q 045654 42 PGIANWVLSFFAHKVFVAFNSTTECFSRK-DKCVACGNPVRLSLMTYVSKVVARLNF 97 (137)
Q Consensus 42 pG~aNr~l~~~a~~v~~~f~~~~~~l~~~-~k~v~tGnPVR~~~~~~~~~~~a~~~l 97 (137)
+|++.+ +.+.+|.+++=||--.+++.+. -++.++|+|.-+++....+++++++.+
T Consensus 352 ~~Rikk-i~k~vD~ll~IfPFE~~~y~~~gv~v~yVGHPL~d~i~~~~~~~~~r~~l 407 (608)
T PRK01021 352 PKRKTI-LEKYLDLLLLILPFEQNLFKDSPLRTVYLGHPLVETISSFSPNLSWKEQL 407 (608)
T ss_pred cchHHH-HHHHhhhheecCccCHHHHHhcCCCeEEECCcHHhhcccCCCHHHHHHHc
Confidence 567744 5899999999998777777542 469999999998864333555555554
No 20
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=74.39 E-value=1.3 Score=36.10 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=36.9
Q ss_pred hhhHHHHHHhhhcCeEEEcCccCccccc-----CCCceeEecccccccccc
Q 045654 41 VPGIANWVLSFFAHKVFVAFNSTTECFS-----RKDKCVACGNPVRLSLMT 86 (137)
Q Consensus 41 ~pG~aNr~l~~~a~~v~~~f~~~~~~l~-----~~~k~v~tGnPVR~~~~~ 86 (137)
..-..+++.++.|+..|++.+.+.+.+. . .++++||||+.+.+..
T Consensus 133 ~eE~~r~~i~~la~l~f~~t~~~~~~L~~eg~~~-~~i~~tG~~~iD~l~~ 182 (365)
T TIGR03568 133 IDESIRHAITKLSHLHFVATEEYRQRVIQMGEDP-DRVFNVGSPGLDNILS 182 (365)
T ss_pred chHHHHHHHHHHHhhccCCCHHHHHHHHHcCCCC-CcEEEECCcHHHHHHh
Confidence 4445688889999999999999888773 3 5799999999998754
No 21
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=66.11 E-value=2.8 Score=33.23 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=28.4
Q ss_pred CCCh--hhHHHHHHhhhcCeEEEcCccCcccc--cCCCceeEeccc
Q 045654 38 FDQV--PGIANWVLSFFAHKVFVAFNSTTECF--SRKDKCVACGNP 79 (137)
Q Consensus 38 qNa~--pG~aNr~l~~~a~~v~~~f~~~~~~l--~~~~k~v~tGnP 79 (137)
||++ ||.. +.++.++++++.+|+++.+++ +. -+...+|+|
T Consensus 122 q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p 165 (321)
T TIGR00661 122 QNYTRYPLKT-DLIVYPTMAALRIFNERCERFIVPD-YPFPYTICP 165 (321)
T ss_pred chhhcCCccc-chhHHHHHHHHHHhccccceEeeec-CCCCCCCCc
Confidence 8877 8877 667777778888887776666 33 345557777
No 22
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=57.85 E-value=56 Score=25.75 Aligned_cols=44 Identities=14% Similarity=-0.015 Sum_probs=31.3
Q ss_pred hhHHHHHHhhhcCeEEEcCccCcccc-------cCCCceeEecccccccccc
Q 045654 42 PGIANWVLSFFAHKVFVAFNSTTECF-------SRKDKCVACGNPVRLSLMT 86 (137)
Q Consensus 42 pG~aNr~l~~~a~~v~~~f~~~~~~l-------~~~~k~v~tGnPVR~~~~~ 86 (137)
.....++..+.+|.+++..+...+.+ +. +|+.++.|++..+...
