Query 045657
Match_columns 227
No_of_seqs 176 out of 2059
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:10:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045657.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045657hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.4E-49 2.9E-54 387.7 18.7 216 10-227 6-236 (1153)
2 PLN03194 putative disease resi 100.0 5.4E-38 1.2E-42 242.6 13.4 137 8-161 18-156 (187)
3 PF01582 TIR: TIR domain; Int 99.9 1.3E-23 2.8E-28 159.6 1.5 132 19-150 1-140 (141)
4 smart00255 TIR Toll - interleu 99.9 1.6E-21 3.4E-26 147.4 9.9 136 16-153 1-138 (140)
5 PF13676 TIR_2: TIR domain; PD 99.7 4.3E-18 9.4E-23 121.9 2.3 87 19-111 1-87 (102)
6 KOG3678 SARM protein (with ste 99.0 1.3E-09 2.7E-14 95.2 7.5 93 13-111 609-710 (832)
7 KOG4658 Apoptotic ATPase [Sign 98.7 1.6E-08 3.6E-13 96.8 5.0 48 178-227 161-211 (889)
8 PF08937 DUF1863: MTH538 TIR-l 98.6 1.1E-07 2.4E-12 71.0 5.3 88 17-109 1-106 (130)
9 PF08357 SEFIR: SEFIR domain; 98.1 7E-06 1.5E-10 62.6 5.1 64 18-81 2-70 (150)
10 PTZ00202 tuzin; Provisional 97.7 7.1E-05 1.5E-09 66.3 5.9 52 170-221 257-309 (550)
11 PF05496 RuvB_N: Holliday junc 97.6 0.00014 2.9E-09 59.0 5.5 57 170-226 19-78 (233)
12 PRK00080 ruvB Holliday junctio 97.5 0.0001 2.2E-09 63.5 4.4 52 173-224 23-77 (328)
13 TIGR02928 orc1/cdc6 family rep 97.5 0.00014 3E-09 63.3 5.2 51 173-223 13-65 (365)
14 PRK00411 cdc6 cell division co 97.5 0.00014 3E-09 64.0 4.6 51 173-223 28-80 (394)
15 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00047 1E-08 59.8 4.2 49 176-224 52-104 (361)
16 PRK13342 recombination factor 97.0 0.00071 1.5E-08 60.2 4.2 50 174-225 11-63 (413)
17 TIGR01242 26Sp45 26S proteasom 97.0 0.00077 1.7E-08 58.9 3.9 52 174-225 121-183 (364)
18 PF10137 TIR-like: Predicted n 97.0 0.0032 7E-08 46.5 6.5 59 19-80 2-61 (125)
19 PRK03992 proteasome-activating 96.8 0.0015 3.2E-08 57.8 4.6 52 174-225 130-192 (389)
20 PRK04195 replication factor C 96.8 0.0014 3.1E-08 59.4 4.1 50 173-222 12-63 (482)
21 COG2255 RuvB Holliday junction 96.7 0.0022 4.8E-08 53.6 4.6 55 172-226 23-80 (332)
22 COG2256 MGS1 ATPase related to 96.7 0.0018 4E-08 56.5 4.1 47 175-226 30-76 (436)
23 CHL00095 clpC Clp protease ATP 96.6 0.0028 6.1E-08 61.2 5.2 47 175-223 179-225 (821)
24 PRK09376 rho transcription ter 96.6 0.002 4.4E-08 56.5 3.4 29 199-227 170-199 (416)
25 PHA02544 44 clamp loader, smal 96.6 0.0038 8.2E-08 53.3 5.1 51 172-223 18-68 (316)
26 PRK13341 recombination factor 96.6 0.003 6.4E-08 60.0 4.8 51 174-226 27-80 (725)
27 COG0466 Lon ATP-dependent Lon 96.6 0.0035 7.6E-08 58.4 5.0 54 173-226 321-378 (782)
28 PRK12402 replication factor C 96.6 0.0039 8.5E-08 53.5 5.2 47 174-222 14-60 (337)
29 cd02019 NK Nucleoside/nucleoti 96.5 0.0028 6.2E-08 41.6 3.0 23 200-222 1-23 (69)
30 TIGR03345 VI_ClpV1 type VI sec 96.5 0.0044 9.6E-08 60.0 5.3 49 173-223 185-233 (852)
31 PRK15455 PrkA family serine pr 96.4 0.0047 1E-07 56.7 4.9 49 175-223 76-128 (644)
32 PRK00440 rfc replication facto 96.4 0.0054 1.2E-07 52.1 5.1 47 174-222 16-62 (319)
33 PTZ00112 origin recognition co 96.4 0.0057 1.2E-07 58.7 5.4 51 173-223 753-806 (1164)
34 TIGR03015 pepcterm_ATPase puta 96.4 0.0039 8.5E-08 51.8 3.9 26 198-223 43-68 (269)
35 PLN03025 replication factor C 96.3 0.0058 1.3E-07 52.4 4.9 48 173-222 11-58 (319)
36 PRK10865 protein disaggregatio 96.3 0.0062 1.3E-07 59.1 5.4 47 174-222 177-223 (857)
37 TIGR03420 DnaA_homol_Hda DnaA 96.3 0.007 1.5E-07 48.9 4.9 41 180-222 22-62 (226)
38 PTZ00361 26 proteosome regulat 96.3 0.0058 1.3E-07 54.7 4.8 51 175-225 183-244 (438)
39 TIGR02903 spore_lon_C ATP-depe 96.2 0.0064 1.4E-07 56.8 4.9 49 172-222 151-199 (615)
40 PRK08903 DnaA regulatory inact 96.2 0.0087 1.9E-07 48.6 5.1 38 184-222 29-66 (227)
41 PRK09270 nucleoside triphospha 96.2 0.01 2.2E-07 48.4 5.5 29 195-223 30-58 (229)
42 PRK14961 DNA polymerase III su 96.2 0.0092 2E-07 52.2 5.5 48 174-222 15-62 (363)
43 TIGR02639 ClpA ATP-dependent C 96.2 0.0071 1.5E-07 57.7 5.0 46 175-222 182-227 (731)
44 TIGR00150 HI0065_YjeE ATPase, 96.2 0.0088 1.9E-07 44.7 4.5 40 183-222 7-46 (133)
45 TIGR03346 chaperone_ClpB ATP-d 96.2 0.0089 1.9E-07 58.0 5.6 46 175-222 173-218 (852)
46 KOG2004 Mitochondrial ATP-depe 96.1 0.0072 1.6E-07 56.4 4.6 53 174-226 410-466 (906)
47 PRK11331 5-methylcytosine-spec 96.1 0.0076 1.6E-07 53.9 4.6 45 175-223 175-219 (459)
48 PRK07003 DNA polymerase III su 96.0 0.0093 2E-07 56.5 4.9 48 174-222 15-62 (830)
49 PRK05896 DNA polymerase III su 96.0 0.011 2.4E-07 54.7 5.2 49 173-222 14-62 (605)
50 PRK14960 DNA polymerase III su 95.9 0.013 2.9E-07 54.7 5.4 48 174-222 14-61 (702)
51 PTZ00454 26S protease regulato 95.9 0.011 2.5E-07 52.3 4.8 52 174-225 144-206 (398)
52 PRK11034 clpA ATP-dependent Cl 95.9 0.014 2.9E-07 55.9 5.5 46 175-222 186-231 (758)
53 PF05673 DUF815: Protein of un 95.9 0.011 2.4E-07 48.6 4.3 53 172-224 24-78 (249)
54 PRK06893 DNA replication initi 95.9 0.016 3.4E-07 47.3 5.1 25 198-222 39-63 (229)
55 PLN02796 D-glycerate 3-kinase 95.8 0.024 5.2E-07 49.0 6.2 27 197-223 99-125 (347)
56 PRK14962 DNA polymerase III su 95.8 0.016 3.5E-07 52.5 5.2 48 174-222 13-60 (472)
57 PRK14956 DNA polymerase III su 95.8 0.014 3.1E-07 52.6 4.8 48 174-222 17-64 (484)
58 PRK14963 DNA polymerase III su 95.7 0.015 3.3E-07 53.0 4.9 48 174-222 13-60 (504)
59 COG1124 DppF ABC-type dipeptid 95.7 0.0086 1.9E-07 49.0 2.9 24 197-220 32-55 (252)
60 PRK09435 membrane ATPase/prote 95.7 0.021 4.4E-07 49.4 5.2 38 186-223 44-81 (332)
61 PRK05439 pantothenate kinase; 95.7 0.025 5.4E-07 48.4 5.7 27 196-222 84-110 (311)
62 TIGR00602 rad24 checkpoint pro 95.7 0.013 2.8E-07 54.8 4.2 53 170-222 79-134 (637)
63 CHL00181 cbbX CbbX; Provisiona 95.7 0.021 4.6E-07 48.3 5.2 22 200-221 61-82 (287)
64 TIGR01243 CDC48 AAA family ATP 95.6 0.015 3.3E-07 55.6 4.6 50 175-224 178-238 (733)
65 PRK14957 DNA polymerase III su 95.6 0.019 4.2E-07 52.8 5.1 48 174-222 15-62 (546)
66 PRK14958 DNA polymerase III su 95.6 0.019 4.1E-07 52.5 5.0 48 174-222 15-62 (509)
67 COG1222 RPT1 ATP-dependent 26S 95.6 0.013 2.9E-07 50.5 3.7 51 176-226 152-213 (406)
68 KOG2028 ATPase related to the 95.6 0.014 3E-07 50.8 3.8 27 197-223 161-187 (554)
69 TIGR00763 lon ATP-dependent pr 95.6 0.019 4.2E-07 55.2 5.2 51 175-225 320-374 (775)
70 PRK14955 DNA polymerase III su 95.6 0.023 5E-07 50.3 5.3 49 173-222 14-62 (397)
71 TIGR02880 cbbX_cfxQ probable R 95.6 0.024 5.1E-07 47.9 5.1 23 200-222 60-82 (284)
72 PLN02318 phosphoribulokinase/u 95.5 0.02 4.3E-07 53.0 4.8 32 191-222 58-89 (656)
73 PLN00020 ribulose bisphosphate 95.5 0.014 3E-07 51.0 3.5 30 196-225 146-175 (413)
74 TIGR00064 ftsY signal recognit 95.5 0.031 6.6E-07 47.0 5.4 26 197-222 71-96 (272)
75 TIGR00750 lao LAO/AO transport 95.5 0.028 6.1E-07 47.8 5.3 35 187-221 23-57 (300)
76 TIGR00767 rho transcription te 95.4 0.015 3.2E-07 51.3 3.6 30 198-227 168-198 (415)
77 PRK05537 bifunctional sulfate 95.4 0.03 6.6E-07 51.9 5.6 38 186-223 380-417 (568)
78 PRK06645 DNA polymerase III su 95.4 0.026 5.6E-07 51.5 5.0 49 173-222 19-67 (507)
79 PF14532 Sigma54_activ_2: Sigm 95.4 0.0087 1.9E-07 44.8 1.7 44 178-221 1-44 (138)
80 TIGR02881 spore_V_K stage V sp 95.4 0.016 3.4E-07 48.3 3.3 25 198-222 42-66 (261)
81 TIGR03689 pup_AAA proteasome A 95.3 0.023 4.9E-07 51.9 4.5 50 175-224 182-242 (512)
