Query 045656
Match_columns 802
No_of_seqs 283 out of 512
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 04:09:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045656.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045656hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1022 Acetylglucosaminyltran 100.0 3E-127 6E-132 1047.2 15.2 676 98-802 1-691 (691)
2 KOG2264 Exostosin EXT1L [Signa 100.0 3.7E-79 7.9E-84 669.2 13.3 326 459-796 545-888 (907)
3 PF09258 Glyco_transf_64: Glyc 100.0 1.8E-71 3.9E-76 581.5 16.1 235 556-795 1-242 (247)
4 cd09000 GH43_XYL_1 Glycosyl hy 99.7 1.3E-16 2.8E-21 169.8 22.8 240 170-427 1-263 (288)
5 cd08984 GH43_5 Glycosyl hydrol 99.7 6.6E-15 1.4E-19 157.6 23.8 226 168-425 3-259 (294)
6 cd08989 GH43_XYL Glycosyl hydr 99.6 1.6E-14 3.4E-19 153.2 21.5 194 170-381 1-267 (269)
7 cd09002 GH43_XYL_3 Glycosyl hy 99.6 3.1E-14 6.8E-19 152.0 22.6 198 168-381 6-271 (280)
8 cd09004 GH43_bXyl Glycosyl hyd 99.6 3.6E-14 7.9E-19 149.9 22.8 198 170-382 1-266 (275)
9 cd08998 GH43_ABN_1 Glycosyl hy 99.6 5.1E-14 1.1E-18 149.8 22.9 195 185-381 56-279 (288)
10 PF04616 Glyco_hydro_43: Glyco 99.6 7.3E-14 1.6E-18 146.8 22.4 239 168-424 1-262 (286)
11 cd08992 GH43_like_1 Glycosyl h 99.6 1.7E-13 3.7E-18 150.6 19.8 194 162-369 13-272 (349)
12 cd08999 GH43_ABN_2 Glycosyl hy 99.5 5.8E-13 1.3E-17 140.7 21.8 195 186-381 61-280 (287)
13 cd08983 GH43_4 Glycosyl hydrol 99.5 5.1E-13 1.1E-17 142.6 21.3 200 169-388 5-225 (276)
14 cd08990 GH43_AXH_like Glycosyl 99.5 8.6E-13 1.9E-17 139.5 22.5 203 165-381 43-265 (274)
15 PF04616 Glyco_hydro_43: Glyco 99.5 1.2E-12 2.6E-17 137.6 20.4 189 188-381 68-279 (286)
16 cd08978 GH_F Glycosyl hydrolas 99.5 3.7E-12 7.9E-17 132.1 22.6 236 189-432 1-263 (271)
17 cd08994 GH43_like_2 Glycosyl h 99.5 3.9E-12 8.5E-17 135.3 23.3 205 185-390 10-251 (291)
18 cd09001 GH43_XYL_2 Glycosyl hy 99.5 6.1E-12 1.3E-16 133.5 22.1 221 168-419 2-243 (269)
19 cd08999 GH43_ABN_2 Glycosyl hy 99.5 7.4E-12 1.6E-16 132.3 22.6 239 170-426 1-266 (287)
20 cd08991 GH43_bXyl_2 Glycosyl h 99.4 1.3E-11 2.8E-16 131.5 21.4 193 186-381 54-282 (294)
21 cd09000 GH43_XYL_1 Glycosyl hy 99.4 1.6E-11 3.6E-16 130.9 22.0 187 185-381 66-279 (288)
22 cd08988 GH43_ABN Glycosyl hydr 99.4 5.3E-11 1.1E-15 126.9 23.9 193 185-380 55-277 (279)
23 cd08982 GH43_3 Glycosyl hydrol 99.4 2.4E-11 5.2E-16 131.1 19.7 178 188-381 3-257 (295)
24 cd09003 GH43_AXH_1 Glycosyl hy 99.4 4.9E-11 1.1E-15 129.5 21.4 188 186-381 77-301 (311)
25 cd08772 GH43_62_32_68 Glycosyl 99.3 1.5E-10 3.2E-15 120.4 22.7 188 189-382 1-216 (286)
26 cd08978 GH_F Glycosyl hydrolas 99.3 1.5E-10 3.2E-15 120.1 22.4 193 187-381 58-270 (271)
27 cd08984 GH43_5 Glycosyl hydrol 99.3 4.1E-10 8.8E-15 120.9 23.8 170 186-368 78-257 (294)
28 cd09001 GH43_XYL_2 Glycosyl hy 99.3 2.3E-10 4.9E-15 121.6 21.5 177 185-381 74-260 (269)
29 cd08998 GH43_ABN_1 Glycosyl hy 99.3 2.5E-10 5.4E-15 121.7 21.7 220 188-425 1-266 (288)
30 cd08772 GH43_62_32_68 Glycosyl 99.3 4.8E-10 1E-14 116.6 22.4 178 186-365 59-261 (286)
31 cd08980 GH43_1 Glycosyl hydrol 99.3 1.3E-09 2.9E-14 116.2 25.8 192 185-381 53-278 (288)
32 cd08990 GH43_AXH_like Glycosyl 99.2 9.8E-10 2.1E-14 116.4 21.3 222 189-426 1-251 (274)
33 cd09003 GH43_AXH_1 Glycosyl hy 99.2 1.5E-09 3.3E-14 117.9 22.4 237 170-426 1-283 (311)
34 cd08991 GH43_bXyl_2 Glycosyl h 99.2 1.8E-09 3.8E-14 115.2 21.5 230 189-426 1-269 (294)
35 cd08981 GH43_2 Glycosyl hydrol 99.2 1.3E-09 2.9E-14 117.3 20.8 186 185-381 66-282 (291)
36 cd08985 GH43_6 Glycosyl hydrol 99.2 1.5E-09 3.3E-14 115.2 20.9 177 185-367 63-247 (265)
37 cd08980 GH43_1 Glycosyl hydrol 99.2 4.5E-09 9.9E-14 112.1 24.2 222 189-425 1-263 (288)
38 cd08986 GH43_7 Glycosyl hydrol 99.2 1.9E-09 4.2E-14 114.6 20.1 214 188-423 2-257 (269)
39 cd08981 GH43_2 Glycosyl hydrol 99.2 3.2E-09 6.9E-14 114.4 21.6 226 186-423 4-269 (291)
40 cd08986 GH43_7 Glycosyl hydrol 99.2 2.4E-09 5.2E-14 113.9 20.2 166 185-365 77-254 (269)
41 cd08997 GH68 Glycosyl hydrolas 99.1 4.3E-09 9.2E-14 116.3 20.7 157 186-343 70-295 (349)
42 cd08994 GH43_like_2 Glycosyl h 99.1 8.7E-09 1.9E-13 109.9 21.9 179 138-334 47-251 (291)
43 cd08988 GH43_ABN Glycosyl hydr 99.1 9.4E-09 2E-13 109.8 21.1 218 189-424 1-264 (279)
44 cd08993 GH43_DUF377 Glycosyl h 99.1 7.6E-09 1.7E-13 109.4 20.2 184 190-381 2-208 (268)
45 cd08995 GH32_Aec43_like Glycos 99.0 1.3E-08 2.8E-13 108.0 19.6 170 189-364 1-197 (280)
46 cd08995 GH32_Aec43_like Glycos 99.0 3.7E-08 8.1E-13 104.4 22.5 138 187-332 62-220 (280)
47 cd08987 GH62 Glycosyl hydrolas 98.9 3.5E-08 7.6E-13 106.0 18.4 182 186-389 22-230 (303)
48 cd08979 GH_J Glycosyl hydrolas 98.9 2.8E-08 6.1E-13 103.6 16.5 140 186-332 64-229 (276)
49 cd08987 GH62 Glycosyl hydrolas 98.9 3.8E-08 8.1E-13 105.8 16.6 143 185-341 76-241 (303)
50 cd08985 GH43_6 Glycosyl hydrol 98.9 3.6E-07 7.9E-12 97.2 22.9 192 189-392 4-215 (265)
51 cd08979 GH_J Glycosyl hydrolas 98.9 1.2E-07 2.6E-12 98.9 18.2 171 187-365 5-207 (276)
52 cd08996 GH32_B_Fructosidase Gl 98.8 1.4E-07 2.9E-12 100.9 17.8 162 187-392 2-169 (298)
53 cd09002 GH43_XYL_3 Glycosyl hy 98.7 1.1E-06 2.3E-11 94.4 19.0 188 229-422 5-254 (280)
54 cd09004 GH43_bXyl Glycosyl hyd 98.7 3.6E-07 7.9E-12 96.8 15.2 125 241-380 8-146 (275)
55 COG3507 XynB Beta-xylosidase [ 98.6 2.4E-06 5.2E-11 98.2 21.0 236 168-424 21-291 (549)
56 smart00640 Glyco_32 Glycosyl h 98.6 7E-07 1.5E-11 101.6 16.0 165 184-392 5-179 (437)
57 cd08996 GH32_B_Fructosidase Gl 98.5 1.6E-05 3.4E-10 85.2 22.5 119 187-307 63-201 (298)
58 cd08982 GH43_3 Glycosyl hydrol 98.5 2.6E-06 5.7E-11 92.3 16.4 158 241-422 3-172 (295)
59 cd08989 GH43_XYL Glycosyl hydr 98.5 2E-06 4.4E-11 91.6 15.3 124 241-381 8-146 (269)
60 TIGR01322 scrB_fam sucrose-6-p 98.4 5.3E-06 1.2E-10 94.6 16.6 163 184-392 22-191 (445)
61 cd08983 GH43_4 Glycosyl hydrol 98.4 2.4E-05 5.1E-10 84.0 20.1 139 186-332 77-227 (276)
62 cd08993 GH43_DUF377 Glycosyl h 98.4 2E-05 4.3E-10 83.5 19.3 151 135-306 23-189 (268)
63 COG3507 XynB Beta-xylosidase [ 98.3 2.7E-05 5.8E-10 89.8 18.2 214 184-409 88-327 (549)
64 cd08992 GH43_like_1 Glycosyl h 98.2 1.1E-05 2.5E-10 89.5 13.7 131 235-366 31-210 (349)
65 PF00251 Glyco_hydro_32N: Glyc 98.0 0.00012 2.7E-09 79.6 15.9 161 184-392 5-173 (308)
66 TIGR01322 scrB_fam sucrose-6-p 98.0 5E-05 1.1E-09 86.8 13.1 116 190-307 88-225 (445)
67 PF02435 Glyco_hydro_68: Levan 97.8 0.00023 4.9E-09 80.7 13.1 175 165-341 112-357 (428)
68 PF00251 Glyco_hydro_32N: Glyc 97.7 0.00054 1.2E-08 74.6 14.2 139 191-333 72-237 (308)
69 PF04041 DUF377: Domain of unk 97.7 0.0019 4.2E-08 71.0 18.1 188 188-390 32-249 (312)
70 smart00640 Glyco_32 Glycosyl h 97.6 0.001 2.2E-08 76.1 15.6 118 189-307 70-215 (437)
71 COG3940 Predicted beta-xylosid 97.6 0.0065 1.4E-07 63.2 19.2 236 169-423 6-279 (324)
72 cd08997 GH68 Glycosyl hydrolas 97.4 0.017 3.7E-07 64.6 21.1 176 211-390 38-284 (349)
73 COG3940 Predicted beta-xylosid 97.4 0.01 2.2E-07 61.8 17.5 169 184-359 67-269 (324)
74 COG1621 SacC Beta-fructosidase 97.2 0.0072 1.6E-07 70.1 15.9 164 184-392 37-207 (486)
75 PF04041 DUF377: Domain of unk 97.1 0.04 8.6E-07 60.7 19.1 143 136-306 59-223 (312)
76 PF13088 BNR_2: BNR repeat-lik 96.5 0.23 4.9E-06 52.2 18.9 189 186-390 46-248 (275)
77 cd00260 Sialidase Sialidases o 96.4 0.38 8.3E-06 52.7 20.6 184 187-382 15-230 (351)
78 PF13810 DUF4185: Domain of un 96.2 0.088 1.9E-06 58.3 14.6 139 195-341 102-278 (316)
79 PF00535 Glycos_transf_2: Glyc 96.2 0.0031 6.8E-08 58.9 2.6 111 557-668 1-118 (169)
80 COG2152 Predicted glycosylase 95.7 0.65 1.4E-05 51.1 17.8 206 169-382 10-243 (314)
81 PF03664 Glyco_hydro_62: Glyco 95.5 0.71 1.5E-05 49.4 16.8 198 166-387 9-227 (271)
82 cd00260 Sialidase Sialidases o 95.5 2.4 5.2E-05 46.5 21.8 190 186-381 74-293 (351)
83 cd04184 GT2_RfbC_Mx_like Myxoc 95.4 0.046 9.9E-07 54.0 7.3 111 555-665 2-120 (202)
84 cd06439 CESA_like_1 CESA_like_ 94.8 0.15 3.2E-06 52.5 9.2 108 553-662 28-143 (251)
85 cd06421 CESA_CelA_like CESA_Ce 94.2 0.12 2.7E-06 52.0 7.1 108 555-663 2-120 (234)
86 cd02526 GT2_RfbF_like RfbF is 93.8 0.82 1.8E-05 46.4 12.3 107 558-668 1-117 (237)
87 cd04185 GT_2_like_b Subfamily 93.6 0.23 4.9E-06 49.4 7.6 95 558-654 1-105 (202)
88 PRK11204 N-glycosyltransferase 93.5 0.17 3.7E-06 57.0 7.3 115 553-668 53-175 (420)
89 cd02510 pp-GalNAc-T pp-GalNAc- 93.5 0.17 3.7E-06 54.3 6.9 106 557-662 1-117 (299)
90 cd02522 GT_2_like_a GT_2_like_ 93.4 0.52 1.1E-05 47.2 9.9 107 556-665 1-108 (221)
91 PF13088 BNR_2: BNR repeat-lik 92.9 2.4 5.2E-05 44.5 14.4 171 198-382 1-191 (275)
92 cd02525 Succinoglycan_BP_ExoA 92.8 0.37 8.1E-06 48.8 7.8 110 555-665 1-118 (249)
93 PF13859 BNR_3: BNR repeat-lik 92.5 3.5 7.6E-05 45.8 15.5 141 185-334 57-213 (310)
94 cd06423 CESA_like CESA_like is 92.4 0.18 3.8E-06 46.9 4.6 108 558-667 1-116 (180)
95 cd06434 GT2_HAS Hyaluronan syn 92.3 0.26 5.7E-06 49.9 6.0 100 556-657 2-105 (235)
96 PF13859 BNR_3: BNR repeat-lik 92.2 10 0.00023 42.1 18.6 184 191-392 2-213 (310)
97 PF03664 Glyco_hydro_62: Glyco 92.2 3.9 8.5E-05 44.0 14.4 157 191-365 79-261 (271)
98 cd04186 GT_2_like_c Subfamily 92.0 0.33 7.2E-06 45.6 5.9 103 558-661 1-107 (166)
99 COG1621 SacC Beta-fructosidase 91.9 1.5 3.3E-05 51.3 12.2 89 194-284 107-208 (486)
100 PF13641 Glyco_tranf_2_3: Glyc 91.7 0.14 2.9E-06 51.9 3.1 110 555-665 2-123 (228)
101 KOG0228 Beta-fructofuranosidas 91.6 0.98 2.1E-05 52.7 10.0 147 185-340 59-233 (571)
102 TIGR01556 rhamnosyltran L-rham 91.4 0.85 1.8E-05 48.3 8.8 162 562-735 2-185 (281)
103 TIGR03469 HonB hopene-associat 91.3 1.1 2.4E-05 50.5 10.0 116 553-669 39-174 (384)
104 cd04195 GT2_AmsE_like GT2_AmsE 91.3 0.4 8.6E-06 47.4 5.8 106 557-662 1-115 (201)
105 PF02435 Glyco_hydro_68: Levan 90.7 1.2 2.6E-05 51.3 9.5 73 187-259 209-318 (428)
106 cd06913 beta3GnTL1_like Beta 1 90.4 0.77 1.7E-05 46.5 7.1 105 558-664 1-120 (219)
107 cd02511 Beta4Glucosyltransfera 90.2 0.58 1.2E-05 48.3 6.1 100 555-658 1-101 (229)
108 COG2152 Predicted glycosylase 89.9 7.5 0.00016 43.1 14.4 165 244-424 34-227 (314)
109 cd06427 CESA_like_2 CESA_like_ 89.7 1.1 2.3E-05 46.4 7.7 110 555-666 2-122 (241)
110 cd06437 CESA_CaSu_A2 Cellulose 89.1 0.65 1.4E-05 47.4 5.4 101 555-658 2-116 (232)
111 cd04192 GT_2_like_e Subfamily 87.7 1.3 2.8E-05 44.3 6.5 104 558-664 1-118 (229)
112 cd04179 DPM_DPG-synthase_like 87.7 0.7 1.5E-05 44.8 4.4 106 558-664 1-116 (185)
113 cd04196 GT_2_like_d Subfamily 87.0 4.5 9.7E-05 40.0 9.8 109 557-666 1-118 (214)
114 cd06442 DPM1_like DPM1_like re 86.7 1.1 2.5E-05 44.8 5.5 103 558-662 1-113 (224)
115 cd04187 DPM1_like_bac Bacteria 84.7 1.5 3.2E-05 42.9 5.0 105 558-663 1-115 (181)
116 TIGR03472 HpnI hopanoid biosyn 84.1 3 6.6E-05 46.7 7.8 112 553-666 40-164 (373)
117 PRK10714 undecaprenyl phosphat 84.1 3.2 6.9E-05 46.0 7.8 107 554-663 6-124 (325)
118 PLN02193 nitrile-specifier pro 83.9 93 0.002 36.3 21.6 179 189-380 113-301 (470)
119 cd00761 Glyco_tranf_GTA_type G 83.0 1.5 3.2E-05 39.6 3.9 101 558-659 1-108 (156)
120 cd02520 Glucosylceramide_synth 81.9 4.2 9.1E-05 40.6 7.1 97 555-653 2-111 (196)
121 cd06420 GT2_Chondriotin_Pol_N 81.2 3.6 7.7E-05 39.8 6.1 94 558-653 1-104 (182)
122 PHA03098 kelch-like protein; P 81.1 1.1E+02 0.0024 35.9 19.3 169 193-380 338-510 (534)
123 TIGR03111 glyc2_xrt_Gpos1 puta 80.7 3.9 8.5E-05 47.0 7.2 102 553-659 48-162 (439)
124 cd06435 CESA_NdvC_like NdvC_li 80.7 3.9 8.4E-05 41.6 6.4 105 557-662 1-118 (236)
125 cd06433 GT_2_WfgS_like WfgS an 80.5 3 6.4E-05 40.4 5.3 98 557-658 1-105 (202)
126 cd06438 EpsO_like EpsO protein 79.8 3.3 7.3E-05 40.8 5.4 105 558-664 1-117 (183)
127 cd04188 DPG_synthase DPG_synth 78.6 3.7 8E-05 41.3 5.4 104 558-663 1-118 (211)
128 KOG1021 Acetylglucosaminyltran 71.9 2 4.4E-05 50.0 1.7 105 618-741 331-435 (464)
129 PRK11498 bcsA cellulose syntha 71.7 7.6 0.00016 48.7 6.6 102 553-658 259-369 (852)
130 PLN02726 dolichyl-phosphate be 71.1 8.4 0.00018 40.0 5.9 103 554-662 9-128 (243)
131 PTZ00334 trans-sialidase; Prov 70.6 67 0.0014 40.2 14.1 124 194-326 267-409 (780)
132 PRK14583 hmsR N-glycosyltransf 70.5 16 0.00034 42.1 8.5 111 553-668 74-196 (444)
133 cd02514 GT13_GLCNAC-TI GT13_GL 70.4 6.2 0.00014 44.3 5.0 91 557-648 3-117 (334)
134 PRK14131 N-acetylneuraminic ac 70.3 1.9E+02 0.0041 32.5 17.7 159 193-367 34-231 (376)
135 PF14870 PSII_BNR: Photosynthe 69.4 1.6E+02 0.0035 32.8 15.6 161 218-414 83-245 (302)
136 PHA02713 hypothetical protein; 69.2 2.6E+02 0.0056 33.6 19.6 156 193-366 299-472 (557)
137 TIGR03030 CelA cellulose synth 68.2 5.2 0.00011 49.1 4.2 101 554-658 131-258 (713)
138 PRK10073 putative glycosyl tra 68.1 33 0.00072 38.0 10.1 107 555-663 7-120 (328)
139 PLN00033 photosystem II stabil 64.5 2E+02 0.0043 33.3 15.6 57 218-280 158-214 (398)
140 PHA03098 kelch-like protein; P 62.7 3.1E+02 0.0067 32.2 21.0 154 193-366 290-446 (534)
141 COG1216 Predicted glycosyltran 62.4 28 0.0006 37.9 8.0 112 555-667 4-124 (305)
142 PRK10018 putative glycosyl tra 58.0 24 0.00051 38.4 6.5 102 555-658 6-115 (279)
143 PF12217 End_beta_propel: Cata 52.4 2.6E+02 0.0057 31.0 12.9 107 133-256 145-255 (367)
144 KOG0379 Kelch repeat-containin 51.8 4.7E+02 0.01 30.9 20.4 210 197-425 70-287 (482)
145 PRK10063 putative glycosyl tra 51.3 50 0.0011 35.0 7.5 91 555-648 2-102 (248)
146 KOG4693 Uncharacterized conser 48.5 2.9E+02 0.0063 30.8 12.5 205 143-366 34-259 (392)
147 PTZ00260 dolichyl-phosphate be 47.8 25 0.00054 39.1 4.8 101 553-655 69-189 (333)
148 PLN02193 nitrile-specifier pro 46.7 5.4E+02 0.012 30.1 20.6 159 193-367 224-387 (470)
149 PRK13915 putative glucosyl-3-p 45.8 20 0.00044 39.4 3.7 114 553-667 30-157 (306)
150 KOG4441 Proteins containing BT 43.1 6.8E+02 0.015 30.3 18.2 156 193-368 328-486 (571)
151 PF10111 Glyco_tranf_2_2: Glyc 39.1 59 0.0013 35.0 5.9 110 557-666 1-129 (281)
152 PLN02153 epithiospecifier prot 36.5 6.2E+02 0.013 27.9 17.1 156 193-364 28-200 (341)
153 TIGR03547 muta_rot_YjhT mutatr 36.3 6.1E+02 0.013 27.8 17.3 160 192-367 12-210 (346)
154 PF12217 End_beta_propel: Cata 36.0 6.6E+02 0.014 28.1 15.1 166 194-368 22-211 (367)
155 cd04191 Glucan_BSP_ModH Glucan 34.6 1.2E+02 0.0027 32.4 7.4 100 557-658 2-125 (254)
156 TIGR03547 muta_rot_YjhT mutatr 34.5 6.5E+02 0.014 27.6 16.8 167 193-366 59-266 (346)
157 KOG1230 Protein containing rep 34.3 6.1E+02 0.013 30.0 12.8 146 267-424 100-253 (521)
158 COG0463 WcaA Glycosyltransfera 34.1 74 0.0016 29.0 4.9 99 554-654 3-108 (291)
159 KOG3738 Predicted polypeptide 34.0 85 0.0018 36.5 6.1 106 557-662 126-238 (559)
160 PF10282 Lactonase: Lactonase, 32.5 7.2E+02 0.016 27.5 16.0 197 203-421 3-211 (345)
161 TIGR03548 mutarot_permut cycli 31.3 7.2E+02 0.016 27.1 16.8 160 193-368 119-314 (323)
162 PRK05454 glucosyltransferase M 31.2 3.1E+02 0.0067 34.1 10.8 104 553-658 123-250 (691)
163 COG1215 Glycosyltransferases, 30.1 1.6E+02 0.0035 33.0 7.7 109 553-664 53-174 (439)
164 TIGR03548 mutarot_permut cycli 29.2 7.8E+02 0.017 26.8 18.6 161 193-367 68-233 (323)
165 PHA02713 hypothetical protein; 28.1 1.1E+03 0.024 28.3 17.3 153 191-366 345-521 (557)
166 KOG0379 Kelch repeat-containin 23.2 1.3E+03 0.028 27.3 16.1 160 194-366 119-284 (482)
167 KOG2287 Galactosyltransferases 22.5 2.6E+02 0.0055 31.7 7.5 110 628-745 187-302 (349)
168 PHA02790 Kelch-like protein; P 21.6 1.3E+03 0.029 26.9 18.3 141 193-367 314-456 (480)
169 cd06436 GlcNAc-1-P_transferase 20.6 1.7E+02 0.0036 29.2 5.0 98 558-658 1-118 (191)
170 COG4698 Uncharacterized protei 20.4 2.5E+02 0.0054 29.4 6.0 144 505-665 3-157 (197)
171 PF13632 Glyco_trans_2_3: Glyc 20.3 1.1E+02 0.0024 30.2 3.6 31 632-663 2-33 (193)
No 1
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=100.00 E-value=2.5e-127 Score=1047.18 Aligned_cols=676 Identities=45% Similarity=0.716 Sum_probs=615.6
Q ss_pred HHHHHHHHHHHhhheeecCCcccc---CCCCCCCcccCCCCCeEEEEEecCCCCccCccccccccCCCCCCCCCCCCeec
Q 045656 98 CFVVYVFVGFLYGWLALKKPYTVA---AGLSSFGCQEDSEGSWSIGVFFGNSPFSLKPIETANVWRDDSAAWPVANPIMT 174 (802)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~c~~~~~~~Wsig~~~g~~p~~l~p~~~~~~~~~~~~~w~~~NPVlt 174 (802)
|+.+|++|+..+||..+ .|-.|. +...+.+|+.+++| +||.+++++||+++|+|+.+ .+.+||++||++|
T Consensus 1 ~~~~~~fv~~~~A~~~~-~p~~hr~~~vt~~slv~~~l~ag--f~~w~~s~sp~~~~~~ekR~----i~d~~~v~~pa~~ 73 (691)
T KOG1022|consen 1 CFGFYAFVAATYAWFVF-PPHIHRTDHVTSSSLVCRELNAG--FIGWFYSDSPFSLKPIEKRN----ISDAWPVTNPAIT 73 (691)
T ss_pred Cccceeeeeccceeeec-CCccceeeeechhhhhhhhhccc--ceeeecCCCCcCCCcccccc----cccCccccccccC
Confidence 46789999999999766 777766 55778889999999 99999999999999999855 5689999999999
Q ss_pred cccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEE
Q 045656 175 CASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIY 254 (802)
Q Consensus 175 ~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iY 254 (802)
|+.-+ |-++.|+||||.+.+. +|+|.+-+....|+|.-+.|.|.+.||+..++.|.|.||+|+||+|..+++.|
T Consensus 74 p~~e~--g~~sc~~~dcf~~y~c----~~~~~KvyIy~l~~~vd~~s~~~~~T~s~ey~~lleA~~~S~yyt~n~N~acl 147 (691)
T KOG1022|consen 74 PASET--GLPSCFLADCFLYYQC----LFFETKVYIYMLGDIVDAKSIDKGATWSPEYIALLEAWHLSFYYTFNYNGACL 147 (691)
T ss_pred ccccc--CCccceehhhhhhhhc----cccccceeEEehhhhhhhhcccccccccHHHHHHHHHHHhccceecCCCceEE
Confidence 99888 5688999999999777 89999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCC
Q 045656 255 MMPESRAKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHK 334 (802)
Q Consensus 255 MiPEss~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp 334 (802)
|+||+..-++. |+.|+++++.+.....+.+...|.|-+||-+++...+++-++.+..++++.+++|.|+.|+
T Consensus 148 f~Ps~d~lnQn--------~l~~kl~~~ala~l~~wdrg~nH~~fnmLpGg~p~yntaldv~~d~a~~~gggf~tW~yr~ 219 (691)
T KOG1022|consen 148 FMPSSDELNQN--------PLSWKLEKVALAKLLVWDRGVNHEGFNMLPGGDPTYNTALDVGQDEAWYSGGGFGTWKYRK 219 (691)
T ss_pred EecchhhhccC--------cchHHHHHHHHhcccchhcccceeeEeeccCCCCCccccccCCcceeEEecCCcCcccccC
Confidence 99998766554 8899999998888999999999999999999998777877888999999999999999999
Q ss_pred CCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCCccceEEec-------cccCCCCCCcccccc
Q 045656 335 KNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE-------GRNAWNGARYHHLDA 407 (802)
Q Consensus 335 ~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~-------~~~~w~~~~~Hhld~ 407 (802)
+|||.... ++.+++|+.|..+|..||+.|+|...||..++.-.++-+.+.+++|.+ ....| +.+-||.|+
T Consensus 220 g~dv~ipv--~Sp~~v~~~~~~~g~r~~~l~~~q~n~~pr~r~~l~el~~kh~e~~l~l~~c~nlsl~~r-~~~qhH~~~ 296 (691)
T KOG1022|consen 220 GNDVYIPV--RSPGNVGRAFLYDGSRYRVLQDCQENYGPRIRVSLIELLSKHEERELELPFCLNLSLNSR-GVRQHHFDV 296 (691)
T ss_pred CCcccccc--ccccccCccccCCccceeeeeccccccchHhHHhHHHHHhhccceEEecchhcccccccc-chhhccccc
Confidence 99998864 568899999999999999999999999999999999888998888877 55666 788999999
Q ss_pred ccCCCCCeEEEEeCcccCCCCcchhhhhhHHHHHHHHHHHHHHHHhhcceeeeecccccc-ccCCCCCCccccccccccc
Q 045656 408 QQLSSGEWIAVMDGDRALSGDSVQRYILGCASVAAVGILVVLLGLLLGAVKCIIPLNWCA-QYSGKRSDSLLTWERESML 486 (802)
Q Consensus 408 ~~l~~g~~i~vvDG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 486 (802)
.+...++.+.+.||+|+.+|+..++.+||++..+.++++.+.++.++|.+.|.+|.-||+ .+.++.-+.|..++.+...
T Consensus 297 ~yp~~l~~~~fc~~~R~~r~gq~~lv~~~~a~c~pvi~vd~y~lpf~~Vvdw~~aSv~~~e~~~~~v~~~l~~i~~~~i~ 376 (691)
T KOG1022|consen 297 KYPSSLEFIGFCDGDRVTRGGQFHLVILGYASCAPVISVDIYLLPFLGVVDWIVASVWCMEYYAGKVMDALLNIETAGIC 376 (691)
T ss_pred ccccccceeeeEeccccccCCccceehhhhcccceeeeeehhhhhhhhhhhceeeeEEeehhhHHHHHHHhhcchhcchh
Confidence 999999999999999999999999999999999999999999999999999999999999 4466778889999998889
Q ss_pred chhhhhhccccccccccccccccCCcccchhhHHHHHHHhhheeeeeeeeeeCCCCCCcccccCCCCCceEEEEEecccC
Q 045656 487 CSKVRRFCSRLNRSASYLQGKIKPNTSIGRLVLAVIFVAGVALTCTGVKFIYGGNGADEAYMWKGHYSQFTMLTMTFDAR 566 (802)
Q Consensus 487 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gg~g~~~~~~~~g~~~qFTvvI~Ty~~R 566 (802)
+-+.||..+++||.....+.....+++++...+-++.....+.. ++.+.+++|+++.++.+.+++.++||++|+||+ |
T Consensus 377 sl~~r~~~~rl~rf~~~~~~~l~~~~~i~~~llp~v~~s~~~w~-~~~~~~~s~s~~~~~~~ik~~~qgFTlim~TYd-R 454 (691)
T KOG1022|consen 377 SLQLRRIGSRLNRFPPFKRGFLLLLSSIGKRLLPVVAISSRLWN-VGVRYIYSGSNPLFLPPIKGHSQGFTLIMLTYD-R 454 (691)
T ss_pred hhhhhhhhhhHhhcchHHHHHHHHHHHHhhhhhheeeecccccc-ccceecccCCCccccCCCCCcccceeeeeehHH-H
Confidence 99999999999999999998888777777765555444444445 889999999999999999999999999999999 9
Q ss_pred hhhHHHHHHHhcCCCCcceEEEEeCC--CCCCCCCC-CCCCCcEEEEEcCCcCccccCccCCCCCccEEEEecCCcccCH
Q 045656 567 LWNLKMYVKHYSRCSSVKEIVVVWNK--GEPPKLSD-LDSAVPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMMTC 643 (802)
Q Consensus 567 ~~~L~~~v~hya~~p~v~kIvVVWn~--~~pP~~~~-~~s~vPVrv~~~~~NSLNNRF~P~~~I~T~AVLslDDDv~l~~ 643 (802)
.++|+++|+||++||+|+||+||||| .+||+..+ ....|||+|+++++|||||||.|+++|||+|||++|||++++|
T Consensus 455 ~d~L~k~v~~ys~vPsL~kIlVVWNnq~k~PP~es~~~~~~VPlr~r~qkeNsLnNRF~~~peieT~AVL~IDDDIim~~ 534 (691)
T KOG1022|consen 455 VDLLKKLVKHYSRVPSLKKILVVWNNQGKNPPPESLEPDIAVPLRFRQQKENSLNNRFEPYPEIETEAVLEIDDDIIMPC 534 (691)
T ss_pred HHHHHHHHHHHhhCCCcceEEEEecCCCCCCChhhccccCCccEEEEehhhhhhhcccccCcccccceeEEecCceeeec
Confidence 99999999999999999999999998 45555543 3568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCceeecccccccCCCCCccccee-cccCcccceeeccceeeehhhhhhhccchhHHHHHHhhccCC
Q 045656 644 DDIERGFQVWRQHPDRIVGFYPRLVNGSPLRYRGEKY-ARRHKGYNMILTGAAFVDSQIAFNRYWSEQAKAGREFVDKFF 722 (802)
Q Consensus 644 deLeFAF~vWr~~PdRLVGF~~R~h~~~~~~y~~~~y-~~~~~~YSMVLTgaAF~Hr~Y~~~~Y~~~~p~~iR~~VDe~~ 722 (802)
|||+|||+||||||||||||+||.|.++. .|..|+| ++|+++||||||||||+|++| +++|++.||+.+|++||+++
T Consensus 535 ddldFgf~VWrefPD~lVGF~pR~H~~t~-s~~k~~y~sewt~qySMVLtGAAFfhk~y-~~lYt~~mPa~ir~~vDe~~ 612 (691)
T KOG1022|consen 535 DDLDFGFEVWREFPDRLVGFVPRFHVWTM-SYSKWKYESEWTNQYSMVLTGAAFFHKKY-LDLYTSDMPADIRVFVDEHM 612 (691)
T ss_pred chhHHHHHHHHhCccceeccCcceeeccc-ccchhhheeecCCceEEEEechhHHHHHH-HHHhhhcccchHHHhhhccc
Confidence 99999999999999999999999998664 3444555 459999999999999999976 88999999999999999999
Q ss_pred CchhhHHHHHHHHhhCCCccccccCceecccCCcccccccCCCCchhhHHHHHHHHHHHHhCCCCceeeeecccCCCCCC
Q 045656 723 NCEDVLLNYLYANASASKTVEYVRPAWAIDTSKFSGVAISRNTQVHYHKRSECLRKFAEMYGSFAGRKWEFGGRKDGWDL 802 (802)
Q Consensus 723 NCEDIaMNFLVS~~T~~~pv~~v~p~~~~~~~~~sg~~iS~~~~~H~~~Rs~Cln~F~~~fG~mPL~~~~f~~~~~~~~~ 802 (802)
|||||||||||||+||+++|+ ++|+..++++.++|+..++++.+|+.+|++|||+|+++||.|||+.++|+.+..|||.
T Consensus 613 NCEDIAMNFLiANatg~~aI~-Vkp~~~~~~~~~sg~~gls~~~~H~~kRS~CInrFv~iyGsMPLr~~e~~a~~~~~~~ 691 (691)
T KOG1022|consen 613 NCEDIAMNFLIANATGKPAIK-VKPRKKFKCPECSGVAGLSNDNQHMRKRSKCINRFVDIYGSMPLRYVEFRADPVGFDD 691 (691)
T ss_pred CHHHHHHHHHhhhccCCCceE-EeCcccccCcccccceeeccchHHHHHHHHHHHHHHHHhcCCceeEEEeeeccccCCC
Confidence 999999999999999999877 4577778999999987777789999999999999999999999999999999999983
No 2
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-79 Score=669.23 Aligned_cols=326 Identities=28% Similarity=0.381 Sum_probs=294.1
Q ss_pred eeeccccccccCCC--CCCcccccccccccchhhhhhccccccccccccccccCCcccchhhHHHHHHHhhhee------
Q 045656 459 CIIPLNWCAQYSGK--RSDSLLTWERESMLCSKVRRFCSRLNRSASYLQGKIKPNTSIGRLVLAVIFVAGVALT------ 530 (802)
Q Consensus 459 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------ 530 (802)
++.|...+++.... .+..|+++|+ ||.|++++| |++-..++.+..||.|..++|+++.+++++.++
T Consensus 545 sf~p~gsdpnv~~n~d~e~~lgp~Ep-py~Sp~y~r-----NfT~~~~~~y~~WN~~~~Pfyl~p~lpfdp~LPsEAkF~ 618 (907)
T KOG2264|consen 545 SFAPKGSDPNVQANFDDEYLLGPLEP-PYESPSYAR-----NFTEFQLYSYDFWNIIMSPFYLKPFLPFDPELPSEAKFF 618 (907)
T ss_pred cCCcCCCCCCcccCCCcccccCCCCC-CCCCchHhh-----hhhhhhhHHHHHhhhcCCccccCccCCCCccCcchhhhh
Confidence 45666665543222 5778999999 999999999 999999999999999999999999999999994
Q ss_pred --eeeeeee---eCCCCCCcccccCCC--CCceEEEEEecccChhhHHHHHHHhcCCCCcceEEEEeCCCCCCCCC--CC
Q 045656 531 --CTGVKFI---YGGNGADEAYMWKGH--YSQFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLS--DL 601 (802)
Q Consensus 531 --~~~~~~~---~gg~g~~~~~~~~g~--~~qFTvvI~Ty~~R~~~L~~~v~hya~~p~v~kIvVVWn~~~pP~~~--~~ 601 (802)
.+||||| .||+|+|++.+++|+ ++||||||+||+ |..-|.-.+..+...|+++|||||||++++|+.+ |.
T Consensus 619 gs~tGFRPIg~g~gGsGkEF~~aLGGN~pREQFTvVmLTYE-Re~VLm~sLeRL~gLPYLnKvvVVWNspk~P~ddl~WP 697 (907)
T KOG2264|consen 619 GSKTGFRPIGPGAGGSGKEFSKALGGNRPREQFTVVMLTYE-REAVLMGSLERLHGLPYLNKVVVVWNSPKDPPDDLTWP 697 (907)
T ss_pred ccCcCcccCCCCCCCchHHHHHHhcCCCccceEEEEEEEeh-HHHHHHHHHHHhhCCcccceEEEEeCCCCCChhcccCc
Confidence 7899999 779999999999997 599999999999 7888988999999999999999999999988775 45
Q ss_pred CCCCcEEEEEcCCcCccccCccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceeecccccccCCCCCccccee-
Q 045656 602 DSAVPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLVNGSPLRYRGEKY- 680 (802)
Q Consensus 602 ~s~vPVrv~~~~~NSLNNRF~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~R~h~~~~~~y~~~~y- 680 (802)
+.+|||.|++.++|||||||+|++.|+|+||||+|||+.+.+|||.|||+||||++||||||++|.|.|+... .+|.|
T Consensus 698 digvPv~viR~~~NsLNNRFlPwd~IETEAvLS~DDDahLrhdEI~fgFRVWRE~RDRiVGFPgRyHAwd~p~-~sw~YN 776 (907)
T KOG2264|consen 698 DIGVPVEVIRVAENSLNNRFLPWDRIETEAVLSLDDDAHLRHDEIIFGFRVWRENRDRIVGFPGRYHAWDGPH-DSWFYN 776 (907)
T ss_pred CCCCceEEEEcccccccccccCchhhhheeeeecccchhhhhhheeeeeehhhhcccccccCCcccccccCCC-cceeec
Confidence 7799999999999999999999999999999999999999999999999999999999999999999887532 23444
Q ss_pred cccCcccceeeccceeeehhhhhhhccchhHHHHHHhhccCCCchhhHHHHHHHHhhCCCccccccCceecccCCccccc
Q 045656 681 ARRHKGYNMILTGAAFVDSQIAFNRYWSEQAKAGREFVDKFFNCEDVLLNYLYANASASKTVEYVRPAWAIDTSKFSGVA 760 (802)
Q Consensus 681 ~~~~~~YSMVLTgaAF~Hr~Y~~~~Y~~~~p~~iR~~VDe~~NCEDIaMNFLVS~~T~~~pv~~v~p~~~~~~~~~sg~~ 760 (802)
+..+++.|||||||||+||||+ +.|+..||++||++||+.+|||||||||||||+|+||||+ ++.+|.+.|+++. ++
T Consensus 777 SNysCelSMvLTGAAF~HKyYl-ylYtY~mPqaIRd~Vdey~NCEDIAMNfLVSHiTRKPPiK-vTSRWTfrCPgCp-~s 853 (907)
T KOG2264|consen 777 SNYSCELSMVLTGAAFIHKYYL-YLYTYEMPQAIRDHVDEYKNCEDIAMNFLVSHITRKPPIK-VTSRWTFRCPGCP-ES 853 (907)
T ss_pred CCcceEEeeeehhhHHHHHHHH-HhhhhhchHHHHHHHHhhcCHHHHHHHHHHHHhccCCCce-eeceeEEeCCCCc-hh
Confidence 3458999999999999999984 5799999999999999999999999999999999999997 6789999999975 46
Q ss_pred ccCCCCchhhHHHHHHHHHHHHhCCCCceeeeeccc
Q 045656 761 ISRNTQVHYHKRSECLRKFAEMYGSFAGRKWEFGGR 796 (802)
Q Consensus 761 iS~~~~~H~~~Rs~Cln~F~~~fG~mPL~~~~f~~~ 796 (802)
+|.+ ..||++|++|||.|++.||||||..+|||..
T Consensus 854 Ls~d-dtHF~eRHkCinfF~kvyGY~PLl~tQfRaD 888 (907)
T KOG2264|consen 854 LSKD-DTHFEERHKCINFFTKVYGYNPLLFTQFRAD 888 (907)
T ss_pred hccC-CchHHHHHHHHHHHHHHhccChhhhhhhhhh
Confidence 7764 7899999999999999999999999999864
No 3
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=100.00 E-value=1.8e-71 Score=581.47 Aligned_cols=235 Identities=41% Similarity=0.676 Sum_probs=183.1
Q ss_pred eEEEEEe-cccChhhHHHHHHHhcCCCCcceEEEEeCCCCCCCCC--CCCCCCcEEEEEcCCcCccccCccCCCCCccEE
Q 045656 556 FTMLTMT-FDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLS--DLDSAVPVRIRVEKQNSLNNRFKLDPLIKTRGV 632 (802)
Q Consensus 556 FTvvI~T-y~~R~~~L~~~v~hya~~p~v~kIvVVWn~~~pP~~~--~~~s~vPVrv~~~~~NSLNNRF~P~~~I~T~AV 632 (802)
|||||+| |+ |...|+++|+||++||+|+||+||||++++||+. +...++||+|+++++|||||||+|+++|+||||
T Consensus 1 fTvvi~t~~~-R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~~~i~T~AV 79 (247)
T PF09258_consen 1 FTVVINTSYK-RSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPDPEIETDAV 79 (247)
T ss_dssp EEEEEEE-SS--HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGGS--TT--SSEE
T ss_pred CEEEEEeccc-chHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcCcCccccCcceE
Confidence 8999999 77 8999999999999999999999999997777643 345579999999999999999999999999999
Q ss_pred EEecCCcccCHHHHHHHHHHHhhCCCceeecccccccCCCCCcccceec-ccCcccceeeccceeeehhhhhhhccchhH
Q 045656 633 LELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLVNGSPLRYRGEKYA-RRHKGYNMILTGAAFVDSQIAFNRYWSEQA 711 (802)
Q Consensus 633 LslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~R~h~~~~~~y~~~~y~-~~~~~YSMVLTgaAF~Hr~Y~~~~Y~~~~p 711 (802)
|++|||+.++++||||||++||+||||||||+||+|.+++.+.+ |.|. +++++||||||+|||+|++| +++|++.+|
T Consensus 80 l~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~-~~Y~~~~~~~ySmvLt~aaf~h~~y-l~~Y~~~~p 157 (247)
T PF09258_consen 80 LSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGR-WKYTSEWSNEYSMVLTGAAFYHRYY-LELYTHWLP 157 (247)
T ss_dssp EEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTE-EEEE-SSS--BSEE-TTEEEEETHH-HHHHHT-S-
T ss_pred EEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccc-cccccCCCCcchhhhhhhHhhcchH-HHHHhcCcH
Confidence 99999999999999999999999999999999999976653333 4554 78999999999999999998 778999999
Q ss_pred HHHHHhhccCCCchhhHHHHHHHHhhCCCccccccCceecccCCccc---ccccCCCCchhhHHHHHHHHHHHHhCCCCc
Q 045656 712 KAGREFVDKFFNCEDVLLNYLYANASASKTVEYVRPAWAIDTSKFSG---VAISRNTQVHYHKRSECLRKFAEMYGSFAG 788 (802)
Q Consensus 712 ~~iR~~VDe~~NCEDIaMNFLVS~~T~~~pv~~v~p~~~~~~~~~sg---~~iS~~~~~H~~~Rs~Cln~F~~~fG~mPL 788 (802)
+++|++||+++||||||||||||++||+|||+ +.+.+.+++.+..+ .+||. +++|+++|++|||+|+++||+|||
T Consensus 158 ~~~r~~Vd~~~NCEDI~mNflvs~~T~~pPi~-v~~~~~~~~~~~~~~~~~gls~-~~~H~~~R~~Cln~f~~~fG~mPL 235 (247)
T PF09258_consen 158 ASIREYVDEHFNCEDIAMNFLVSNLTGKPPIK-VTSRKKFKCSKCSGGGSSGLSS-RPGHFKQRSKCLNRFAEIFGYMPL 235 (247)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHHHHHSS-SE---SSEEE-TTSSSS------CCC-STCHHHHHHHHHHHHHHHTTS---
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHhccCCCCc-ccccceeeccccccccccCCCC-CchhHHHHHHHHHHHHHHHCCCCc
Confidence 99999999999999999999999999999987 45777776665443 56776 468999999999999999999999
Q ss_pred eeeeecc
Q 045656 789 RKWEFGG 795 (802)
Q Consensus 789 ~~~~f~~ 795 (802)
++++++.
T Consensus 236 ~~s~~r~ 242 (247)
T PF09258_consen 236 VYSQFRA 242 (247)
T ss_dssp --B-EEE
T ss_pred eeEeEEe
Confidence 9999886
No 4
>cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=99.75 E-value=1.3e-16 Score=169.84 Aligned_cols=240 Identities=23% Similarity=0.309 Sum_probs=166.6
Q ss_pred CCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC-----------
Q 045656 170 NPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED----------- 238 (802)
Q Consensus 170 NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~----------- 238 (802)
|||++ .++|||++++.++++|+|.+.... ...|.+++|+| +.+|+..+.+|+.+
T Consensus 1 NPv~~-----------~~~~DP~i~~~~~~yy~~~t~~~~---~~~i~~~~S~D-l~~W~~~g~~~~~~~~~~~~~~~~~ 65 (288)
T cd09000 1 NPILP-----------GFYPDPSICRVGDDYYLVTSSFEY---FPGVPIFHSKD-LVNWELIGHALTRPSQLDLDGLPDS 65 (288)
T ss_pred CCcCC-----------CCCCCCCEEEECCEEEEEECCccc---CCCceEEECCC-cCCcEEcccccCCcccccccCCCCC
Confidence 78877 378999999999999998665432 23599999887 89999999888532
Q ss_pred CceeeeEEEEeCCEEEEEeCCCC---CCeeEEEEeccCCcCceeeeeccCCCccCCEEEEE-CCEEEEEEeCCCCC-CCC
Q 045656 239 WHLSFPYVFDYHGQIYMMPESRA---KGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINH-DGQYWLFGSDHSGF-GTT 313 (802)
Q Consensus 239 ~HLSyP~VF~~dG~iYMiPEss~---sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~-dG~wwLF~S~~~~~-g~~ 313 (802)
..+|+|.|+..+|++||+..... ...+.+..+.+....|+ ++.++....+||++|+. ||++||++...... +..
T Consensus 66 ~~~WAP~v~~~~g~yy~yy~~~~~~~~~~~~v~~s~~p~gpw~-~~~~~~~~~iDp~vf~d~dG~~Y~~~~~~~~~~~~~ 144 (288)
T cd09000 66 GGIWAPTIRYHDGTFYLITTNVDGMKDGGNFIVTADDPAGPWS-DPVWLDSGGIDPSLFFDDDGKVYLVGNGWDERRGYN 144 (288)
T ss_pred CceEcceEEEECCEEEEEEEecCCCCCCceEEEEeCCCCCCCc-CCEecCCCccCCceeEcCCCCEEEEecccCCccccC
Confidence 24899999999999999976544 45677777776656787 34445557899999999 89999987542110 001
Q ss_pred CCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCC-ccceEEe-
Q 045656 314 QNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILT-KNEYKEL- 391 (802)
Q Consensus 314 ~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt-~~~y~E~- 391 (802)
....|.+...+.........+ .++.... ....+.|..+|+.+|++|++...|...+...+.+.+.++++ +++.+..
T Consensus 145 ~~~~i~~~~l~~~~~~~~~~~-~~~~~~~-~~~~~Egp~v~k~~g~YYl~ys~~~~~~~~~v~~~~s~~~~Gp~~~~~~~ 222 (288)
T cd09000 145 GHGGIWLQEIDLETGKLLGEP-KVIWNGT-GGRWPEGPHLYKRDGWYYLLIAEGGTGYGHSVTVARSRSITGPYEPAPNN 222 (288)
T ss_pred CCCcEEEEEEccccCCCCCCc-EEEEeCC-CCCCcccCeEEEECCEEEEEEecCCCCCCeEEEEEEeCCCCCCCccCCCC
Confidence 123566655443222111111 1222221 12468999999999999999987766677789999998886 5544321
Q ss_pred c---cc--cCCCCCCccccccccCCCCCeEEEEeCcccCCC
Q 045656 392 E---GR--NAWNGARYHHLDAQQLSSGEWIAVMDGDRALSG 427 (802)
Q Consensus 392 ~---~~--~~w~~~~~Hhld~~~l~~g~~i~vvDG~r~~~~ 427 (802)
+ .. ..++-.+++|-++.+.++|+|++|+.+....++
T Consensus 223 ~il~~~~~~~~~~~g~gH~~~~~~~dG~~~~~yH~~~~~~~ 263 (288)
T cd09000 223 PILTNRDLPDSPIQATGHADLVQTPDGEWWAVFLATRPYGG 263 (288)
T ss_pred ceEEcCCCCCCcceeCCccceEECCCCCEEEEEEEEcCCCC
Confidence 1 11 234445788889999889999999998765443
No 5
>cd08984 GH43_5 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.67 E-value=6.6e-15 Score=157.64 Aligned_cols=226 Identities=17% Similarity=0.242 Sum_probs=155.4
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEE--CCEEEEEEEeeeccCCC--------ceEEEEEEeCCCCCceEeeeeecC
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQ--GNDLYLFYETKNSITMQ--------GDIGVAKSVDKGATWQQLGIALDE 237 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~--~g~~ylF~E~~~~~~~~--------G~I~va~S~D~g~tw~~~gvvLde 237 (802)
++|||+. . +|||+++.. ++++|||||.++..... ..|++++|.|.+.+|++.+.++..
T Consensus 3 ~~~~~~~-----------g-~~DP~i~~~~~~~~~~~~yT~~~~~~~~~~~~w~~~~~i~~a~S~D~l~~W~~~g~~~~~ 70 (294)
T cd08984 3 FRDPVYD-----------G-AADPTIIYNRETKEWWMFYTNRRANVPTPGVAWVHGTDIGVASSKDGGATWTYRGTADGL 70 (294)
T ss_pred ccCCCCC-----------C-CCCCEEEEeCCCCEEEEEEccccCcCCCCCcccCcCceEEEEEeCCCCCCCEEeeeeccC
Confidence 5799977 2 699999976 77999999976543222 379999987768999999876533
Q ss_pred -----CCceeeeEEEEeCCEEEEEe----CC----CCCCeeEEEEeccCCcCceeeeec-cC-CCccCCEEEEEC-CEEE
Q 045656 238 -----DWHLSFPYVFDYHGQIYMMP----ES----RAKGEVRLYRAVNFPLEWKLEKII-MK-KPLVDPFMINHD-GQYW 301 (802)
Q Consensus 238 -----~~HLSyP~VF~~dG~iYMiP----Es----s~sg~l~LYra~~FP~~We~~~~L-l~-~~~vDatI~~~d-G~ww 301 (802)
..++|+|.|+..+|++||+- .. .....+.+..+.++ ..|+.+..+ ++ ...+|+++|+.+ |+||
T Consensus 71 ~~~~~~~~~WAP~v~~~~G~y~myys~~~~~~~~~~~~~~i~~a~S~Dl-~~w~~~~~~~~~~~~~iD~~vf~~~dg~~y 149 (294)
T cd08984 71 EFECGRNTFWAPEVVWHGGVYHMYVTYIPGVPPDWGGPRRIVHYTSPNL-WDWTFVGRVDLDSDRVIDACVFKLPDGRWR 149 (294)
T ss_pred CCCCcccceeCceEEEECCEEEEEEEecCCCCcccCCCcEEEEEECCCc-CcceECCccccCCCCcEEeEEEEeCCCEEE
Confidence 35699999999999999993 21 22345666667775 679876653 44 358999999986 9999
Q ss_pred EEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEec
Q 045656 302 LFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVE 381 (802)
Q Consensus 302 LF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It 381 (802)
||++... ....+.++.+++ +..|++.. +++... .-.|..+|+.+|++|++..+ .+ ++.+++.+
T Consensus 150 l~y~~~~-----~~~~~~~a~s~D-~~~w~~~~--~~i~~~----~~EgP~v~k~~g~yym~~~~---~~--g~~~~~S~ 212 (294)
T cd08984 150 MWYKDER-----RGSTTYAADSED-LYHWTVEG--PVLGDR----PHEGPNVFRWKGYYWMIIDE---WK--GLGVYRSK 212 (294)
T ss_pred EEEECCC-----CCeEEEEEECCC-CCEEEeCC--ccccCC----CCCCCCeeEECCEEEEEEcC---Cc--eEEEEECC
Confidence 9998631 122445555555 45798754 444421 34678899999999998633 23 48899999
Q ss_pred cCCccceEEec-cc-cCCCC---CCccccccccCCCCCeEEEEeCcccC
Q 045656 382 ILTKNEYKELE-GR-NAWNG---ARYHHLDAQQLSSGEWIAVMDGDRAL 425 (802)
Q Consensus 382 ~Lt~~~y~E~~-~~-~~w~~---~~~Hhld~~~l~~g~~i~vvDG~r~~ 425 (802)
++.+|+++... .. ..+.. .+=| -++-..+ ++|+.++=....+
T Consensus 213 D~~~W~~~~~~l~~~~~~~~~~~~~~H-~~i~~~~-~~~y~~Yh~~~~~ 259 (294)
T cd08984 213 DAENWERQGGILLKPGTRPDDGAKGRH-ADVVVTG-DRAYIFYFTHPGR 259 (294)
T ss_pred ChhhcEECCeeeccCCCCccccccccC-CcEEEeC-CEEEEEEEecCCC
Confidence 99999887655 11 11211 2223 3665444 4677776544443
No 6
>cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended
Probab=99.64 E-value=1.6e-14 Score=153.21 Aligned_cols=194 Identities=22% Similarity=0.323 Sum_probs=131.5
Q ss_pred CCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC-----------C
Q 045656 170 NPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE-----------D 238 (802)
Q Consensus 170 NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde-----------~ 238 (802)
||||+ .++|||++++.++++|+|.+.... ...|.+.+|+| +.+|+..+.+++. .
T Consensus 1 NPvi~-----------~~~~DP~ii~~~~~yY~~~t~~~~---~~g~~~~~S~D-L~~W~~~g~~~~~~~~~~~~~~~~~ 65 (269)
T cd08989 1 NPILK-----------GDNPDPSIIRAGDDYYMASSTFEW---FPGVQIHHSTD-LVNWHLIGHPLDRLEDLDMKGNPYS 65 (269)
T ss_pred CCcCC-----------CCCCCCcEEEECCeEEEEECcccc---CCCcEEEECCc-cCCCEEccccccCccccccccCCCC
Confidence 88987 478999999999999999987432 23588999887 8999999988764 2
Q ss_pred CceeeeEEEEeCCEEEEEeCCC---CCCeeEEEEeccCCcCceee---------------------------------e-
Q 045656 239 WHLSFPYVFDYHGQIYMMPESR---AKGEVRLYRAVNFPLEWKLE---------------------------------K- 281 (802)
Q Consensus 239 ~HLSyP~VF~~dG~iYMiPEss---~sg~l~LYra~~FP~~We~~---------------------------------~- 281 (802)
.++|+|.|+.++|++||+--.+ ...++-+..+.+.-..|+.. +
T Consensus 66 ~~~WAP~v~~~~G~yy~yy~~~~~~~~~~i~va~sd~~~Gpw~~~~~~~~~~IDp~~f~D~dG~~Yl~~~~~~~i~l~~l 145 (269)
T cd08989 66 GGIWAPCLSYYDGKFWLIYTAVKVWKDCHNYLFTAEDITGPWSRPIFLNYGGFDPSLFHDDDGKKYLINMGWSGIRLQEY 145 (269)
T ss_pred CcEEcceEEEECCEEEEEEeccccCCCceEEEEEECCCCCCCcCCEECCCCcccCceEEcCCCCEEEEecCCCcEEEEEE
Confidence 3699999999999999983221 22334344442211122210 0
Q ss_pred -----ecc---------C----CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCC-
Q 045656 282 -----IIM---------K----KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGD- 342 (802)
Q Consensus 282 -----~Ll---------~----~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~- 342 (802)
.++ + ...+.|.+++++|+||||+|.. ..+ ......+++|++++|||++++.|||+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~G~YYl~~S~~-~~~--~~~~~~~~rs~~~~GP~~~~~~~pl~~~~~ 222 (269)
T cd08989 146 SPAEKKLIGKPLNKVIIKGTDDGLTEGPHLYKINGKYYLTTAEG-GTG--YIHEETIARSDKIHGPYEGRPDNPLVLWDT 222 (269)
T ss_pred ChhhCCCCCCceeEEEecCCCCCccccceEEEECCEEEEEEeeC-CCC--CCeeEEEEEECCCCCCCCcCCCCcceeecC
Confidence 001 1 1268999999999999999863 222 23357789999999999999999975421
Q ss_pred -C-CCCcccCCccEEE-CCeEEEEcccCCC---CCCceEEEEEec
Q 045656 343 -K-SLGARNGGRPFVY-DGNLYRVGQDCAE---SYGRRVRTFKVE 381 (802)
Q Consensus 343 -~-~~~aR~GG~vF~~-dGkLyRp~QdC~~---~YG~~L~l~~It 381 (802)
. ...+-.++.+|.. ||+.|.+...... ..||.+.|.+|+
T Consensus 223 ~~~~~~g~GH~s~v~~~~G~~~~~~h~~~~~~~~~gR~~~l~~i~ 267 (269)
T cd08989 223 PGNPLQKCGHASLVETPDGKWYLAHLTGRPGFCPLGRETALQPIE 267 (269)
T ss_pred CCCCcccCCCcCeEECcCCCEEEEEEeeCCCCCccCcceEEEEEE
Confidence 1 1222344666765 8998876654333 457777777763
No 7
>cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs
Probab=99.63 E-value=3.1e-14 Score=151.96 Aligned_cols=198 Identities=21% Similarity=0.292 Sum_probs=135.5
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC-CCceeeeEE
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE-DWHLSFPYV 246 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde-~~HLSyP~V 246 (802)
++||||+ .++|||.+++.++++||+.+.+.. ...|.+.+|.| +.+|+..+.+|+. .-.+|+|.|
T Consensus 6 ~~nPv~~-----------~~~~DP~i~~~~~~yY~~~t~~~~---~~gi~i~~S~D-L~~W~~~g~~~~~~~~~~WAP~i 70 (280)
T cd09002 6 YRNPILA-----------GDYPDPSILRDGEDYYMTHSSFKY---TPGLVIWHSRD-LVNWTPVGPALPEYEGDVWAPDL 70 (280)
T ss_pred EeCCccC-----------CCCCCCEEEEECCEEEEEEcchhc---CCCEEEEECCC-cCCceEccccccCCCCCEEcCee
Confidence 6899988 356999999999999998876432 34699999887 8999999988865 456999999
Q ss_pred EEeCCEEEEEeCC---CCCCeeEEEEeccCCc-Ccee----------e------------------------e-------
Q 045656 247 FDYHGQIYMMPES---RAKGEVRLYRAVNFPL-EWKL----------E------------------------K------- 281 (802)
Q Consensus 247 F~~dG~iYMiPEs---s~sg~l~LYra~~FP~-~We~----------~------------------------~------- 281 (802)
++++|++||+--. .+..++-+..+. .|. .|+. + +
T Consensus 71 ~~~~gkyy~yys~~~~~~~~~~~va~ad-~p~Gpw~~~~~~~~~~~IDp~vf~DddG~~Yl~~~~~~~~~l~~d~~~~~g 149 (280)
T cd09002 71 CKYDGRYYIYFPAIPEGGNWTNMVIWAD-SPEGPWSKPIDLKIGGCIDPGHVVDEDGNRYLFLSGGDRVRLTADGLSTDG 149 (280)
T ss_pred EEECCEEEEEEEeecCCCCceEEEEEEC-CCCCCCcCCEecCCCCccCCceEEcCCCCEEEEECCeeEEEECccccEecC
Confidence 9999999999321 122333333332 221 1221 0 0
Q ss_pred --e-ccC-----------C-CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCC--
Q 045656 282 --I-IMK-----------K-PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKS-- 344 (802)
Q Consensus 282 --~-Ll~-----------~-~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~-- 344 (802)
+ +.. . .++.|.|++++|+||||+|.....+......+.+++|++|+|||++++.|||+.....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~g~YYl~yS~g~~~~~~~~~~v~~ars~s~~GP~~~~~~~pi~~~~~~~~ 229 (280)
T cd09002 150 KLEHVYDGWRYPEDWVVEGFALEGPKLKKRNGYYYLTTAVGGTAGPPTGHMVVAARSKSVHGPWENSPYNPLVRTQSPQE 229 (280)
T ss_pred cCEEEecCcccccccccCCcccccceEEEECCEEEEEEccCCCCCCCCCEEEEEEECCCCCCCCccCCCCcEEecCCCCC
Confidence 0 000 0 2699999999999999998632211111235678899999999999999999975321
Q ss_pred -CCcccCCccEEE-CCeEEEEcccCC---CCCCceEEEEEec
Q 045656 345 -LGARNGGRPFVY-DGNLYRVGQDCA---ESYGRRVRTFKVE 381 (802)
Q Consensus 345 -~~aR~GG~vF~~-dGkLyRp~QdC~---~~YG~~L~l~~It 381 (802)
..+-.++.+|.. +|+.|.+.-... ...||.+.|.+++
T Consensus 230 ~~~g~GH~~i~~~~~g~~~~vyH~~~~~~~~~gR~~~l~~l~ 271 (280)
T cd09002 230 PWWSKGHATLVDGPDGQWWMVYHAYEKGYLTLGRQTLLEPIE 271 (280)
T ss_pred CceeCCCCcEEECCCCCEEEEEEeecCCCCCCCcEEEEEEEE
Confidence 112234666765 788888765322 3568888888885
No 8
>cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.63 E-value=3.6e-14 Score=149.85 Aligned_cols=198 Identities=22% Similarity=0.358 Sum_probs=132.6
Q ss_pred CCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC------CCceee
Q 045656 170 NPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE------DWHLSF 243 (802)
Q Consensus 170 NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde------~~HLSy 243 (802)
|||+. .++|||++++.+|++|||++..........|.+++|.| +.+|+..+.+|.. ...+|.
T Consensus 1 NPv~~-----------g~~~DP~i~~~~g~yY~~~t~~~~~~~~~~~~~~~S~D-l~~W~~~g~~l~~~~~~~~~~~~wA 68 (275)
T cd09004 1 NPILP-----------GWYADPEIRIFGGTYYIYPTSDGAGGEQTPFDVFSSKD-LVNWTKEGIILDMADVSWANRAAWA 68 (275)
T ss_pred CCcCC-----------CCCCCCCeEEECCEEEEEEeccCCCCCeeEEEEEECCC-CCCceECcccccccCCcccCCCcCC
Confidence 88987 47899999999999999998643221235688899877 8999999998863 246999
Q ss_pred eEEEEeCCEEEEE--------------eCC---------------------------CCCCeeEEEEe----------cc
Q 045656 244 PYVFDYHGQIYMM--------------PES---------------------------RAKGEVRLYRA----------VN 272 (802)
Q Consensus 244 P~VF~~dG~iYMi--------------PEs---------------------------s~sg~l~LYra----------~~ 272 (802)
|.|+.++|++||+ |+. ..+++..|+-. .+
T Consensus 69 P~v~~~~g~yy~yys~~~~i~va~s~~p~gp~~~~~~~p~~~~~~~~~~~iDp~vf~d~dG~~yl~~~~~~~~~i~~l~~ 148 (275)
T cd09004 69 PSVIERNGKYYFYFSANGGIGVAVADSPLGPFKDALGKPLIDKFTFGAQPIDPDVFIDDDGQAYLYWGGWGHCNVAKLNE 148 (275)
T ss_pred CeEEEECCEEEEEEEcCCcEEEEEeCCCCCCCCCCCCCccccCCcCCCCccCCCeEECCCCCEEEEEcCcCCEEEEEECC
Confidence 9999999999998 210 01122222210 00
Q ss_pred CCcCceeeeec--cC--CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcc
Q 045656 273 FPLEWKLEKII--MK--KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGAR 348 (802)
Q Consensus 273 FP~~We~~~~L--l~--~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR 348 (802)
-...|+.+... +. .-++.|.+++++|+||||+|... .. ..++.+.+++|++|+|||++... |++.+.......