T Consensus 134 ~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~-~~i~vi~ng~~~~~~~ 184 (388)
T TIGR02149 134 SSWAEKTAIEAADRVIAVSGGMREDILKYYPDLDP-EKVHVIYNGIDTKEYK 184 (388)
T ss_pred HHHHHHHHHhhCCEEEEccHHHHHHHHHHcCCCCc-ceEEEecCCCChhhcC
Confidence 45567788899999988876554433 23 5688899999876544
No 23
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=53.09 E-value=15 Score=26.98 Aligned_cols=78 Identities=18% Similarity=0.145 Sum_probs=47.6
Q ss_pred hhhHHHHHHhhhcCeEEEcCccCcccccCCCceeEeccccccccccccChhhhhchhcCCCCCC--cH--H--HHHHHHH
Q 045654 41 VPGIANWVLSFFAHKVFVAFNSTTECFSRKDKCVACGNPVRLSLMTYVSKVVARLNFFSRVEEG--GR--G--KCEDGML 114 (137)
Q Consensus 41 ~pG~aNr~l~~~a~~v~~~f~~~~~~l~~~~k~v~tGnPVR~~~~~~~~~~~a~~~l~g~lgSq--GA--~--~~v~~~l 114 (137)
+.|++.--|+++- + ..+|-|+ + +-+.|.||.=-++...|..+....+|-+..|+ |+ . +++.++.
T Consensus 87 i~GrVtEqlaPff-------p-~f~ynPk-D-~RfIGTPvD~iVFdGLs~G~i~~IvFvEVKtGkt~~LseREk~Vr~ai 156 (175)
T COG4741 87 ILGRVTEQLAPFF-------P-EFKYNPK-D-ARFIGTPVDFIVFDGLSEGNIESIVFVEVKTGKTSSLSEREKAVRDAI 156 (175)
T ss_pred HhhhhHhhhcccc-------c-CCCcCCc-c-ceeeCCCceEEEEcCCCcCceeEEEEEEEecCCcCCccHHHHHHHHHH
Confidence 4666666666542 2 2334454 3 88999999987776655544444433212222 22 1 8888888
Q ss_pred Hhc-CCCcEEEEcCC
Q 045654 115 LEK-HNLLIIWPTGI 128 (137)
Q Consensus 115 ~~~-~~~~vi~~tG~ 128 (137)
+.- -.|.++|+-|.
T Consensus 157 ~~~rVs~ei~~~r~a 171 (175)
T COG4741 157 ENGRVSWEIYHIRGA 171 (175)
T ss_pred hcCceEEEEEeeccc
Confidence 763 47889998884
No 24
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=49.24 E-value=13 Score=27.26 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=27.6
Q ss_pred hhHHHHHHhhhcCeEEEcCccCcccccCCCceeEec
Q 045654 42 PGIANWVLSFFAHKVFVAFNSTTECFSRKDKCVACG 77 (137)
Q Consensus 42 pG~aNr~l~~~a~~v~~~f~~~~~~l~~~~k~v~tG 77 (137)
|-+|=|++.++||..++-+|+-.+..|+ ..+.|
T Consensus 136 lSlTGklly~~aD~f~VQW~~l~~~yp~---a~y~G 168 (170)
T PF08660_consen 136 LSLTGKLLYPFADRFIVQWEELAEKYPR---AIYVG 168 (170)
T ss_pred CchHHHHHHHhCCEEEEcCHHHHhHCCC---CEEEe
Confidence 7889999999999999999998777654 55555
No 25
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=44.08 E-value=23 Score=27.55 Aligned_cols=41 Identities=10% Similarity=-0.105 Sum_probs=28.3
Q ss_pred HHHHHhhhcCeEEEcCccCcccccCC----CceeEeccccccccc
Q 045654 45 ANWVLSFFAHKVFVAFNSTTECFSRK----DKCVACGNPVRLSLM 85 (137)
Q Consensus 45 aNr~l~~~a~~v~~~f~~~~~~l~~~----~k~v~tGnPVR~~~~ 85 (137)
..+.+.+.+|.+++..+..++.+... .++.++.|++..+..
T Consensus 135 ~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~~g~d~~~~ 179 (367)
T cd05844 135 RRRRLARRAALFIAVSQFIRDRLLALGFPPEKVHVHPIGVDTAKF 179 (367)
T ss_pred HHHHHHHhcCEEEECCHHHHHHHHHcCCCHHHeEEecCCCCHHhc
Confidence 34456688999998887766655321 468888888876543
No 26
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=40.83 E-value=89 Score=23.21 Aligned_cols=40 Identities=18% Similarity=0.070 Sum_probs=28.8
Q ss_pred HHHHhhhcCeEEEcCccCccc---ccCCCceeEecccccccccc
Q 045654 46 NWVLSFFAHKVFVAFNSTTEC---FSRKDKCVACGNPVRLSLMT 86 (137)
Q Consensus 46 Nr~l~~~a~~v~~~f~~~~~~---l~~~~k~v~tGnPVR~~~~~ 86 (137)
.+.+.+.+|.+++..+..... .+. .++.++.||+......
