BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045656
(802 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OMX|A Chain A, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2)
pdb|1OMX|B Chain B, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2)
pdb|1OMZ|A Chain A, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2) In Complex With
Udpgalnac
pdb|1OMZ|B Chain B, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2) In Complex With
Udpgalnac
pdb|1ON6|A Chain A, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminotransferase (Extl2) In Complex With
Udpglcnac
pdb|1ON6|B Chain B, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminotransferase (Extl2) In Complex With
Udpglcnac
pdb|1ON8|A Chain A, Crystal Structure Of Mouse
Alpha-1,4-N-Acetylhexosaminyltransferase (Extl2) With
Udp And Glcuab(1-3)galb(1-O)-Naphthalenelmethanol An
Acceptor Substrate Analog
pdb|1ON8|B Chain B, Crystal Structure Of Mouse
Alpha-1,4-N-Acetylhexosaminyltransferase (Extl2) With
Udp And Glcuab(1-3)galb(1-O)-Naphthalenelmethanol An
Acceptor Substrate Analog
Length = 293
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 128/247 (51%), Gaps = 16/247 (6%)
Query: 550 KGHYSQFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNK-GE--PPKL--SDLDSA 604
K FT++ T++ L++ + HY S+ +++VVWN GE P +L S
Sbjct: 24 KSALDSFTLIMQTYNRTDLLLRL-LNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHP 82
Query: 605 VPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFY 664
+PV + + N + NR ++ P ++T VL +DDD +++ D+ F +W+Q PD+I+GF
Sbjct: 83 IPVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFV 142
Query: 665 PR-LVNGSPLRYRGEKYARRHKG------YNMILTGAAFVDSQIAFNRYWSEQAKAGREF 717
PR V+ S Y + + G Y+M+L GA+F +S+ + + +Q A
Sbjct: 143 PRKHVSTSSGIYSYGGFELQTPGPGNGDQYSMVLIGASFFNSK--YLELFQKQPAAVHAL 200
Query: 718 VDKFFNCEDVLLNYLYANASASKTVEYVRPAWAIDTSK-FSGVAISRNTQVHYHKRSECL 776
+D+ NC+D+ +N+L + + +V+P ++ K +G + + H+ +RS C+
Sbjct: 201 IDETQNCDDIAMNFLVTRHTGKPSGIFVKPINMVNLEKETNGYSGMWHRAEHFLQRSYCI 260
Query: 777 RKFAEMY 783
K +Y
Sbjct: 261 NKLVNIY 267
>pdb|3KST|A Chain A, Crystal Structure Of Endo-1,4-Beta-Xylanase (Np_811807.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A
Resolution
pdb|3KST|B Chain B, Crystal Structure Of Endo-1,4-Beta-Xylanase (Np_811807.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A
Resolution
Length = 306
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 267 LYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWL-FGSDHSGFGTTQNGQLEIWYSSS 325
L + + + W+L + K P ++ +G Y+L + ++H +N + Y++S
Sbjct: 171 LNQCIKAEVSWEL---LQGKVAEGPSLLKKNGVYYLIYSANH-----YENKGYGVGYATS 222
Query: 326 --PFGPWKPHKKNPIYNGDKSLG--ARNGGRPF 354
P GPW + KNP+ GD + G G PF
Sbjct: 223 DTPXGPWVKYSKNPLLQGDAATGLVGTGHGAPF 255
>pdb|3I3V|A Chain A, Crystal Structure Of Probable Secreted Solute-Binding
Lipoprotein From Streptomyces Coelicolor
pdb|3I3V|B Chain B, Crystal Structure Of Probable Secreted Solute-Binding
Lipoprotein From Streptomyces Coelicolor
pdb|3I3V|C Chain C, Crystal Structure Of Probable Secreted Solute-Binding
Lipoprotein From Streptomyces Coelicolor
pdb|3I3V|D Chain D, Crystal Structure Of Probable Secreted Solute-Binding
Lipoprotein From Streptomyces Coelicolor
Length = 405
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 195 LQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIY 254
+ G+DL YET + D+ DK W +G +D PY+ D+ +
Sbjct: 46 VNGDDLAQVYETSRLARKEADVVXVNLYDKTLAWTDVGATVDVK-----PYLDDWGLRGR 100
Query: 255 MMPESRA-----KGEVRL--YRAVNFPLEWKLEKIIMKKPLVDPFMINHD 297
++P + A +G VR Y A N+P+ + + ++ + VD D
Sbjct: 101 VLPAALADWTDDEGRVRAFPYFATNWPVAYN--RALLDRAGVDAIPTTGD 148
>pdb|2PP3|A Chain A, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
MUTANT K197A Liganded With Mg And L-Glucarate
pdb|2PP3|B Chain B, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
MUTANT K197A Liganded With Mg And L-Glucarate
pdb|2PP3|C Chain C, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
MUTANT K197A Liganded With Mg And L-Glucarate
Length = 398
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 264 EVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIW 321
EV L+ + +PLE LE PL + + DG+ W+ SD G G T + Q W
Sbjct: 332 EVHLHLSAAYPLEPWLEHFEWLNPLFNEQLELRDGRMWI--SDRHGLGFTLSEQARRW 387
>pdb|2PP0|A Chain A, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
FROM Salmonella Typhimurium Lt2
pdb|2PP0|B Chain B, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
FROM Salmonella Typhimurium Lt2
pdb|2PP0|C Chain C, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
FROM Salmonella Typhimurium Lt2
pdb|2PP1|A Chain A, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|B Chain B, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|C Chain C, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|D Chain D, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|E Chain E, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|F Chain F, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
Length = 398
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 264 EVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIW 321
EV L+ + +PLE LE PL + + DG+ W+ SD G G T + Q W
Sbjct: 332 EVHLHLSAAYPLEPWLEHFEWLNPLFNEQLELRDGRMWI--SDRHGLGFTLSEQARRW 387
>pdb|1WCS|A Chain A, A Mutant Of Trypanosoma Rangeli Sialidase Displaying
Trans- Sialidase Activity
Length = 641
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 67/183 (36%), Gaps = 26/183 (14%)
Query: 153 IETANVWR-DDSAAWPVANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYL----FYETK 207
IETA + DD A W I + S + V DP ++GN LY+ F +T+
Sbjct: 67 IETAVKYSVDDGATWNTQIAIKNSRASSVS-----RVVDPTVIVKGNKLYILVGSFNKTR 121
Query: 208 NSITMQGD---------IG-VAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMP 257
N T D +G V KS G T + FP FD ++
Sbjct: 122 NYWTQHRDGSDWEPLLVVGEVTKSAANGKTTATISWGKPVSLKPLFPAEFDG-----ILT 176
Query: 258 ESRAKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHD-GQYWLFGSDHSGFGTTQNG 316
+ G A N L + ++ M + M + D G W F S FG ++
Sbjct: 177 KEFVGGVGAAIVASNGNLVYPVQIADMGGRVFTKIMYSEDDGNTWKFAEGRSKFGCSEPA 236
Query: 317 QLE 319
LE
Sbjct: 237 VLE 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,117,983
Number of Sequences: 62578
Number of extensions: 992059
Number of successful extensions: 1993
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1971
Number of HSP's gapped (non-prelim): 22
length of query: 802
length of database: 14,973,337
effective HSP length: 107
effective length of query: 695
effective length of database: 8,277,491
effective search space: 5752856245
effective search space used: 5752856245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)