T Consensus 149 d~~~~~~~~~~~~~~~~~~~EgP~i~k~~G~yyl~ys~~~-~~-~~~Y~~~ya~s~~~~GP~~~~~~-~~~~~~~~~~~g 225 (275)
T cd09004 149 DMISFDGERDGSEITPKNYFEGPFMFKRNGIYYLMWSEGG-WT-DPDYHVAYAMADSPLGPFERPGN-IILQQDPGIATG 225 (275)
T ss_pred CcccccCcceeeeccCCCceecceEEEECCEEEEEEECCC-CC-CCCceEEEEEcCCCCCCcccCCc-EeeeCCCCCccc
Confidence 01112222212 22 13799999999999999999742 11 13568889999999999998764 555432222234
Q ss_pred cC-CccEEEC--CeEEEEcccCC----CCCCceEEEEEecc
Q 045656 349 NG-GRPFVYD--GNLYRVGQDCA----ESYGRRVRTFKVEI 382 (802)
Q Consensus 349 ~G-G~vF~~d--GkLyRp~QdC~----~~YG~~L~l~~It~ 382 (802)
+| +.+|... |+.|....... ...+|.+.|.+++=
T Consensus 226 ~gH~~~~~~~~~~~~~~~yh~~~~~~~~~~~R~~~i~~~~~ 266 (275)
T cd09004 226 PGHHSVVNVPGTDEWYIVYHRRPLPETDGNHRQTCIDRMEF 266 (275)
T ss_pred CCCCEEEEeCCCCeEEEEEeCCCCCCCCCceeeEEEEEEEE
Confidence 44 4556554 88888777653 25688888888853
No 9
>cd08998 GH43_ABN_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=99.62 E-value=5.1e-14 Score=149.84 Aligned_cols=195 Identities=24% Similarity=0.292 Sum_probs=132.4
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCC-CCCceEeeeeecCC-----CceeeeEEEEe-CCEEEEEe
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDK-GATWQQLGIALDED-----WHLSFPYVFDY-HGQIYMMP 257 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~-g~tw~~~gvvLde~-----~HLSyP~VF~~-dG~iYMiP 257 (802)
..++| |.++..+|++||||........+.+|++++|.+- ...|+..+++++.. ...+.|.||.+ ||++||+-
T Consensus 56 ~~~wA-P~v~~~~g~yyl~ys~~~~~~~~~~i~va~s~~~~~gpw~~~~~v~~~~~~~~~~~~iDp~vf~d~dG~~Yl~~ 134 (288)
T cd08998 56 GNLWA-PDVIYLNGKYYLYYSVSTFGSNRSAIGLATSDTLPDGPWTDHGIVIESGPGRDDPNAIDPNVFYDEDGKLWLSF 134 (288)
T ss_pred CCccC-CeEEEECCEEEEEEEEEeCCCCceEEEEEEeCCCCCCCCEEcceeeecCCCCCCcccccCCEEEcCCCCEEEEe
Confidence 34566 9999999999999998665445678999998875 47899988877643 46889999998 88999997
Q ss_pred CCCCCCeeEEEEe---ccCCcCceeeee-ccC-----CCccCCEEEEECCEEEEEEeCCCCC-CCCCCCcEEEEEEcCCC
Q 045656 258 ESRAKGEVRLYRA---VNFPLEWKLEKI-IMK-----KPLVDPFMINHDGQYWLFGSDHSGF-GTTQNGQLEIWYSSSPF 327 (802)
Q Consensus 258 Ess~sg~l~LYra---~~FP~~We~~~~-Ll~-----~~~vDatI~~~dG~wwLF~S~~~~~-g~~~n~~L~i~~AdSpl 327 (802)
.+.. +.+.+-+. +..|..|..+.+ +.. ...++|.|++++|+||||+|..... +...++.+.+++|++|+
T Consensus 135 ~~~~-~~i~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~Egp~~~k~~g~YYl~~S~~~~~~~~~~~y~v~~~~s~~~~ 213 (288)
T cd08998 135 GSFW-GGIFLVELDPKTGKPLYPGGYGYNIAGRPRGHGAIEAPYIIYRGGYYYLFVSYGGCCAGEDSTYNIRVGRSKSIT 213 (288)
T ss_pred eecc-CCEEEEEeCcccCCccCCCCcceEEeccCCCCCceeeeEEEEeCCEEEEEEEcchhcCCCCCceEEEEEEcCCCC
Confidence 6532 23333333 234555532222 332 2489999999999999999863222 11245678899999999
Q ss_pred CCCeeCCCCCeeeCCC--------CCCcccC-CccEEE-CCeEEEEc--ccCCCCCCceEEEEEec
Q 045656 328 GPWKPHKKNPIYNGDK--------SLGARNG-GRPFVY-DGNLYRVG--QDCAESYGRRVRTFKVE 381 (802)
Q Consensus 328 GPW~~hp~NPI~~~~~--------~~~aR~G-G~vF~~-dGkLyRp~--QdC~~~YG~~L~l~~It 381 (802)
|||++.+.+|++.... .....+| +.+|+. +|+.|... ++.....++.+.+.+|+
T Consensus 214 GP~~~~~g~~~~~~~~~~~~~~~~~~~~g~GH~~~~~~~~g~~~~~yH~~~~~~~~~r~~~i~~l~ 279 (288)
T cd08998 214 GPYVDRNGNDMLNGGGTLYLLSSNGGYVGPGHNSVFTDDDGKDYLVYHYYDANDGGDHELRIRQLF 279 (288)
T ss_pred CCcCCCCCCchhhCCCcceeeccCCeEEcCCCCEEEECCCCCEEEEEEEEeCCCCCccEEEEEEEE
Confidence 9999888888765310 1112344 455655 56777644 33333445677777764
No 10
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=99.61 E-value=7.3e-14 Score=146.80 Aligned_cols=239 Identities=19% Similarity=0.177 Sum_probs=167.2
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCC-------c
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDW-------H 240 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~-------H 240 (802)
++|||+. .++|||++++.++++|||++..... ..|.+++|.| +.+|+..+.+|.... .
T Consensus 1 ~~NPv~~-----------~~~~DP~i~~~~~~yY~~~t~~~~~---~~i~v~~S~D-L~~W~~~g~~~~~~~~~~~~~~~ 65 (286)
T PF04616_consen 1 YTNPVID-----------GDYADPSIVRFGDGYYLYGTTDPEG---PGIPVWSSKD-LVNWTDAGNVLPPPPDWDWANNG 65 (286)
T ss_dssp EESSSBT-----------SSECSEEEEEETTEEEEEEEEBTCE---SBEEEEEESS-SSSEEEEEECESSTTTTSTTTSE
T ss_pred CCCCccC-----------CCCCCCEEEEECCEEEEEEEcCCCC---CeEEEEECCC-Ccccccceeeecccccccccccc
Confidence 4799987 4889999999999999999884322 5799999877 999999998885531 1
Q ss_pred e-eeeEEEEeCCEEEEEeC---CCCCCeeEEEEeccCCcCceeeeecc--CCCccCCEEEEEC-CEEEEEEeCCCCCCCC
Q 045656 241 L-SFPYVFDYHGQIYMMPE---SRAKGEVRLYRAVNFPLEWKLEKIIM--KKPLVDPFMINHD-GQYWLFGSDHSGFGTT 313 (802)
Q Consensus 241 L-SyP~VF~~dG~iYMiPE---ss~sg~l~LYra~~FP~~We~~~~Ll--~~~~vDatI~~~d-G~wwLF~S~~~~~g~~ 313 (802)
. |+|.|++++|++||+-- ......+.+.++.+.-..|+....+. ....+||++|+.+ |++||+++..... .
T Consensus 66 ~~WAP~i~~~~g~yy~y~~~~~~~~~~~~~va~a~~~~Gp~~~~~~~~~~~~~~iD~~vf~d~dG~~Yl~~~~~~~~--~ 143 (286)
T PF04616_consen 66 NIWAPEIHYINGKYYMYYSDSGGDAGSGIGVATADSPDGPWTDPGKIPIPGGNSIDPSVFVDDDGKYYLYYGSWDNG--D 143 (286)
T ss_dssp TTEEEEEEEETTEEEEEEEEESTSTTEEEEEEEESSTTS-EEEEEEEEEESSSSSSEEEEEETTSEEEEEEEESTTT--S
T ss_pred cccCCeEEEcCCeEEEEEEccCCCCCcceeEEEeCCcccccccccceeeccccccCceEEEecCCCcEEeCcccCCC--c
Confidence 2 89999999999999954 45556677888766435788765543 5679999999997 9999999874211 1
Q ss_pred CCCcEEEEEEcCCCCCCeeCCCCCeeeCC--CCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCCccceEEe
Q 045656 314 QNGQLEIWYSSSPFGPWKPHKKNPIYNGD--KSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKEL 391 (802)
Q Consensus 314 ~n~~L~i~~AdSplGPW~~hp~NPI~~~~--~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~ 391 (802)
....+.+..-+.....+...+...+.... .......|..+|+.+|++|++.=.+.......+.+.+.++++. -|+.+
T Consensus 144 ~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~g~yYl~~s~~~~~~~y~v~~~~s~~~~g-p~~~~ 222 (286)
T PF04616_consen 144 PGGGIYIAELDPDGTSLTGEPVVVIFPGDEGWDGGVVEGPFVFKHGGKYYLFYSAGGTGSPYQVGYARSDSPLG-PWEWK 222 (286)
T ss_dssp SEEEEEEEEEETTTSSEEEEECEEEEEESGSSTTTBEEEEEEEEETTEEEEEEEESGSSTTTEEEEEEESSTTS-GGEET
T ss_pred cceeEEeecccCccccccCcccccccccccccCCccccceEEEEcCCCEEEEEeccCCCCCceEEEeeccCCCC-ceeec
Confidence 12345566656666655544433333321 1234678899999999999987655444447777788887754 24444
Q ss_pred cc-------ccCCCCCCccccccccCCCCCeEEEEeCccc
Q 045656 392 EG-------RNAWNGARYHHLDAQQLSSGEWIAVMDGDRA 424 (802)
Q Consensus 392 ~~-------~~~w~~~~~Hhld~~~l~~g~~i~vvDG~r~ 424 (802)
.. .......+..|-.+-+-++|+|..++=+.+.
T Consensus 223 ~~~~~~~~~~~~~~~~g~gH~~~~~~~~g~~~~~yh~~~~ 262 (286)
T PF04616_consen 223 KGNPILFSRDGENGVYGPGHGSVFKDPDGRWYIVYHARNP 262 (286)
T ss_dssp TTCBCEGTTBTTSSCEEEEEEEEEEETTSEEEEEEEEEET
T ss_pred cCCeEEEeeccCCccccCccCCEEECCCCCEEEEEeeccC
Confidence 31 2233335566667777778888888766665
No 11
>cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins. This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.55 E-value=1.7e-13 Score=150.63 Aligned_cols=194 Identities=20% Similarity=0.339 Sum_probs=134.6
Q ss_pred CCCCCCC---CCCeeccccccCCCCCCceeeCee-eEEECCEEEEEEEeeeccC---------------CCceEEEEEEe
Q 045656 162 DSAAWPV---ANPIMTCASVSSAGFPSNFVADPF-FYLQGNDLYLFYETKNSIT---------------MQGDIGVAKSV 222 (802)
Q Consensus 162 ~~~~w~~---~NPVlt~~~v~d~~~~~~F~ADPF-ll~~~g~~ylF~E~~~~~~---------------~~G~I~va~S~ 222 (802)
.+.+|+- .-|++..+ . ....+.+||+ ++..+|+|||+|....... ..-+|.+|+|.
T Consensus 13 ~~~~~f~~~~~~p~~~~~---~--e~~i~r~dP~~Vi~~~g~Y~mwYs~~~~~~~~~~~~~~~~~~~~w~~y~I~~A~S~ 87 (349)
T cd08992 13 KGPEWFCEFRIYPKGGLG---Y--EEGVHRRDPSSVIKVDGLYHVWYTKSEGETDGFGTGDPEAKVFPWDKCEIWHATSK 87 (349)
T ss_pred cCcHHHhhcccCcccccc---c--ccCeecCCCceEEEECCEEEEEEEecCCcccccccCCccccccCCCceEEEEEECC
Confidence 3455654 45655422 1 1235789997 8899999999998532110 24579999987
Q ss_pred CCCCCceEeeeeecC-C------CceeeeEEEEeCCEEEEEeCCC-------CCCeeEEEEeccCCc-Cceeeee-cc--
Q 045656 223 DKGATWQQLGIALDE-D------WHLSFPYVFDYHGQIYMMPESR-------AKGEVRLYRAVNFPL-EWKLEKI-IM-- 284 (802)
Q Consensus 223 D~g~tw~~~gvvLde-~------~HLSyP~VF~~dG~iYMiPEss-------~sg~l~LYra~~FP~-~We~~~~-Ll-- 284 (802)
| +.+|+..+.+|.. + ..+++|.|++++|++||+-... ...++.+-.+.+ |. .|+.... ++
T Consensus 88 D-gv~W~~~g~~L~~~~~g~Wd~~~vwaP~Vi~~dGkyYM~Ysa~~~~~~~~~~~~IGvA~AdS-p~GpWtr~d~Pil~p 165 (349)
T cd08992 88 D-GWTWKEEGPAIGRGEKGAYDDRSVFTPEVLEHEGTYYLVYQVVKSPYLNRSFESIAMAVADS-PYGPWTKSDEPILSP 165 (349)
T ss_pred C-CCCceECCccccCCCCCCccccceECcEEEEECCEEEEEEEecccccCCCCcceEEEEEECC-cccccccCCCcEecC
Confidence 7 8999999988853 1 3489999999999999996431 124566666644 44 4764321 11
Q ss_pred ----------------------C-CCccCCEEEEECCEEEEEEeCCCCCCC-----CCCCcEEEEEEcCCCCCCeeCCCC
Q 045656 285 ----------------------K-KPLVDPFMINHDGQYWLFGSDHSGFGT-----TQNGQLEIWYSSSPFGPWKPHKKN 336 (802)
Q Consensus 285 ----------------------~-~~~vDatI~~~dG~wwLF~S~~~~~g~-----~~n~~L~i~~AdSplGPW~~hp~N 336 (802)
+ ..++||.|++++|+|||||+.+. ++. ..+..+++++|++|+|||++++.|
T Consensus 166 ~~dg~w~~d~~~~~~~~~~g~wD~~~v~~P~v~~~~g~yyL~Y~G~~-~g~~~~~~~~~~~iGvAvAdsP~GPf~r~~~n 244 (349)
T cd08992 166 SNDGIWKGDEDNRFLVKKKGSFDSHKVHDPCLFPFNGKFYLYYKGEQ-MGEEMTMGGRETKWGVAIADDPEGPYVKSPYN 244 (349)
T ss_pred CcCCceeeccCceeEeccCCCcccCceECCEEEEECCEEEEEEEccc-cCcccccCCCCceEEEEEECCCCCCCEeCCCC
Confidence 1 14789999999999999998753 222 124479999999999999999999
Q ss_pred CeeeCCCCCCcccCCccEEECCeE-EEEcccCCC
Q 045656 337 PIYNGDKSLGARNGGRPFVYDGNL-YRVGQDCAE 369 (802)
Q Consensus 337 PI~~~~~~~~aR~GG~vF~~dGkL-yRp~QdC~~ 369 (802)
||+.... . .-++.++|.+ .+++-||-+
T Consensus 245 Pi~~~~~-----~-~~~~~~~~~~~~~~~~d~~~ 272 (349)
T cd08992 245 PITNSGH-----E-TCVWQYKGGIAAMLTTDGPE 272 (349)
T ss_pred cccCCCC-----c-eEEEecCCceEEEEeccCCC
Confidence 9986421 1 1345556677 888888754
No 12
>cd08999 GH43_ABN_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=99.54 E-value=5.8e-13 Score=140.67 Aligned_cols=195 Identities=18% Similarity=0.242 Sum_probs=134.5
Q ss_pred ceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeee----cCCCceeeeEEEEe-CCEEEEEeCCC
Q 045656 186 NFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIAL----DEDWHLSFPYVFDY-HGQIYMMPESR 260 (802)
Q Consensus 186 ~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvL----de~~HLSyP~VF~~-dG~iYMiPEss 260 (802)
.++| |-++..+|++||||...+.......|++++++|....|+..+.++ +.......|.||.+ ||++||+=.+.
T Consensus 61 ~~wa-P~v~~~~g~y~~~y~~~~~~~~~~~i~~a~s~~p~g~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~Yl~~~~~ 139 (287)
T cd08999 61 DFWA-PDVSYVNGKYVLYYSARDKGSGGQCIGVATADSPLGPFTDHGKPPLCCPEGEGGAIDPSFFTDTDGKRYLVWKSD 139 (287)
T ss_pred CccC-ceEEEECCEEEEEEEeecCCCCCEEEEEEECCCCCCCCccCCcceEecCCCCCCccCCCeEECCCCCEEEEEecc
Confidence 4566 999999999999999876544556899999877556898766433 34567899999999 89999995432
Q ss_pred CC---CeeEEEEe--ccCCcCceeeee-cc-------CCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCC
Q 045656 261 AK---GEVRLYRA--VNFPLEWKLEKI-IM-------KKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPF 327 (802)
Q Consensus 261 ~s---g~l~LYra--~~FP~~We~~~~-Ll-------~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSpl 327 (802)
.. +...||.+ ..-...|+.+.. ++ ...++.|.|++++|+||||+|..........+.+.+++|++++
T Consensus 140 ~~~~~~~~~i~~~~ls~d~~~~~~~~~~i~~~~~~~~~~~~EgP~i~k~~g~yyl~~S~~~~~~~~~~y~i~~~~s~~~~ 219 (287)
T cd08999 140 GNSIGKPTPIYLQELSADGLTLTGEPVRLLRNDEDWEGPLVEAPYLVKRGGYYYLFYSAGGCCSGASTYAVGVARSKSLL 219 (287)
T ss_pred CCCCCCCceEEEEEeCCCCccccCCcEeeecccccccCCceEeeEEEEECCEEEEEEEcCCccCCCCCEEEEEEEeCCCc
Confidence 22 12224433 222234543332 22 1248999999999999999997422111125578899999999
Q ss_pred CCCeeCCCCCeee--CCCCCCcccCCccEEE-CCeEEEEcccCCC----CCCceEEEEEec
Q 045656 328 GPWKPHKKNPIYN--GDKSLGARNGGRPFVY-DGNLYRVGQDCAE----SYGRRVRTFKVE 381 (802)
Q Consensus 328 GPW~~hp~NPI~~--~~~~~~aR~GG~vF~~-dGkLyRp~QdC~~----~YG~~L~l~~It 381 (802)
|||++.+.+|+.. ......+-.++.+|.. +|+.|........ ..||.+.|.+|+
T Consensus 220 Gpw~~~~~~~~~~~~~~~~~~g~gh~~~~~~~~g~~~~~yh~~~~~~~~~~~R~~~i~~~~ 280 (287)
T cd08999 220 GPYVKAPGPPLLTSSGNGRWVGPGHNTVVTDDDGRDWLLYHAWDKADSGFTGRQMYLDRLE 280 (287)
T ss_pred CCcCCCCCCcceeccCCCeEEcCCCCeEEECCCCCEEEEEEEEcCCCCCCCCceEEEEEEE
Confidence 9999999888886 2211222234577776 7998887665433 578888888884
No 13
>cd08983 GH43_4 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.54 E-value=5.1e-13 Score=142.57 Aligned_cols=200 Identities=22% Similarity=0.290 Sum_probs=146.1
Q ss_pred CCCeeccccccCCCCCCceeeCeeeEEE--CCEEEEEEEeeecc---CCCceEEEEEEeCCCCCceEeeeeecC---CCc
Q 045656 169 ANPIMTCASVSSAGFPSNFVADPFFYLQ--GNDLYLFYETKNSI---TMQGDIGVAKSVDKGATWQQLGIALDE---DWH 240 (802)
Q Consensus 169 ~NPVlt~~~v~d~~~~~~F~ADPFll~~--~g~~ylF~E~~~~~---~~~G~I~va~S~D~g~tw~~~gvvLde---~~H 240 (802)
.||||+.. + + ..-+.||++++. +|+||||++..... .....|.+++|.| +.+|+..+.++.. .-+
T Consensus 5 ~~pvl~~~-~---g--~~~~rDP~I~r~~~~g~yy~~~T~~~~~~~~~~~~~i~i~~S~D-Lv~W~~~~~~~~~~~~~~~ 77 (276)
T cd08983 5 GNPVLTST-A---G--TKGLRDPFILRSHEGGKYYMIATDLKITGQTNGSQYIVVWESTD-LVNWTFQRLVKVNPPNAGN 77 (276)
T ss_pred CceEEeCC-c---C--CCCccCCeEEEcCCCCEEEEEEEecCcCCcccCCCeEEEEECCc-ccCCcccceeecCCCCcCc
Confidence 58999942 2 2 245799999987 89999999986421 1234799999977 9999999877522 357
Q ss_pred eeeeEEEEe--CCEEEEEeCCC------CCCeeEEEEecc-CCcCceeeeeccCC--CccCCEEEEECCEEEEEEeCCCC
Q 045656 241 LSFPYVFDY--HGQIYMMPESR------AKGEVRLYRAVN-FPLEWKLEKIIMKK--PLVDPFMINHDGQYWLFGSDHSG 309 (802)
Q Consensus 241 LSyP~VF~~--dG~iYMiPEss------~sg~l~LYra~~-FP~~We~~~~Ll~~--~~vDatI~~~dG~wwLF~S~~~~ 309 (802)
+|+|+||.+ +|++||+=-+. ......+|-++. -+..|+..+.+++. ..+|+++++.+|+||||+.+..
T Consensus 78 ~WAPev~~d~~~g~y~~~~s~~~~~~~~~~~~~~i~~~tt~Df~tft~p~~~~~~~~~~ID~~v~~~~g~~Yl~~k~~~- 156 (276)
T cd08983 78 TWAPEAFWDAERGQYVVYWSSRLYDNTGGFYNYRLYATTTSDFVTFTEPKVWIDLGANVIDTTVVKVGGTYYRFYKNEG- 156 (276)
T ss_pred EeCccceEcCCCCeEEEEEecccCCCCCCCccEEEEEEecCcccccCCCeEeecCCCCeEeeEEEEeCCEEEEEEecCC-
Confidence 999999977 68999993221 245677777763 23578876666653 5899999999999999997741
Q ss_pred CCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECC--eEEEEcccCCCCCCceEEEEEeccCCccc
Q 045656 310 FGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDG--NLYRVGQDCAESYGRRVRTFKVEILTKNE 387 (802)
Q Consensus 310 ~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dG--kLyRp~QdC~~~YG~~L~l~~It~Lt~~~ 387 (802)
+..+.++.++++.|+|+..... +... .....|..+|+.++ ++|++...+. +++-..++.+++....
T Consensus 157 -----~~~i~~~~s~~l~g~~~~~~~~-~~~~---~~~~EgP~v~k~~~~~~y~L~~d~y~---~~~Y~~~~t~d~~~~~ 224 (276)
T cd08983 157 -----SKDIELARSKSLTGPWTIVGTG-DAGW---GGAVEGPTVFKLNNGGGWYLYGDNYS---GGGYYPFDTSDLASTS 224 (276)
T ss_pred -----CCcEEEEEeCCCCCCceEeccc-ccCC---CCceeCCeEEEECCCCEEEEEEEECC---CCCeEEEEecCcCCCc
Confidence 2468889999999999876532 2111 23688999999976 8898888765 4566777787775544
Q ss_pred e
Q 045656 388 Y 388 (802)
Q Consensus 388 y 388 (802)
+
T Consensus 225 ~ 225 (276)
T cd08983 225 W 225 (276)
T ss_pred e
Confidence 3
No 14
>cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of
Probab=99.53 E-value=8.6e-13 Score=139.54 Aligned_cols=203 Identities=21% Similarity=0.288 Sum_probs=139.9
Q ss_pred CCCCCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeee-----cCCC
Q 045656 165 AWPVANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIAL-----DEDW 239 (802)
Q Consensus 165 ~w~~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvL-----de~~ 239 (802)
.|-....+++..+.... ....++| |.++..++++||||...+. .....|++++|++....|+..+.+. ....
T Consensus 43 ~W~~~g~~l~~~~~~~~-~~~~~wA-P~i~~~~g~yy~yy~~~~~-~~~~~igva~s~~p~Gpw~~~~~~~~~~~~~~~~ 119 (274)
T cd08990 43 NWTDHGVILSVTDFPAW-AKGQAWA-PDVVEKNGKYYLYFPARDK-DGGFAIGVAVSDSPAGPFKDAGGPILITTPSGGW 119 (274)
T ss_pred CcEECcccccCCCCCcc-ccCCcCc-CeEEEECCEEEEEEEeecC-CCceEEEEEEeCCCCCCCCCCCCccccccCCCCC
Confidence 35455666664433211 1345777 9999999999999998644 3467899999987566798876432 2356
Q ss_pred ceeeeEEEEe-CCEEEEEeCCCCCCeeEEEEeccCCcCceeeeeccC----------CCccCCEEEEECCEEEEEEeCCC
Q 045656 240 HLSFPYVFDY-HGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKIIMK----------KPLVDPFMINHDGQYWLFGSDHS 308 (802)
Q Consensus 240 HLSyP~VF~~-dG~iYMiPEss~sg~l~LYra~~FP~~We~~~~Ll~----------~~~vDatI~~~dG~wwLF~S~~~ 308 (802)
....|.||.+ ||++||+-.+. ..+.+-+..+-...|+-+...+. ...+.|.|++++|+||||+|...
T Consensus 120 ~~iDp~vf~d~dG~~yl~~~~~--~~~~~~~l~~d~~~~~~~~~~i~~~~~~~~~~~~~~EgP~i~k~~G~YYl~yS~~~ 197 (274)
T cd08990 120 YSIDPAVFIDDDGQAYLYWGGG--LGLRVAKLKPDMLSLKGEPVEIVITDGAGDELRRFFEAPWVHKRNGTYYLSYSTGD 197 (274)
T ss_pred CccCCcEEECCCCCEEEEECCc--CCEEEEEeCccccccCCCcEEEEeccccCCCCCCcccceeEEEECCEEEEEEECCC
Confidence 7889999887 68999996543 34555554433456754443221 23799999999999999999741
Q ss_pred CCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCC----CCCCceEEEEEec
Q 045656 309 GFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCA----ESYGRRVRTFKVE 381 (802)
Q Consensus 309 ~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~----~~YG~~L~l~~It 381 (802)
...+.+++|++|+|||+.. .+++... ....-.++.+|..+|+.|.+..... ..+||.+.|.+++
T Consensus 198 ------~~~~~~a~s~~p~GP~~~~--g~~~~~~-~~~g~gh~~~~~~~g~~y~~yh~~~~~~~~~~~R~~~~~~~~ 265 (274)
T cd08990 198 ------PEEIAYATSDSPLGPFTYR--GVILDPP-VNGGTNHGSIVEFKGQWYLFYHRATLSGGGDFRRSVCIDELE 265 (274)
T ss_pred ------CcEEEEEEcCCCCCCcccC--cEEecCC-CCCCCCCCeEEEECCeEEEEEECCcCCCCCCcceeEEEEEEE
Confidence 4578899999999999864 3555422 1223344666777899998776554 3467778888875
No 15
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=99.50 E-value=1.2e-12 Score=137.62 Aligned_cols=189 Identities=26% Similarity=0.354 Sum_probs=136.8
Q ss_pred eeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeC-CEEEEEeCCCCC----
Q 045656 188 VADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYH-GQIYMMPESRAK---- 262 (802)
Q Consensus 188 ~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~d-G~iYMiPEss~s---- 262 (802)
+| |.++..+|++||||. .........|.|+++++....|+..+.+.........|.||+++ |+.||+-.+...
T Consensus 68 WA-P~i~~~~g~yy~y~~-~~~~~~~~~~~va~a~~~~Gp~~~~~~~~~~~~~~iD~~vf~d~dG~~Yl~~~~~~~~~~~ 145 (286)
T PF04616_consen 68 WA-PEIHYINGKYYMYYS-DSGGDAGSGIGVATADSPDGPWTDPGKIPIPGGNSIDPSVFVDDDGKYYLYYGSWDNGDPG 145 (286)
T ss_dssp EE-EEEEEETTEEEEEEE-EESTSTTEEEEEEEESSTTS-EEEEEEEEEESSSSSSEEEEEETTSEEEEEEEESTTTSSE
T ss_pred cC-CeEEEcCCeEEEEEE-ccCCCCCcceeEEEeCCcccccccccceeeccccccCceEEEecCCCcEEeCcccCCCccc
Confidence 78 999999999999999 33334566799999988667999988765557889999999998 999999654433
Q ss_pred CeeEEEEeccCCcCceeee-e-ccC-------CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeC
Q 045656 263 GEVRLYRAVNFPLEWKLEK-I-IMK-------KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPH 333 (802)
Q Consensus 263 g~l~LYra~~FP~~We~~~-~-Ll~-------~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~h 333 (802)
..+.+-+..+--..+..+. . +.. ...+.|.+++++|+||||+|.. +....+++.+++|++|+|||+..
T Consensus 146 ~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~g~yYl~~s~~---~~~~~y~v~~~~s~~~~gp~~~~ 222 (286)
T PF04616_consen 146 GGIYIAELDPDGTSLTGEPVVVIFPGDEGWDGGVVEGPFVFKHGGKYYLFYSAG---GTGSPYQVGYARSDSPLGPWEWK 222 (286)
T ss_dssp EEEEEEEEETTTSSEEEEECEEEEEESGSSTTTBEEEEEEEEETTEEEEEEEES---GSSTTTEEEEEEESSTTSGGEET
T ss_pred eeEEeecccCccccccCcccccccccccccCCccccceEEEEcCCCEEEEEecc---CCCCCceEEEeeccCCCCceeec
Confidence 4555555433222333333 2 111 1489999999999999999963 22234789999999999999999
Q ss_pred CCCCeeeC---CCCCCcccCCccEEE-CCeEEEEcccCCC-----CCCceEEEEEec
Q 045656 334 KKNPIYNG---DKSLGARNGGRPFVY-DGNLYRVGQDCAE-----SYGRRVRTFKVE 381 (802)
Q Consensus 334 p~NPI~~~---~~~~~aR~GG~vF~~-dGkLyRp~QdC~~-----~YG~~L~l~~It 381 (802)
+.+|++.. ......-.++.+|.. ||+.|+..+.... ..+|.+.+.+|+
T Consensus 223 ~~~~~~~~~~~~~~~~g~gH~~~~~~~~g~~~~~yh~~~~~~~~~~~~R~~~i~~v~ 279 (286)
T PF04616_consen 223 KGNPILFSRDGENGVYGPGHGSVFKDPDGRWYIVYHARNPGGGGTGGGRSTRIQPVT 279 (286)
T ss_dssp TTCBCEGTTBTTSSCEEEEEEEEEEETTSEEEEEEEEEETSTSTGTTCEEEEEEEEE
T ss_pred cCCeEEEeeccCCccccCccCCEEECCCCCEEEEEeeccCCCCCCCCCcEEEEEEEE
Confidence 98998763 111222334667777 8999988776543 678888888874
No 16
>cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma
Probab=99.49 E-value=3.7e-12 Score=132.10 Aligned_cols=236 Identities=19% Similarity=0.230 Sum_probs=156.2
Q ss_pred eCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeec----C-----CCceeeeEEEEeCCEEEEEeCC
Q 045656 189 ADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALD----E-----DWHLSFPYVFDYHGQIYMMPES 259 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLd----e-----~~HLSyP~VF~~dG~iYMiPEs 259 (802)
|||++++.+|++|||++.... ....|.+++|.| +.+|+..+.+|. . ...++.|.|+.++|++||+--+
T Consensus 1 ~DP~v~~~~~~yyl~~t~~~~--~~~~i~i~~S~D-l~~W~~~~~~~~~~~~~~~~~~~~~~waP~v~~~~g~yyl~y~~ 77 (271)
T cd08978 1 ADPYILRYNGKYYLYGSTDDA--AGPGVQVWSSKD-LVNWRYEGAVFVAWRGRGEAKDSGGLWAPEVIYYEGKYYLYYSV 77 (271)
T ss_pred CCCcEEEECCEEEEEEecCCc--CCCcEEEEECCc-cCCcEECCcccccccccCCcccCCceeCCeEEEECCEEEEEEEc
Confidence 799999999999999998643 234689999887 899999998774 1 2469999999999999999654
Q ss_pred C----CCCeeEEEEeccCCcCceeee-----eccCCCccCCEEEEEC-CEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCC
Q 045656 260 R----AKGEVRLYRAVNFPLEWKLEK-----IIMKKPLVDPFMINHD-GQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGP 329 (802)
Q Consensus 260 s----~sg~l~LYra~~FP~~We~~~-----~Ll~~~~vDatI~~~d-G~wwLF~S~~~~~g~~~n~~L~i~~AdSplGP 329 (802)
. ....+.+..+.+ |..|.... ...+...+||++|..+ |++||+++... .+ .....+.++..++.+..
T Consensus 78 ~~~~~~~~~i~~a~s~d-~~g~~~~~~~~~~~~~~~~~iDp~vf~d~dg~~yl~~~~~~-~~-~~~~~i~~~~l~~~~~~ 154 (271)
T cd08978 78 SDFDYNGSGIGVATSED-PTGPFEDKVIRPPTSNNGNSIDPTVFKDDDGKYYLYYGSGD-PG-AGFGGIYISELTDDLTK 154 (271)
T ss_pred ccCCCCcccEEEEECCC-CCCCccccccCcCccCCCCccCcceEEcCCCCEEEEEeccc-CC-CCCCcEEEEEECccccc
Confidence 3 234555555544 45543322 1123468999999997 99999997631 11 12456777777766555
Q ss_pred CeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCC-CCCceEEEEEeccCC-ccceEEec------cccCCCCCC
Q 045656 330 WKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAE-SYGRRVRTFKVEILT-KNEYKELE------GRNAWNGAR 401 (802)
Q Consensus 330 W~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~-~YG~~L~l~~It~Lt-~~~y~E~~------~~~~w~~~~ 401 (802)
+...+..+..... ......|..+|+.+|++|++...+.. .++..+.+.+.+.+. +++.+... ..... ..+
T Consensus 155 ~~~~~~~~~~~~~-~~~~~EgP~~~k~~g~yyl~ys~~~~~~~~y~~~~~~s~~~~Gp~~~~~~~~~~~~~~~~~~-~~~ 232 (271)
T cd08978 155 PTGPPVLSASSGN-NNAVTEGPTIFKKNGYYYLTYSANGTGDYGYNIGYATSDSIDGPYVKKGGNAGLESDSAGFV-GVG 232 (271)
T ss_pred ccCCceeeeeecc-CCCceEccEEEEECCEEEEEEEeCCCCCCCceEEEEECCCCCCCcCcCCCCcceEeccCCCc-ccc
Confidence 5422211001111 12356889999999999998877654 677888888887663 44432111 11111 134
Q ss_pred ccccccccCCCCCeEEEEeCcccCCCCcchh
Q 045656 402 YHHLDAQQLSSGEWIAVMDGDRALSGDSVQR 432 (802)
Q Consensus 402 ~Hhld~~~l~~g~~i~vvDG~r~~~~~~~~~ 432 (802)
..|-++-+.++++|.+++=+.+...++.-|+
T Consensus 233 ~gh~~~~~~~~g~~~~~yh~~~~~~~~~~r~ 263 (271)
T cd08978 233 LGHGSVVRDKNGEWYLVYHAYNANSDNPNRK 263 (271)
T ss_pred CCCceEEECCCCCEEEEEEeecCCCCCCCce
Confidence 4454676666789999999888654333343
No 17
>cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins. This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f
Probab=99.49 E-value=3.9e-12 Score=135.35 Aligned_cols=205 Identities=14% Similarity=0.107 Sum_probs=146.1
Q ss_pred CceeeCeeeEEEC-CEEEEEEEeeeccCC------CceEEEEEEeCCCCCceEeeeeecCC-------CceeeeEEEEeC
Q 045656 185 SNFVADPFFYLQG-NDLYLFYETKNSITM------QGDIGVAKSVDKGATWQQLGIALDED-------WHLSFPYVFDYH 250 (802)
Q Consensus 185 ~~F~ADPFll~~~-g~~ylF~E~~~~~~~------~G~I~va~S~D~g~tw~~~gvvLde~-------~HLSyP~VF~~d 250 (802)
..++=||-+++.+ |+|||||........ ...|++|+|+|....|++.++||... .+.+.|.|++.+
T Consensus 10 ~~~~w~~~vi~~~~g~y~lfy~~~~~~~~~~~~~~~~~i~~A~S~~~~g~w~~~g~vl~~~~~~~wd~~~~~~P~vi~~~ 89 (291)
T cd08994 10 DYSVWGGSIIKGPDGKYHLFASRWPEGLGFHGWLPYSEIVHAVSDTPEGPYTFQEVVLPGRGGGYWDARTTHNPTIKRFD 89 (291)
T ss_pred CeEEEecceEECCCCcEEEEEEEccCCCCCCcccccceEEEEEcCCCCCCcEEeeeEcCCCCCCcccCCCccCCeEEEEC
Confidence 3455569999765 699999998654322 34699999988656899999999543 268899999999
Q ss_pred CEEEEEeCCCC----------CCeeEEEEeccCCcCcee-eeecc-CC-------CccCCEEEEE-CCEEEEEEeCCCCC
Q 045656 251 GQIYMMPESRA----------KGEVRLYRAVNFPLEWKL-EKIIM-KK-------PLVDPFMINH-DGQYWLFGSDHSGF 310 (802)
Q Consensus 251 G~iYMiPEss~----------sg~l~LYra~~FP~~We~-~~~Ll-~~-------~~vDatI~~~-dG~wwLF~S~~~~~ 310 (802)
|++||+..... ...+-+..+.+.-..|+. +..++ .. .++||++++. +|+|||+|+.....
T Consensus 90 g~yyl~Y~~~~~~~~~~~~~~~~~ig~a~s~~~~g~w~~~~~pvl~~~~~~~~~~~~~~p~v~~~~~g~~~m~y~g~~~~ 169 (291)
T cd08994 90 GKYYLYYIGNTDPGPRPGHRNNQRIGVAVSDSLDGPWKRSDQPILEPRPGGWDNLITSNPAVTRRPDGSYLLVYKGGTYN 169 (291)
T ss_pred CEEEEEEEcccCCcccccCCCCceEEEEEeCCCCCCcEECCCceecCCCCccccccccCCCeEEeCCCCEEEEEeccccC
Confidence 99999965422 244555555443347876 33333 21 2799999999 99999999875321
Q ss_pred CCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCC---CCceEEEEEeccCCccc
Q 045656 311 GTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAES---YGRRVRTFKVEILTKNE 387 (802)
Q Consensus 311 g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~---YG~~L~l~~It~Lt~~~ 387 (802)
.......+.+++|+++.|+|+++...||.... .........+|+.+|++|+..-.+... -...+.+++.+++-.|+
T Consensus 170 ~~~~~~~~gla~s~d~~g~~~~~~~~~v~~~~-~~~~~~dP~V~~~~g~yym~~~~~~~~~~~~~~~i~~a~S~Dg~~W~ 248 (291)
T cd08994 170 PTKGNRKYGVAIADSPTGPYTKVSGPPFIEPG-DNGNTEDPFVWYDKGQFHMIVKDMLGYVTGEKGGGAYFRSKDGIHWK 248 (291)
T ss_pred CCCCcEEEEEEEeCCCCCCCEECCCCccccCC-CCCceeCceEEEeCCEEEEEEeecccCcCCCCceEEEEECCCCCCce
Confidence 11123357899999999999999887875221 123445678899999999988776531 24588899999988887
Q ss_pred eEE
Q 045656 388 YKE 390 (802)
Q Consensus 388 y~E 390 (802)
++.
T Consensus 249 ~~~ 251 (291)
T cd08994 249 LAP 251 (291)
T ss_pred ecC
Confidence 663
No 18
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=99.46 E-value=6.1e-12 Score=133.51 Aligned_cols=221 Identities=19% Similarity=0.253 Sum_probs=145.8
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC-C--------
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE-D-------- 238 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde-~-------- 238 (802)
++||||+ ..+|||.+++.+++||+|.+.... .-.|.+.+|.| +.+|+..+.+++. +
T Consensus 2 ~~NPv~~-----------~~~~DP~v~~~~~~yY~~~t~~~~---~~gi~v~~S~D-l~~W~~~g~~~~~~~~~~~~~~~ 66 (269)
T cd09001 2 YTNPIIY-----------ADYPDPDVIRVGDDYYMVSTTMHY---SPGAPILHSKD-LVNWEIIGYVYDRLDDGDAYNLE 66 (269)
T ss_pred ccCCccC-----------CCCCCCeEEEECCEEEEEECCccc---CCCCEEEEccc-ccCCeEccccccccccccccccc
Confidence 5799987 366999999999999999997432 12488999877 8999999977642 1
Q ss_pred -------CceeeeEEEEeCCEEEEEeCCCCCCeeEEEEeccCCc-CceeeeeccCCCccCCEEEEE-CCEEEEEEeCCCC
Q 045656 239 -------WHLSFPYVFDYHGQIYMMPESRAKGEVRLYRAVNFPL-EWKLEKIIMKKPLVDPFMINH-DGQYWLFGSDHSG 309 (802)
Q Consensus 239 -------~HLSyP~VF~~dG~iYMiPEss~sg~l~LYra~~FP~-~We~~~~Ll~~~~vDatI~~~-dG~wwLF~S~~~~ 309 (802)
..+|+|.|...+|++||+--.. ...+.+..+.+ |. .|+.+..+. ..+||++|.. ||+.||++...
T Consensus 67 ~~~~~~~~~~WAP~v~~~~gkyy~yys~~-~~~~~v~~a~~-p~Gpw~~~~~~~--~~iDp~~f~D~dG~~Yl~~~~~-- 140 (269)
T cd09001 67 NGGNAYGKGQWAPSLRYHNGTFYVFFCTN-TGGTYIYTADD-PEGPWTKTALDG--GYHDPSLLFDDDGTAYLVYGGG-- 140 (269)
T ss_pred ccCCCCCCCEECCceEEECCEEEEEEEec-CCCeEEEEcCC-CCCCCcCCCcCC--CcccCceEEcCCCCEEEEeCCC--
Confidence 2589999999999999994333 34567777654 54 576543221 6799999985 89999998531
Q ss_pred CCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCC--CCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccC-Ccc
Q 045656 310 FGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKS--LGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEIL-TKN 386 (802)
Q Consensus 310 ~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~--~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~L-t~~ 386 (802)
.+.+..=++.+.... ...+++..... .....|..+|+.+|++|++.=.+. ..+..+.+.+.+++ .|+
T Consensus 141 -------~i~~~~l~~d~~~~~--~~~~~~~~~~~~~~~~~Egp~i~k~~G~YYl~~S~~~-~~~~~~~~~~s~~~~GP~ 210 (269)
T cd09001 141 -------TIRLVELSPDLTGVG--GKDQVIIDAGEEIGLGAEGSHLYKINGYYYIFNIAWG-GGGRTQTCLRSKSLTGPY 210 (269)
T ss_pred -------cEEEEEECcccCCcC--CCceEEEeCCCccccccccCeEEEECCEEEEEEecCC-CCCceEEEEEeCCCCCCc
Confidence 344443222222221 11222222111 236788999999999998764332 33457777787764 565
Q ss_pred ceEEeccccCCCCCCccccccccCCCCCeEEEE
Q 045656 387 EYKELEGRNAWNGARYHHLDAQQLSSGEWIAVM 419 (802)
Q Consensus 387 ~y~E~~~~~~w~~~~~Hhld~~~l~~g~~i~vv 419 (802)
+.+.......-...+.||-++-+.++|+|.++.
T Consensus 211 ~~~~~~~~~~~~~~~~gh~~~~~~~~G~~~~~~ 243 (269)
T cd09001 211 ESKVVLEDGSTGGNGPHQGGIVDTPDGEWYFML 243 (269)
T ss_pred CCcceecCCCCCCCCCCCEEEEECCCCCEEEEE
Confidence 544322211112346888778887888877665
No 19
>cd08999 GH43_ABN_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=99.46 E-value=7.4e-12 Score=132.30 Aligned_cols=239 Identities=15% Similarity=0.092 Sum_probs=147.6
Q ss_pred CCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC------Cceee
Q 045656 170 NPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED------WHLSF 243 (802)
Q Consensus 170 NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~------~HLSy 243 (802)
|||+. ..+|||++++.+++||||++... ...|.+++|.| +.+|+..+.+|+.. ..+|.
T Consensus 1 nPv~~-----------~~~~DP~i~~~~g~yy~~~t~~~----~~~i~~~~S~D-l~~W~~~g~~l~~~~~~~~~~~~wa 64 (287)
T cd08999 1 NPVID-----------GDFPDPSVIRVDGTYYAYATNGN----GPNVPIATSTD-LVNWTYLGDAFPKLPRWWTGGDFWA 64 (287)
T ss_pred CCccC-----------CCCCCCeEEEECCEEEEEEeCCC----CCcEEEEECCC-CCCcEECCcccCCCCCcccCCCccC
Confidence 89987 36799999999999999999742 26899999988 99999999888652 35999
Q ss_pred eEEEEeCCEEEEEeCCCC--CCeeEEEEec-cCCc-Cceeeee--cc--C--CCccCCEEEEE-CCEEEEEEeCCCCCCC
Q 045656 244 PYVFDYHGQIYMMPESRA--KGEVRLYRAV-NFPL-EWKLEKI--IM--K--KPLVDPFMINH-DGQYWLFGSDHSGFGT 312 (802)
Q Consensus 244 P~VF~~dG~iYMiPEss~--sg~l~LYra~-~FP~-~We~~~~--Ll--~--~~~vDatI~~~-dG~wwLF~S~~~~~g~ 312 (802)
|.|+..+|++||+--... .....++.|+ +-|. .|+.... +. + ...+||++++. ||++||++..... +.
T Consensus 65 P~v~~~~g~y~~~y~~~~~~~~~~~i~~a~s~~p~g~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~Yl~~~~~~~-~~ 143 (287)
T cd08999 65 PDVSYVNGKYVLYYSARDKGSGGQCIGVATADSPLGPFTDHGKPPLCCPEGEGGAIDPSFFTDTDGKRYLVWKSDGN-SI 143 (287)
T ss_pred ceEEEECCEEEEEEEeecCCCCCEEEEEEECCCCCCCCccCCcceEecCCCCCCccCCCeEECCCCCEEEEEeccCC-CC
Confidence 999999999999943221 2333444332 3343 5765432 22 1 25899999999 9999999975311 11
Q ss_pred CCCCcEEEEEEcCCCCCCeeCCCCCeeeCC--CCCCcccCCccEEECCeEEEEccc--C-CCCCCceEEEEEeccCC-cc
Q 045656 313 TQNGQLEIWYSSSPFGPWKPHKKNPIYNGD--KSLGARNGGRPFVYDGNLYRVGQD--C-AESYGRRVRTFKVEILT-KN 386 (802)
Q Consensus 313 ~~n~~L~i~~AdSplGPW~~hp~NPI~~~~--~~~~aR~GG~vF~~dGkLyRp~Qd--C-~~~YG~~L~l~~It~Lt-~~ 386 (802)
.....+.+..-+.-.-.|...+. .|+... .......|..+|+.+|++|++.-. | ...-...+.+.+.+++. ++
T Consensus 144 ~~~~~i~~~~ls~d~~~~~~~~~-~i~~~~~~~~~~~~EgP~i~k~~g~yyl~~S~~~~~~~~~~y~i~~~~s~~~~Gpw 222 (287)
T cd08999 144 GKPTPIYLQELSADGLTLTGEPV-RLLRNDEDWEGPLVEAPYLVKRGGYYYLFYSAGGCCSGASTYAVGVARSKSLLGPY 222 (287)
T ss_pred CCCceEEEEEeCCCCccccCCcE-eeecccccccCCceEeeEEEEECCEEEEEEEcCCccCCCCCEEEEEEEeCCCcCCc
Confidence 11112333321211223433221 121110 012246777889999999997643 2 22113457777777765 76
Q ss_pred ceEEec---cc-cCCCCCCccccccccCCCCCeEEEEeCcccCC
Q 045656 387 EYKELE---GR-NAWNGARYHHLDAQQLSSGEWIAVMDGDRALS 426 (802)
Q Consensus 387 ~y~E~~---~~-~~w~~~~~Hhld~~~l~~g~~i~vvDG~r~~~ 426 (802)
+.+... .. ..=.-.+..|-++-+-++|+|.+|+=+.+.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~g~gh~~~~~~~~g~~~~~yh~~~~~~ 266 (287)
T cd08999 223 VKAPGPPLLTSSGNGRWVGPGHNTVVTDDDGRDWLLYHAWDKAD 266 (287)
T ss_pred CCCCCCcceeccCCCeEEcCCCCeEEECCCCCEEEEEEEEcCCC
Confidence 654332 10 11001235566776666788888886666544
No 20
>cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.42 E-value=1.3e-11 Score=131.48 Aligned_cols=193 Identities=21% Similarity=0.306 Sum_probs=129.4
Q ss_pred ceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeee-ecCCCceeeeEEEEeC-CEEEEEeCCCC--
Q 045656 186 NFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIA-LDEDWHLSFPYVFDYH-GQIYMMPESRA-- 261 (802)
Q Consensus 186 ~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvv-Lde~~HLSyP~VF~~d-G~iYMiPEss~-- 261 (802)
.++| |.++..+|+|||||...........|++|+|+|....|+..+.. +........|.||.++ |++||+-....
T Consensus 54 ~~wa-P~v~~~~g~yyl~ys~~~~~~~~~~i~~a~s~~p~gp~~~~~~~~~~~~~~~iD~~vf~d~dG~~yl~~~~~~~~ 132 (294)
T cd08991 54 GFWA-PEVYYYNGKFYMYYSANDRDEKTEHIGVAVSDSPLGPFRDIKKPPIDFEPKSIDAHPFIDDDGKPYLYYSRNNYG 132 (294)
T ss_pred cEEc-cEEEEECCEEEEEEEeccCCCCcceEEEEEeCCCCCCCCcCCCCcccCCCcccCCceEECCCCCEEEEEEecCCC
Confidence 4555 99999999999999987554456789999987755678776533 3333456789999776 89999943211
Q ss_pred C--CeeEEEEeccCCcCceeeee-----cc-----------------C-CCccCCEEEEECCEEEEEEeCCCCCCCCCCC
Q 045656 262 K--GEVRLYRAVNFPLEWKLEKI-----IM-----------------K-KPLVDPFMINHDGQYWLFGSDHSGFGTTQNG 316 (802)
Q Consensus 262 s--g~l~LYra~~FP~~We~~~~-----Ll-----------------~-~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~ 316 (802)
. +.+.+.+...--..|+-+.+ +. + .-.+.|.|++++|+||||||.. .+. ..++
T Consensus 133 ~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~k~~g~yyl~ys~~-~~~-~~~y 210 (294)
T cd08991 133 NRVSDIYGTELVDDKLSIKTELVGPPIPVSAPGIDEIFERWRFGEGKDWRTNEGPTVLKHNGRYYLTYSAN-HYE-NEDY 210 (294)
T ss_pred CcccceEEEEEccceeeeccceeeccccccccccccccccccccccccCceeeCcEEEEECCEEEEEEECC-CCC-CCCc
Confidence 1 23444443221112221111 00 0 1389999999999999999863 222 2345
Q ss_pred cEEEEEEcCCCCCCeeCCCCCeeeCCCC--CCcccCCccEEE-C-CeEEEEcccCCC---CCCceEEEEEec
Q 045656 317 QLEIWYSSSPFGPWKPHKKNPIYNGDKS--LGARNGGRPFVY-D-GNLYRVGQDCAE---SYGRRVRTFKVE 381 (802)
Q Consensus 317 ~L~i~~AdSplGPW~~hp~NPI~~~~~~--~~aR~GG~vF~~-d-GkLyRp~QdC~~---~YG~~L~l~~It 381 (802)
.+.+++|++++|||++++.+||+..... ..+-.++.+|.. | |+.|++.+.... ..||.+.|.+|+
T Consensus 211 ~~~~a~s~~~~gp~~~~~~~pl~~~~~~~~~~g~gh~~~~~~~~g~~~~~~yh~~~~~~~~~~R~~~~~~~~ 282 (294)
T cd08991 211 GVGYATADSPLGPWTKYSNNPILRRNGDKGVEGTGHNSVVKSPDGGELYIVYHAHNATDEVEPRTMRIDPLY 282 (294)
T ss_pred eEEEEEcCCCCCCcEecCCCceEeeCCCCceEeCCCCceEECCCCCEEEEEEeeecCCCCCCCceEEEEEEE
Confidence 7889999999999999989999986422 222233556665 4 788887775432 258889888885
No 21
>cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=99.42 E-value=1.6e-11 Score=130.86 Aligned_cols=187 Identities=22% Similarity=0.287 Sum_probs=128.2
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEe-CCEEEEEeCCC---
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDY-HGQIYMMPESR--- 260 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~-dG~iYMiPEss--- 260 (802)
..++| |.++..++++||||...+.. ....|.|+++++....|+.... +.. ....|.||.+ ||+.||+=.+.
T Consensus 66 ~~~WA-P~v~~~~g~yy~yy~~~~~~-~~~~~~v~~s~~p~gpw~~~~~-~~~--~~iDp~vf~d~dG~~Y~~~~~~~~~ 140 (288)
T cd09000 66 GGIWA-PTIRYHDGTFYLITTNVDGM-KDGGNFIVTADDPAGPWSDPVW-LDS--GGIDPSLFFDDDGKVYLVGNGWDER 140 (288)
T ss_pred CceEc-ceEEEECCEEEEEEEecCCC-CCCceEEEEeCCCCCCCcCCEe-cCC--CccCCceeEcCCCCEEEEecccCCc
Confidence 46788 99999999999999986532 3457888988775567875432 322 5678999998 78999984332
Q ss_pred ----CCCeeEEEEeccCCcCceee--e-eccC----CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCC
Q 045656 261 ----AKGEVRLYRAVNFPLEWKLE--K-IIMK----KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGP 329 (802)
Q Consensus 261 ----~sg~l~LYra~~FP~~We~~--~-~Ll~----~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGP 329 (802)
..+.|.+-+.. +..|+.. . .+.+ ...+.|.|++++|+||||+|.. +......+.+++|++++||
T Consensus 141 ~~~~~~~~i~~~~l~--~~~~~~~~~~~~~~~~~~~~~~Egp~v~k~~g~YYl~ys~~---~~~~~~~v~~~~s~~~~Gp 215 (288)
T cd09000 141 RGYNGHGGIWLQEID--LETGKLLGEPKVIWNGTGGRWPEGPHLYKRDGWYYLLIAEG---GTGYGHSVTVARSRSITGP 215 (288)
T ss_pred cccCCCCcEEEEEEc--cccCCCCCCcEEEEeCCCCCCcccCeEEEECCEEEEEEecC---CCCCCeEEEEEEeCCCCCC
Confidence 12456665543 3334332 1 1222 2489999999999999999863 2223457889999999999
Q ss_pred CeeCCCCCeeeCCC---CCCcccC-CccEEE-CCeEEEEcccCC-------CCCCceEEEEEec
Q 045656 330 WKPHKKNPIYNGDK---SLGARNG-GRPFVY-DGNLYRVGQDCA-------ESYGRRVRTFKVE 381 (802)
Q Consensus 330 W~~hp~NPI~~~~~---~~~aR~G-G~vF~~-dGkLyRp~QdC~-------~~YG~~L~l~~It 381 (802)
|++.+.+||+.... .....+| +.+|.. ||+.|....... ...||.+.|.+|+
T Consensus 216 ~~~~~~~~il~~~~~~~~~~~g~gH~~~~~~~dG~~~~~yH~~~~~~~~~~~~~~R~~~i~~~~ 279 (288)
T cd09000 216 YEPAPNNPILTNRDLPDSPIQATGHADLVQTPDGEWWAVFLATRPYGGKGFCPLGRETFLAPVT 279 (288)
T ss_pred CccCCCCceEEcCCCCCCcceeCCccceEECCCCCEEEEEEEEcCCCCCccCcCccccEEEEEE
Confidence 99988899987531 0111233 556766 899888765432 1457888888875
No 22
>cd08988 GH43_ABN Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla
Probab=99.40 E-value=5.3e-11 Score=126.90 Aligned_cols=193 Identities=19% Similarity=0.324 Sum_probs=127.2
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCC-----ceEeeeeecC----CCceeeeEEEEe-CCEEE
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGAT-----WQQLGIALDE----DWHLSFPYVFDY-HGQIY 254 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~t-----w~~~gvvLde----~~HLSyP~VF~~-dG~iY 254 (802)
..++| |.++..+|++||||..-+.......|+++++++.... |+..+.++.. ......|.||.+ ||+.|
T Consensus 55 ~~~WA-P~v~~~~G~yylyys~~~~~~~~~~igva~s~~p~Gp~~~~~w~~~~~i~~~~~~~~~~~iDp~~f~DdDG~~Y 133 (279)
T cd08988 55 GHLWA-PDIYQHNGKFYLYYSVSAFGSNTSAIGLAVNKTIDGPSPDYGWEKGGVVISSDASDNYNAIDPAIIFDQHGQPW 133 (279)
T ss_pred CCEec-ceEEEECCEEEEEEEeccCCCCCceEEEEEcCCCCCCCcCcCccccCceEecCCCCCCCccCCceEEcCCCCEE
Confidence 35889 9999999999999987544444578999998774444 4333344332 234689998866 58999
Q ss_pred EEeCCCCCCeeEEEEeccCCcC----ceeeeeccC-----CCccCCEEEEECCEEEEEEeCCCCC-CCCCCCcEEEEEEc
Q 045656 255 MMPESRAKGEVRLYRAVNFPLE----WKLEKIIMK-----KPLVDPFMINHDGQYWLFGSDHSGF-GTTQNGQLEIWYSS 324 (802)
Q Consensus 255 MiPEss~sg~l~LYra~~FP~~----We~~~~Ll~-----~~~vDatI~~~dG~wwLF~S~~~~~-g~~~n~~L~i~~Ad 324 (802)
|+=.+.. +.+.+-+..+--.+ .+. ..++. .-++.|.|++++|+||||+|...++ +....+.+.+++|+
T Consensus 134 l~~g~~~-~gi~~~eL~~d~~~~~~~~~~-~~i~~~~~~~~~~Egp~i~k~~g~YYl~~S~g~~~~~~~~~y~v~~arS~ 211 (279)
T cd08988 134 LSFGSFW-GGIKLFELDKDTMKPAEPGEL-HSIAGRERSSAAIEAPFILYRGDYYYLFVSFGLCCRGGDSTYKIAVGRSK 211 (279)
T ss_pred EEecccC-CCEEEEEECcccCCccCCCcc-eEEeccCCCCCceEeeEEEEcCCeEEEEEEcCcccCCCCCCeEEEEEEeC
Confidence 9954321 34555444321011 111 12332 2479999999999999999874322 12245678899999
Q ss_pred CCCCCCeeCCCCCeeeCC--------CCCCcccCCccEEECCeEEEEcc--cCCCCCCceEEEEEe
Q 045656 325 SPFGPWKPHKKNPIYNGD--------KSLGARNGGRPFVYDGNLYRVGQ--DCAESYGRRVRTFKV 380 (802)
Q Consensus 325 SplGPW~~hp~NPI~~~~--------~~~~aR~GG~vF~~dGkLyRp~Q--dC~~~YG~~L~l~~I 380 (802)
+|+|||+..+.||++... ....+..++.+|..+|+.|.... ++.....+.+.|.+|
T Consensus 212 ~~~GPy~~~~~~p~~~~~~~~~~~~~~~~~g~GH~~v~~~~g~~~~~yH~~~~~~~~~r~~~i~~l 277 (279)
T cd08988 212 NITGPYLDKTGRSMLQGGGTILDKGNDRWVGPGHNSAYTDDGKDYLVLHAYDAADNGEPKLKILPL 277 (279)
T ss_pred CCCCCCCCCCCCCcccCCceEEEcCCCcEEcCCCCEEEeCCCCEEEEEEEeeCCCCCCcEEEEEec
Confidence 999999998889987531 11222245677777888887665 445666777766665
No 23
>cd08982 GH43_3 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.37 E-value=2.4e-11 Score=131.11 Aligned_cols=178 Identities=25% Similarity=0.409 Sum_probs=120.1
Q ss_pred eeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCCCCCeeEE
Q 045656 188 VADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESRAKGEVRL 267 (802)
Q Consensus 188 ~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss~sg~l~L 267 (802)
+|||++++.+++||++.+.. . ++.+|.| +.+|+..+.++. ..++|+|.|+.++|++||.-... .+.+
T Consensus 3 ~~DP~i~~~~g~YY~~~T~~-----~---~i~~S~D-L~~W~~~g~~~~-~~~~WAP~i~~~~g~~Y~~~~~~---~~~v 69 (295)
T cd08982 3 AADPVVILFKGEYYLFASMS-----G---GYWHSSD-LIDWDFIPTNSL-PDEGYAPAVFVYDGTLYYTASTY---NSRI 69 (295)
T ss_pred CCCCeEEEECCEEEEEEeCC-----C---CeEECCC-cCCceECCcccC-CCCcCcCEEEEECCEEEEEEeCC---CceE
Confidence 59999999999999998872 1 2578777 899999998765 66799999999999999872111 1122
Q ss_pred EEeccCCcC--ceee-------------------------------------------------eeccC-----------
Q 045656 268 YRAVNFPLE--WKLE-------------------------------------------------KIIMK----------- 285 (802)
Q Consensus 268 Yra~~FP~~--We~~-------------------------------------------------~~Ll~----------- 285 (802)
+.+.+ |.. |... ..++.
T Consensus 70 ~~s~~-p~gp~w~~~~~~~~~~~IDp~vf~DdDGk~Yl~~g~~~~~~i~~~eL~~d~~~~~g~~~~l~~~~~~~~~We~~ 148 (295)
T cd08982 70 YKTAD-PLSGPWEEVDKSFPPGLADPALFIDDDGRLYLYYGCSNNYPLRGVEVDPDTFRPIGEPVELIPGNPDKHGWERF 148 (295)
T ss_pred EEeCC-CCCCCccccccccCCCccCCceEECCCCCEEEEEecCCCCCeEEEEECcccCCccCcceEEEeCCCCCcCeEec
Confidence 22210 110 1100 00110
Q ss_pred ----------CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCccc-CCccE
Q 045656 286 ----------KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARN-GGRPF 354 (802)
Q Consensus 286 ----------~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~-GG~vF 354 (802)
.-.++|.+++++|+||||||.. +.+ ...+.+.+++|++|+|||+..+.|||+.+.......+ ++.+|
T Consensus 149 g~~~~~~~~~~~~EGP~i~k~~G~YYL~yS~~-~~~-~~~Y~v~~a~s~~p~GP~~~~~~~pil~~~~~~~~g~GH~s~v 226 (295)
T cd08982 149 GENNDNPDKTPWMEGAWMTKHNGKYYLQYAAP-GTE-FNTYADGVYVSDSPLGPFTYQPHNPFSYKPGGFITGAGHGSTF 226 (295)
T ss_pred CcccccccCCccccccEEEEECCEEEEEEeCC-Ccc-cCcEeEEEEEeCCCCCCCCcCCCCccccCCCCeEecCCcccEE
Confidence 0257899999999999999863 111 1345688999999999999988899987532111223 45666
Q ss_pred EE-CCeEEEEcc--cC-CCCCCceEEEEEec
Q 045656 355 VY-DGNLYRVGQ--DC-AESYGRRVRTFKVE 381 (802)
Q Consensus 355 ~~-dGkLyRp~Q--dC-~~~YG~~L~l~~It 381 (802)
.. +|+.|.+.. .. ....+|.+.+.+|+
T Consensus 227 ~~~~G~~~~~yh~~~~~~~~~~R~~~i~pv~ 257 (295)
T cd08982 227 QDKYGNYWHVGTMTVSVKHGFERRIGLFPAF 257 (295)
T ss_pred ECCCCCEEEEEEEECCCCCCCCceeEEEEEE
Confidence 64 899888742 22 24567888888886
No 24
>cd09003 GH43_AXH_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose
Probab=99.36 E-value=4.9e-11 Score=129.48 Aligned_cols=188 Identities=19% Similarity=0.247 Sum_probs=125.2
Q ss_pred ceeeCeeeEEEC----CEEEEEEEeeeccCCCceEEEEEEeCCCCCceEe-e-eeecCC-------CceeeeEEEEe-CC
Q 045656 186 NFVADPFFYLQG----NDLYLFYETKNSITMQGDIGVAKSVDKGATWQQL-G-IALDED-------WHLSFPYVFDY-HG 251 (802)
Q Consensus 186 ~F~ADPFll~~~----g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~-g-vvLde~-------~HLSyP~VF~~-dG 251 (802)
..+| |.++..+ +++||||.+ ....|+||+|++....|+.. + .++... ..-..|.||.+ ||
T Consensus 77 ~~WA-P~v~~~~~~~~gkyylyy~~-----~~~~igva~SdsP~GP~~~~~g~~l~~~~~~~~~~~~~~iDp~~f~DdDG 150 (311)
T cd09003 77 NSWA-PSIAVKKINGKGKFYLYFAN-----GGGGIGVLTADSPVGPWTDPLGKPLITGSTPGCAGVVWLFDPAVFVDDDG 150 (311)
T ss_pred ccCC-CceEEeccCCCCEEEEEEec-----CCCeEEEEEcCCCCCCcccCCCCeeecCCCCCccCCccccCCCeEECCCC
Confidence 4688 9999888 999999975 23469999988866789875 3 333321 23579999987 79
Q ss_pred EEEEEeCCCC-------CCeeEEEEeccCCcCceeeeeccCC--CccCCEEEEECCEEEEEEeCCCC---CCCCCCCcEE
Q 045656 252 QIYMMPESRA-------KGEVRLYRAVNFPLEWKLEKIIMKK--PLVDPFMINHDGQYWLFGSDHSG---FGTTQNGQLE 319 (802)
Q Consensus 252 ~iYMiPEss~-------sg~l~LYra~~FP~~We~~~~Ll~~--~~vDatI~~~dG~wwLF~S~~~~---~g~~~n~~L~ 319 (802)
+.||+=.+.. .+.+.+-+..+-...-+-+.+.+.. ..|.|.|++++|+|||++|...+ .+...++.+.
T Consensus 151 ~~Yl~~g~~~~~~~~~~~~~i~i~~l~~D~~~~~g~~~~i~~~~~~Egp~~~K~~G~YYL~ys~~~~~~~~~~~~~y~v~ 230 (311)
T cd09003 151 QGYLYFGGGVPGGRWANPNTARVIKLGDDMISVDGSAVTIDAPYFFEASGLHKINGTYYYSYCTNFGGRDPGKPPPGRIA 230 (311)
T ss_pred CEEEEECCccCCCccccCCCEEEEEeCCCceeccCCceEccCCCceEeeeEEEECCEEEEEEeCCCCccCCCCCCceeEE
Confidence 9999964322 2456666654322221112232322 47999999999999999986421 1233456788
Q ss_pred EEEEcCCCCCCeeCCCCCeeeCCCC---CCcccCCccEEECCeEEEEcccCC--------CCCCceEEEEEec
Q 045656 320 IWYSSSPFGPWKPHKKNPIYNGDKS---LGARNGGRPFVYDGNLYRVGQDCA--------ESYGRRVRTFKVE 381 (802)
Q Consensus 320 i~~AdSplGPW~~hp~NPI~~~~~~---~~aR~GG~vF~~dGkLyRp~QdC~--------~~YG~~L~l~~It 381 (802)
+++|++|+|||++. .||+..... ...-.++.+|..+|+.|.+..... ..++|.+.|.+++
T Consensus 231 y~~s~~~~GP~~~~--g~il~~~~~~~~~~g~gH~s~~~~~g~~y~vyH~~~~~~~~~~~~~~~R~~~i~~~~ 301 (311)
T cd09003 231 YMTSKNPMGPFTYK--GIILKNPGAFFGNGGNNHHSIFEFKGKWYIAYHARTLAKALGGATAGYRSPHIDELT 301 (311)
T ss_pred EEEcCCCCCCcccC--CEeccCCccccCCccCCCccEEEeCCeEEEEEeCCcCCccccCCCCceEEEEEEEEE
Confidence 89999999999973 466654321 112234567766999998776432 2456888888885
No 25
>cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68. Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32
Probab=99.34 E-value=1.5e-10 Score=120.43 Aligned_cols=188 Identities=16% Similarity=0.242 Sum_probs=126.4
Q ss_pred eCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeec---------CCCceeeeEEEEeC-CEEEEEeC
Q 045656 189 ADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALD---------EDWHLSFPYVFDYH-GQIYMMPE 258 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLd---------e~~HLSyP~VF~~d-G~iYMiPE 258 (802)
+||.++..+|++|||++..... ....|++++|.| +.+|+..+.+|. ....++.|.|+..+ |++||+--
T Consensus 1 ~DP~i~~~~g~yyl~~~~~~~~-~~~~~~~~~S~D-l~~W~~~~~~~~~~~~~~~~~~~~~~wap~v~~~~~g~~~l~yt 78 (286)
T cd08772 1 ADPNLIKYNGTYYIFFSGDDKN-GNPGIAHATSKD-LVNWTDHPVALVWWARRGGPKDSGGIWAPSIVYIENGKFYLYYT 78 (286)
T ss_pred CCCeEEEECCEEEEEEEccCCC-CCceEEEEECCC-cCcceECCccchhhcccCCCCCCCcEecceEEEcCCCCEEEEEE
Confidence 6999999999999999986543 456799999988 999999998873 13579999999998 99999943
Q ss_pred C----CCCCeeEEEEeccCCcCceeee--ecc--------CCCccCCEEEEEC-CEEEEEEeCCCCCCCCCCCcEEEEEE
Q 045656 259 S----RAKGEVRLYRAVNFPLEWKLEK--IIM--------KKPLVDPFMINHD-GQYWLFGSDHSGFGTTQNGQLEIWYS 323 (802)
Q Consensus 259 s----s~sg~l~LYra~~FP~~We~~~--~Ll--------~~~~vDatI~~~d-G~wwLF~S~~~~~g~~~n~~L~i~~A 323 (802)
+ .....+.+..+.+.-..|+... .++ ....+||++++.+ |+|||+++... ......+.++.+
T Consensus 79 ~~~~~~~~~~i~~a~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~y~~~~~~~---~~~~~~i~~~~s 155 (286)
T cd08772 79 DVSFTKNQQTIGVATAEDGNGPWTDYIGGPVLPDNPPAADVSNFRDPFVFEDDDGKWYLVFGSGD---HHNFGGIFLYES 155 (286)
T ss_pred eecCCCCceeEEEEEcCCCCCCCccccccccccCCCCccccccccCCeEEEcCCCCEEEEEcccc---CCCCCeEEEEEc
Confidence 3 2345566666655433455321 111 1248999999997 99999996531 112346777777
Q ss_pred cCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCC---CCCceEEEEEecc
Q 045656 324 SSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAE---SYGRRVRTFKVEI 382 (802)
Q Consensus 324 dSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~---~YG~~L~l~~It~ 382 (802)
+++ ..|+..+..++.........-.|..+|+.+|++|++.--... ..+.++...+.+.