T Consensus 129 ~~~~~~~~d~ii~~s~~~~~~~~~~~~-~~~~vi~~~~~~~~~~ 171 (348)
T cd03820 129 RRLLYRRADAVVVLTEEDRALYYKKFN-KNVVVIPNPLPFPPEE 171 (348)
T ss_pred HHHHHhcCCEEEEeCHHHHHHhhccCC-CCeEEecCCcChhhcc
Confidence 677788999998887765211 123 6799999999987644
No 27
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=38.97 E-value=1.2e+02 Score=23.50 Aligned_cols=40 Identities=10% Similarity=-0.188 Sum_probs=28.1
Q ss_pred HHHHhhhcCeEEEcCccCccccc----CCCceeEeccccccccc
Q 045654 46 NWVLSFFAHKVFVAFNSTTECFS----RKDKCVACGNPVRLSLM 85 (137)
Q Consensus 46 Nr~l~~~a~~v~~~f~~~~~~l~----~~~k~v~tGnPVR~~~~ 85 (137)
.++..+.||.+++..+...+.+. ...++.++.|++.....
T Consensus 136 ~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~n~~~~~~~ 179 (371)
T cd04962 136 TRFSIEKSDGVTAVSESLRQETYELFDITKEIEVIPNFVDEDRF 179 (371)
T ss_pred HHHHHhhCCEEEEcCHHHHHHHHHhcCCcCCEEEecCCcCHhhc
Confidence 46677889999888876554442 11678899999987643
No 28
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=35.61 E-value=91 Score=23.57 Aligned_cols=42 Identities=5% Similarity=-0.047 Sum_probs=28.5
Q ss_pred HHHHHhhhcCeEEEcCccCcccccCC---CceeEecccccccccc
Q 045654 45 ANWVLSFFAHKVFVAFNSTTECFSRK---DKCVACGNPVRLSLMT 86 (137)
Q Consensus 45 aNr~l~~~a~~v~~~f~~~~~~l~~~---~k~v~tGnPVR~~~~~ 86 (137)
..+.+.+.||.+++..+...+++... .++.++.+++..+...
T Consensus 141 ~~~~~~~~~d~i~~~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 185 (374)
T cd03817 141 LSRRFYNRCDAVIAPSEKIADLLREYGVKRPIEVIPTGIDLDRFE 185 (374)
T ss_pred HHHHHhhhCCEEEeccHHHHHHHHhcCCCCceEEcCCccchhccC
Confidence 44666788999998887665555321 4577888888766544
No 29
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=35.34 E-value=11 Score=30.03 Aligned_cols=43 Identities=23% Similarity=0.253 Sum_probs=31.4
Q ss_pred hhHHHHH-HhhhcCeEEEcCccCcccccCC----CceeEecccccccc
Q 045654 42 PGIANWV-LSFFAHKVFVAFNSTTECFSRK----DKCVACGNPVRLSL 84 (137)
Q Consensus 42 pG~aNr~-l~~~a~~v~~~f~~~~~~l~~~----~k~v~tGnPVR~~~ 84 (137)
|-..||. ..+.+|.+|+..+..++.+.+. +|+.++|||+-..+
T Consensus 130 ~~~~~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~~I~vign~~~d~~ 177 (365)
T TIGR00236 130 PEEINRQLTGHIADLHFAPTEQAKDNLLRENVKADSIFVTGNTVIDAL 177 (365)
T ss_pred ccHHHHHHHHHHHHhccCCCHHHHHHHHHcCCCcccEEEeCChHHHHH
Confidence 4556775 5678999999998877766321 57999999985543
No 30
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=34.78 E-value=92 Score=23.12 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=31.2
Q ss_pred HHHHHhhhcCeEEEcCccCcccccC-----CCceeEecccccccccc
Q 045654 45 ANWVLSFFAHKVFVAFNSTTECFSR-----KDKCVACGNPVRLSLMT 86 (137)
Q Consensus 45 aNr~l~~~a~~v~~~f~~~~~~l~~-----~~k~v~tGnPVR~~~~~ 86 (137)
-.+.+.+.+|.+++..+...+.+.+ ..++.++.||+......