82 TIGR00554 panK_bact pantothena 95.3 0.021 4.5E-07 48.4 4.0 26 196-221 60-85 (290)
83 COG1474 CDC6 Cdc6-related prot 95.3 0.039 8.5E-07 48.3 5.8 50 174-224 16-68 (366)
84 TIGR00390 hslU ATP-dependent p 95.3 0.023 5.1E-07 50.4 4.4 51 175-225 12-74 (441)
85 PRK05201 hslU ATP-dependent pr 95.3 0.031 6.6E-07 49.7 5.0 52 174-225 14-77 (443)
86 TIGR01241 FtsH_fam ATP-depende 95.3 0.024 5.2E-07 51.7 4.6 52 173-224 53-114 (495)
87 COG0542 clpA ATP-binding subun 95.3 0.027 5.9E-07 53.5 4.9 47 175-223 170-216 (786)
88 PRK05342 clpX ATP-dependent pr 95.3 0.032 7E-07 49.7 5.2 52 175-226 71-136 (412)
89 PRK13531 regulatory ATPase Rav 95.3 0.028 6.1E-07 50.8 4.8 45 174-222 19-63 (498)
90 PRK08154 anaerobic benzoate ca 95.2 0.025 5.5E-07 48.4 4.3 27 197-223 132-158 (309)
91 COG4608 AppF ABC-type oligopep 95.2 0.016 3.4E-07 48.2 2.8 24 197-220 38-61 (268)
92 PRK14954 DNA polymerase III su 95.2 0.033 7.3E-07 52.0 5.2 49 173-222 14-62 (620)
93 PRK08691 DNA polymerase III su 95.2 0.028 6.1E-07 52.9 4.7 48 174-222 15-62 (709)
94 PF03193 DUF258: Protein of un 95.2 0.033 7.1E-07 43.0 4.3 35 182-221 24-58 (161)
95 PRK14949 DNA polymerase III su 95.1 0.031 6.6E-07 54.0 4.9 48 174-222 15-62 (944)
96 PRK12323 DNA polymerase III su 95.1 0.035 7.6E-07 51.9 5.1 48 174-222 15-62 (700)
97 CHL00176 ftsH cell division pr 95.1 0.021 4.5E-07 53.6 3.7 51 174-224 182-242 (638)
98 PRK08727 hypothetical protein; 95.1 0.049 1.1E-06 44.6 5.5 26 198-223 41-66 (233)
99 PLN02348 phosphoribulokinase 95.1 0.04 8.6E-07 48.5 5.1 28 196-223 47-74 (395)
100 PRK10463 hydrogenase nickel in 95.1 0.042 9.1E-07 46.5 5.0 29 196-224 102-130 (290)
101 COG1224 TIP49 DNA helicase TIP 95.1 0.066 1.4E-06 46.4 6.2 52 173-224 37-91 (450)
102 PRK10787 DNA-binding ATP-depen 95.0 0.032 7E-07 53.6 4.8 52 174-225 321-376 (784)
103 PRK14964 DNA polymerase III su 95.0 0.038 8.3E-07 50.2 5.0 47 174-221 12-58 (491)
104 PF06068 TIP49: TIP49 C-termin 95.0 0.044 9.6E-07 47.8 5.1 53 173-225 22-77 (398)
105 PRK08084 DNA replication initi 95.0 0.027 5.9E-07 46.2 3.7 26 198-223 45-70 (235)
106 PRK08099 bifunctional DNA-bind 95.0 0.022 4.8E-07 50.5 3.3 27 196-222 217-243 (399)
107 cd00820 PEPCK_HprK Phosphoenol 95.0 0.025 5.5E-07 40.6 3.0 23 197-219 14-36 (107)
108 COG1703 ArgK Putative periplas 95.0 0.041 8.8E-07 46.5 4.6 37 185-221 38-74 (323)
109 TIGR02397 dnaX_nterm DNA polym 95.0 0.052 1.1E-06 46.9 5.6 48 174-222 13-60 (355)
110 PRK09111 DNA polymerase III su 94.9 0.039 8.5E-07 51.4 4.9 49 173-222 22-70 (598)
111 PRK07994 DNA polymerase III su 94.9 0.043 9.3E-07 51.5 5.1 48 174-222 15-62 (647)
112 TIGR02639 ClpA ATP-dependent C 94.9 0.048 1E-06 52.1 5.6 50 174-223 453-509 (731)
113 KOG0733 Nuclear AAA ATPase (VC 94.8 0.03 6.5E-07 51.6 3.8 53 174-226 189-251 (802)
114 PRK14951 DNA polymerase III su 94.8 0.047 1E-06 51.0 5.2 48 174-222 15-62 (618)
115 PLN02200 adenylate kinase fami 94.8 0.034 7.4E-07 45.6 3.9 26 197-222 42-67 (234)
116 TIGR01425 SRP54_euk signal rec 94.8 0.057 1.2E-06 48.2 5.4 26 197-222 99-124 (429)
117 KOG0744 AAA+-type ATPase [Post 94.8 0.028 6E-07 48.1 3.2 26 198-223 177-202 (423)
118 PRK11034 clpA ATP-dependent Cl 94.8 0.053 1.2E-06 51.9 5.5 51 174-224 457-514 (758)
119 TIGR01817 nifA Nif-specific re 94.8 0.037 8.1E-07 50.9 4.3 48 174-221 195-242 (534)
120 PRK06620 hypothetical protein; 94.7 0.023 5E-07 46.0 2.5 23 199-221 45-67 (214)
121 PRK10416 signal recognition pa 94.7 0.04 8.6E-07 47.4 4.1 26 197-222 113-138 (318)
122 PRK14974 cell division protein 94.7 0.035 7.6E-07 48.1 3.7 27 197-223 139-165 (336)
123 TIGR03499 FlhF flagellar biosy 94.7 0.037 8.1E-07 46.7 3.8 26 197-222 193-218 (282)
124 PRK14969 DNA polymerase III su 94.6 0.054 1.2E-06 49.8 5.0 48 174-222 15-62 (527)
125 PRK09087 hypothetical protein; 94.6 0.028 6.1E-07 45.9 2.9 25 197-221 43-67 (226)
126 KOG0727 26S proteasome regulat 94.6 0.045 9.9E-07 45.3 4.0 48 176-223 156-214 (408)
127 PRK14952 DNA polymerase III su 94.6 0.058 1.3E-06 50.1 5.2 48 174-222 12-59 (584)
128 TIGR00382 clpX endopeptidase C 94.6 0.032 7E-07 49.6 3.3 52 174-225 76-143 (413)
129 PRK00771 signal recognition pa 94.6 0.067 1.4E-06 48.0 5.4 27 197-223 94-120 (437)
130 PRK11889 flhF flagellar biosyn 94.6 0.037 7.9E-07 48.9 3.6 25 198-222 241-265 (436)
131 TIGR02902 spore_lonB ATP-depen 94.6 0.05 1.1E-06 50.1 4.6 46 174-221 64-109 (531)
132 PF06309 Torsin: Torsin; Inte 94.5 0.097 2.1E-06 38.7 5.2 47 175-221 25-76 (127)
133 PF00308 Bac_DnaA: Bacterial d 94.5 0.066 1.4E-06 43.4 4.8 27 197-223 33-59 (219)
134 PRK07952 DNA replication prote 94.5 0.069 1.5E-06 44.1 4.9 26 198-223 99-124 (244)
135 PRK14970 DNA polymerase III su 94.5 0.075 1.6E-06 46.4 5.4 48 174-222 16-63 (367)
136 PRK09112 DNA polymerase III su 94.5 0.083 1.8E-06 46.1 5.6 51 171-222 19-69 (351)
137 CHL00081 chlI Mg-protoporyphyr 94.4 0.047 1E-06 47.5 3.9 45 175-221 17-61 (350)
138 PRK07764 DNA polymerase III su 94.4 0.064 1.4E-06 51.8 5.1 48 174-222 14-61 (824)
139 PRK10584 putative ABC transpor 94.4 0.038 8.2E-07 44.8 3.1 25 197-221 35-59 (228)
140 TIGR00362 DnaA chromosomal rep 94.4 0.066 1.4E-06 47.5 4.9 26 198-223 136-161 (405)
141 TIGR01243 CDC48 AAA family ATP 94.4 0.06 1.3E-06 51.5 4.8 51 175-225 453-514 (733)
142 cd01133 F1-ATPase_beta F1 ATP 94.4 0.042 9.2E-07 46.1 3.4 28 199-226 70-97 (274)
143 COG1123 ATPase components of v 94.4 0.034 7.4E-07 50.7 3.0 24 197-220 316-339 (539)
144 PHA02244 ATPase-like protein 94.3 0.051 1.1E-06 47.5 3.9 25 200-224 121-145 (383)
145 PRK14950 DNA polymerase III su 94.3 0.076 1.6E-06 49.5 5.3 48 174-222 15-62 (585)
146 PRK12377 putative replication 94.3 0.056 1.2E-06 44.8 4.0 26 198-223 101-126 (248)
147 PRK10536 hypothetical protein; 94.3 0.088 1.9E-06 43.8 5.1 43 175-221 55-97 (262)
148 PRK10865 protein disaggregatio 94.3 0.069 1.5E-06 51.9 5.2 49 174-222 567-622 (857)
149 PRK07471 DNA polymerase III su 94.3 0.095 2.1E-06 45.9 5.5 50 172-222 16-65 (365)
150 TIGR00764 lon_rel lon-related 94.3 0.057 1.2E-06 50.5 4.3 47 174-224 17-63 (608)
151 PRK05642 DNA replication initi 94.3 0.049 1.1E-06 44.6 3.5 25 198-222 45-69 (234)
152 PRK05563 DNA polymerase III su 94.2 0.087 1.9E-06 48.8 5.5 48 174-222 15-62 (559)
153 COG0714 MoxR-like ATPases [Gen 94.2 0.066 1.4E-06 46.1 4.4 47 175-225 24-70 (329)
154 PRK11629 lolD lipoprotein tran 94.2 0.043 9.4E-07 44.7 3.1 25 197-221 34-58 (233)
155 cd03258 ABC_MetN_methionine_tr 94.2 0.044 9.6E-07 44.6 3.1 25 197-221 30-54 (233)
156 PLN03046 D-glycerate 3-kinase; 94.2 0.05 1.1E-06 48.4 3.5 26 197-222 211-236 (460)
157 PRK05022 anaerobic nitric oxid 94.2 0.062 1.3E-06 49.2 4.3 48 174-221 186-233 (509)
158 COG2607 Predicted ATPase (AAA+ 94.1 0.08 1.7E-06 43.5 4.4 53 172-224 57-111 (287)
159 cd01858 NGP_1 NGP-1. Autoanti 94.1 0.067 1.5E-06 40.7 3.8 43 179-221 82-125 (157)
160 PRK10247 putative ABC transpor 94.1 0.047 1E-06 44.3 3.1 25 197-221 32-56 (225)
161 PLN02165 adenylate isopentenyl 94.1 0.05 1.1E-06 46.9 3.3 25 198-222 43-67 (334)
162 TIGR02211 LolD_lipo_ex lipopro 94.1 0.048 1E-06 43.9 3.1 25 197-221 30-54 (221)
163 PRK14953 DNA polymerase III su 94.1 0.09 1.9E-06 47.9 5.1 48 174-222 15-62 (486)
164 PRK14489 putative bifunctional 94.1 0.08 1.7E-06 46.4 4.7 28 197-224 204-231 (366)
165 PRK08116 hypothetical protein; 94.1 0.053 1.1E-06 45.4 3.4 25 199-223 115-139 (268)