T Consensus 156 ~d~-~~w~~~~~~~~~~~~~~~~~~E~P~~~~~~g~~yL~~s~~~~~~~~~~y~~~~~~~~~ 216 (286)
T cd08772 156 DDD-TTWKKGSAELLISEGEGGKQIEGPGLLKKNGKYYLFYSINGTGRVDSTYSIGYARSES 216 (286)
T ss_pred CCC-CCcccccceeeEeeccCCCceeccEEEEECCEEEEEEEcCCCcCCCCCcceEEEEccC
Confidence 654 457655533222221122355778889999999987643321 3345566666654
No 26
>cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma
Probab=99.34 E-value=1.5e-10 Score=120.10 Aligned_cols=193 Identities=18% Similarity=0.166 Sum_probs=129.8
Q ss_pred eeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEee--eeecCCCceeeeEEEEeC-CEEEEEeCCC---
Q 045656 187 FVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLG--IALDEDWHLSFPYVFDYH-GQIYMMPESR--- 260 (802)
Q Consensus 187 F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~g--vvLde~~HLSyP~VF~~d-G~iYMiPEss--- 260 (802)
.+-+|-++..+|+|||||...........|+++++.|-..-|+..+ ...........|.||.++ |++||+=.+.
T Consensus 58 ~~waP~v~~~~g~yyl~y~~~~~~~~~~~i~~a~s~d~~g~~~~~~~~~~~~~~~~~iDp~vf~d~dg~~yl~~~~~~~~ 137 (271)
T cd08978 58 GLWAPEVIYYEGKYYLYYSVSDFDYNGSGIGVATSEDPTGPFEDKVIRPPTSNNGNSIDPTVFKDDDGKYYLYYGSGDPG 137 (271)
T ss_pred ceeCCeEEEECCEEEEEEEcccCCCCcccEEEEECCCCCCCccccccCcCccCCCCccCcceEEcCCCCEEEEEecccCC
Confidence 3456999999999999999865433467899999877333344321 223345678899999987 9999994332
Q ss_pred -CCCeeEEEEeccCCcCceeeeec------cCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeC
Q 045656 261 -AKGEVRLYRAVNFPLEWKLEKII------MKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPH 333 (802)
Q Consensus 261 -~sg~l~LYra~~FP~~We~~~~L------l~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~h 333 (802)
+.+.|.+.+..+-...+..+.++ .....++|.+++++|+||||++... +. ...+.+.+++|++++|||+++
T Consensus 138 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~EgP~~~k~~g~yyl~ys~~~-~~-~~~y~~~~~~s~~~~Gp~~~~ 215 (271)
T cd08978 138 AGFGGIYISELTDDLTKPTGPPVLSASSGNNNAVTEGPTIFKKNGYYYLTYSANG-TG-DYGYNIGYATSDSIDGPYVKK 215 (271)
T ss_pred CCCCcEEEEEECcccccccCCceeeeeeccCCCceEccEEEEECCEEEEEEEeCC-CC-CCCceEEEEECCCCCCCcCcC
Confidence 25677787776533333222221 1124899999999999999998742 11 245688999999999999998
Q ss_pred CCCC--eeeCCCCCCccc-CCccEEE-CCeEEEEcccCC---CCCCceEEEEEec
Q 045656 334 KKNP--IYNGDKSLGARN-GGRPFVY-DGNLYRVGQDCA---ESYGRRVRTFKVE 381 (802)
Q Consensus 334 p~NP--I~~~~~~~~aR~-GG~vF~~-dGkLyRp~QdC~---~~YG~~L~l~~It 381 (802)
..+| ...........+ ++.+|.. +|+.|...+-.. ...++.+.+.+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~gh~~~~~~~~g~~~~~yh~~~~~~~~~~r~~~~~~~~ 270 (271)
T cd08978 216 GGNAGLESDSAGFVGVGLGHGSVVRDKNGEWYLVYHAYNANSDNPNRKLVINPLV 270 (271)
T ss_pred CCCcceEeccCCCccccCCCceEEECCCCCEEEEEEeecCCCCCCCceEEEEecc
Confidence 7763 221111112233 3566665 589999887654 3567888777763
No 27
>cd08984 GH43_5 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.30 E-value=4.1e-10 Score=120.90 Aligned_cols=170 Identities=16% Similarity=0.203 Sum_probs=118.0
Q ss_pred ceeeCeeeEEECCEEEEEEEeeecc----CCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeC-CEEEEEeCCC
Q 045656 186 NFVADPFFYLQGNDLYLFYETKNSI----TMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYH-GQIYMMPESR 260 (802)
Q Consensus 186 ~F~ADPFll~~~g~~ylF~E~~~~~----~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~d-G~iYMiPEss 260 (802)
.++| |.++..+|+|||||...... .....|++++|.| +.+|+..++++........|.||..+ |++||+-...
T Consensus 78 ~~WA-P~v~~~~G~y~myys~~~~~~~~~~~~~~i~~a~S~D-l~~w~~~~~~~~~~~~~iD~~vf~~~dg~~yl~y~~~ 155 (294)
T cd08984 78 TFWA-PEVVWHGGVYHMYVTYIPGVPPDWGGPRRIVHYTSPN-LWDWTFVGRVDLDSDRVIDACVFKLPDGRWRMWYKDE 155 (294)
T ss_pred ceeC-ceEEEECCEEEEEEEecCCCCcccCCCcEEEEEECCC-cCcceECCccccCCCCcEEeEEEEeCCCEEEEEEECC
Confidence 4667 99999999999999975432 2346899999887 78999988763334557899999876 8999995322
Q ss_pred CCCeeEEEEe-ccCCcCceeeeeccCC-CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCe
Q 045656 261 AKGEVRLYRA-VNFPLEWKLEKIIMKK-PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPI 338 (802)
Q Consensus 261 ~sg~l~LYra-~~FP~~We~~~~Ll~~-~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI 338 (802)
..+. .++-+ .+-+..|+....++.. ..+||.+++++|+|||++.. ...+.+|.|+++. +|++.. .++
T Consensus 156 ~~~~-~~~~a~s~D~~~w~~~~~~i~~~~~EgP~v~k~~g~yym~~~~--------~~g~~~~~S~D~~-~W~~~~-~~l 224 (294)
T cd08984 156 RRGS-TTYAADSEDLYHWTVEGPVLGDRPHEGPNVFRWKGYYWMIIDE--------WKGLGVYRSKDAE-NWERQG-GIL 224 (294)
T ss_pred CCCe-EEEEEECCCCCEEEeCCccccCCCCCCCCeeEECCEEEEEEcC--------CceEEEEECCChh-hcEECC-eee
Confidence 2222 22323 2335678875555543 47999999999999999843 1247899999988 999865 333
Q ss_pred eeCC---CCCCcccCCccEEECCeEEEEcccCC
Q 045656 339 YNGD---KSLGARNGGRPFVYDGNLYRVGQDCA 368 (802)
Q Consensus 339 ~~~~---~~~~aR~GG~vF~~dGkLyRp~QdC~ 368 (802)
.... .....-+.+.+|+.+|+.|++.....
T Consensus 225 ~~~~~~~~~~~~~~H~~i~~~~~~~y~~Yh~~~ 257 (294)
T cd08984 225 LKPGTRPDDGAKGRHADVVVTGDRAYIFYFTHP 257 (294)
T ss_pred ccCCCCccccccccCCcEEEeCCEEEEEEEecC
Confidence 3211 00111245788888899998887653
No 28
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=99.30 E-value=2.3e-10 Score=121.58 Aligned_cols=177 Identities=17% Similarity=0.225 Sum_probs=119.0
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEe-CCEEEEEeCCCCCC
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDY-HGQIYMMPESRAKG 263 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~-dG~iYMiPEss~sg 263 (802)
..++| |.+...+|++||+|... ...|.|+++++....|+..+.+. .-..|.||.+ ||+.||+=.+.
T Consensus 74 ~~~WA-P~v~~~~gkyy~yys~~-----~~~~~v~~a~~p~Gpw~~~~~~~----~~iDp~~f~D~dG~~Yl~~~~~--- 140 (269)
T cd09001 74 KGQWA-PSLRYHNGTFYVFFCTN-----TGGTYIYTADDPEGPWTKTALDG----GYHDPSLLFDDDGTAYLVYGGG--- 140 (269)
T ss_pred CCEEC-CceEEECCEEEEEEEec-----CCCeEEEEcCCCCCCCcCCCcCC----CcccCceEEcCCCCEEEEeCCC---
Confidence 45888 99999999999999873 34688888777666798776432 5678999874 78999996543
Q ss_pred eeEEEEeccCCcCce-eeeeccC------CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCC
Q 045656 264 EVRLYRAVNFPLEWK-LEKIIMK------KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKN 336 (802)
Q Consensus 264 ~l~LYra~~FP~~We-~~~~Ll~------~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~N 336 (802)
.+.+.+..+--.... ..+++++ ...+.|.|++++|+||||+|.. + .....+.+++|++++|||++.
T Consensus 141 ~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~G~YYl~~S~~---~-~~~~~~~~~~s~~~~GP~~~~--- 213 (269)
T cd09001 141 TIRLVELSPDLTGVGGKDQVIIDAGEEIGLGAEGSHLYKINGYYYIFNIAW---G-GGGRTQTCLRSKSLTGPYESK--- 213 (269)
T ss_pred cEEEEEECcccCCcCCCceEEEeCCCccccccccCeEEEECCEEEEEEecC---C-CCCceEEEEEeCCCCCCcCCc---
Confidence 555555432111221 1233443 2489999999999999999974 1 234577889999999999874
Q ss_pred CeeeCCCCCCcccC-CccEEE-CCeEEEEcccCCCCCCceEEEEEec
Q 045656 337 PIYNGDKSLGARNG-GRPFVY-DGNLYRVGQDCAESYGRRVRTFKVE 381 (802)
Q Consensus 337 PI~~~~~~~~aR~G-G~vF~~-dGkLyRp~QdC~~~YG~~L~l~~It 381 (802)
|++.........+| |.+|.. +|+.|...-.-....||.+.+.+++
T Consensus 214 ~~~~~~~~~~~~~gh~~~~~~~~G~~~~~~~~~~~~~gR~~~~~~~~ 260 (269)
T cd09001 214 VVLEDGSTGGNGPHQGGIVDTPDGEWYFMLFQDRGAVGRIPHLAPVT 260 (269)
T ss_pred ceecCCCCCCCCCCCEEEEECCCCCEEEEEcCCCCCCCCEEEEEEEE
Confidence 45543211223344 456765 7887665432234567877777774
No 29
>cd08998 GH43_ABN_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=99.30 E-value=2.5e-10 Score=121.74 Aligned_cols=220 Identities=20% Similarity=0.225 Sum_probs=140.4
Q ss_pred eeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC------------CceeeeEEEEeCCEEEE
Q 045656 188 VADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED------------WHLSFPYVFDYHGQIYM 255 (802)
Q Consensus 188 ~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~------------~HLSyP~VF~~dG~iYM 255 (802)
++||.+++.++++|||++.. .|.+++|.| +.+|+..+.+|..+ ..+++|.|+..+|++||
T Consensus 1 ~~DP~v~~~~~~yyl~~t~~-------~i~i~~S~D-l~~W~~~g~~~~~~~~~~~~~~~~~~~~~wAP~v~~~~g~yyl 72 (288)
T cd08998 1 VHDPSIIKEGDTYYLFSTGN-------GIAIAKSKD-LGNWTYVGSVFPTGPPWWSSIDPGGSGNLWAPDVIYLNGKYYL 72 (288)
T ss_pred CCCCeEEEECCEEEEEEcCC-------CeEEEECCC-CCCcEECCccccCCCccccccccCCCCCccCCeEEEECCEEEE
Confidence 47999999999999999873 799999987 89999999887542 45899999999999999
Q ss_pred EeCCC----CCCeeEEEEeccC-CcCceeeeeccCC-------CccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEEE
Q 045656 256 MPESR----AKGEVRLYRAVNF-PLEWKLEKIIMKK-------PLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIWY 322 (802)
Q Consensus 256 iPEss----~sg~l~LYra~~F-P~~We~~~~Ll~~-------~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~~ 322 (802)
+-... ...++.+..+.+. ...|+....++.. ..+||++|.. +|++||++... ...+.+..
T Consensus 73 ~ys~~~~~~~~~~i~va~s~~~~~gpw~~~~~v~~~~~~~~~~~~iDp~vf~d~dG~~Yl~~~~~-------~~~i~~~~ 145 (288)
T cd08998 73 YYSVSTFGSNRSAIGLATSDTLPDGPWTDHGIVIESGPGRDDPNAIDPNVFYDEDGKLWLSFGSF-------WGGIFLVE 145 (288)
T ss_pred EEEEEeCCCCceEEEEEEeCCCCCCCCEEcceeeecCCCCCCcccccCCEEEcCCCCEEEEeeec-------cCCEEEEE
Confidence 95432 2334566666665 3679875544431 4899999999 99999998642 12344444
Q ss_pred EcCCCCCCeeCC-CCC--eeeCCCCCCcccCCccEEECCeEEEEccc--CC--CCCCceEEEEEeccCC-ccceEEec--
Q 045656 323 SSSPFGPWKPHK-KNP--IYNGDKSLGARNGGRPFVYDGNLYRVGQD--CA--ESYGRRVRTFKVEILT-KNEYKELE-- 392 (802)
Q Consensus 323 AdSplGPW~~hp-~NP--I~~~~~~~~aR~GG~vF~~dGkLyRp~Qd--C~--~~YG~~L~l~~It~Lt-~~~y~E~~-- 392 (802)
-+...+.=. +. ..+ |...........|..+|+.+|++|++.=. |. ...+..|.+++.+.+. |++..+..
T Consensus 146 l~~~~~~~~-~~~~~~~~i~~~~~~~~~~Egp~~~k~~g~YYl~~S~~~~~~~~~~~y~v~~~~s~~~~GP~~~~~g~~~ 224 (288)
T cd08998 146 LDPKTGKPL-YPGGYGYNIAGRPRGHGAIEAPYIIYRGGYYYLFVSYGGCCAGEDSTYNIRVGRSKSITGPYVDRNGNDM 224 (288)
T ss_pred eCcccCCcc-CCCCcceEEeccCCCCCceeeeEEEEeCCEEEEEEEcchhcCCCCCceEEEEEEcCCCCCCcCCCCCCch
Confidence 333221100 00 012 12111012357889999999999997432 22 1345578888887653 54322211
Q ss_pred -c----------ccCCCCCCccccccccCCCCCeEEEEeCcccC
Q 045656 393 -G----------RNAWNGARYHHLDAQQLSSGEWIAVMDGDRAL 425 (802)
Q Consensus 393 -~----------~~~w~~~~~Hhld~~~l~~g~~i~vvDG~r~~ 425 (802)
. ...+. +.-|-++-+-++|+|.+|+=+....
T Consensus 225 ~~~~~~~~~~~~~~~~~--g~GH~~~~~~~~g~~~~~yH~~~~~ 266 (288)
T cd08998 225 LNGGGTLYLLSSNGGYV--GPGHNSVFTDDDGKDYLVYHYYDAN 266 (288)
T ss_pred hhCCCcceeeccCCeEE--cCCCCEEEECCCCCEEEEEEEEeCC
Confidence 0 11121 2334466666777888887665543
No 30
>cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68. Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32
Probab=99.28 E-value=4.8e-10 Score=116.61 Aligned_cols=178 Identities=22% Similarity=0.310 Sum_probs=122.5
Q ss_pred ceeeCeeeEEEC-CEEEEEEEeeeccCCCceEEEEEEeCCCCCceEee--eee------cCCCceeeeEEEEeC-CEEEE
Q 045656 186 NFVADPFFYLQG-NDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLG--IAL------DEDWHLSFPYVFDYH-GQIYM 255 (802)
Q Consensus 186 ~F~ADPFll~~~-g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~g--vvL------de~~HLSyP~VF~~d-G~iYM 255 (802)
..+| |.++..+ |++||||+..........|++++|.|....|+..+ +++ .+..+...|.||+++ |++||
T Consensus 59 ~~wa-p~v~~~~~g~~~l~yt~~~~~~~~~~i~~a~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~y~ 137 (286)
T cd08772 59 GIWA-PSIVYIENGKFYLYYTDVSFTKNQQTIGVATAEDGNGPWTDYIGGPVLPDNPPAADVSNFRDPFVFEDDDGKWYL 137 (286)
T ss_pred cEec-ceEEEcCCCCEEEEEEeecCCCCceeEEEEEcCCCCCCCccccccccccCCCCccccccccCCeEEEcCCCCEEE
Confidence 3555 9999888 99999999876434567899999988555676543 122 134678999999998 99999
Q ss_pred EeCCC---CCCeeEEEEeccCCcCceeeeec--c-----CCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcC
Q 045656 256 MPESR---AKGEVRLYRAVNFPLEWKLEKII--M-----KKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSS 325 (802)
Q Consensus 256 iPEss---~sg~l~LYra~~FP~~We~~~~L--l-----~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdS 325 (802)
+=.+. ..+.|.+++..+. ..|+..... . ....+.|.+++++|+||||+|...+......+.+.++++++
T Consensus 138 ~~~~~~~~~~~~i~~~~s~d~-~~w~~~~~~~~~~~~~~~~~~E~P~~~~~~g~~yL~~s~~~~~~~~~~y~~~~~~~~~ 216 (286)
T cd08772 138 VFGSGDHHNFGGIFLYESDDD-TTWKKGSAELLISEGEGGKQIEGPGLLKKNGKYYLFYSINGTGRVDSTYSIGYARSES 216 (286)
T ss_pred EEccccCCCCCeEEEEEcCCC-CCcccccceeeEeeccCCCceeccEEEEECCEEEEEEEcCCCcCCCCCcceEEEEccC
Confidence 96543 3577889988764 678765431 1 12589999999999999999975321113456888999999
Q ss_pred CCCCCeeCCCCCeee----CCCCCCcccCCccEEE-CCeEEEEcc
Q 045656 326 PFGPWKPHKKNPIYN----GDKSLGARNGGRPFVY-DGNLYRVGQ 365 (802)
Q Consensus 326 plGPW~~hp~NPI~~----~~~~~~aR~GG~vF~~-dGkLyRp~Q 365 (802)
++|||++...+|+.. .......-.++.+|.. +|+.|++.-
T Consensus 217 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 261 (286)
T cd08772 217 DTGPYVPKSDTSGGLSLTGGNDGGVGPYHAAAFNDAGGRVVLVYH 261 (286)
T ss_pred CCCCcccCCCCCCccccccccCCCCCCCccEEEECCCCCEEEEEE
Confidence 999999887765321 1111112233455554 477766544
No 31
>cd08980 GH43_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.28 E-value=1.3e-09 Score=116.17 Aligned_cols=192 Identities=17% Similarity=0.252 Sum_probs=126.0
Q ss_pred CceeeCeeeEEECCEEEEEEEeeec-cCCCceEEEEEEeC---CCCCceEeeeee-cCCCceeeeEEEEeCCEEEEEeC-
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNS-ITMQGDIGVAKSVD---KGATWQQLGIAL-DEDWHLSFPYVFDYHGQIYMMPE- 258 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~-~~~~G~I~va~S~D---~g~tw~~~gvvL-de~~HLSyP~VF~~dG~iYMiPE- 258 (802)
..++| |-+...+|++||||..... ......|.++++++ ....|++.+.++ +....-..|.||.++|+.||+=-
T Consensus 53 ~~~WA-P~i~~~~g~yylyys~~~~~~~~~~~~~v~~a~~~~~~~Gpw~~~~~~~~~~~~~~iDp~~~~ddG~~Yl~~~~ 131 (288)
T cd08980 53 GNLWA-PELHYIDGKWYIYFAAGDGGGNANHRMYVLENAGADPPTGPWTFKGRLADPTDRWAIDGTVFEHNGQLYFVWSG 131 (288)
T ss_pred ccEEC-ceEEEECCEEEEEEEccCCCCCcceeEEEEEeCCCCCCCCCceEeeEeccCCCCeeeeeEEEEECCEEEEEEEc
Confidence 46899 9999999999999987543 12345788888764 356899988654 33556789999999999999942
Q ss_pred --CCC--CCeeEEEEeccCCcCceeeeecc-C----------CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEE
Q 045656 259 --SRA--KGEVRLYRAVNFPLEWKLEKIIM-K----------KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYS 323 (802)
Q Consensus 259 --ss~--sg~l~LYra~~FP~~We~~~~Ll-~----------~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~A 323 (802)
... ...+.+-+..+ +..+.-+.+.+ . ...+.|.+++++|+||||||.. .+. ...+.+.++++
T Consensus 132 ~~~~~~~~~~i~~~~l~~-~~~~~g~~~~i~~p~~~we~~~~~~~EgP~~~k~~G~yYl~yS~~-~~~-~~~Y~v~~a~~ 208 (288)
T cd08980 132 WEGRTNGNQNLYIAKMSN-PWTLTGPRVLISRPEYDWERQGPGVNEGPAALKRNGKVFLTYSAS-GSW-TPDYCLGLLTA 208 (288)
T ss_pred cCCCCCCCccEEEEECCC-CCccCCcceEecCCCCCceecCceeeECcEEEEECCEEEEEEECC-CCC-CCCCEEEEEEE
Confidence 211 12333333222 22332122211 1 1379999999999999999974 221 24567778887
Q ss_pred cC---CCCC--CeeCCCCCeeeCCC--CCCcccCCccEEE-CCe-EEEEcccCC----CCCCceEEEEEec
Q 045656 324 SS---PFGP--WKPHKKNPIYNGDK--SLGARNGGRPFVY-DGN-LYRVGQDCA----ESYGRRVRTFKVE 381 (802)
Q Consensus 324 dS---plGP--W~~hp~NPI~~~~~--~~~aR~GG~vF~~-dGk-LyRp~QdC~----~~YG~~L~l~~It 381 (802)
++ |++| |++.+ +||+.... ......++.+|.. +|+ .|+..+... ...+|.+.+.+|.
T Consensus 209 ~~~~~~~~~~~~~~~~-~pil~~~~~~~~~g~GH~~iv~~~~G~~~~~~yH~~~~~~~~~~~R~~~i~~v~ 278 (288)
T cd08980 209 DGGADLLDPASWTKSP-TPVFQSSPENGVYGPGHNSFTKSPDGTEDWIVYHARPYPNGCGGNRHTRAQKVT 278 (288)
T ss_pred cCCCCCCChhhCcCCC-CCceecCCCCccCcCCccceEECCCCCEEEEEEccccCCCCCCCCceEEEEEEE
Confidence 64 4776 88765 79887542 2222344555654 787 898888653 2567888888875
No 32
>cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of
Probab=99.22 E-value=9.8e-10 Score=116.36 Aligned_cols=222 Identities=16% Similarity=0.138 Sum_probs=142.3
Q ss_pred eCeeeEEECCEEEEEEEeeeccCC-----CceEEEEEEeCCCCCceEeeeeecC-------CCceeeeEEEEeCCEEEEE
Q 045656 189 ADPFFYLQGNDLYLFYETKNSITM-----QGDIGVAKSVDKGATWQQLGIALDE-------DWHLSFPYVFDYHGQIYMM 256 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~~~-----~G~I~va~S~D~g~tw~~~gvvLde-------~~HLSyP~VF~~dG~iYMi 256 (802)
|||.+++.++++|+|.+....... ...|.+++|.| +.+|+..+.||+. ...++.|.|..++|++||+
T Consensus 1 ~DP~~~~~~~~yy~~~t~~~~~~~~~~~~~~~~~v~~S~D-l~~W~~~g~~l~~~~~~~~~~~~~wAP~i~~~~g~yy~y 79 (274)
T cd08990 1 ADPAAHVFNGRVYIYTSHDEAGGGGDDFCMNDYHVFSSPD-LVNWTDHGVILSVTDFPAWAKGQAWAPDVVEKNGKYYLY 79 (274)
T ss_pred CCCCcEEECCEEEEEeCCCCCCCCCCccccceEEEEECCC-CCCcEECcccccCCCCCccccCCcCcCeEEEECCEEEEE
Confidence 799999999999999987533211 12489999888 9999999988852 2458999999999999999
Q ss_pred eCCC---CCCeeEEEEeccCCc-Cceeeee--cc-----CCCccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEEEEc
Q 045656 257 PESR---AKGEVRLYRAVNFPL-EWKLEKI--IM-----KKPLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIWYSS 324 (802)
Q Consensus 257 PEss---~sg~l~LYra~~FP~-~We~~~~--Ll-----~~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~~Ad 324 (802)
--.. ....+-+..+.+ |. .|+.... ++ ....+||++|.. ||++||+++.. ..+.+..-+
T Consensus 80 y~~~~~~~~~~igva~s~~-p~Gpw~~~~~~~~~~~~~~~~~~iDp~vf~d~dG~~yl~~~~~--------~~~~~~~l~ 150 (274)
T cd08990 80 FPARDKDGGFAIGVAVSDS-PAGPFKDAGGPILITTPSGGWYSIDPAVFIDDDGQAYLYWGGG--------LGLRVAKLK 150 (274)
T ss_pred EEeecCCCceEEEEEEeCC-CCCCCCCCCCccccccCCCCCCccCCcEEECCCCCEEEEECCc--------CCEEEEEeC
Confidence 4332 234555666543 54 5876542 22 235899999998 69999999641 234433323
Q ss_pred CCCCCCeeCCCCCeee----CCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccC-CccceEEeccccCCCC
Q 045656 325 SPFGPWKPHKKNPIYN----GDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEIL-TKNEYKELEGRNAWNG 399 (802)
Q Consensus 325 SplGPW~~hp~NPI~~----~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~L-t~~~y~E~~~~~~w~~ 399 (802)
.-+..|+..+. .|.. .........|..+|+.+|++|++.=.+. ...+...+.+.+ .|++++...-. .-..
T Consensus 151 ~d~~~~~~~~~-~i~~~~~~~~~~~~~~EgP~i~k~~G~YYl~yS~~~---~~~~~~a~s~~p~GP~~~~g~~~~-~~~~ 225 (274)
T cd08990 151 PDMLSLKGEPV-EIVITDGAGDELRRFFEAPWVHKRNGTYYLSYSTGD---PEEIAYATSDSPLGPFTYRGVILD-PPVN 225 (274)
T ss_pred ccccccCCCcE-EEEeccccCCCCCCcccceeEEEECCEEEEEEECCC---CcEEEEEEcCCCCCCcccCcEEec-CCCC
Confidence 22445654321 2221 0111234678999999999999865543 345666555554 36554332211 1112
Q ss_pred CCccccccccCCCCCeEEEEeCcccCC
Q 045656 400 ARYHHLDAQQLSSGEWIAVMDGDRALS 426 (802)
Q Consensus 400 ~~~Hhld~~~l~~g~~i~vvDG~r~~~ 426 (802)
.+..|-++-+- +|+|+++..+.+...
T Consensus 226 ~g~gh~~~~~~-~g~~y~~yh~~~~~~ 251 (274)
T cd08990 226 GGTNHGSIVEF-KGQWYLFYHRATLSG 251 (274)
T ss_pred CCCCCCeEEEE-CCeEEEEEECCcCCC
Confidence 34556566654 478999999988654
No 33
>cd09003 GH43_AXH_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose
Probab=99.21 E-value=1.5e-09 Score=117.93 Aligned_cols=237 Identities=17% Similarity=0.214 Sum_probs=144.7
Q ss_pred CCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccC-----------CCceEEEEEEeCCCCCceEeeeeec-C
Q 045656 170 NPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSIT-----------MQGDIGVAKSVDKGATWQQLGIALD-E 237 (802)
Q Consensus 170 NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~-----------~~G~I~va~S~D~g~tw~~~gvvLd-e 237 (802)
||||. ..|.|||++++.++++|+|.+.-.... .-..|.+++|.| +.+|+..+.||+ .
T Consensus 1 NPi~~----------~~~~aDP~~~~~~g~yY~~~t~~~~~~~~~~~~~~~~~~~~~i~v~~S~D-L~~W~~~g~v~~~~ 69 (311)
T cd09003 1 NPIID----------HRYGADPTAVVYNGRVYVYTTNDDYEYDSNTIKDNNYYNINDITVISSDD-MVNWTDHGEIFVPN 69 (311)
T ss_pred CCccC----------CCccCCCCeEEECCEEEEEeCCCCccccccccccCCccccCcEEEEECCC-CCCcEEcccccCcC
Confidence 78876 358899999999999999998743211 012599999877 899999999986 2
Q ss_pred ---C--CceeeeEEEEeC----CEEEEEeCCCCCCeeEEEEeccCCc-Cceee--eeccCC---------CccCCEEEEE
Q 045656 238 ---D--WHLSFPYVFDYH----GQIYMMPESRAKGEVRLYRAVNFPL-EWKLE--KIIMKK---------PLVDPFMINH 296 (802)
Q Consensus 238 ---~--~HLSyP~VF~~d----G~iYMiPEss~sg~l~LYra~~FP~-~We~~--~~Ll~~---------~~vDatI~~~ 296 (802)
+ .++|+|.|++++ |++||+-... ...+-+..+.+ |. .|+.. +.|+.. ..+||++|..
T Consensus 70 ~~~~w~~~~WAP~v~~~~~~~~gkyylyy~~~-~~~igva~Sds-P~GP~~~~~g~~l~~~~~~~~~~~~~~iDp~~f~D 147 (311)
T cd09003 70 GIAKWAGNSWAPSIAVKKINGKGKFYLYFANG-GGGIGVLTADS-PVGPWTDPLGKPLITGSTPGCAGVVWLFDPAVFVD 147 (311)
T ss_pred CCCCcccccCCCceEEeccCCCCEEEEEEecC-CCeEEEEEcCC-CCCCcccCCCCeeecCCCCCccCCccccCCCeEEC
Confidence 2 368999999998 9999996432 33466666544 54 68754 223321 1589999998
Q ss_pred -CCEEEEEEeCCCCCC-CCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcc-c-C----C
Q 045656 297 -DGQYWLFGSDHSGFG-TTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQ-D-C----A 368 (802)
Q Consensus 297 -dG~wwLF~S~~~~~g-~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~Q-d-C----~ 368 (802)
||++||+++.....+ ......+.+..=+ .........++....+ ....|..+|+++|++|+..= . | .
T Consensus 148 dDG~~Yl~~g~~~~~~~~~~~~~i~i~~l~---~D~~~~~g~~~~i~~~--~~~Egp~~~K~~G~YYL~ys~~~~~~~~~ 222 (311)
T cd09003 148 DDGQGYLYFGGGVPGGRWANPNTARVIKLG---DDMISVDGSAVTIDAP--YFFEASGLHKINGTYYYSYCTNFGGRDPG 222 (311)
T ss_pred CCCCEEEEECCccCCCccccCCCEEEEEeC---CCceeccCCceEccCC--CceEeeeEEEECCEEEEEEeCCCCccCCC
Confidence 899999996421100 0111244444322 1122222233333221 35789999999999998542 2 2 0
Q ss_pred CCCCceEEEEEeccC-CccceEEec-c-ccCC-CCCCc-cccccccCCCCCeEEEEeCcccCC
Q 045656 369 ESYGRRVRTFKVEIL-TKNEYKELE-G-RNAW-NGARY-HHLDAQQLSSGEWIAVMDGDRALS 426 (802)
Q Consensus 369 ~~YG~~L~l~~It~L-t~~~y~E~~-~-~~~w-~~~~~-Hhld~~~l~~g~~i~vvDG~r~~~ 426 (802)
......|...+.+.+ -|++++... . .... .-.+. |+ ++-+. +|+|.+|+=+.+.+.
T Consensus 223 ~~~~y~v~y~~s~~~~GP~~~~g~il~~~~~~~~~~g~gH~-s~~~~-~g~~y~vyH~~~~~~ 283 (311)
T cd09003 223 KPPPGRIAYMTSKNPMGPFTYKGIILKNPGAFFGNGGNNHH-SIFEF-KGKWYIAYHARTLAK 283 (311)
T ss_pred CCCceeEEEEEcCCCCCCcccCCEeccCCccccCCccCCCc-cEEEe-CCeEEEEEeCCcCCc
Confidence 123445555555544 466553221 1 1101 11123 55 66654 678898987777653
No 34
>cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.19 E-value=1.8e-09 Score=115.17 Aligned_cols=230 Identities=17% Similarity=0.151 Sum_probs=137.0
Q ss_pred eCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCC------CceeeeEEEEeCCEEEEEeCCC--
Q 045656 189 ADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDED------WHLSFPYVFDYHGQIYMMPESR-- 260 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~------~HLSyP~VF~~dG~iYMiPEss-- 260 (802)
|||++++.++++|||++.... ...|.+++|.| +.+|+..+.++..+ ..++.|.|+..+|++||+--..
T Consensus 1 ~DP~v~~~~g~yyl~~t~~~~---~~~i~~~~S~D-l~~W~~~~~~~~~~~~~~~~~~~waP~v~~~~g~yyl~ys~~~~ 76 (294)
T cd08991 1 ADPFVLRYNGKYYAYGTGGAD---GRGFAVYSSPD-LVDWKLHGGALLALDDDWGRRGFWAPEVYYYNGKFYMYYSANDR 76 (294)
T ss_pred CCCeEEEECCEEEEEEeCCCC---CCeeEEEECCC-CCCceECCccccCCCCCccCCcEEccEEEEECCEEEEEEEeccC
Confidence 799999999999999987543 23589999877 88999999877543 3589999999999999994322
Q ss_pred --CCCeeEEEEeccCCc-Cceeee-eccC--CCccCCEEEEEC-CEEEEEEeCCCCCCCCCCCcEEEE-EEcCCC---CC
Q 045656 261 --AKGEVRLYRAVNFPL-EWKLEK-IIMK--KPLVDPFMINHD-GQYWLFGSDHSGFGTTQNGQLEIW-YSSSPF---GP 329 (802)
Q Consensus 261 --~sg~l~LYra~~FP~-~We~~~-~Ll~--~~~vDatI~~~d-G~wwLF~S~~~~~g~~~n~~L~i~-~AdSpl---GP 329 (802)
....+.+..+.+ |. .|+... .++. ...+|+++|..+ |++||+++.....+ ....+.+. .+.+.+ +.
T Consensus 77 ~~~~~~i~~a~s~~-p~gp~~~~~~~~~~~~~~~iD~~vf~d~dG~~yl~~~~~~~~~--~~~~i~~~~l~~d~~~~~~~ 153 (294)
T cd08991 77 DEKTEHIGVAVSDS-PLGPFRDIKKPPIDFEPKSIDAHPFIDDDGKPYLYYSRNNYGN--RVSDIYGTELVDDKLSIKTE 153 (294)
T ss_pred CCCcceEEEEEeCC-CCCCCCcCCCCcccCCCcccCCceEECCCCCEEEEEEecCCCC--cccceEEEEEccceeeeccc
Confidence 334555555433 43 465543 2332 358999999885 99999997531111 11223322 222221 11
Q ss_pred CeeCCCCCeee------------C-CCCCCcccCCccEEECCeEEEEccc-CCCCCCceEEEEEecc-CCccceEE-ec-
Q 045656 330 WKPHKKNPIYN------------G-DKSLGARNGGRPFVYDGNLYRVGQD-CAESYGRRVRTFKVEI-LTKNEYKE-LE- 392 (802)
Q Consensus 330 W~~hp~NPI~~------------~-~~~~~aR~GG~vF~~dGkLyRp~Qd-C~~~YG~~L~l~~It~-Lt~~~y~E-~~- 392 (802)
.+... .|+.. . ........|..+|+.+|++|++.-. +...-..++.+.+.+. +.+++... .+
T Consensus 154 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~k~~g~yyl~ys~~~~~~~~y~~~~a~s~~~~gp~~~~~~~pl 232 (294)
T cd08991 154 LVGPP-IPVSAPGIDEIFERWRFGEGKDWRTNEGPTVLKHNGRYYLTYSANHYENEDYGVGYATADSPLGPWTKYSNNPI 232 (294)
T ss_pred eeecc-ccccccccccccccccccccccCceeeCcEEEEECCEEEEEEECCCCCCCCceEEEEEcCCCCCCcEecCCCce
Confidence 11111 11110 0 0012246778889999999998753 2112223566666664 35654431 11
Q ss_pred --cccCCCCCCccccccccCCC-CCeEEEEeCcccCC
Q 045656 393 --GRNAWNGARYHHLDAQQLSS-GEWIAVMDGDRALS 426 (802)
Q Consensus 393 --~~~~w~~~~~Hhld~~~l~~-g~~i~vvDG~r~~~ 426 (802)
......-.+..|-++-+-++ ++|..|.=+...+.
T Consensus 233 ~~~~~~~~~~g~gh~~~~~~~~g~~~~~~yh~~~~~~ 269 (294)
T cd08991 233 LRRNGDKGVEGTGHNSVVKSPDGGELYIVYHAHNATD 269 (294)
T ss_pred EeeCCCCceEeCCCCceEECCCCCEEEEEEeeecCCC
Confidence 12222223456657777777 56777777765543
No 35
>cd08981 GH43_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.19 E-value=1.3e-09 Score=117.32 Aligned_cols=186 Identities=19% Similarity=0.209 Sum_probs=124.8
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEee--eeecCCCceeeeEEEEe-CCEEEEEeC---
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLG--IALDEDWHLSFPYVFDY-HGQIYMMPE--- 258 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~g--vvLde~~HLSyP~VF~~-dG~iYMiPE--- 258 (802)
..++| |.+...+|++||||..-+.......|+++++++-...|+..+ .+...++....|.+|.+ ||+.||+=.
T Consensus 66 ~~~WA-P~v~~~~G~yyly~s~~~~~~~~~~~~va~s~~p~GP~~~~~~~~~~~~~~~~iDp~~f~DdDG~~Yl~~~~~~ 144 (291)
T cd08981 66 DNFWA-PEVHEYKGRYYMFATFHNPGGERRGTAILVSDSPEGPFVPHSDGPVTPEDWMCLDGTLYVDEDGKPWMVFCHEW 144 (291)
T ss_pred ccccC-CeeeeeCCEEEEEEEeccCCCceeeEEEEECCCCCCCCEeCCCCccCCCCCceEcCceEEcCCCCEEEEEEecc
Confidence 35788 999999999999998754332334688999877666788764 34455667889999877 789999832
Q ss_pred -CCCCCeeEEEEeccCC---------------cCceeeee-cc---CC-CccCCEEEEE-CCEEEEEEeCCCCCCCCCCC
Q 045656 259 -SRAKGEVRLYRAVNFP---------------LEWKLEKI-IM---KK-PLVDPFMINH-DGQYWLFGSDHSGFGTTQNG 316 (802)
Q Consensus 259 -ss~sg~l~LYra~~FP---------------~~We~~~~-Ll---~~-~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~ 316 (802)
....+.|.+-+..+-- ..|+...- .. .. ..+.|.++++ +|+||||+|.. + ...+
T Consensus 145 ~~~~~~~i~~~eL~~d~~~~~ge~~~i~~~~~~~w~~~~~~~~~~~~~~~~EgP~i~k~~~G~YYl~yS~~---~-~~~Y 220 (291)
T cd08981 145 VQVYDGTIEAVRLSPDLSRAIGEPVLLFRASEAPWVREFGLIGRGSGGYVTDGPFLYRTKSGRLLMLWSSF---S-DGGY 220 (291)
T ss_pred cccCCCCEEEEEeCCCccccCCceEEEecCCcCCcccccccccccCCCeEeeCCEEEEeCCCcEEEEEEec---C-CCCE
Confidence 1223444444432100 11221110 00 11 2588999995 89999999852 2 3456
Q ss_pred cEEEEEEcC--CCCCCeeCCCCCeeeCCCCCCcccCCccEE-ECCeEEEEcccCCCCCCceEEEEEec
Q 045656 317 QLEIWYSSS--PFGPWKPHKKNPIYNGDKSLGARNGGRPFV-YDGNLYRVGQDCAESYGRRVRTFKVE 381 (802)
Q Consensus 317 ~L~i~~AdS--plGPW~~hp~NPI~~~~~~~~aR~GG~vF~-~dGkLyRp~QdC~~~YG~~L~l~~It 381 (802)
.+.+++|++ |+|||++.+ +||+... -.+|.+|. .+|+.|.+.-...+.-|+.+.+.+|.
T Consensus 221 ~~~~~rs~s~~~~GPy~~~~-~pi~~~~-----~GH~s~v~~~~G~~~~vyH~~~~~~~~~~~~~~~~ 282 (291)
T cd08981 221 AQGVARSESGTLLGPWVQEP-EPLISDD-----GGHGMLFRTFDGRLMLSLHTPNKHPDERPIFIEVD 282 (291)
T ss_pred EEEEEEcCCCCccCCcEECC-CcccCCC-----CCCCeeEEcCCCCEEEEEECCCCCCCeeeEEEEEe
Confidence 888999987 999999866 6876531 22366664 48998887766666777788888885
No 36
>cd08985 GH43_6 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.19 E-value=1.5e-09 Score=115.25 Aligned_cols=177 Identities=17% Similarity=0.208 Sum_probs=118.7
Q ss_pred CceeeCeeeEEE--CCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEe-CCEEEEEeCCCC
Q 045656 185 SNFVADPFFYLQ--GNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDY-HGQIYMMPESRA 261 (802)
Q Consensus 185 ~~F~ADPFll~~--~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~-dG~iYMiPEss~ 261 (802)
...+| |-++.. ++++||||...+.......|+||+|++-...|+..+..+........|.||.+ ||+.||+=.+..
T Consensus 63 ~~~wa-P~v~y~~~~g~Y~m~~~~~~~~~~~~~igvA~Sd~p~Gpf~~~~~~~~~~~~~~Dp~vf~DdDG~~Yl~~~~~~ 141 (265)
T cd08985 63 RIIER-PKVIYNAKTGKYVMWMHIDSSDYSDARVGVATSDTPTGPYTYLGSFRPLGYQSRDFGLFVDDDGTAYLLYSDRD 141 (265)
T ss_pred cEEEC-CeEEEeCCCCEEEEEEEeCCCCCcceeEEEEEeCCCCCCCEECCccCCCCCCccCCceEEcCCCCEEEEEecCC
Confidence 45677 888864 58999999986543456789999998766789987765544556789999987 579999976655
Q ss_pred CCeeEEEEeccCCcCceeeee-ccC-CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCee
Q 045656 262 KGEVRLYRAVNFPLEWKLEKI-IMK-KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIY 339 (802)
Q Consensus 262 sg~l~LYra~~FP~~We~~~~-Ll~-~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~ 339 (802)
...+.+.+..+--..+.-+.. +.. ...+.|.|++++|+||||+|... +. ......+++|++++|||+....-++.
T Consensus 142 ~~~i~i~~L~~d~~~~~~~~~~~~~~~~~EaP~i~K~~g~YYL~~S~~t--~~-~~~~~~y~~s~s~~GP~~~~~~~~~~ 218 (265)
T cd08985 142 NSDLYIYRLTDDYLSVTGEVTTVFVGAGREAPAIFKRNGKYYLLTSGLT--GW-NPNDARYATATSILGPWTDLGNPGPG 218 (265)
T ss_pred CCceEEEEeCCCcccccceEEEccCCCccccceEEEECCEEEEEEccCC--Cc-cCCceEEEEecCCCCCccccCcCCCC
Confidence 677888887542233332222 222 35899999999999999998732 21 22367899999999999975422221
Q ss_pred eCCCCCCcccCCccEEECC---eEEEEcccC
Q 045656 340 NGDKSLGARNGGRPFVYDG---NLYRVGQDC 367 (802)
Q Consensus 340 ~~~~~~~aR~GG~vF~~dG---kLyRp~QdC 367 (802)
.+ ....+ -.+-++...| +.|+..-|.
T Consensus 219 ~~-~t~~s-q~~~v~~~~g~~~~~~~~~~dr 247 (265)
T cd08985 219 GS-TTYGS-QTTFVLPVPGSKQTTYIYMGDR 247 (265)
T ss_pred CC-cEECC-CcceEEEeCCCCCCEEEEEEcc
Confidence 11 11111 1233344454 666666654
No 37
>cd08980 GH43_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.18 E-value=4.5e-09 Score=112.08 Aligned_cols=222 Identities=17% Similarity=0.197 Sum_probs=134.1
Q ss_pred eCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeee--ecC------CCceeeeEEEEeCCEEEEEeCCC
Q 045656 189 ADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIA--LDE------DWHLSFPYVFDYHGQIYMMPESR 260 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvv--Lde------~~HLSyP~VF~~dG~iYMiPEss 260 (802)
|||++++.++++|++++... ..|.+++|.| +.+|+..+.+ ++. ..++|+|.|+.++|++||+--..
T Consensus 1 ~DP~v~~~~d~yY~~~T~~~-----~~~~i~~S~d-l~~w~~~~~~~~~~~~~~~~~~~~~WAP~i~~~~g~yylyys~~ 74 (288)
T cd08980 1 ADPWVIRHDGYYYFTATTGE-----DRIELRRSDT-LAGLATAESKVVWTPPDSGPYSGNLWAPELHYIDGKWYIYFAAG 74 (288)
T ss_pred CCCeEEEECCEEEEEEEeCC-----CcEEEEecCC-hhHhhcCCcEEEecCCCCCCccccEECceEEEECCEEEEEEEcc
Confidence 79999999999999998742 5699999877 8899876532 222 13699999999999999994322
Q ss_pred -----CCCeeEEEEecc--CC-cCceeeeecc---CCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCC
Q 045656 261 -----AKGEVRLYRAVN--FP-LEWKLEKIIM---KKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGP 329 (802)
Q Consensus 261 -----~sg~l~LYra~~--FP-~~We~~~~Ll---~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGP 329 (802)
...++.+..+.+ -| ..|+....+. +...+||++++.+|++||+++.... +......+.+..-++ +
T Consensus 75 ~~~~~~~~~~~v~~a~~~~~~~Gpw~~~~~~~~~~~~~~iDp~~~~ddG~~Yl~~~~~~~-~~~~~~~i~~~~l~~---~ 150 (288)
T cd08980 75 DGGGNANHRMYVLENAGADPPTGPWTFKGRLADPTDRWAIDGTVFEHNGQLYFVWSGWEG-RTNGNQNLYIAKMSN---P 150 (288)
T ss_pred CCCCCcceeEEEEEeCCCCCCCCCceEeeEeccCCCCeeeeeEEEEECCEEEEEEEccCC-CCCCCccEEEEECCC---C
Confidence 223444455543 13 4698765443 2358999999999999999975321 111122344333222 2
Q ss_pred CeeCCCCCeeeCCCC-------CCcccCCccEEECCeEEEEccc--C-CCCCCceEEEEEecc----CCccceEEec---
Q 045656 330 WKPHKKNPIYNGDKS-------LGARNGGRPFVYDGNLYRVGQD--C-AESYGRRVRTFKVEI----LTKNEYKELE--- 392 (802)
Q Consensus 330 W~~hp~NPI~~~~~~-------~~aR~GG~vF~~dGkLyRp~Qd--C-~~~YG~~L~l~~It~----Lt~~~y~E~~--- 392 (802)
++.. ..|++...+. .....|..+|+.+|++|+..=. | ...| .+.+.+++. +.+..++...
T Consensus 151 ~~~~-g~~~~i~~p~~~we~~~~~~~EgP~~~k~~G~yYl~yS~~~~~~~~Y--~v~~a~~~~~~~~~~~~~~~~~~~pi 227 (288)
T cd08980 151 WTLT-GPRVLISRPEYDWERQGPGVNEGPAALKRNGKVFLTYSASGSWTPDY--CLGLLTADGGADLLDPASWTKSPTPV 227 (288)
T ss_pred CccC-CcceEecCCCCCceecCceeeECcEEEEECCEEEEEEECCCCCCCCC--EEEEEEEcCCCCCCChhhCcCCCCCc
Confidence 3221 1222221110 0235788889999999986532 2 3444 555555542 3343333211
Q ss_pred --cc--cCCCCCCccccccccCCCCC-eEEEEeCcccC
Q 045656 393 --GR--NAWNGARYHHLDAQQLSSGE-WIAVMDGDRAL 425 (802)
Q Consensus 393 --~~--~~w~~~~~Hhld~~~l~~g~-~i~vvDG~r~~ 425 (802)
.. ..+. +..|-++-+-++|+ |.+|+=+.+.+
T Consensus 228 l~~~~~~~~~--g~GH~~iv~~~~G~~~~~~yH~~~~~ 263 (288)
T cd08980 228 FQSSPENGVY--GPGHNSFTKSPDGTEDWIVYHARPYP 263 (288)
T ss_pred eecCCCCccC--cCCccceEECCCCCEEEEEEccccCC
Confidence 11 1333 34565777767887 88887666543
No 38
>cd08986 GH43_7 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.16 E-value=1.9e-09 Score=114.63 Aligned_cols=214 Identities=17% Similarity=0.170 Sum_probs=135.7
Q ss_pred eeCeeeEEE-CCEEEEEEEeeecc-------CCCceEEEEEEeCCCCCceEeeeeecCC-----------------Ccee
Q 045656 188 VADPFFYLQ-GNDLYLFYETKNSI-------TMQGDIGVAKSVDKGATWQQLGIALDED-----------------WHLS 242 (802)
Q Consensus 188 ~ADPFll~~-~g~~ylF~E~~~~~-------~~~G~I~va~S~D~g~tw~~~gvvLde~-----------------~HLS 242 (802)
+.||++++. ++.|||+.|..... .....|.+++|.| +.+|+..+.|++.. ..+|
T Consensus 2 ~rDP~v~~~~dg~Yy~~~T~~~~~~~~~~~~~~~~gi~i~~S~D-Lv~W~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~W 80 (269)
T cd08986 2 IRDTYVTLGPDGYYYLTGTTPPPGLPFEDCSIVNDGIPLWRSKD-LKKWESLGLIWDREKDATWQSYWIDEDDWYKNAVW 80 (269)
T ss_pred CcCCeEEecCCCcEEEEEccCCccccccccccCCCceEEEeCcc-ccCccccCcccccCCcccccccccccCCcccCCcC
Confidence 689999977 56999999976432 1235799999988 99999999887532 2589
Q ss_pred eeEEEEeCCEEEEEeCCC--C--CCeeEEEEeccCCc-Cceeeeec-cCCCccCCEEEEE-CCEEEEEEeCCCCCCCCCC
Q 045656 243 FPYVFDYHGQIYMMPESR--A--KGEVRLYRAVNFPL-EWKLEKII-MKKPLVDPFMINH-DGQYWLFGSDHSGFGTTQN 315 (802)
Q Consensus 243 yP~VF~~dG~iYMiPEss--~--sg~l~LYra~~FP~-~We~~~~L-l~~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n 315 (802)
+|.|+.++|++||+--.. . ...+-+..+ +-|. .|+..... .....+|+++|.. ||++||++.... -.
T Consensus 81 AP~v~~~~g~yyl~~s~~~~~~~~~~i~va~a-~~p~Gp~~~~~~~~~~~~~iD~~~f~D~DG~~Yl~~~~~~--i~--- 154 (269)
T cd08986 81 APELHYIKGRWYLVACMNNPGYGGSSILLSTS-GKIEGPYKHITGNKPLFPGIDPSLFEDDDGKVYLVWHNTL--IA--- 154 (269)
T ss_pred CceEEEECCEEEEEEEccCCCCCceEEEEEeC-CCCCCCcEeccCCCCCCCccCCceEEcCCCCEEEEeeCCc--eE---
Confidence 999999999999994221 1 122333333 3343 57653221 1124799999998 699999985420 00
Q ss_pred CcEEEEEEcCCCCCCeeCCCCCeeeCCC-----CCCcccCCccEEECCeEEEEc--ccC--CCCCCceEEEEEeccCC-c
Q 045656 316 GQLEIWYSSSPFGPWKPHKKNPIYNGDK-----SLGARNGGRPFVYDGNLYRVG--QDC--AESYGRRVRTFKVEILT-K 385 (802)
Q Consensus 316 ~~L~i~~AdSplGPW~~hp~NPI~~~~~-----~~~aR~GG~vF~~dGkLyRp~--QdC--~~~YG~~L~l~~It~Lt-~ 385 (802)
+| +++.+ ... ..|+..... ......|..+|+.+|++|++. ..| ....+..+.+.+.+.++ |
T Consensus 155 -~l----~~d~~-~~~---~~~~~~~~~~~~~~~~~~~EgP~i~k~~G~YYL~yS~~~~~~~~~~~y~v~va~S~s~~GP 225 (269)
T cd08986 155 -RL----KDDLS-GLA---GDPVRIDPSPTFYKDEIGHEGAFVFKYGGKYYLFGTAWSTDKGRKGSYDLYYAVADKITGP 225 (269)
T ss_pred -ec----cCccc-ccc---CCcEEEecccccccCCccccccEEEEECCEEEEEEeecCCCCCCCCceEEEEEEcCCCCCC
Confidence 01 11111 111 112111100 112578899999999999985 333 12456678888888775 5
Q ss_pred cceEEeccccCCCCCCccccccccCCCCCeEEEEeCcc
Q 045656 386 NEYKELEGRNAWNGARYHHLDAQQLSSGEWIAVMDGDR 423 (802)
Q Consensus 386 ~~y~E~~~~~~w~~~~~Hhld~~~l~~g~~i~vvDG~r 423 (802)
.+.++. .+ .+.+|-++-+.++|+|.+++=+..
T Consensus 226 y~~~~~----~~--~g~Gh~~~v~~~~G~~~~~~h~~~ 257 (269)
T cd08986 226 YGARYF----AG--RFLGHNTPFQDLDGRWWCTAFFNP 257 (269)
T ss_pred ccccCc----cc--cccCCCceEECCCCCEEEEEEcCC
Confidence 443322 12 345566888888999999988776
No 39
>cd08981 GH43_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.16 E-value=3.2e-09 Score=114.42 Aligned_cols=226 Identities=15% Similarity=0.158 Sum_probs=135.9
Q ss_pred ceeeCeeeEEE--CCEEEEEEEeeecc--CCCceEEEEEEeCCCCCceEeeeeecCC------CceeeeEEEEeCCEEEE
Q 045656 186 NFVADPFFYLQ--GNDLYLFYETKNSI--TMQGDIGVAKSVDKGATWQQLGIALDED------WHLSFPYVFDYHGQIYM 255 (802)
Q Consensus 186 ~F~ADPFll~~--~g~~ylF~E~~~~~--~~~G~I~va~S~D~g~tw~~~gvvLde~------~HLSyP~VF~~dG~iYM 255 (802)
..++||+++.. +++||+|.+..... .....|.+.+|+| +.+|+..+.|++.+ ..+|+|.|++++|++||
T Consensus 4 ~~~~DP~v~~~~~~g~yYl~~T~~~~~~~~~~~gi~v~~S~D-Lv~W~~~g~~~~~~~~~~~~~~~WAP~v~~~~G~yyl 82 (291)
T cd08981 4 IRIRDPFILADPETGTYYLYGTTDPNIWGGEGTGFDVYKSKD-LKDWEGPYPVFRPPDDFWADDNFWAPEVHEYKGRYYM 82 (291)
T ss_pred ccccCCEEEEECCCCEEEEEEecCccccccCCCcEEEEECCC-hhcccccceeeccCCCcCccccccCCeeeeeCCEEEE
Confidence 36799999987 99999999985321 1123589999987 89999999888532 35899999999999999
Q ss_pred EeCCC----CCCeeEEEEeccCCc-Cceeee--eccC--CCccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEEEEcC
Q 045656 256 MPESR----AKGEVRLYRAVNFPL-EWKLEK--IIMK--KPLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIWYSSS 325 (802)
Q Consensus 256 iPEss----~sg~l~LYra~~FP~-~We~~~--~Ll~--~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~~AdS 325 (802)
+-..+ ....+.+..+.+ |. .|+... .+.. ...+||++|.. ||++||++... .....+..+.+..
T Consensus 83 y~s~~~~~~~~~~~~va~s~~-p~GP~~~~~~~~~~~~~~~~iDp~~f~DdDG~~Yl~~~~~--~~~~~~~~i~~~e--- 156 (291)
T cd08981 83 FATFHNPGGERRGTAILVSDS-PEGPFVPHSDGPVTPEDWMCLDGTLYVDEDGKPWMVFCHE--WVQVYDGTIEAVR--- 156 (291)
T ss_pred EEEeccCCCceeeEEEEECCC-CCCCCEeCCCCccCCCCCceEcCceEEcCCCCEEEEEEec--ccccCCCCEEEEE---
Confidence 94222 123455666543 55 477542 2223 25899999988 79999988531 0111123444333
Q ss_pred CCCCCeeCCCCCe--eeCC--------------CCCCcccCCccEEE-CCeEEEEcccCCCCCCceEEEEEecc--C-Cc
Q 045656 326 PFGPWKPHKKNPI--YNGD--------------KSLGARNGGRPFVY-DGNLYRVGQDCAESYGRRVRTFKVEI--L-TK 385 (802)
Q Consensus 326 plGPW~~hp~NPI--~~~~--------------~~~~aR~GG~vF~~-dGkLyRp~QdC~~~YG~~L~l~~It~--L-t~ 385 (802)
+..+++.-...|+ +... ......+|..+|+. +|++|+..=-+. .-+..+.+.+.+. + .|
T Consensus 157 L~~d~~~~~ge~~~i~~~~~~~w~~~~~~~~~~~~~~~~EgP~i~k~~~G~YYl~yS~~~-~~~Y~~~~~rs~s~~~~GP 235 (291)
T cd08981 157 LSPDLSRAIGEPVLLFRASEAPWVREFGLIGRGSGGYVTDGPFLYRTKSGRLLMLWSSFS-DGGYAQGVARSESGTLLGP 235 (291)
T ss_pred eCCCccccCCceEEEecCCcCCcccccccccccCCCeEeeCCEEEEeCCCcEEEEEEecC-CCCEEEEEEEcCCCCccCC
Confidence 1122221111121 1100 00113466677774 788887542221 3345667777664 3 45
Q ss_pred cceEEeccccCCCCCCccccccccCCCCCeEEEEeCcc
Q 045656 386 NEYKELEGRNAWNGARYHHLDAQQLSSGEWIAVMDGDR 423 (802)
Q Consensus 386 ~~y~E~~~~~~w~~~~~Hhld~~~l~~g~~i~vvDG~r 423 (802)
|++... + ....+..|-++-+-++|+|.+|+=+..
T Consensus 236 --y~~~~~-p-i~~~~~GH~s~v~~~~G~~~~vyH~~~ 269 (291)
T cd08981 236 --WVQEPE-P-LISDDGGHGMLFRTFDGRLMLSLHTPN 269 (291)
T ss_pred --cEECCC-c-ccCCCCCCCeeEEcCCCCEEEEEECCC
Confidence 433321 1 123356676877778888888886663
No 40
>cd08986 GH43_7 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.15 E-value=2.4e-09 Score=113.90 Aligned_cols=166 Identities=17% Similarity=0.155 Sum_probs=108.3
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEe-CCEEEEEeCCCCCC
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDY-HGQIYMMPESRAKG 263 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~-dG~iYMiPEss~sg 263 (802)
..++| |.+...+|++||||...+.......|.++++++....|+..... +.......|.||.+ ||+.||+-.+..
T Consensus 77 ~~~WA-P~v~~~~g~yyl~~s~~~~~~~~~~i~va~a~~p~Gp~~~~~~~-~~~~~~iD~~~f~D~DG~~Yl~~~~~~-- 152 (269)
T cd08986 77 NAVWA-PELHYIKGRWYLVACMNNPGYGGSSILLSTSGKIEGPYKHITGN-KPLFPGIDPSLFEDDDGKVYLVWHNTL-- 152 (269)
T ss_pred CCcCC-ceEEEECCEEEEEEEccCCCCCceEEEEEeCCCCCCCcEeccCC-CCCCCccCCceEEcCCCCEEEEeeCCc--
Confidence 35788 99999999999999875443345679999877655678865321 12245788999877 589999964321
Q ss_pred eeEEEEeccCCcCceeeee-cc-------C-CCccCCEEEEECCEEEEEEeCCCCC-CCCCCCcEEEEEEcCCCCCCeeC
Q 045656 264 EVRLYRAVNFPLEWKLEKI-IM-------K-KPLVDPFMINHDGQYWLFGSDHSGF-GTTQNGQLEIWYSSSPFGPWKPH 333 (802)
Q Consensus 264 ~l~LYra~~FP~~We~~~~-Ll-------~-~~~vDatI~~~dG~wwLF~S~~~~~-g~~~n~~L~i~~AdSplGPW~~h 333 (802)
+.+..+-.....-+.+ +. + ...++|.|++++|+||||+|..... +...++.+.+++|++++|||++.
T Consensus 153 ---i~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~EgP~i~k~~G~YYL~yS~~~~~~~~~~~y~v~va~S~s~~GPy~~~ 229 (269)
T cd08986 153 ---IARLKDDLSGLAGDPVRIDPSPTFYKDEIGHEGAFVFKYGGKYYLFGTAWSTDKGRKGSYDLYYAVADKITGPYGAR 229 (269)
T ss_pred ---eEeccCccccccCCcEEEecccccccCCccccccEEEEECCEEEEEEeecCCCCCCCCceEEEEEEcCCCCCCcccc
Confidence 1121111011111111 11 1 2379999999999999999864221 22345578899999999999986
Q ss_pred CCCCeeeCCCCCCcccCCccEEE-CCeEEEEcc
Q 045656 334 KKNPIYNGDKSLGARNGGRPFVY-DGNLYRVGQ 365 (802)
Q Consensus 334 p~NPI~~~~~~~~aR~GG~vF~~-dGkLyRp~Q 365 (802)
+ +|+. .-.++.+|.. ||++|....
T Consensus 230 ~-~~~~-------g~Gh~~~v~~~~G~~~~~~h 254 (269)
T cd08986 230 Y-FAGR-------FLGHNTPFQDLDGRWWCTAF 254 (269)
T ss_pred C-cccc-------ccCCCceEECCCCCEEEEEE
Confidence 5 3421 1234567765 899987654
No 41
>cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase. Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n
Probab=99.12 E-value=4.3e-09 Score=116.33 Aligned_cols=157 Identities=23% Similarity=0.345 Sum_probs=104.5
Q ss_pred ceeeCeeeE-EECCEEEEEEEeeecc-----CCCceEEEEEEeCCC---CCceEeeeeecC-------------------
Q 045656 186 NFVADPFFY-LQGNDLYLFYETKNSI-----TMQGDIGVAKSVDKG---ATWQQLGIALDE------------------- 237 (802)
Q Consensus 186 ~F~ADPFll-~~~g~~ylF~E~~~~~-----~~~G~I~va~S~D~g---~tw~~~gvvLde------------------- 237 (802)
..|+ +-.+ ..+++++|||+..... ...-+|+++++.+.. ..|+....+++.
T Consensus 70 g~wS-Gsa~~~~dg~~~lfYTg~~~~~~~~~~~~Q~ia~a~~~~~~v~~~~~~~~~~lf~~Dg~~Yqt~~q~~~~~~~~~ 148 (349)
T cd08997 70 REWS-GSATLDDDGTVQLFYTAVGRKGEPQPTFTQRLALARGTLSVVNLSGFEDHHELFEPDGDLYQTDQQYEGTGAQGD 148 (349)
T ss_pred CeEc-ceEEEeCCCeEEEEEeccccCCCCCCCceEEEEEEECCCcceEecccCccceeeeCCCceEEeccccccccccCc
Confidence 3445 4444 3459999999986321 222357777655410 122222222211
Q ss_pred CCceeeeEEEEeC--CEEEEEeCCCCC------------------------------CeeEEEEecc-CCcCceeeeecc
Q 045656 238 DWHLSFPYVFDYH--GQIYMMPESRAK------------------------------GEVRLYRAVN-FPLEWKLEKIIM 284 (802)
Q Consensus 238 ~~HLSyP~VF~~d--G~iYMiPEss~s------------------------------g~l~LYra~~-FP~~We~~~~Ll 284 (802)
.+++=.|+||+++ |++||+-|+... +.|-|.++.+ ...+||..+.|+
T Consensus 149 ~~~fRDP~vf~d~~~G~~ymvfeant~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~G~IGia~~~s~dl~~W~~~~PL~ 228 (349)
T cd08997 149 IKAFRDPFVFEDPETGKTYLLFEGNTAGERGSQECTEAELGRVLPDTVKPDGASYQNGNVGIAVAKNDDLTEWKLLPPLL 228 (349)
T ss_pred cCcccCCEEEecCCCCcEEEEEEeccCCCCCccccccccccccccccccccccccccceEEEEEecCCCCCCcEEcCccc
Confidence 4667889999998 999999775333 4455666542 236799888776
Q ss_pred CC-----CccCCEEEEECCEEEEEEeCCCC-CC--CCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCC
Q 045656 285 KK-----PLVDPFMINHDGQYWLFGSDHSG-FG--TTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDK 343 (802)
Q Consensus 285 ~~-----~~vDatI~~~dG~wwLF~S~~~~-~g--~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~ 343 (802)
+. ..++|.+|+++|+||||+|.... +. ...+..+..|+|++++|||++++.++++.+.+
T Consensus 229 ~a~~v~d~~E~P~v~~~~gk~yL~~s~~~~~~~~~~~~~~~~~g~vsdsl~GP~~~~n~sglvl~~p 295 (349)
T cd08997 229 EANGVNDELERPHVVFHNGKYYLFTISHRSTFAPGLSGPDGLYGFVSDSLRGPYKPLNGSGLVLGNP 295 (349)
T ss_pred cCCCcCCceEcceEEEECCEEEEEEeCCcCccccccCCCCcEEEEEeCCCCCCCccCCCCcceeCCC
Confidence 42 48999999999999999985321 11 11233577889999999999999999988753
No 42
>cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins. This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f
Probab=99.11 E-value=8.7e-09 Score=109.85 Aligned_cols=179 Identities=17% Similarity=0.222 Sum_probs=116.4
Q ss_pred EEEEEecCCCCccCccccccccCCCCCCCCCCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeec------cC
Q 045656 138 SIGVFFGNSPFSLKPIETANVWRDDSAAWPVANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNS------IT 211 (802)
Q Consensus 138 sig~~~g~~p~~l~p~~~~~~~~~~~~~w~~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~------~~ 211 (802)
.||++..++|.. | |-..++||....-.. ....-.-+|.++..+|++||||+.... ..