T Consensus 128 ~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 174 (353)
T cd03811 128 LIRKLYRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIR 174 (353)
T ss_pred HHHhhccccceEEEeccchhhhHHHhhcCCccccEEecCCcChhhcC
Confidence 4677788999999988877666521 15788999999977543
No 31
>PRK10307 putative glycosyl transferase; Provisional
Probab=34.75 E-value=1.1e+02 Score=24.55 Aligned_cols=40 Identities=13% Similarity=-0.069 Sum_probs=28.0
Q ss_pred HHHHhhhcCeEEEcCccCcccccC----CCceeEeccccccccc
Q 045654 46 NWVLSFFAHKVFVAFNSTTECFSR----KDKCVACGNPVRLSLM 85 (137)
Q Consensus 46 Nr~l~~~a~~v~~~f~~~~~~l~~----~~k~v~tGnPVR~~~~ 85 (137)
-+++.+.||.+++..+...+.+.. .+|+.++.|.|..+..
T Consensus 165 ~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~i~vi~ngvd~~~~ 208 (412)
T PRK10307 165 ERSLLRRFDNVSTISRSMMNKAREKGVAAEKVIFFPNWSEVARF 208 (412)
T ss_pred HHHHHhhCCEEEecCHHHHHHHHHcCCCcccEEEECCCcCHhhc
Confidence 345567799999888876655521 1578899999987643
No 32
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=34.50 E-value=14 Score=29.92 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=28.7
Q ss_pred HHHHhhhcCeEEEcCccCcccccCC----CceeEecccccccccc
Q 045654 46 NWVLSFFAHKVFVAFNSTTECFSRK----DKCVACGNPVRLSLMT 86 (137)
Q Consensus 46 Nr~l~~~a~~v~~~f~~~~~~l~~~----~k~v~tGnPVR~~~~~ 86 (137)
=+..++.|+..|++-+.+++.+.+. .++.+||||+-+.+..
T Consensus 116 R~~i~~la~lhf~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~ 160 (346)
T PF02350_consen 116 RHAIDKLAHLHFAPTEEARERLLQEGEPPERIFVVGNPGIDALLQ 160 (346)
T ss_dssp HHHHHHH-SEEEESSHHHHHHHHHTT--GGGEEE---HHHHHHHH
T ss_pred hhhhhhhhhhhccCCHHHHHHHHhcCCCCCeEEEEChHHHHHHHH
Confidence 3467899999999999887777321 7899999999988753
No 33
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=33.92 E-value=84 Score=23.92 Aligned_cols=48 Identities=15% Similarity=-0.095 Sum_probs=33.4
Q ss_pred CCChhhHHHHHHhhhcCeEEEc-CccCcccccCC--CceeEeccccccccc
Q 045654 38 FDQVPGIANWVLSFFAHKVFVA-FNSTTECFSRK--DKCVACGNPVRLSLM 85 (137)
Q Consensus 38 qNa~pG~aNr~l~~~a~~v~~~-f~~~~~~l~~~--~k~v~tGnPVR~~~~ 85 (137)
+....-...+.+.+.+|.+++. .+...+.+... .++.++.||+.....
T Consensus 120 ~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 170 (366)
T cd03822 120 PRPGDRALLRLLLRRADAVIVMSSELLRALLLRAYPEKIAVIPHGVPDPPA 170 (366)
T ss_pred cchhhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcCCCcEEEeCCCCcCccc
Confidence 3444556677788899999988 55555554431 479999999987644
No 34
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=33.76 E-value=92 Score=23.57 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=30.3
Q ss_pred HHHHHhhhcCeEEEcCccCccccc-----CCCceeEecccccccccc
Q 045654 45 ANWVLSFFAHKVFVAFNSTTECFS-----RKDKCVACGNPVRLSLMT 86 (137)
Q Consensus 45 aNr~l~~~a~~v~~~f~~~~~~l~-----~~~k~v~tGnPVR~~~~~ 86 (137)
-.+++.+.+|.+++..+...+.+. . .++.++.|++......
