Query 045654
Match_columns 137
No_of_seqs 114 out of 1044
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 06:46:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045654.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045654hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f0ka_ c.87.1.2 (A:) Peptidog 97.7 1.1E-05 7.9E-10 59.9 4.1 86 38-131 121-218 (351)
2 d1o6ca_ c.87.1.3 (A:) UDP-N-ac 35.8 4.3 0.00031 30.0 0.4 45 41-85 131-180 (377)
3 d1v4va_ c.87.1.3 (A:) UDP-N-ac 31.7 5.9 0.00043 29.1 0.6 44 43-86 134-181 (373)
4 d1f6da_ c.87.1.3 (A:) UDP-N-ac 20.7 13 0.00092 27.3 0.6 42 43-84 132-177 (376)
5 d1v6za1 b.122.1.2 (A:4-66) Hyp 20.4 19 0.0014 19.3 1.2 27 57-86 32-58 (63)
6 d2gc6a2 c.72.2.2 (A:1-296) Fol 16.5 57 0.0041 22.4 3.5 23 108-130 23-49 (296)
7 d1c9ka_ c.37.1.11 (A:) Adenosy 15.7 46 0.0033 21.8 2.6 18 41-58 153-170 (180)
8 d1lw7a2 c.37.1.1 (A:220-411) T 10.0 50 0.0036 19.8 1.3 8 72-79 9-16 (192)
9 d1o5za2 c.72.2.2 (A:-2-293) Fo 9.9 86 0.0063 21.4 2.7 23 108-130 27-53 (296)
10 g1pya.1 d.155.1.1 (A:,B:) Hist 9.7 19 0.0014 26.0 -1.1 11 33-43 262-272 (310)
No 1
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}
Probab=97.73 E-value=1.1e-05 Score=59.86 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=60.5
Q ss_pred CCChhhHHHHHHhhhcCeEEEcCccCcccccCCCceeEeccccccccccccChhhhhc--------hhcCCCCCCcHH--
Q 045654 38 FDQVPGIANWVLSFFAHKVFVAFNSTTECFSRKDKCVACGNPVRLSLMTYVSKVVARL--------NFFSRVEEGGRG-- 107 (137)
Q Consensus 38 qNa~pG~aNr~l~~~a~~v~~~f~~~~~~l~~~~k~v~tGnPVR~~~~~~~~~~~a~~--------~l~g~lgSqGA~-- 107 (137)
+|..+|.++++...+++.+...+.... .....+|+|++..+........... .+.| ||+|+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--gs~g~~~~ 192 (351)
T d1f0ka_ 121 QNGIAGLTNKWLAKIATKVMQAFPGAF------PNAEVVGNPVRTDVLALPLPQQRLAGREGPVRVLVVG--GSQGARIL 192 (351)
T ss_dssp CSSSCCHHHHHHTTTCSEEEESSTTSS------SSCEECCCCCCHHHHTSCCHHHHHTTCCSSEEEEEEC--TTTCCHHH
T ss_pred cccccchhHHHhhhhcceeeccccccc------cceeEEcCCcccccccchhHHhhhhcccCCccccccc--ccchhhhh
Confidence 899999999999999999988876542 4467889999998765332221111 1124 799886
Q ss_pred -HHHHHHHHhc-CCCcEEEEcCCCCH
Q 045654 108 -KCEDGMLLEK-HNLLIIWPTGIEAF 131 (137)
Q Consensus 108 -~~v~~~l~~~-~~~~vi~~tG~~~~ 131 (137)
+.+.+.+... ....++|+++..+.
T Consensus 193 ~~~~~~~~~~l~~~~~~i~~~~~~~~ 218 (351)
T d1f0ka_ 193 NQTMPQVAAKLGDSVTIWHQSGKGSQ 218 (351)
T ss_dssp HHHHHHHHHHHGGGEEEEEECCTTCH
T ss_pred HHHHHHhhhhhcccceeeeeccccch
Confidence 7777777664 45567777776554
No 2
>d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]}
Probab=35.82 E-value=4.3 Score=30.00 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=35.9
Q ss_pred hhhHHHH-HHhhhcCeEEEcCccCcccccCC----CceeEeccccccccc
Q 045654 41 VPGIANW-VLSFFAHKVFVAFNSTTECFSRK----DKCVACGNPVRLSLM 85 (137)
Q Consensus 41 ~pG~aNr-~l~~~a~~v~~~f~~~~~~l~~~----~k~v~tGnPVR~~~~ 85 (137)
.|-=.|| ..++.++..|++.+++++.+.+. .++.+||+|.=+.+.