T Consensus 47 ~i~~A~S~~~~g--~-------------w~~~g~vl~~~~~~~--wd~~~~~~P~vi~~~g~yyl~Y~~~~~~~~~~~~~ 109 (291)
T cd08994 47 EIVHAVSDTPEG--P-------------YTFQEVVLPGRGGGY--WDARTTHNPTIKRFDGKYYLYYIGNTDPGPRPGHR 109 (291)
T ss_pred eEEEEEcCCCCC--C-------------cEEeeeEcCCCCCCc--ccCCCccCCeEEEECCEEEEEEEcccCCcccccCC
Confidence 389998888642 1 223455654221100 011234579999999999999997643 23
Q ss_pred CCceEEEEEEeCCCCCceE-eeeeecC------CCceeeeEEEEe-CCEEEEEeCCC------CCCeeEEEEeccCCcCc
Q 045656 212 MQGDIGVAKSVDKGATWQQ-LGIALDE------DWHLSFPYVFDY-HGQIYMMPESR------AKGEVRLYRAVNFPLEW 277 (802)
Q Consensus 212 ~~G~I~va~S~D~g~tw~~-~gvvLde------~~HLSyP~VF~~-dG~iYMiPEss------~sg~l~LYra~~FP~~W 277 (802)
.+..|+++.|.+....|+. .++||.. ..+.+.|.|+.. +|++||+-... ....+.|..+.+.-..|
T Consensus 110 ~~~~ig~a~s~~~~g~w~~~~~pvl~~~~~~~~~~~~~~p~v~~~~~g~~~m~y~g~~~~~~~~~~~~gla~s~d~~g~~ 189 (291)
T cd08994 110 NNQRIGVAVSDSLDGPWKRSDQPILEPRPGGWDNLITSNPAVTRRPDGSYLLVYKGGTYNPTKGNRKYGVAIADSPTGPY 189 (291)
T ss_pred CCceEEEEEeCCCCCCcEECCCceecCCCCccccccccCCCeEEeCCCCEEEEEeccccCCCCCcEEEEEEEeCCCCCCC
Confidence 4678999998764568988 5677743 256899999998 89999996433 23455666665543568
Q ss_pred eeee-ecc-----CCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCC
Q 045656 278 KLEK-IIM-----KKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHK 334 (802)
Q Consensus 278 e~~~-~Ll-----~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp 334 (802)
+... ..+ ...++||.|++.+|+|||+++..........+.+.+|.|++.. .|+.++
T Consensus 190 ~~~~~~~v~~~~~~~~~~dP~V~~~~g~yym~~~~~~~~~~~~~~~i~~a~S~Dg~-~W~~~~ 251 (291)
T cd08994 190 TKVSGPPFIEPGDNGNTEDPFVWYDKGQFHMIVKDMLGYVTGEKGGGAYFRSKDGI-HWKLAP 251 (291)
T ss_pred EECCCCccccCCCCCceeCceEEEeCCEEEEEEeecccCcCCCCceEEEEECCCCC-CceecC
Confidence 7754 222 2358999999999999999987422111123355555555433 898874
No 43
>cd08988 GH43_ABN Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla
Probab=99.09 E-value=9.4e-09 Score=109.76 Aligned_cols=218 Identities=20% Similarity=0.304 Sum_probs=129.8
Q ss_pred eCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC------------CCceeeeEEEEeCCEEEEE
Q 045656 189 ADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE------------DWHLSFPYVFDYHGQIYMM 256 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde------------~~HLSyP~VF~~dG~iYMi 256 (802)
|||++++.+++||||.+.. .|.+++|.| +.+|+..+.+|+. ...+|+|.|..++|++||+
T Consensus 1 ~DP~vi~~~~~YY~~~T~~-------g~~v~~S~D-L~~W~~~g~~~~~~~~~~~~~~~~~~~~~WAP~v~~~~G~yyly 72 (279)
T cd08988 1 HDPVIIKEGDTWYVFGTGP-------GITILSSKD-LVNWTYSGSAFATEPTWKKRVPPSFDGHLWAPDIYQHNGKFYLY 72 (279)
T ss_pred CCCEEEEECCEEEEEEecC-------CEEEEECCC-cCCccccCccccCCCccccccCCCCCCCEecceEEEECCEEEEE
Confidence 7999999999999999862 588999987 8999999988852 1369999999999999998
Q ss_pred eCC--C--CCCeeEEEEeccC--Cc---CceeeeeccC------CCccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEE
Q 045656 257 PES--R--AKGEVRLYRAVNF--PL---EWKLEKIIMK------KPLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEI 320 (802)
Q Consensus 257 PEs--s--~sg~l~LYra~~F--P~---~We~~~~Ll~------~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i 320 (802)
--. . ....+-+..+.+. |+ .|+....++. ...+||++|.. ||++||++... ...+.+
T Consensus 73 ys~~~~~~~~~~igva~s~~p~Gp~~~~~w~~~~~i~~~~~~~~~~~iDp~~f~DdDG~~Yl~~g~~-------~~gi~~ 145 (279)
T cd08988 73 YSVSAFGSNTSAIGLAVNKTIDGPSPDYGWEKGGVVISSDASDNYNAIDPAIIFDQHGQPWLSFGSF-------WGGIKL 145 (279)
T ss_pred EEeccCCCCCceEEEEEcCCCCCCCcCcCccccCceEecCCCCCCCccCCceEEcCCCCEEEEeccc-------CCCEEE
Confidence 422 2 2234444444331 21 2653233332 24799999988 59999998541 123333
Q ss_pred EE-EcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEc--ccCC--CCCCceEEEEEeccCC-ccceEEec--
Q 045656 321 WY-SSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVG--QDCA--ESYGRRVRTFKVEILT-KNEYKELE-- 392 (802)
Q Consensus 321 ~~-AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~--QdC~--~~YG~~L~l~~It~Lt-~~~y~E~~-- 392 (802)
.. .++.+.+=.+-....|...........|..+|+.+|++|++. ..|. ...+..+.+.+.+.+. |++.++..
T Consensus 146 ~eL~~d~~~~~~~~~~~~i~~~~~~~~~~Egp~i~k~~g~YYl~~S~g~~~~~~~~~y~v~~arS~~~~GPy~~~~~~p~ 225 (279)
T cd08988 146 FELDKDTMKPAEPGELHSIAGRERSSAAIEAPFILYRGDYYYLFVSFGLCCRGGDSTYKIAVGRSKNITGPYLDKTGRSM 225 (279)
T ss_pred EEECcccCCccCCCcceEEeccCCCCCceEeeEEEEcCCeEEEEEEcCcccCCCCCCeEEEEEEeCCCCCCCCCCCCCCc
Confidence 22 111111100000111222211123568899999999999965 2242 2345578888888774 54443322
Q ss_pred -c---------ccCCCCCCccccccccCCCCCeEEEEeCccc
Q 045656 393 -G---------RNAWNGARYHHLDAQQLSSGEWIAVMDGDRA 424 (802)
Q Consensus 393 -~---------~~~w~~~~~Hhld~~~l~~g~~i~vvDG~r~ 424 (802)
. ...|.+.+ |+ ++-+= .++|.+|.=+...
T Consensus 226 ~~~~~~~~~~~~~~~~g~G-H~-~v~~~-~g~~~~~yH~~~~ 264 (279)
T cd08988 226 LQGGGTILDKGNDRWVGPG-HN-SAYTD-DGKDYLVLHAYDA 264 (279)
T ss_pred ccCCceEEEcCCCcEEcCC-CC-EEEeC-CCCEEEEEEEeeC
Confidence 1 11122222 33 55443 3677777766554
No 44
>cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function. This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.09 E-value=7.6e-09 Score=109.39 Aligned_cols=184 Identities=16% Similarity=0.278 Sum_probs=120.8
Q ss_pred CeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEee--eeec--C----CCceeeeEEEEeCCEEEEEeCCC-
Q 045656 190 DPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLG--IALD--E----DWHLSFPYVFDYHGQIYMMPESR- 260 (802)
Q Consensus 190 DPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~g--vvLd--e----~~HLSyP~VF~~dG~iYMiPEss- 260 (802)
||.++.++|++||||+.... ..+-.|++|+|.| +.+|+..+ +++. + ..++..|.|++.+|++||+--+.
T Consensus 2 nP~v~~~~G~y~l~y~~~~~-~~~~~ig~A~S~D-g~~~~~~~~~~i~p~~~~~~~~~gv~dP~v~~~~g~y~m~Yta~~ 79 (268)
T cd08993 2 NPAVVYDNGEFYLLYRAAGN-DGVIRLGLARSRD-GLHFEIDPDPPVWPPPEDGFEEGGVEDPRIVKIDDTYYITYAARP 79 (268)
T ss_pred cCeEEEECCEEEEEEEEECC-CCceEEEEEEECC-CceEEECCcceEcCCCCCcccccCccCcEEEEECCEEEEEEEccC
Confidence 79999999999999987543 2467899999988 88998765 3334 1 36789999999999999996432
Q ss_pred ---CCCeeEEEEeccCCcCceeeeeccCCCccCCEEEE--ECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCC
Q 045656 261 ---AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMIN--HDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKK 335 (802)
Q Consensus 261 ---~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~--~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~ 335 (802)
...++.+++..++ .+|+.+...+.....|++++. .+|+|||+++... .+......+.+++|+++. .|+.|.
T Consensus 80 ~~~~~~~i~lA~S~D~-~~W~~~~~~~~~~~~d~~~~p~~~~g~y~m~~r~~~-~~~~~~~~I~lA~S~Dl~-~W~~~~- 155 (268)
T cd08993 80 NAPNGTRIGLATTKDF-ITFERLGTSLVPNNRDGILFPEKINGKYVMLHRPFE-YGGTSPPDMWLSFSPDLV-HWGNHR- 155 (268)
T ss_pred CCCCCcEEEEEEeCCc-ceEEEecccCCCCCCCEEEeeEEECCEEEEEEcccc-CCCCCCCcEEEEECCCcC-ccCCCe-
Confidence 3467888888775 789887654443356888885 5999999996431 111123466666666654 798664
Q ss_pred CCeeeCCC----CCCcccCCccEEE-CCeEEEEcccC----CCCCCceEEEEEec
Q 045656 336 NPIYNGDK----SLGARNGGRPFVY-DGNLYRVGQDC----AESYGRRVRTFKVE 381 (802)
Q Consensus 336 NPI~~~~~----~~~aR~GG~vF~~-dGkLyRp~QdC----~~~YG~~L~l~~It 381 (802)
|++...+ ....-.|..++.. +|.| ++..-+ ...|--++.+...+
T Consensus 156 -~~~~~~~~~wd~~~ig~g~~pi~~~~g~l-~~yhg~~~~~~~~Y~~g~~lld~~ 208 (268)
T cd08993 156 -FVLSPRPNHWEQLKIGAGTPPIKTEEGWL-VLYHGVDQSCGSVYRLGAALLDLE 208 (268)
T ss_pred -EEecCCCCceeeceecCCCCCcCcCCCEE-EEEeccCCCCCcEEeeeEEEEccc
Confidence 6654311 1112233556644 5654 444322 24566666665443
No 45
>cd08995 GH32_Aec43_like Glycosyl hydrolase family 32. This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a
Probab=99.04 E-value=1.3e-08 Score=107.99 Aligned_cols=170 Identities=17% Similarity=0.276 Sum_probs=116.9
Q ss_pred eCeeeEEECCEEEEEEEeeeccCC----CceEEEEEEeCCCCCceEeeeeecC------CCceeeeEEEEeCCEEEEEeC
Q 045656 189 ADPFFYLQGNDLYLFYETKNSITM----QGDIGVAKSVDKGATWQQLGIALDE------DWHLSFPYVFDYHGQIYMMPE 258 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~~~----~G~I~va~S~D~g~tw~~~gvvLde------~~HLSyP~VF~~dG~iYMiPE 258 (802)
|||-++..+|+|||||........ .-.+++++|.| +.+|++.+++|.. ...++.|.++.++|++||+--
T Consensus 1 ~d~~~~~~~G~yhlfyq~~p~~~~~~~~~~~wgha~S~D-lv~W~~~~~al~~~~~~~d~~g~~sgs~~~~~g~~~l~YT 79 (280)
T cd08995 1 GDPMPFYDDGTFHIFYLHDPRNGPPEGLRHPWSLLTTKD-LVNYEDHGEAIPRGGDEDDDDAIGTGSVIKGEGTYHAFYT 79 (280)
T ss_pred CCccceEECCEEEEEEEcCCCCCCcccCCceEEEEEccC-cCccEECcceecCCCCcccccCceEeEEEeeCCEEEEEEE
Confidence 699999999999999997655332 23499999988 9999999988854 245888999999999999943
Q ss_pred CC-----CCCeeEEEEeccCCcCceeee--eccC-------CCccCCEEEEEC--CEEEEEEeCCCCCCC-CCCCcEEEE
Q 045656 259 SR-----AKGEVRLYRAVNFPLEWKLEK--IIMK-------KPLVDPFMINHD--GQYWLFGSDHSGFGT-TQNGQLEIW 321 (802)
Q Consensus 259 ss-----~sg~l~LYra~~FP~~We~~~--~Ll~-------~~~vDatI~~~d--G~wwLF~S~~~~~g~-~~n~~L~i~ 321 (802)
.. ....+.+..+.+ +..|+... .+++ ....||.+++++ |+|||++......+. .....+.++
T Consensus 80 g~~~~~~~~~~i~~A~S~D-~~~w~k~~~~pv~~~~~~~~~~~~rDP~Vf~~~~~g~y~m~~g~~~~~~~~~~~g~i~~~ 158 (280)
T cd08995 80 GHNLDGKPKQVVMHATSDD-LITWTKDPEFILIADGEGYEKNDWRDPFVFWNEEEGCYWMLLATRLLDGPYNRRGCIALF 158 (280)
T ss_pred EECCCCCCcEEEEEEECCC-CCccEECCCCeecCCccccccCCccCCcEEEcCCCCeEEEEEEeccCCCCCCCCeEEEEE
Confidence 21 223455655555 47898754 2343 136799999985 999999865321111 122356677
Q ss_pred EEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEc
Q 045656 322 YSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVG 364 (802)
Q Consensus 322 ~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~ 364 (802)
.|++ +-.|+.+. ++.... ....-.+..+|..+|+.|++.
T Consensus 159 ~S~D-l~~W~~~~--~~~~~~-~~~~~E~P~l~~~~g~~~L~~ 197 (280)
T cd08995 159 TSKD-LKNWEYEE--PFYAPG-LYFMPECPDLFKMGDWWYLVY 197 (280)
T ss_pred EeCC-cCcceecC--ceecCC-CcceeecceEEEECCEEEEEE
Confidence 7665 44798763 554321 112346678899999998865
No 46
>cd08995 GH32_Aec43_like Glycosyl hydrolase family 32. This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a
Probab=99.03 E-value=3.7e-08 Score=104.44 Aligned_cols=138 Identities=22% Similarity=0.319 Sum_probs=103.2
Q ss_pred eeeCeeeEEECCEEEEEEEeeecc-CCCceEEEEEEeCCCCCceEee--eeecC-----CCceeeeEEEEeC--CEEEEE
Q 045656 187 FVADPFFYLQGNDLYLFYETKNSI-TMQGDIGVAKSVDKGATWQQLG--IALDE-----DWHLSFPYVFDYH--GQIYMM 256 (802)
Q Consensus 187 F~ADPFll~~~g~~ylF~E~~~~~-~~~G~I~va~S~D~g~tw~~~g--vvLde-----~~HLSyP~VF~~d--G~iYMi 256 (802)
.++ |.+++.++++||||+..... .....|++|+|.| +.+|+..+ ++++. ..++..|.||.++ |++||+
T Consensus 62 ~~s-gs~~~~~g~~~l~YTg~~~~~~~~~~i~~A~S~D-~~~w~k~~~~pv~~~~~~~~~~~~rDP~Vf~~~~~g~y~m~ 139 (280)
T cd08995 62 IGT-GSVIKGEGTYHAFYTGHNLDGKPKQVVMHATSDD-LITWTKDPEFILIADGEGYEKNDWRDPFVFWNEEEGCYWML 139 (280)
T ss_pred ceE-eEEEeeCCEEEEEEEEECCCCCCcEEEEEEECCC-CCccEECCCCeecCCccccccCCccCCcEEEcCCCCeEEEE
Confidence 444 99999999999999986532 2345799999877 78998764 45542 2457899999875 999998
Q ss_pred e--CC-----CCCCeeEEEEeccCCcCceeeeeccCC----CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcC
Q 045656 257 P--ES-----RAKGEVRLYRAVNFPLEWKLEKIIMKK----PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSS 325 (802)
Q Consensus 257 P--Es-----s~sg~l~LYra~~FP~~We~~~~Ll~~----~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdS 325 (802)
= .. ...+.+.+|+..++ ..|+....+... ..+-|.+++++|+||||+|... ...+..++++++
T Consensus 140 ~g~~~~~~~~~~~g~i~~~~S~Dl-~~W~~~~~~~~~~~~~~~E~P~l~~~~g~~~L~~s~~~-----~~~~~~Y~~~~~ 213 (280)
T cd08995 140 LATRLLDGPYNRRGCIALFTSKDL-KNWEYEEPFYAPGLYFMPECPDLFKMGDWWYLVYSEFS-----ENRKTHYRVSKS 213 (280)
T ss_pred EEeccCCCCCCCCeEEEEEEeCCc-CcceecCceecCCCcceeecceEEEECCEEEEEEEecc-----CCCcEEEEEeCC
Confidence 3 22 34578889988775 689887655432 3788999999999999998742 234566778888
Q ss_pred CCCCCee
Q 045656 326 PFGPWKP 332 (802)
Q Consensus 326 plGPW~~ 332 (802)
+.|||+.
T Consensus 214 ~~g~~~~ 220 (280)
T cd08995 214 PFGPWRA 220 (280)
T ss_pred CCCCeEc
Confidence 8999864
No 47
>cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases. The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr
Probab=98.94 E-value=3.5e-08 Score=106.04 Aligned_cols=182 Identities=16% Similarity=0.192 Sum_probs=125.7
Q ss_pred ceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeec-------CCCceeeeEEE--EeCCEEEEE
Q 045656 186 NFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALD-------EDWHLSFPYVF--DYHGQIYMM 256 (802)
Q Consensus 186 ~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLd-------e~~HLSyP~VF--~~dG~iYMi 256 (802)
-.+|||+++.++|++|||.+.-+. .+...++.| ..+|+..+.|+. ..+-.++|.|| +.++++||+
T Consensus 22 ~~lkDPtiv~~nGkYyvYgT~~~~---~~~~s~~~S---f~~Ws~~g~A~q~~l~~~~~~~~fwAPqVfyf~pk~kwYL~ 95 (303)
T cd08987 22 VAIKDPTVVYYNGRYHVYATTADA---GNYGSMYFN---FTDWSQAASATQYYLQNGNMTGYRVAPQVFYFAPQNKWYLI 95 (303)
T ss_pred eeecCCeEEEECCEEEEEEccCCC---CCceeeeec---ccCHhHhccchhhcccCCCCCcccccCEEeeeccCCEEEEE
Confidence 368999999999999999997442 233456665 779988887764 35668999998 778999999
Q ss_pred eCCCCCCeeEEEEeccC---CcCceeeeeccC-------CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCC
Q 045656 257 PESRAKGEVRLYRAVNF---PLEWKLEKIIMK-------KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSP 326 (802)
Q Consensus 257 PEss~sg~l~LYra~~F---P~~We~~~~Ll~-------~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSp 326 (802)
-.. + ... |+..+- |.+|...+.|.+ ...||.+|+-.|++.|||.++ .|+ .||+|+-+
T Consensus 96 Yq~-~--~~~-yaTs~dp~~P~~ws~~qpl~~~~~~~~~~~~ID~~vI~Dd~~~YLff~~-------dnG--~iyra~~~ 162 (303)
T cd08987 96 YQW-W--PAA-YSTNSDISNPNGWSAPQPLFSGTPNGSPGGWIDFWVICDDTNCYLFFSD-------DNG--KLYRSSTT 162 (303)
T ss_pred Eec-C--ceE-EEeCCCCCCCCccCCCcccccCcccCCCCCccceeEEeCCCCEEEEEec-------CCC--eEEEEecc
Confidence 775 2 233 766544 568998887743 247999999999999999976 233 79999999
Q ss_pred CCCCeeCCCCCeeeCC--CCCCcccCCccEEECC--eEEEEcccC---CCCCCceEEEEEeccC-CccceE
Q 045656 327 FGPWKPHKKNPIYNGD--KSLGARNGGRPFVYDG--NLYRVGQDC---AESYGRRVRTFKVEIL-TKNEYK 389 (802)
Q Consensus 327 lGPW~~hp~NPI~~~~--~~~~aR~GG~vF~~dG--kLyRp~QdC---~~~YG~~L~l~~It~L-t~~~y~ 389 (802)
++.+..-..+++.... ....-=+|..|++.+| ++++++--- .+.|.++ .-.+.| -+|+-.
T Consensus 163 ~~nFp~~~~~~~~~~~~~~~~~lfEa~~Vykv~G~~~YlmiveA~g~~~~rYfrs---~Ts~Sl~GpWt~~ 230 (303)
T cd08987 163 LGNFPNGGTETVIIMSDSNKNNLFEASNVYKVKGQNQYLLIVEAIGSDGGRYFRS---WTATSLDGPWTPL 230 (303)
T ss_pred hhhCCCCCCccEEEecCCCccccceeeEEEEECCCeEEEEEEEecCCCCCCeEEE---EEcCCCCCCceec
Confidence 8866544444544432 1111225678888877 777765322 2356666 444555 366554
No 48
>cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J. This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta
Probab=98.92 E-value=2.8e-08 Score=103.61 Aligned_cols=140 Identities=21% Similarity=0.323 Sum_probs=104.0
Q ss_pred ceeeCeeeEEEC-CEEEEEEEeeec-cCCCceEEEEEEeCCCCCceEeeeee-----c-------CCCceeeeEEEEeC-
Q 045656 186 NFVADPFFYLQG-NDLYLFYETKNS-ITMQGDIGVAKSVDKGATWQQLGIAL-----D-------EDWHLSFPYVFDYH- 250 (802)
Q Consensus 186 ~F~ADPFll~~~-g~~ylF~E~~~~-~~~~G~I~va~S~D~g~tw~~~gvvL-----d-------e~~HLSyP~VF~~d- 250 (802)
..+.||.++..+ ++++|||+.... ......|++|+|.| +.+|+..+.++ + +..+...|.||+++
T Consensus 64 ~~~~~p~v~~~~dg~~~~~Yt~~~~~~~~~~~i~~A~S~D-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~dP~v~~~~~ 142 (276)
T cd08979 64 GGVWTPSVVRDPDGTYRMFYTGYDRPKGAVQRIGLATSKD-LIHWTKHGPNPVPRWYESGNPGPWDDHAWRDPAVVRDEE 142 (276)
T ss_pred CCeEcceEEEcCCCeEEEEEecccCCCCCcceEEEEECCC-CCceEECCCCcceeeeecCCCCCcccccccccEEEEECC
Confidence 456789999888 999999998753 12346899999877 88998877543 1 23568899999998
Q ss_pred -CEEEEEeCCC---CCCeeEEEEeccCCcCceeeeec---cC----CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEE
Q 045656 251 -GQIYMMPESR---AKGEVRLYRAVNFPLEWKLEKII---MK----KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLE 319 (802)
Q Consensus 251 -G~iYMiPEss---~sg~l~LYra~~FP~~We~~~~L---l~----~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~ 319 (802)
|++||+-... ..+.|.++++.++ ..|+....+ .. ..+++|.+++.+|+||||++... ...+..
T Consensus 143 ~g~y~m~~~~~~~~~~~~i~~a~S~D~-~~W~~~~~~~~~~~~~~~~~~e~P~~~~~~g~~~l~~~~~~-----~~~~~~ 216 (276)
T cd08979 143 GGGWRMYYGARDADERGAIGLATSPDL-IHWTPVPPPPGPRTGYDDGQLEVPQVVKIDGRWYLLYSGRN-----EDAKTG 216 (276)
T ss_pred CCEEEEEEEeEccCCCcEEEEEECCCC-CcceECCCCCCCCCcccCCcCccceEEEECCEEEEEEEecC-----ccCCcc
Confidence 9999995543 3588889998776 679876653 11 25899999999999999998742 122344
Q ss_pred EEEEcCCCCCCee
Q 045656 320 IWYSSSPFGPWKP 332 (802)
Q Consensus 320 i~~AdSplGPW~~ 332 (802)
++++..+.++|++
T Consensus 217 y~vg~~~~~~~~~ 229 (276)
T cd08979 217 YRVGTALFGPGRP 229 (276)
T ss_pred EEEEecccCCccc
Confidence 5556666777764
No 49
>cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases. The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr
Probab=98.90 E-value=3.8e-08 Score=105.83 Aligned_cols=143 Identities=23% Similarity=0.305 Sum_probs=105.3
Q ss_pred CceeeCeeeE--EECCEEEEEEEeeeccCCCceEEEEEEeCC--CCCceEeeeee-----cCCCceeeeEEEEeCCEEEE
Q 045656 185 SNFVADPFFY--LQGNDLYLFYETKNSITMQGDIGVAKSVDK--GATWQQLGIAL-----DEDWHLSFPYVFDYHGQIYM 255 (802)
Q Consensus 185 ~~F~ADPFll--~~~g~~ylF~E~~~~~~~~G~I~va~S~D~--g~tw~~~gvvL-----de~~HLSyP~VF~~dG~iYM 255 (802)
..|+| |-++ ..+++|||+|.. +.+++++++|- -..|...++.. ..+.+-..++|+.+|++.||
T Consensus 76 ~~fwA-PqVfyf~pk~kwYL~Yq~-------~~~~yaTs~dp~~P~~ws~~qpl~~~~~~~~~~~~ID~~vI~Dd~~~YL 147 (303)
T cd08987 76 GYRVA-PQVFYFAPQNKWYLIYQW-------WPAAYSTNSDISNPNGWSAPQPLFSGTPNGSPGGWIDFWVICDDTNCYL 147 (303)
T ss_pred ccccc-CEEeeeccCCEEEEEEec-------CceEEEeCCCCCCCCccCCCcccccCcccCCCCCccceeEEeCCCCEEE
Confidence 45888 9999 778999999975 35788888773 36687766643 34556789999999999999
Q ss_pred EeCCCCCCeeEEEEec----cCCcCceeeeeccC-----CCccCCEEEEECC--EEEEEEeCCCCCCCCCCCcEEEEEEc
Q 045656 256 MPESRAKGEVRLYRAV----NFPLEWKLEKIIMK-----KPLVDPFMINHDG--QYWLFGSDHSGFGTTQNGQLEIWYSS 324 (802)
Q Consensus 256 iPEss~sg~l~LYra~----~FP~~We~~~~Ll~-----~~~vDatI~~~dG--~wwLF~S~~~~~g~~~n~~L~i~~Ad 324 (802)
+--. .+| .|||+. +||..-.-..++++ +-.|.+.|++++| +|+|+++.+. +. ...+-.+ |+|+
T Consensus 148 ff~~-dnG--~iyra~~~~~nFp~~~~~~~~~~~~~~~~~lfEa~~Vykv~G~~~YlmiveA~g-~~-~~rYfrs-~Ts~ 221 (303)
T cd08987 148 FFSD-DNG--KLYRSSTTLGNFPNGGTETVIIMSDSNKNNLFEASNVYKVKGQNQYLLIVEAIG-SD-GGRYFRS-WTAT 221 (303)
T ss_pred EEec-CCC--eEEEEecchhhCCCCCCccEEEecCCCccccceeeEEEEECCCeEEEEEEEecC-CC-CCCeEEE-EEcC
Confidence 9732 333 899985 58865322223333 2389999999998 9999998862 21 1233445 9999
Q ss_pred CCCCCCeeC---CCCCeeeC
Q 045656 325 SPFGPWKPH---KKNPIYNG 341 (802)
Q Consensus 325 SplGPW~~h---p~NPI~~~ 341 (802)
||.|||+++ ..||+...
T Consensus 222 Sl~GpWt~~a~~e~nPfag~ 241 (303)
T cd08987 222 SLDGPWTPLATTESNPFAGA 241 (303)
T ss_pred CCCCCceecccccCCCcccc
Confidence 999999999 78998775
No 50
>cd08985 GH43_6 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.87 E-value=3.6e-07 Score=97.19 Aligned_cols=192 Identities=18% Similarity=0.119 Sum_probs=130.4
Q ss_pred eCeeeEEECCEEEEEEEeeecc-CCCceEEEEEEeCCCCCceEeeeeecCCC---------ceeeeEEEEe--CCEEEEE
Q 045656 189 ADPFFYLQGNDLYLFYETKNSI-TMQGDIGVAKSVDKGATWQQLGIALDEDW---------HLSFPYVFDY--HGQIYMM 256 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~-~~~G~I~va~S~D~g~tw~~~gvvLde~~---------HLSyP~VF~~--dG~iYMi 256 (802)
.||-+++.++++|+|.|.+... .....|.+.+|.| +.+|+..+.||+... .++.|.|+.+ +|++||+
T Consensus 4 h~~~i~~~~~~yY~ygs~~~~~~~~~~gi~~~sS~D-LvnW~~~g~vl~~~~~~~~~~~~~~~waP~v~y~~~~g~Y~m~ 82 (265)
T cd08985 4 HGGGILKVGGTYYWYGENKGGGDTAFGGVSCYSSTD-LVNWTFEGLALTPEEDSADLGPGRIIERPKVIYNAKTGKYVMW 82 (265)
T ss_pred ccCceEEECCEEEEEEEecCCCCcccccEEEEECCC-CccceECceeccccccccccccCcEEECCeEEEeCCCCEEEEE
Confidence 5788899999999999997532 1346789999887 899999999996542 3899999775 5899998
Q ss_pred e--CCCCCCeeEEEEec-cCCc-Cceeeeecc--CCCccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCC
Q 045656 257 P--ESRAKGEVRLYRAV-NFPL-EWKLEKIIM--KKPLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGP 329 (802)
Q Consensus 257 P--Ess~sg~l~LYra~-~FP~-~We~~~~Ll--~~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGP 329 (802)
- +....+.-.+..|+ +-|. .|+...... ....+|+++|.. ||++||+++.. .+..+.|.. +..+
T Consensus 83 ~~~~~~~~~~~~igvA~Sd~p~Gpf~~~~~~~~~~~~~~Dp~vf~DdDG~~Yl~~~~~------~~~~i~i~~---L~~d 153 (265)
T cd08985 83 MHIDSSDYSDARVGVATSDTPTGPYTYLGSFRPLGYQSRDFGLFVDDDGTAYLLYSDR------DNSDLYIYR---LTDD 153 (265)
T ss_pred EEeCCCCCcceeEEEEEeCCCCCCCEECCccCCCCCCccCCceEEcCCCCEEEEEecC------CCCceEEEE---eCCC
Confidence 3 32223334455554 2344 477543322 345899999999 78999999753 133555544 2234
Q ss_pred CeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCC-ccceEEec
Q 045656 330 WKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILT-KNEYKELE 392 (802)
Q Consensus 330 W~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt-~~~y~E~~ 392 (802)
++.....+..... ...++|..+|+.+|++|++.=.|+.-.+..+...+.+.+. |++.....
T Consensus 154 ~~~~~~~~~~~~~--~~~~EaP~i~K~~g~YYL~~S~~t~~~~~~~~y~~s~s~~GP~~~~~~~ 215 (265)
T cd08985 154 YLSVTGEVTTVFV--GAGREAPAIFKRNGKYYLLTSGLTGWNPNDARYATATSILGPWTDLGNP 215 (265)
T ss_pred cccccceEEEccC--CCccccceEEEECCEEEEEEccCCCccCCceEEEEecCCCCCccccCcC
Confidence 5444444432221 2478999999999999999877754455677888877764 66655543
No 51
>cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J. This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta
Probab=98.85 E-value=1.2e-07 Score=98.92 Aligned_cols=171 Identities=19% Similarity=0.260 Sum_probs=115.0
Q ss_pred eeeCeeeEEECCEEEEEEEeeeccCC---CceEEEEEEeCCCCCceEeeeee--c-----CCCceeeeEEEEeC-CEEEE
Q 045656 187 FVADPFFYLQGNDLYLFYETKNSITM---QGDIGVAKSVDKGATWQQLGIAL--D-----EDWHLSFPYVFDYH-GQIYM 255 (802)
Q Consensus 187 F~ADPFll~~~g~~ylF~E~~~~~~~---~G~I~va~S~D~g~tw~~~gvvL--d-----e~~HLSyP~VF~~d-G~iYM 255 (802)
.+.||=.++ |+++|||........ .-.|++++|.| +.+|+..+.+| . +...++.|.|+..+ |++||
T Consensus 5 ~~~~~~~~~--g~yhlfy~~~~~~~~~~~~~~~~~a~S~D-~~~w~~~~~~l~~~~~~~~~~~~~~~p~v~~~~dg~~~~ 81 (276)
T cd08979 5 IVFNPAVVV--GKYHLFYLAAPRGGGDGNTSRIGAASSDD-GTWWTRPPAPLPPGPPGSFDDGGVWTPSVVRDPDGTYRM 81 (276)
T ss_pred cccCCceEe--eeEEEEEEccCcCcCCCCcceeEEEEcCC-CCccEECCcCccCCCCCchhcCCeEcceEEEcCCCeEEE
Confidence 345666666 899999998765431 34688999877 99999998777 1 12458999999998 99999
Q ss_pred EeCC-----CCCCeeEEEEeccCCcCceeeeecc-------------C-CCccCCEEEEEC--CEEEEEEeCCCCCCCCC
Q 045656 256 MPES-----RAKGEVRLYRAVNFPLEWKLEKIIM-------------K-KPLVDPFMINHD--GQYWLFGSDHSGFGTTQ 314 (802)
Q Consensus 256 iPEs-----s~sg~l~LYra~~FP~~We~~~~Ll-------------~-~~~vDatI~~~d--G~wwLF~S~~~~~g~~~ 314 (802)
+-.. .....+.+..+.+. ..|+.....+ + ....||.|++.+ |+|||+++.... ..
T Consensus 82 ~Yt~~~~~~~~~~~i~~A~S~D~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~dP~v~~~~~~g~y~m~~~~~~~---~~ 157 (276)
T cd08979 82 FYTGYDRPKGAVQRIGLATSKDL-IHWTKHGPNPVPRWYESGNPGPWDDHAWRDPAVVRDEEGGGWRMYYGARDA---DE 157 (276)
T ss_pred EEecccCCCCCcceEEEEECCCC-CceEECCCCcceeeeecCCCCCcccccccccEEEEECCCCEEEEEEEeEcc---CC
Confidence 9543 22355666666554 6788754321 1 248999999998 999999986321 12
Q ss_pred CCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcc
Q 045656 315 NGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQ 365 (802)
Q Consensus 315 n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~Q 365 (802)
...+.+++|+++ -.|+.++..+..........-.+..+|..+|+.|++.-
T Consensus 158 ~~~i~~a~S~D~-~~W~~~~~~~~~~~~~~~~~~e~P~~~~~~g~~~l~~~ 207 (276)
T cd08979 158 RGAIGLATSPDL-IHWTPVPPPPGPRTGYDDGQLEVPQVVKIDGRWYLLYS 207 (276)
T ss_pred CcEEEEEECCCC-CcceECCCCCCCCCcccCCcCccceEEEECCEEEEEEE
Confidence 346677776654 46988775531111111122356778888999988764
No 52
>cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases. Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal
Probab=98.82 E-value=1.4e-07 Score=100.94 Aligned_cols=162 Identities=20% Similarity=0.204 Sum_probs=114.8
Q ss_pred eeeCeeeE-EECCEEEEEEEeeeccC--CCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCCCCC
Q 045656 187 FVADPFFY-LQGNDLYLFYETKNSIT--MQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESRAKG 263 (802)
Q Consensus 187 F~ADPFll-~~~g~~ylF~E~~~~~~--~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss~sg 263 (802)
|+.||-.+ ..+|+|||||....... +.-.+++++|.| +.+|++++++|..+
T Consensus 2 w~nDPng~~~~~G~yhlfyq~~p~~~~~~~~~wgha~S~D-lv~W~~~~~al~p~------------------------- 55 (298)
T cd08996 2 WMNDPNGLVYFNGKYHLFYQYNPFGPVWGNMHWGHATSKD-LVHWEHLPVALAPD------------------------- 55 (298)
T ss_pred CcccCCeeeEECCEEEEEEcCCCCCCCCCCcEEEEEEecC-ccceeECCcccCCC-------------------------
Confidence 78899965 78899999998543322 245789999988 99999988776410
Q ss_pred eeEEEEeccCCcCceeeeeccCCCccCCEEEEEC-CEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeee--
Q 045656 264 EVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHD-GQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYN-- 340 (802)
Q Consensus 264 ~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~d-G~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~-- 340 (802)
..+ -+..+...+++..+ |+++||||............+.+++|++....|++...+|++.
T Consensus 56 -----------~~~------d~~g~~sGsav~~~~g~~~~~YTg~~~~~~~~~~~~~lA~S~ddg~~w~k~~~~~~~~~~ 118 (298)
T cd08996 56 -----------DPY------DSGGCFSGSAVVDDNGKLVLFYTGNVKLDGGRRQTQCLAYSTDDGRTFTKYEGNPVIPPP 118 (298)
T ss_pred -----------Ccc------cCCeEEeCeEEEcCCCcEEEEEeceeCCCCCceEEEEEEEEcCCCCEEEECCCCceEcCC
Confidence 011 11235567777777 9999999974211111233677888887788999999999874
Q ss_pred CCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCCccceEEec
Q 045656 341 GDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE 392 (802)
Q Consensus 341 ~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~ 392 (802)
.......| -..+|..+|++|+..-.........+.+++.++|..|++....
T Consensus 119 ~~~~~~~R-DP~V~~~~g~~~m~~g~~~~~~~~~i~ly~S~Dl~~W~~~~~~ 169 (298)
T cd08996 119 DGYTTHFR-DPKVFWHDGKWYMVLGAGTEDGTGRILLYRSDDLKNWEYLGEL 169 (298)
T ss_pred CCCCCccc-CCeEEeECCEEEEEEEEEecCCCcEEEEEECCCCCCCEEccee
Confidence 21122345 5777888999999876655555678999999999999876543
No 53
>cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs
Probab=98.68 E-value=1.1e-06 Score=94.38 Aligned_cols=188 Identities=15% Similarity=0.180 Sum_probs=123.7
Q ss_pred eEeeeeecCCCceeeeEEEEeCCEEEEEeCCC-CCCeeEEEEeccCCcCceeeeeccC---CCccCCEEEEECCEEEEEE
Q 045656 229 QQLGIALDEDWHLSFPYVFDYHGQIYMMPESR-AKGEVRLYRAVNFPLEWKLEKIIMK---KPLVDPFMINHDGQYWLFG 304 (802)
Q Consensus 229 ~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss-~sg~l~LYra~~FP~~We~~~~Ll~---~~~vDatI~~~dG~wwLF~ 304 (802)
++..+||...+ ..|.|++.++++||+-.+. ....+.+|++.++ ..|+.+...++ +.+..|.+++++|+|||++
T Consensus 5 ~~~nPv~~~~~--~DP~i~~~~~~yY~~~t~~~~~~gi~i~~S~DL-~~W~~~g~~~~~~~~~~WAP~i~~~~gkyy~yy 81 (280)
T cd09002 5 TYRNPILAGDY--PDPSILRDGEDYYMTHSSFKYTPGLVIWHSRDL-VNWTPVGPALPEYEGDVWAPDLCKYDGRYYIYF 81 (280)
T ss_pred cEeCCccCCCC--CCCEEEEECCEEEEEEcchhcCCCEEEEECCCc-CCceEccccccCCCCCEEcCeeEEECCEEEEEE
Confidence 34456776543 5999999999999986542 3468999999987 68998765443 3578999999999999999
Q ss_pred eCCCCCCCCCCCcEEEEEEcCCCCCCeeCC---CC----C-eeeCCC-C-------------------------------
Q 045656 305 SDHSGFGTTQNGQLEIWYSSSPFGPWKPHK---KN----P-IYNGDK-S------------------------------- 344 (802)
Q Consensus 305 S~~~~~g~~~n~~L~i~~AdSplGPW~~hp---~N----P-I~~~~~-~------------------------------- 344 (802)
|.... ..+....+++|++|.|||++.. .+ | |..+++ .
T Consensus 82 s~~~~---~~~~~~~va~ad~p~Gpw~~~~~~~~~~~IDp~vf~DddG~~Yl~~~~~~~~~l~~d~~~~~g~~~~~~~~~ 158 (280)
T cd09002 82 PAIPE---GGNWTNMVIWADSPEGPWSKPIDLKIGGCIDPGHVVDEDGNRYLFLSGGDRVRLTADGLSTDGKLEHVYDGW 158 (280)
T ss_pred EeecC---CCCceEEEEEECCCCCCCcCCEecCCCCccCCceEEcCCCCEEEEECCeeEEEECccccEecCcCEEEecCc
Confidence 97521 1244688999999999997632 01 1 111110 0
Q ss_pred ---------CCcccCCccEEECCeEEEEcc--cC-CCCCCceEEEEEeccC-CccceEEec---c--ccCCCCCCccccc
Q 045656 345 ---------LGARNGGRPFVYDGNLYRVGQ--DC-AESYGRRVRTFKVEIL-TKNEYKELE---G--RNAWNGARYHHLD 406 (802)
Q Consensus 345 ---------~~aR~GG~vF~~dGkLyRp~Q--dC-~~~YG~~L~l~~It~L-t~~~y~E~~---~--~~~w~~~~~Hhld 406 (802)
.....|..+++.+|++|++.= .| ...+++.+.+.+.+.+ .|+++++.. . ....+-.+..|-+
T Consensus 159 ~~~~~~~~~~~~~Egp~~~k~~g~YYl~yS~g~~~~~~~~~~v~~ars~s~~GP~~~~~~~pi~~~~~~~~~~~g~GH~~ 238 (280)
T cd09002 159 RYPEDWVVEGFALEGPKLKKRNGYYYLTTAVGGTAGPPTGHMVVAARSKSVHGPWENSPYNPLVRTQSPQEPWWSKGHAT 238 (280)
T ss_pred ccccccccCCcccccceEEEECCEEEEEEccCCCCCCCCCEEEEEEECCCCCCCCccCCCCcEEecCCCCCCceeCCCCc
Confidence 002366777888999988663 33 2356778888887755 455544321 1 1111112455668
Q ss_pred cccCCCCCeEEEEeCc
Q 045656 407 AQQLSSGEWIAVMDGD 422 (802)
Q Consensus 407 ~~~l~~g~~i~vvDG~ 422 (802)
+-+-++|+|.+|.=+.
T Consensus 239 i~~~~~g~~~~vyH~~ 254 (280)
T cd09002 239 LVDGPDGQWWMVYHAY 254 (280)
T ss_pred EEECCCCCEEEEEEee
Confidence 7777788888887654
No 54
>cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=98.67 E-value=3.6e-07 Score=96.82 Aligned_cols=125 Identities=21% Similarity=0.424 Sum_probs=93.1
Q ss_pred eeeeEEEEeCCEEEEEeCCCC----CCeeEEEEeccCCcCceeeeeccC--------CCccCCEEEEECCEEEEEEeCCC
Q 045656 241 LSFPYVFDYHGQIYMMPESRA----KGEVRLYRAVNFPLEWKLEKIIMK--------KPLVDPFMINHDGQYWLFGSDHS 308 (802)
Q Consensus 241 LSyP~VF~~dG~iYMiPEss~----sg~l~LYra~~FP~~We~~~~Ll~--------~~~vDatI~~~dG~wwLF~S~~~ 308 (802)
+..|.|++++|++||+..... ...+.+|+.+++ ..|+.+..++. ..+..|.+++++|+|||+||..
T Consensus 8 ~~DP~i~~~~g~yY~~~t~~~~~~~~~~~~~~~S~Dl-~~W~~~g~~l~~~~~~~~~~~~wAP~v~~~~g~yy~yys~~- 85 (275)
T cd09004 8 YADPEIRIFGGTYYIYPTSDGAGGEQTPFDVFSSKDL-VNWTKEGIILDMADVSWANRAAWAPSVIERNGKYYFYFSAN- 85 (275)
T ss_pred CCCCCeEEECCEEEEEEeccCCCCCeeEEEEEECCCC-CCceECcccccccCCcccCCCcCCCeEEEECCEEEEEEEcC-
Confidence 688999999999999975432 256889999887 78998765442 2488999999999999999873
Q ss_pred CCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCC-CCCcccCCccEEE-CCeEEEEcccCCCCCCceEEEEEe
Q 045656 309 GFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDK-SLGARNGGRPFVY-DGNLYRVGQDCAESYGRRVRTFKV 380 (802)
Q Consensus 309 ~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~-~~~aR~GG~vF~~-dGkLyRp~QdC~~~YG~~L~l~~I 380 (802)
..+.+++|++|.|||+....+|++.... ...++ -+.+|.+ ||+.|+....- ..+.+.++
T Consensus 86 -------~~i~va~s~~p~gp~~~~~~~p~~~~~~~~~~~i-Dp~vf~d~dG~~yl~~~~~-----~~~~i~~l 146 (275)
T cd09004 86 -------GGIGVAVADSPLGPFKDALGKPLIDKFTFGAQPI-DPDVFIDDDGQAYLYWGGW-----GHCNVAKL 146 (275)
T ss_pred -------CcEEEEEeCCCCCCCCCCCCCccccCCcCCCCcc-CCCeEECCCCCEEEEEcCc-----CCEEEEEE
Confidence 3688999999999999866678775421 11122 2567875 89999987541 34555555
No 55
>COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=98.63 E-value=2.4e-06 Score=98.20 Aligned_cols=236 Identities=19% Similarity=0.290 Sum_probs=150.3
Q ss_pred CCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC--------C-
Q 045656 168 VANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE--------D- 238 (802)
Q Consensus 168 ~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde--------~- 238 (802)
++|||+. .|..||-+++.++.+||-.+.|+. ..| +.++.|.| +.+|+.....|+. .
T Consensus 21 i~NPvl~-----------gf~PDpSi~rvg~dyYia~stF~~--fpG-l~i~hS~D-L~nW~~v~tpl~~~~~ld~kgn~ 85 (549)
T COG3507 21 ILNPVLA-----------GFNPDPSIVRVGDDYYIATSTFEW--FPG-LAIHHSRD-LVNWTLVSTPLIRTSQLDLKGNF 85 (549)
T ss_pred ccCcccc-----------ccCCCCceEecCCceEEEcceEEE--cCc-eeeecccc-ccCcEEecccccCcchhhhhccc
Confidence 6899998 477999999999999998887765 345 88899988 9999998874433 2
Q ss_pred ---CceeeeEEEEeCCEEEEEeC----CC---CCCeeEEEEeccCCcCceeeeeccCC-CccCCEEEEE-CCEEEEEEeC
Q 045656 239 ---WHLSFPYVFDYHGQIYMMPE----SR---AKGEVRLYRAVNFPLEWKLEKIIMKK-PLVDPFMINH-DGQYWLFGSD 306 (802)
Q Consensus 239 ---~HLSyP~VF~~dG~iYMiPE----ss---~sg~l~LYra~~FP~~We~~~~Ll~~-~~vDatI~~~-dG~wwLF~S~ 306 (802)
--+|+|.|-.+||++||+-- .. ++....|+.|..---.|.. ++.+.. ..+||++|.. ||+-||++..
T Consensus 86 ~~S~giWAPdl~y~dGkfwl~ytdvk~~~g~~k~~~nyl~t~~s~~G~WsD-pi~l~~~~~iDPslf~D~dGr~wlv~~~ 164 (549)
T COG3507 86 PYSGGIWAPDLSYHDGKFWLYYTDVKRSGGPYKNAGNYLVTAESIDGPWSD-PIKLNGSNAIDPSLFFDKDGRKWLVNGS 164 (549)
T ss_pred CCCCceeccceecCCCcEEEEEecccccCCcccccccEEEEecCCCCCccc-ceecCCcCccCCceeecCCCCEEEEecc
Confidence 34899999999999999952 22 3344666665443345753 333344 4999999998 9999999965
Q ss_pred CCCCCCCCC--CcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCC-CCCCceEEEEEeccC
Q 045656 307 HSGFGTTQN--GQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCA-ESYGRRVRTFKVEIL 383 (802)
Q Consensus 307 ~~~~g~~~n--~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~-~~YG~~L~l~~It~L 383 (802)
.+. +.... +.+-+=.-+....+-... .-+++-+-.....-.|..+++.+|-+|+.+-.|. ..||+.+.+.|...+
T Consensus 165 w~~-~~~~~~~~~i~l~~~~~~~~~l~g~-~~~~~~~G~~~~~~EGPhl~k~~gYYYL~~a~gG~t~~gh~~~vaRSKsi 242 (549)
T COG3507 165 WDG-GIFMHSFAGIILQEYDKTTQKLVGQ-GYKIIFDGGNGGLTEGPHLYKKTGYYYLYVAEGGLTTYGHAIRVARSKSI 242 (549)
T ss_pred cCC-CcccccccceeeeeccccccccCCc-cceeEeccCCCccccCceeeccCCEEEEEEEcCCCCccceeEEEEeccCC
Confidence 321 11111 111111101111111100 0122222111234566777888999999999998 999999999999998
Q ss_pred CccceEEec----------cccCCCCCCccccccccCCCCCeEEEEe-Cccc
Q 045656 384 TKNEYKELE----------GRNAWNGARYHHLDAQQLSSGEWIAVMD-GDRA 424 (802)
Q Consensus 384 t~~~y~E~~----------~~~~w~~~~~Hhld~~~l~~g~~i~vvD-G~r~ 424 (802)
+-- |+-.+ ++..|.+++ |-++-.=+.|+|....- |.+.
T Consensus 243 dGP-Ye~~~~~pllt~~~~p~~~~q~~g--h~~~v~t~~g~w~~~~~~grp~ 291 (549)
T COG3507 243 DGP-YEDHPGNPLLTSRDNPENPLQKAG--HGTLVVTPTGEWYFAYLLGRPG 291 (549)
T ss_pred CCC-cccCCCCeeeeecCCCCChhhhcC--CcceEECCCCcEeeeeeccccC
Confidence 732 44443 233333222 22333344578888877 4443
No 56
>smart00640 Glyco_32 Glycosyl hydrolases family 32.
Probab=98.61 E-value=7e-07 Score=101.59 Aligned_cols=165 Identities=19% Similarity=0.174 Sum_probs=110.1
Q ss_pred CCceeeCeeeE-EECCEEEEEEEeeeccCC--CceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCC
Q 045656 184 PSNFVADPFFY-LQGNDLYLFYETKNSITM--QGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESR 260 (802)
Q Consensus 184 ~~~F~ADPFll-~~~g~~ylF~E~~~~~~~--~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss 260 (802)
+..|+.||-.+ ..+|+|||||.-...... .-.+++++|.| +.+|+.+++||..
T Consensus 5 ~~gw~NDPnGl~~~~G~yHlFyq~~p~~~~~g~~~Wgha~S~D-lv~W~~~~~aL~P----------------------- 60 (437)
T smart00640 5 PKGWMNDPNGLIYYKGKYHLFYQYNPFGPVWGNIHWGHAVSKD-LVHWTHLPVALAP----------------------- 60 (437)
T ss_pred CcCccCCCCeeeEECCEEEEEEecCCCCCCCCCeEEEEEEcCC-cceeeecCcccCC-----------------------
Confidence 45699999954 788999999985433222 33689999987 9999998877641
Q ss_pred CCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCC-CCCC--CCCCcEEEEEEcCCCCCCeeCCCCC
Q 045656 261 AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHS-GFGT--TQNGQLEIWYSSSPFGPWKPHKKNP 337 (802)
Q Consensus 261 ~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~-~~g~--~~n~~L~i~~AdSplGPW~~hp~NP 337 (802)
..+. -+..+.+.+++..+|+++||||... .... ....+..++.+++.+..|++++.||
T Consensus 61 --------------~~~~-----d~~g~~sGsav~~~~~~~~~YTg~~~~~~~~~~~~~~~~~~ass~d~~~w~k~~~~P 121 (437)
T smart00640 61 --------------DEWY-----DSNGVFSGSAVIDPGNLSLLYTGNVAIDTNVQVQRQAQQLAASDDLGGTWTKYPGNP 121 (437)
T ss_pred --------------CCcC-----CCCcEEEEEEEECCCceEEEEcCCcccccccCcccEEEEEEEECCCCCeeEECCCCc
Confidence 1110 0123677888889999999999752 1110 1112334666677788999999999
Q ss_pred eeeCCCC---CCcccCCccEEEC-CeEEEEcccCCCCCCceEEEEEeccCCccceEEec
Q 045656 338 IYNGDKS---LGARNGGRPFVYD-GNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE 392 (802)
Q Consensus 338 I~~~~~~---~~aR~GG~vF~~d-GkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~ 392 (802)
|+...+. ...| -..+|..+ |++|+..-.....=+..+.+++.++|..|+|....
T Consensus 122 vi~~~p~~~~~~fR-DP~Vf~~~~~~~~m~~g~~~~~~~G~i~ly~S~Dl~~W~~~~~~ 179 (437)
T smart00640 122 VLVPPPGIGTEHFR-DPKVFWYDGDKWYMVIGASDEDKTGIALLYRSTDLKNWTLLGEL 179 (437)
T ss_pred EEeCCCCCCCCCcC-CCCccEECCCEEEEEEEEEecCCCeEEEEEECCCcccCeECCcc
Confidence 9975321 1122 25667766 48888653222111455999999999999987654
No 57
>cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases. Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal
Probab=98.52 E-value=1.6e-05 Score=85.19 Aligned_cols=119 Identities=22% Similarity=0.305 Sum_probs=91.8
Q ss_pred eeeCeeeEEEC-CEEEEEEEeeecc--CCCceEEEEEEeCCCCCceEee--eeec----CCCceeeeEEEEeCCEEEEEe
Q 045656 187 FVADPFFYLQG-NDLYLFYETKNSI--TMQGDIGVAKSVDKGATWQQLG--IALD----EDWHLSFPYVFDYHGQIYMMP 257 (802)
Q Consensus 187 F~ADPFll~~~-g~~ylF~E~~~~~--~~~G~I~va~S~D~g~tw~~~g--vvLd----e~~HLSyP~VF~~dG~iYMiP 257 (802)
.++ |-++..+ ++++|||+..... ..+..|++|.|.|++.+|+..+ +++. +..|.-.|+||.++|++||+-
T Consensus 63 ~~s-Gsav~~~~g~~~~~YTg~~~~~~~~~~~~~lA~S~ddg~~w~k~~~~~~~~~~~~~~~~~RDP~V~~~~g~~~m~~ 141 (298)
T cd08996 63 CFS-GSAVVDDNGKLVLFYTGNVKLDGGRRQTQCLAYSTDDGRTFTKYEGNPVIPPPDGYTTHFRDPKVFWHDGKWYMVL 141 (298)
T ss_pred EEe-CeEEEcCCCcEEEEEeceeCCCCCceEEEEEEEEcCCCCEEEECCCCceEcCCCCCCCcccCCeEEeECCEEEEEE
Confidence 344 7777777 9999999986531 3467889999987799998865 2331 235788999999999999995
Q ss_pred CCC---CCCeeEEEEeccCCcCceeeeecc-C-----CCccCCEEEEEC--CEEEEEEeCC
Q 045656 258 ESR---AKGEVRLYRAVNFPLEWKLEKIIM-K-----KPLVDPFMINHD--GQYWLFGSDH 307 (802)
Q Consensus 258 Ess---~sg~l~LYra~~FP~~We~~~~Ll-~-----~~~vDatI~~~d--G~wwLF~S~~ 307 (802)
-+. ..+.+.+|++.+. ..|+....+. . ...+=|-+|+.+ |+|+|++|..
T Consensus 142 g~~~~~~~~~i~ly~S~Dl-~~W~~~~~~~~~~~~~~~~~EcP~l~~l~~~~k~vL~~s~~ 201 (298)
T cd08996 142 GAGTEDGTGRILLYRSDDL-KNWEYLGELLTSLGDFGYMWECPDLFPLDVEGKWVLIFSPQ 201 (298)
T ss_pred EEEecCCCcEEEEEECCCC-CCCEEcceecccCCCccceEeCCcEEEECCCCeEEEEECCC
Confidence 443 4589999998876 6798876542 1 247899999999 9999999875
No 58
>cd08982 GH43_3 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.51 E-value=2.6e-06 Score=92.29 Aligned_cols=158 Identities=17% Similarity=0.320 Sum_probs=102.9
Q ss_pred eeeeEEEEeCCEEEEEeCCCCCCeeEEEEeccCCcCceeeee-ccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEE
Q 045656 241 LSFPYVFDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKI-IMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLE 319 (802)
Q Consensus 241 LSyP~VF~~dG~iYMiPEss~sg~l~LYra~~FP~~We~~~~-Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~ 319 (802)
+..|.|++++|++||+..+.. .+|+++++ .+|+.+.. +....+.+|.|++++|++|++++.. +..
T Consensus 3 ~~DP~i~~~~g~YY~~~T~~~----~i~~S~DL-~~W~~~g~~~~~~~~WAP~i~~~~g~~Y~~~~~~---------~~~ 68 (295)
T cd08982 3 AADPVVILFKGEYYLFASMSG----GYWHSSDL-IDWDFIPTNSLPDEGYAPAVFVYDGTLYYTASTY---------NSR 68 (295)
T ss_pred CCCCeEEEECCEEEEEEeCCC----CeEECCCc-CCceECCcccCCCCcCcCEEEEECCEEEEEEeCC---------Cce
Confidence 467999999999999998843 27999886 78998765 4456799999999999999988752 356
Q ss_pred EEEEcCCCCC-CeeCCCCCeeeCCCCCCcccCCccEEE-CCeEEEEcccCCCCCCceEEEEEeccCCccceEEe------
Q 045656 320 IWYSSSPFGP-WKPHKKNPIYNGDKSLGARNGGRPFVY-DGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKEL------ 391 (802)
Q Consensus 320 i~~AdSplGP-W~~hp~NPI~~~~~~~~aR~GG~vF~~-dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~------ 391 (802)
+++|++|+|| |+.+.. + .. ..---+.+|++ ||+.|+..-. ....+|.+.|++.-+.....|.
T Consensus 69 v~~s~~p~gp~w~~~~~-~---~~---~~~IDp~vf~DdDGk~Yl~~g~---~~~~~i~~~eL~~d~~~~~g~~~~l~~~ 138 (295)
T cd08982 69 IYKTADPLSGPWEEVDK-S---FP---PGLADPALFIDDDGRLYLYYGC---SNNYPLRGVEVDPDTFRPIGEPVELIPG 138 (295)
T ss_pred EEEeCCCCCCCcccccc-c---cC---CCccCCceEECCCCCEEEEEec---CCCCCeEEEEECcccCCccCcceEEEeC
Confidence 8899999975 876521 1 10 01112577887 5999998632 1234577777642111111111
Q ss_pred -ccccCCCCCCcccccccc--CCCCCeEEEEeCc
Q 045656 392 -EGRNAWNGARYHHLDAQQ--LSSGEWIAVMDGD 422 (802)
Q Consensus 392 -~~~~~w~~~~~Hhld~~~--l~~g~~i~vvDG~ 422 (802)
.....|...+.|+.+... ..+|-++.-.+|.
T Consensus 139 ~~~~~~We~~g~~~~~~~~~~~~EGP~i~k~~G~ 172 (295)
T cd08982 139 NPDKHGWERFGENNDNPDKTPWMEGAWMTKHNGK 172 (295)
T ss_pred CCCCcCeEecCcccccccCCccccccEEEEECCE
Confidence 134568887877755422 3344455555554
No 59
>cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended
Probab=98.51 E-value=2e-06 Score=91.58 Aligned_cols=124 Identities=17% Similarity=0.281 Sum_probs=90.1
Q ss_pred eeeeEEEEeCCEEEEEeCCC-CCCeeEEEEeccCCcCceeeeeccC-------------CCccCCEEEEECCEEEEEEeC
Q 045656 241 LSFPYVFDYHGQIYMMPESR-AKGEVRLYRAVNFPLEWKLEKIIMK-------------KPLVDPFMINHDGQYWLFGSD 306 (802)
Q Consensus 241 LSyP~VF~~dG~iYMiPEss-~sg~l~LYra~~FP~~We~~~~Ll~-------------~~~vDatI~~~dG~wwLF~S~ 306 (802)
...|.|+++++.+||+-.+. ....+.+|+++++ ..|+.+...++ ..+..|.|++++|+|||+++.
T Consensus 8 ~~DP~ii~~~~~yY~~~t~~~~~~g~~~~~S~DL-~~W~~~g~~~~~~~~~~~~~~~~~~~~WAP~v~~~~G~yy~yy~~ 86 (269)
T cd08989 8 NPDPSIIRAGDDYYMASSTFEWFPGVQIHHSTDL-VNWHLIGHPLDRLEDLDMKGNPYSGGIWAPCLSYYDGKFWLIYTA 86 (269)
T ss_pred CCCCcEEEECCeEEEEECccccCCCcEEEECCcc-CCCEEccccccCccccccccCCCCCcEEcceEEEECCEEEEEEec
Confidence 35899999999999997553 2356999999987 78998643221 147899999999999999987
Q ss_pred CCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEE-CCeEEEEcccCCCCCCceEEEEEec
Q 045656 307 HSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVY-DGNLYRVGQDCAESYGRRVRTFKVE 381 (802)
Q Consensus 307 ~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~-dGkLyRp~QdC~~~YG~~L~l~~It 381 (802)
... .....+++++|++|.|||+. |+.... .---+.+|.+ ||+.|+..-. ..+|.+.|++
T Consensus 87 ~~~---~~~~~i~va~sd~~~Gpw~~----~~~~~~----~~IDp~~f~D~dG~~Yl~~~~-----~~~i~l~~l~ 146 (269)
T cd08989 87 VKV---WKDCHNYLFTAEDITGPWSR----PIFLNY----GGFDPSLFHDDDGKKYLINMG-----WSGIRLQEYS 146 (269)
T ss_pred ccc---CCCceEEEEEECCCCCCCcC----CEECCC----CcccCceEEcCCCCEEEEecC-----CCcEEEEEEC
Confidence 522 22346889999999999984 554321 1112567875 8999998632 2567777764
No 60
>TIGR01322 scrB_fam sucrose-6-phosphate hydrolase.
Probab=98.41 E-value=5.3e-06 Score=94.64 Aligned_cols=163 Identities=14% Similarity=0.111 Sum_probs=109.0
Q ss_pred CCceeeCeeeE-EECCEEEEEEEeeeccCC--CceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCC
Q 045656 184 PSNFVADPFFY-LQGNDLYLFYETKNSITM--QGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESR 260 (802)
Q Consensus 184 ~~~F~ADPFll-~~~g~~ylF~E~~~~~~~--~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss 260 (802)
+..|+.||-.+ ..+|+|||||.-...... .-..++++|.| +.+|+++++||... .
T Consensus 22 ~~gw~nDPng~~~~~G~yHlfyq~~p~~~~~g~~~Wgha~S~D-lv~W~~~~~al~P~--------------------~- 79 (445)
T TIGR01322 22 QTGLLNDPNGLIYFKGEYHLFYQWFPFGPVHGLKSWGHYTSKD-LVHWEDEGVALAPD--------------------D- 79 (445)
T ss_pred CcCCccCCCcceEECCEEEEEEccCCCCCccCceEEEEEECCC-ccccEECCccCcCC--------------------C-
Confidence 45799999987 669999999975433222 23578999987 99999998877411 0
Q ss_pred CCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCC-CCcEEEEEEcCCCCCCeeCCCCCee
Q 045656 261 AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQ-NGQLEIWYSSSPFGPWKPHKKNPIY 339 (802)
Q Consensus 261 ~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~-n~~L~i~~AdSplGPW~~hp~NPI~ 339 (802)
.|+ +..+...+++..+|+++||||......... .....+++|++ .+.|++.+. ||+
T Consensus 80 ---------------~~d------~~G~~sGsav~~~g~~~l~YTg~~~~~~~~~~~~q~lA~S~D-g~~~~k~~~-pvi 136 (445)
T TIGR01322 80 ---------------PYD------SHGCYSGSAVDNNGQLTLMYTGNVRDSDWNRESYQCLATMDD-DGHFEKFGI-VVI 136 (445)
T ss_pred ---------------ccc------CCceEECeEEeeCCEEEEEEeccccCCCCCeeEEEEEEEcCC-CCeEEECCC-ceE
Confidence 111 123557777889999999999742111111 11234777776 679999864 998
Q ss_pred eCCCCC---CcccCCccEEECCeEEEEcccCCCCCCceEEEEEeccCCccceEEec
Q 045656 340 NGDKSL---GARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE 392 (802)
Q Consensus 340 ~~~~~~---~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~ 392 (802)
...+.. ..| -..+|..+|++|+..--....-+..+.+++.++|..|+|....