T Consensus 158 ~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~ 203 (394)
T cd03794 158 LERLIYRRADAIVVISPGMREYLVRRGVPP-EKISVIPNGVDLELFK 203 (394)
T ss_pred HHHHHHhcCCEEEEECHHHHHHHHhcCCCc-CceEEcCCCCCHHHcC
Confidence 345667889999988877766652 3 6788999999877544
No 35
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=33.03 E-value=1.7 Score=29.72 Aligned_cols=20 Identities=40% Similarity=0.790 Sum_probs=17.3
Q ss_pred CCChhhHHHHHHhhhcCeEE
Q 045654 38 FDQVPGIANWVLSFFAHKVF 57 (137)
Q Consensus 38 qNa~pG~aNr~l~~~a~~v~ 57 (137)
||.+|+.+|+++..++++++
T Consensus 119 ~~~iP~~~~~~~p~~~~~~~ 138 (139)
T PF03033_consen 119 QLGIPGVANRLFPWFATRVF 138 (139)
T ss_dssp HHTS-EEEEESSGGGSTCSC
T ss_pred hhCchHHHHhhCCcCcCccc
Confidence 99999999999999998775
No 36
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=32.08 E-value=24 Score=25.83 Aligned_cols=59 Identities=15% Similarity=0.046 Sum_probs=33.0
Q ss_pred ccccCCCceeEeccccccccccccChhhhhchhcCCCCCC-cHH-----HHHHHHHHhc-CCCcEEEE
Q 045654 65 ECFSRKDKCVACGNPVRLSLMTYVSKVVARLNFFSRVEEG-GRG-----KCEDGMLLEK-HNLLIIWP 125 (137)
Q Consensus 65 ~~l~~~~k~v~tGnPVR~~~~~~~~~~~a~~~l~g~lgSq-GA~-----~~v~~~l~~~-~~~~vi~~ 125 (137)
.+.|. -+-++|.||.=-++...+..+..+.++-+.-|+ +|. +.+.++...- -.|..+|+
T Consensus 90 ~ynP~--D~RFlG~PVD~IvF~Gls~~~~~eIvfiEVKtGk~~~Lt~rEk~ir~aVe~grV~~e~~~~ 155 (156)
T PF10107_consen 90 PYNPK--DARFLGSPVDFIVFDGLSDGNIIEIVFIEVKTGKSARLTKREKAIRDAVEAGRVRWEEIRI 155 (156)
T ss_pred CCChh--hheecCCCceEEEEcCCCCCCcceEEEEEeccCCCcccCHHHHHHHHHHHcCceEEEEEec
Confidence 34453 388999999977666544433333332223454 442 7777777653 24555553
No 37
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=31.02 E-value=1.2e+02 Score=24.20 Aligned_cols=39 Identities=10% Similarity=0.032 Sum_probs=27.2
Q ss_pred HHHhhhcCeEEEcCccCcccc------cCCCceeEecccccccccc
Q 045654 47 WVLSFFAHKVFVAFNSTTECF------SRKDKCVACGNPVRLSLMT 86 (137)
Q Consensus 47 r~l~~~a~~v~~~f~~~~~~l------~~~~k~v~tGnPVR~~~~~ 86 (137)
+.+.+.+|.+++..++..+.+ +. +|+.++.|+|..+...
T Consensus 158 ~~~~~~~d~vi~~s~~~~~~~~~~~~~~~-~ki~vi~ngvd~~~~~ 202 (405)
T TIGR03449 158 QQLVDNADRLIANTDEEARDLVRHYDADP-DRIDVVAPGADLERFR 202 (405)
T ss_pred HHHHHhcCeEEECCHHHHHHHHHHcCCCh-hhEEEECCCcCHHHcC
Confidence 446788999988776544433 12 5788999999876544
No 38
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=30.35 E-value=1.3e+02 Score=22.47 Aligned_cols=43 Identities=12% Similarity=-0.029 Sum_probs=31.2
Q ss_pred hHHHHHHhhhcCeEEEcCccCcccc-----cCCCceeEecccccccccc
Q 045654 43 GIANWVLSFFAHKVFVAFNSTTECF-----SRKDKCVACGNPVRLSLMT 86 (137)
Q Consensus 43 G~aNr~l~~~a~~v~~~f~~~~~~l-----~~~~k~v~tGnPVR~~~~~ 86 (137)
-...+...+.+|.+++..+...+.+ +. .++.+++|++......