166 cd03257 ABC_NikE_OppD_transpor 94.0 0.048 1E-06 44.1 3.0 25 197-221 30-54 (228)
167 COG1223 Predicted ATPase (AAA+ 94.0 0.065 1.4E-06 44.6 3.6 51 174-224 120-177 (368)
168 PRK10619 histidine/lysine/argi 94.0 0.05 1.1E-06 45.1 3.1 25 197-221 30-54 (257)
169 COG4107 PhnK ABC-type phosphon 94.0 0.042 9E-07 43.1 2.4 26 197-222 31-56 (258)
170 TIGR03238 dnd_assoc_3 dnd syst 94.0 0.046 9.9E-07 49.3 2.9 22 196-217 30-51 (504)
171 PRK09183 transposase/IS protei 93.9 0.053 1.2E-06 45.2 3.2 23 199-221 103-125 (259)
172 COG4240 Predicted kinase [Gene 93.9 0.059 1.3E-06 44.0 3.2 28 197-224 49-76 (300)
173 PRK05703 flhF flagellar biosyn 93.9 0.1 2.2E-06 46.7 5.0 25 198-222 221-245 (424)
174 PRK11300 livG leucine/isoleuci 93.9 0.055 1.2E-06 44.7 3.1 25 197-221 30-54 (255)
175 PRK04220 2-phosphoglycerate ki 93.9 0.064 1.4E-06 45.6 3.5 26 198-223 92-117 (301)
176 PRK11022 dppD dipeptide transp 93.9 0.051 1.1E-06 46.8 3.0 26 197-222 32-57 (326)
177 PRK06526 transposase; Provisio 93.8 0.059 1.3E-06 44.8 3.2 23 199-221 99-121 (254)
178 PRK00149 dnaA chromosomal repl 93.8 0.099 2.1E-06 47.1 4.9 27 198-224 148-174 (450)
179 PRK14948 DNA polymerase III su 93.8 0.11 2.3E-06 48.8 5.2 48 174-222 15-62 (620)
180 TIGR02324 CP_lyasePhnL phospho 93.8 0.058 1.3E-06 43.6 3.1 25 197-221 33-57 (224)
181 TIGR01650 PD_CobS cobaltochela 93.8 0.14 3E-06 44.1 5.4 45 176-224 46-90 (327)
182 PRK14242 phosphate transporter 93.8 0.06 1.3E-06 44.4 3.1 25 197-221 31-55 (253)
183 PRK10867 signal recognition pa 93.7 0.12 2.5E-06 46.4 5.1 26 197-222 99-124 (433)
184 cd03266 ABC_NatA_sodium_export 93.7 0.061 1.3E-06 43.2 3.1 24 198-221 31-54 (218)
185 cd03232 ABC_PDR_domain2 The pl 93.7 0.062 1.4E-06 42.5 3.1 24 197-220 32-55 (192)
186 PRK10575 iron-hydroxamate tran 93.7 0.054 1.2E-06 45.1 2.8 25 197-221 36-60 (265)
187 KOG1969 DNA replication checkp 93.7 0.064 1.4E-06 50.4 3.4 26 196-221 324-349 (877)
188 PRK15093 antimicrobial peptide 93.7 0.059 1.3E-06 46.5 3.1 25 197-221 32-56 (330)
189 PRK11247 ssuB aliphatic sulfon 93.7 0.062 1.3E-06 44.7 3.1 25 197-221 37-61 (257)
190 cd03223 ABCD_peroxisomal_ALDP 93.7 0.066 1.4E-06 41.3 3.1 25 197-221 26-50 (166)
191 COG0444 DppD ABC-type dipeptid 93.7 0.064 1.4E-06 45.7 3.2 25 197-221 30-54 (316)
192 TIGR03596 GTPase_YlqF ribosome 93.7 2.4 5.3E-05 35.5 12.8 24 198-221 118-141 (276)
193 cd03267 ABC_NatA_like Similar 93.7 0.063 1.4E-06 43.9 3.1 25 197-221 46-70 (236)
194 PLN02199 shikimate kinase 93.7 0.067 1.4E-06 45.4 3.2 26 198-223 102-127 (303)
195 PRK06647 DNA polymerase III su 93.6 0.11 2.5E-06 48.1 5.0 48 174-222 15-62 (563)
196 PRK15429 formate hydrogenlyase 93.6 0.073 1.6E-06 50.5 3.9 47 175-221 376-422 (686)
197 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.6 0.068 1.5E-06 40.3 3.0 25 197-221 25-49 (144)
198 PRK14238 phosphate transporter 93.6 0.066 1.4E-06 44.8 3.2 26 197-222 49-74 (271)
199 PRK14248 phosphate ABC transpo 93.6 0.067 1.4E-06 44.6 3.2 24 197-220 46-69 (268)
200 PRK06305 DNA polymerase III su 93.6 0.14 3E-06 46.3 5.3 48 174-222 16-63 (451)
201 cd03216 ABC_Carb_Monos_I This 93.6 0.072 1.6E-06 41.0 3.1 25 197-221 25-49 (163)
202 PRK14274 phosphate ABC transpo 93.6 0.068 1.5E-06 44.3 3.1 26 197-222 37-62 (259)
203 PRK14722 flhF flagellar biosyn 93.5 0.072 1.6E-06 46.8 3.4 24 198-221 137-160 (374)
204 PRK11701 phnK phosphonate C-P 93.5 0.068 1.5E-06 44.3 3.1 25 197-221 31-55 (258)
205 PRK09473 oppD oligopeptide tra 93.5 0.063 1.4E-06 46.4 2.9 25 197-221 41-65 (330)
206 PRK11308 dppF dipeptide transp 93.5 0.068 1.5E-06 46.1 3.1 25 197-221 40-64 (327)
207 PRK14243 phosphate transporter 93.5 0.07 1.5E-06 44.4 3.1 24 197-220 35-58 (264)
208 PF03215 Rad17: Rad17 cell cyc 93.5 0.11 2.4E-06 47.6 4.6 47 176-222 20-69 (519)
209 PRK13645 cbiO cobalt transport 93.5 0.068 1.5E-06 45.1 3.1 25 197-221 36-60 (289)
210 PRK10744 pstB phosphate transp 93.5 0.07 1.5E-06 44.3 3.1 25 197-221 38-62 (260)
211 cd01855 YqeH YqeH. YqeH is an 93.5 0.088 1.9E-06 41.4 3.5 40 178-221 111-150 (190)
212 PRK14239 phosphate transporter 93.5 0.069 1.5E-06 44.0 3.1 24 197-220 30-53 (252)
213 CHL00131 ycf16 sulfate ABC tra 93.5 0.067 1.5E-06 44.0 3.0 24 197-220 32-55 (252)
214 PRK13649 cbiO cobalt transport 93.4 0.068 1.5E-06 44.9 3.0 25 197-221 32-56 (280)
215 cd03294 ABC_Pro_Gly_Bertaine T 93.4 0.071 1.5E-06 44.5 3.1 25 197-221 49-73 (269)
216 KOG0651 26S proteasome regulat 93.4 0.076 1.6E-06 45.2 3.1 30 197-226 165-194 (388)
217 TIGR00991 3a0901s02IAP34 GTP-b 93.4 0.099 2.1E-06 44.7 3.9 30 192-221 32-61 (313)
218 KOG0738 AAA+-type ATPase [Post 93.4 0.11 2.4E-06 45.6 4.1 49 175-223 212-270 (491)
219 PRK11831 putative ABC transpor 93.4 0.071 1.5E-06 44.5 3.0 25 197-221 32-56 (269)
220 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.4 0.073 1.6E-06 43.2 3.0 25 197-221 47-71 (224)
221 cd03228 ABCC_MRP_Like The MRP 93.4 0.081 1.8E-06 41.0 3.1 25 197-221 27-51 (171)
222 cd03233 ABC_PDR_domain1 The pl 93.4 0.073 1.6E-06 42.5 2.9 25 197-221 32-56 (202)
223 PRK15056 manganese/iron transp 93.3 0.073 1.6E-06 44.5 3.0 25 197-221 32-56 (272)
224 PRK14259 phosphate ABC transpo 93.3 0.075 1.6E-06 44.4 3.1 25 197-221 38-62 (269)
225 cd01878 HflX HflX subfamily. 93.3 0.073 1.6E-06 42.2 2.9 26 196-221 39-64 (204)
226 PRK14260 phosphate ABC transpo 93.3 0.081 1.8E-06 43.9 3.2 25 197-221 32-56 (259)
227 PRK14237 phosphate transporter 93.3 0.082 1.8E-06 44.1 3.2 26 197-222 45-70 (267)
228 PRK14255 phosphate ABC transpo 93.3 0.079 1.7E-06 43.7 3.1 24 197-220 30-53 (252)
229 PRK07133 DNA polymerase III su 93.2 0.14 3E-06 48.7 4.9 48 174-222 17-64 (725)
230 PRK14261 phosphate ABC transpo 93.2 0.079 1.7E-06 43.7 3.1 24 197-220 31-54 (253)
231 PF02367 UPF0079: Uncharacteri 93.2 0.13 2.9E-06 37.8 3.9 26 197-222 14-39 (123)
232 PF13245 AAA_19: Part of AAA d 93.2 0.1 2.2E-06 34.9 3.0 23 199-221 11-34 (76)
233 PRK14273 phosphate ABC transpo 93.2 0.081 1.8E-06 43.7 3.1 25 197-221 32-56 (254)
234 PRK10820 DNA-binding transcrip 93.2 0.095 2.1E-06 48.1 3.8 47 175-221 204-250 (520)
235 cd03234 ABCG_White The White s 93.2 0.088 1.9E-06 42.7 3.2 25 197-221 32-56 (226)
236 PRK13543 cytochrome c biogenes 93.2 0.084 1.8E-06 42.5 3.1 25 197-221 36-60 (214)
237 PRK14235 phosphate transporter 93.2 0.087 1.9E-06 43.9 3.3 26 197-222 44-69 (267)
238 cd03248 ABCC_TAP TAP, the Tran 93.2 0.085 1.8E-06 42.7 3.1 25 197-221 39-63 (226)
239 PRK13632 cbiO cobalt transport 93.2 0.081 1.8E-06 44.2 3.1 25 197-221 34-58 (271)
240 PRK06921 hypothetical protein; 93.2 0.092 2E-06 44.0 3.3 26 198-223 117-142 (266)
241 cd03369 ABCC_NFT1 Domain 2 of 93.1 0.089 1.9E-06 42.0 3.1 25 197-221 33-57 (207)
242 PRK10646 ADP-binding protein; 93.1 0.18 3.9E-06 38.6 4.6 41 182-222 12-52 (153)
243 cd01853 Toc34_like Toc34-like 93.1 0.12 2.6E-06 42.8 3.9 31 191-221 24-54 (249)
244 PRK13640 cbiO cobalt transport 93.1 0.088 1.9E-06 44.3 3.1 25 197-221 32-56 (282)
245 PRK14265 phosphate ABC transpo 93.1 0.088 1.9E-06 44.1 3.1 24 197-220 45-68 (274)
246 TIGR03346 chaperone_ClpB ATP-d 93.0 0.15 3.1E-06 49.8 4.9 49 174-222 564-619 (852)
247 TIGR01526 nadR_NMN_Atrans nico 93.0 0.097 2.1E-06 45.1 3.4 25 198-222 162-186 (325)
248 PRK14244 phosphate ABC transpo 93.0 0.092 2E-06 43.3 3.1 24 198-221 31-54 (251)
249 PRK15079 oligopeptide ABC tran 93.0 0.088 1.9E-06 45.5 3.1 25 197-221 46-70 (331)