T Consensus 131 ~~de~~R~~iskls~~hf~~t~~~~~~L~~~G~~~~~I~~vG~~~~D~i~ 180 (377)
T d1o6ca_ 131 FPEELNRQMTGAIADLHFAPTGQAKDNLLKENKKADSIFVTGNTAIDALN 180 (377)
T ss_dssp TTHHHHHHHHHHHCSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHH
T ss_pred CchhhhccccccceeEEeecchhhhhhhhhhccccceEeeccchhHHHHH
Confidence 5666777 77899999999999998888432 579999999877654
No 3
>d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]}
Probab=31.67 E-value=5.9 Score=29.14 Aligned_cols=44 Identities=5% Similarity=0.042 Sum_probs=33.7
Q ss_pred hHHHHHHhhhcCeEEEcCccCcccccCC----CceeEecccccccccc
Q 045654 43 GIANWVLSFFAHKVFVAFNSTTECFSRK----DKCVACGNPVRLSLMT 86 (137)
Q Consensus 43 G~aNr~l~~~a~~v~~~f~~~~~~l~~~----~k~v~tGnPVR~~~~~ 86 (137)
...=...++.++..|++.+.+++.+.+. .++.+||+|.-+.+..
T Consensus 134 e~~R~~iskls~~hf~~t~~~~~~L~~~Ge~~~~I~~vG~p~~D~i~~ 181 (373)
T d1v4va_ 134 EANRRLTDVLTDLDFAPTPLAKANLLKEGKREEGILVTGQTGVDAVLL 181 (373)
T ss_dssp HHHHHHHHHHCSEEEESSHHHHHHHHTTTCCGGGEEECCCHHHHHHHH
T ss_pred hhhhhhhccccceeeecchhhhhhhhhhcccccceeecccchhhHHHh
Confidence 3344457889999999999887777432 5799999999887753
No 4
>d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]}
Probab=20.66 E-value=13 Score=27.33 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=32.2
Q ss_pred hHHHHHHhhhcCeEEEcCccCcccccCC----CceeEecccccccc
Q 045654 43 GIANWVLSFFAHKVFVAFNSTTECFSRK----DKCVACGNPVRLSL 84 (137)
Q Consensus 43 G~aNr~l~~~a~~v~~~f~~~~~~l~~~----~k~v~tGnPVR~~~ 84 (137)
...=...++.++.-|++-+..++.+.+. .++.+||+|.=+.+
T Consensus 132 e~~R~~iskls~~hf~~~~~~~~~L~~~G~~~~~I~~vG~~~~D~l 177 (376)
T d1f6da_ 132 EANRTLTGHLAMYHFSPTETSRQNLLRENVADSRIFITGNTVIDAL 177 (376)
T ss_dssp HHHHHHHHHTCSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHHH
T ss_pred hhhhhhhccceeEEEeccHHHHhHHHhcCCCccccceecCchHHHH
Confidence 3344456799999999999988877422 67999999997655
No 5
>d1v6za1 b.122.1.2 (A:4-66) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]}
Probab=20.43 E-value=19 Score=19.29 Aligned_cols=27 Identities=26% Similarity=0.614 Sum_probs=20.3
Q ss_pred EEcCccCcccccCCCceeEecccccccccc
Q 045654 57 FVAFNSTTECFSRKDKCVACGNPVRLSLMT 86 (137)
Q Consensus 57 ~~~f~~~~~~l~~~~k~v~tGnPVR~~~~~ 86 (137)
|.-|++..+.+.. ++-.|-|+|-.+++
T Consensus 32 ftvfd~~realae---vvdlgpp~ryrile 58 (63)
T d1v6za1 32 FTVFDGEREALAE---VVDLGPPLRYRVLE 58 (63)
T ss_dssp EEEECSSCEEEEE---EEECCSSCEEEEEE
T ss_pred eEEecchHHHHHH---HHhcCCchhhhhhh
Confidence 5667777766654 88999999977654
No 6
>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}
Probab=16.46 E-value=57 Score=22.45 Aligned_cols=23 Identities=17% Similarity=0.023 Sum_probs=14.8
Q ss_pred HHHHHHHHhc----CCCcEEEEcCCCC
Q 045654 108 KCEDGMLLEK----HNLLIIWPTGIEA 130 (137)
Q Consensus 108 ~~v~~~l~~~----~~~~vi~~tG~~~ 130 (137)
+-+.++++.+ +++.+||+||.+.