T Consensus 139 ~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~ 186 (377)
T cd03798 139 RALLRRALRRADAVIAVSEALADELKALGIDP-EKVTVIPNGVDTERFS 186 (377)
T ss_pred HHHHHHHHhcCCeEEeCCHHHHHHHHHhcCCC-CceEEcCCCcCcccCC
Confidence 3345667788999998887765554 33 6799999999877554
No 39
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=29.03 E-value=1.6e+02 Score=21.78 Aligned_cols=44 Identities=14% Similarity=0.023 Sum_probs=33.1
Q ss_pred hhHHHHHHhhhcCeEEEcCccCcccccCC-----CceeEeccccccccc
Q 045654 42 PGIANWVLSFFAHKVFVAFNSTTECFSRK-----DKCVACGNPVRLSLM 85 (137)
Q Consensus 42 pG~aNr~l~~~a~~v~~~f~~~~~~l~~~-----~k~v~tGnPVR~~~~ 85 (137)
.....+.+.+.+|.+++..+...+.+... +++.++.||+.....
T Consensus 134 ~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (374)
T cd03801 134 ARALERRALRRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERF 182 (374)
T ss_pred HHHHHHHHHHhCCEEEEecHHHHHHHHhcCCCCCCcEEEecCccccccc
Confidence 44677888999999998887766666421 378899999987654
No 40
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=24.26 E-value=1.7e+02 Score=22.05 Aligned_cols=44 Identities=14% Similarity=0.002 Sum_probs=31.8
Q ss_pred hHHHHHHhhhcCeEEEcCccCcccccCC--CceeEecccccccccc
Q 045654 43 GIANWVLSFFAHKVFVAFNSTTECFSRK--DKCVACGNPVRLSLMT 86 (137)
Q Consensus 43 G~aNr~l~~~a~~v~~~f~~~~~~l~~~--~k~v~tGnPVR~~~~~ 86 (137)
..-.+++.+.+|.+++..+...+.+... .++.++.+++..+...
T Consensus 135 ~~~~~~~~~~~d~i~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 180 (364)
T cd03814 135 WAYLRWFHNRADRVLVPSPSLADELRARGFRRVRLWPRGVDTELFH 180 (364)
T ss_pred HHHHHHHHHhCCEEEeCCHHHHHHHhccCCCceeecCCCccccccC
Confidence 4566778889999999988776644321 5688889998876543
No 41
>TIGR00541 hisDCase_pyru histidine decarboxylase, pyruvoyl type. This enzyme converts histadine to histamine in a single step by catalyzing the release of CO2. This type is synthesized as an inactive single chain precursor, then cleaved into two chains. The Ser at the new N-terminus at the cleavage site is converted to a pyruvoyl group essential for activity. This type of histidine decarboxylase appears is known so far only in some Gram-positive bacteria, where it may play a role in amino acid catabolism. There is also a pyridoxal phosphate type histidine decarboxylase, as found in human, where histamine is a biologically active amine.
Probab=21.42 E-value=29 Score=27.83 Aligned_cols=11 Identities=45% Similarity=0.763 Sum_probs=10.2
Q ss_pred cccCCCCChhh
Q 045654 33 PSSLPFDQVPG 43 (137)
Q Consensus 33 y~S~PqNa~pG 43 (137)
||++|+||+||
T Consensus 264 Yvtla~nAvP~ 274 (310)
T TIGR00541 264 YVSLAIDAIPG 274 (310)
T ss_pred cEEehhhccCC
Confidence 99999999986
No 42
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=21.13 E-value=34 Score=28.64 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=34.2
Q ss_pred hhhHHHHHH-hhhcCeEEEcCccCcccccCC----CceeEecccccccccc
Q 045654 41 VPGIANWVL-SFFAHKVFVAFNSTTECFSRK----DKCVACGNPVRLSLMT 86 (137)
Q Consensus 41 ~pG~aNr~l-~~~a~~v~~~f~~~~~~l~~~----~k~v~tGnPVR~~~~~ 86 (137)
+|==.||.+ +..++.-|+.-+.++++|-.. +++.+||||+=..+..
T Consensus 133 ~PEE~NR~l~~~~S~~hfapte~ar~nLl~EG~~~~~IfvtGnt~iDal~~ 183 (383)
T COG0381 133 FPEEINRRLTSHLSDLHFAPTEIARKNLLREGVPEKRIFVTGNTVIDALLN 183 (383)
T ss_pred CcHHHHHHHHHHhhhhhcCChHHHHHHHHHcCCCccceEEeCChHHHHHHH
Confidence 477778765 677777788888887777321 5699999999887654
Done!