250 PRK11388 DNA-binding transcrip 93.0 0.1 2.3E-06 49.0 3.8 47 175-221 325-371 (638)
251 TIGR02329 propionate_PrpR prop 93.0 0.11 2.5E-06 47.7 3.9 47 175-221 212-258 (526)
252 PRK06995 flhF flagellar biosyn 93.0 0.1 2.2E-06 47.4 3.5 25 198-222 256-280 (484)
253 PRK11614 livF leucine/isoleuci 92.9 0.091 2E-06 42.9 3.0 24 197-220 30-53 (237)
254 PRK15424 propionate catabolism 92.9 0.12 2.6E-06 47.6 4.0 47 175-221 219-265 (538)
255 PRK12724 flagellar biosynthesi 92.9 0.11 2.4E-06 46.2 3.6 24 198-221 223-246 (432)
256 PRK11153 metN DL-methionine tr 92.9 0.093 2E-06 45.6 3.1 25 197-221 30-54 (343)
257 TIGR02314 ABC_MetN D-methionin 92.9 0.094 2E-06 45.6 3.1 25 197-221 30-54 (343)
258 PRK14271 phosphate ABC transpo 92.9 0.098 2.1E-06 43.9 3.1 25 197-221 46-70 (276)
259 PRK13546 teichoic acids export 92.8 0.096 2.1E-06 43.7 3.0 25 197-221 49-73 (264)
260 KOG0991 Replication factor C, 92.8 0.12 2.7E-06 42.4 3.5 48 173-222 25-72 (333)
261 PRK13650 cbiO cobalt transport 92.8 0.1 2.2E-06 43.9 3.1 25 197-221 32-56 (279)
262 COG1136 SalX ABC-type antimicr 92.8 0.11 2.3E-06 42.4 3.1 23 197-219 30-52 (226)
263 PRK13648 cbiO cobalt transport 92.8 0.1 2.2E-06 43.6 3.1 25 197-221 34-58 (269)
264 PRK12422 chromosomal replicati 92.8 0.11 2.3E-06 46.8 3.4 26 198-223 141-166 (445)
265 PRK14236 phosphate transporter 92.8 0.1 2.2E-06 43.6 3.1 25 197-221 50-74 (272)
266 PF01695 IstB_IS21: IstB-like 92.7 0.13 2.7E-06 40.4 3.4 23 199-221 48-70 (178)
267 TIGR02769 nickel_nikE nickel i 92.7 0.1 2.2E-06 43.4 3.1 25 197-221 36-60 (265)
268 CHL00095 clpC Clp protease ATP 92.7 0.23 5E-06 48.2 5.8 49 174-222 508-563 (821)
269 PRK08451 DNA polymerase III su 92.7 0.21 4.6E-06 45.9 5.2 48 174-222 13-60 (535)
270 COG0542 clpA ATP-binding subun 92.7 0.18 3.8E-06 48.2 4.8 72 152-223 463-546 (786)
271 cd01121 Sms Sms (bacterial rad 92.7 0.2 4.3E-06 44.0 4.9 39 184-222 68-106 (372)
272 PRK13647 cbiO cobalt transport 92.7 0.1 2.2E-06 43.7 3.0 25 197-221 30-54 (274)
273 PRK10253 iron-enterobactin tra 92.7 0.098 2.1E-06 43.5 2.8 25 197-221 32-56 (265)
274 cd03291 ABCC_CFTR1 The CFTR su 92.6 0.11 2.4E-06 43.9 3.1 25 197-221 62-86 (282)
275 PRK14965 DNA polymerase III su 92.6 0.21 4.5E-06 46.5 5.2 48 174-222 15-62 (576)
276 PRK12337 2-phosphoglycerate ki 92.6 0.12 2.7E-06 46.4 3.5 26 197-222 254-279 (475)
277 cd00267 ABC_ATPase ABC (ATP-bi 92.6 0.12 2.6E-06 39.3 3.1 24 198-221 25-48 (157)
278 PRK13477 bifunctional pantoate 92.6 0.12 2.5E-06 47.3 3.4 25 198-222 284-308 (512)
279 PRK14258 phosphate ABC transpo 92.6 0.11 2.4E-06 43.1 3.1 25 197-221 32-56 (261)
280 PRK14275 phosphate ABC transpo 92.6 0.11 2.4E-06 43.8 3.1 25 197-221 64-88 (286)
281 PRK14721 flhF flagellar biosyn 92.6 0.12 2.6E-06 46.1 3.4 25 197-221 190-214 (420)
282 KOG0733 Nuclear AAA ATPase (VC 92.6 0.096 2.1E-06 48.4 2.8 27 200-226 547-573 (802)
283 PRK10923 glnG nitrogen regulat 92.6 0.15 3.3E-06 45.9 4.2 47 175-221 138-184 (469)
284 PRK10419 nikE nickel transport 92.6 0.11 2.4E-06 43.4 3.0 25 197-221 37-61 (268)
285 PRK14252 phosphate ABC transpo 92.6 0.11 2.5E-06 43.1 3.1 25 197-221 41-65 (265)
286 PRK15112 antimicrobial peptide 92.6 0.11 2.5E-06 43.2 3.1 25 197-221 38-62 (267)
287 TIGR03345 VI_ClpV1 type VI sec 92.5 0.24 5.2E-06 48.3 5.6 49 174-222 565-620 (852)
288 PRK12723 flagellar biosynthesi 92.5 0.14 3.1E-06 45.2 3.8 25 198-222 174-198 (388)
289 PRK14268 phosphate ABC transpo 92.5 0.12 2.5E-06 42.9 3.1 25 197-221 37-61 (258)
290 PRK14088 dnaA chromosomal repl 92.5 0.12 2.7E-06 46.4 3.4 26 198-223 130-155 (440)
291 KOG0734 AAA+-type ATPase conta 92.5 0.14 3E-06 46.7 3.7 49 174-222 303-361 (752)
292 PRK13646 cbiO cobalt transport 92.5 0.12 2.5E-06 43.7 3.1 25 197-221 32-56 (286)
293 PF13271 DUF4062: Domain of un 92.5 0.53 1.1E-05 31.9 5.8 65 19-84 2-67 (83)
294 PRK12726 flagellar biosynthesi 92.5 0.16 3.4E-06 44.8 3.9 26 197-222 205-230 (407)
295 PRK12727 flagellar biosynthesi 92.5 0.12 2.7E-06 47.3 3.4 24 198-221 350-373 (559)
296 TIGR02782 TrbB_P P-type conjug 92.5 0.12 2.7E-06 43.9 3.2 24 200-223 134-157 (299)
297 cd03250 ABCC_MRP_domain1 Domai 92.4 0.12 2.7E-06 41.0 3.1 25 197-221 30-54 (204)
298 PRK06835 DNA replication prote 92.4 0.14 3E-06 44.3 3.4 24 199-222 184-207 (329)
299 KOG0062 ATPase component of AB 92.3 0.094 2E-06 47.4 2.4 24 198-221 106-129 (582)
300 PRK13636 cbiO cobalt transport 92.3 0.13 2.8E-06 43.4 3.1 25 197-221 31-55 (283)
301 TIGR00416 sms DNA repair prote 92.3 0.25 5.5E-06 44.6 5.1 41 182-222 78-118 (454)
302 TIGR00959 ffh signal recogniti 92.3 0.29 6.4E-06 43.8 5.5 25 198-222 99-123 (428)
303 CHL00195 ycf46 Ycf46; Provisio 92.3 0.23 4.9E-06 45.3 4.8 50 175-224 228-285 (489)
304 PRK13651 cobalt transporter AT 92.2 0.13 2.8E-06 43.9 3.1 25 197-221 32-56 (305)
305 PRK13637 cbiO cobalt transport 92.2 0.13 2.9E-06 43.4 3.1 25 197-221 32-56 (287)
306 COG3842 PotA ABC-type spermidi 92.2 0.13 2.8E-06 44.7 3.1 24 197-220 30-53 (352)
307 PRK14254 phosphate ABC transpo 92.2 0.13 2.9E-06 43.3 3.1 25 197-221 64-88 (285)
308 PRK13641 cbiO cobalt transport 92.2 0.13 2.9E-06 43.3 3.1 25 197-221 32-56 (287)
309 KOG0726 26S proteasome regulat 92.2 0.17 3.7E-06 42.9 3.6 49 176-224 186-245 (440)
310 KOG0730 AAA+-type ATPase [Post 92.2 0.23 5E-06 46.2 4.7 52 175-226 434-496 (693)
311 cd01854 YjeQ_engC YjeQ/EngC. 92.1 0.18 4E-06 42.6 3.9 33 184-221 152-184 (287)
312 TIGR02012 tigrfam_recA protein 92.1 0.3 6.6E-06 42.0 5.2 38 184-221 40-78 (321)
313 PRK13643 cbiO cobalt transport 92.1 0.14 3E-06 43.3 3.1 25 197-221 31-55 (288)
314 PRK13631 cbiO cobalt transport 92.1 0.14 3E-06 44.1 3.1 25 197-221 51-75 (320)
315 PRK14264 phosphate ABC transpo 92.1 0.14 3E-06 43.7 3.1 25 197-221 70-94 (305)
316 TIGR02982 heterocyst_DevA ABC 92.1 0.15 3.2E-06 41.1 3.1 24 198-221 31-54 (220)
317 PRK13635 cbiO cobalt transport 92.1 0.14 3.1E-06 43.0 3.1 25 197-221 32-56 (279)
318 PRK10261 glutathione transport 92.1 0.13 2.8E-06 48.3 3.1 25 197-221 41-65 (623)
319 TIGR00157 ribosome small subun 92.0 0.22 4.9E-06 41.1 4.2 33 184-221 111-143 (245)
320 PRK13765 ATP-dependent proteas 91.9 0.23 5E-06 46.7 4.6 47 172-222 28-74 (637)
321 PF00437 T2SE: Type II/IV secr 91.9 0.19 4.2E-06 41.8 3.7 38 185-222 114-151 (270)
322 PRK08181 transposase; Validate 91.9 0.17 3.6E-06 42.5 3.3 24 199-222 107-130 (269)
323 COG1245 Predicted ATPase, RNas 91.9 0.14 3.1E-06 45.9 2.9 26 197-222 366-391 (591)
324 PRK15134 microcin C ABC transp 91.9 0.14 3.1E-06 47.0 3.1 25 197-221 34-58 (529)
325 PTZ00035 Rad51 protein; Provis 91.9 0.25 5.5E-06 42.8 4.5 37 184-220 104-140 (337)
326 cd03213 ABCG_EPDR ABCG transpo 91.9 0.16 3.4E-06 40.3 3.0 25 197-221 34-58 (194)
327 PRK14087 dnaA chromosomal repl 91.8 0.31 6.7E-06 44.0 5.1 26 198-223 141-166 (450)
328 PRK14263 phosphate ABC transpo 91.8 0.16 3.6E-06 42.2 3.1 25 197-221 33-57 (261)
329 KOG0731 AAA+-type ATPase conta 91.7 0.22 4.7E-06 47.4 4.2 49 174-222 310-368 (774)
330 PF13555 AAA_29: P-loop contai 91.7 0.22 4.8E-06 32.0 3.0 20 200-219 25-44 (62)
331 COG2274 SunT ABC-type bacterio 91.7 0.14 3.1E-06 48.7 2.9 25 196-220 497-521 (709)
332 PRK13633 cobalt transporter AT 91.7 0.16 3.5E-06 42.6 3.0 25 197-221 35-59 (280)
333 PRK00098 GTPase RsgA; Reviewed 91.6 0.21 4.5E-06 42.5 3.7 33 184-221 155-187 (298)
334 PRK15439 autoinducer 2 ABC tra 91.6 0.16 3.4E-06 46.5 3.1 25 197-221 36-60 (510)