T Consensus 137 ~~~~~~~~~~fR-DP~V~~~~g~~~M~~g~~~~~~~g~i~ly~S~Dl~~W~~~g~~ 191 (445)
T TIGR01322 137 ELPPAGYTAHFR-DPKVWKHNGHWYMVIGAQTETEKGSILLYRSKDLKNWTFVGEI 191 (445)
T ss_pred eCCCCCCcCcCC-CCcEEeECCEEEEEEEEecCCCceEEEEEECCCcccCeEeccc
Confidence 753211 112 3567778999998764333333456899999999999887654
No 61
>cd08983 GH43_4 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.40 E-value=2.4e-05 Score=84.05 Aligned_cols=139 Identities=13% Similarity=0.204 Sum_probs=100.1
Q ss_pred ceeeCeeeEEE--CCEEEEEEEeeecc----CCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCC
Q 045656 186 NFVADPFFYLQ--GNDLYLFYETKNSI----TMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPES 259 (802)
Q Consensus 186 ~F~ADPFll~~--~g~~ylF~E~~~~~----~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEs 259 (802)
..+| |.++.. +++|+||+...... ...-.|.++.+.| ..+|+..++.++.......+.||+++|++||+-.+
T Consensus 77 ~~WA-Pev~~d~~~g~y~~~~s~~~~~~~~~~~~~~i~~~tt~D-f~tft~p~~~~~~~~~~ID~~v~~~~g~~Yl~~k~ 154 (276)
T cd08983 77 NTWA-PEAFWDAERGQYVVYWSSRLYDNTGGFYNYRLYATTTSD-FVTFTEPKVWIDLGANVIDTTVVKVGGTYYRFYKN 154 (276)
T ss_pred cEeC-ccceEcCCCCeEEEEEecccCCCCCCCccEEEEEEecCc-ccccCCCeEeecCCCCeEeeEEEEeCCEEEEEEec
Confidence 4566 999966 79999999986542 1223454444334 77899888888888889999999999999999655
Q ss_pred CCCCeeEEEEeccCCcCceeeee--ccC-CCccCCEEEEECC--EEEEEEeCCCCCCCCCCCcEEEEEEcCCC-CCCee
Q 045656 260 RAKGEVRLYRAVNFPLEWKLEKI--IMK-KPLVDPFMINHDG--QYWLFGSDHSGFGTTQNGQLEIWYSSSPF-GPWKP 332 (802)
Q Consensus 260 s~sg~l~LYra~~FP~~We~~~~--Ll~-~~~vDatI~~~dG--~wwLF~S~~~~~g~~~n~~L~i~~AdSpl-GPW~~ 332 (802)
...+.|.+.++.+.-..|+.... ... ...+.|++++.++ +||||+... + ......+.++++. +.|++
T Consensus 155 ~~~~~i~~~~s~~l~g~~~~~~~~~~~~~~~~EgP~v~k~~~~~~y~L~~d~y---~---~~~Y~~~~t~d~~~~~~~~ 227 (276)
T cd08983 155 EGSKDIELARSKSLTGPWTIVGTGDAGWGGAVEGPTVFKLNNGGGWYLYGDNY---S---GGGYYPFDTSDLASTSWTK 227 (276)
T ss_pred CCCCcEEEEEeCCCCCCceEecccccCCCCceeCCeEEEECCCCEEEEEEEEC---C---CCCeEEEEecCcCCCceec
Confidence 44577888888776556765432 122 3589999999987 999999763 2 3456677777774 45653
No 62
>cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function. This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=98.40 E-value=2e-05 Score=83.54 Aligned_cols=151 Identities=17% Similarity=0.265 Sum_probs=97.4
Q ss_pred CCeEEEEEecCCCCccCccccccccCCCCCCCCCCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCc
Q 045656 135 GSWSIGVFFGNSPFSLKPIETANVWRDDSAAWPVANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQG 214 (802)
Q Consensus 135 ~~Wsig~~~g~~p~~l~p~~~~~~~~~~~~~w~~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G 214 (802)
+.=.||++...|-.+.+- ..+|++...+ +.......+.||.++..++++||+|+..+....+.
T Consensus 23 ~~~~ig~A~S~Dg~~~~~---------------~~~~~i~p~~--~~~~~~~gv~dP~v~~~~g~y~m~Yta~~~~~~~~ 85 (268)
T cd08993 23 GVIRLGLARSRDGLHFEI---------------DPDPPVWPPP--EDGFEEGGVEDPRIVKIDDTYYITYAARPNAPNGT 85 (268)
T ss_pred CceEEEEEEECCCceEEE---------------CCcceEcCCC--CCcccccCccCcEEEEECCEEEEEEEccCCCCCCc
Confidence 455788888877433211 1344443211 11112346779999999999999999976433567
Q ss_pred eEEEEEEeCCCCCceEeeeeecCCCceeeeEEE--EeCCEEEEE--eCC---CCCCeeEEEEeccCCcCceeeeeccCC-
Q 045656 215 DIGVAKSVDKGATWQQLGIALDEDWHLSFPYVF--DYHGQIYMM--PES---RAKGEVRLYRAVNFPLEWKLEKIIMKK- 286 (802)
Q Consensus 215 ~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF--~~dG~iYMi--PEs---s~sg~l~LYra~~FP~~We~~~~Ll~~- 286 (802)
.|++|+|.| +.+|+..+.+++... -.+.+| +.+|++||+ |.. .....|-|.+..+. ..|+.+..++..
T Consensus 86 ~i~lA~S~D-~~~W~~~~~~~~~~~--~d~~~~p~~~~g~y~m~~r~~~~~~~~~~~I~lA~S~Dl-~~W~~~~~~~~~~ 161 (268)
T cd08993 86 RIGLATTKD-FITFERLGTSLVPNN--RDGILFPEKINGKYVMLHRPFEYGGTSPPDMWLSFSPDL-VHWGNHRFVLSPR 161 (268)
T ss_pred EEEEEEeCC-cceEEEecccCCCCC--CCEEEeeEEECCEEEEEEccccCCCCCCCcEEEEECCCc-CccCCCeEEecCC
Confidence 899999977 899999886554322 245666 368999999 332 23566666666554 689876654421
Q ss_pred --------CccCCEEEEECCEEEEEEeC
Q 045656 287 --------PLVDPFMINHDGQYWLFGSD 306 (802)
Q Consensus 287 --------~~vDatI~~~dG~wwLF~S~ 306 (802)
-...|..++.+..|+|+|..
T Consensus 162 ~~~wd~~~ig~g~~pi~~~~g~l~~yhg 189 (268)
T cd08993 162 PNHWEQLKIGAGTPPIKTEEGWLVLYHG 189 (268)
T ss_pred CCceeeceecCCCCCcCcCCCEEEEEec
Confidence 12346677666558999954
No 63
>COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=98.29 E-value=2.7e-05 Score=89.79 Aligned_cols=214 Identities=20% Similarity=0.274 Sum_probs=124.4
Q ss_pred CCceeeCeeeEEECCEEEEEEEeeeccC----CCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEE-EeCCEEEEEeC
Q 045656 184 PSNFVADPFFYLQGNDLYLFYETKNSIT----MQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVF-DYHGQIYMMPE 258 (802)
Q Consensus 184 ~~~F~ADPFll~~~g~~ylF~E~~~~~~----~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF-~~dG~iYMiPE 258 (802)
...-|| |-+..++|++||+|+...... ..+.+-+-.. +-...|.+... |... --..|.+| +.||+.||+=-
T Consensus 88 S~giWA-Pdl~y~dGkfwl~ytdvk~~~g~~k~~~nyl~t~~-s~~G~WsDpi~-l~~~-~~iDPslf~D~dGr~wlv~~ 163 (549)
T COG3507 88 SGGIWA-PDLSYHDGKFWLYYTDVKRSGGPYKNAGNYLVTAE-SIDGPWSDPIK-LNGS-NAIDPSLFFDKDGRKWLVNG 163 (549)
T ss_pred CCceec-cceecCCCcEEEEEecccccCCcccccccEEEEec-CCCCCccccee-cCCc-CccCCceeecCCCCEEEEec
Confidence 345688 999999999999997654432 1133422221 22357877543 3322 13578884 66899999944
Q ss_pred CCCCC------eeEEEEecc---CCcCceeeeeccCC----CccCCEEEEECCEEEEEEeCCCCCC-CCCCCcEEEEEEc
Q 045656 259 SRAKG------EVRLYRAVN---FPLEWKLEKIIMKK----PLVDPFMINHDGQYWLFGSDHSGFG-TTQNGQLEIWYSS 324 (802)
Q Consensus 259 ss~sg------~l~LYra~~---FP~~We~~~~Ll~~----~~vDatI~~~dG~wwLF~S~~~~~g-~~~n~~L~i~~Ad 324 (802)
+...+ ...++.+.+ ++..=+..++++++ -.+.|.+.+++|.|||+.+.. | +.-.....+++|.
T Consensus 164 ~w~~~~~~~~~~~i~l~~~~~~~~~l~g~~~~~~~~G~~~~~~EGPhl~k~~gYYYL~~a~g---G~t~~gh~~~vaRSK 240 (549)
T COG3507 164 SWDGGIFMHSFAGIILQEYDKTTQKLVGQGYKIIFDGGNGGLTEGPHLYKKTGYYYLYVAEG---GLTTYGHAIRVARSK 240 (549)
T ss_pred ccCCCcccccccceeeeeccccccccCCccceeEeccCCCccccCceeeccCCEEEEEEEcC---CCCccceeEEEEecc
Confidence 33333 223333322 11111112333432 378999999999999999863 3 3334467799999
Q ss_pred CCCCCCeeCCCCCeeeCCC----CCCcccCCccEEE-CCeEEEEcccCCCCCC-ceEEEEEeccCCccceEEeccccCCC
Q 045656 325 SPFGPWKPHKKNPIYNGDK----SLGARNGGRPFVY-DGNLYRVGQDCAESYG-RRVRTFKVEILTKNEYKELEGRNAWN 398 (802)
Q Consensus 325 SplGPW~~hp~NPI~~~~~----~~~aR~GG~vF~~-dGkLyRp~QdC~~~YG-~~L~l~~It~Lt~~~y~E~~~~~~w~ 398 (802)
++.|||+.||.||++.... ....+.+|..++. +|+.|...-...+.+| ....+-|.+.+-+=++.+ .||
T Consensus 241 sidGPYe~~~~~pllt~~~~p~~~~q~~gh~~~v~t~~g~w~~~~~~grp~~~~~~~~lGret~~~~v~w~~-----gwp 315 (549)
T COG3507 241 SIDGPYEDHPGNPLLTSRDNPENPLQKAGHGTLVVTPTGEWYFAYLLGRPGTGYGYCALGRETGLQPLTWHD-----GWP 315 (549)
T ss_pred CCCCCcccCCCCeeeeecCCCCChhhhcCCcceEECCCCcEeeeeeccccCCCCCceeccceeeeeEEEeec-----CCC
Confidence 9999999999999996421 1112234554444 7777775543334444 333444443333323333 577
Q ss_pred CCC-cccccccc
Q 045656 399 GAR-YHHLDAQQ 409 (802)
Q Consensus 399 ~~~-~Hhld~~~ 409 (802)
..+ .|..-+|+
T Consensus 316 ~i~~~~~~~~~~ 327 (549)
T COG3507 316 RIGEGHEIRVHQ 327 (549)
T ss_pred cccCCCccccee
Confidence 633 66655554
No 64
>cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins. This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=98.24 E-value=1.1e-05 Score=89.46 Aligned_cols=131 Identities=18% Similarity=0.380 Sum_probs=85.0
Q ss_pred ecCCCceeeeE-EEEeCCEEEEEe------CC-----CCC------CeeEEEEeccC-CcCceeeeeccC---------C
Q 045656 235 LDEDWHLSFPY-VFDYHGQIYMMP------ES-----RAK------GEVRLYRAVNF-PLEWKLEKIIMK---------K 286 (802)
Q Consensus 235 Lde~~HLSyP~-VF~~dG~iYMiP------Es-----s~s------g~l~LYra~~F-P~~We~~~~Ll~---------~ 286 (802)
.+++.+.++|. |+..+|++||.- |. ... ..-+|+.|+.- ...|+.+...+. .
T Consensus 31 ~e~~i~r~dP~~Vi~~~g~Y~mwYs~~~~~~~~~~~~~~~~~~~~w~~y~I~~A~S~Dgv~W~~~g~~L~~~~~g~Wd~~ 110 (349)
T cd08992 31 YEEGVHRRDPSSVIKVDGLYHVWYTKSEGETDGFGTGDPEAKVFPWDKCEIWHATSKDGWTWKEEGPAIGRGEKGAYDDR 110 (349)
T ss_pred cccCeecCCCceEEEECCEEEEEEEecCCcccccccCCccccccCCCceEEEEEECCCCCCceECCccccCCCCCCcccc
Confidence 45677888996 999999999962 11 000 12334444322 347987765332 1
Q ss_pred CccCCEEEEECCEEEEEEeCCCC-CCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCC----------CCcc-------
Q 045656 287 PLVDPFMINHDGQYWLFGSDHSG-FGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKS----------LGAR------- 348 (802)
Q Consensus 287 ~~vDatI~~~dG~wwLF~S~~~~-~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~----------~~aR------- 348 (802)
.+..|.|++++|+|||||+.... ........+.+++|+++.|||+++ .+||+..... ...+
T Consensus 111 ~vwaP~Vi~~dGkyYM~Ysa~~~~~~~~~~~~IGvA~AdSp~GpWtr~-d~Pil~p~~dg~w~~d~~~~~~~~~~g~wD~ 189 (349)
T cd08992 111 SVFTPEVLEHEGTYYLVYQVVKSPYLNRSFESIAMAVADSPYGPWTKS-DEPILSPSNDGIWKGDEDNRFLVKKKGSFDS 189 (349)
T ss_pred ceECcEEEEECCEEEEEEEecccccCCCCcceEEEEEECCcccccccC-CCcEecCCcCCceeeccCceeEeccCCCccc
Confidence 37889999999999999985321 111123478999999999999986 5788753210 0011
Q ss_pred ---cCCccEEECCeEEEEccc
Q 045656 349 ---NGGRPFVYDGNLYRVGQD 366 (802)
Q Consensus 349 ---~GG~vF~~dGkLyRp~Qd 366 (802)
.+..++..+|++|+...-
T Consensus 190 ~~v~~P~v~~~~g~yyL~Y~G 210 (349)
T cd08992 190 HKVHDPCLFPFNGKFYLYYKG 210 (349)
T ss_pred CceECCEEEEECCEEEEEEEc
Confidence 223578889999998744
No 65
>PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure []. ; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A ....
Probab=98.02 E-value=0.00012 Score=79.56 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=108.1
Q ss_pred CCceeeCeeeE-EECCEEEEEEEeeeccCC--CceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCC
Q 045656 184 PSNFVADPFFY-LQGNDLYLFYETKNSITM--QGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESR 260 (802)
Q Consensus 184 ~~~F~ADPFll-~~~g~~ylF~E~~~~~~~--~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss 260 (802)
+..|+-||-.+ ..+|+|+|||--...... .-.-++++|.| +.+|+++++||...
T Consensus 5 ~~gw~NDPnG~~~~~G~yHlFyQ~~P~~~~~g~~~WgHa~S~D-lv~W~~~~~aL~P~---------------------- 61 (308)
T PF00251_consen 5 PKGWMNDPNGLVYYDGKYHLFYQYNPFGPEWGNMHWGHATSKD-LVHWEHLPVALPPD---------------------- 61 (308)
T ss_dssp SSEEEEEEEEEEEETTEEEEEEEEETTSSSS-SBEEEEEEESS-SSSEEEEEEEE-SS----------------------
T ss_pred CCCCeECCccCeEeCCEEEEEeccCCCCcccceeEEEEEECCC-CCCceeCCceEccc----------------------
Confidence 45699999754 799999999976554433 33567899887 89999999887521
Q ss_pred CCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCC-CCee
Q 045656 261 AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKK-NPIY 339 (802)
Q Consensus 261 ~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~-NPI~ 339 (802)
++. -+..+.--+++.++++++||||.... .......+++|.+....|++++. |||+
T Consensus 62 ---------------~~~-----d~~g~~SGs~~~~~~~~~~~YTg~~~---~~~~~q~~A~s~d~~~~w~k~~~~~pvi 118 (308)
T PF00251_consen 62 ---------------EEY-----DADGCFSGSAVVDDDNLVLFYTGNNR---DGKQVQCLAYSTDDGITWTKYPQGNPVI 118 (308)
T ss_dssp ---------------SGG-----GTTEEEEEEEEEETTCEEEEEEEEET---TTEEEEEEEEESSTTSSEEE-TTTCESB
T ss_pred ---------------ccC-----CcCccCcceEEEECCEEEEEEeccCC---CCCeEEEEEEECCCCCceEEcCCCCcEE
Confidence 110 01123445577777789999997522 11224568888777789999994 9999
Q ss_pred eCCCCCCcccC---Ccc-EEECCeEEEEcccCCCCCCceEEEEEeccCCccceEEec
Q 045656 340 NGDKSLGARNG---GRP-FVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE 392 (802)
Q Consensus 340 ~~~~~~~aR~G---G~v-F~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~ 392 (802)
...+.. ...+ ..+ +..+|++|++.-.... -+..+.+++.++|..|+|....
T Consensus 119 ~~~p~~-~~~~~RDP~v~~~~~~~~~m~~g~~~~-~~g~i~~y~S~Dl~~W~~~~~l 173 (308)
T PF00251_consen 119 PEPPPG-DTTDFRDPKVFWREDGRWYMLLGAGRD-GRGCILLYTSDDLIHWEYLGPL 173 (308)
T ss_dssp ESSSTT-SCTSEEEEEEEEECTTEEEEEEEEEET-TEEEEEEEEESSSSSEEEEEEE
T ss_pred EecccC-CCCccccCeEEEecCCEEEEEEecccc-CcceEEEEEcCCcccCceeCcc
Confidence 863211 1111 234 3337888887654433 5567999999999999998776
No 66
>TIGR01322 scrB_fam sucrose-6-phosphate hydrolase.
Probab=98.01 E-value=5e-05 Score=86.79 Aligned_cols=116 Identities=22% Similarity=0.304 Sum_probs=86.2
Q ss_pred CeeeEEECCEEEEEEEeeeccC---CCceEEEEEEeCCCCCceEee-eeecCC-----CceeeeEEEEeCCEEEEEeC--
Q 045656 190 DPFFYLQGNDLYLFYETKNSIT---MQGDIGVAKSVDKGATWQQLG-IALDED-----WHLSFPYVFDYHGQIYMMPE-- 258 (802)
Q Consensus 190 DPFll~~~g~~ylF~E~~~~~~---~~G~I~va~S~D~g~tw~~~g-vvLde~-----~HLSyP~VF~~dG~iYMiPE-- 258 (802)
.|-++..++++++||+...... ..-...+|.|.| +.+|+..+ +||+.+ .|.-.|+||+++|++||+=-
T Consensus 88 sGsav~~~g~~~l~YTg~~~~~~~~~~~~q~lA~S~D-g~~~~k~~~pvi~~~~~~~~~~fRDP~V~~~~g~~~M~~g~~ 166 (445)
T TIGR01322 88 SGSAVDNNGQLTLMYTGNVRDSDWNRESYQCLATMDD-DGHFEKFGIVVIELPPAGYTAHFRDPKVWKHNGHWYMVIGAQ 166 (445)
T ss_pred ECeEEeeCCEEEEEEeccccCCCCCeeEEEEEEEcCC-CCeEEECCCceEeCCCCCCcCcCCCCcEEeECCEEEEEEEEe
Confidence 5788889999999999853211 112245677777 77998876 577542 47789999999999999832
Q ss_pred -CCCCCeeEEEEeccCCcCceeeeeccCC----------CccCCEEEEECCEEEEEEeCC
Q 045656 259 -SRAKGEVRLYRAVNFPLEWKLEKIIMKK----------PLVDPFMINHDGQYWLFGSDH 307 (802)
Q Consensus 259 -ss~sg~l~LYra~~FP~~We~~~~Ll~~----------~~vDatI~~~dG~wwLF~S~~ 307 (802)
....+.+.||++.++ ..|+.+..+... ..+=|-+|+.+|+|+|++|..
T Consensus 167 ~~~~~g~i~ly~S~Dl-~~W~~~g~~~~~~~~~~~~~g~~~ECPdlf~l~~k~vL~~s~~ 225 (445)
T TIGR01322 167 TETEKGSILLYRSKDL-KNWTFVGEILGDGQNGLDDRGYMWECPDLFSLDGQDVLLFSPQ 225 (445)
T ss_pred cCCCceEEEEEECCCc-ccCeEecccccccccccCCccceEECCeEEEECCcEEEEEecc
Confidence 134578999998775 789987764321 256788999999999999864
No 67
>PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family consists of the glycosyl hydrolase 68 family (GH68 from CAZY), including several bacterial levansucrase enzymes, and invertase from Zymomonas. Levansucrase (2.4.1.10 from EC), also known as beta-D-fructofuranosyl transferase, catalyses the conversion of sucrose and (2,6-beta-D-fructosyl)(N) to glucose and (2,6-beta-D-fructosyl)(N+1), where other sugars can also act as fructosyl acceptors. Invertase, or extracellular sucrase (3.2.1.26 from EC), catalyses the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.; GO: 0050053 levansucrase activity, 0009758 carbohydrate utilization; PDB: 2YFR_A 2YFT_A 2YFS_A 1W18_A 3OM7_B 3OM4_C 3OM6_D 3OM5_A 3OM2_A 1PT2_A ....
Probab=97.78 E-value=0.00023 Score=80.67 Aligned_cols=175 Identities=20% Similarity=0.345 Sum_probs=102.5
Q ss_pred CCCCCCCeeccccccCCCCCCceeeCeeeEEE-CCEEEEEEEeeecc---CCCceEE-----EEEEeCCC---CCceEee
Q 045656 165 AWPVANPIMTCASVSSAGFPSNFVADPFFYLQ-GNDLYLFYETKNSI---TMQGDIG-----VAKSVDKG---ATWQQLG 232 (802)
Q Consensus 165 ~w~~~NPVlt~~~v~d~~~~~~F~ADPFll~~-~g~~ylF~E~~~~~---~~~G~I~-----va~S~D~g---~tw~~~g 232 (802)
.|-.+-||+....- +. ...+=|+=--++.. ++++.|||+..... ..+-.|. .+...+++ ..|+.+.
T Consensus 112 ~W~~~G~vf~~g~~-~~-~~s~EWSGSA~l~~~dg~I~LfYTav~~~~~~~~~Q~l~t~~~g~~~~d~~~v~i~g~~~~~ 189 (428)
T PF02435_consen 112 GWKNGGPVFPEGAS-FV-PGSREWSGSATLNNDDGSIQLFYTAVGFSDTPTFRQRLATATLGLIHADDDGVWITGFSNHH 189 (428)
T ss_dssp G-EEEEESS-TTCC-CC-GCEEEEEEEEEESTTTSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEECSTEEEEEEEEEEE
T ss_pred CceECcccCCCCCC-CC-ccCcEecCceEEcCCCCeEEEEEeecccCCCcchhhhhhhHhcCeeecCCCceeEcccccee
Confidence 57777777763222 00 00122232223434 79999999986541 1111322 22223323 2355556
Q ss_pred eeecCC------------CceeeeEEEEe--CCEEEEEeCC---------------------------C--------CCC
Q 045656 233 IALDED------------WHLSFPYVFDY--HGQIYMMPES---------------------------R--------AKG 263 (802)
Q Consensus 233 vvLde~------------~HLSyP~VF~~--dG~iYMiPEs---------------------------s--------~sg 263 (802)
.+++-+ +.+=.|++|++ +|+.||+-|. . +.+
T Consensus 190 ~lfe~DG~~Yqt~~Q~~~~afRDP~~f~DP~~G~~YLvFEgNtg~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~A~~~ng 269 (428)
T PF02435_consen 190 ELFEGDGKHYQTYEQNPGYAFRDPHVFEDPEDGKRYLVFEGNTGGERNWANYGGDDLGNVPGDPKLENNDNKSGASYANG 269 (428)
T ss_dssp EEES--SSSB--HHHHHH---EEEEEEEETTTTEEEEEEEEEBSTTSBGGGT-SHHHHHHHHHHHHHHSCCHHHHHH-EE
T ss_pred EeeccchhhhhChhhcCCccccCCeeEECCCCCcEEEEEecccCCCCCccccCccccccccccccccccccccccceecc
Confidence 667554 44778999999 9999999663 1 356
Q ss_pred eeEEEEeccCC-cCceeeeeccC-----CCccCCEEEEECCEEEEEEeCCCCC---CCCCCCcEEEEEEcC-CCCCCeeC
Q 045656 264 EVRLYRAVNFP-LEWKLEKIIMK-----KPLVDPFMINHDGQYWLFGSDHSGF---GTTQNGQLEIWYSSS-PFGPWKPH 333 (802)
Q Consensus 264 ~l~LYra~~FP-~~We~~~~Ll~-----~~~vDatI~~~dG~wwLF~S~~~~~---g~~~n~~L~i~~AdS-plGPW~~h 333 (802)
.|=|-++.+-. ..||.-+-|++ ++++=|-|++++|+||||++.+... +....+.+..+++++ +.|||+|-
T Consensus 270 ~iGi~~~~~~~~~~w~~~~PL~~a~~v~de~ERP~iv~~~gkyYLFt~s~~~~~a~g~~g~d~~yg~~~~~~L~g~y~PL 349 (428)
T PF02435_consen 270 AIGIAKLTNDDGTVWELLPPLLSANGVNDELERPHIVFMNGKYYLFTISHLSTFADGIVGPDGVYGFVVSDSLRGPYKPL 349 (428)
T ss_dssp EEEEEEESTTTTSEEEEEEEEEEETTTBS-EEEEEEEEETTEEEEEEEEEGGGBSTTHHTTSEEEEEEEESSTTS--EEG
T ss_pred eeeeEEecCCCCCccEEeCcceecccccccccCCcEEEECCEEEEEEEeccccccCCccCCCeEEEEEECccccCCceec
Confidence 67777776543 56998666554 4689999999999999999653221 222244688888877 99999987
Q ss_pred CCCCeeeC
Q 045656 334 KKNPIYNG 341 (802)
Q Consensus 334 p~NPI~~~ 341 (802)
-.+=++-.
T Consensus 350 NgsGlVl~ 357 (428)
T PF02435_consen 350 NGSGLVLG 357 (428)
T ss_dssp CCTSEEEE
T ss_pred CCCceEec
Confidence 76665554
No 68
>PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure []. ; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A ....
Probab=97.70 E-value=0.00054 Score=74.57 Aligned_cols=139 Identities=20% Similarity=0.297 Sum_probs=98.3
Q ss_pred eeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEe---eeeecC-----CCceeeeEE-EEeCCEEEEEe--CC
Q 045656 191 PFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQL---GIALDE-----DWHLSFPYV-FDYHGQIYMMP--ES 259 (802)
Q Consensus 191 PFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~---gvvLde-----~~HLSyP~V-F~~dG~iYMiP--Es 259 (802)
.-++..++++++||+...... .-.+.+|.|.|++.+|+.. .+||+. ..|+-.|+| +..++++||+= ..
T Consensus 72 Gs~~~~~~~~~~~YTg~~~~~-~~~q~~A~s~d~~~~w~k~~~~~pvi~~~p~~~~~~~RDP~v~~~~~~~~~m~~g~~~ 150 (308)
T PF00251_consen 72 GSAVVDDDNLVLFYTGNNRDG-KQVQCLAYSTDDGITWTKYPQGNPVIPEPPPGDTTDFRDPKVFWREDGRWYMLLGAGR 150 (308)
T ss_dssp EEEEEETTCEEEEEEEEETTT-EEEEEEEEESSTTSSEEE-TTTCESBESSSTTSCTSEEEEEEEEECTTEEEEEEEEEE
T ss_pred ceEEEECCEEEEEEeccCCCC-CeEEEEEEECCCCCceEEcCCCCcEEEecccCCCCccccCeEEEecCCEEEEEEeccc
Confidence 556678889999999987643 5677788887889999983 577764 468999999 77789999993 22
Q ss_pred CCCCeeEEEEeccCCcCceeeeeccCC------CccCCEEEEECCE--------EEEEEeCCCCCCCCCCCcEEEEEEcC
Q 045656 260 RAKGEVRLYRAVNFPLEWKLEKIIMKK------PLVDPFMINHDGQ--------YWLFGSDHSGFGTTQNGQLEIWYSSS 325 (802)
Q Consensus 260 s~sg~l~LYra~~FP~~We~~~~Ll~~------~~vDatI~~~dG~--------wwLF~S~~~~~g~~~n~~L~i~~AdS 325 (802)
...+.+.||++.++ ..|+....+... ..+=|.+|+.+++ |+|++|... .. .....-.+++.+-
T Consensus 151 ~~~g~i~~y~S~Dl-~~W~~~~~l~~~~~~~g~~~ECPdlf~l~~~~~~~~~~~~vl~~s~~g-~~-~~~~~~~Y~vG~~ 227 (308)
T PF00251_consen 151 DGRGCILLYTSDDL-IHWEYLGPLFIPGDNGGGMWECPDLFPLDGKGDGTGKWVWVLIFSPQG-IE-DNGHGTYYMVGDF 227 (308)
T ss_dssp TTEEEEEEEEESSS-SSEEEEEEESEEETTTSSEEEEEEEEEEEBTTSSSEEEEEEEEEEEES-TT-TTTTEEEEEEEEE
T ss_pred cCcceEEEEEcCCc-ccCceeCcccccccccccccccceEEEECCcccccceEEEEEEecccc-cc-cccccceEEeEEe
Confidence 26789999999887 789998775432 3678888988766 788887631 11 1122333344432
Q ss_pred --CCCCCeeC
Q 045656 326 --PFGPWKPH 333 (802)
Q Consensus 326 --plGPW~~h 333 (802)
.-+.|++.
T Consensus 228 d~~~~~f~~~ 237 (308)
T PF00251_consen 228 DFDGGTFTPD 237 (308)
T ss_dssp ETTTTEEEES
T ss_pred cCCCCeeeee
Confidence 45567655
No 69
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety. On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B.
Probab=97.68 E-value=0.0019 Score=70.95 Aligned_cols=188 Identities=21% Similarity=0.314 Sum_probs=111.3
Q ss_pred eeCeeeEEECCE--EEEEEEeeeccCCCceEEEEEEeCCCCCceEee-eee--cCC---CceeeeEEEEeCCEEEEEeC-
Q 045656 188 VADPFFYLQGND--LYLFYETKNSITMQGDIGVAKSVDKGATWQQLG-IAL--DED---WHLSFPYVFDYHGQIYMMPE- 258 (802)
Q Consensus 188 ~ADPFll~~~g~--~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~g-vvL--de~---~HLSyP~VF~~dG~iYMiPE- 258 (802)
+=-|-+++.+|+ ++++|-..........|++|+|.| |.+|+... ++| +.+ +-.=.|-|.+.+|++||.-.
T Consensus 32 vfNpgai~~~~~~R~~l~yr~~~~~~~~~~iglA~S~D-Gi~f~~~~~pil~P~~~~e~~GvEDPRVt~i~d~yymtYta 110 (312)
T PF04041_consen 32 VFNPGAIVFDGGLRVYLLYRAYGSDIGSSRIGLARSDD-GIHFERDPEPILYPDTDYEEWGVEDPRVTKIDDTYYMTYTA 110 (312)
T ss_dssp EEEEEEEEETTE--EEEEEEEEESSSSEEEEEEEEESS-SSS-EE-SS-SBEE-SSTTHTEEEEEEEEEETTEEEEEEEE
T ss_pred EEcCcEEEECCeeEEEEEEEeECCCCceeEEEEEEccC-CcCceECCCCEEccCCCCcccCccceeEEEECCEEEEEEEE
Confidence 445888878887 788887765544445899999988 78897764 334 222 34677999999999999953
Q ss_pred -CCCCCeeEEEEeccCCcCceeeeeccCCC----------ccCCEEE--EECCEEEEEEeCCCCCCCCCCCcEEEEEEcC
Q 045656 259 -SRAKGEVRLYRAVNFPLEWKLEKIIMKKP----------LVDPFMI--NHDGQYWLFGSDHSGFGTTQNGQLEIWYSSS 325 (802)
Q Consensus 259 -ss~sg~l~LYra~~FP~~We~~~~Ll~~~----------~vDatI~--~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdS 325 (802)
+...-++.|-...+| ..|+.....+... .-|.++| +.+|+|+||.- ...+.+++|++
T Consensus 111 ~~~~~~~~~la~s~D~-~~~~r~g~~~~~~~~~~~~~~~~~kd~~lfp~ki~Gky~m~~r---------~~~i~la~S~D 180 (312)
T PF04041_consen 111 YSGKGPRIGLATSKDF-KHWERHGKIFPPFNGNEDYRDFWSKDGALFPEKINGKYAMLHR---------DPSIWLAYSPD 180 (312)
T ss_dssp EESSSEEEEEEEESSS-SSEEEEECTTTTTCTS-EEEEEEEECCEEEESEETTEEEEEEE---------SSSBEEEEESS
T ss_pred ecCCCcccceEEccch-HhhEEeccccCcccccccccccccCceEEEEEEECCEEEEEEC---------CCCEEEEecCC
Confidence 334456777777777 6788766433211 1445555 44999999994 33677777765
Q ss_pred CCCCCeeCCCCCeeeCCC----CCCcccCCccEEE-CCeEEEEcc---cCCCCCCceEEEEEeccCCccceEE
Q 045656 326 PFGPWKPHKKNPIYNGDK----SLGARNGGRPFVY-DGNLYRVGQ---DCAESYGRRVRTFKVEILTKNEYKE 390 (802)
Q Consensus 326 plGPW~~hp~NPI~~~~~----~~~aR~GG~vF~~-dGkLyRp~Q---dC~~~YG~~L~l~~It~Lt~~~y~E 390 (802)
+. .|+.+.. ++....+ ...-..|..++.. +|-|...-. +-...|--++.|+..+ +|++-.-
T Consensus 181 l~-~W~~~~~-~~~~~~~~~~d~~kiG~g~pPi~t~~GwL~iyHG~~~~~~~~Y~~g~~LlD~~--dP~kvi~ 249 (312)
T PF04041_consen 181 LI-HWGNHRE-PLLSPRPGWWDSSKIGAGPPPIKTDEGWLLIYHGNVTDEGRVYRLGAALLDLD--DPTKVIA 249 (312)
T ss_dssp SS-SEEEEBE-TSB--STTSSCSSEEEE-S-EEEETTEEEEEEEEEESSTTTEEEEEEEEE-SS--STTSEEE
T ss_pred cc-ccccccc-ccccCCCCcChhhcccCCCCceEecCCEEEEEeccccCCCCEEEEEEEEEcCC--CCcceEE
Confidence 54 5987753 3333211 1112344566766 564444442 2234665555555443 4444333
No 70
>smart00640 Glyco_32 Glycosyl hydrolases family 32.
Probab=97.63 E-value=0.001 Score=76.11 Aligned_cols=118 Identities=25% Similarity=0.321 Sum_probs=86.3
Q ss_pred eCeeeEEECCEEEEEEEeeecc-C----CCceEEEEEEeCCCCCceEe--eeeecCC-----CceeeeEEEEeCC-EEEE
Q 045656 189 ADPFFYLQGNDLYLFYETKNSI-T----MQGDIGVAKSVDKGATWQQL--GIALDED-----WHLSFPYVFDYHG-QIYM 255 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~-~----~~G~I~va~S~D~g~tw~~~--gvvLde~-----~HLSyP~VF~~dG-~iYM 255 (802)
-++-+++.++++++||+..... + .+-.+.++.+.+++.+|+.. ++|+..+ .|+-.|+||.+++ ++||
T Consensus 70 ~sGsav~~~~~~~~~YTg~~~~~~~~~~~~~~~~~~ass~d~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~~~~~~~m 149 (437)
T smart00640 70 FSGSAVIDPGNLSLLYTGNVAIDTNVQVQRQAQQLAASDDLGGTWTKYPGNPVLVPPPGIGTEHFRDPKVFWYDGDKWYM 149 (437)
T ss_pred EEEEEEECCCceEEEEcCCcccccccCcccEEEEEEEECCCCCeeEECCCCcEEeCCCCCCCCCcCCCCccEECCCEEEE
Confidence 3477788888999999985311 1 12223355566779999987 5777652 4778899998885 9999
Q ss_pred EeC---CCCCCeeEEEEeccCCcCceeeeeccC-------CCccCCEEEEECC-----EEEEEEeCC
Q 045656 256 MPE---SRAKGEVRLYRAVNFPLEWKLEKIIMK-------KPLVDPFMINHDG-----QYWLFGSDH 307 (802)
Q Consensus 256 iPE---ss~sg~l~LYra~~FP~~We~~~~Ll~-------~~~vDatI~~~dG-----~wwLF~S~~ 307 (802)
+=- ....|.+.||+..++ ..|+....+.. ...+=|-+|+.++ +|+|++|..
T Consensus 150 ~~g~~~~~~~G~i~ly~S~Dl-~~W~~~~~~~~~~~~~~g~~wECPdlf~l~~~~~~~~~vLi~s~~ 215 (437)
T smart00640 150 VIGASDEDKTGIALLYRSTDL-KNWTLLGELLHSGVGDTGGMWECPDLFPLPGDGDTSKHVLKVSPQ 215 (437)
T ss_pred EEEEEecCCCeEEEEEECCCc-ccCeECCcccccCCCCccceEECCcEEEeCCCCCceeEEEEECcC
Confidence 932 123678999999886 68998876543 1357799999988 999999874
No 71
>COG3940 Predicted beta-xylosidase [General function prediction only]
Probab=97.60 E-value=0.0065 Score=63.24 Aligned_cols=236 Identities=14% Similarity=0.181 Sum_probs=124.5
Q ss_pred CCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecC------CCcee
Q 045656 169 ANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDE------DWHLS 242 (802)
Q Consensus 169 ~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde------~~HLS 242 (802)
.||.|. --||||++.+++-+|-|--..... .+-+|.-+.+.+ |..-....+|-.. .--.|
T Consensus 6 ~npfie------------qradp~iykh~dg~yyftasvpey-drie~rraktle-glr~aepvvvwrk~esgpms~liw 71 (324)
T COG3940 6 LNPFIE------------QRADPMIYKHNDGYYYFTASVPEY-DRIEVRRAKTLE-GLRNAEPVVVWRKHESGPMSNLIW 71 (324)
T ss_pred CChhhh------------hccCceEEEccCccEEEEeccCcc-ceeeeeeccchh-hhhccCceeEEeccCCCchhhccc
Confidence 488877 349999999887777665543322 223444444444 2211111122221 13378
Q ss_pred eeEEEEeCCEEEEEeCC-----CC----CCeeEEEEec-cCC--cCceeee---eccCCCccCCEEEEECCEEEEEEeCC
Q 045656 243 FPYVFDYHGQIYMMPES-----RA----KGEVRLYRAV-NFP--LEWKLEK---IIMKKPLVDPFMINHDGQYWLFGSDH 307 (802)
Q Consensus 243 yP~VF~~dG~iYMiPEs-----s~----sg~l~LYra~-~FP--~~We~~~---~Ll~~~~vDatI~~~dG~wwLF~S~~ 307 (802)
.|.|-..+|++|++-.. .+ +.+.-..++. .-| .+|.... +-.+.=..|||.|+|+|+-|+.....
T Consensus 72 apeih~ingkwyiyfaaa~ta~~k~g~f~hrmfvlene~anpltg~w~ekgqikt~wesfsldattfeh~gk~yyvwaqk 151 (324)
T COG3940 72 APEIHFINGKWYIYFAAAPTANIKDGTFNHRMFVLENENANPLTGNWVEKGQIKTAWESFSLDATTFEHNGKLYYVWAQK 151 (324)
T ss_pred ccceeEEcceEEEEEeecCcccccccccceeEEEEecCCCCCCcccceecceeccchhcceeeeeeeeeCCEEEEEEecc
Confidence 99999999999999321 11 1222233332 223 3575321 11222378999999999855444332
Q ss_pred CCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCC-------CCcccCCccEEECCeEEEEcccC--CCCCCceEEEE
Q 045656 308 SGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKS-------LGARNGGRPFVYDGNLYRVGQDC--AESYGRRVRTF 378 (802)
Q Consensus 308 ~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~-------~~aR~GG~vF~~dGkLyRp~QdC--~~~YG~~L~l~ 378 (802)
......+.+ ||.|+ ...||+-. ..||.-..+. .---.|..+++.+||++.-.--+ ...|.-+|--.
T Consensus 152 -dp~i~gnsn--iyiae-menpwtik-gepvmlskpe~dwe~~gfwvnegpav~k~ngkifi~ysasatd~nycmgllwa 226 (324)
T COG3940 152 -DPNIKGNSN--IYIAE-MENPWTIK-GEPVMLSKPELDWEIKGFWVNEGPAVLKKNGKIFITYSASATDVNYCMGLLWA 226 (324)
T ss_pred -CCCccCCcc--eEEEe-ccCCceec-CceEEecCCCcccEEEEEEecCCceEEEECCEEEEEEeccccccceeeeeeee
Confidence 122222334 55555 67899854 4677654321 11235677888899998854443 24677766544
Q ss_pred Eec-c-CCccceEEec----cccCCC-CCCccccccccCCCCC-eEEEEeCcc
Q 045656 379 KVE-I-LTKNEYKELE----GRNAWN-GARYHHLDAQQLSSGE-WIAVMDGDR 423 (802)
Q Consensus 379 ~It-~-Lt~~~y~E~~----~~~~w~-~~~~Hhld~~~l~~g~-~i~vvDG~r 423 (802)
+.. + |++.+...++ .-..-| +.|+-|-.+.+-++|+ ...|+-+..
T Consensus 227 nen~dlldpaswtksptpvf~ts~en~qygpghnsftvtedgkhdvlvyharn 279 (324)
T COG3940 227 NENSDLLDPASWTKSPTPVFKTSMENHQYGPGHNSFTVTEDGKHDVLVYHARN 279 (324)
T ss_pred cccCCcCCchhcccCCCcceeeehhccccCCCCCceEecCCCcccEEEEeccc
Confidence 433 2 3444333332 111111 2344454555555664 566665544
No 72
>cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase. Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n
Probab=97.41 E-value=0.017 Score=64.62 Aligned_cols=176 Identities=16% Similarity=0.202 Sum_probs=107.9
Q ss_pred CCCceEEEEEEeCCCCCceEeeeeecCC----CceeeeEEEEe-CCEEEEEeCCC-------CCCeeEEEEeccCC----
Q 045656 211 TMQGDIGVAKSVDKGATWQQLGIALDED----WHLSFPYVFDY-HGQIYMMPESR-------AKGEVRLYRAVNFP---- 274 (802)
Q Consensus 211 ~~~G~I~va~S~D~g~tw~~~gvvLde~----~HLSyP~VF~~-dG~iYMiPEss-------~sg~l~LYra~~FP---- 274 (802)
...-+|+++.|.| +.+|++.+.++... ...+-+-++.. ||+++|+--.. ..-.++|-+++.--
T Consensus 38 h~~~~wgh~~S~d-lv~W~~~~~l~p~~~~d~~g~wSGsa~~~~dg~~~lfYTg~~~~~~~~~~~~Q~ia~a~~~~~~v~ 116 (349)
T cd08997 38 HGDARIGYFYSRA-GGNWIDGGKVFPDGLSPGSREWSGSATLDDDGTVQLFYTAVGRKGEPQPTFTQRLALARGTLSVVN 116 (349)
T ss_pred cCceEEEEEEeCC-CCcccCCCccCCCCcccCCCeEcceEEEeCCCeEEEEEeccccCCCCCCCceEEEEEEECCCcceE
Confidence 4567899999988 99999977766443 34788888755 59999994221 12333444443211
Q ss_pred -cCceeeeeccC---------------------CCccCCEEEEEC--CEEEEEEeCCCCCC-------------------
Q 045656 275 -LEWKLEKIIMK---------------------KPLVDPFMINHD--GQYWLFGSDHSGFG------------------- 311 (802)
Q Consensus 275 -~~We~~~~Ll~---------------------~~~vDatI~~~d--G~wwLF~S~~~~~g------------------- 311 (802)
..|+.+..+++ ...=||-+|+.+ |+|||+...+....
T Consensus 117 ~~~~~~~~~lf~~Dg~~Yqt~~q~~~~~~~~~~~~fRDP~vf~d~~~G~~ymvfeant~~~~g~~~~~~~~~~~~~~~~~ 196 (349)
T cd08997 117 LSGFEDHHELFEPDGDLYQTDQQYEGTGAQGDIKAFRDPFVFEDPETGKTYLLFEGNTAGERGSQECTEAELGRVLPDTV 196 (349)
T ss_pred ecccCccceeeeCCCceEEeccccccccccCccCcccCCEEEecCCCCcEEEEEEeccCCCCCccccccccccccccccc
Confidence 23433322221 136799999997 99999987653322
Q ss_pred -----CCCCCcEEEEEEcCC-CCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCCCCc------eEEEEE
Q 045656 312 -----TTQNGQLEIWYSSSP-FGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGR------RVRTFK 379 (802)
Q Consensus 312 -----~~~n~~L~i~~AdSp-lGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~------~L~l~~ 379 (802)
...++.++++.+++. +-+|+-.+ |++....-..-.....+|+.+|++|++.=.+...+-. ++..+-
T Consensus 197 ~~~~a~~~~G~IGia~~~s~dl~~W~~~~--PL~~a~~v~d~~E~P~v~~~~gk~yL~~s~~~~~~~~~~~~~~~~~g~v 274 (349)
T cd08997 197 KPDGASYQNGNVGIAVAKNDDLTEWKLLP--PLLEANGVNDELERPHVVFHNGKYYLFTISHRSTFAPGLSGPDGLYGFV 274 (349)
T ss_pred cccccccccceEEEEEecCCCCCCcEEcC--ccccCCCcCCceEcceEEEECCEEEEEEeCCcCccccccCCCCcEEEEE
Confidence 112456788887765 66799766 7764321122377899999999999985422222221 355555
Q ss_pred eccCCccceEE
Q 045656 380 VEILTKNEYKE 390 (802)
Q Consensus 380 It~Lt~~~y~E 390 (802)
.+.|.- -|++
T Consensus 275 sdsl~G-P~~~ 284 (349)
T cd08997 275 SDSLRG-PYKP 284 (349)
T ss_pred eCCCCC-CCcc
Confidence 555542 2444
No 73
>COG3940 Predicted beta-xylosidase [General function prediction only]
Probab=97.38 E-value=0.01 Score=61.78 Aligned_cols=169 Identities=18% Similarity=0.434 Sum_probs=102.8
Q ss_pred CCceeeCeeeEEECCEEEEEEEeeecc-C----CCceEEEEEEeCC---CCCceEeeeeecCCCc-eee-eEEEEeCCEE
Q 045656 184 PSNFVADPFFYLQGNDLYLFYETKNSI-T----MQGDIGVAKSVDK---GATWQQLGIALDEDWH-LSF-PYVFDYHGQI 253 (802)
Q Consensus 184 ~~~F~ADPFll~~~g~~ylF~E~~~~~-~----~~G~I~va~S~D~---g~tw~~~gvvLde~~H-LSy-P~VF~~dG~i 253 (802)
....+| |.+-.-+|+||+||.+-... + -+-+.-|++-.++ ...|...|.+ ..+|. +|- --.|+|+|+.
T Consensus 67 s~liwa-peih~ingkwyiyfaaa~ta~~k~g~f~hrmfvlene~anpltg~w~ekgqi-kt~wesfsldattfeh~gk~ 144 (324)
T COG3940 67 SNLIWA-PEIHFINGKWYIYFAAAPTANIKDGTFNHRMFVLENENANPLTGNWVEKGQI-KTAWESFSLDATTFEHNGKL 144 (324)
T ss_pred hhcccc-cceeEEcceEEEEEeecCcccccccccceeEEEEecCCCCCCcccceeccee-ccchhcceeeeeeeeeCCEE
Confidence 334566 88888899999999863322 1 1234445553332 2568888753 33333 222 3479999987
Q ss_pred EEE-e--CCCCCCeeEEEEeccCCcCcee--eeeccCC-----------CccCCEEEEECCEEEEEEeCCCCCCCCCCCc
Q 045656 254 YMM-P--ESRAKGEVRLYRAVNFPLEWKL--EKIIMKK-----------PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQ 317 (802)
Q Consensus 254 YMi-P--Ess~sg~l~LYra~~FP~~We~--~~~Ll~~-----------~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~ 317 (802)
|.+ + ..+-.|.-.||-|.- -..|.. +++++++ ..++|.+++++|+..+-||..+ +..++-
T Consensus 145 yyvwaqkdp~i~gnsniyiaem-enpwtikgepvmlskpe~dwe~~gfwvnegpav~k~ngkifi~ysasa---td~nyc 220 (324)
T COG3940 145 YYVWAQKDPNIKGNSNIYIAEM-ENPWTIKGEPVMLSKPELDWEIKGFWVNEGPAVLKKNGKIFITYSASA---TDVNYC 220 (324)
T ss_pred EEEEeccCCCccCCcceEEEec-cCCceecCceEEecCCCcccEEEEEEecCCceEEEECCEEEEEEeccc---ccccee
Confidence 777 4 234446666776642 234543 4554432 3689999999999999998753 233444
Q ss_pred EEEEEE---cCCCCC--CeeCCCCCeeeCC-CCCCcccCCccEEE--CCe
Q 045656 318 LEIWYS---SSPFGP--WKPHKKNPIYNGD-KSLGARNGGRPFVY--DGN 359 (802)
Q Consensus 318 L~i~~A---dSplGP--W~~hp~NPI~~~~-~~~~aR~GG~vF~~--dGk 359 (802)
.++-++ ++++.| |++.| .||.+.. +...-.||.+.|.. |||
T Consensus 221 mgllwanen~dlldpaswtksp-tpvf~ts~en~qygpghnsftvtedgk 269 (324)
T COG3940 221 MGLLWANENSDLLDPASWTKSP-TPVFKTSMENHQYGPGHNSFTVTEDGK 269 (324)
T ss_pred eeeeeecccCCcCCchhcccCC-CcceeeehhccccCCCCCceEecCCCc
Confidence 454444 456665 99887 6888753 12234577888865 564
No 74
>COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]
Probab=97.22 E-value=0.0072 Score=70.10 Aligned_cols=164 Identities=19% Similarity=0.182 Sum_probs=108.1
Q ss_pred CCceeeCeeeE-EECCEEEEEEEeeeccCC--CceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCC
Q 045656 184 PSNFVADPFFY-LQGNDLYLFYETKNSITM--QGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESR 260 (802)
Q Consensus 184 ~~~F~ADPFll-~~~g~~ylF~E~~~~~~~--~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss 260 (802)
+..|+-||=.+ ..+|+|+|||--..+... .=+=++++|.| ..+|+...++|-
T Consensus 37 ~~G~mNDPNG~iy~~G~yHlFYQ~~P~~~~~g~~~WgHa~S~D-lv~W~~~piaL~------------------------ 91 (486)
T COG1621 37 PTGWLNDPNGLIYFDGKYHLFYQYNPFGAAHGPKHWGHAVSKD-LVHWEHLPIALA------------------------ 91 (486)
T ss_pred CcCceECCCceeEECCEEEEEEecCCCCCCCCCceeeeeccCC-cccceECCceec------------------------
Confidence 46799999985 889999999987664433 33567888866 999999888774
Q ss_pred CCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCC-cEEEEEEcCCCCCCeeCCCCCee
Q 045656 261 AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNG-QLEIWYSSSPFGPWKPHKKNPIY 339 (802)
Q Consensus 261 ~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~-~L~i~~AdSplGPW~~hp~NPI~ 339 (802)
|..|- -+..+---+.+..+|.-+||||.+-..-..... ...+++++. .+.+++.++|||+
T Consensus 92 -------------Pd~~~-----d~~g~ySGSAV~~~~~l~lfytg~v~~~~~~r~~~Q~iA~s~d-g~~f~K~~~~~i~ 152 (486)
T COG1621 92 -------------PDDDY-----DSHGCYSGSAVVDDGNLSLFYTGNVRDSNGIRQQTQCIAYSED-GGTFEKYSGNPII 152 (486)
T ss_pred -------------CCCcc-----ccCCceeeeEEEeCCcEEEEEccceeccCCcceeEEEEEEEcC-CCceEeccCCcee
Confidence 23331 011222334556667777788764321111111 345888877 6678777788888
Q ss_pred eCCCC--CCcccCCc-cEEECCeEEEEcccCCCCCCceEEEEEeccCCccceEEec
Q 045656 340 NGDKS--LGARNGGR-PFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE 392 (802)
Q Consensus 340 ~~~~~--~~aR~GG~-vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~ 392 (802)
..+.. ...| -.+ ++..+|+.|+..---...|...|.+|+.++|..|+|.-..
T Consensus 153 ~~p~~~t~hFR-DPKv~w~~~~~~~~mlgAq~~~~~g~i~lY~S~DL~~W~~~g~~ 207 (486)
T COG1621 153 DQPEGYTPHFR-DPKVVWDEGGKWWMMLGAQGEDLKGTILLYESDDLKNWQFTGEF 207 (486)
T ss_pred cCCCcccccCC-CCcccccCCCcEEEEEEEecCCCCceEEEEeCCCccCcEEEEee
Confidence 75421 0111 145 3455888888766556788899999999999999986554
No 75
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety. On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B.
Probab=97.06 E-value=0.04 Score=60.75 Aligned_cols=143 Identities=19% Similarity=0.232 Sum_probs=94.9
Q ss_pred CeEEEEEecCCCCccCccccccccCCCCCCCCCCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCce
Q 045656 136 SWSIGVFFGNSPFSLKPIETANVWRDDSAAWPVANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGD 215 (802)
Q Consensus 136 ~Wsig~~~g~~p~~l~p~~~~~~~~~~~~~w~~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~ 215 (802)
+=.||++...+.... .+. ..||+...+--+. .-..||=++..+++|||+|++++.. ...
T Consensus 59 ~~~iglA~S~DGi~f------~~~---------~~pil~P~~~~e~----~GvEDPRVt~i~d~yymtYta~~~~--~~~ 117 (312)
T PF04041_consen 59 SSRIGLARSDDGIHF------ERD---------PEPILYPDTDYEE----WGVEDPRVTKIDDTYYMTYTAYSGK--GPR 117 (312)
T ss_dssp EEEEEEEEESSSSS-------EE----------SS-SBEE-SSTTH----TEEEEEEEEEETTEEEEEEEEEESS--SEE
T ss_pred eeEEEEEEccCCcCc------eEC---------CCCEEccCCCCcc----cCccceeEEEECCEEEEEEEEecCC--Ccc
Confidence 447999999886442 121 4788776543332 3489999999999999999998764 467
Q ss_pred EEEEEEeCCCCCceEeeeeecCCC------------ceeeeEEEEeCCEEEEEeCCCCCCeeEEEEeccCCcCceeeee-
Q 045656 216 IGVAKSVDKGATWQQLGIALDEDW------------HLSFPYVFDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKI- 282 (802)
Q Consensus 216 I~va~S~D~g~tw~~~gvvLde~~------------HLSyP~VF~~dG~iYMiPEss~sg~l~LYra~~FP~~We~~~~- 282 (802)
+++++|.| ..+|+.++.++.... -.-||. +.+|+++|+-. ...+.|-.+.+. ..|+.+..
T Consensus 118 ~~la~s~D-~~~~~r~g~~~~~~~~~~~~~~~~~kd~~lfp~--ki~Gky~m~~r---~~~i~la~S~Dl-~~W~~~~~~ 190 (312)
T PF04041_consen 118 IGLATSKD-FKHWERHGKIFPPFNGNEDYRDFWSKDGALFPE--KINGKYAMLHR---DPSIWLAYSPDL-IHWGNHREP 190 (312)
T ss_dssp EEEEEESS-SSSEEEEECTTTTTCTS-EEEEEEEECCEEEES--EETTEEEEEEE---SSSBEEEEESSS-SSEEEEBET
T ss_pred cceEEccc-hHhhEEeccccCcccccccccccccCceEEEEE--EECCEEEEEEC---CCCEEEEecCCc-ccccccccc
Confidence 88899877 899999986554321 244454 44899999977 556666666444 46887654
Q ss_pred ccCC--------C-ccCCEEEEECCEEEEEEeC
Q 045656 283 IMKK--------P-LVDPFMINHDGQYWLFGSD 306 (802)
Q Consensus 283 Ll~~--------~-~vDatI~~~dG~wwLF~S~ 306 (802)
++.. . =..+..++-+.-|.++|..
T Consensus 191 ~~~~~~~~~d~~kiG~g~pPi~t~~GwL~iyHG 223 (312)
T PF04041_consen 191 LLSPRPGWWDSSKIGAGPPPIKTDEGWLLIYHG 223 (312)
T ss_dssp SB--STTSSCSSEEEE-S-EEEETTEEEEEEEE
T ss_pred cccCCCCcChhhcccCCCCceEecCCEEEEEec
Confidence 3321 1 2446778886669989963
No 76
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=96.49 E-value=0.23 Score=52.23 Aligned_cols=189 Identities=19% Similarity=0.176 Sum_probs=112.7
Q ss_pred ceeeCeeeEE-ECCEEEEEEEeeeccC--CCceEEEEEEeCCCCCceEeeeeecC-CCceee----eEEEEeCCEEEEE-
Q 045656 186 NFVADPFFYL-QGNDLYLFYETKNSIT--MQGDIGVAKSVDKGATWQQLGIALDE-DWHLSF----PYVFDYHGQIYMM- 256 (802)
Q Consensus 186 ~F~ADPFll~-~~g~~ylF~E~~~~~~--~~G~I~va~S~D~g~tw~~~gvvLde-~~HLSy----P~VF~~dG~iYMi- 256 (802)
.-+.||.++. .+|+++||++...... ....|....|.|+|.+|.....+-.. ...... |-|.-.+|.+++.
T Consensus 46 ~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~ 125 (275)
T PF13088_consen 46 RRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPY 125 (275)
T ss_dssp CEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEE
T ss_pred CcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEE
Confidence 4668999985 5999999995443322 23455568899999999987643322 222222 2234457877775
Q ss_pred -eCCCCCCeeEEEEeccCCcCceeeeeccCC-CccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeC
Q 045656 257 -PESRAKGEVRLYRAVNFPLEWKLEKIIMKK-PLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPH 333 (802)
Q Consensus 257 -PEss~sg~l~LYra~~FP~~We~~~~Ll~~-~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~h 333 (802)
.|........++...+.-..|+....+... ...-+++++. +|+.++++-.. .+..+.+++|.+--..|.+
T Consensus 126 ~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~------~~~~~~~~~S~D~G~TWs~- 198 (275)
T PF13088_consen 126 YHESGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE------GNDDIYISRSTDGGRTWSP- 198 (275)
T ss_dssp EEESSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC------SSTEEEEEEESSTTSS-EE-
T ss_pred eeccccCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc------CCCcEEEEEECCCCCcCCC-
Confidence 354556778888888887889876654343 4667777765 88999988541 1225666666665567986
Q ss_pred CCCCeeeCCCCCCcccCCcc-EEE-CCeEEEEcccCCCCCCceEEEEEeccCCccceEE
Q 045656 334 KKNPIYNGDKSLGARNGGRP-FVY-DGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKE 390 (802)
Q Consensus 334 p~NPI~~~~~~~~aR~GG~v-F~~-dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E 390 (802)
|...+.+ ...++.. +.. +|+++.....- .-...|.|+...+ ...++++
T Consensus 199 ---~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~--~~r~~l~l~~S~D-~g~tW~~ 248 (275)
T PF13088_consen 199 ---PQPTNLP---NPNSSISLVRLSDGRLLLVYNNP--DGRSNLSLYVSED-GGKTWSR 248 (275)
T ss_dssp ---EEEEECS---SCCEEEEEEECTTSEEEEEEECS--STSEEEEEEEECT-TCEEEEE
T ss_pred ---ceecccC---cccCCceEEEcCCCCEEEEEECC--CCCCceEEEEEeC-CCCcCCc
Confidence 2211111 1222322 332 78998888732 2256677766543 2334443
No 77
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=96.38 E-value=0.38 Score=52.73 Aligned_cols=184 Identities=18% Similarity=0.204 Sum_probs=113.9
Q ss_pred eeeCeeeEEECCEEEEEEEeeecc-CC---CceEEEEEEeCCCCCceEeeeeecCC---CceeeeEEEEeC-CEEEEE--
Q 045656 187 FVADPFFYLQGNDLYLFYETKNSI-TM---QGDIGVAKSVDKGATWQQLGIALDED---WHLSFPYVFDYH-GQIYMM-- 256 (802)
Q Consensus 187 F~ADPFll~~~g~~ylF~E~~~~~-~~---~G~I~va~S~D~g~tw~~~gvvLde~---~HLSyP~VF~~d-G~iYMi-- 256 (802)
.|.=|.++...+.+..|+|.+... .. .-.|.+..|.|.|.+|....++.+.+ .-++.|.++... |++||+
T Consensus 15 ~~RiPsl~~~~~~lla~~e~r~~~~~D~~~~~~iv~~~S~D~G~tW~~~~~i~~~~~~~~~~~~p~~v~~~~g~l~l~~~ 94 (351)
T cd00260 15 SFRIPSLVCTPGTLLAFADARYGGCSDRSNAIDIVARRSTDGGKTWSPSTVISDGDGKSSRVKDPTVVVDGLGRVFLLVG 94 (351)
T ss_pred EEecceEEEECCEEEEEEEEEEcCCCCCCcccceeEEEeccCCCcccccEEehhcCCCCCcEEcceEEEcCCCCEEEEEE
Confidence 455599998888999999987532 22 34688888999999999986655543 346789998887 999999
Q ss_pred --eCCC---------CCCeeEEEEeccCCcCceeeeeccCC----------CccCCEEEEECCEEEEEEeCCCCCCCCCC
Q 045656 257 --PESR---------AKGEVRLYRAVNFPLEWKLEKIIMKK----------PLVDPFMINHDGQYWLFGSDHSGFGTTQN 315 (802)
Q Consensus 257 --PEss---------~sg~l~LYra~~FP~~We~~~~Ll~~----------~~vDatI~~~dG~wwLF~S~~~~~g~~~n 315 (802)
|+.. ....+.+.+..+--..|.....+... ....+.+...+|++.+...... .. ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~p~~l~~~~~~~~~~~~~~~~g~gi~l~~Grlv~p~~~~~--~~-~~ 171 (351)
T cd00260 95 SFPNGEGEDNDYAGPSNAYLVLVYSDDDGITWSSPRDLTPSVKGDNWAALFTGPGSGIQMKDGRLVFPVYGGN--AG-GR 171 (351)
T ss_pred ECCCcccccccccCCCceEEEEEEEEcCCceecCCccCCccccCcceeEEEecCcCeEEecCCcEEEEEEEEc--CC-CC
Confidence 3321 23567788887766679754433221 1223345555899887764321 11 11
Q ss_pred CcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEE-CCeEEEEcccCCCCCCceEEEEEecc
Q 045656 316 GQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVY-DGNLYRVGQDCAESYGRRVRTFKVEI 382 (802)
Q Consensus 316 ~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~-dGkLyRp~QdC~~~YG~~L~l~~It~ 382 (802)
....+.+|++---.|+.-...+. . ..-.-+++++. ||+|++..-. .. +..+.+++.++
T Consensus 172 ~~~~~~~S~D~G~tW~~~~~~~~--~----~~~~e~~i~el~dG~l~~~~R~-~~--~~~~~~~~S~D 230 (351)
T cd00260 172 VSSAIIYSDDSGKTWKLGEGVND--A----GGCSECSVVELSDGKLYMYTRD-NS--GGRRPVYESRD 230 (351)
T ss_pred EEEEEEEECCCCCCcEECCCCCC--C----CCCcCCEEEEecCCEEEEEEee-CC--CCcEEEEEEcC
Confidence 24556777765446975332221 0 01123677887 9999886544 22 34455555554
No 78
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=96.23 E-value=0.088 Score=58.29 Aligned_cols=139 Identities=22% Similarity=0.333 Sum_probs=87.6
Q ss_pred EECCEEEEEEEeeeccCC-Cc-----eEEEEEEeCCCCCceEeeeeecCCC--c-----eeeeEE----EEeCCEEEEE-
Q 045656 195 LQGNDLYLFYETKNSITM-QG-----DIGVAKSVDKGATWQQLGIALDEDW--H-----LSFPYV----FDYHGQIYMM- 256 (802)
Q Consensus 195 ~~~g~~ylF~E~~~~~~~-~G-----~I~va~S~D~g~tw~~~gvvLde~~--H-----LSyP~V----F~~dG~iYMi- 256 (802)
.-+++.||.|-..+.-.. .| .=+++.|+|++.+|+...-....+. | ...+|- ...||-+||+
T Consensus 102 ~v~~~~Yl~~msv~~wg~~~G~W~tn~S~i~~S~D~G~tW~~~~~~~~~~~~~~~g~~~~~~~fq~~a~~~~dgyVYv~g 181 (316)
T PF13810_consen 102 SVGGRQYLHYMSVRNWGNVPGSWTTNYSGIAYSDDNGETWTVVPGTIRPNSPFHPGFNQGNWNFQMAAFVKDDGYVYVYG 181 (316)
T ss_pred EECCcEEEEEEEEccCCCCCCccccCceEEEEeCCCCCCceeCCCcccccccccCCccccccccccccccCCCCEEEEEe
Confidence 467899998887643222 10 2235888899999998762222221 1 112332 2468889999
Q ss_pred eCCCCCCeeEEEEecc----CCcCcee----------e----eeccCCCccCCEEEEE--CCEEEEEEeCCCCCCCCCCC
Q 045656 257 PESRAKGEVRLYRAVN----FPLEWKL----------E----KIIMKKPLVDPFMINH--DGQYWLFGSDHSGFGTTQNG 316 (802)
Q Consensus 257 PEss~sg~l~LYra~~----FP~~We~----------~----~~Ll~~~~vDatI~~~--dG~wwLF~S~~~~~g~~~n~ 316 (802)
-+....+.+.|+|... -+..||. . +.++.+++---++..+ +|+|-|.|.+. .+.
T Consensus 182 t~~~R~g~~~LaRV~~~~i~d~~ayeyw~g~~~~W~~~~~~atpv~~~~vgElSv~~~~~~gk~Vl~~~~~------~~~ 255 (316)
T PF13810_consen 182 TPFGRNGGVYLARVPPDDILDRSAYEYWDGSGGGWSWGNPPATPVLPGPVGELSVRYNEYLGKWVLSYFDA------GTG 255 (316)
T ss_pred CCCCCCCcEEEEEeCHHHCCChhhccccCCCCcccccCCCCccccccCCccceEEEEeCCCCEEEEEEecc------cCC
Confidence 3455589999999742 1223332 1 1244444445566777 99999999763 346
Q ss_pred cEEEEEEcCCCCCCeeCCCCCeeeC
Q 045656 317 QLEIWYSSSPFGPWKPHKKNPIYNG 341 (802)
Q Consensus 317 ~L~i~~AdSplGPW~~hp~NPI~~~ 341 (802)
.+.+.+|++|.|||.+.+ +++..
T Consensus 256 ~I~~RtA~~P~GpWs~~~--~l~~~ 278 (316)
T PF13810_consen 256 GIVLRTAPSPTGPWSEPK--PLVTV 278 (316)
T ss_pred cEEEEecCCCCCCCCCCe--eEEeC
Confidence 899999999999998533 44443
No 79
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=96.18 E-value=0.0031 Score=58.87 Aligned_cols=111 Identities=18% Similarity=0.118 Sum_probs=78.8
Q ss_pred EEEEEecccChhhHHHHHHHhcCC-CCcceEEEEeCCCCCCCCC---C-CCCCCcEEEEEcCCcC--ccccCccCCCCCc
Q 045656 557 TMLTMTFDARLWNLKMYVKHYSRC-SSVKEIVVVWNKGEPPKLS---D-LDSAVPVRIRVEKQNS--LNNRFKLDPLIKT 629 (802)
Q Consensus 557 TvvI~Ty~~R~~~L~~~v~hya~~-p~v~kIvVVWn~~~pP~~~---~-~~s~vPVrv~~~~~NS--LNNRF~P~~~I~T 629 (802)
||||-||+ +...|.+.|+.+.+. ..-.||+||-|+..+.... . .+...+++++..+.|. -.+|-.-....++
T Consensus 1 Svvip~~n-~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~~ 79 (169)
T PF00535_consen 1 SVVIPTYN-EAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAKG 79 (169)
T ss_dssp EEEEEESS--TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH--S
T ss_pred CEEEEeeC-CHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccccccccccccccccccccccccce
Confidence 79999998 577888888877654 6678999998887322111 1 1246789999888773 2344444567889
Q ss_pred cEEEEecCCcccCHHHHHHHHHHHhhCCCceeecccccc
Q 045656 630 RGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLV 668 (802)
Q Consensus 630 ~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~R~h 668 (802)
+-|+.+|||..++.+-|+-.++.-++++..+|.......