T Consensus 23 ~r~~~~l~~lg~P~~~lkvI~VTGTNG 49 (296)
T d2gc6a2 23 RRILTLLHALGNPQQQGRYIHVTGTNG 49 (296)
T ss_dssp HHHHHHHHHTTCGGGSSCEEEEECSSS
T ss_pred HHHHHHHHHcCCchhhCCEEEEeccCc
Confidence 4455555542 4688999999753
No 7
>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}
Probab=15.69 E-value=46 Score=21.83 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=16.0
Q ss_pred hhhHHHHHHhhhcCeEEE
Q 045654 41 VPGIANWVLSFFAHKVFV 58 (137)
Q Consensus 41 ~pG~aNr~l~~~a~~v~~ 58 (137)
..|+.|+.+++.||.|..
T Consensus 153 ~lG~lnq~lA~~ad~V~~ 170 (180)
T d1c9ka_ 153 IAGRVNQRLAAAADEVWL 170 (180)
T ss_dssp HHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHCCEEEE
Confidence 479999999999998865
No 8
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}
Probab=10.05 E-value=50 Score=19.79 Aligned_cols=8 Identities=13% Similarity=0.185 Sum_probs=3.9
Q ss_pred ceeEeccc
Q 045654 72 KCVACGNP 79 (137)
Q Consensus 72 k~v~tGnP 79 (137)
+++++|.|
T Consensus 9 ~I~i~G~~ 16 (192)
T d1lw7a2 9 TVAILGGE 16 (192)
T ss_dssp EEEEECCT
T ss_pred EEEEECCC
Confidence 35555544
No 9
>d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase {Thermotoga maritima [TaxId: 2336]}
Probab=9.86 E-value=86 Score=21.37 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=15.3
Q ss_pred HHHHHHHHh----cCCCcEEEEcCCCC
Q 045654 108 KCEDGMLLE----KHNLLIIWPTGIEA 130 (137)
Q Consensus 108 ~~v~~~l~~----~~~~~vi~~tG~~~ 130 (137)
+-+..++.. .+++.+|++||.+.
T Consensus 27 ~r~~~~l~~lg~P~~~lkvI~VTGTNG 53 (296)
T d1o5za2 27 ERISMLLSKLGNPHLEYKTIHIGGTNG 53 (296)
T ss_dssp HHHHHHHHHTTCGGGSSEEEEEECSSS
T ss_pred HHHHHHHHHcCCchhhCCEEEEEecCc
Confidence 344555544 24789999999754
No 10
>g1pya.1 d.155.1.1 (A:,B:) Histidine decarboxylase {Lactobacillus sp., strain 30a [TaxId: 1591]}
Probab=9.72 E-value=19 Score=26.01 Aligned_cols=11 Identities=55% Similarity=0.996 Sum_probs=10.3
Q ss_pred cccCCCCChhh
Q 045654 33 PSSLPFDQVPG 43 (137)
Q Consensus 33 y~S~PqNa~pG 43 (137)
||++|+||+|+
T Consensus 262 YVtLA~nAVP~ 272 (310)
T g1pya.1 262 YVSLPIDSIPG 272 (310)
T ss_dssp EEEEEGGGSTT
T ss_pred cEEehhcccCC
Confidence 99999999997
Done!