335 PRK13642 cbiO cobalt transport 91.6 0.17 3.7E-06 42.4 3.1 25 197-221 32-56 (277)
336 COG1072 CoaA Panthothenate kin 91.6 0.43 9.2E-06 40.0 5.3 29 196-224 80-108 (283)
337 TIGR02236 recomb_radA DNA repa 91.6 0.3 6.6E-06 41.6 4.6 37 185-221 82-118 (310)
338 PRK14257 phosphate ABC transpo 91.5 0.16 3.5E-06 43.8 2.9 26 197-222 107-132 (329)
339 cd03288 ABCC_SUR2 The SUR doma 91.5 0.18 3.8E-06 41.8 3.0 25 197-221 46-70 (257)
340 PRK13634 cbiO cobalt transport 91.5 0.18 3.9E-06 42.7 3.1 25 197-221 32-56 (290)
341 COG0464 SpoVK ATPases of the A 91.5 0.16 3.5E-06 46.2 3.0 30 197-226 275-304 (494)
342 PRK14959 DNA polymerase III su 91.4 0.3 6.4E-06 45.7 4.7 48 174-222 15-62 (624)
343 PRK09563 rbgA GTPase YlqF; Rev 91.4 5.9 0.00013 33.4 12.3 24 198-221 121-144 (287)
344 PRK10261 glutathione transport 91.4 0.17 3.6E-06 47.6 3.1 76 36-111 146-228 (623)
345 TIGR02788 VirB11 P-type DNA tr 91.4 0.2 4.3E-06 42.8 3.3 26 197-222 143-168 (308)
346 PRK13549 xylose transporter AT 91.3 0.18 3.9E-06 46.0 3.2 25 197-221 30-54 (506)
347 PRK10070 glycine betaine trans 91.3 0.18 4E-06 44.7 3.1 25 197-221 53-77 (400)
348 TIGR02868 CydC thiol reductant 91.3 0.17 3.6E-06 46.4 3.0 25 197-221 360-384 (529)
349 PRK13549 xylose transporter AT 91.3 0.17 3.6E-06 46.3 2.9 77 35-111 123-202 (506)
350 PRK13409 putative ATPase RIL; 91.3 0.18 3.8E-06 47.2 3.1 75 36-111 193-270 (590)
351 PRK09700 D-allose transporter 91.3 0.16 3.5E-06 46.4 2.8 25 197-221 30-54 (510)
352 PRK13409 putative ATPase RIL; 91.3 0.17 3.7E-06 47.2 3.0 25 197-221 98-122 (590)
353 COG4618 ArpD ABC-type protease 91.3 0.17 3.7E-06 45.8 2.8 24 197-220 361-384 (580)
354 PRK11432 fbpC ferric transport 91.3 0.19 4.2E-06 43.8 3.1 25 197-221 31-55 (351)
355 COG1134 TagH ABC-type polysacc 91.2 0.21 4.5E-06 41.1 3.1 25 197-221 52-76 (249)
356 COG0465 HflB ATP-dependent Zn 91.2 0.15 3.3E-06 47.2 2.6 53 172-224 147-209 (596)
357 PRK10982 galactose/methyl gala 91.2 0.16 3.5E-06 46.2 2.7 77 35-111 114-193 (491)
358 PRK13537 nodulation ABC transp 91.2 0.2 4.3E-06 42.8 3.1 25 197-221 32-56 (306)
359 COG1245 Predicted ATPase, RNas 91.2 0.16 3.5E-06 45.5 2.5 29 197-225 99-127 (591)
360 PRK09700 D-allose transporter 91.2 0.17 3.8E-06 46.2 2.9 78 34-111 124-204 (510)
361 COG1123 ATPase components of v 91.2 0.17 3.8E-06 46.3 2.8 26 196-221 33-58 (539)
362 PRK15134 microcin C ABC transp 91.1 0.18 4E-06 46.3 3.1 79 34-112 132-217 (529)
363 PRK08939 primosomal protein Dn 91.1 0.23 5E-06 42.5 3.4 26 198-223 156-181 (306)
364 PF08298 AAA_PrkA: PrkA AAA do 91.1 0.37 8.1E-06 41.8 4.6 49 175-223 61-113 (358)
365 COG1127 Ttg2A ABC-type transpo 91.0 0.21 4.6E-06 41.0 2.9 29 193-221 29-57 (263)
366 PRK11819 putative ABC transpor 91.0 0.19 4.2E-06 46.5 3.1 25 197-221 32-56 (556)
367 TIGR02238 recomb_DMC1 meiotic 90.9 0.29 6.2E-06 42.0 3.8 36 184-219 82-117 (313)
368 PRK11819 putative ABC transpor 90.9 0.2 4.2E-06 46.4 3.0 25 197-221 349-373 (556)
369 PRK13536 nodulation factor exp 90.9 0.21 4.5E-06 43.4 3.0 25 197-221 66-90 (340)
370 PRK15439 autoinducer 2 ABC tra 90.9 0.18 4E-06 46.1 2.8 78 34-111 119-199 (510)
371 KOG0989 Replication factor C, 90.9 0.39 8.5E-06 40.9 4.4 49 172-222 33-81 (346)
372 TIGR02239 recomb_RAD51 DNA rep 90.9 0.3 6.5E-06 42.0 3.9 38 183-220 81-118 (316)
373 cd00983 recA RecA is a bacter 90.8 0.48 1E-05 40.9 5.1 38 184-221 40-78 (325)
374 COG4916 Uncharacterized protei 90.8 0.28 6E-06 40.4 3.4 82 12-95 173-260 (329)
375 PRK15064 ABC transporter ATP-b 90.8 0.2 4.4E-06 46.0 3.0 25 197-221 344-368 (530)
376 COG1484 DnaC DNA replication p 90.8 0.26 5.6E-06 41.0 3.4 27 197-223 104-130 (254)
377 PRK11823 DNA repair protein Ra 90.8 0.45 9.8E-06 42.9 5.1 40 183-222 65-104 (446)
378 PRK12608 transcription termina 90.8 0.25 5.5E-06 43.3 3.4 25 200-224 135-159 (380)
379 PRK14246 phosphate ABC transpo 90.8 0.22 4.8E-06 41.3 3.0 25 197-221 35-59 (257)
380 cd01857 HSR1_MMR1 HSR1/MMR1. 90.7 0.22 4.9E-06 37.1 2.7 22 200-221 85-106 (141)
381 COG1131 CcmA ABC-type multidru 90.7 0.23 5E-06 42.1 3.1 25 197-221 30-54 (293)
382 COG4167 SapF ABC-type antimicr 90.7 0.22 4.8E-06 39.5 2.7 23 198-220 39-61 (267)
383 TIGR03156 GTP_HflX GTP-binding 90.7 0.078 1.7E-06 46.2 0.2 75 33-109 19-103 (351)
384 TIGR03269 met_CoM_red_A2 methy 90.7 0.22 4.7E-06 45.7 3.1 76 37-112 150-229 (520)
385 PRK09452 potA putrescine/sperm 90.7 0.23 5E-06 43.7 3.1 25 197-221 39-63 (375)
386 PLN02674 adenylate kinase 90.7 0.47 1E-05 39.2 4.7 23 199-221 32-54 (244)
387 PRK09866 hypothetical protein; 90.7 0.3 6.5E-06 45.8 3.9 42 180-221 51-92 (741)
388 COG4172 ABC-type uncharacteriz 90.7 0.19 4.1E-06 44.5 2.5 26 197-222 312-337 (534)
389 PRK10762 D-ribose transporter 90.6 0.21 4.6E-06 45.5 2.9 76 36-111 122-200 (501)
390 PRK04301 radA DNA repair and r 90.6 0.38 8.3E-06 41.2 4.4 37 185-221 89-125 (317)
391 PRK13900 type IV secretion sys 90.6 0.19 4.2E-06 43.5 2.5 25 198-222 160-184 (332)
392 PRK12288 GTPase RsgA; Reviewed 90.6 0.3 6.4E-06 42.6 3.7 33 184-221 196-228 (347)
393 cd01129 PulE-GspE PulE/GspE Th 90.6 0.44 9.6E-06 39.8 4.6 37 183-222 68-104 (264)
394 PRK11607 potG putrescine trans 90.5 0.24 5.2E-06 43.6 3.1 23 198-220 45-67 (377)
395 PLN03073 ABC transporter F fam 90.5 0.2 4.4E-06 47.8 2.8 24 197-220 202-225 (718)
396 PRK00652 lpxK tetraacyldisacch 90.5 0.3 6.5E-06 42.1 3.5 29 196-224 47-77 (325)
397 PRK11147 ABC transporter ATPas 90.5 0.23 4.9E-06 46.8 3.0 25 197-221 344-368 (635)
398 cd02033 BchX Chlorophyllide re 90.5 0.36 7.9E-06 41.7 4.0 25 197-221 30-54 (329)
399 TIGR03719 ABC_ABC_ChvD ATP-bin 90.4 0.21 4.6E-06 46.2 2.8 25 197-221 347-371 (552)
400 COG4598 HisP ABC-type histidin 90.4 0.24 5.1E-06 39.2 2.6 25 195-219 29-53 (256)
401 PRK04841 transcriptional regul 90.3 0.38 8.2E-06 46.8 4.6 47 170-221 9-55 (903)
402 TIGR02524 dot_icm_DotB Dot/Icm 90.3 0.31 6.8E-06 42.6 3.6 25 198-222 134-158 (358)
403 PRK10938 putative molybdenum t 90.2 0.24 5.1E-06 45.0 2.9 78 35-112 115-195 (490)
404 TIGR03719 ABC_ABC_ChvD ATP-bin 90.2 0.25 5.4E-06 45.7 3.1 25 197-221 30-54 (552)
405 PRK10636 putative ABC transpor 90.2 0.25 5.3E-06 46.6 3.0 25 197-221 337-361 (638)
406 PRK11288 araG L-arabinose tran 90.2 0.24 5.2E-06 45.2 2.9 77 35-111 120-199 (501)
407 PRK09354 recA recombinase A; P 90.2 0.59 1.3E-05 40.7 5.1 38 184-221 45-83 (349)
408 TIGR03018 pepcterm_TyrKin exop 90.1 0.47 1E-05 37.9 4.3 26 197-222 34-60 (207)
409 cd01859 MJ1464 MJ1464. This f 90.1 0.56 1.2E-05 35.4 4.5 42 178-220 82-123 (156)
410 cd01849 YlqF_related_GTPase Yl 90.1 0.42 9.2E-06 36.2 3.8 25 197-221 99-123 (155)
411 COG0488 Uup ATPase components 90.1 0.25 5.3E-06 45.5 2.9 25 198-222 348-372 (530)
412 TIGR02633 xylG D-xylose ABC tr 90.1 0.25 5.4E-06 45.0 2.9 77 35-111 120-200 (500)
413 PRK01889 GTPase RsgA; Reviewed 90.1 0.44 9.6E-06 41.6 4.3 35 183-221 184-218 (356)
414 PF05621 TniB: Bacterial TniB 90.1 0.57 1.2E-05 39.8 4.8 48 174-221 33-84 (302)
415 TIGR03878 thermo_KaiC_2 KaiC d 90.0 0.23 4.9E-06 41.4 2.4 25 196-220 34-58 (259)
416 PRK11860 bifunctional 3-phosph 90.0 0.43 9.3E-06 45.2 4.5 26 198-223 442-467 (661)
417 PRK11176 lipid transporter ATP 89.9 0.28 6.1E-06 45.5 3.2 25 197-221 368-392 (582)
418 PLN03187 meiotic recombination 89.9 0.45 9.7E-06 41.4 4.2 36 184-219 112-147 (344)