T Consensus 80 ~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 118 (169)
T PF00535_consen 80 EYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYI 118 (169)
T ss_dssp SEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEE
T ss_pred eEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEe
Confidence 999999999999999999999999998777666555443
No 80
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=95.68 E-value=0.65 Score=51.14 Aligned_cols=206 Identities=23% Similarity=0.296 Sum_probs=119.2
Q ss_pred CCCeeccccccCCCCCCc----eeeCeeeEEECCEEEEEEEe----eeccCCCceEEEEEEeCCCCC-ceEee-eee-c-
Q 045656 169 ANPIMTCASVSSAGFPSN----FVADPFFYLQGNDLYLFYET----KNSITMQGDIGVAKSVDKGAT-WQQLG-IAL-D- 236 (802)
Q Consensus 169 ~NPVlt~~~v~d~~~~~~----F~ADPFll~~~g~~ylF~E~----~~~~~~~G~I~va~S~D~g~t-w~~~g-vvL-d- 236 (802)
+||+++..++.- ...+ .+=-|-+...++++.|++-. +.+.+..++|.++.|.| |.. |+... +++ .
T Consensus 10 ~npIi~~~~~~~--~~~~~~~~~vFNpav~~~~~~~~~l~Rv~~~yye~~~~~s~l~ia~s~d-gi~~~~~e~ep~~~P~ 86 (314)
T COG2152 10 TNPIITRSDYIP--PHARFIVVSVFNPAVVLVGGELLLLYRVVEGYYEDHSSISHLRIARSDD-GIGEFEIEPEPTLWPA 86 (314)
T ss_pred CCCceeeccccC--CCCceeEEEEecceeEEECCEEEEEEEEeccccccCccceEEEEEeccc-CCCceecCCcceEecC
Confidence 689988666532 1233 45568888999999999876 22234679999999877 666 65433 222 2
Q ss_pred ----CCCceeeeEEEEeCCEEEEEeCC--CCCCeeEEEEeccCCcCceeeeeccCCCccCCEEE--EECCEEEEEEeCCC
Q 045656 237 ----EDWHLSFPYVFDYHGQIYMMPES--RAKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMI--NHDGQYWLFGSDHS 308 (802)
Q Consensus 237 ----e~~HLSyP~VF~~dG~iYMiPEs--s~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~--~~dG~wwLF~S~~~ 308 (802)
|.|-.=.|-|+..++++||.--. ....+.+|--..+|+. |++...++....-|+.++ +.+|+|.|+.-...
T Consensus 87 ~~~~e~~G~EDPRvt~I~~~y~mtYTa~s~~g~~~~la~t~~f~n-~~rig~i~~pdn~~~~lfP~~~ngk~~~lhr~~~ 165 (314)
T COG2152 87 NYPYEIYGIEDPRVTKIGGRYYMTYTAYSDKGPRLALAVTKDFLN-WERIGAIFPPDNKDAALFPKKINGKYALLHRPVL 165 (314)
T ss_pred CCchhhhcccCceEEEECCEEEEEEEecCCCCcccchhhhhhhhh-hhhcccccCCCCCCceEeeEEecCcEEEEEeecc
Confidence 12445569999999999999654 4445566766778865 998776443244455554 45999999984321
Q ss_pred CCCCCCCCcEEEEEEcCCCC-CCeeCCC--CCeeeCC-CCCCcccCCccEEE-CCeEEE---EcccCCCCCCceEEEEEe
Q 045656 309 GFGTTQNGQLEIWYSSSPFG-PWKPHKK--NPIYNGD-KSLGARNGGRPFVY-DGNLYR---VGQDCAESYGRRVRTFKV 380 (802)
Q Consensus 309 ~~g~~~n~~L~i~~AdSplG-PW~~hp~--NPI~~~~-~~~~aR~GG~vF~~-dGkLyR---p~QdC~~~YG~~L~l~~I 380 (802)
+... ....+|.|-|+.. .|.-|.. -++..+. ....-..|-.+++- +|-|.+ ..++|+ .|=-++.++..
T Consensus 166 --~~~~-~~~niwia~S~dl~~w~~~~~~l~~~~~~~~d~~KIG~g~~Pikt~egwLvlyHgv~~~~~-~Yr~GaALlDl 241 (314)
T COG2152 166 --GEYG-MKGNIWIAFSPDLEHWGIHRKLLGPRMGGWWDELKIGWGTPPIKTEEGWLVLYHGVDETLT-VYRLGAALLDL 241 (314)
T ss_pred --cccC-ccCceEEEEcCCccCCCccceeeccccCCcchhhhccCCCCCcCcccceEEEEeeccCccc-eEEeeeEEEcC
Confidence 1111 0233555555533 4766542 1111100 00111222234533 776654 233333 57777777766
Q ss_pred cc
Q 045656 381 EI 382 (802)
Q Consensus 381 t~ 382 (802)
++
T Consensus 242 ed 243 (314)
T COG2152 242 ED 243 (314)
T ss_pred CC
Confidence 54
No 81
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=95.50 E-value=0.71 Score=49.42 Aligned_cols=198 Identities=19% Similarity=0.262 Sum_probs=117.7
Q ss_pred CCCCCCeeccccccCCCCCCceeeCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeee----ecCCCce
Q 045656 166 WPVANPIMTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIA----LDEDWHL 241 (802)
Q Consensus 166 w~~~NPVlt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvv----Lde~~HL 241 (802)
|-...|++..++ + .--+-||-++.++|+++||++..+....=|-.....+. +|.+.+.+ |+. .-
T Consensus 9 WtStg~L~~Pk~----g--~~slKD~T~V~ynGk~~VyAtt~d~~~~y~sm~f~~Ft----dws~~~sA~q~~m~~--~~ 76 (271)
T PF03664_consen 9 WTSTGPLAQPKS----G--WVSLKDFTIVPYNGKHHVYATTADTGGGYGSMNFGPFT----DWSQMASASQNYMDQ--SA 76 (271)
T ss_pred eccCCccccCCC----C--ceeccCceEEeECCEEEEEEEeccCCCccceEeeeccC----CHHHhhccccccCCc--cc
Confidence 444556655333 1 12357999999999999999997654333323333322 35443321 222 24
Q ss_pred eeeEEEEe--CCEEEEEeCCCCCCeeEEEEeccC---CcCceeeeeccC-------CCccCCEEEEECCEEEEEEeCCCC
Q 045656 242 SFPYVFDY--HGQIYMMPESRAKGEVRLYRAVNF---PLEWKLEKIIMK-------KPLVDPFMINHDGQYWLFGSDHSG 309 (802)
Q Consensus 242 SyP~VF~~--dG~iYMiPEss~sg~l~LYra~~F---P~~We~~~~Ll~-------~~~vDatI~~~dG~wwLF~S~~~~ 309 (802)
-+|.||-. .+.+||+-+... .---|+...- |..|...+.|.. ...+|.+++-.+-.-|||.++-
T Consensus 77 vAP~vFYFaPk~~W~L~yQwg~--~~fsY~Ts~DptnpngWSapq~lf~g~i~~~~~g~iD~~vI~D~~n~yLFfa~D-- 152 (271)
T PF03664_consen 77 VAPQVFYFAPKNIWYLAYQWGP--AAFSYSTSSDPTNPNGWSAPQPLFSGSISGSGTGPIDQWVICDDTNMYLFFAGD-- 152 (271)
T ss_pred ccceEEEecCCcEEEEEEecCC--CcceeecCCCCCCCccCCCCcccccccccCCCCCceeeEEEecCCceEEEEcCC--
Confidence 57998644 678999976442 2235666544 557988877642 2479999999999999999762
Q ss_pred CCCCCCCcEEEEEEcCCCCCCeeCCC-CCeeeC-CCCCCcccCCccEEEC--CeEEEEcccCCCCCCceEEEEEeccCC-
Q 045656 310 FGTTQNGQLEIWYSSSPFGPWKPHKK-NPIYNG-DKSLGARNGGRPFVYD--GNLYRVGQDCAESYGRRVRTFKVEILT- 384 (802)
Q Consensus 310 ~g~~~n~~L~i~~AdSplGPW~~hp~-NPI~~~-~~~~~aR~GG~vF~~d--GkLyRp~QdC~~~YG~~L~l~~It~Lt- 384 (802)
|+ .||+|..++|.+-.--. ++++.. +....-=+|..|++.+ +++.++ =+|-+.=||-.+-+-.+.|+
T Consensus 153 -----nG--kiYRs~~~i~nFP~~fgs~~~vvmsd~~~nLFEA~~VYkv~G~~~YLmi-VEaiGs~gRyFRSfTa~sL~G 224 (271)
T PF03664_consen 153 -----NG--KIYRSSMPIGNFPGGFGSSYTVVMSDTRNNLFEAVQVYKVKGQNQYLMI-VEAIGSDGRYFRSFTATSLDG 224 (271)
T ss_pred -----CC--cEEEeccchhhCCCCCCCceEEEEecCccceeeeeEEEEEcCCceEEEE-EEEecCCCcEEEeeecCCCCC
Confidence 32 47899999987744333 454432 1111122456666663 344443 34544445666666666664
Q ss_pred ccc
Q 045656 385 KNE 387 (802)
Q Consensus 385 ~~~ 387 (802)
+|+
T Consensus 225 ~Wt 227 (271)
T PF03664_consen 225 PWT 227 (271)
T ss_pred cce
Confidence 443
No 82
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=95.48 E-value=2.4 Score=46.54 Aligned_cols=190 Identities=14% Similarity=0.219 Sum_probs=109.3
Q ss_pred ceeeCeeeEEEC-CEEEEEEEeeecc---------CCCceEEEEEEeCCCCCceEeeeeecC----CCceeeeE----EE
Q 045656 186 NFVADPFFYLQG-NDLYLFYETKNSI---------TMQGDIGVAKSVDKGATWQQLGIALDE----DWHLSFPY----VF 247 (802)
Q Consensus 186 ~F~ADPFll~~~-g~~ylF~E~~~~~---------~~~G~I~va~S~D~g~tw~~~gvvLde----~~HLSyP~----VF 247 (802)
..+-||.++... ++++||+...... .....+.+..|.|+|.+|.....+... .+...+|- |.
T Consensus 74 ~~~~~p~~v~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~p~~l~~~~~~~~~~~~~~~~g~gi~ 153 (351)
T cd00260 74 SRVKDPTVVVDGLGRVFLLVGSFPNGEGEDNDYAGPSNAYLVLVYSDDDGITWSSPRDLTPSVKGDNWAALFTGPGSGIQ 153 (351)
T ss_pred CcEEcceEEEcCCCCEEEEEEECCCcccccccccCCCceEEEEEEEEcCCceecCCccCCccccCcceeEEEecCcCeEE
Confidence 345789999887 9999999876432 124578889999999999876544333 23333322 33
Q ss_pred EeCCEEEEEeCC--C-CCCeeEEEEeccCCcCceeeeeccC-CCccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEEE
Q 045656 248 DYHGQIYMMPES--R-AKGEVRLYRAVNFPLEWKLEKIIMK-KPLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIWY 322 (802)
Q Consensus 248 ~~dG~iYMiPEs--s-~sg~l~LYra~~FP~~We~~~~Ll~-~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~~ 322 (802)
..+|.++|--.. . ......+..+.+-=..|+....... .....++|++. ||+.+|+..... .....+++
T Consensus 154 l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~i~el~dG~l~~~~R~~~------~~~~~~~~ 227 (351)
T cd00260 154 MKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVNDAGGCSECSVVELSDGKLYMYTRDNS------GGRRPVYE 227 (351)
T ss_pred ecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCCCCCCcCCEEEEecCCEEEEEEeeCC------CCcEEEEE
Confidence 446776655222 1 1223344445554457976443333 44678999999 999988875421 34667888
Q ss_pred EcCCCCCCeeCCCCCeee-CCCCCCcccC--CccEEE--C-C-eEEEEcccCCCCCCceEEEEEec
Q 045656 323 SSSPFGPWKPHKKNPIYN-GDKSLGARNG--GRPFVY--D-G-NLYRVGQDCAESYGRRVRTFKVE 381 (802)
Q Consensus 323 AdSplGPW~~hp~NPI~~-~~~~~~aR~G--G~vF~~--d-G-kLyRp~QdC~~~YG~~L~l~~It 381 (802)
|++---.|++....+... +.......++ |.++.. + | ++....+......=..+.+.-.+
T Consensus 228 S~D~G~tWs~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~g~~~ll~~~~~~~~~R~~l~l~~s~ 293 (351)
T cd00260 228 SRDMGTTWTEALGTLSRVWGNCPTRCGSGVQGSFITATIESGKKVMLLSRPNSPDSRSNLTLWLTD 293 (351)
T ss_pred EcCCCcCcccCcCCccccccccccCCCCcccceEEEeEecCCCEEEEEeCCCCCCCCCceEEEEEe
Confidence 876544798755432210 0000011223 555544 2 4 55666666554344455555443
No 83
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=95.37 E-value=0.046 Score=54.00 Aligned_cols=111 Identities=11% Similarity=0.119 Sum_probs=73.0
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCCCCc-ceEEEEeCCCCCCCCC----CC-CCCCcEEEEEcCCcC-c-cccCccCCC
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRCSSV-KEIVVVWNKGEPPKLS----DL-DSAVPVRIRVEKQNS-L-NNRFKLDPL 626 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~p~v-~kIvVVWn~~~pP~~~----~~-~s~vPVrv~~~~~NS-L-NNRF~P~~~ 626 (802)
++||+|-+|++.+..|.+.|+.+.+...- -+|+||-++...+... .+ .....++++..+.|. . ..|=.-...
T Consensus 2 ~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~ 81 (202)
T cd04184 2 LISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSALEL 81 (202)
T ss_pred eEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHHHh
Confidence 48999999984337788888888664433 3899998876443221 11 122346666555542 2 111112235
Q ss_pred CCccEEEEecCCcccCHHHHHHHHHHHhhCCCceeeccc
Q 045656 627 IKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYP 665 (802)
Q Consensus 627 I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~ 665 (802)
.++|-|+.+|+|..+.++-|+...+...++|+.-+.+..
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~ 120 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSD 120 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEcc
Confidence 678999999999999999999999999777765333333
No 84
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=94.75 E-value=0.15 Score=52.51 Aligned_cols=108 Identities=10% Similarity=0.052 Sum_probs=69.8
Q ss_pred CCceEEEEEecccChhhHHHHHHHhcCCCCc---ceEEEEeCCCCCCCCC---CCCCCCcEEEEEcCCcC--ccccCccC
Q 045656 553 YSQFTMLTMTFDARLWNLKMYVKHYSRCSSV---KEIVVVWNKGEPPKLS---DLDSAVPVRIRVEKQNS--LNNRFKLD 624 (802)
Q Consensus 553 ~~qFTvvI~Ty~~R~~~L~~~v~hya~~p~v---~kIvVVWn~~~pP~~~---~~~s~vPVrv~~~~~NS--LNNRF~P~ 624 (802)
...+||||-+|+ +...|.+.|+.+.+-... -||+||=++....... .+... .|+++..+.|. -.+|-.-.
T Consensus 28 ~~~isVvip~~n-~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~v~~i~~~~~~g~~~a~n~gi 105 (251)
T cd06439 28 LPTVTIIIPAYN-EEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK-GVKLLRFPERRGKAAALNRAL 105 (251)
T ss_pred CCEEEEEEecCC-cHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC-cEEEEEcCCCCChHHHHHHHH
Confidence 457999999998 667788888887553322 3788884443332221 12112 57777666542 23333334
Q ss_pred CCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceee
Q 045656 625 PLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVG 662 (802)
Q Consensus 625 ~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVG 662 (802)
...++|.|+.+|+|..++++.|+-....++....-+|+
T Consensus 106 ~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 143 (251)
T cd06439 106 ALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVS 143 (251)
T ss_pred HHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEE
Confidence 56778999999999999999898888777533323443
No 85
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=94.22 E-value=0.12 Score=52.01 Aligned_cols=108 Identities=18% Similarity=0.150 Sum_probs=70.5
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCCCCcc---eEEEEeCCCCCCCCCC----CCCCCcEEEEEcCCcCcc---ccCccC
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRCSSVK---EIVVVWNKGEPPKLSD----LDSAVPVRIRVEKQNSLN---NRFKLD 624 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~p~v~---kIvVVWn~~~pP~~~~----~~s~vPVrv~~~~~NSLN---NRF~P~ 624 (802)
+.+|+|-+|++....|++.++.+.+...-. ||+|| .+.+...... +....+++++..+.|... ++=.-.
T Consensus 2 ~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivv-dd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 80 (234)
T cd06421 2 TVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVL-DDGRRPELRALAAELGVEYGYRYLTRPDNRHAKAGNLNNAL 80 (234)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEE-cCCCchhHHHHHHHhhcccCceEEEeCCCCCCcHHHHHHHH
Confidence 479999999844456888888887766655 78887 4433322211 222224555554444321 111112
Q ss_pred CCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCc-eeec
Q 045656 625 PLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDR-IVGF 663 (802)
Q Consensus 625 ~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdR-LVGF 663 (802)
...+.|-|+.+|+|..++++.|+.....+.++|+- +|+.
T Consensus 81 ~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~ 120 (234)
T cd06421 81 AHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQT 120 (234)
T ss_pred HhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEec
Confidence 34589999999999999999999999999987664 5543
No 86
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=93.84 E-value=0.82 Score=46.37 Aligned_cols=107 Identities=21% Similarity=0.224 Sum_probs=65.3
Q ss_pred EEEEecccChhhHHHHHHHhcCCCCcceEEEEeCCCCCCCCCC-CC-CCCcEEEEEcCCcC-----ccccCccCCCCCcc
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLSD-LD-SAVPVRIRVEKQNS-----LNNRFKLDPLIKTR 630 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p~v~kIvVVWn~~~pP~~~~-~~-s~vPVrv~~~~~NS-----LNNRF~P~~~I~T~ 630 (802)
+||-+|+..+..|.+.|+.+.+- ..+|+||=|+.. +.... .. ...+++++..+.|. +|.=+.-.....+|
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q--~~~iivvDn~s~-~~~~~~~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d 77 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQ--VDKVVVVDNSSG-NDIELRLRLNSEKIELIHLGENLGIAKALNIGIKAALENGAD 77 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhcc--CCEEEEEeCCCC-ccHHHHhhccCCcEEEEECCCceehHHhhhHHHHHHHhCCCC
Confidence 47889985447888888887764 678988844332 22221 11 24567777766552 11111111112569
Q ss_pred EEEEecCCcccCHHHHHHHHHHHhhC---CCceeecccccc
Q 045656 631 GVLELDDDIMMTCDDIERGFQVWRQH---PDRIVGFYPRLV 668 (802)
Q Consensus 631 AVLslDDDv~l~~deLeFAF~vWr~~---PdRLVGF~~R~h 668 (802)
-|+.+|||+.++++.|+... .|... -..+..+.|+..
T Consensus 78 ~v~~lD~D~~~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~~ 117 (237)
T cd02526 78 YVLLFDQDSVPPPDMVEKLL-AYKILSDKNSNIGAVGPRII 117 (237)
T ss_pred EEEEECCCCCcCHhHHHHHH-HHHHhhccCCCeEEEeeeEE
Confidence 99999999999999999997 44432 233444555443
No 87
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.61 E-value=0.23 Score=49.36 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=61.5
Q ss_pred EEEEecccChhhHHHHHHHhcCCCC-cceEEEEeCCCCCCCCC----CCCCCCcEEEEEcCCcC-----ccccCccCCCC
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCSS-VKEIVVVWNKGEPPKLS----DLDSAVPVRIRVEKQNS-----LNNRFKLDPLI 627 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p~-v~kIvVVWn~~~pP~~~----~~~s~vPVrv~~~~~NS-----LNNRF~P~~~I 627 (802)
|||-||+ +...|.+.|+.+.+... -.+|+|+ ++....... .+....+++++..++|. +|.=+.--...
T Consensus 1 viI~~~n-~~~~l~~~l~sl~~q~~~~~eiiiv-D~~s~d~t~~~~~~~~~~~~i~~~~~~~n~g~~~~~n~~~~~a~~~ 78 (202)
T cd04185 1 AVVVTYN-RLDLLKECLDALLAQTRPPDHIIVI-DNASTDGTAEWLTSLGDLDNIVYLRLPENLGGAGGFYEGVRRAYEL 78 (202)
T ss_pred CEEEeeC-CHHHHHHHHHHHHhccCCCceEEEE-ECCCCcchHHHHHHhcCCCceEEEECccccchhhHHHHHHHHHhcc
Confidence 5889998 66778888888865432 3466555 554433222 12233457777666552 22212111145
Q ss_pred CccEEEEecCCcccCHHHHHHHHHHHh
Q 045656 628 KTRGVLELDDDIMMTCDDIERGFQVWR 654 (802)
Q Consensus 628 ~T~AVLslDDDv~l~~deLeFAF~vWr 654 (802)
..|.|+.+|||..++++-|+...+.++
T Consensus 79 ~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 79 GYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred CCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 689999999999999999999888887
No 88
>PRK11204 N-glycosyltransferase; Provisional
Probab=93.55 E-value=0.17 Score=56.96 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=74.1
Q ss_pred CCceEEEEEecccChhhHHHHHHHhcCCCCc-ceEEEEeCCCCCCCCC---CCCCC-CcEEEEEcCCcC--ccccCccCC
Q 045656 553 YSQFTMLTMTFDARLWNLKMYVKHYSRCSSV-KEIVVVWNKGEPPKLS---DLDSA-VPVRIRVEKQNS--LNNRFKLDP 625 (802)
Q Consensus 553 ~~qFTvvI~Ty~~R~~~L~~~v~hya~~p~v-~kIvVVWn~~~pP~~~---~~~s~-vPVrv~~~~~NS--LNNRF~P~~ 625 (802)
...+||+|-+|+ +...+.+.++...+..+- -||+||=++..+.... .+... ..++++..++|. -.++=.-..
T Consensus 53 ~p~vsViIp~yn-e~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g~~ 131 (420)
T PRK11204 53 YPGVSILVPCYN-EGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLAENQGKANALNTGAA 131 (420)
T ss_pred CCCEEEEEecCC-CHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999998 466788888877654332 4888887654433222 11122 237777644432 111111123
Q ss_pred CCCccEEEEecCCcccCHHHHHHHHHHHhhCCCc-eeecccccc
Q 045656 626 LIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDR-IVGFYPRLV 668 (802)
Q Consensus 626 ~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdR-LVGF~~R~h 668 (802)
..+.|-|+.+|+|..++++-|+...+..+++|+- +|+-.++..
T Consensus 132 ~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~ 175 (420)
T PRK11204 132 AARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIR 175 (420)
T ss_pred HcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceec
Confidence 4678999999999999999999998888877753 555555543
No 89
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=93.47 E-value=0.17 Score=54.29 Aligned_cols=106 Identities=16% Similarity=0.143 Sum_probs=72.9
Q ss_pred EEEEEecccChhhHHHHHHHhcC-CC-C-cceEEEEeCCCCCCCCCCC------CCCCcEEEEEcCCcC--ccccCccCC
Q 045656 557 TMLTMTFDARLWNLKMYVKHYSR-CS-S-VKEIVVVWNKGEPPKLSDL------DSAVPVRIRVEKQNS--LNNRFKLDP 625 (802)
Q Consensus 557 TvvI~Ty~~R~~~L~~~v~hya~-~p-~-v~kIvVVWn~~~pP~~~~~------~s~vPVrv~~~~~NS--LNNRF~P~~ 625 (802)
+|||.+|+.....|.+.|+.+.+ .+ . ..|||||=|+...+..... .....|+++..+.|. -..|=.-..
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~ 80 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGAR 80 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 58999998543788888887753 32 2 2489888776544332211 123468888777653 111111123
Q ss_pred CCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceee
Q 045656 626 LIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVG 662 (802)
Q Consensus 626 ~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVG 662 (802)
.-+.|-|+.+|+|+.++++-|+-..+.-.++|..+|+
T Consensus 81 ~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~ 117 (299)
T cd02510 81 AATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVC 117 (299)
T ss_pred HccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEE
Confidence 4578999999999999999999999988899998887
No 90
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.44 E-value=0.52 Score=47.21 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=64.9
Q ss_pred eEEEEEecccChhhHHHHHHHhcCCC-CcceEEEEeCCCCCCCCCCCCCCCcEEEEEcCCcCccccCccCCCCCccEEEE
Q 045656 556 FTMLTMTFDARLWNLKMYVKHYSRCS-SVKEIVVVWNKGEPPKLSDLDSAVPVRIRVEKQNSLNNRFKLDPLIKTRGVLE 634 (802)
Q Consensus 556 FTvvI~Ty~~R~~~L~~~v~hya~~p-~v~kIvVVWn~~~pP~~~~~~s~vPVrv~~~~~NSLNNRF~P~~~I~T~AVLs 634 (802)
.||+|-+|+ +...|...|+.+.+-. .--+|+|| ++...+...+.-....+++...+.+.=..|=.-....+++-|+.
T Consensus 1 vsvii~~~n-~~~~l~~~l~sl~~q~~~~~evivv-dd~s~d~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~~~i~~ 78 (221)
T cd02522 1 LSIIIPTLN-EAENLPRLLASLRRLNPLPLEIIVV-DGGSTDGTVAIARSAGVVVISSPKGRARQMNAGAAAARGDWLLF 78 (221)
T ss_pred CEEEEEccC-cHHHHHHHHHHHHhccCCCcEEEEE-eCCCCccHHHHHhcCCeEEEeCCcCHHHHHHHHHHhccCCEEEE
Confidence 489999998 4456766676665432 34578888 55443322221112445555444332122222334567999999
Q ss_pred ecCCcccCHHHHHHHHHHHhhCCCceeeccc
Q 045656 635 LDDDIMMTCDDIERGFQVWRQHPDRIVGFYP 665 (802)
Q Consensus 635 lDDDv~l~~deLeFAF~vWr~~PdRLVGF~~ 665 (802)
+|+|..++.+-|+..+...+..+. .+|...
T Consensus 79 ~D~D~~~~~~~l~~l~~~~~~~~~-~~~~~~ 108 (221)
T cd02522 79 LHADTRLPPDWDAAIIETLRADGA-VAGAFR 108 (221)
T ss_pred EcCCCCCChhHHHHHHHHhhcCCc-EEEEEE
Confidence 999999999999988776665544 555443
No 91
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=92.93 E-value=2.4 Score=44.52 Aligned_cols=171 Identities=17% Similarity=0.181 Sum_probs=103.3
Q ss_pred CEEEEEEEeeeccCCCceEEEEEE--eCCCCCceEeeeeecCC---CceeeeEEEE-eCCEEEEEe----CCC--CCCee
Q 045656 198 NDLYLFYETKNSITMQGDIGVAKS--VDKGATWQQLGIALDED---WHLSFPYVFD-YHGQIYMMP----ESR--AKGEV 265 (802)
Q Consensus 198 g~~ylF~E~~~~~~~~G~I~va~S--~D~g~tw~~~gvvLde~---~HLSyP~VF~-~dG~iYMiP----Ess--~sg~l 265 (802)
|+++++++. ....+..+|.+..| +|.|.+|....+|.+-+ ..+.-|.++. .+|+++|+= ... ....+
T Consensus 1 G~l~a~~~~-~~~~~~~d~~i~~S~s~D~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~ 79 (275)
T PF13088_consen 1 GRLLAVWEG-GSDEGAIDIVIRRSRSTDGGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRI 79 (275)
T ss_dssp SEEEEEEEE-SSCSCCEEEEEEEECCCCCTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEE
T ss_pred CeEEEEEEC-CcccCCCCEEEEEEEeeCCCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeE
Confidence 567888887 33334667777888 99999999998878766 6688999875 589999984 111 22333
Q ss_pred EEEEeccCCcCceeeeeccC-------CCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCe
Q 045656 266 RLYRAVNFPLEWKLEKIIMK-------KPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPI 338 (802)
Q Consensus 266 ~LYra~~FP~~We~~~~Ll~-------~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI 338 (802)
..++..+--..|.....|.. .+.-+..+...+|++++-+... ........++++++---.|+.....+
T Consensus 80 ~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~~~~----~~~~~~~~~~~S~D~G~tW~~~~~~~- 154 (275)
T PF13088_consen 80 YYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPYYHE----SGGSFSAFVYYSDDGGKTWSSGSPIP- 154 (275)
T ss_dssp EEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEEEEE----SSCEEEEEEEEESSTTSSEEEEEECE-
T ss_pred EEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEEeec----cccCcceEEEEeCCCCceeecccccc-
Confidence 34777776678987654332 1233334566699988875431 11224566777776666797643211
Q ss_pred eeCCCCCCcccCCccEEE-CCeEEEEcccCCCCCCceEEEEEecc
Q 045656 339 YNGDKSLGARNGGRPFVY-DGNLYRVGQDCAESYGRRVRTFKVEI 382 (802)
Q Consensus 339 ~~~~~~~~aR~GG~vF~~-dGkLyRp~QdC~~~YG~~L~l~~It~ 382 (802)
.. ..-.-..++.. ||+++....+.. ...+.+.+.++
T Consensus 155 -~~----~~~~e~~~~~~~dG~l~~~~R~~~---~~~~~~~~S~D 191 (275)
T PF13088_consen 155 -DG----QGECEPSIVELPDGRLLAVFRTEG---NDDIYISRSTD 191 (275)
T ss_dssp -CS----EEEEEEEEEEETTSEEEEEEEECS---STEEEEEEESS
T ss_pred -cc----CCcceeEEEECCCCcEEEEEEccC---CCcEEEEEECC
Confidence 10 00111233333 789988887741 11555555554
No 92
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=92.76 E-value=0.37 Score=48.83 Aligned_cols=110 Identities=10% Similarity=-0.018 Sum_probs=69.3
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCCC---CcceEEEEeCCCCCCCCC---CC-CCCCcEEEEEcCCcCcc-ccCccCCC
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRCS---SVKEIVVVWNKGEPPKLS---DL-DSAVPVRIRVEKQNSLN-NRFKLDPL 626 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~p---~v~kIvVVWn~~~pP~~~---~~-~s~vPVrv~~~~~NSLN-NRF~P~~~ 626 (802)
+++|||-+|+ +...|.+.++.+.+-. .--||+||=|+....... .+ .....|+++..+.+... .+=.-...
T Consensus 1 ~~sIiip~~n-~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~N~g~~~ 79 (249)
T cd02525 1 FVSIIIPVRN-EEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNPKRIQSAGLNIGIRN 79 (249)
T ss_pred CEEEEEEcCC-chhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCCCCCchHHHHHHHHH
Confidence 4799999998 5667888888875432 345888883332222111 11 12234777755443321 11111234
Q ss_pred CCccEEEEecCCcccCHHHHHHHHHHHhhCCCceeeccc
Q 045656 627 IKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYP 665 (802)
Q Consensus 627 I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~ 665 (802)
.++|-|+.+|||..++++.|+...+.-++.+..+|+...
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~ 118 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPM 118 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecce
Confidence 589999999999999999999988877766666665443
No 93
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=92.55 E-value=3.5 Score=45.78 Aligned_cols=141 Identities=17% Similarity=0.293 Sum_probs=79.1
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccC--CCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeC-------CEEEE
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSIT--MQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYH-------GQIYM 255 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~--~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~d-------G~iYM 255 (802)
...+.+|..+..++++||++..++... ....|-++++.+.+.+|.....++.+..+ +-...+--. +...+
T Consensus 57 ~v~v~rPTtvvkgn~IymLvG~y~~~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~-~~~~figgGGSGV~m~dGTLV 135 (310)
T PF13859_consen 57 RVDVSRPTTVVKGNKIYMLVGSYSRSAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQ-SWKQFIGGGGSGVVMEDGTLV 135 (310)
T ss_dssp T-EEEEEEEEEETTEEEEEEEEESS--SSTTEEEEEEEEESSSSEE---EE-GGGS-E-EEEEEEE-SEE-EE-TTS-EE
T ss_pred ccccceeeeeecceeEEEEEEEEeccccccccceeeeeccCCcceeeecccCCchhcc-ccceeecCCCCceEEcCCCEE
Confidence 346779999999999999999987532 34567788888888899887765554431 111223222 12222
Q ss_pred Ee-CC---CCC--CeeEEEEeccCCcCceeeeeccCCCccCCEEEEE-CCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCC
Q 045656 256 MP-ES---RAK--GEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINH-DGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFG 328 (802)
Q Consensus 256 iP-Es---s~s--g~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~-dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplG 328 (802)
+| |. ... -.+.+|- ++--..|++-+-.-.....||+|++. +|+--|.+... +++.-+|.|.+-=-
T Consensus 136 FPv~a~~~~~~~~~SlIiYS-~d~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~-------~g~rrVYeS~DmG~ 207 (310)
T PF13859_consen 136 FPVQATKKNGDGTVSLIIYS-TDDGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACD-------DGRRRVYESGDMGT 207 (310)
T ss_dssp EEEEEEETT---EEEEEEEE-SSTTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-T-------TS---EEEESSTTS
T ss_pred EEEeeeccCccceEEEEEEE-CCCccceEeccccCCCCcceEEEEeccCCeeEEEEecc-------cceEEEEEEcccce
Confidence 34 21 222 3456674 45457899876655677899999999 89999987541 33456888765444
Q ss_pred CCeeCC
Q 045656 329 PWKPHK 334 (802)
Q Consensus 329 PW~~hp 334 (802)
.|++..
T Consensus 208 tWtea~ 213 (310)
T PF13859_consen 208 TWTEAL 213 (310)
T ss_dssp S-EE-T
T ss_pred ehhhcc
Confidence 699854
No 94
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=92.44 E-value=0.18 Score=46.87 Aligned_cols=108 Identities=16% Similarity=0.113 Sum_probs=68.0
Q ss_pred EEEEecccChhhHHHHHHHhcCCC-CcceEEEEeCCCCCCCCCC---C-CC-CCcEEEEEcCCc--CccccCccCCCCCc
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCS-SVKEIVVVWNKGEPPKLSD---L-DS-AVPVRIRVEKQN--SLNNRFKLDPLIKT 629 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p-~v~kIvVVWn~~~pP~~~~---~-~s-~vPVrv~~~~~N--SLNNRF~P~~~I~T 629 (802)
|+|-+|+ +...|...|+.+.+-. .--+|+||-++........ . .. ...+.++..++| .-.+|-.-....++
T Consensus 1 Viip~~n-~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~~ 79 (180)
T cd06423 1 IIVPAYN-EEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAKG 79 (180)
T ss_pred CeecccC-hHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcCC
Confidence 5788998 5577877788775532 3468999977754332221 1 11 123444444443 23333334456699
Q ss_pred cEEEEecCCcccCHHHHHHHHHHHhhCCCceeeccccc
Q 045656 630 RGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRL 667 (802)
Q Consensus 630 ~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~R~ 667 (802)
|.|+.+|+|..+..+.|+-....+.+.++ +.+..++.
T Consensus 80 ~~i~~~D~D~~~~~~~l~~~~~~~~~~~~-~~~v~~~~ 116 (180)
T cd06423 80 DIVVVLDADTILEPDALKRLVVPFFADPK-VGAVQGRV 116 (180)
T ss_pred CEEEEECCCCCcChHHHHHHHHHhccCCC-eeeEeeeE
Confidence 99999999999999999887677777655 34444443
No 95
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=92.32 E-value=0.26 Score=49.89 Aligned_cols=100 Identities=16% Similarity=0.107 Sum_probs=65.7
Q ss_pred eEEEEEecccChhhHHHHHHHhcCCCCcceEEEEeCCCCCCCCCC---CCCCCcEEEEEcCCcC-ccccCccCCCCCccE
Q 045656 556 FTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLSD---LDSAVPVRIRVEKQNS-LNNRFKLDPLIKTRG 631 (802)
Q Consensus 556 FTvvI~Ty~~R~~~L~~~v~hya~~p~v~kIvVVWn~~~pP~~~~---~~s~vPVrv~~~~~NS-LNNRF~P~~~I~T~A 631 (802)
.||||-+|+.....|.+.|+++.+.. -.+|+||=++...+.... ......++++..+... -+++-.-....++|-
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~-~~eiivvdd~s~d~~~~~l~~~~~~~~~~v~~~~~~g~~~a~n~g~~~a~~d~ 80 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQK-PLEIIVVTDGDDEPYLSILSQTVKYGGIFVITVPHPGKRRALAEGIRHVTTDI 80 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCC-CCEEEEEeCCCChHHHHHHHhhccCCcEEEEecCCCChHHHHHHHHHHhCCCE
Confidence 68999999854378888888886643 458888855443332221 1122335555433322 222222334568999
Q ss_pred EEEecCCcccCHHHHHHHHHHHhhCC
Q 045656 632 VLELDDDIMMTCDDIERGFQVWRQHP 657 (802)
Q Consensus 632 VLslDDDv~l~~deLeFAF~vWr~~P 657 (802)
|+.+|||..+..+.|+-..+..+ +|
T Consensus 81 v~~lD~D~~~~~~~l~~l~~~~~-~~ 105 (235)
T cd06434 81 VVLLDSDTVWPPNALPEMLKPFE-DP 105 (235)
T ss_pred EEEECCCceeChhHHHHHHHhcc-CC
Confidence 99999999999999999998887 44
No 96
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=92.16 E-value=10 Score=42.09 Aligned_cols=184 Identities=20% Similarity=0.291 Sum_probs=96.6
Q ss_pred eeeEEECCEEEEEEEeeecc-CCC--ceEEEEEEeCCCCCceEeeeeecC-----CCceeeeEEEEeCCEEEEEeCC---
Q 045656 191 PFFYLQGNDLYLFYETKNSI-TMQ--GDIGVAKSVDKGATWQQLGIALDE-----DWHLSFPYVFDYHGQIYMMPES--- 259 (802)
Q Consensus 191 PFll~~~g~~ylF~E~~~~~-~~~--G~I~va~S~D~g~tw~~~gvvLde-----~~HLSyP~VF~~dG~iYMiPEs--- 259 (802)
|=++.-+|.+..|+|++.+. ... -.|+...+.+++.+|+....+++. .-+++-|-....++++||+-.+
T Consensus 2 PSLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~ 81 (310)
T PF13859_consen 2 PSLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR 81 (310)
T ss_dssp EEEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred CCEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence 77888899999999998553 223 444555577889999987766643 2447889999999999999643
Q ss_pred ---CCCCeeEEEEeccCCcCceeeeeccCCCc---------cCCEEEEECCE--EEEEEeCCCCCCCCCCCc-EE-EEEE
Q 045656 260 ---RAKGEVRLYRAVNFPLEWKLEKIIMKKPL---------VDPFMINHDGQ--YWLFGSDHSGFGTTQNGQ-LE-IWYS 323 (802)
Q Consensus 260 ---s~sg~l~LYra~~FP~~We~~~~Ll~~~~---------vDatI~~~dG~--wwLF~S~~~~~g~~~n~~-L~-i~~A 323 (802)
...-.+.|++..+--.+|.....|..... -.+-|.-.||. +=+-.+.. .+.+ .. |-||
T Consensus 82 ~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~------~~~~~~SlIiYS 155 (310)
T PF13859_consen 82 SAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKK------NGDGTVSLIIYS 155 (310)
T ss_dssp --SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEET------T---EEEEEEEE
T ss_pred cccccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeecc------CccceEEEEEEE
Confidence 23345788876543334765443322111 11112222332 11112221 1111 22 5556
Q ss_pred cCCCCCCeeCCCCCeeeCCCCCCcccCCccEEE-CCeEEEEcccCCCCCCceEEEEEeccCCccceEEec
Q 045656 324 SSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVY-DGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELE 392 (802)
Q Consensus 324 dSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~-dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~ 392 (802)
.+---.|+-...-| . ..++ ..+++++ +|+|.+.+. |. +| .-++||..++-. +..|-.
T Consensus 156 ~d~g~~W~lskg~s---~---~gC~-~psv~EWe~gkLlM~~~-c~--~g-~rrVYeS~DmG~-tWtea~ 213 (310)
T PF13859_consen 156 TDDGKTWKLSKGMS---P---AGCS-DPSVVEWEDGKLLMMTA-CD--DG-RRRVYESGDMGT-TWTEAL 213 (310)
T ss_dssp SSTTSS-EE-S----------TT-E-EEEEEEE-TTEEEEEEE--T--TS----EEEESSTTS-S-EE-T
T ss_pred CCCccceEeccccC---C---CCcc-eEEEEeccCCeeEEEEe-cc--cc-eEEEEEEcccce-ehhhcc
Confidence 65566798655333 0 1233 4788999 899999986 54 23 568999988854 234544
No 97
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=92.15 E-value=3.9 Score=44.02 Aligned_cols=157 Identities=21% Similarity=0.356 Sum_probs=95.3
Q ss_pred eeeE--EECCEEEEEEEeeeccCCCceEEEEEEeC--CCCCceEeeeee-----cCCCceeeeEEEEeCCEEEEEeCCCC
Q 045656 191 PFFY--LQGNDLYLFYETKNSITMQGDIGVAKSVD--KGATWQQLGIAL-----DEDWHLSFPYVFDYHGQIYMMPESRA 261 (802)
Q Consensus 191 PFll--~~~g~~ylF~E~~~~~~~~G~I~va~S~D--~g~tw~~~gvvL-----de~~HLSyP~VF~~dG~iYMiPEss~ 261 (802)
|-++ ...+.|||.|.. +....+..++.| +-..|....... ....--....|+-++-..||.--...
T Consensus 79 P~vFYFaPk~~W~L~yQw-----g~~~fsY~Ts~DptnpngWSapq~lf~g~i~~~~~g~iD~~vI~D~~n~yLFfa~Dn 153 (271)
T PF03664_consen 79 PQVFYFAPKNIWYLAYQW-----GPAAFSYSTSSDPTNPNGWSAPQPLFSGSISGSGTGPIDQWVICDDTNMYLFFAGDN 153 (271)
T ss_pred ceEEEecCCcEEEEEEec-----CCCcceeecCCCCCCCccCCCCcccccccccCCCCCceeeEEEecCCceEEEEcCCC
Confidence 7665 678899998874 222334445555 235576655432 22233467788888888999854322
Q ss_pred CCeeEEEEec----cCCcCceeee-eccCC----CccCCEEEEE--CCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCC
Q 045656 262 KGEVRLYRAV----NFPLEWKLEK-IIMKK----PLVDPFMINH--DGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPW 330 (802)
Q Consensus 262 sg~l~LYra~----~FP~~We~~~-~Ll~~----~~vDatI~~~--dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW 330 (802)
| .|||+. +||..+.-.. ++++. -.+.+.|.+. .++|.|+-=.. |... .-.--|+|+++-|+|
T Consensus 154 -G--kiYRs~~~i~nFP~~fgs~~~vvmsd~~~nLFEA~~VYkv~G~~~YLmiVEai---Gs~g-RyFRSfTa~sL~G~W 226 (271)
T PF03664_consen 154 -G--KIYRSSMPIGNFPGGFGSSYTVVMSDTRNNLFEAVQVYKVKGQNQYLMIVEAI---GSDG-RYFRSFTATSLDGPW 226 (271)
T ss_pred -C--cEEEeccchhhCCCCCCCceEEEEecCccceeeeeEEEEEcCCceEEEEEEEe---cCCC-cEEEeeecCCCCCcc
Confidence 2 578875 8999886444 34432 3677788877 35788887443 3211 233478999999999
Q ss_pred eeCC---CCCeeeCCCCCCcccCCccEEE---CCeEEEEcc
Q 045656 331 KPHK---KNPIYNGDKSLGARNGGRPFVY---DGNLYRVGQ 365 (802)
Q Consensus 331 ~~hp---~NPI~~~~~~~~aR~GG~vF~~---dGkLyRp~Q 365 (802)
++.. .||.... -|-|..-.. -|.|+|-.-
T Consensus 227 tp~A~tEsnPFAg~------aNsg~~WT~dISHGeliR~~~ 261 (271)
T PF03664_consen 227 TPQAATESNPFAGK------ANSGATWTNDISHGELIRSGP 261 (271)
T ss_pred eeccccccCCcccc------ccCCCccccccccceeeecCC
Confidence 9877 4664332 223444433 377777443
No 98
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.01 E-value=0.33 Score=45.64 Aligned_cols=103 Identities=18% Similarity=0.101 Sum_probs=63.7
Q ss_pred EEEEecccChhhHHHHHHHhcCCCC-cceEEEEeCCCCCCCCCCC-CCCCcEEEEEcCCcC--ccccCccCCCCCccEEE
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCSS-VKEIVVVWNKGEPPKLSDL-DSAVPVRIRVEKQNS--LNNRFKLDPLIKTRGVL 633 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p~-v~kIvVVWn~~~pP~~~~~-~s~vPVrv~~~~~NS--LNNRF~P~~~I~T~AVL 633 (802)
|+|.+|+ |...|.+.++.+.+... -.+|+|+=++...+..... .....++++..+.|. -..|=.-.....++-|+
T Consensus 1 vii~~~~-~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~~~~~~i~ 79 (166)
T cd04186 1 IIIVNYN-SLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFPEVRLIRNGENLGFGAGNNQGIREAKGDYVL 79 (166)
T ss_pred CEEEecC-CHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCCCeEEEecCCCcChHHHhhHHHhhCCCCEEE
Confidence 5788998 57888888988876543 3355554333332221111 111136666554432 23333334556899999
Q ss_pred EecCCcccCHHHHHHHHHHHhhCCCcee
Q 045656 634 ELDDDIMMTCDDIERGFQVWRQHPDRIV 661 (802)
Q Consensus 634 slDDDv~l~~deLeFAF~vWr~~PdRLV 661 (802)
.+|||..++++.++...+.=+++|+-.+
T Consensus 80 ~~D~D~~~~~~~l~~~~~~~~~~~~~~~ 107 (166)
T cd04186 80 LLNPDTVVEPGALLELLDAAEQDPDVGI 107 (166)
T ss_pred EECCCcEECccHHHHHHHHHHhCCCceE
Confidence 9999999999988887776666665533
No 99
>COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]
Probab=91.85 E-value=1.5 Score=51.32 Aligned_cols=89 Identities=26% Similarity=0.451 Sum_probs=61.4
Q ss_pred EEECCEEEEEEEee--eccCCCceEE-EEEEeCCCCCceE--eeeeecCC----CceeeeE-EEEeCCEEEEE--eCC-C
Q 045656 194 YLQGNDLYLFYETK--NSITMQGDIG-VAKSVDKGATWQQ--LGIALDED----WHLSFPY-VFDYHGQIYMM--PES-R 260 (802)
Q Consensus 194 l~~~g~~ylF~E~~--~~~~~~G~I~-va~S~D~g~tw~~--~gvvLde~----~HLSyP~-VF~~dG~iYMi--PEs-s 260 (802)
+..++...+||+.- +....+.... +|.|.| +.++.. ..++++.| -|+..|. |+..+|++||| .++ .
T Consensus 107 V~~~~~l~lfytg~v~~~~~~r~~~Q~iA~s~d-g~~f~K~~~~~i~~~p~~~t~hFRDPKv~w~~~~~~~~mlgAq~~~ 185 (486)
T COG1621 107 VVDDGNLSLFYTGNVRDSNGIRQQTQCIAYSED-GGTFEKYSGNPIIDQPEGYTPHFRDPKVVWDEGGKWWMMLGAQGED 185 (486)
T ss_pred EEeCCcEEEEEccceeccCCcceeEEEEEEEcC-CCceEeccCCceecCCCcccccCCCCcccccCCCcEEEEEEEecCC
Confidence 46788999999942 2222333333 466667 555555 44666554 4999999 67889999999 333 4
Q ss_pred CCCeeEEEEeccCCcCceeeeecc
Q 045656 261 AKGEVRLYRAVNFPLEWKLEKIIM 284 (802)
Q Consensus 261 ~sg~l~LYra~~FP~~We~~~~Ll 284 (802)
..|++.||++.+. .+|.....+.
T Consensus 186 ~~g~i~lY~S~DL-~~W~~~g~~~ 208 (486)
T COG1621 186 LKGTILLYESDDL-KNWQFTGEFG 208 (486)
T ss_pred CCceEEEEeCCCc-cCcEEEEeec
Confidence 4579999999884 7899877643
No 100
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=91.73 E-value=0.14 Score=51.87 Aligned_cols=110 Identities=18% Similarity=0.129 Sum_probs=57.9
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCCCCcc-eEEEEeCCCCCCCCCCC-----C-CCCcEEEEEcCCcC-----ccccCc
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRCSSVK-EIVVVWNKGEPPKLSDL-----D-SAVPVRIRVEKQNS-----LNNRFK 622 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~p~v~-kIvVVWn~~~pP~~~~~-----~-s~vPVrv~~~~~NS-----LNNRF~ 622 (802)
+.||+|-+|+ +...|.+.|+.+.+..+-+ +|+||=|+...+..... . ....|+++..+.|. -.++-.
T Consensus 2 ~v~Vvip~~~-~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~ 80 (228)
T PF13641_consen 2 RVSVVIPAYN-EDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNE 80 (228)
T ss_dssp -EEEE--BSS--HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHH
T ss_pred EEEEEEEecC-CHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHH
Confidence 4799999998 5567888898888764433 33443344333322211 1 14567877665422 111222
Q ss_pred cCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceeeccc
Q 045656 623 LDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYP 665 (802)
Q Consensus 623 P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~ 665 (802)
-...+++|-|+.+|||+.++++-|+...+..+...-.+||-..
T Consensus 81 ~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~ 123 (228)
T PF13641_consen 81 ALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPV 123 (228)
T ss_dssp HHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEE
T ss_pred HHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeE
Confidence 2335679999999999999999999988888333344666333
No 101
>KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism]
Probab=91.61 E-value=0.98 Score=52.70 Aligned_cols=147 Identities=22% Similarity=0.341 Sum_probs=89.0
Q ss_pred CceeeCeeeEEECCEEEEEEEeeeccCCCceE--EEEEEeCCCCCceEeeeeecCCC--cee----eeEEEEeCCEEEEE
Q 045656 185 SNFVADPFFYLQGNDLYLFYETKNSITMQGDI--GVAKSVDKGATWQQLGIALDEDW--HLS----FPYVFDYHGQIYMM 256 (802)
Q Consensus 185 ~~F~ADPFll~~~g~~ylF~E~~~~~~~~G~I--~va~S~D~g~tw~~~gvvLde~~--HLS----yP~VF~~dG~iYMi 256 (802)
..|+-|| +.++|.|+|||--=.+..-=|+| ++++|.| +.+|+.+.++|-..- -.+ =--++..+|..-|+
T Consensus 59 k~wMN~P--~~ykG~yHLFyQyNP~gavwg~ivWGHavSkD-LinW~~lp~Ai~Ps~~~ding~wSGSati~~~~~~vil 135 (571)
T KOG0228|consen 59 KGWMNDP--MYYKGKYHLFYQYNPKGAVWGNIVWGHAVSKD-LINWEALPPAIAPSEWFDINGCWSGSATIDPNNSPVIL 135 (571)
T ss_pred cccccCc--cccCcEEEEEEecCCCCceeeeeEeeeecchh-hccccccCcccCCCCccccCccccceEEEccCCCeEEE
Confidence 4699999 77899999999742222223444 5778877 999999999885433 222 22356666665555
Q ss_pred eCC--CCCCeeEEEEecc---CC--cCceeee--eccC---------CCccCCEEEEE--CCEEEEEEeCCCCCCCCCCC
Q 045656 257 PES--RAKGEVRLYRAVN---FP--LEWKLEK--IIMK---------KPLVDPFMINH--DGQYWLFGSDHSGFGTTQNG 316 (802)
Q Consensus 257 PEs--s~sg~l~LYra~~---FP--~~We~~~--~Ll~---------~~~vDatI~~~--dG~wwLF~S~~~~~g~~~n~ 316 (802)
-.. ...+.+.+|.... -| ..|.+.. +++. ...=||+.+.+ +|+|.|..... .+..
T Consensus 136 ytg~d~~~rqVqn~a~p~d~sdp~l~~w~k~~gnp~~~p~~V~~in~s~FRDPttaW~~~dgkWrm~vgsk-----~~q~ 210 (571)
T KOG0228|consen 136 YTGIDPNNRQVQNYAYPKDVSDPQLIAWSKDGGNPFMKPDKVLGINSSQFRDPTTAWFGQDGKWRMTVGSK-----IKQR 210 (571)
T ss_pred ecccCcCceEEEEEeccCCCCchhhheeecCCCceeeccccccCCChhhccCCceeeecCCCcEEEEEEee-----cCcc
Confidence 322 2235555655321 11 1365432 1111 13789999998 89999988432 1233
Q ss_pred cEEEEEEcCCCCCCeeCCCCCeee
Q 045656 317 QLEIWYSSSPFGPWKPHKKNPIYN 340 (802)
Q Consensus 317 ~L~i~~AdSplGPW~~hp~NPI~~ 340 (802)
.+.+.|+..-+-.|++++ .|+..
T Consensus 211 g~a~~Y~S~Df~~W~k~~-~~~h~ 233 (571)
T KOG0228|consen 211 GKAIIYSSDDFKHWTKSS-VPLHS 233 (571)
T ss_pred ceEEEEeccchhhhhccc-ccccc
Confidence 555556555677899887 35443
No 102
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=91.36 E-value=0.85 Score=48.34 Aligned_cols=162 Identities=15% Similarity=0.211 Sum_probs=89.7
Q ss_pred ecccChhhHHHHHHHhcCCCCcceEEEEeCCCCCC-CCCC-CCCCCcEEEEEcCCcC-c----cccCccCCCCCccEEEE
Q 045656 562 TFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPP-KLSD-LDSAVPVRIRVEKQNS-L----NNRFKLDPLIKTRGVLE 634 (802)
Q Consensus 562 Ty~~R~~~L~~~v~hya~~p~v~kIvVVWn~~~pP-~~~~-~~s~vPVrv~~~~~NS-L----NNRF~P~~~I~T~AVLs 634 (802)
||+|....|+..|+.+.+- ..+|+||=|+.... .... ......|+++..+.|. + |.=+.--.+-.+|.|+.
T Consensus 2 tyn~~~~~l~~~l~sl~~q--~~~iiVVDN~S~~~~~~~~~~~~~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~ 79 (281)
T TIGR01556 2 TFNPDLEHLGELITSLPKQ--VDRIIAVDNSPHSDQPLKNARLRGQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLL 79 (281)
T ss_pred ccCccHHHHHHHHHHHHhc--CCEEEEEECcCCCcHhHHHHhccCCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEE
Confidence 7886678888888887764 35666665543222 1111 2223457788776662 2 11110001126799999
Q ss_pred ecCCcccCHHHHHHHHHHHhhCCCceeecccccccCCCC-Cccccee----------ccc--Ccccceeeccceeeehhh
Q 045656 635 LDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLVNGSPL-RYRGEKY----------ARR--HKGYNMILTGAAFVDSQI 701 (802)
Q Consensus 635 lDDDv~l~~deLeFAF~vWr~~PdRLVGF~~R~h~~~~~-~y~~~~y----------~~~--~~~YSMVLTgaAF~Hr~Y 701 (802)
+|||..++.+.|+...+.+.+.+..+.-.-||..+.... .+..... ... ...-+.+++++++++++.
T Consensus 80 lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~li~~~~ 159 (281)
T TIGR01556 80 LDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTTPQKTSFLISSGCLITREV 159 (281)
T ss_pred ECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCCceeccEEEcCcceeeHHH
Confidence 999999999999999999988764544444554321111 1110000 000 112345677778888875
Q ss_pred hhhhccchhHHHHHHhhcc--CCCchhhHHHHHHHH
Q 045656 702 AFNRYWSEQAKAGREFVDK--FFNCEDVLLNYLYAN 735 (802)
Q Consensus 702 ~~~~Y~~~~p~~iR~~VDe--~~NCEDIaMNFLVS~ 735 (802)
+...- .-|+ ...+||.-+.+-+..
T Consensus 160 -~~~iG---------~fde~~fi~~~D~e~~~R~~~ 185 (281)
T TIGR01556 160 -YQRLG---------MMDEELFIDHVDTEWSLRAQN 185 (281)
T ss_pred -HHHhC---------CccHhhcccchHHHHHHHHHH
Confidence 32210 0122 235788888776554
No 103
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=91.27 E-value=1.1 Score=50.45 Aligned_cols=116 Identities=10% Similarity=-0.011 Sum_probs=74.2
Q ss_pred CCceEEEEEecccChhhHHHHHHHhcCC--CCcceEEEEeCCCCCCCCC---CC----CCCCcEEEEEcCCcCccc----
Q 045656 553 YSQFTMLTMTFDARLWNLKMYVKHYSRC--SSVKEIVVVWNKGEPPKLS---DL----DSAVPVRIRVEKQNSLNN---- 619 (802)
Q Consensus 553 ~~qFTvvI~Ty~~R~~~L~~~v~hya~~--p~v~kIvVVWn~~~pP~~~---~~----~s~vPVrv~~~~~NSLNN---- 619 (802)
....+|||-+|+ ....|.+.++.+.+. |.--||+||=++....... .+ +....++++..+.+.-+.
T Consensus 39 ~p~VSVIIpa~N-e~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~ 117 (384)
T TIGR03469 39 WPAVVAVVPARN-EADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKL 117 (384)
T ss_pred CCCEEEEEecCC-cHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchH
Confidence 446999999998 567888888888553 3234888884433222111 11 111246666432211110
Q ss_pred --cCccCCCCC-----ccEEEEecCCcccCHHHHHHHHHHHhhCCCceeeccccccc
Q 045656 620 --RFKLDPLIK-----TRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLVN 669 (802)
Q Consensus 620 --RF~P~~~I~-----T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~R~h~ 669 (802)
.-.-....+ .|-|+.+|+|+.++++.|+...+..++.+..+|+..+|...
T Consensus 118 ~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~ 174 (384)
T TIGR03469 118 WAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRC 174 (384)
T ss_pred HHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccC
Confidence 000112233 89999999999999999999999988888788888777643
No 104
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=91.26 E-value=0.4 Score=47.39 Aligned_cols=106 Identities=16% Similarity=0.172 Sum_probs=70.9
Q ss_pred EEEEEeccc-ChhhHHHHHHHhcCCCC-cceEEEEeCCCCCCCCCC----CCCCCcEEEEEcCCcC--ccccCccCCCCC
Q 045656 557 TMLTMTFDA-RLWNLKMYVKHYSRCSS-VKEIVVVWNKGEPPKLSD----LDSAVPVRIRVEKQNS--LNNRFKLDPLIK 628 (802)
Q Consensus 557 TvvI~Ty~~-R~~~L~~~v~hya~~p~-v~kIvVVWn~~~pP~~~~----~~s~vPVrv~~~~~NS--LNNRF~P~~~I~ 628 (802)
||+|-||+. +...|.+.|+.+.+-.. -.+|+||=++...+.... +....|++++..+.|. -.+|-.-...-+
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~ 80 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKNRGLGKALNEGLKHCT 80 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCccccHHHHHHHHHHhcC
Confidence 689999974 23578888888765332 357777655543332211 2233468887766653 233333334567
Q ss_pred ccEEEEecCCcccCHHHHHHHHHHHhhCCCc-eee
Q 045656 629 TRGVLELDDDIMMTCDDIERGFQVWRQHPDR-IVG 662 (802)
Q Consensus 629 T~AVLslDDDv~l~~deLeFAF~vWr~~PdR-LVG 662 (802)
+|.|+.+|+|..++++.|+...+.++++|+- +|+
T Consensus 81 gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~ 115 (201)
T cd04195 81 YDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVG 115 (201)
T ss_pred CCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEc
Confidence 8999999999999999999999999888754 554
No 105
>PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family consists of the glycosyl hydrolase 68 family (GH68 from CAZY), including several bacterial levansucrase enzymes, and invertase from Zymomonas. Levansucrase (2.4.1.10 from EC), also known as beta-D-fructofuranosyl transferase, catalyses the conversion of sucrose and (2,6-beta-D-fructosyl)(N) to glucose and (2,6-beta-D-fructosyl)(N+1), where other sugars can also act as fructosyl acceptors. Invertase, or extracellular sucrase (3.2.1.26 from EC), catalyses the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.; GO: 0050053 levansucrase activity, 0009758 carbohydrate utilization; PDB: 2YFR_A 2YFT_A 2YFS_A 1W18_A 3OM7_B 3OM4_C 3OM6_D 3OM5_A 3OM2_A 1PT2_A ....
Probab=90.69 E-value=1.2 Score=51.35 Aligned_cols=73 Identities=25% Similarity=0.438 Sum_probs=54.7
Q ss_pred eeeCeeeEEE--CCEEEEEEEeeecc----------------------C---------CCceEEEEEEeCCC-CCceEee
Q 045656 187 FVADPFFYLQ--GNDLYLFYETKNSI----------------------T---------MQGDIGVAKSVDKG-ATWQQLG 232 (802)
Q Consensus 187 F~ADPFll~~--~g~~ylF~E~~~~~----------------------~---------~~G~I~va~S~D~g-~tw~~~g 232 (802)
-|-|||.++. +|+.||+||.--.. . ..|.|+++++.++- ..|+...
T Consensus 209 afRDP~~f~DP~~G~~YLvFEgNtg~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~A~~~ng~iGi~~~~~~~~~~w~~~~ 288 (428)
T PF02435_consen 209 AFRDPHVFEDPEDGKRYLVFEGNTGGERNWANYGGDDLGNVPGDPKLENNDNKSGASYANGAIGIAKLTNDDGTVWELLP 288 (428)
T ss_dssp --EEEEEEEETTTTEEEEEEEEEBSTTSBGGGT-SHHHHHHHHHHHHHHSCCHHHHHH-EEEEEEEEESTTTTSEEEEEE
T ss_pred cccCCeeEECCCCCcEEEEEecccCCCCCccccCccccccccccccccccccccccceecceeeeEEecCCCCCccEEeC
Confidence 3689999988 99999999963221 0 36999999988754 5699888
Q ss_pred eeecC---CCceeeeEEEEeCCEEEEEeCC
Q 045656 233 IALDE---DWHLSFPYVFDYHGQIYMMPES 259 (802)
Q Consensus 233 vvLde---~~HLSyP~VF~~dG~iYMiPEs 259 (802)
++|+- .-.+==|.|+..+|++||.--+
T Consensus 289 PL~~a~~v~de~ERP~iv~~~gkyYLFt~s 318 (428)
T PF02435_consen 289 PLLSANGVNDELERPHIVFMNGKYYLFTIS 318 (428)
T ss_dssp EEEEETTTBS-EEEEEEEEETTEEEEEEEE
T ss_pred cceecccccccccCCcEEEECCEEEEEEEe
Confidence 77654 3457779999999999998543
No 106
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=90.38 E-value=0.77 Score=46.46 Aligned_cols=105 Identities=19% Similarity=0.169 Sum_probs=67.1
Q ss_pred EEEEecccChhhHHHHHHHhcCC--CCcceEEEEeCCCCCCCCC----CCC---CCCcEEEEEcCCcC-----cc-ccCc
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRC--SSVKEIVVVWNKGEPPKLS----DLD---SAVPVRIRVEKQNS-----LN-NRFK 622 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~--p~v~kIvVVWn~~~pP~~~----~~~---s~vPVrv~~~~~NS-----LN-NRF~ 622 (802)
|+|-+|+ +...|.+.|+.+.+- +.--||+|| ++....... .+. ...+++++....+. +. .|=.
T Consensus 1 ViIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiVv-Dd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~ 78 (219)
T cd06913 1 IILPVHN-GEQWLDECLESVLQQDFEGTLELSVF-NDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQ 78 (219)
T ss_pred CEEeecC-cHHHHHHHHHHHHhCCCCCCEEEEEE-eCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHH
Confidence 5889998 567888888887543 322488888 433332211 111 12356655433221 11 1111
Q ss_pred cCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceeecc
Q 045656 623 LDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFY 664 (802)
Q Consensus 623 P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~ 664 (802)
=....+.|-|+.+|+|..+.++.|+..+..+.++|+.+||..
T Consensus 79 g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 120 (219)
T cd06913 79 AIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQ 120 (219)
T ss_pred HHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEE
Confidence 234557899999999999999999988899989999888853
No 107
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=90.16 E-value=0.58 Score=48.32 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=65.3
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCCCCcceEEEEeCCCCCCCCCCCCCCCcEEEEEcCCcCc-cccCccCCCCCccEEE
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLSDLDSAVPVRIRVEKQNSL-NNRFKLDPLIKTRGVL 633 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~p~v~kIvVVWn~~~pP~~~~~~s~vPVrv~~~~~NSL-NNRF~P~~~I~T~AVL 633 (802)
++|++|.||+ ....|.+.|+++... ..||+||=|....... +......++|+..+.... ..|=.-....++|-|+
T Consensus 1 ~isvii~~~N-e~~~l~~~l~sl~~~--~~eiivvD~gStD~t~-~i~~~~~~~v~~~~~~g~~~~~n~~~~~a~~d~vl 76 (229)
T cd02511 1 TLSVVIITKN-EERNIERCLESVKWA--VDEIIVVDSGSTDRTV-EIAKEYGAKVYQRWWDGFGAQRNFALELATNDWVL 76 (229)
T ss_pred CEEEEEEeCC-cHHHHHHHHHHHhcc--cCEEEEEeCCCCccHH-HHHHHcCCEEEECCCCChHHHHHHHHHhCCCCEEE
Confidence 4799999998 567788888888654 3589988775432211 111112345554422111 1122223467889999
Q ss_pred EecCCcccCHHHHHHHHHHHhhCCC
Q 045656 634 ELDDDIMMTCDDIERGFQVWRQHPD 658 (802)
Q Consensus 634 slDDDv~l~~deLeFAF~vWr~~Pd 658 (802)
.+|.|..++++-++...+.-++.|.
T Consensus 77 ~lDaD~~~~~~~~~~l~~~~~~~~~ 101 (229)
T cd02511 77 SLDADERLTPELADEILALLATDDY 101 (229)
T ss_pred EEeCCcCcCHHHHHHHHHHHhCCCC
Confidence 9999999999999988877777776
No 108
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=89.91 E-value=7.5 Score=43.13 Aligned_cols=165 Identities=16% Similarity=0.253 Sum_probs=107.6
Q ss_pred eEEEEeCCEEEEEe-------CC-CCCCeeEEEEeccCCcCceeee--eccC-C------CccCCEEEEECCEEEEEEeC
Q 045656 244 PYVFDYHGQIYMMP-------ES-RAKGEVRLYRAVNFPLEWKLEK--IIMK-K------PLVDPFMINHDGQYWLFGSD 306 (802)
Q Consensus 244 P~VF~~dG~iYMiP-------Es-s~sg~l~LYra~~FP~~We~~~--~Ll~-~------~~vDatI~~~dG~wwLF~S~ 306 (802)
|-|...++++.|++ |. +.-+++.+-+..+--.+|+.+. ++.. + .++||=+++.||+|+|.||.
T Consensus 34 pav~~~~~~~~~l~Rv~~~yye~~~~~s~l~ia~s~dgi~~~~~e~ep~~~P~~~~~e~~G~EDPRvt~I~~~y~mtYTa 113 (314)
T COG2152 34 PAVVLVGGELLLLYRVVEGYYEDHSSISHLRIARSDDGIGEFEIEPEPTLWPANYPYEIYGIEDPRVTKIGGRYYMTYTA 113 (314)
T ss_pred ceeEEECCEEEEEEEEeccccccCccceEEEEEecccCCCceecCCcceEecCCCchhhhcccCceEEEECCEEEEEEEe
Confidence 44555666777764 22 3457788877776655577754 3443 2 49999999999999999998
Q ss_pred CCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccE--EECCeEEEEcccCCCCCC--ceEEEEEecc
Q 045656 307 HSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPF--VYDGNLYRVGQDCAESYG--RRVRTFKVEI 382 (802)
Q Consensus 307 ~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF--~~dGkLyRp~QdC~~~YG--~~L~l~~It~ 382 (802)
....| ....++.+.+.+. |++-. ++..-+ .| .+.+| +.+||+.+..+--...|| ..+++.-..+
T Consensus 114 ~s~~g----~~~~la~t~~f~n-~~rig--~i~~pd----n~-~~~lfP~~~ngk~~~lhr~~~~~~~~~~niwia~S~d 181 (314)
T COG2152 114 YSDKG----PRLALAVTKDFLN-WERIG--AIFPPD----NK-DAALFPKKINGKYALLHRPVLGEYGMKGNIWIAFSPD 181 (314)
T ss_pred cCCCC----cccchhhhhhhhh-hhhcc--cccCCC----CC-CceEeeEEecCcEEEEEeecccccCccCceEEEEcCC
Confidence 53222 2455666666655 87643 333211 12 13333 569999999998888888 7889988888
Q ss_pred CCccceEEec----cccCCCC----CCccccccccCCCCCeEEEEeCccc
Q 045656 383 LTKNEYKELE----GRNAWNG----ARYHHLDAQQLSSGEWIAVMDGDRA 424 (802)
Q Consensus 383 Lt~~~y~E~~----~~~~w~~----~~~Hhld~~~l~~g~~i~vvDG~r~ 424 (802)
|-.|.+..+. ....|.. -+.+.+... .+|+..+-|-+.