419 COG1132 MdlB ABC-type multidru 89.9 0.26 5.6E-06 45.6 2.9 24 197-220 354-377 (567)
420 PHA02624 large T antigen; Prov 89.8 0.64 1.4E-05 43.3 5.3 38 186-223 419-456 (647)
421 PRK13851 type IV secretion sys 89.8 0.23 5E-06 43.1 2.4 25 198-222 162-186 (344)
422 PRK11058 GTPase HflX; Provisio 89.8 2.2 4.7E-05 38.3 8.6 75 33-109 27-111 (426)
423 TIGR03258 PhnT 2-aminoethylpho 89.8 0.31 6.7E-06 42.7 3.1 23 198-220 31-53 (362)
424 COG2204 AtoC Response regulato 89.7 0.48 1E-05 42.7 4.3 49 173-221 139-187 (464)
425 PRK03003 GTP-binding protein D 89.7 0.42 9E-06 43.4 4.0 24 197-220 37-60 (472)
426 PRK12289 GTPase RsgA; Reviewed 89.7 0.4 8.7E-06 41.8 3.7 33 184-221 163-195 (352)
427 TIGR03815 CpaE_hom_Actino heli 89.7 0.7 1.5E-05 39.6 5.2 27 196-222 91-118 (322)
428 COG5192 BMS1 GTP-binding prote 89.7 0.33 7.2E-06 44.6 3.2 27 196-222 67-93 (1077)
429 PRK14971 DNA polymerase III su 89.6 0.63 1.4E-05 43.7 5.2 48 174-222 16-63 (614)
430 PRK06851 hypothetical protein; 89.6 0.42 9.1E-06 41.9 3.8 25 198-222 214-238 (367)
431 COG1419 FlhF Flagellar GTP-bin 89.5 0.56 1.2E-05 41.4 4.5 22 197-218 202-223 (407)
432 TIGR03415 ABC_choXWV_ATP choli 89.5 0.31 6.8E-06 43.0 3.0 24 198-221 50-73 (382)
433 PLN03073 ABC transporter F fam 89.5 0.3 6.5E-06 46.7 3.0 24 198-221 535-558 (718)
434 PF08423 Rad51: Rad51; InterP 89.5 0.37 8.1E-06 40.1 3.3 36 185-220 25-60 (256)
435 TIGR01663 PNK-3'Pase polynucle 89.4 0.45 9.7E-06 43.7 3.9 26 196-221 367-392 (526)
436 TIGR02655 circ_KaiC circadian 89.3 0.65 1.4E-05 42.3 5.0 40 182-221 247-286 (484)
437 cd01882 BMS1 Bms1. Bms1 is an 89.3 0.38 8.3E-06 39.1 3.2 25 197-221 38-62 (225)
438 KOG1942 DNA helicase, TBP-inte 89.3 0.73 1.6E-05 39.2 4.8 52 173-224 36-90 (456)
439 PRK13545 tagH teichoic acids e 89.3 0.33 7.3E-06 44.6 3.0 25 197-221 49-73 (549)
440 TIGR03797 NHPM_micro_ABC2 NHPM 89.2 0.32 6.8E-06 46.2 3.0 24 197-220 478-501 (686)
441 PRK13894 conjugal transfer ATP 89.2 0.39 8.4E-06 41.3 3.2 24 198-221 148-171 (319)
442 KOG0780 Signal recognition par 89.2 0.44 9.6E-06 41.8 3.5 27 197-223 100-126 (483)
443 KOG2227 Pre-initiation complex 89.2 0.64 1.4E-05 41.8 4.6 52 172-223 147-200 (529)
444 COG1135 AbcC ABC-type metal io 89.1 0.35 7.6E-06 41.2 2.8 23 197-219 31-53 (339)
445 PRK14723 flhF flagellar biosyn 89.1 0.41 8.8E-06 45.8 3.6 25 198-222 185-209 (767)
446 PRK15115 response regulator Gl 89.1 0.6 1.3E-05 41.7 4.5 46 176-221 135-180 (444)
447 PRK10733 hflB ATP-dependent me 89.0 0.35 7.5E-06 45.7 3.1 25 200-224 187-211 (644)
448 smart00350 MCM minichromosome 89.0 0.73 1.6E-05 42.3 5.1 48 174-221 202-259 (509)
449 cd04178 Nucleostemin_like Nucl 89.0 0.6 1.3E-05 36.4 3.9 24 198-221 117-140 (172)
450 COG1119 ModF ABC-type molybden 88.9 0.36 7.8E-06 39.8 2.7 22 200-221 59-80 (257)
451 PRK05506 bifunctional sulfate 88.9 0.42 9.2E-06 45.0 3.6 27 197-223 459-485 (632)
452 TIGR01420 pilT_fam pilus retra 88.9 0.52 1.1E-05 40.9 3.9 26 198-223 122-147 (343)
453 COG4778 PhnL ABC-type phosphon 88.8 0.45 9.7E-06 37.3 3.0 26 197-222 36-61 (235)
454 TIGR01193 bacteriocin_ABC ABC- 88.7 0.36 7.7E-06 46.0 2.9 25 197-221 499-523 (708)
455 TIGR00958 3a01208 Conjugate Tr 88.7 0.39 8.4E-06 45.9 3.2 26 196-221 505-530 (711)
456 COG1162 Predicted GTPases [Gen 88.6 0.58 1.3E-05 39.7 3.8 35 182-221 153-187 (301)
457 PRK09302 circadian clock prote 88.6 0.9 1.9E-05 41.6 5.4 39 182-220 15-53 (509)
458 COG2812 DnaX DNA polymerase II 88.5 0.32 6.8E-06 44.5 2.4 47 174-221 15-61 (515)
459 TIGR01842 type_I_sec_PrtD type 88.5 0.4 8.7E-06 44.2 3.1 25 197-221 343-367 (544)
460 PLN03186 DNA repair protein RA 88.5 0.61 1.3E-05 40.5 4.0 38 182-219 107-144 (342)
461 TIGR03796 NHPM_micro_ABC1 NHPM 88.4 0.38 8.2E-06 45.8 3.0 25 197-221 504-528 (710)
462 PRK05973 replicative DNA helic 88.4 0.7 1.5E-05 38.0 4.1 25 197-221 63-87 (237)
463 PRK14086 dnaA chromosomal repl 88.4 0.8 1.7E-05 42.8 4.9 26 198-223 314-339 (617)
464 TIGR02915 PEP_resp_reg putativ 88.3 0.57 1.2E-05 41.9 3.8 46 175-221 139-185 (445)
465 PRK13705 plasmid-partitioning 88.2 1.1 2.3E-05 39.7 5.5 26 197-222 105-131 (388)
466 COG1117 PstB ABC-type phosphat 88.1 0.53 1.1E-05 38.2 3.1 24 196-219 31-54 (253)
467 COG4525 TauB ABC-type taurine 88.1 0.51 1.1E-05 37.9 3.0 21 200-220 33-53 (259)
468 PRK13657 cyclic beta-1,2-gluca 88.1 0.42 9.1E-06 44.5 3.0 25 197-221 360-384 (588)
469 PRK11174 cysteine/glutathione 88.0 0.42 9.2E-06 44.4 3.0 24 197-220 375-398 (588)
470 PF13481 AAA_25: AAA domain; P 88.0 0.64 1.4E-05 36.3 3.6 23 200-222 34-56 (193)
471 COG0802 Predicted ATPase or ki 87.9 1.1 2.3E-05 34.2 4.5 42 182-223 9-50 (149)
472 TIGR02857 CydD thiol reductant 87.9 0.44 9.6E-06 43.7 3.0 24 197-220 347-370 (529)
473 COG0468 RecA RecA/RadA recombi 87.8 0.79 1.7E-05 38.6 4.2 36 186-221 48-83 (279)
474 TIGR03453 partition_RepA plasm 87.7 1.2 2.6E-05 39.3 5.5 26 197-222 103-129 (387)
475 PRK10522 multidrug transporter 87.7 0.48 1E-05 43.7 3.1 25 197-221 348-372 (547)
476 TIGR02858 spore_III_AA stage I 87.7 0.86 1.9E-05 38.3 4.3 27 197-223 110-136 (270)
477 PRK11160 cysteine/glutathione 87.6 0.44 9.6E-06 44.3 2.8 25 197-221 365-389 (574)
478 PLN02772 guanylate kinase 87.6 0.62 1.3E-05 41.2 3.5 26 197-222 134-159 (398)
479 TIGR03375 type_I_sec_LssB type 87.6 0.47 1E-05 45.1 3.0 24 197-220 490-513 (694)
480 PRK15494 era GTPase Era; Provi 87.6 0.45 9.8E-06 41.2 2.7 24 198-221 52-75 (339)
481 COG0552 FtsY Signal recognitio 87.5 0.83 1.8E-05 39.3 4.1 28 196-223 137-164 (340)
482 COG0541 Ffh Signal recognition 87.5 1.1 2.4E-05 39.9 5.0 28 197-224 99-126 (451)
483 TIGR02768 TraA_Ti Ti-type conj 87.5 0.85 1.9E-05 43.8 4.7 24 199-222 369-392 (744)
484 TIGR02203 MsbA_lipidA lipid A 87.5 0.52 1.1E-05 43.6 3.2 25 197-221 357-381 (571)
485 PHA02519 plasmid partition pro 87.5 1.3 2.9E-05 39.1 5.6 40 183-222 86-131 (387)
486 COG1875 NYN ribonuclease and A 87.4 0.84 1.8E-05 39.9 4.1 37 179-217 228-264 (436)
487 PRK10789 putative multidrug tr 87.4 0.47 1E-05 44.0 2.9 25 197-221 340-364 (569)
488 PRK13833 conjugal transfer pro 87.3 0.62 1.3E-05 40.1 3.3 22 201-222 147-168 (323)
489 KOG1547 Septin CDC10 and relat 87.3 1.1 2.3E-05 37.0 4.4 46 175-221 24-69 (336)
490 TIGR00368 Mg chelatase-related 87.3 0.63 1.4E-05 42.6 3.5 43 174-220 191-233 (499)
491 COG2074 2-phosphoglycerate kin 87.2 0.63 1.4E-05 38.6 3.1 26 198-223 89-114 (299)
492 KOG0728 26S proteasome regulat 87.1 0.88 1.9E-05 37.9 3.9 47 175-221 146-204 (404)
493 PRK13869 plasmid-partitioning 87.1 1.4 3.1E-05 39.2 5.6 25 197-221 120-145 (405)
494 KOG2702 Predicted panthothenat 87.0 0.96 2.1E-05 37.2 4.0 27 195-221 116-142 (323)
495 TIGR01192 chvA glucan exporter 86.9 0.54 1.2E-05 43.8 3.0 24 197-220 360-383 (585)
496 PRK12269 bifunctional cytidyla 86.9 0.66 1.4E-05 45.2 3.6 25 199-223 35-59 (863)
497 TIGR02204 MsbA_rel ABC transpo 86.9 0.59 1.3E-05 43.3 3.2 25 197-221 365-389 (576)
498 PRK10790 putative multidrug tr 86.8 0.55 1.2E-05 43.7 3.0 25 197-221 366-390 (592)
499 KOG0927 Predicted transporter 86.7 0.47 1E-05 43.3 2.3 24 198-221 101-124 (614)
500 KOG0066 eIF2-interacting prote 86.7 0.46 9.9E-06 42.6 2.2 24 198-221 290-313 (807)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-49 Score=387.74 Aligned_cols=216 Identities=45% Similarity=0.779 Sum_probs=196.3
Q ss_pred CCCCCCcccEEEccccccCCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHH
Q 045657 10 SPRNINKYDVFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLD 89 (227)
Q Consensus 10 s~~~~~~~dvFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~ 89 (227)
|++..++|||||||+|+|++.+|++||+.+|.++||.+|+|++++.|+.|.+++.+||++|+++|||||++|++|.||++
T Consensus 6 ~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~ 85 (1153)
T PLN03210 6 SSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLN 85 (1153)
T ss_pred CCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHH
Confidence 34567999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccceeeeEEeecCCCccccccCCccCchhhHHHHhhhhHHHHHHHHHHHHHHhhhcCCccccc-ccccc
Q 045657 90 ELVKILQCKREYAQIVIPVFYRVDPSDVRNQTGPFGDSFSKLEERFKENSEKLKSWRNALKEAASFSGFDSQNF-RLAEM 168 (227)
Q Consensus 90 El~~~~~~~~~~~~~iipif~~v~~~~vr~~~~~~~~~f~~~~~~~~~~~e~i~~w~~aL~~i~~~~g~~~~~~-~e~~~ 168 (227)
||+++++++++.++.|+||||+|+|++||++.|.|+++|.++.... ..+++++|+.||.+++++.|+.+... .|+++
T Consensus 86 el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~ 163 (1153)
T PLN03210 86 ELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWPNEAKM 163 (1153)
T ss_pred HHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCCCHHHH
Confidence 9999999999899999999999999999999999999999866543 34679999999999999999887643 35544
Q ss_pred -----------C---CCCccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCCC
Q 045657 169 -----------S---PRNYKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKISSNFE 227 (227)
Q Consensus 169 -----------l---~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~f~ 227 (227)
+ +.....+++|++.+++++..+|..+..+++++|||||||+||||||+++|+++..+|+
T Consensus 164 i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~ 236 (1153)
T PLN03210 164 IEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQ 236 (1153)
T ss_pred HHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCC
Confidence 1 4455688999999999999999877788999999999999999999999999888774
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=5.4e-38 Score=242.64 Aligned_cols=137 Identities=32% Similarity=0.569 Sum_probs=124.7
Q ss_pred CCCCCCCCcccEEEccccccCCccHHHHHHHHHhhCCCeeEEeC-CCCCCCcchHHHHHHHHhcccEEEEeecCcccchh
Q 045657 8 SLSPRNINKYDVFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDD-QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRW 86 (227)
Q Consensus 8 ~~s~~~~~~~dvFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~w 86 (227)
|+|++..++|||||||+|+|++.+|+++|+.+|+++||++|+|+ ++++|+.|.+.|.+||++|+++|+|||++|++|+|
T Consensus 18 ~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~W 97 (187)
T PLN03194 18 PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYF 97 (187)
T ss_pred ccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchh
Confidence 56677889999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhccceeeeEEeecCCCccccc-cCCccCchhhHHHHhhhhHHHHHHHHHHHHHHhhhcCCccc
Q 045657 87 CLDELVKILQCKREYAQIVIPVFYRVDPSDVRNQ-TGPFGDSFSKLEERFKENSEKLKSWRNALKEAASFSGFDSQ 161 (227)
Q Consensus 87 c~~El~~~~~~~~~~~~~iipif~~v~~~~vr~~-~~~~~~~f~~~~~~~~~~~e~i~~w~~aL~~i~~~~g~~~~ 161 (227)
|++||.+++++. ..|+||||+++|++|+.+ .+.+ ..+++++|+.||.+++++.|+.++
T Consensus 98 CLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~-------------~~e~v~~Wr~AL~~va~l~G~~~~ 156 (187)
T PLN03194 98 CLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGTC-------------PDEEIRRFNWALEEAKYTVGLTFD 156 (187)
T ss_pred HHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCCC-------------CHHHHHHHHHHHHHHhccccccCC
Confidence 999999998753 479999999999999997 3321 236799999999999999997664
No 3
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.87 E-value=1.3e-23 Score=159.55 Aligned_cols=132 Identities=33% Similarity=0.561 Sum_probs=107.2
Q ss_pred EEEccccccCCccHHHHHHHHHhhC--CCeeEEeC-CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHH
Q 045657 19 VFLSFRGEDTRDNFTSHLYSALSLK--SIQTFIDD-QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKIL 95 (227)
Q Consensus 19 vFISy~~~D~~~~~~~~L~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~ 95 (227)
|||||++.+.+..|+.+|.++|++. |+++|+++ |+.+|..+.+++.++|++|+++|+|+|++|+.|+||+.|+..++
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999433455999999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred HHhhhc--cceeeeEEeecCCCccc-cccCCccCchhhHHHHhhhh--HHHHHHHHHHHH
Q 045657 96 QCKREY--AQIVIPVFYRVDPSDVR-NQTGPFGDSFSKLEERFKEN--SEKLKSWRNALK 150 (227)
Q Consensus 96 ~~~~~~--~~~iipif~~v~~~~vr-~~~~~~~~~f~~~~~~~~~~--~e~i~~w~~aL~ 150 (227)
.+.... ...|+|+|+++.+.+++ .+.+.+...+.......... ..+...|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 999554 48999999999999988 56666665555544443332 345677877653
No 4
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.86 E-value=1.6e-21 Score=147.42 Aligned_cols=136 Identities=41% Similarity=0.701 Sum_probs=106.4
Q ss_pred cccEEEcccc-ccCCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHH
Q 045657 16 KYDVFLSFRG-EDTRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKI 94 (227)
Q Consensus 16 ~~dvFISy~~-~D~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~ 94 (227)
.|||||||++ .+....|+.+|...|+..|+.+|.|+....+... .+|.++|++|+++|+|+|++|+.|+||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 4999999999 3445679999999999999999998743333333 4999999999999999999999999999999999
Q ss_pred HHHhhh-ccceeeeEEeecCCCccccccCCccCchhhHHHHhhhhHHHHHHHHHHHHHHh
Q 045657 95 LQCKRE-YAQIVIPVFYRVDPSDVRNQTGPFGDSFSKLEERFKENSEKLKSWRNALKEAA 153 (227)
Q Consensus 95 ~~~~~~-~~~~iipif~~v~~~~vr~~~~~~~~~f~~~~~~~~~~~e~i~~w~~aL~~i~ 153 (227)
...... ...+||||+++..|..+..+.+.+...+............. ..|+..+..++
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 988744 56899999999888777777777777666542222222111 57888776654
No 5
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.70 E-value=4.3e-18 Score=121.93 Aligned_cols=87 Identities=30% Similarity=0.538 Sum_probs=74.4
Q ss_pred EEEccccccCCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHh
Q 045657 19 VFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCK 98 (227)
Q Consensus 19 vFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~ 98 (227)
|||||++.|. .+|++|...|+..|+.+|+|.++.+|+.+.+.|.+++++|+.+|+++|++|..|+||..|+..+..
T Consensus 1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-- 76 (102)
T PF13676_consen 1 VFISYSSEDR--EFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-- 76 (102)
T ss_dssp EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence 8999999994 489999999999999999998889999999999999999999999999999999999999999843
Q ss_pred hhccceeeeEEee
Q 045657 99 REYAQIVIPVFYR 111 (227)
Q Consensus 99 ~~~~~~iipif~~ 111 (227)
.+..|+||..+
T Consensus 77 --~~~~iipv~~~ 87 (102)
T PF13676_consen 77 --RGKPIIPVRLD 87 (102)
T ss_dssp --TSESEEEEECS
T ss_pred --CCCEEEEEEEC
Confidence 34479999854
No 6
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.98 E-value=1.3e-09 Score=95.20 Aligned_cols=93 Identities=24% Similarity=0.408 Sum_probs=78.9
Q ss_pred CCCcccEEEccccccCCccHHHHHHHHHhhCCCeeEEeC-CCCCCCcchHHHHHHHHhcccEEEEeecCcc--------c
Q 045657 13 NINKYDVFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDD-QLNRGDEISQSLVYAIENSAISLIIFSEGYA--------S 83 (227)
Q Consensus 13 ~~~~~dvFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~--------~ 83 (227)
..+..||||||++.- ...+++.|+-.|+.+|++||+|- .+..|..- +.+.+.|..++.+|+|+||+.+ .