T Consensus 182 l~~w~~~~~~l~~~~~~~~d~~KIG~g~~Pikt~----egwLvlyHgv~~ 227 (314)
T COG2152 182 LEHWGIHRKLLGPRMGGWWDELKIGWGTPPIKTE----EGWLVLYHGVDE 227 (314)
T ss_pred ccCCCccceeeccccCCcchhhhccCCCCCcCcc----cceEEEEeeccC
Confidence 8888777666 3334443 234444442 368888887664
No 109
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=89.75 E-value=1.1 Score=46.35 Aligned_cols=110 Identities=11% Similarity=0.076 Sum_probs=66.8
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCCCCc---ceEEEEeCCCCCCCCC----CCC--CCCcEEEEEcCCcC--ccccCcc
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRCSSV---KEIVVVWNKGEPPKLS----DLD--SAVPVRIRVEKQNS--LNNRFKL 623 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~p~v---~kIvVVWn~~~pP~~~----~~~--s~vPVrv~~~~~NS--LNNRF~P 623 (802)
.+||+|-+|+ ....|...|+.+.+..+- -||+||=++. .+... .+. ....|+++....|. -..+=.-
T Consensus 2 ~vsIiIp~~N-e~~~l~~~l~sl~~~~y~~~~~eiivVdd~s-~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g 79 (241)
T cd06427 2 VYTILVPLYK-EAEVLPQLIASLSALDYPRSKLDVKLLLEED-DEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYA 79 (241)
T ss_pred eEEEEEecCC-cHHHHHHHHHHHHhCcCCcccEEEEEEECCC-CchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHH
Confidence 5899999998 456788888888665332 3677774432 22111 111 12334433322220 0011112
Q ss_pred CCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceeecccc
Q 045656 624 DPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPR 666 (802)
Q Consensus 624 ~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~R 666 (802)
....+.|-|+.+|+|..++++.|+...+.+++....++...++
T Consensus 80 ~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 80 LAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred HHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 2356789999999999999999999999998764555444344
No 110
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=89.07 E-value=0.65 Score=47.43 Aligned_cols=101 Identities=12% Similarity=0.112 Sum_probs=61.3
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCCCCc---ceEEEEeCCCCCCCCC---CC-----CCCCcEEEEEcCCc-C--cccc
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRCSSV---KEIVVVWNKGEPPKLS---DL-----DSAVPVRIRVEKQN-S--LNNR 620 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~p~v---~kIvVVWn~~~pP~~~---~~-----~s~vPVrv~~~~~N-S--LNNR 620 (802)
.+||||-+|+ ....|.+.|+.+.+..+. -+|+|| ++....... .+ ...++|+++....| . -.++
T Consensus 2 ~vSViIp~yN-e~~~l~~~L~sl~~q~~~~~~~eIiVv-D~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~ 79 (232)
T cd06437 2 MVTVQLPVFN-EKYVVERLIEAACALDYPKDRLEIQVL-DDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGAL 79 (232)
T ss_pred ceEEEEecCC-cHHHHHHHHHHHHhcCCCccceEEEEE-ECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHH
Confidence 4899999998 456788888888654332 367776 332211111 11 12467776654332 1 1111
Q ss_pred CccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCC
Q 045656 621 FKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPD 658 (802)
Q Consensus 621 F~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~Pd 658 (802)
=.=....+.|-|+.+|.|..++++-|+-... ..++|+
T Consensus 80 n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~-~~~~~~ 116 (232)
T cd06437 80 AEGMKVAKGEYVAIFDADFVPPPDFLQKTPP-YFADPK 116 (232)
T ss_pred HHHHHhCCCCEEEEEcCCCCCChHHHHHhhh-hhcCCC
Confidence 1122456899999999999999999988433 334554
No 111
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.73 E-value=1.3 Score=44.26 Aligned_cols=104 Identities=12% Similarity=0.029 Sum_probs=64.0
Q ss_pred EEEEecccChhhHHHHHHHhcCCCC---cceEEEEeCCCCCCCCCCC-----CCCCcEEEEEcCCcCccccCc------c
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCSS---VKEIVVVWNKGEPPKLSDL-----DSAVPVRIRVEKQNSLNNRFK------L 623 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p~---v~kIvVVWn~~~pP~~~~~-----~s~vPVrv~~~~~NSLNNRF~------P 623 (802)
|+|-||+ +...|.+.|+.+.+-.. .-||+||-++......... .....|+++..+. -.|+.+ -
T Consensus 1 viip~~n-~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~--~~~~g~~~a~n~g 77 (229)
T cd04192 1 VVIAARN-EAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSR--VSISGKKNALTTA 77 (229)
T ss_pred CEEEecC-cHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccC--cccchhHHHHHHH
Confidence 5789998 56778888888754322 2589999876533222111 1234455554432 111111 1
Q ss_pred CCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceeecc
Q 045656 624 DPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFY 664 (802)
Q Consensus 624 ~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~ 664 (802)
.....+|-|+.+|+|..+.++-|+...+.-++++.-+|...
T Consensus 78 ~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 118 (229)
T cd04192 78 IKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGP 118 (229)
T ss_pred HHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeee
Confidence 23467899999999999999999988876565554444433
No 112
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=87.69 E-value=0.7 Score=44.78 Aligned_cols=106 Identities=16% Similarity=0.072 Sum_probs=67.4
Q ss_pred EEEEecccChhhHHHHHHHhcCCC---CcceEEEEeCCCCCCCCCC---C-CCCCcEEEEEcCCcC--ccccCccCCCCC
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCS---SVKEIVVVWNKGEPPKLSD---L-DSAVPVRIRVEKQNS--LNNRFKLDPLIK 628 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p---~v~kIvVVWn~~~pP~~~~---~-~s~vPVrv~~~~~NS--LNNRF~P~~~I~ 628 (802)
|+|.+|+ +...|++.++.+.+.. ...||+||=|+........ + .....++++..+.|. -.++=.-....+
T Consensus 1 iii~~~n-~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~ 79 (185)
T cd04179 1 VVIPAYN-EEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAAR 79 (185)
T ss_pred CeecccC-hHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHHhc
Confidence 5788997 5567777788776653 3678888866644322211 1 111234566555552 222223335567
Q ss_pred ccEEEEecCCcccCHHHHHHHHHH-HhhCCCceeecc
Q 045656 629 TRGVLELDDDIMMTCDDIERGFQV-WRQHPDRIVGFY 664 (802)
Q Consensus 629 T~AVLslDDDv~l~~deLeFAF~v-Wr~~PdRLVGF~ 664 (802)
+|.|+.+|+|..++++.|+...+. .+..++=++|..
T Consensus 80 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~ 116 (185)
T cd04179 80 GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSR 116 (185)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEe
Confidence 799999999999999999999888 444555566653
No 113
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=86.97 E-value=4.5 Score=39.97 Aligned_cols=109 Identities=13% Similarity=0.054 Sum_probs=67.7
Q ss_pred EEEEEecccChhhHHHHHHHhcCCC-CcceEEEEeCCCCCCCCC---CCC--CCCcEEEEEcCCcC--ccccCccCCCCC
Q 045656 557 TMLTMTFDARLWNLKMYVKHYSRCS-SVKEIVVVWNKGEPPKLS---DLD--SAVPVRIRVEKQNS--LNNRFKLDPLIK 628 (802)
Q Consensus 557 TvvI~Ty~~R~~~L~~~v~hya~~p-~v~kIvVVWn~~~pP~~~---~~~--s~vPVrv~~~~~NS--LNNRF~P~~~I~ 628 (802)
+|+|-||+ +...|.+.|+.+.+.. .--||+||=++....... .+. ....+++...+.|. -.++-.-....+
T Consensus 1 sIvIp~yn-~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~ 79 (214)
T cd04196 1 AVLMATYN-GEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAAD 79 (214)
T ss_pred CEEEEecC-cHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCC
Confidence 58999998 5567888787765432 134888883333222111 111 12456666665552 222222245678
Q ss_pred ccEEEEecCCcccCHHHHHHHHHHHhhCCCc-eeecccc
Q 045656 629 TRGVLELDDDIMMTCDDIERGFQVWRQHPDR-IVGFYPR 666 (802)
Q Consensus 629 T~AVLslDDDv~l~~deLeFAF~vWr~~PdR-LVGF~~R 666 (802)
+|-|+.+|+|..+.++.|+-..+...+.|.- +++...+
T Consensus 80 g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 118 (214)
T cd04196 80 GDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLE 118 (214)
T ss_pred CCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcE
Confidence 9999999999999999999888876666654 4444333
No 114
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=86.73 E-value=1.1 Score=44.82 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=64.4
Q ss_pred EEEEecccChhhHHHHHHHhcCCC--CcceEEEEeCCCCCCCCCC----C-CCCCcEEEEEcCCc-CccccC-ccCCCCC
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCS--SVKEIVVVWNKGEPPKLSD----L-DSAVPVRIRVEKQN-SLNNRF-KLDPLIK 628 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p--~v~kIvVVWn~~~pP~~~~----~-~s~vPVrv~~~~~N-SLNNRF-~P~~~I~ 628 (802)
|||.+|+ +...|.++|+.+.+.. .--||+|| ++..+..... + .....++++..+.| ...+.+ .=....+
T Consensus 1 ViIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiiV-Dd~S~d~t~~~~~~~~~~~~~i~~~~~~~n~G~~~a~n~g~~~a~ 78 (224)
T cd06442 1 IIIPTYN-ERENIPELIERLDAALKGIDYEIIVV-DDNSPDGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGFKAAR 78 (224)
T ss_pred CeEeccc-hhhhHHHHHHHHHHhhcCCCeEEEEE-eCCCCCChHHHHHHHHHhCCceEEEecCCCCChHHHHHHHHHHcC
Confidence 5889998 5667888787775533 34678888 4443322211 2 11223566655554 222211 2234577
Q ss_pred ccEEEEecCCcccCHHHHHHHHHHHhhC-CCceee
Q 045656 629 TRGVLELDDDIMMTCDDIERGFQVWRQH-PDRIVG 662 (802)
Q Consensus 629 T~AVLslDDDv~l~~deLeFAF~vWr~~-PdRLVG 662 (802)
+|.|+.+|+|..++++.|+...+.+.+. ++=++|
T Consensus 79 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 79 GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 8999999999999999999999986554 444444
No 115
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=84.74 E-value=1.5 Score=42.88 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=60.7
Q ss_pred EEEEecccChhhHHHHHHHhcC----CCCcceEEEEeCCCCCCCCC---CCCC-CCcEEEEEcCCcC-c-cccCccCCCC
Q 045656 558 MLTMTFDARLWNLKMYVKHYSR----CSSVKEIVVVWNKGEPPKLS---DLDS-AVPVRIRVEKQNS-L-NNRFKLDPLI 627 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~----~p~v~kIvVVWn~~~pP~~~---~~~s-~vPVrv~~~~~NS-L-NNRF~P~~~I 627 (802)
|+|-||+ +...|..+++.+.+ ...--||+||=++....... .+.. ...|+++...+|. . +.+-.-....
T Consensus 1 viIp~~n-~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~~~~n~G~~~a~n~g~~~a 79 (181)
T cd04187 1 IVVPVYN-EEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVIRLSRNFGQQAALLAGLDHA 79 (181)
T ss_pred CEEeecC-chhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEecCCCCcHHHHHHHHHhc
Confidence 5789998 44555555554432 22334888884433221111 1111 2236776665552 1 1111122356
Q ss_pred CccEEEEecCCcccCHHHHHHHHHHHhhCCCceeec
Q 045656 628 KTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGF 663 (802)
Q Consensus 628 ~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF 663 (802)
+.|.|+.+|+|..++.+.|+...+...+..+-+.|.
T Consensus 80 ~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~v~g~ 115 (181)
T cd04187 80 RGDAVITMDADLQDPPELIPEMLAKWEEGYDVVYGV 115 (181)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHhCCCcEEEEE
Confidence 779999999999999999999999854444444443
No 116
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=84.09 E-value=3 Score=46.68 Aligned_cols=112 Identities=14% Similarity=0.192 Sum_probs=68.3
Q ss_pred CCceEEEEEecccChhhHHHHHHHhcCCCCc-ceEEEEeCCCCCCCCC---CCC---CCCcEEEEEcCCc-----Ccccc
Q 045656 553 YSQFTMLTMTFDARLWNLKMYVKHYSRCSSV-KEIVVVWNKGEPPKLS---DLD---SAVPVRIRVEKQN-----SLNNR 620 (802)
Q Consensus 553 ~~qFTvvI~Ty~~R~~~L~~~v~hya~~p~v-~kIvVVWn~~~pP~~~---~~~---s~vPVrv~~~~~N-----SLNNR 620 (802)
....||+|-+|+ ....|...|+.+.+-.+= -||+|+=++...+... .+. ..+.|+++..+++ +.+|-
T Consensus 40 ~p~VSViiP~~n-ee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l 118 (373)
T TIGR03472 40 WPPVSVLKPLHG-DEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNL 118 (373)
T ss_pred CCCeEEEEECCC-CChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHH
Confidence 456999999997 456788888877554322 5777762222222111 111 1345777655432 12221
Q ss_pred CccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCC-ceeecccc
Q 045656 621 FKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPD-RIVGFYPR 666 (802)
Q Consensus 621 F~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~Pd-RLVGF~~R 666 (802)
..-.+.-+.|-|+.+|+|+.++++-|+......+ +|+ -+|+-.++
T Consensus 119 ~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~-~~~v~~V~~~~~ 164 (373)
T TIGR03472 119 INMLPHARHDILVIADSDISVGPDYLRQVVAPLA-DPDVGLVTCLYR 164 (373)
T ss_pred HHHHHhccCCEEEEECCCCCcChhHHHHHHHHhc-CCCcceEecccc
Confidence 1123567899999999999999999998877664 554 36644343
No 117
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=84.07 E-value=3.2 Score=45.95 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=66.4
Q ss_pred CceEEEEEecccChhhHHHHHHHh----cCCCCcceEEEEeCCCCCCCCCC----C-C-CCCcEEEEEcCCcCc--cccC
Q 045656 554 SQFTMLTMTFDARLWNLKMYVKHY----SRCSSVKEIVVVWNKGEPPKLSD----L-D-SAVPVRIRVEKQNSL--NNRF 621 (802)
Q Consensus 554 ~qFTvvI~Ty~~R~~~L~~~v~hy----a~~p~v~kIvVVWn~~~pP~~~~----~-~-s~vPVrv~~~~~NSL--NNRF 621 (802)
.+++|||-+|+ ....|..+++.+ .+.+.--||+|| ++.+.....+ . . ....|+++..++|.= ..+-
T Consensus 6 ~~vSVVIP~yN-E~~~i~~~l~~l~~~~~~~~~~~EIIvV-DDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~ 83 (325)
T PRK10714 6 KKVSVVIPVYN-EQESLPELIRRTTAACESLGKEYEILLI-DDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIM 83 (325)
T ss_pred CeEEEEEcccC-chhhHHHHHHHHHHHHHhCCCCEEEEEE-eCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHH
Confidence 46999999997 344555555443 333333588888 4433322111 1 1 134455554444421 2222
Q ss_pred ccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceeec
Q 045656 622 KLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGF 663 (802)
Q Consensus 622 ~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF 663 (802)
.=...-+.|.|+.+|+|...++++|+...+.|++..| +||-
T Consensus 84 ~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~D-vV~~ 124 (325)
T PRK10714 84 AGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEGYD-VVGT 124 (325)
T ss_pred HHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHhhCC-EEEE
Confidence 2223457899999999999999999999999987766 6654
No 118
>PLN02193 nitrile-specifier protein
Probab=83.94 E-value=93 Score=36.29 Aligned_cols=179 Identities=13% Similarity=0.178 Sum_probs=95.6
Q ss_pred eCeeeEEECCEEEEEEEeeeccCCCceEEEEEEeC----CCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeC-CCCCC
Q 045656 189 ADPFFYLQGNDLYLFYETKNSITMQGDIGVAKSVD----KGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPE-SRAKG 263 (802)
Q Consensus 189 ADPFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D----~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPE-ss~sg 263 (802)
..||.+ .++++..|...-.. .--.|++..+.- ...+|......-+.|..-+.--....++.+|++=- .....
T Consensus 113 g~~f~~-~~~~ivgf~G~~~~--~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~ 189 (470)
T PLN02193 113 GVKFVL-QGGKIVGFHGRSTD--VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQ 189 (470)
T ss_pred CCEEEE-cCCeEEEEeccCCC--cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCC
Confidence 467887 68999998854211 233566665431 12578765432122322233345566889999821 11111
Q ss_pred ee--EEEEeccCCcCceeeeec--cCC-CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCe
Q 045656 264 EV--RLYRAVNFPLEWKLEKII--MKK-PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPI 338 (802)
Q Consensus 264 ~l--~LYra~~FP~~We~~~~L--l~~-~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI 338 (802)
.+ .+|+...--.+|+..+.. +.. .....++...+++-|+|.-.. +......+.+| |.....|+.-+..+
T Consensus 190 ~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~---~~~~~ndv~~y--D~~t~~W~~l~~~~- 263 (470)
T PLN02193 190 PIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRD---ASRQYNGFYSF--DTTTNEWKLLTPVE- 263 (470)
T ss_pred CeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCC---CCCCCccEEEE--ECCCCEEEEcCcCC-
Confidence 11 255543333579753321 111 235778888999999998421 11112244443 54467798644221
Q ss_pred eeCCCCCCcccCCccEEECCeEEEEcccCCCCCCceEEEEEe
Q 045656 339 YNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRVRTFKV 380 (802)
Q Consensus 339 ~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~I 380 (802)
.. ..+|.+......++++|.+.-.....+-..+..+.+
T Consensus 264 -~~---P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~ 301 (470)
T PLN02193 264 -EG---PTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNI 301 (470)
T ss_pred -CC---CCCccceEEEEECCEEEEECCCCCCCCcceEEEEEC
Confidence 11 136777777788999999886432223233444433
No 119
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=82.95 E-value=1.5 Score=39.57 Aligned_cols=101 Identities=17% Similarity=0.083 Sum_probs=60.9
Q ss_pred EEEEecccChhhHHHHHHHhcCCCC-cceEEEEeCCCCCCCCCCC----CCCCcEEEEEcCCc--CccccCccCCCCCcc
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCSS-VKEIVVVWNKGEPPKLSDL----DSAVPVRIRVEKQN--SLNNRFKLDPLIKTR 630 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p~-v~kIvVVWn~~~pP~~~~~----~s~vPVrv~~~~~N--SLNNRF~P~~~I~T~ 630 (802)
++|.+|. +...|...++++.+... ..+|+|+=|.......... ....++..+....+ .-.++-.-.....+|
T Consensus 1 iii~~~~-~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d 79 (156)
T cd00761 1 VIIPAYN-EEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAARGE 79 (156)
T ss_pred CEEeecC-cHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHhcCC
Confidence 4788887 56778888888877753 4567766555443322211 11123333333332 222233333445899
Q ss_pred EEEEecCCcccCHHHHHHHHHHHhhCCCc
Q 045656 631 GVLELDDDIMMTCDDIERGFQVWRQHPDR 659 (802)
Q Consensus 631 AVLslDDDv~l~~deLeFAF~vWr~~PdR 659 (802)
-|+.+|+|..+..+.++........+++.
T Consensus 80 ~v~~~d~D~~~~~~~~~~~~~~~~~~~~~ 108 (156)
T cd00761 80 YILFLDADDLLLPDWLERLVAELLADPEA 108 (156)
T ss_pred EEEEECCCCccCccHHHHHHHHHhcCCCc
Confidence 99999999999999888764555555543
No 120
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=81.88 E-value=4.2 Score=40.61 Aligned_cols=97 Identities=18% Similarity=0.143 Sum_probs=59.8
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCC--CCcceEEEEeCCCCCCCCC---CC---CCCCcEEEEEcCCc-Ccc----ccC
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRC--SSVKEIVVVWNKGEPPKLS---DL---DSAVPVRIRVEKQN-SLN----NRF 621 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~--p~v~kIvVVWn~~~pP~~~---~~---~s~vPVrv~~~~~N-SLN----NRF 621 (802)
.+||||-+|+ ....|.+.|+.+.+- +. -||+||=++....... .+ .....++++...+| ..+ ++=
T Consensus 2 ~vsviip~~n-~~~~l~~~L~sl~~q~~~~-~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n 79 (196)
T cd02520 2 GVSILKPLCG-VDPNLYENLESFFQQDYPK-YEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLI 79 (196)
T ss_pred CeEEEEecCC-CCccHHHHHHHHHhccCCC-eEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHH
Confidence 3799999997 445677778877542 33 4777765554322111 11 11234666655544 221 111
Q ss_pred ccCCCCCccEEEEecCCcccCHHHHHHHHHHH
Q 045656 622 KLDPLIKTRGVLELDDDIMMTCDDIERGFQVW 653 (802)
Q Consensus 622 ~P~~~I~T~AVLslDDDv~l~~deLeFAF~vW 653 (802)
.-....++|.|+.+|+|..++++-|+...+.-
T Consensus 80 ~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 80 KGYEEARYDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred HHHHhCCCCEEEEECCCceEChhHHHHHHHHh
Confidence 12344678999999999999999998777653
No 121
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=81.18 E-value=3.6 Score=39.85 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=55.3
Q ss_pred EEEEecccChhhHHHHHHHhcCCCCc-ceEEEEeCCCCCCCCCC----CC--CCCcEEEEEcCCcCcc---ccCccCCCC
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCSSV-KEIVVVWNKGEPPKLSD----LD--SAVPVRIRVEKQNSLN---NRFKLDPLI 627 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p~v-~kIvVVWn~~~pP~~~~----~~--s~vPVrv~~~~~NSLN---NRF~P~~~I 627 (802)
|||-+|+ +...|++.|+.+.+-... .||+| .++..+..... +. ...+++.+....+... +|=.-.+..
T Consensus 1 ivip~~n-~~~~l~~~l~sl~~q~~~~~eiiv-vdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a 78 (182)
T cd06420 1 LIITTYN-RPEALELVLKSVLNQSILPFEVII-ADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAA 78 (182)
T ss_pred CEEeecC-ChHHHHHHHHHHHhccCCCCEEEE-EeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHh
Confidence 5789998 567789889988664333 36555 46554332211 11 1233433333322110 111112346
Q ss_pred CccEEEEecCCcccCHHHHHHHHHHH
Q 045656 628 KTRGVLELDDDIMMTCDDIERGFQVW 653 (802)
Q Consensus 628 ~T~AVLslDDDv~l~~deLeFAF~vW 653 (802)
+.|-|+.+|+|..++.+-|+...+.-
T Consensus 79 ~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 79 KGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred cCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 78999999999999999888776654
No 122
>PHA03098 kelch-like protein; Provisional
Probab=81.14 E-value=1.1e+02 Score=35.87 Aligned_cols=169 Identities=14% Similarity=0.178 Sum_probs=90.7
Q ss_pred eEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEE---eCCCC-CCeeEEE
Q 045656 193 FYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMM---PESRA-KGEVRLY 268 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMi---PEss~-sg~l~LY 268 (802)
....++++|++--.-. ......+.+. +....+|+.... + +..-+..-+...+|++|++ .+... ...+..|
T Consensus 338 ~~~~~~~lyv~GG~~~-~~~~~~v~~y--d~~~~~W~~~~~-l--p~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~y 411 (534)
T PHA03098 338 VTVFNNRIYVIGGIYN-SISLNTVESW--KPGESKWREEPP-L--IFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECF 411 (534)
T ss_pred EEEECCEEEEEeCCCC-CEecceEEEE--cCCCCceeeCCC-c--CcCCccceEEEECCEEEEECCcCCCCcccceEEEE
Confidence 4567899999765321 1111223222 224568986543 2 2223344456678999998 22221 2445455
Q ss_pred EeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcc
Q 045656 269 RAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGAR 348 (802)
Q Consensus 269 ra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR 348 (802)
-.. -.+|+....+ ..+....+...++|+.|+++-............ ++.=|.-.+.|+.-+.-| ..|
T Consensus 412 d~~--t~~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~--v~~yd~~~~~W~~~~~~~--------~~r 478 (534)
T PHA03098 412 SLN--TNKWSKGSPL-PISHYGGCAIYHDGKIYVIGGISYIDNIKVYNI--VESYNPVTNKWTELSSLN--------FPR 478 (534)
T ss_pred eCC--CCeeeecCCC-CccccCceEEEECCEEEEECCccCCCCCcccce--EEEecCCCCceeeCCCCC--------ccc
Confidence 432 2579764432 233445677788999999873210000000112 333354577898765333 135
Q ss_pred cCCccEEECCeEEEEcccCCCCCCceEEEEEe
Q 045656 349 NGGRPFVYDGNLYRVGQDCAESYGRRVRTFKV 380 (802)
Q Consensus 349 ~GG~vF~~dGkLyRp~QdC~~~YG~~L~l~~I 380 (802)
.+......+|++|.+...+...+-..+..|..
T Consensus 479 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 479 INASLCIFNNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred ccceEEEECCEEEEEcCCcCCcccceeEEEeC
Confidence 55556677999999987765544444555543
No 123
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=80.71 E-value=3.9 Score=46.97 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=65.9
Q ss_pred CCceEEEEEecccChhhHHHHHHHhcCCCCcc---eEEEEeCCCCCCCCCC----C-CCCCcEEEEEcCCc-----Cccc
Q 045656 553 YSQFTMLTMTFDARLWNLKMYVKHYSRCSSVK---EIVVVWNKGEPPKLSD----L-DSAVPVRIRVEKQN-----SLNN 619 (802)
Q Consensus 553 ~~qFTvvI~Ty~~R~~~L~~~v~hya~~p~v~---kIvVVWn~~~pP~~~~----~-~s~vPVrv~~~~~N-----SLNN 619 (802)
...+||+|-+|+ ....|...|+.+.+..+-. +|+|| ++.......+ . .....++++..++| .+|.
T Consensus 48 ~P~vsVIIP~yN-e~~~l~~~l~sl~~q~yp~~~~eIiVV-Dd~StD~T~~il~~~~~~~~~v~v~~~~~~~Gka~AlN~ 125 (439)
T TIGR03111 48 LPDITIIIPVYN-SEDTLFNCIESIYNQTYPIELIDIILA-NNQSTDDSFQVFCRAQNEFPGLSLRYMNSDQGKAKALNA 125 (439)
T ss_pred CCCEEEEEEeCC-ChHHHHHHHHHHHhcCCCCCCeEEEEE-ECCCChhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHHHH
Confidence 457999999998 4577888888886654322 68888 5444332211 1 11123444433332 1222
Q ss_pred cCccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCc
Q 045656 620 RFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDR 659 (802)
Q Consensus 620 RF~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdR 659 (802)
=+ ...+.|-|+.+|+|..+.++.|+...+...++|+-
T Consensus 126 gl---~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v 162 (439)
T TIGR03111 126 AI---YNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDI 162 (439)
T ss_pred HH---HHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCe
Confidence 22 34678899999999999999999888888778763
No 124
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=80.71 E-value=3.9 Score=41.64 Aligned_cols=105 Identities=11% Similarity=0.038 Sum_probs=62.5
Q ss_pred EEEEEecccChhhHHHHHHHhcCCCC-cceEEEEeCCCCCCCC-C---CC--CCCCcEEEEEcCCcC-c--cccCccCCC
Q 045656 557 TMLTMTFDARLWNLKMYVKHYSRCSS-VKEIVVVWNKGEPPKL-S---DL--DSAVPVRIRVEKQNS-L--NNRFKLDPL 626 (802)
Q Consensus 557 TvvI~Ty~~R~~~L~~~v~hya~~p~-v~kIvVVWn~~~pP~~-~---~~--~s~vPVrv~~~~~NS-L--NNRF~P~~~ 626 (802)
+|||-+|+.....|.+.++++.+..+ --||+||=|+...+.. . .+ .....++++....|. . .++-.-...
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~ 80 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALER 80 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHh
Confidence 58999998544678888888876543 2488888544332221 0 11 112345555443321 1 111111122
Q ss_pred C--CccEEEEecCCcccCHHHHHHHHHHHhhCCC-ceee
Q 045656 627 I--KTRGVLELDDDIMMTCDDIERGFQVWRQHPD-RIVG 662 (802)
Q Consensus 627 I--~T~AVLslDDDv~l~~deLeFAF~vWr~~Pd-RLVG 662 (802)
. .+|.|+.+|+|..++++.|+......+ +|+ -+|+
T Consensus 81 a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~ 118 (236)
T cd06435 81 TAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPRVGFVQ 118 (236)
T ss_pred cCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCeeEEe
Confidence 2 279999999999999999998887764 443 3454
No 125
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=80.47 E-value=3 Score=40.42 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=59.8
Q ss_pred EEEEEecccChhhHHHHHHHhcC--CCCcceEEEEeCCCCCCCCCC----CCCCCcEEEEEcCCcCc-cccCccCCCCCc
Q 045656 557 TMLTMTFDARLWNLKMYVKHYSR--CSSVKEIVVVWNKGEPPKLSD----LDSAVPVRIRVEKQNSL-NNRFKLDPLIKT 629 (802)
Q Consensus 557 TvvI~Ty~~R~~~L~~~v~hya~--~p~v~kIvVVWn~~~pP~~~~----~~s~vPVrv~~~~~NSL-NNRF~P~~~I~T 629 (802)
||||-+|+ +...|.+.++.+.+ .+. -||+|| ++...+...+ +... .+.++..+.... ..|=.-....+.
T Consensus 1 sivi~~~n-~~~~l~~~l~sl~~q~~~~-~evivv-Dd~s~d~~~~~~~~~~~~-~~~~~~~~~~g~~~a~n~~~~~a~~ 76 (202)
T cd06433 1 SIITPTYN-QAETLEETIDSVLSQTYPN-IEYIVI-DGGSTDGTVDIIKKYEDK-ITYWISEPDKGIYDAMNKGIALATG 76 (202)
T ss_pred CEEEeccc-hHHHHHHHHHHHHhCCCCC-ceEEEE-eCCCCccHHHHHHHhHhh-cEEEEecCCcCHHHHHHHHHHHcCC
Confidence 68999998 55778777877743 444 478888 4433332211 1111 233333222211 111111235678
Q ss_pred cEEEEecCCcccCHHHHHHHHHHHhhCCC
Q 045656 630 RGVLELDDDIMMTCDDIERGFQVWRQHPD 658 (802)
Q Consensus 630 ~AVLslDDDv~l~~deLeFAF~vWr~~Pd 658 (802)
|-|+.+|||..+..+.++.......+.|+
T Consensus 77 ~~v~~ld~D~~~~~~~~~~~~~~~~~~~~ 105 (202)
T cd06433 77 DIIGFLNSDDTLLPGALLAVVAAFAEHPE 105 (202)
T ss_pred CEEEEeCCCcccCchHHHHHHHHHHhCCC
Confidence 99999999999999999988878877764
No 126
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=79.75 E-value=3.3 Score=40.77 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=61.0
Q ss_pred EEEEecccChhhHHHHHHHhcCCC---CcceEEEEeCCCCCCCCCCC--CCCCcEEEEEcCCcC-----ccccCccCC--
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCS---SVKEIVVVWNKGEPPKLSDL--DSAVPVRIRVEKQNS-----LNNRFKLDP-- 625 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p---~v~kIvVVWn~~~pP~~~~~--~s~vPVrv~~~~~NS-----LNNRF~P~~-- 625 (802)
|||-+|+ ....|...|+++.+.. ..-+|+||=++ ......+. .....+.++..+.|. +|.=+.-..
T Consensus 1 VvIp~~n-e~~~i~~~l~sl~~~~~p~~~~eiivvdd~-s~D~t~~~~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~ 78 (183)
T cd06438 1 ILIPAHN-EEAVIGNTVRSLKAQDYPRELYRIFVVADN-CTDDTAQVARAAGATVLERHDPERRGKGYALDFGFRHLLNL 78 (183)
T ss_pred CEEeccc-hHHHHHHHHHHHHhcCCCCcccEEEEEeCC-CCchHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhc
Confidence 5788997 4567888888876533 23478877333 32211111 112223332222221 111011110
Q ss_pred CCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceeecc
Q 045656 626 LIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFY 664 (802)
Q Consensus 626 ~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~ 664 (802)
.-+.|.|+.+|.|..++++.|+...+..++.++-+.|..
T Consensus 79 ~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~ 117 (183)
T cd06438 79 ADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYY 117 (183)
T ss_pred CCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEE
Confidence 224789999999999999999999888887776555543
No 127
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=78.61 E-value=3.7 Score=41.28 Aligned_cols=104 Identities=14% Similarity=0.079 Sum_probs=61.0
Q ss_pred EEEEecccChhhHHHHHHHhcC-----CCCcceEEEEeCCCCCCCCC----CCC--CCCcEEEEEcCCcC-c-cccCccC
Q 045656 558 MLTMTFDARLWNLKMYVKHYSR-----CSSVKEIVVVWNKGEPPKLS----DLD--SAVPVRIRVEKQNS-L-NNRFKLD 624 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~-----~p~v~kIvVVWn~~~pP~~~----~~~--s~vPVrv~~~~~NS-L-NNRF~P~ 624 (802)
|||-+|+ ....|...|+.+.+ .+.-.||+||=++ ...... .+. ....|+++..+.|. . ..+-.-.
T Consensus 1 iiip~yN-~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~-S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~ 78 (211)
T cd04188 1 VVIPAYN-EEKRLPPTLEEAVEYLEERPSFSYEIIVVDDG-SKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGM 78 (211)
T ss_pred CEEcccC-hHHHHHHHHHHHHHHHhccCCCCEEEEEEeCC-CCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHH
Confidence 5788997 44555555555433 2245689988333 322211 111 12235777666552 1 1111222
Q ss_pred CCCCccEEEEecCCcccCHHHHHHHHHHHhh-CCCceeec
Q 045656 625 PLIKTRGVLELDDDIMMTCDDIERGFQVWRQ-HPDRIVGF 663 (802)
Q Consensus 625 ~~I~T~AVLslDDDv~l~~deLeFAF~vWr~-~PdRLVGF 663 (802)
.....|-|+.+|+|..++.+.|+...+.-.+ ..+-++|-
T Consensus 79 ~~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 79 LAARGDYILFADADLATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred HHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 4556799999999999999999988887443 44556653
No 128
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=71.93 E-value=2 Score=50.02 Aligned_cols=105 Identities=10% Similarity=-0.174 Sum_probs=79.8
Q ss_pred cccCccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCceeecccccccCCCCCcccceecccCcccceeeccceee
Q 045656 618 NNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGFYPRLVNGSPLRYRGEKYARRHKGYNMILTGAAFV 697 (802)
Q Consensus 618 NNRF~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF~~R~h~~~~~~y~~~~y~~~~~~YSMVLTgaAF~ 697 (802)
..|+.++.++.++++|.|+-.-..+...-.|..-+|.-.|-.|.++. +|.+.....|. +|||+++ .+.+
T Consensus 331 ~~~~~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~---------~lpf~~~~d~~-~fSV~v~-~~~v 399 (464)
T KOG1021|consen 331 CDRPLNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGI---------QLPFGDVLDWT-EFSVFVP-EKDV 399 (464)
T ss_pred cCCcchHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCc---------ccCcCCCccce-EEEEEEE-HHHh
Confidence 58899999999999999999998888888999999999999999882 23222223455 9999999 8888
Q ss_pred ehhhhhhhccchhHHHHHHhhccCCCchhhHHHHHHHHhhCCCc
Q 045656 698 DSQIAFNRYWSEQAKAGREFVDKFFNCEDVLLNYLYANASASKT 741 (802)
Q Consensus 698 Hr~Y~~~~Y~~~~p~~iR~~VDe~~NCEDIaMNFLVS~~T~~~p 741 (802)
++.+ ..-+...-++-| ...||+++| ++..+++..+|
T Consensus 400 ~~~~-----~~iL~~i~~~~~--~~m~~~v~~-~v~r~~~~~~~ 435 (464)
T KOG1021|consen 400 PELI-----KNILLSIPEEEV--LRMRENVIR-LVPRHFLKKPP 435 (464)
T ss_pred hhHH-----HHHHHhcCHHHH--HHHHHHHHH-HHHhhEEeCCC
Confidence 8751 112222222222 678999999 99999998874
No 129
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=71.75 E-value=7.6 Score=48.73 Aligned_cols=102 Identities=14% Similarity=0.115 Sum_probs=65.2
Q ss_pred CCceEEEEEecccChhhHHHHHHHhcCCCCc---ceEEEEeCCCCCCCCCCCCCCCcEEEEEcCCcC------ccccCcc
Q 045656 553 YSQFTMLTMTFDARLWNLKMYVKHYSRCSSV---KEIVVVWNKGEPPKLSDLDSAVPVRIRVEKQNS------LNNRFKL 623 (802)
Q Consensus 553 ~~qFTvvI~Ty~~R~~~L~~~v~hya~~p~v---~kIvVVWn~~~pP~~~~~~s~vPVrv~~~~~NS------LNNRF~P 623 (802)
.-..+|+|-||+.....+++.|....+..+= -||+|+ +|.+.+...++.....|+++..++|. +|+ ..
T Consensus 259 ~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVV-DDgS~D~t~~la~~~~v~yI~R~~n~~gKAGnLN~-aL- 335 (852)
T PRK11498 259 WPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWIL-DDGGREEFRQFAQEVGVKYIARPTHEHAKAGNINN-AL- 335 (852)
T ss_pred CCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEE-eCCCChHHHHHHHHCCcEEEEeCCCCcchHHHHHH-HH-
Confidence 3479999999975444566556554444332 267777 54443332222223467776555442 222 22
Q ss_pred CCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCC
Q 045656 624 DPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPD 658 (802)
Q Consensus 624 ~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~Pd 658 (802)
...+.|-|+.+|.|..+..+-|+.....-.++|+
T Consensus 336 -~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~ 369 (852)
T PRK11498 336 -KYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKK 369 (852)
T ss_pred -HhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCC
Confidence 2357899999999999999999988776677876
No 130
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=71.10 E-value=8.4 Score=39.97 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=61.1
Q ss_pred CceEEEEEecccChhhHHHHHHHhc----CCCCcceEEEEeCCCCCCCCCC----CC--C-CCcEEEEEcCCcC-----c
Q 045656 554 SQFTMLTMTFDARLWNLKMYVKHYS----RCSSVKEIVVVWNKGEPPKLSD----LD--S-AVPVRIRVEKQNS-----L 617 (802)
Q Consensus 554 ~qFTvvI~Ty~~R~~~L~~~v~hya----~~p~v~kIvVVWn~~~pP~~~~----~~--s-~vPVrv~~~~~NS-----L 617 (802)
..+||||-+|+. ...|..+++.+. ..+ --||+||=+ .+.....+ +. . ...|+++..++|. +
T Consensus 9 ~~vsVvIp~yne-~~~l~~~l~~l~~~~~~~~-~~eiivvDd-gS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~ 85 (243)
T PLN02726 9 MKYSIIVPTYNE-RLNIALIVYLIFKALQDVK-DFEIIVVDD-GSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAY 85 (243)
T ss_pred ceEEEEEccCCc-hhhHHHHHHHHHHHhccCC-CeEEEEEeC-CCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHH
Confidence 469999999973 444554444332 222 237888733 22221111 11 1 1235555444441 2
Q ss_pred cccCccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCC-Cceee
Q 045656 618 NNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHP-DRIVG 662 (802)
Q Consensus 618 NNRF~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~P-dRLVG 662 (802)
|.=+ ...++|.|+.+|+|..++++.|+..++...+.. +-++|
T Consensus 86 n~g~---~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 86 IHGL---KHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred HHHH---HHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 2222 245789999999999999999999998887654 44455
No 131
>PTZ00334 trans-sialidase; Provisional
Probab=70.64 E-value=67 Score=40.20 Aligned_cols=124 Identities=13% Similarity=0.169 Sum_probs=75.5
Q ss_pred EEECCEEEEEE-EeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeC-CEEEEEeCCCCCCeeEEEEec
Q 045656 194 YLQGNDLYLFY-ETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYH-GQIYMMPESRAKGEVRLYRAV 271 (802)
Q Consensus 194 l~~~g~~ylF~-E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~d-G~iYMiPEss~sg~l~LYra~ 271 (802)
+-+||+ .||- |..+. .++..=-++-|.|++ .|+..+-+ .+.+.+.|-|.|++ |++.||-.+. .|+-++|+..
T Consensus 267 ~medGT-LVFPv~a~~~-~g~~vslIiYS~d~g-~W~ls~g~--s~~gC~~P~I~EWe~gkLlM~t~C~-dG~RrVYES~ 340 (780)
T PTZ00334 267 QMKDGT-LVFPVEGTKK-DGKAVSLIIYSSATE-SGNLSKGM--SADGCSDPSVVEWKEGKLMMMTACD-DGRRRVYESG 340 (780)
T ss_pred EecCCe-EEEEEEEEcC-CCCEEEEEEEecCCC-CeEEcCCC--CCCCCCCCEEEEEcCCeEEEEEEeC-CCCEEEEEEC
Confidence 345666 4554 44332 222111223456766 59654311 25679999999996 9999987654 4667999999
Q ss_pred cCCcCceee-eecc--------------CCCccCCEEEEECCEEEEEEeCCCCCCCC--CCCcEEEEEEcCC
Q 045656 272 NFPLEWKLE-KIIM--------------KKPLVDPFMINHDGQYWLFGSDHSGFGTT--QNGQLEIWYSSSP 326 (802)
Q Consensus 272 ~FP~~We~~-~~Ll--------------~~~~vDatI~~~dG~wwLF~S~~~~~g~~--~n~~L~i~~AdSp 326 (802)
+.=..|.-. .+|- ...+|-+|| +|+=-|++|........ ..+.|++|..|.-
T Consensus 341 DmG~tWtEAlGTLsrVW~ns~~~~~~~~~~~~iTatI---e~r~VML~T~p~y~~~~~~~~~~L~LWlTDn~ 409 (780)
T PTZ00334 341 DKGDSWTEALGTLSRVWGNKQKGNEKGVGSGFSTATI---ENRDVMLVTLPVYSNRKGKEKGELHLWLTDNT 409 (780)
T ss_pred CCCCChhhCCCccceeeccCCCCCCCCCCCccEEEEE---CCCEEEEEecccccCcccccccceeEEEecCC
Confidence 988889732 1231 112444454 89999999864222111 1347999998865
No 132
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=70.52 E-value=16 Score=42.11 Aligned_cols=111 Identities=13% Similarity=0.135 Sum_probs=69.0
Q ss_pred CCceEEEEEecccChhhHHHHHHHhcCC--CCcceEEEEeCCCCCCCCC---CC-CCCCcEEEEEcCCcC-----ccccC
Q 045656 553 YSQFTMLTMTFDARLWNLKMYVKHYSRC--SSVKEIVVVWNKGEPPKLS---DL-DSAVPVRIRVEKQNS-----LNNRF 621 (802)
Q Consensus 553 ~~qFTvvI~Ty~~R~~~L~~~v~hya~~--p~v~kIvVVWn~~~pP~~~---~~-~s~vPVrv~~~~~NS-----LNNRF 621 (802)
....||+|-+|+ ....+...|+.+.+. |. -||+||=++....... .+ .....++++..++|. +|.=
T Consensus 74 ~p~vsViIP~yN-E~~~i~~~l~sll~q~yp~-~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~g- 150 (444)
T PRK14583 74 HPLVSILVPCFN-EGLNARETIHAALAQTYTN-IEVIAINDGSSDDTAQVLDALLAEDPRLRVIHLAHNQGKAIALRMG- 150 (444)
T ss_pred CCcEEEEEEeCC-CHHHHHHHHHHHHcCCCCC-eEEEEEECCCCccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHH-
Confidence 356999999998 455677777776553 43 4788874433222111 11 112236666533331 2211
Q ss_pred ccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCc-eeecccccc
Q 045656 622 KLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDR-IVGFYPRLV 668 (802)
Q Consensus 622 ~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdR-LVGF~~R~h 668 (802)
....+.|-|+.+|.|..++++.|+...+...++|+- +|+-.+|..
T Consensus 151 --l~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~ 196 (444)
T PRK14583 151 --AAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIR 196 (444)
T ss_pred --HHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceec
Confidence 123578999999999999999999998888777754 455455543
No 133
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=70.36 E-value=6.2 Score=44.34 Aligned_cols=91 Identities=19% Similarity=0.094 Sum_probs=55.2
Q ss_pred EEEEEecccChhhHHHHHHHhcCC-CC--cceEEEEeCCCCCCCCCCC-CCCCcEEEEEcCCcCccc-----cCccCC--
Q 045656 557 TMLTMTFDARLWNLKMYVKHYSRC-SS--VKEIVVVWNKGEPPKLSDL-DSAVPVRIRVEKQNSLNN-----RFKLDP-- 625 (802)
Q Consensus 557 TvvI~Ty~~R~~~L~~~v~hya~~-p~--v~kIvVVWn~~~pP~~~~~-~s~vPVrv~~~~~NSLNN-----RF~P~~-- 625 (802)
-|+|.+|+ |..-|++.|+.+.+. |+ -.+|+|.=.+......... .....|+++.++..+..| +|..+.
T Consensus 3 PVlv~ayN-Rp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~~i 81 (334)
T cd02514 3 PVLVIACN-RPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYYRI 81 (334)
T ss_pred CEEEEecC-CHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhccccEEEEcccccccccCcccccchhhHH
Confidence 48999999 788899999988775 23 2467776333332211111 112356666654433222 222222
Q ss_pred -------------CCCccEEEEecCCcccCHHHHHH
Q 045656 626 -------------LIKTRGVLELDDDIMMTCDDIER 648 (802)
Q Consensus 626 -------------~I~T~AVLslDDDv~l~~deLeF 648 (802)
....+.|+.||||..+.++=++|
T Consensus 82 a~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~y 117 (334)
T cd02514 82 ARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSY 117 (334)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHH
Confidence 22469999999999999996544
No 134
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=70.26 E-value=1.9e+02 Score=32.50 Aligned_cols=159 Identities=12% Similarity=0.213 Sum_probs=84.0
Q ss_pred eEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEE---eCCCCCC----ee
Q 045656 193 FYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMM---PESRAKG----EV 265 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMi---PEss~sg----~l 265 (802)
....++++||+.-.. ...+-++...+....|+.... +... -.+..-+...++++|++ -+..+.+ .-
T Consensus 34 ~~~~~~~iyv~gG~~-----~~~~~~~d~~~~~~~W~~l~~-~p~~-~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~ 106 (376)
T PRK14131 34 GAIDNNTVYVGLGSA-----GTSWYKLDLNAPSKGWTKIAA-FPGG-PREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFD 106 (376)
T ss_pred EEEECCEEEEEeCCC-----CCeEEEEECCCCCCCeEECCc-CCCC-CcccceEEEECCEEEEEcCCCCCCCCCceeEcc
Confidence 456789999986541 123334443222357875432 2111 12334466778999999 2211111 11
Q ss_pred EEEEeccCCcCceeeeeccCCCccCCEEEE-ECCEEEEEEeCCCC-CCC------------------------------C
Q 045656 266 RLYRAVNFPLEWKLEKIIMKKPLVDPFMIN-HDGQYWLFGSDHSG-FGT------------------------------T 313 (802)
Q Consensus 266 ~LYra~~FP~~We~~~~Ll~~~~vDatI~~-~dG~wwLF~S~~~~-~g~------------------------------~ 313 (802)
.+|+....-.+|+..+.+......+.+..- .+++-|+|+-.... +.. .
T Consensus 107 ~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (376)
T PRK14131 107 DVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYF 186 (376)
T ss_pred cEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcC
Confidence 355543333579876543333344555554 79999999742100 000 0
Q ss_pred CCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccC
Q 045656 314 QNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDC 367 (802)
Q Consensus 314 ~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC 367 (802)
....+.+| |.-...|+.-+.-| ..+|.+-.+...+++||.+....
T Consensus 187 ~~~~v~~Y--D~~t~~W~~~~~~p-------~~~~~~~a~v~~~~~iYv~GG~~ 231 (376)
T PRK14131 187 FNKEVLSY--DPSTNQWKNAGESP-------FLGTAGSAVVIKGNKLWLINGEI 231 (376)
T ss_pred cCceEEEE--ECCCCeeeECCcCC-------CCCCCcceEEEECCEEEEEeeeE
Confidence 01234444 44467798755333 11455556677799999998753
No 135
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=69.40 E-value=1.6e+02 Score=32.83 Aligned_cols=161 Identities=22% Similarity=0.308 Sum_probs=75.9
Q ss_pred EEEEeCCCCCceEeeeeecCCCcee-eeEEEEeCCEEEEEeCCCCCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEE
Q 045656 218 VAKSVDKGATWQQLGIALDEDWHLS-FPYVFDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINH 296 (802)
Q Consensus 218 va~S~D~g~tw~~~gvvLde~~HLS-yP~VF~~dG~iYMiPEss~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~ 296 (802)
++.+.|.|.+|+... |+++.--+ |-..+..++..+|.-+. =.+|+..+-=..|+....-....+.| .....
T Consensus 83 ll~T~DgG~tW~~v~--l~~~lpgs~~~i~~l~~~~~~l~~~~-----G~iy~T~DgG~tW~~~~~~~~gs~~~-~~r~~ 154 (302)
T PF14870_consen 83 LLHTTDGGKTWERVP--LSSKLPGSPFGITALGDGSAELAGDR-----GAIYRTTDGGKTWQAVVSETSGSIND-ITRSS 154 (302)
T ss_dssp EEEESSTTSS-EE------TT-SS-EEEEEEEETTEEEEEETT-------EEEESSTTSSEEEEE-S----EEE-EEE-T
T ss_pred EEEecCCCCCcEEee--cCCCCCCCeeEEEEcCCCcEEEEcCC-----CcEEEeCCCCCCeeEcccCCcceeEe-EEECC
Confidence 488899999999743 33321111 12234566777776432 36999999888897533211122333 22335
Q ss_pred CCEEEEEEeCCCCCCCCCCCcEEEEEEcCC-CCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCCCCCCceE
Q 045656 297 DGQYWLFGSDHSGFGTTQNGQLEIWYSSSP-FGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCAESYGRRV 375 (802)
Q Consensus 297 dG~wwLF~S~~~~~g~~~n~~L~i~~AdSp-lGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~~~YG~~L 375 (802)
||+|.+..+. | + +|.+-++ ...|++|..+- ..|-=-.-|..||.||+.++ |..|
T Consensus 155 dG~~vavs~~----G-----~--~~~s~~~G~~~w~~~~r~~--------~~riq~~gf~~~~~lw~~~~------Gg~~ 209 (302)
T PF14870_consen 155 DGRYVAVSSR----G-----N--FYSSWDPGQTTWQPHNRNS--------SRRIQSMGFSPDGNLWMLAR------GGQI 209 (302)
T ss_dssp TS-EEEEETT----S-----S--EEEEE-TT-SS-EEEE--S--------SS-EEEEEE-TTS-EEEEET------TTEE
T ss_pred CCcEEEEECc----c-----c--EEEEecCCCccceEEccCc--------cceehhceecCCCCEEEEeC------CcEE
Confidence 8886666532 2 2 3444444 55799987421 11222223666899999886 6777
Q ss_pred EEEEeccCCccceEEeccccCCCCCCccccccccCCCCC
Q 045656 376 RTFKVEILTKNEYKELEGRNAWNGARYHHLDAQQLSSGE 414 (802)
Q Consensus 376 ~l~~It~Lt~~~y~E~~~~~~w~~~~~Hhld~~~l~~g~ 414 (802)
..-+- ..+.++++|..... ...++-.||+.-.++.+
T Consensus 210 ~~s~~-~~~~~~w~~~~~~~--~~~~~~~ld~a~~~~~~ 245 (302)
T PF14870_consen 210 QFSDD-PDDGETWSEPIIPI--KTNGYGILDLAYRPPNE 245 (302)
T ss_dssp EEEE--TTEEEEE---B-TT--SS--S-EEEEEESSSS-
T ss_pred EEccC-CCCccccccccCCc--ccCceeeEEEEecCCCC
Confidence 77662 23444555533221 22456667777777644
No 136
>PHA02713 hypothetical protein; Provisional
Probab=69.16 E-value=2.6e+02 Score=33.58 Aligned_cols=156 Identities=10% Similarity=0.015 Sum_probs=84.0
Q ss_pred eEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeC---CCCCCeeEEEE
Q 045656 193 FYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPE---SRAKGEVRLYR 269 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPE---ss~sg~l~LYr 269 (802)
....++++|++--.-........+.+. +-...+|..... .+.--+.+-+...+|++|.+=- ......+..|.
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Y--d~~~n~W~~~~~---m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Yd 373 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKI--NIENKIHVELPP---MIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYT 373 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEE--ECCCCeEeeCCC---CcchhhceeEEEECCEEEEECCcCCCCCCceEEEEE
Confidence 456788888875421000011122222 223467876443 2334566678888999999931 12234566665
Q ss_pred eccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCC---------------CCCCCcEEEEEEcCCCCCCeeCC
Q 045656 270 AVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFG---------------TTQNGQLEIWYSSSPFGPWKPHK 334 (802)
Q Consensus 270 a~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g---------------~~~n~~L~i~~AdSplGPW~~hp 334 (802)
... .+|+..+.+ ..+....++.-.+|+-|+++....... ......+..| |.-...|+.-+
T Consensus 374 p~~--~~W~~~~~m-p~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~Y--DP~td~W~~v~ 448 (557)
T PHA02713 374 MGD--DKWKMLPDM-PIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRY--DTVNNIWETLP 448 (557)
T ss_pred CCC--CeEEECCCC-CcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEE--CCCCCeEeecC
Confidence 432 579765543 333344556667999999973210000 0001123333 43367898655
Q ss_pred CCCeeeCCCCCCcccCCccEEECCeEEEEccc
Q 045656 335 KNPIYNGDKSLGARNGGRPFVYDGNLYRVGQD 366 (802)
Q Consensus 335 ~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~Qd 366 (802)
.-| .+|.+..+...+|+||-+...
T Consensus 449 ~m~--------~~r~~~~~~~~~~~IYv~GG~ 472 (557)
T PHA02713 449 NFW--------TGTIRPGVVSHKDDIYVVCDI 472 (557)
T ss_pred CCC--------cccccCcEEEECCEEEEEeCC
Confidence 222 245555567889999999753
No 137
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=68.15 E-value=5.2 Score=49.10 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=65.6
Q ss_pred CceEEEEEecccChhhHHHHHHHhcCCCCc---ceEEEEeCCCCC------CCC---------C---CCCCCCcEEEEEc
Q 045656 554 SQFTMLTMTFDARLWNLKMYVKHYSRCSSV---KEIVVVWNKGEP------PKL---------S---DLDSAVPVRIRVE 612 (802)
Q Consensus 554 ~qFTvvI~Ty~~R~~~L~~~v~hya~~p~v---~kIvVVWn~~~p------P~~---------~---~~~s~vPVrv~~~ 612 (802)
...+|+|-+|+.....++..++...+..+- -+|+|| ++... |+. . ++....+|+++..
T Consensus 131 P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVv-DDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi~r 209 (713)
T TIGR03030 131 PTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWIL-DDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYITR 209 (713)
T ss_pred CeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEE-ECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEEEC
Confidence 469999999985445566677776665543 377777 33321 110 0 0111346777765
Q ss_pred CCcC------ccccCccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCC
Q 045656 613 KQNS------LNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPD 658 (802)
Q Consensus 613 ~~NS------LNNRF~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~Pd 658 (802)
++|. ||+= ....+.|-|+.+|.|..+.++-|+.......++|+
T Consensus 210 ~~n~~~KAgnLN~a---l~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~ 258 (713)
T TIGR03030 210 PRNVHAKAGNINNA---LKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPK 258 (713)
T ss_pred CCCCCCChHHHHHH---HHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCC
Confidence 5441 3322 23467899999999999999999999887777775
No 138
>PRK10073 putative glycosyl transferase; Provisional
Probab=68.08 E-value=33 Score=37.98 Aligned_cols=107 Identities=11% Similarity=0.081 Sum_probs=67.3
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCCCCc-ceEEEEeCCCCCCCCC----CC-CCCCcEEEEEcCCcCc-cccCccCCCC
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRCSSV-KEIVVVWNKGEPPKLS----DL-DSAVPVRIRVEKQNSL-NNRFKLDPLI 627 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~p~v-~kIvVVWn~~~pP~~~----~~-~s~vPVrv~~~~~NSL-NNRF~P~~~I 627 (802)
.++|||-+|+ +...|.+.|+.+.+-... -||+|| ++.++.... .+ .....|+++.++...+ ..|=.=....
T Consensus 7 ~vSVIIP~yN-~~~~L~~~l~Sl~~Qt~~~~EIIiV-dDgStD~t~~i~~~~~~~~~~i~vi~~~n~G~~~arN~gl~~a 84 (328)
T PRK10073 7 KLSIIIPLYN-AGKDFRAFMESLIAQTWTALEIIIV-NDGSTDNSVEIAKHYAENYPHVRLLHQANAGVSVARNTGLAVA 84 (328)
T ss_pred eEEEEEeccC-CHHHHHHHHHHHHhCCCCCeEEEEE-eCCCCccHHHHHHHHHhhCCCEEEEECCCCChHHHHHHHHHhC
Confidence 5899999998 567788888887543322 377777 444333221 12 1223477765442222 1222334567
Q ss_pred CccEEEEecCCcccCHHHHHHHHHHHhhCCCceeec
Q 045656 628 KTRGVLELDDDIMMTCDDIERGFQVWRQHPDRIVGF 663 (802)
Q Consensus 628 ~T~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVGF 663 (802)
++|-|+.+|+|-.+.++.|+...+.-++..--+|..
T Consensus 85 ~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~ 120 (328)
T PRK10073 85 TGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQC 120 (328)
T ss_pred CCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEE
Confidence 899999999999999999988877665554344433
No 139
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=64.53 E-value=2e+02 Score=33.34 Aligned_cols=57 Identities=16% Similarity=0.252 Sum_probs=35.4
Q ss_pred EEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCCCCCeeEEEEeccCCcCceee
Q 045656 218 VAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESRAKGEVRLYRAVNFPLEWKLE 280 (802)
Q Consensus 218 va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss~sg~l~LYra~~FP~~We~~ 280 (802)
++.+.|.|.+|+....-.+.+...++ +....++..||+-|.. .+|+..+.=..|+..
T Consensus 158 il~T~DgG~tW~~~~~~~~~p~~~~~-i~~~~~~~~~ivg~~G-----~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 158 LLHTSDGGETWERIPLSPKLPGEPVL-IKATGPKSAEMVTDEG-----AIYVTSNAGRNWKAA 214 (398)
T ss_pred EEEEcCCCCCceECccccCCCCCceE-EEEECCCceEEEeccc-----eEEEECCCCCCceEc
Confidence 47888999999876533333443332 2223345677776433 388888877789754
No 140
>PHA03098 kelch-like protein; Provisional
Probab=62.72 E-value=3.1e+02 Score=32.17 Aligned_cols=154 Identities=18% Similarity=0.284 Sum_probs=85.6
Q ss_pred eEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeC---CCCCCeeEEEE
Q 045656 193 FYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPE---SRAKGEVRLYR 269 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPE---ss~sg~l~LYr 269 (802)
.+..++++|++--.-........+ ...+....+|+.... + +....+.-+...+|++|++=- ......+..|.
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v--~~yd~~~~~W~~~~~-~--~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd 364 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSV--VSYDTKTKSWNKVPE-L--IYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWK 364 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccE--EEEeCCCCeeeECCC-C--CcccccceEEEECCEEEEEeCCCCCEecceEEEEc
Confidence 346788888876432111111122 332334567876543 2 222344556677999999931 22234455554
Q ss_pred eccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCccc
Q 045656 270 AVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARN 349 (802)
Q Consensus 270 a~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~ 349 (802)
.. -.+|+..+.+ ..+-..++....+|+.|+++-... +......+..| |--.+.|+..+.-| .+|.
T Consensus 365 ~~--~~~W~~~~~l-p~~r~~~~~~~~~~~iYv~GG~~~--~~~~~~~v~~y--d~~t~~W~~~~~~p--------~~r~ 429 (534)
T PHA03098 365 PG--ESKWREEPPL-IFPRYNPCVVNVNNLIYVIGGISK--NDELLKTVECF--SLNTNKWSKGSPLP--------ISHY 429 (534)
T ss_pred CC--CCceeeCCCc-CcCCccceEEEECCEEEEECCcCC--CCcccceEEEE--eCCCCeeeecCCCC--------cccc
Confidence 32 2579765543 234456677778999999974210 11111234444 33356798765333 2566
Q ss_pred CCccEEECCeEEEEccc
Q 045656 350 GGRPFVYDGNLYRVGQD 366 (802)
Q Consensus 350 GG~vF~~dGkLyRp~Qd 366 (802)
++.....+|++|.+...
T Consensus 430 ~~~~~~~~~~iyv~GG~ 446 (534)
T PHA03098 430 GGCAIYHDGKIYVIGGI 446 (534)
T ss_pred CceEEEECCEEEEECCc
Confidence 77777889999998754
No 141
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=62.44 E-value=28 Score=37.86 Aligned_cols=112 Identities=21% Similarity=0.213 Sum_probs=69.6
Q ss_pred ceEEEEEecccChhhHHHHHHHhcCCCCcceEEEEeCCCCCCCCCC-CCC--CCcEEEEEcCCcC----ccccCccCCCC
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLSD-LDS--AVPVRIRVEKQNS----LNNRFKLDPLI 627 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~~p~v~kIvVVWn~~~pP~~~~-~~s--~vPVrv~~~~~NS----LNNRF~P~~~I 627 (802)
..+++|.||+ |...|...+..+.+.....+++|+=.|.+++...+ ... ..-|+++....|- =+|+-.-...=
T Consensus 4 ~i~~iiv~yn-~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~~~~v~~i~~~~NlG~agg~n~g~~~a~~ 82 (305)
T COG1216 4 KISIIIVTYN-RGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARFFPNVRLIENGENLGFAGGFNRGIKYALA 82 (305)
T ss_pred ceEEEEEecC-CHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhcCCcEEEEEcCCCccchhhhhHHHHHHhc
Confidence 5789999998 56667777887777666655555222222222221 122 3467888777762 23321111111
Q ss_pred Ccc-EEEEecCCcccCHHHHHHHHHHHhhCCCc-eeeccccc
Q 045656 628 KTR-GVLELDDDIMMTCDDIERGFQVWRQHPDR-IVGFYPRL 667 (802)
Q Consensus 628 ~T~-AVLslDDDv~l~~deLeFAF~vWr~~PdR-LVGF~~R~ 667 (802)
+.+ .|+.+++|+.+.++.|+--.+.=.+.|+- +||..-+.
T Consensus 83 ~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~ 124 (305)
T COG1216 83 KGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRN 124 (305)
T ss_pred CCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEec
Confidence 112 79999999999999999999999888766 44444343
No 142
>PRK10018 putative glycosyl transferase; Provisional
Probab=58.01 E-value=24 Score=38.44 Aligned_cols=102 Identities=16% Similarity=0.035 Sum_probs=67.1
Q ss_pred ceEEEEEecccChhhHHHHHHHhcC--CCCcceEEEEeCCCCCCCC-CCC-C--CCCcEEEEEcCCcC-c-cccCccCCC
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSR--CSSVKEIVVVWNKGEPPKL-SDL-D--SAVPVRIRVEKQNS-L-NNRFKLDPL 626 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~--~p~v~kIvVVWn~~~pP~~-~~~-~--s~vPVrv~~~~~NS-L-NNRF~P~~~ 626 (802)
..||||-||+ +...|.+.|+.+.+ .+. -||+||=++...... ..+ . ....|+++..+.|. . ..|-.-...
T Consensus 6 ~VSVIip~yN-~~~~l~~~l~Svl~Qt~~~-~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~N~gi~~ 83 (279)
T PRK10018 6 LISIYMPTWN-RQQLAIRAIKSVLRQDYSN-WEMIIVDDCSTSWEQLQQYVTALNDPRITYIHNDINSGACAVRNQAIML 83 (279)
T ss_pred EEEEEEEeCC-CHHHHHHHHHHHHhCCCCC-eEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999998 55667777776543 232 488888443321100 011 0 23468888777664 1 233334456
Q ss_pred CCccEEEEecCCcccCHHHHHHHHHHHhhCCC
Q 045656 627 IKTRGVLELDDDIMMTCDDIERGFQVWRQHPD 658 (802)
Q Consensus 627 I~T~AVLslDDDv~l~~deLeFAF~vWr~~Pd 658 (802)
.+.|-|+.+|+|..+.++.|+...+.+.+.+.
T Consensus 84 a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~ 115 (279)
T PRK10018 84 AQGEYITGIDDDDEWTPNRLSVFLAHKQQLVT 115 (279)
T ss_pred cCCCEEEEECCCCCCCccHHHHHHHHHHhCCC
Confidence 78999999999999999999988888876543
No 143
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=52.45 E-value=2.6e+02 Score=31.01 Aligned_cols=107 Identities=22% Similarity=0.427 Sum_probs=54.0
Q ss_pred CCCCeEEEEEecC-CCCccCccccccccCCCCCCCCCCCCe-eccccccCCCCCCceeeCeeeEEECCEEEEEEEeeecc
Q 045656 133 SEGSWSIGVFFGN-SPFSLKPIETANVWRDDSAAWPVANPI-MTCASVSSAGFPSNFVADPFFYLQGNDLYLFYETKNSI 210 (802)
Q Consensus 133 ~~~~Wsig~~~g~-~p~~l~p~~~~~~~~~~~~~w~~~NPV-lt~~~v~d~~~~~~F~ADPFll~~~g~~ylF~E~~~~~ 210 (802)
+..+..+|.--|+ +|-+|--.-- | -+| ++|- ++...+-.. =..--+.|.+=.+++++|| +.+...
T Consensus 145 ~~~~fA~GyHnGD~sPRe~G~~yf---s----~~~--~sp~~~vrr~i~se--y~~~AsEPCvkyY~g~LyL--tTRgt~ 211 (367)
T PF12217_consen 145 DDNQFAVGYHNGDVSPRELGFLYF---S----DAF--ASPGVFVRRIIPSE--YERNASEPCVKYYDGVLYL--TTRGTL 211 (367)
T ss_dssp SSS-EEEEEEE-SSSS-EEEEEEE---T----TTT--T-TT--EEEE--GG--G-TTEEEEEEEEETTEEEE--EEEES-
T ss_pred cCCceeEEeccCCCCcceeeEEEe---c----ccc--cCCcceeeeechhh--hccccccchhhhhCCEEEE--EEcCcC
Confidence 5567788988888 5555432211 1 222 3443 221111111 1123578999999999988 554433
Q ss_pred C-CCceEEEEEEeCCCCCceEeeeeecCC-CceeeeEEEEeCCEEEEE
Q 045656 211 T-MQGDIGVAKSVDKGATWQQLGIALDED-WHLSFPYVFDYHGQIYMM 256 (802)
Q Consensus 211 ~-~~G~I~va~S~D~g~tw~~~gvvLde~-~HLSyP~VF~~dG~iYMi 256 (802)
. ..|- ..+.++|.|.+|..... .+. .|---||- +.++.+||.
T Consensus 212 ~~~~GS-~L~rs~d~G~~w~slrf--p~nvHhtnlPFa-kvgD~l~mF 255 (367)
T PF12217_consen 212 PTNPGS-SLHRSDDNGQNWSSLRF--PNNVHHTNLPFA-KVGDVLYMF 255 (367)
T ss_dssp TTS----EEEEESSTTSS-EEEE---TT---SS---EE-EETTEEEEE
T ss_pred CCCCcc-eeeeecccCCchhhccc--cccccccCCCce-eeCCEEEEE
Confidence 2 2232 35778899999998764 344 44555764 346789999
No 144
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=51.76 E-value=4.7e+02 Score=30.88 Aligned_cols=210 Identities=18% Similarity=0.208 Sum_probs=123.6
Q ss_pred CCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCC--CCCeeEEEEeccCC
Q 045656 197 GNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESR--AKGEVRLYRAVNFP 274 (802)
Q Consensus 197 ~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss--~sg~l~LYra~~FP 274 (802)
+++.|+|--...... ...-.+...+.....|......-++|.+-+.=.+-..++++|++-=.. ...--.|+...---
T Consensus 70 ~~~~~vfGG~~~~~~-~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t 148 (482)
T KOG0379|consen 70 GNKLYVFGGYGSGDR-LTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLST 148 (482)
T ss_pred CCEEEEECCCCCCCc-cccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCC
Confidence 777777765533322 222123443333456766555555664433333445568888884222 11211233322222
Q ss_pred cCceeeeeccC--CCccCCEEEEECCEEEEEEeCCCCCCCC--CCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccC
Q 045656 275 LEWKLEKIIMK--KPLVDPFMINHDGQYWLFGSDHSGFGTT--QNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNG 350 (802)
Q Consensus 275 ~~We~~~~Ll~--~~~vDatI~~~dG~wwLF~S~~~~~g~~--~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~G 350 (802)
-+|+..+..-+ .+-..-+++-++.+-|+|.-. +.. ....|++|--++. .|++-. ..+. ...+|.|
T Consensus 149 ~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~----~~~~~~~ndl~i~d~~~~--~W~~~~----~~g~-~P~pR~g 217 (482)
T KOG0379|consen 149 RTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGI----GGTGDSLNDLHIYDLETS--TWSELD----TQGE-APSPRYG 217 (482)
T ss_pred CcEEEecCcCCCCCCcccceEEEECCEEEEECCc----cCcccceeeeeeeccccc--cceecc----cCCC-CCCCCCC
Confidence 36876554222 346778888899999999832 211 2335666643333 398633 2332 2358999
Q ss_pred CccEEECCeEEEEcccC-CCCCCceEEEEEeccCCccceEEeccccCCCCCCc-cccccccCCCCCeEEEEeCcccC
Q 045656 351 GRPFVYDGNLYRVGQDC-AESYGRRVRTFKVEILTKNEYKELEGRNAWNGARY-HHLDAQQLSSGEWIAVMDGDRAL 425 (802)
Q Consensus 351 G~vF~~dGkLyRp~QdC-~~~YG~~L~l~~It~Lt~~~y~E~~~~~~w~~~~~-Hhld~~~l~~g~~i~vvDG~r~~ 425 (802)
....+.+++++++.--| ...|=.-+.++.+ +.++.++.+....|+..|+ |++-. .++.+.++=|...+
T Consensus 218 H~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl---~~~~W~~~~~~g~~p~~R~~h~~~~----~~~~~~l~gG~~~~ 287 (482)
T KOG0379|consen 218 HAMVVVGNKLLVFGGGDDGDVYLNDVHILDL---STWEWKLLPTGGDLPSPRSGHSLTV----SGDHLLLFGGGTDP 287 (482)
T ss_pred ceEEEECCeEEEEeccccCCceecceEeeec---ccceeeeccccCCCCCCcceeeeEE----ECCEEEEEcCCccc
Confidence 99999999999999888 4455555666555 4477777777777887774 44332 35688888888877
No 145
>PRK10063 putative glycosyl transferase; Provisional
Probab=51.34 E-value=50 Score=35.04 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=50.2
Q ss_pred ceEEEEEecccChhhHHHHHHHhcC---CCCc-ceEEEEeCCCCCCCCC----CCCCCCcEEEEEcCCcCccc-cCccCC
Q 045656 555 QFTMLTMTFDARLWNLKMYVKHYSR---CSSV-KEIVVVWNKGEPPKLS----DLDSAVPVRIRVEKQNSLNN-RFKLDP 625 (802)
Q Consensus 555 qFTvvI~Ty~~R~~~L~~~v~hya~---~p~v-~kIvVVWn~~~pP~~~----~~~s~vPVrv~~~~~NSLNN-RF~P~~ 625 (802)
.+||||-||+ ....|.+.|+.+.+ -+.. -||+|| ++.++.... .+....+++++.++.+.+.. +=.=..
T Consensus 2 ~vSVIi~~yN-~~~~l~~~l~sl~~~~~~~~~~~EiIVv-DdgStD~t~~i~~~~~~~~~i~~i~~~~~G~~~A~N~Gi~ 79 (248)
T PRK10063 2 LLSVITVAFR-NLEGIVKTHASLRHLAQDPGISFEWIVV-DGGSNDGTREFLENLNGIFNLRFVSEPDNGIYDAMNKGIA 79 (248)
T ss_pred eEEEEEEeCC-CHHHHHHHHHHHHHHHhCCCCCEEEEEE-ECcCcccHHHHHHHhcccCCEEEEECCCCCHHHHHHHHHH
Confidence 4799999998 45567777776642 1222 367766 444433221 12222368877655443211 111123
Q ss_pred CCCccEEEEec-CCcccCHHHHHH
Q 045656 626 LIKTRGVLELD-DDIMMTCDDIER 648 (802)
Q Consensus 626 ~I~T~AVLslD-DDv~l~~deLeF 648 (802)
..+.|-|+.+| ||+..+ +.+++
T Consensus 80 ~a~g~~v~~ld~DD~~~~-~~~~~ 102 (248)
T PRK10063 80 MAQGRFALFLNSGDIFHQ-DAANF 102 (248)
T ss_pred HcCCCEEEEEeCCcccCc-CHHHH
Confidence 45789999999 666655 43443
No 146
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=48.54 E-value=2.9e+02 Score=30.82 Aligned_cols=205 Identities=19% Similarity=0.291 Sum_probs=107.1
Q ss_pred ecCCCCccCccccccccCCCCCCCCCCCCeeccccccCCCCCCceeeCee------eEEECCEEEEEEEeeeccCCCceE
Q 045656 143 FGNSPFSLKPIETANVWRDDSAAWPVANPIMTCASVSSAGFPSNFVADPF------FYLQGNDLYLFYETKNSITMQGDI 216 (802)
Q Consensus 143 ~g~~p~~l~p~~~~~~~~~~~~~w~~~NPVlt~~~v~d~~~~~~F~ADPF------ll~~~g~~ylF~E~~~~~~~~G~I 216 (802)
.|.+-=.++||+- ++=++.+--|---+|-|+.+.+.. .+=|=|| ++..+++.||.--.-| . ...+=
T Consensus 34 sGedy~~~~piDV-H~lNa~~~RWtk~pp~~~ka~i~~-----~yp~VPyqRYGHtvV~y~d~~yvWGGRND-~-egaCN 105 (392)
T KOG4693|consen 34 SGEDYDAKDPIDV-HVLNAENYRWTKMPPGITKATIES-----PYPAVPYQRYGHTVVEYQDKAYVWGGRND-D-EGACN 105 (392)
T ss_pred cccccccCCccee-EEeeccceeEEecCcccccccccC-----CCCccchhhcCceEEEEcceEEEEcCccC-c-ccccc
Confidence 4666677888875 455677888988888887655543 2224444 3457778887654322 1 11122
Q ss_pred EEEEEeCCCCCceEeee---ee-cCCCceeeeEEEEeCCEEEEEe--C-CCCCCeeEEEEeccCCcCceeeeeccCC---
Q 045656 217 GVAKSVDKGATWQQLGI---AL-DEDWHLSFPYVFDYHGQIYMMP--E-SRAKGEVRLYRAVNFPLEWKLEKIIMKK--- 286 (802)
Q Consensus 217 ~va~S~D~g~tw~~~gv---vL-de~~HLSyP~VF~~dG~iYMiP--E-ss~sg~l~LYra~~FP~~We~~~~Ll~~--- 286 (802)
-..+.+-+-..|....+ |= ..+-| |+ -..++..|+.= | ....=...++...---..|....+--+.
T Consensus 106 ~Ly~fDp~t~~W~~p~v~G~vPgaRDGH-sA---cV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pprw 181 (392)
T KOG4693|consen 106 LLYEFDPETNVWKKPEVEGFVPGARDGH-SA---CVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRW 181 (392)
T ss_pred eeeeeccccccccccceeeecCCccCCc-ee---eEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchh
Confidence 22333334456654432 11 11233 11 23456777771 2 2111111222211111246543331111
Q ss_pred -CccCCEEEEECCEEEEEEeCCCCCCCCCC--CcE--EEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEE
Q 045656 287 -PLVDPFMINHDGQYWLFGSDHSGFGTTQN--GQL--EIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLY 361 (802)
Q Consensus 287 -~~vDatI~~~dG~wwLF~S~~~~~g~~~n--~~L--~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLy 361 (802)
..-.++++ +|.-|+|.-..+.+|.... .++ .|-+-|--.+-|+..|.|+++-. +|-....|++||++|
T Consensus 182 RDFH~a~~~--~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~-----GRRSHS~fvYng~~Y 254 (392)
T KOG4693|consen 182 RDFHTASVI--DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPG-----GRRSHSTFVYNGKMY 254 (392)
T ss_pred hhhhhhhhc--cceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCC-----cccccceEEEcceEE
Confidence 13334444 3888888854444444321 111 13333555789999999987654 566778899999999
Q ss_pred EEccc
Q 045656 362 RVGQD 366 (802)
Q Consensus 362 Rp~Qd 366 (802)
++..-
T Consensus 255 ~FGGY 259 (392)
T KOG4693|consen 255 MFGGY 259 (392)
T ss_pred Eeccc
Confidence 98753
No 147
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=47.79 E-value=25 Score=39.13 Aligned_cols=101 Identities=15% Similarity=0.111 Sum_probs=61.1
Q ss_pred CCceEEEEEecccChhhHHHHHHHhcC--------C-CCcceEEEEeCCCCCCCCCC----C-C----CCCcEEEEEcCC
Q 045656 553 YSQFTMLTMTFDARLWNLKMYVKHYSR--------C-SSVKEIVVVWNKGEPPKLSD----L-D----SAVPVRIRVEKQ 614 (802)
Q Consensus 553 ~~qFTvvI~Ty~~R~~~L~~~v~hya~--------~-p~v~kIvVVWn~~~pP~~~~----~-~----s~vPVrv~~~~~ 614 (802)
.-+++|||-+|+. ...|...++...+ - ..--||+|| ++.+.....+ + . ....++++..++
T Consensus 69 ~~~isVVIP~yNe-~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVV-DDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~ 146 (333)
T PTZ00260 69 DVDLSIVIPAYNE-EDRLPKMLKETIKYLESRSRKDPKFKYEIIIV-NDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR 146 (333)
T ss_pred CeEEEEEEeeCCC-HHHHHHHHHHHHHHHHhhhccCCCCCEEEEEE-eCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC
Confidence 3478999999984 3445554444322 1 224589998 4433322111 1 1 123488887666
Q ss_pred cC--ccccCccCCCCCccEEEEecCCcccCHHHHHHHHHHHhh
Q 045656 615 NS--LNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQ 655 (802)
Q Consensus 615 NS--LNNRF~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~ 655 (802)
|. -..+-.=...-+.|-|+.+|.|..++.++++...+..++
T Consensus 147 N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 147 NKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLK 189 (333)
T ss_pred CCChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 52 111111112346799999999999999999999998876
No 148
>PLN02193 nitrile-specifier protein
Probab=46.68 E-value=5.4e+02 Score=30.09 Aligned_cols=159 Identities=11% Similarity=0.097 Sum_probs=86.1
Q ss_pred eEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEe---CCCCCCeeEEEE
Q 045656 193 FYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMP---ESRAKGEVRLYR 269 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiP---Ess~sg~l~LYr 269 (802)
....++++|||--. +.......+-++. -...+|+.....-..|.--++--+...++++|++= +......+..|-
T Consensus 224 ~v~~~~~lYvfGG~-~~~~~~ndv~~yD--~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd 300 (470)
T PLN02193 224 MVSIGSTLYVFGGR-DASRQYNGFYSFD--TTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYN 300 (470)
T ss_pred EEEECCEEEEECCC-CCCCCCccEEEEE--CCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEE
Confidence 45678899998643 1111122443433 23467987544212232333334556789999993 222223344443
Q ss_pred eccCCcCceeeeec--cCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCc
Q 045656 270 AVNFPLEWKLEKII--MKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGA 347 (802)
Q Consensus 270 a~~FP~~We~~~~L--l~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~a 347 (802)
. .-.+|+..+.. ...+-..+++..++|+.|+++-.. +. ....+.+| |--...|+.-+..+ .. ..+
T Consensus 301 ~--~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~---g~-~~~dv~~y--D~~t~~W~~~~~~g---~~--P~~ 367 (470)
T PLN02193 301 I--VDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFN---GC-EVDDVHYY--DPVQDKWTQVETFG---VR--PSE 367 (470)
T ss_pred C--CCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCC---CC-ccCceEEE--ECCCCEEEEeccCC---CC--CCC
Confidence 3 23578764431 112234566777899999988431 11 12355555 33355698654221 01 125
Q ss_pred ccCCccEEECCeEEEEcccC
Q 045656 348 RNGGRPFVYDGNLYRVGQDC 367 (802)
Q Consensus 348 R~GG~vF~~dGkLyRp~QdC 367 (802)
|.+......++++|.+....
T Consensus 368 R~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 368 RSVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred cceeEEEEECCEEEEECCcc
Confidence 76666777899999988764
No 149
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=45.76 E-value=20 Score=39.42 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=64.7
Q ss_pred CCceEEEEEecccChhhHHHHHHHhcCC---CCcceEEEEeCCCCCCCCC---CCCCC-Cc-EEEEE-cCCc--CccccC
Q 045656 553 YSQFTMLTMTFDARLWNLKMYVKHYSRC---SSVKEIVVVWNKGEPPKLS---DLDSA-VP-VRIRV-EKQN--SLNNRF 621 (802)
Q Consensus 553 ~~qFTvvI~Ty~~R~~~L~~~v~hya~~---p~v~kIvVVWn~~~pP~~~---~~~s~-vP-Vrv~~-~~~N--SLNNRF 621 (802)
....+|||-+|+ ....|...|+.+.+. +...||+||=++...-... .+... ++ .+++. .+.| .-.++.
T Consensus 30 ~~~vSVVIPayN-ee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A~~ 108 (306)
T PRK13915 30 GRTVSVVLPALN-EEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVSREEILPELPPRPGKGEALW 108 (306)
T ss_pred CCCEEEEEecCC-cHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhcchhhhhccccCCCHHHHHH
Confidence 347999999998 455676667666542 3456898875543211000 11100 00 01100 1111 101111
Q ss_pred ccCCCCCccEEEEecCCcc-cCHHHHHHHHHHHhhCCC--ceeeccccc
Q 045656 622 KLDPLIKTRGVLELDDDIM-MTCDDIERGFQVWRQHPD--RIVGFYPRL 667 (802)
Q Consensus 622 ~P~~~I~T~AVLslDDDv~-l~~deLeFAF~vWr~~Pd--RLVGF~~R~ 667 (802)
.=....+.|.|+.+|.|.. ++++.|+-..+....+|+ =+.|++.|.
T Consensus 109 ~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~ 157 (306)
T PRK13915 109 RSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRP 157 (306)
T ss_pred HHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEeccc
Confidence 1123456899999999996 899999988887766664 355777775
No 150
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=43.14 E-value=6.8e+02 Score=30.32 Aligned_cols=156 Identities=13% Similarity=0.179 Sum_probs=93.7
Q ss_pred eEEECCEEEEEEEeeeccCCCceEEEEEEeC-CCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCCCCCeeE-EEEe
Q 045656 193 FYLQGNDLYLFYETKNSITMQGDIGVAKSVD-KGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESRAKGEVR-LYRA 270 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~~~~~~G~I~va~S~D-~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss~sg~l~-LYra 270 (802)
+...++.+|+.-..-. ++....-+.-.| ...+|..... +.. .=+.=-|-..+|.+|.+....+...+. +-++
T Consensus 328 ~~~~~~~lYv~GG~~~---~~~~l~~ve~YD~~~~~W~~~a~-M~~--~R~~~~v~~l~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 328 VAVLNGKLYVVGGYDS---GSDRLSSVERYDPRTNQWTPVAP-MNT--KRSDFGVAVLDGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred EEEECCEEEEEccccC---CCcccceEEEecCCCCceeccCC-ccC--ccccceeEEECCEEEEEeccccccccccEEEe
Confidence 3467778888665421 222333334344 4467987433 222 222334567789999998655443333 4444
Q ss_pred ccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCC-CCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCccc
Q 045656 271 VNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTT-QNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARN 349 (802)
Q Consensus 271 ~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~-~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~ 349 (802)
...-.+|+..+.+.. +-....+..++|+-|..+-. .+.. .-..+..| |.-.+.|+.-+.-+ .+|-
T Consensus 402 Dp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~---~~~~~~l~sve~Y--DP~t~~W~~~~~M~--------~~R~ 467 (571)
T KOG4441|consen 402 DPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGG---DGSSNCLNSVECY--DPETNTWTLIAPMN--------TRRS 467 (571)
T ss_pred cCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCc---CCCccccceEEEE--cCCCCceeecCCcc--------cccc
Confidence 344468987765444 66777888899999998842 1222 22344444 44477898766322 3576
Q ss_pred CCccEEECCeEEEEcccCC
Q 045656 350 GGRPFVYDGNLYRVGQDCA 368 (802)
Q Consensus 350 GG~vF~~dGkLyRp~QdC~ 368 (802)
+..+-+.+|+||-....+.
T Consensus 468 ~~g~a~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 468 GFGVAVLNGKIYVVGGFDG 486 (571)
T ss_pred cceEEEECCEEEEECCccC
Confidence 6668888999999987653
No 151
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=39.10 E-value=59 Score=35.01 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=63.3
Q ss_pred EEEEEecccC-----hhhHHHHHHHhcC--CCCcceEEEEeCCCCCCCCC----CCCCCCcEEEEEcC-CcCcccc----
Q 045656 557 TMLTMTFDAR-----LWNLKMYVKHYSR--CSSVKEIVVVWNKGEPPKLS----DLDSAVPVRIRVEK-QNSLNNR---- 620 (802)
Q Consensus 557 TvvI~Ty~~R-----~~~L~~~v~hya~--~p~v~kIvVVWn~~~pP~~~----~~~s~vPVrv~~~~-~NSLNNR---- 620 (802)
||||-.+.+. ...|+..+..++. .+.--|||||-+.....-.. ..+...-++++..+ .+..=+|
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~ar 80 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKAR 80 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHH
Confidence 5788877532 1344444666655 35556899998876554211 11221122233222 2210000
Q ss_pred CccCCCCCccEEEEecCCcccCHHHHHHHHH---HHhhCCCceeecccc
Q 045656 621 FKLDPLIKTRGVLELDDDIMMTCDDIERGFQ---VWRQHPDRIVGFYPR 666 (802)
Q Consensus 621 F~P~~~I~T~AVLslDDDv~l~~deLeFAF~---vWr~~PdRLVGF~~R 666 (802)
=.-...-++|-|+.+|-|+.++++-|+.+.+ .=.++++.++-++.+
T Consensus 81 N~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~ 129 (281)
T PF10111_consen 81 NIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCL 129 (281)
T ss_pred HHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence 0011346899999999999999999999988 334567777766654
No 152
>PLN02153 epithiospecifier protein
Probab=36.45 E-value=6.2e+02 Score=27.85 Aligned_cols=156 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred eEEECCEEEEEEEeeeccCCCceE--EEEEEeCCCCCceEeeeeecCCCc-eeeeEEEEeCCEEEEE---eCCCCCCeeE
Q 045656 193 FYLQGNDLYLFYETKNSITMQGDI--GVAKSVDKGATWQQLGIALDEDWH-LSFPYVFDYHGQIYMM---PESRAKGEVR 266 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~~~~~~G~I--~va~S~D~g~tw~~~gvvLde~~H-LSyP~VF~~dG~iYMi---PEss~sg~l~ 266 (802)
....++++|||--. ......+ .+...+-...+|+........+-. ...--+-..++++|++ .+......+.
T Consensus 28 ~~~~~~~iyv~GG~---~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~ 104 (341)
T PLN02153 28 IAVVGDKLYSFGGE---LKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFY 104 (341)
T ss_pred EEEECCEEEEECCc---cCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEE
Q ss_pred EEEeccCCcCceeeeec----cCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcE-------EEEEEcCCCCCCeeCCC
Q 045656 267 LYRAVNFPLEWKLEKII----MKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQL-------EIWYSSSPFGPWKPHKK 335 (802)
Q Consensus 267 LYra~~FP~~We~~~~L----l~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L-------~i~~AdSplGPW~~hp~ 335 (802)
.|-... .+|+..+.+ ...+....++...+++.|+|. |...+..+ .++.=|-....|+.-+.
T Consensus 105 ~yd~~t--~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~G------G~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~ 176 (341)
T PLN02153 105 SYDTVK--NEWTFLTKLDEEGGPEARTFHSMASDENHVYVFG------GVSKGGLMKTPERFRTIEAYNIADGKWVQLPD 176 (341)
T ss_pred EEECCC--CEEEEeccCCCCCCCCCceeeEEEEECCEEEEEC------CccCCCccCCCcccceEEEEECCCCeEeeCCC
Q ss_pred CCeeeCCCCCCcccCCccEEECCeEEEEc
Q 045656 336 NPIYNGDKSLGARNGGRPFVYDGNLYRVG 364 (802)
Q Consensus 336 NPI~~~~~~~~aR~GG~vF~~dGkLyRp~ 364 (802)
.+.... +|.+......+|++|.+.
T Consensus 177 ~~~~~~-----~r~~~~~~~~~~~iyv~G 200 (341)
T PLN02153 177 PGENFE-----KRGGAGFAVVQGKIWVVY 200 (341)
T ss_pred CCCCCC-----CCCcceEEEECCeEEEEe
No 153
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=36.33 E-value=6.1e+02 Score=27.79 Aligned_cols=160 Identities=13% Similarity=0.155 Sum_probs=85.2
Q ss_pred eeEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEe---CCCC---CCee
Q 045656 192 FFYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMP---ESRA---KGEV 265 (802)
Q Consensus 192 Fll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiP---Ess~---sg~l 265 (802)
.....++++||+--. .. -..-++...+...+|+.... +.. .-.+..-+...++++|++= +... ...+
T Consensus 12 ~~~~~~~~vyv~GG~-~~----~~~~~~d~~~~~~~W~~l~~-~p~-~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~ 84 (346)
T TIGR03547 12 TGAIIGDKVYVGLGS-AG----TSWYKLDLKKPSKGWQKIAD-FPG-GPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVF 84 (346)
T ss_pred eEEEECCEEEEEccc-cC----CeeEEEECCCCCCCceECCC-CCC-CCcccceEEEECCEEEEEeCCCCCCCCCcceec
Confidence 344568888886543 11 12333433234567987543 221 1123445677899999992 1111 1111
Q ss_pred -EEEEeccCCcCceeeeeccCCCccCCEEE-EECCEEEEEEeCCCC-----------CCC--------------------
Q 045656 266 -RLYRAVNFPLEWKLEKIIMKKPLVDPFMI-NHDGQYWLFGSDHSG-----------FGT-------------------- 312 (802)
Q Consensus 266 -~LYra~~FP~~We~~~~Ll~~~~vDatI~-~~dG~wwLF~S~~~~-----------~g~-------------------- 312 (802)
.+|+....-.+|+..+..+......++.+ -++|+-|++.-.... ++.
T Consensus 85 ~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (346)
T TIGR03547 85 DDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDY 164 (346)
T ss_pred ccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHc
Confidence 24444434467987543233334445445 689999999742100 000
Q ss_pred CCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccC
Q 045656 313 TQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDC 367 (802)
Q Consensus 313 ~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC 367 (802)
.....+.+| |.-...|+..+..|. .+|.+..+...+|+||.+....
T Consensus 165 ~~~~~v~~Y--Dp~t~~W~~~~~~p~-------~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 165 FWNKNVLSY--DPSTNQWRNLGENPF-------LGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred CccceEEEE--ECCCCceeECccCCC-------CcCCCceEEEECCEEEEEeeee
Confidence 001234444 434678998764441 1355566677899999998654
No 154
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=36.01 E-value=6.6e+02 Score=28.07 Aligned_cols=166 Identities=22% Similarity=0.305 Sum_probs=77.8
Q ss_pred EEECCEEEE-EEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEe-------CCEEEEEeCCC--CC-
Q 045656 194 YLQGNDLYL-FYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDY-------HGQIYMMPESR--AK- 262 (802)
Q Consensus 194 l~~~g~~yl-F~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~-------dG~iYMiPEss--~s- 262 (802)
+++++-+|. |.-..+....+=+|+-.+|.|+|.+|+-.+.. .+.|--||-|=-| .+.+||+=|+. ++
T Consensus 22 FVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwL--td~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~ 99 (367)
T PF12217_consen 22 FVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWL--TDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVASN 99 (367)
T ss_dssp EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EES--S---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT-
T ss_pred eeecCeeecccccccccCccceEEEEEEecCCCCcccCchhh--hhcCCCCCccceeeeeeeeecceeeEEEeehhhhhh
Confidence 346666664 33444445556789999999999999876642 3578788887444 68999997752 22
Q ss_pred --CeeEEEEeccCCc-Cceeeee-ccCC---CccCCEEE----EECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCe
Q 045656 263 --GEVRLYRAVNFPL-EWKLEKI-IMKK---PLVDPFMI----NHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWK 331 (802)
Q Consensus 263 --g~l~LYra~~FP~-~We~~~~-Ll~~---~~vDatI~----~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~ 331 (802)
..-.||.-.-|-. .|+.... .+.. .-+-+|-+ -.+..-+-+.=.+ |+-.-.+|++.+...-.+.
T Consensus 100 km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHn---GD~sPRe~G~~yfs~~~~s-- 174 (367)
T PF12217_consen 100 KMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHN---GDVSPRELGFLYFSDAFAS-- 174 (367)
T ss_dssp -EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE----SSSS-EEEEEEETTTTT---
T ss_pred hhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEecc---CCCCcceeeEEEecccccC--
Confidence 3334666555533 5876432 2221 10111111 1122222333111 3323458886665444321
Q ss_pred eCCCCCeeeCCCCCCcccCCccE--EECCeEEEEcccCC
Q 045656 332 PHKKNPIYNGDKSLGARNGGRPF--VYDGNLYRVGQDCA 368 (802)
Q Consensus 332 ~hp~NPI~~~~~~~~aR~GG~vF--~~dGkLyRp~QdC~ 368 (802)
|.+-+........+|+|-.+- .++|+||+.+.--.
T Consensus 175 --p~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~ 211 (367)
T PF12217_consen 175 --PGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTL 211 (367)
T ss_dssp --TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-
T ss_pred --CcceeeeechhhhccccccchhhhhCCEEEEEEcCcC
Confidence 122222211123567776664 44999999776543
No 155
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=34.57 E-value=1.2e+02 Score=32.44 Aligned_cols=100 Identities=13% Similarity=0.178 Sum_probs=61.2
Q ss_pred EEEEEecccChhhHHHHHHHhcC----CC--CcceEEEEeCCCCCCCCC------------CCCCCCcEEEEEcCCcC--
Q 045656 557 TMLTMTFDARLWNLKMYVKHYSR----CS--SVKEIVVVWNKGEPPKLS------------DLDSAVPVRIRVEKQNS-- 616 (802)
Q Consensus 557 TvvI~Ty~~R~~~L~~~v~hya~----~p--~v~kIvVVWn~~~pP~~~------------~~~s~vPVrv~~~~~NS-- 616 (802)
+|+|-+|..-...|...|+...+ .. .--+|+|+ ++...|... +++..+-|+++..++|.
T Consensus 2 SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vl-dD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~ 80 (254)
T cd04191 2 AIVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFIL-SDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGR 80 (254)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEE-CCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCc
Confidence 68899996444334444443321 21 23688777 655444210 12334557766655542
Q ss_pred ----ccccCccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCC
Q 045656 617 ----LNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPD 658 (802)
Q Consensus 617 ----LNNRF~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~Pd 658 (802)
||+ ++....-+.|-|+.+|-|..+.++.|......-.++|.
T Consensus 81 Kag~l~~-~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~ 125 (254)
T cd04191 81 KAGNIAD-FCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR 125 (254)
T ss_pred cHHHHHH-HHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC
Confidence 333 33322246789999999999999999998887776764
No 156
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=34.48 E-value=6.5e+02 Score=27.57 Aligned_cols=167 Identities=15% Similarity=0.133 Sum_probs=85.0
Q ss_pred eEEECCEEEEEEEeeeccC--CCceEEEEEEeC-CCCCceEeeeeecCCCceeeeEEE-EeCCEEEEEe--CCC------
Q 045656 193 FYLQGNDLYLFYETKNSIT--MQGDIGVAKSVD-KGATWQQLGIALDEDWHLSFPYVF-DYHGQIYMMP--ESR------ 260 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~~~~--~~G~I~va~S~D-~g~tw~~~gvvLde~~HLSyP~VF-~~dG~iYMiP--Ess------ 260 (802)
+...++++|++--...... ......-+...| ...+|+.... ..+......... ..+|++|++= ...
T Consensus 59 ~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~ 136 (346)
T TIGR03547 59 AAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYF 136 (346)
T ss_pred EEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHH
Confidence 5578899999875321110 000122222234 3467987531 233344344444 5799999981 100
Q ss_pred -----------------------------CCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCC
Q 045656 261 -----------------------------AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFG 311 (802)
Q Consensus 261 -----------------------------~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g 311 (802)
....+..|-... .+|+..+.+...+...+++..++|+.|+|.-.. ..+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t--~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~-~~~ 213 (346)
T TIGR03547 137 ADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPST--NQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI-KPG 213 (346)
T ss_pred hhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCC--CceeECccCCCCcCCCceEEEECCEEEEEeeee-CCC
Confidence 024566666433 579876654333456678888999999998431 111
Q ss_pred CCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEccc
Q 045656 312 TTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQD 366 (802)
Q Consensus 312 ~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~Qd 366 (802)
. ...+...|.-+.-...|+..+.-|.-... ...+|-+......+|+||.+.-.
T Consensus 214 ~-~~~~~~~y~~~~~~~~W~~~~~m~~~r~~-~~~~~~~~~a~~~~~~Iyv~GG~ 266 (346)
T TIGR03547 214 L-RTAEVKQYLFTGGKLEWNKLPPLPPPKSS-SQEGLAGAFAGISNGVLLVAGGA 266 (346)
T ss_pred c-cchheEEEEecCCCceeeecCCCCCCCCC-ccccccEEeeeEECCEEEEeecC
Confidence 1 11233333323234579876543311100 00011122245668999988653
No 157
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=34.29 E-value=6.1e+02 Score=30.00 Aligned_cols=146 Identities=21% Similarity=0.294 Sum_probs=77.4
Q ss_pred EEEeccCCcCceeeeec-cCCC-ccCCEEEEECCEEEEEEeCCCCCCCCCCCcEE-EEEEcCCCCCCeeCCCCCeeeCCC
Q 045656 267 LYRAVNFPLEWKLEKII-MKKP-LVDPFMINHDGQYWLFGSDHSGFGTTQNGQLE-IWYSSSPFGPWKPHKKNPIYNGDK 343 (802)
Q Consensus 267 LYra~~FP~~We~~~~L-l~~~-~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~-i~~AdSplGPW~~hp~NPI~~~~~ 343 (802)
||.+.---..|+....- ..-+ ---..+..-.|.-|||.-..+++...+...+. +|.=+--.-.|+.-.. .+
T Consensus 100 Ly~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~----~g-- 173 (521)
T KOG1230|consen 100 LYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEF----GG-- 173 (521)
T ss_pred eeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeecc----CC--
Confidence 45543334678764421 1112 33333444456999998554322211111110 2222222446865321 11
Q ss_pred CCCcccCCccEEECCeEEEEcc--cCC--CCCCceEEEEEeccCCccceEEeccccCCCCCC-ccccccccCCCCCeEEE
Q 045656 344 SLGARNGGRPFVYDGNLYRVGQ--DCA--ESYGRRVRTFKVEILTKNEYKELEGRNAWNGAR-YHHLDAQQLSSGEWIAV 418 (802)
Q Consensus 344 ~~~aR~GG~vF~~dGkLyRp~Q--dC~--~~YG~~L~l~~It~Lt~~~y~E~~~~~~w~~~~-~Hhld~~~l~~g~~i~v 418 (802)
..++|.|.|++.+..+|+++.. |.+ -.|-.-|.++.++.. +..+-...-+||..| =|.+-+. |. +.|.|
T Consensus 174 ~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdty---kW~Klepsga~PtpRSGcq~~vt--pq-g~i~v 247 (521)
T KOG1230|consen 174 GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTY---KWSKLEPSGAGPTPRSGCQFSVT--PQ-GGIVV 247 (521)
T ss_pred CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccce---eeeeccCCCCCCCCCCcceEEec--CC-CcEEE
Confidence 2358999999999999999753 333 367777888877542 222323333388866 4444444 12 46888
Q ss_pred EeCccc
Q 045656 419 MDGDRA 424 (802)
Q Consensus 419 vDG~r~ 424 (802)
+-|+--
T Consensus 248 yGGYsK 253 (521)
T KOG1230|consen 248 YGGYSK 253 (521)
T ss_pred EcchhH
Confidence 888763
No 158
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=34.07 E-value=74 Score=29.00 Aligned_cols=99 Identities=13% Similarity=0.013 Sum_probs=55.7
Q ss_pred CceEEEEEecccChhhHHHHHHHhcCCCCc-ceEEEEeCCCCCCCCC---CCCCC-CcEEEEEcCCcC--ccccCccCCC
Q 045656 554 SQFTMLTMTFDARLWNLKMYVKHYSRCSSV-KEIVVVWNKGEPPKLS---DLDSA-VPVRIRVEKQNS--LNNRFKLDPL 626 (802)
Q Consensus 554 ~qFTvvI~Ty~~R~~~L~~~v~hya~~p~v-~kIvVVWn~~~pP~~~---~~~s~-vPVrv~~~~~NS--LNNRF~P~~~ 626 (802)
.+++|+|-||+ +...|.+.|+.+.+-..- .||+||=+........ ..... ..+.....+.|. -.+|=.-...
T Consensus 3 ~~~siiip~~n-~~~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (291)
T COG0463 3 PKVSVVIPTYN-EEEYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKDVRVIRLINERNGGLGAARNAGLEY 81 (291)
T ss_pred ccEEEEEeccc-hhhhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhcceEEEeecccCCChHHHHHhhHHh
Confidence 47899999998 557788888888665444 3766663332222111 11111 123333333332 1222222233
Q ss_pred CCccEEEEecCCcccCHHHHHHHHHHHh
Q 045656 627 IKTRGVLELDDDIMMTCDDIERGFQVWR 654 (802)
Q Consensus 627 I~T~AVLslDDDv~l~~deLeFAF~vWr 654 (802)
...|-|+.+|+|.. ..+.+...+....
T Consensus 82 ~~~~~~~~~d~d~~-~~~~~~~~~~~~~ 108 (291)
T COG0463 82 ARGDYIVFLDADDQ-HPPELIPLVAAGG 108 (291)
T ss_pred ccCCEEEEEccCCC-CCHHHHHHHHHhh
Confidence 34499999999999 8888776444443
No 159
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.96 E-value=85 Score=36.47 Aligned_cols=106 Identities=20% Similarity=0.223 Sum_probs=76.2
Q ss_pred EEEEEec--ccChhhHHHHHHHhcCCC--CcceEEEEeCCCCCCCCC-CCCCCCcEEEEEcCCc-C-ccccCccCCCCCc
Q 045656 557 TMLTMTF--DARLWNLKMYVKHYSRCS--SVKEIVVVWNKGEPPKLS-DLDSAVPVRIRVEKQN-S-LNNRFKLDPLIKT 629 (802)
Q Consensus 557 TvvI~Ty--~~R~~~L~~~v~hya~~p--~v~kIvVVWn~~~pP~~~-~~~s~vPVrv~~~~~N-S-LNNRF~P~~~I~T 629 (802)
|-||-|| ++|..+|+.++.-+.++| .++|||+|=...+.|..- ++..-..|++.+..+. . +-+|-+=-+.-..
T Consensus 126 TsviITfHNEARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dped~~~L~ri~kvr~LRN~~ReGLirSRvrGAdvA~a 205 (559)
T KOG3738|consen 126 TSVIITFHNEARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDPEDGKLLKRIPKVRVLRNNEREGLIRSRVRGADVAQA 205 (559)
T ss_pred ceEEEEeccHHHHHHHHHHHHHHcCChHHhhheeEEecCCCCChHHHHHHhhhheeeeecccchhhhhhhhccccccccc
Confidence 6677777 569988988888888887 689999996555533211 2222224666554332 2 5677777777777
Q ss_pred cEEEEecCCcccCHHHHHHHHHHHhhCCCceee
Q 045656 630 RGVLELDDDIMMTCDDIERGFQVWRQHPDRIVG 662 (802)
Q Consensus 630 ~AVLslDDDv~l~~deLeFAF~vWr~~PdRLVG 662 (802)
.-+..||--..++.+=||=-.+-=.+++.|+|-
T Consensus 206 ~vltFLDSHcEvN~~WLePLL~Rvaed~trvVs 238 (559)
T KOG3738|consen 206 TVLTFLDSHCEVNEGWLEPLLERVAEDTTRVVS 238 (559)
T ss_pred eEEEEEecceeecchhhHHHHHHHhhcccceee
Confidence 788899999999999888888888899999885
No 160
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=32.53 E-value=7.2e+02 Score=27.49 Aligned_cols=197 Identities=18% Similarity=0.222 Sum_probs=101.7
Q ss_pred EEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEE-eCCEEEEEeCCC-CCCeeEEEEeccCCcCceee
Q 045656 203 FYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFD-YHGQIYMMPESR-AKGEVRLYRAVNFPLEWKLE 280 (802)
Q Consensus 203 F~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~-~dG~iYMiPEss-~sg~l~LYra~~FP~~We~~ 280 (802)
|.-.+.. ...+.|.++..+++..+++..+.+-... .-|| ..+. .+..+|..=|.. ..+.|..|+..+--.+.+..
T Consensus 3 ~vgsy~~-~~~~gI~~~~~d~~~g~l~~~~~~~~~~-~Ps~-l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 3 YVGSYTN-GKGGGIYVFRFDEETGTLTLVQTVAEGE-NPSW-LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEECCS-SSSTEEEEEEEETTTTEEEEEEEEEESS-SECC-EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred EEEcCCC-CCCCcEEEEEEcCCCCCceEeeeecCCC-CCce-EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence 4444433 2346788888766666777666522221 1111 1232 345688888887 88999999975421233322
Q ss_pred eeccCCCccCCEEEEE--CCEEEEEEeCCCCCCCCCCCcEEEEEEcCC--CCC---CeeC---CCCCeeeCCCCCCcccC
Q 045656 281 KIIMKKPLVDPFMINH--DGQYWLFGSDHSGFGTTQNGQLEIWYSSSP--FGP---WKPH---KKNPIYNGDKSLGARNG 350 (802)
Q Consensus 281 ~~Ll~~~~vDatI~~~--dG~wwLF~S~~~~~g~~~n~~L~i~~AdSp--lGP---W~~h---p~NPI~~~~~~~~aR~G 350 (802)
..... .-..|+-+.. +|++ ||.++. ..+.+.++--++. ++. -..| ..+|.. ...++++
T Consensus 80 ~~~~~-~g~~p~~i~~~~~g~~-l~vany------~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~r----q~~~h~H 147 (345)
T PF10282_consen 80 NSVPS-GGSSPCHIAVDPDGRF-LYVANY------GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDR----QEGPHPH 147 (345)
T ss_dssp EEEEE-SSSCEEEEEECTTSSE-EEEEET------TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTT----TSSTCEE
T ss_pred eeecc-CCCCcEEEEEecCCCE-EEEEEc------cCCeEEEEEccCCcccceeeeecccCCCCCcccc----cccccce
Confidence 22111 1234444444 5554 444331 2345666554432 111 1111 112211 1234555
Q ss_pred CccEEECCeEEEEcccCCCCCCceEEEEEeccCCccceEEeccccCCCCCCccccccccCCCCCeEEEEeC
Q 045656 351 GRPFVYDGNLYRVGQDCAESYGRRVRTFKVEILTKNEYKELEGRNAWNGARYHHLDAQQLSSGEWIAVMDG 421 (802)
Q Consensus 351 G~vF~~dGkLyRp~QdC~~~YG~~L~l~~It~Lt~~~y~E~~~~~~w~~~~~Hhld~~~l~~g~~i~vvDG 421 (802)
.-.|..||+.....+-. ...|.+++++.-+. +.++......-.+.+++|+-+++ +++.+.|+.-
T Consensus 148 ~v~~~pdg~~v~v~dlG----~D~v~~~~~~~~~~-~l~~~~~~~~~~G~GPRh~~f~p--dg~~~Yv~~e 211 (345)
T PF10282_consen 148 QVVFSPDGRFVYVPDLG----ADRVYVYDIDDDTG-KLTPVDSIKVPPGSGPRHLAFSP--DGKYAYVVNE 211 (345)
T ss_dssp EEEE-TTSSEEEEEETT----TTEEEEEEE-TTS--TEEEEEEEECSTTSSEEEEEE-T--TSSEEEEEET
T ss_pred eEEECCCCCEEEEEecC----CCEEEEEEEeCCCc-eEEEeeccccccCCCCcEEEEcC--CcCEEEEecC
Confidence 55566688877766542 57899999965332 24443333344578999999986 6677777763
No 161
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=31.28 E-value=7.2e+02 Score=27.06 Aligned_cols=160 Identities=15% Similarity=0.195 Sum_probs=83.8
Q ss_pred eEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEEe--CCCCCCeeEEEEe
Q 045656 193 FYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMP--ESRAKGEVRLYRA 270 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiP--Ess~sg~l~LYra 270 (802)
....++++|++--..+.. ....+.++ +-...+|+........+ -..+.+...++++|++= .......+..|-.
T Consensus 119 ~~~~~~~iYv~GG~~~~~-~~~~v~~y--d~~~~~W~~~~~~p~~~--r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~ 193 (323)
T TIGR03548 119 ACYKDGTLYVGGGNRNGK-PSNKSYLF--NLETQEWFELPDFPGEP--RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSP 193 (323)
T ss_pred EEEECCEEEEEeCcCCCc-cCceEEEE--cCCCCCeeECCCCCCCC--CCcceEEEECCEEEEEcCCCCccccceEEEec
Confidence 456788999986532211 11233332 22346898755322222 23344567789999992 1111122333332
Q ss_pred ccCCcCceeeeecc--CCC---ccCCEEEEECCEEEEEEeCCCC-C---------------------------CC-CCCC
Q 045656 271 VNFPLEWKLEKIIM--KKP---LVDPFMINHDGQYWLFGSDHSG-F---------------------------GT-TQNG 316 (802)
Q Consensus 271 ~~FP~~We~~~~Ll--~~~---~vDatI~~~dG~wwLF~S~~~~-~---------------------------g~-~~n~ 316 (802)
--.+|+..+.+. ..+ ..-+++...+++.|+|.-.... + .. ..++
T Consensus 194 --~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (323)
T TIGR03548 194 --KKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNR 271 (323)
T ss_pred --CCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCc
Confidence 225797655432 112 2334455568898888743100 0 00 0013
Q ss_pred cEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEcccCC
Q 045656 317 QLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQDCA 368 (802)
Q Consensus 317 ~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~QdC~ 368 (802)
.+.+| |-....|+.-+..| ..+|.+..+...+++||.+..++.
T Consensus 272 ~v~~y--d~~~~~W~~~~~~p-------~~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 272 KILIY--NVRTGKWKSIGNSP-------FFARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred eEEEE--ECCCCeeeEccccc-------ccccCchheEEECCEEEEEecccc
Confidence 45555 33355798766433 125777778888999999987654
No 162
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=31.17 E-value=3.1e+02 Score=34.13 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=64.2
Q ss_pred CCceEEEEEecccCh----hhHHHHHHHhcCCCCc--ceEEEEeCCCCCCCCC------------CCCCCCcEEEEEcCC
Q 045656 553 YSQFTMLTMTFDARL----WNLKMYVKHYSRCSSV--KEIVVVWNKGEPPKLS------------DLDSAVPVRIRVEKQ 614 (802)
Q Consensus 553 ~~qFTvvI~Ty~~R~----~~L~~~v~hya~~p~v--~kIvVVWn~~~pP~~~------------~~~s~vPVrv~~~~~ 614 (802)
..+-+|+|-+|+... ..|+..++.+.+..+- -+|+|+ ++...|... +......|.+++.++
T Consensus 123 ~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vL-dD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~ 201 (691)
T PRK05454 123 EARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFIL-SDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRR 201 (691)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEE-ECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCc
Confidence 457899999997433 2355555555554443 367666 554443311 112234577776554
Q ss_pred c------CccccCccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCC
Q 045656 615 N------SLNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPD 658 (802)
Q Consensus 615 N------SLNNRF~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~Pd 658 (802)
| ++++ |.-...-+.|-|+.+|-|..++.|-|.........+|+
T Consensus 202 n~~~KaGNl~~-~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~ 250 (691)
T PRK05454 202 NVGRKAGNIAD-FCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR 250 (691)
T ss_pred CCCccHHHHHH-HHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC
Confidence 4 2332 22222235699999999999999999999988877775
No 163
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=30.08 E-value=1.6e+02 Score=32.97 Aligned_cols=109 Identities=18% Similarity=0.199 Sum_probs=69.8
Q ss_pred CCceEEEEEecccChhhHHHHHHHhcCCCCcc-eEEEEeCCCCCCCCCCC---CCCC--cEEEEEc-CC-----cCcccc
Q 045656 553 YSQFTMLTMTFDARLWNLKMYVKHYSRCSSVK-EIVVVWNKGEPPKLSDL---DSAV--PVRIRVE-KQ-----NSLNNR 620 (802)
Q Consensus 553 ~~qFTvvI~Ty~~R~~~L~~~v~hya~~p~v~-kIvVVWn~~~pP~~~~~---~s~v--PVrv~~~-~~-----NSLNNR 620 (802)
..+.+++|-+|+.....+.+.++...+.++-. ||+||=.+.+.+..... .... -++++.. .+ +.+|+-
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~~ 132 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNG 132 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEeccccCccchHHHHHH
Confidence 36899999999755558888888888776554 77777554443332211 1111 3444321 12 234444
Q ss_pred CccCCCCCccEEEEecCCcccCHHHHHHHHHHHhhCCCc-eeecc
Q 045656 621 FKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQHPDR-IVGFY 664 (802)
Q Consensus 621 F~P~~~I~T~AVLslDDDv~l~~deLeFAF~vWr~~PdR-LVGF~ 664 (802)
+. .-+.|-|+.+|-|..+.+|.|..+..-....+.- ++|-+
T Consensus 133 l~---~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~ 174 (439)
T COG1215 133 LK---RAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTP 174 (439)
T ss_pred Hh---hcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCc
Confidence 33 3449999999999999999999887766666655 44433
No 164
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=29.16 E-value=7.8e+02 Score=26.79 Aligned_cols=161 Identities=12% Similarity=0.081 Sum_probs=79.1
Q ss_pred eEEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceE-eeeeecCCCceeeeEEEEeCCEEEEEe--C-CCCCCeeEEE
Q 045656 193 FYLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQ-LGIALDEDWHLSFPYVFDYHGQIYMMP--E-SRAKGEVRLY 268 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~-~gvvLde~~HLSyP~VF~~dG~iYMiP--E-ss~sg~l~LY 268 (802)
....++++|++--. +.......+..+.. +...|+. ...+-+.|.......+...++++|++= + ...... +|
T Consensus 68 ~~~~~~~lyviGG~-~~~~~~~~v~~~d~--~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~--v~ 142 (323)
T TIGR03548 68 SVSVENGIYYIGGS-NSSERFSSVYRITL--DESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNK--SY 142 (323)
T ss_pred EEEECCEEEEEcCC-CCCCCceeEEEEEE--cCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCce--EE
Confidence 34568888887542 21111223433332 2345521 011112344444556667799999992 1 112233 44
Q ss_pred EeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcc
Q 045656 269 RAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGAR 348 (802)
Q Consensus 269 ra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR 348 (802)
+...--.+|+..+.+...+-..+++..++++.|+|.-.. +. ....+.+| |--...|+..+..+.... ..++
T Consensus 143 ~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~---~~-~~~~~~~y--d~~~~~W~~~~~~~~~~~---p~~~ 213 (323)
T TIGR03548 143 LFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGS---NI-AYTDGYKY--SPKKNQWQKVADPTTDSE---PISL 213 (323)
T ss_pred EEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCC---Cc-cccceEEE--ecCCCeeEECCCCCCCCC---ceec
Confidence 443334689865543323345667778899999998421 11 11123333 333567987653221111 1123
Q ss_pred cCCccE-EECCeEEEEcccC
Q 045656 349 NGGRPF-VYDGNLYRVGQDC 367 (802)
Q Consensus 349 ~GG~vF-~~dGkLyRp~QdC 367 (802)
.+...+ ..++++|.+....
T Consensus 214 ~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 214 LGAASIKINESLLLCIGGFN 233 (323)
T ss_pred cceeEEEECCCEEEEECCcC
Confidence 233323 3478888877543
No 165
>PHA02713 hypothetical protein; Provisional
Probab=28.13 E-value=1.1e+03 Score=28.28 Aligned_cols=153 Identities=9% Similarity=0.077 Sum_probs=84.6
Q ss_pred eeeEEECCEEEEEEEeeeccCCCceEEEEEEeC-CCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCCC---------
Q 045656 191 PFFYLQGNDLYLFYETKNSITMQGDIGVAKSVD-KGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPESR--------- 260 (802)
Q Consensus 191 PFll~~~g~~ylF~E~~~~~~~~G~I~va~S~D-~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEss--------- 260 (802)
+-....+|++|++--. + +.....-.+..| ...+|+.... .+...+..-+...+|++|.+=-..
T Consensus 345 ~~~~~~~g~IYviGG~-~---~~~~~~sve~Ydp~~~~W~~~~~---mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~ 417 (557)
T PHA02713 345 FSLAVIDDTIYAIGGQ-N---GTNVERTIECYTMGDDKWKMLPD---MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVH 417 (557)
T ss_pred eeEEEECCEEEEECCc-C---CCCCCceEEEEECCCCeEEECCC---CCcccccccEEEECCEEEEEeCCCccccccccc
Confidence 3456788999997643 1 111111223333 3468987553 233334445556799999983111
Q ss_pred ------------CCCeeEEEEeccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCC-CCcEEEEEEcCCC
Q 045656 261 ------------AKGEVRLYRAVNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQ-NGQLEIWYSSSPF 327 (802)
Q Consensus 261 ------------~sg~l~LYra~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~-n~~L~i~~AdSpl 327 (802)
.... ++++..--.+|+..+.+. .+-..+.+.-++|+.|.++... +... ...+..| |--.
T Consensus 418 ~~~~~~~~~~~~~~~~--ve~YDP~td~W~~v~~m~-~~r~~~~~~~~~~~IYv~GG~~---~~~~~~~~ve~Y--dp~~ 489 (557)
T PHA02713 418 HMNSIDMEEDTHSSNK--VIRYDTVNNIWETLPNFW-TGTIRPGVVSHKDDIYVVCDIK---DEKNVKTCIFRY--NTNT 489 (557)
T ss_pred ccccccccccccccce--EEEECCCCCeEeecCCCC-cccccCcEEEECCEEEEEeCCC---CCCccceeEEEe--cCCC
Confidence 0122 444433335797655532 2345677888899999997321 1100 1112223 3223
Q ss_pred -CCCeeCCCCCeeeCCCCCCcccCCccEEECCeEEEEccc
Q 045656 328 -GPWKPHKKNPIYNGDKSLGARNGGRPFVYDGNLYRVGQD 366 (802)
Q Consensus 328 -GPW~~hp~NPI~~~~~~~~aR~GG~vF~~dGkLyRp~Qd 366 (802)
..|+..+.-| ..|.+..+...+|+||.....
T Consensus 490 ~~~W~~~~~m~--------~~r~~~~~~~~~~~iyv~Gg~ 521 (557)
T PHA02713 490 YNGWELITTTE--------SRLSALHTILHDNTIMMLHCY 521 (557)
T ss_pred CCCeeEccccC--------cccccceeEEECCEEEEEeee
Confidence 5799776433 257777778889999998763
No 166
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=23.19 E-value=1.3e+03 Score=27.29 Aligned_cols=160 Identities=16% Similarity=0.148 Sum_probs=90.6
Q ss_pred EEECCEEEEEEEeeeccCCCceEEEEEEeCCCCCceEeeeeecCCCceeeeEEEEeCCEEEEE-e---CCCCCCeeEEEE
Q 045656 194 YLQGNDLYLFYETKNSITMQGDIGVAKSVDKGATWQQLGIALDEDWHLSFPYVFDYHGQIYMM-P---ESRAKGEVRLYR 269 (802)
Q Consensus 194 l~~~g~~ylF~E~~~~~~~~G~I~va~S~D~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMi-P---Ess~sg~l~LYr 269 (802)
...++++|||--.-......-+|-.+ +-...+|..+.+.=+.|--.+.=-+..++.++|+. . ...-...+-+|.
T Consensus 119 ~~~~~~l~lfGG~~~~~~~~~~l~~~--d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d 196 (482)
T KOG0379|consen 119 SAVGDKLYLFGGTDKKYRNLNELHSL--DLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYD 196 (482)
T ss_pred EEECCeEEEEccccCCCCChhheEec--cCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeec
Confidence 34567888876553222222234333 22457888776533433223333456778889998 3 333456666766
Q ss_pred eccCCcCceeeeeccCC--CccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCc
Q 045656 270 AVNFPLEWKLEKIIMKK--PLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGA 347 (802)
Q Consensus 270 a~~FP~~We~~~~Ll~~--~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~a 347 (802)
.+. .+|+...+.-+. +--+.++..+++++|||.-.. .+......++++ |--...|++-+.+. + ...+
T Consensus 197 ~~~--~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~--~~~~~l~D~~~l--dl~~~~W~~~~~~g---~--~p~~ 265 (482)
T KOG0379|consen 197 LET--STWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGD--DGDVYLNDVHIL--DLSTWEWKLLPTGG---D--LPSP 265 (482)
T ss_pred ccc--ccceecccCCCCCCCCCCceEEEECCeEEEEeccc--cCCceecceEee--ecccceeeeccccC---C--CCCC
Confidence 655 469876664333 468999999999999998542 011112233332 22235677433222 1 2357
Q ss_pred ccCCccEEECCeEEEEccc
Q 045656 348 RNGGRPFVYDGNLYRVGQD 366 (802)
Q Consensus 348 R~GG~vF~~dGkLyRp~Qd 366 (802)
|.+......+.+++.+..+
T Consensus 266 R~~h~~~~~~~~~~l~gG~ 284 (482)
T KOG0379|consen 266 RSGHSLTVSGDHLLLFGGG 284 (482)
T ss_pred cceeeeEEECCEEEEEcCC
Confidence 8888888667677766554
No 167
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=22.51 E-value=2.6e+02 Score=31.69 Aligned_cols=110 Identities=18% Similarity=0.143 Sum_probs=61.1
Q ss_pred CccEEEEecCCcccCHHHHHHHHHHH-hhCCCceeecccccccCCCCCccccee--ccc-Ccccceeeccceeeehhhhh
Q 045656 628 KTRGVLELDDDIMMTCDDIERGFQVW-RQHPDRIVGFYPRLVNGSPLRYRGEKY--ARR-HKGYNMILTGAAFVDSQIAF 703 (802)
Q Consensus 628 ~T~AVLslDDDv~l~~deLeFAF~vW-r~~PdRLVGF~~R~h~~~~~~y~~~~y--~~~-~~~YSMVLTgaAF~Hr~Y~~ 703 (802)
..+-|+-+|||+.+..+.|-.=.+-. ..-++.++|..-............|+. ..+ ...|---..|..++
T Consensus 187 ~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y~~~~YP~Y~sG~gYv------ 260 (349)
T KOG2287|consen 187 DAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESEYPCSVYPPYASGPGYV------ 260 (349)
T ss_pred cceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHHCCCCCCCCcCCCceeE------
Confidence 45678999999999999998777766 455677888655431100000000110 111 12333334444333
Q ss_pred hhccchhHHHHHHh--hccCCCchhhHHHHHHHHhhCCCccccc
Q 045656 704 NRYWSEQAKAGREF--VDKFFNCEDVLLNYLYANASASKTVEYV 745 (802)
Q Consensus 704 ~~Y~~~~p~~iR~~--VDe~~NCEDIaMNFLVS~~T~~~pv~~v 745 (802)
.+.+..+.+.+- --+.+.=||++|.-.++...|..|+.+.
T Consensus 261 --is~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~ 302 (349)
T KOG2287|consen 261 --ISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHP 302 (349)
T ss_pred --ecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCc
Confidence 122222222221 1123567999999999999887776543
No 168
>PHA02790 Kelch-like protein; Provisional
Probab=21.64 E-value=1.3e+03 Score=26.92 Aligned_cols=141 Identities=14% Similarity=0.177 Sum_probs=81.6
Q ss_pred eEEECCEEEEEEEeeeccCCCceEEEEEEeC-CCCCceEeeeeecCCCceeeeEEEEeCCEEEEEeCC-CCCCeeEEEEe
Q 045656 193 FYLQGNDLYLFYETKNSITMQGDIGVAKSVD-KGATWQQLGIALDEDWHLSFPYVFDYHGQIYMMPES-RAKGEVRLYRA 270 (802)
Q Consensus 193 ll~~~g~~ylF~E~~~~~~~~G~I~va~S~D-~g~tw~~~gvvLde~~HLSyP~VF~~dG~iYMiPEs-s~sg~l~LYra 270 (802)
....++++|+.--. +. .... +..| ...+|+.... | +.....+-+...+|++|.+=-. .....+..|-.
T Consensus 314 ~v~~~~~iYviGG~-~~---~~sv---e~ydp~~n~W~~~~~-l--~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp 383 (480)
T PHA02790 314 GVPANNKLYVVGGL-PN---PTSV---ERWFHGDAAWVNMPS-L--LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLP 383 (480)
T ss_pred EEEECCEEEEECCc-CC---CCce---EEEECCCCeEEECCC-C--CCCCcccEEEEECCEEEEecCcCCCCccEEEEeC
Confidence 45678888886542 11 1112 2223 3457987543 2 3334566777889999999221 11234555542
Q ss_pred ccCCcCceeeeeccCCCccCCEEEEECCEEEEEEeCCCCCCCCCCCcEEEEEEcCCCCCCeeCCCCCeeeCCCCCCcccC
Q 045656 271 VNFPLEWKLEKIIMKKPLVDPFMINHDGQYWLFGSDHSGFGTTQNGQLEIWYSSSPFGPWKPHKKNPIYNGDKSLGARNG 350 (802)
Q Consensus 271 ~~FP~~We~~~~Ll~~~~vDatI~~~dG~wwLF~S~~~~~g~~~n~~L~i~~AdSplGPW~~hp~NPI~~~~~~~~aR~G 350 (802)
--.+|+..+. +..+...+++.-++|+-|+++. ...+| +--.+.|+.-+.-| ..|-+
T Consensus 384 --~~~~W~~~~~-m~~~r~~~~~~~~~~~IYv~GG-----------~~e~y--dp~~~~W~~~~~m~--------~~r~~ 439 (480)
T PHA02790 384 --NHDQWQFGPS-TYYPHYKSCALVFGRRLFLVGR-----------NAEFY--CESSNTWTLIDDPI--------YPRDN 439 (480)
T ss_pred --CCCEEEeCCC-CCCccccceEEEECCEEEEECC-----------ceEEe--cCCCCcEeEcCCCC--------CCccc
Confidence 2257976544 3334456677788999999862 12233 22357898765322 14555
Q ss_pred CccEEECCeEEEEcccC
Q 045656 351 GRPFVYDGNLYRVGQDC 367 (802)
Q Consensus 351 G~vF~~dGkLyRp~QdC 367 (802)
....+.+|++|......
T Consensus 440 ~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 440 PELIIVDNKLLLIGGFY 456 (480)
T ss_pred cEEEEECCEEEEECCcC
Confidence 55667799999998643
No 169
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=20.62 E-value=1.7e+02 Score=29.22 Aligned_cols=98 Identities=10% Similarity=0.073 Sum_probs=55.5
Q ss_pred EEEEecccChhhHHHHHHHhcCCCCcceEEEEeCCCCCCCCC-CCC---CCCcEEEEEcC---Cc-----CccccCccCC
Q 045656 558 MLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLS-DLD---SAVPVRIRVEK---QN-----SLNNRFKLDP 625 (802)
Q Consensus 558 vvI~Ty~~R~~~L~~~v~hya~~p~v~kIvVVWn~~~pP~~~-~~~---s~vPVrv~~~~---~N-----SLNNRF~P~~ 625 (802)
|||-+|+ ....|...|+.+.+...--+|+|| ++...+... ... ....|+++... .| .+|.=+.-..
T Consensus 1 ViIp~~N-e~~~l~~~l~sl~~~~~~~eIivv-dd~S~D~t~~~~~~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~ 78 (191)
T cd06436 1 VLVPCLN-EEAVIQRTLASLLRNKPNFLVLVI-DDASDDDTAGIVRLAITDSRVHLLRRHLPNARTGKGDALNAAYDQIR 78 (191)
T ss_pred CEEeccc-cHHHHHHHHHHHHhCCCCeEEEEE-ECCCCcCHHHHHhheecCCcEEEEeccCCcCCCCHHHHHHHHHHHHh
Confidence 5788997 567788888888664323467777 443333211 111 12346665432 11 1222121110
Q ss_pred --------CCCccEEEEecCCcccCHHHHHHHHHHHhhCCC
Q 045656 626 --------LIKTRGVLELDDDIMMTCDDIERGFQVWRQHPD 658 (802)
Q Consensus 626 --------~I~T~AVLslDDDv~l~~deLeFAF~vWr~~Pd 658 (802)
..+.|-|+.+|.|..++++.|+..-+.. ++|+
T Consensus 79 ~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~-~~~~ 118 (191)
T cd06436 79 QILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF-SDPR 118 (191)
T ss_pred hhccccccCCCccEEEEECCCCCcCHhHHHHHHHhh-cCCc
Confidence 1234789999999999999999854433 4553
No 170
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.36 E-value=2.5e+02 Score=29.43 Aligned_cols=144 Identities=12% Similarity=0.070 Sum_probs=74.9
Q ss_pred cccccCCcccchhhHHHHHHHhhheeeeeeeeeeCCCCCCcccccCCCC--CceEEEEEecccChhhHHHHHHH----hc
Q 045656 505 QGKIKPNTSIGRLVLAVIFVAGVALTCTGVKFIYGGNGADEAYMWKGHY--SQFTMLTMTFDARLWNLKMYVKH----YS 578 (802)
Q Consensus 505 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gg~g~~~~~~~~g~~--~qFTvvI~Ty~~R~~~L~~~v~h----ya 578 (802)
+.+...|-|++.|++.+.+.+.++ +.+..+.+ +-.|+|.++.... ++...-|.|.+ ++|.++|.. |+
T Consensus 3 ~kk~~~n~WKw~f~iLLAln~l~~-~~i~~~vl---sp~ee~t~~~~a~~~~~~~fqitttr---~~LN~li~syl~~~~ 75 (197)
T COG4698 3 RKKGTLNYWKWLFFILLALNTLLA-VLIALFVL---SPREEPTHLEDASEKSEKSFQITTTR---SQLNELINSYLEDYQ 75 (197)
T ss_pred CccccccHHHHHHHHHHHHHHHHH-HHhheeec---cCCCCCchhhccCcccceeEEEEccH---HHHHHHHHHHHHHhh
Confidence 456667778888877777766665 33344555 3334444433211 33333333443 234444554 44
Q ss_pred CCCCcceEEEEeCCCC-CCCCCCCCCCCcEEEEEcCCcCccccCccCCCCCccEEEEecC----CcccCHHHHHHHHHHH
Q 045656 579 RCSSVKEIVVVWNKGE-PPKLSDLDSAVPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDD----DIMMTCDDIERGFQVW 653 (802)
Q Consensus 579 ~~p~v~kIvVVWn~~~-pP~~~~~~s~vPVrv~~~~~NSLNNRF~P~~~I~T~AVLslDD----Dv~l~~deLeFAF~vW 653 (802)
+-.-=-|+.|-=+... ...-..+-..||+.|- |.|.-.--.+-+|++++ -..+|.+++.-=..--
T Consensus 76 tee~~YKv~it~~~v~f~a~~klfG~~vpl~I~----------f~P~v~~NG~i~L~V~~fS~G~L~LPis~VLqym~s~ 145 (197)
T COG4698 76 TEEMPYKVYITDEHVEFEANYKLFGTQVPLYIY----------FEPTVLQNGDIELSVTSFSLGGLPLPISHVLQYMKSM 145 (197)
T ss_pred hccCCeEEEEecCeEEEEEEhhhhCccccEEEE----------EcceeecCCcEEEEEEEeecCCccCCHHHHHHHHHhh
Confidence 3222225554322111 1111245567999987 77776666777888887 3357777765433322
Q ss_pred hhCCCceeeccc
Q 045656 654 RQHPDRIVGFYP 665 (802)
Q Consensus 654 r~~PdRLVGF~~ 665 (802)
-..|+=++=.+-
T Consensus 146 y~lPefV~v~Pk 157 (197)
T COG4698 146 YDLPEFVVVYPK 157 (197)
T ss_pred ccCCceEEEccC
Confidence 345665554433
No 171
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=20.34 E-value=1.1e+02 Score=30.19 Aligned_cols=31 Identities=32% Similarity=0.255 Sum_probs=25.6
Q ss_pred EEEecCCcccCHHHHHHHHHHHhhCCCc-eeec
Q 045656 632 VLELDDDIMMTCDDIERGFQVWRQHPDR-IVGF 663 (802)
Q Consensus 632 VLslDDDv~l~~deLeFAF~vWr~~PdR-LVGF 663 (802)
|+.+|+|..++.+.++.....++ +|+- +|+.
T Consensus 2 v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~ 33 (193)
T PF13632_consen 2 VLFLDADTRLPPDFLERLVAALE-DPKVDAVQG 33 (193)
T ss_pred EEEEcCCCCCChHHHHHHHHHHh-CCCceEEEc
Confidence 78999999999999999999998 6643 4443
Done!