T Consensus 609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGKFd-ssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGKFD-SSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccccc-HHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 356789999999875 44599999999999999999998 88888754 7888999999999999999965 3
Q ss_pred chhhHHHHHHHHHHhhhccceeeeEEee
Q 045657 84 SRWCLDELVKILQCKREYAQIVIPVFYR 111 (227)
Q Consensus 84 S~wc~~El~~~~~~~~~~~~~iipif~~ 111 (227)
-.|...|+..++++.+ .|||||-.
T Consensus 687 eDWVHKEl~~Afe~~K----NIiPI~D~ 710 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQK----NIIPIFDT 710 (832)
T ss_pred HHHHHHHHHHHHHhcC----Ceeeeecc
Confidence 4688899999988775 59999943
No 7
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.69 E-value=1.6e-08 Score=96.80 Aligned_cols=48 Identities=40% Similarity=0.772 Sum_probs=42.1
Q ss_pred cccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH---hhcCCC
Q 045657 178 VGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK---ISSNFE 227 (227)
Q Consensus 178 ~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~---~~~~f~ 227 (227)
+|.+..++++.+.|...+. .++||+||||+||||||+.+||+ ++.+||
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd 211 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFD 211 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCc
Confidence 9999999999999985543 89999999999999999999998 345675
No 8
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.56 E-value=1.1e-07 Score=70.97 Aligned_cols=88 Identities=20% Similarity=0.353 Sum_probs=46.7
Q ss_pred ccEEEccccccCCccHHHHHHHHHhhC-------CCee----------EEeC-CCCCCCcchHHHHHHHHhcccEEEEee
Q 045657 17 YDVFLSFRGEDTRDNFTSHLYSALSLK-------SIQT----------FIDD-QLNRGDEISQSLVYAIENSAISLIIFS 78 (227)
Q Consensus 17 ~dvFISy~~~D~~~~~~~~L~~~L~~~-------g~~~----------~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S 78 (227)
|.|||||++.|.. ..+..|...+... .+.. +.+. +......|...|.+.|..|.++||++|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5799999999955 2677777777663 2221 1122 223345788899999999999999999
Q ss_pred cCcccchhhHHHHHHHHHHhhhccceeeeEE
Q 045657 79 EGYASSRWCLDELVKILQCKREYAQIVIPVF 109 (227)
Q Consensus 79 ~~~~~S~wc~~El~~~~~~~~~~~~~iipif 109 (227)
++-..|.|+..|+..++. .+..|+-|.
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~ 106 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVY 106 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEE
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEE
Confidence 999999999999998876 333566664
No 9
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=98.06 E-value=7e-06 Score=62.59 Aligned_cols=64 Identities=23% Similarity=0.396 Sum_probs=53.7
Q ss_pred cEEEccccccC-CccHHHHHHHHHhhC-CCeeEEeC-CCCC--CCcchHHHHHHHHhcccEEEEeecCc
Q 045657 18 DVFLSFRGEDT-RDNFTSHLYSALSLK-SIQTFIDD-QLNR--GDEISQSLVYAIENSAISLIIFSEGY 81 (227)
Q Consensus 18 dvFISy~~~D~-~~~~~~~L~~~L~~~-g~~~~~d~-~~~~--g~~~~~~i~~~i~~s~~~i~v~S~~~ 81 (227)
-|||||++... ...+|..|...|+.. |+.|.+|. +... +.....-+.+.+++++.+|+|+|+.+
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 49999999543 234689999999999 99999999 7743 77788899999999999999999654
No 10
>PTZ00202 tuzin; Provisional
Probab=97.70 E-value=7.1e-05 Score=66.27 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=43.0
Q ss_pred CCCccCcccccchhHHHHHHHhhcCC-CCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 170 PRNYKNQLVGVESRVKEIESLLGAES-KYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 170 ~~~~~~~~~g~~~~~~~~~~~l~~~~-~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.+...+.|+||+.++..|...|...+ ...+++.|.|++|+|||||++.....
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~ 309 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK 309 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44567899999999999999886433 33569999999999999999988765
No 11
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.58 E-value=0.00014 Score=59.01 Aligned_cols=57 Identities=25% Similarity=0.414 Sum_probs=37.7
Q ss_pred CCCccCcccccchhHHHHHHHhh---cCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCC
Q 045657 170 PRNYKNQLVGVESRVKEIESLLG---AESKYVYTLGIWGFGGIGKTTIARAIFDKISSNF 226 (227)
Q Consensus 170 ~~~~~~~~~g~~~~~~~~~~~l~---~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~f 226 (227)
.|..-.+++|.+.-+..+.-++. .......-+=.||.+|+||||||..+.+.+..+|
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNF 78 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCe
Confidence 44556899999887777655553 2234466677899999999999999999876654
No 12
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.53 E-value=0.0001 Score=63.54 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=41.2
Q ss_pred ccCcccccchhHHHHHHHhhc---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 173 YKNQLVGVESRVKEIESLLGA---ESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~---~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
...+++|++..++.+..++.. .......+-++|.+|+||||||+.+.+.+..
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 457899999999999887753 1233456779999999999999999988543
No 13
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.52 E-value=0.00014 Score=63.30 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=40.7
Q ss_pred ccCcccccchhHHHHHHHhhcC--CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 173 YKNQLVGVESRVKEIESLLGAE--SKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~~--~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.+..++||++++++|...|... ......+-|+|.+|+|||++++++++.+.
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3568999999999999988631 12234578899999999999999998754
No 14
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.47 E-value=0.00014 Score=64.02 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=40.5
Q ss_pred ccCcccccchhHHHHHHHhhcC--CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 173 YKNQLVGVESRVKEIESLLGAE--SKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~~--~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.+..++||+++++++...|... ......+-|+|.+|+|||++++.+++++.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~ 80 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE 80 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999887432 12233456999999999999999998864
No 15
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.16 E-value=0.00047 Score=59.79 Aligned_cols=49 Identities=14% Similarity=0.262 Sum_probs=40.9
Q ss_pred cccccchhHHHHHHHhhcC----CCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 176 QLVGVESRVKEIESLLGAE----SKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 176 ~~~g~~~~~~~~~~~l~~~----~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
+++|.++.++++.+.+... ....+++.++|..|.||||||+++.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999998887532 234689999999999999999999887543
No 16
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.02 E-value=0.00071 Score=60.18 Aligned_cols=50 Identities=28% Similarity=0.470 Sum_probs=36.6
Q ss_pred cCcccccchhHHH---HHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 174 KNQLVGVESRVKE---IESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 174 ~~~~~g~~~~~~~---~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
..+++|++.-+.. +..++... ....+-++|.+|+||||||+.+.+.....
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~ 63 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAP 63 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4567887766555 77777543 34456789999999999999998875443
No 17
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.96 E-value=0.00077 Score=58.91 Aligned_cols=52 Identities=21% Similarity=0.354 Sum_probs=39.6
Q ss_pred cCcccccchhHHHHHHHhhcC--C---------CCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 174 KNQLVGVESRVKEIESLLGAE--S---------KYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~--~---------~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
..++.|++..++++.+.+... . ...+-+-++|.+|+|||+||+++++.....
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~ 183 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 183 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 457889999999998866421 1 123457889999999999999999876544
No 18
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=96.95 E-value=0.0032 Score=46.50 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=50.0
Q ss_pred EEEccccccCCccHHHHHHHHHhhCCCeeEE-eCCCCCCCcchHHHHHHHHhcccEEEEeecC
Q 045657 19 VFLSFRGEDTRDNFTSHLYSALSLKSIQTFI-DDQLNRGDEISQSLVYAIENSAISLIIFSEG 80 (227)
Q Consensus 19 vFISy~~~D~~~~~~~~L~~~L~~~g~~~~~-d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~ 80 (227)
|||.|+ .| ..+++.+...|+..|+.+.+ +.....|..+.+.+.+.+.+++.+|++++|+
T Consensus 2 VFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 2 VFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred EEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 899998 44 24789999999988888544 3356889999999999999999999999985
No 19
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.85 E-value=0.0015 Score=57.77 Aligned_cols=52 Identities=19% Similarity=0.336 Sum_probs=39.4
Q ss_pred cCcccccchhHHHHHHHhhc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 174 KNQLVGVESRVKEIESLLGA-----------ESKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~-----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
..++.|++..++++.+.+.. +-...+-+-++|.+|+|||+||+++++.....
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence 35788999999999886632 11234557789999999999999999876543
No 20
>PRK04195 replication factor C large subunit; Provisional
Probab=96.78 E-value=0.0014 Score=59.44 Aligned_cols=50 Identities=24% Similarity=0.334 Sum_probs=40.8
Q ss_pred ccCcccccchhHHHHHHHhhcCC--CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 173 YKNQLVGVESRVKEIESLLGAES--KYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~~~--~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+++|.+..++.+..|+..-. ...+.+-|+|..|+||||+|+++.+.+
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34678999999999999886421 225678899999999999999998875
No 21
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.0022 Score=53.63 Aligned_cols=55 Identities=22% Similarity=0.416 Sum_probs=40.5
Q ss_pred CccCcccccchhHHHHHHHhhc---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCC
Q 045657 172 NYKNQLVGVESRVKEIESLLGA---ESKYVYTLGIWGFGGIGKTTIARAIFDKISSNF 226 (227)
Q Consensus 172 ~~~~~~~g~~~~~~~~~~~l~~---~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~f 226 (227)
..-.+++|.++-++++.-.+.. .....-=+-++|.+|+||||||..+.+.+..++
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 3457899998888777655542 222344466889999999999999999876653
No 22
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.0018 Score=56.46 Aligned_cols=47 Identities=30% Similarity=0.506 Sum_probs=31.6
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCC
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKISSNF 226 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~f 226 (227)
.+++|.+..+. .++.. ..+...=.||.+|+||||||+.+.......|
T Consensus 30 ~HLlg~~~~lr---r~v~~--~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f 76 (436)
T COG2256 30 EHLLGEGKPLR---RAVEA--GHLHSMILWGPPGTGKTTLARLIAGTTNAAF 76 (436)
T ss_pred HhhhCCCchHH---HHHhc--CCCceeEEECCCCCCHHHHHHHHHHhhCCce
Confidence 44555544443 34432 2455556899999999999999988766555
No 23
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.63 E-value=0.0028 Score=61.22 Aligned_cols=47 Identities=28% Similarity=0.499 Sum_probs=38.5
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..++||+++++.+...|.....+ -+-++|.+|+|||+||+.+..++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~--n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKN--NPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccC--CeEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999998755432 234899999999999999988754
No 24
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.57 E-value=0.002 Score=56.52 Aligned_cols=29 Identities=24% Similarity=0.129 Sum_probs=24.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhc-CCC
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDKISS-NFE 227 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~~~~-~f~ 227 (227)
.-.+|+|.+|+|||||+++||+.+.. +||
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFD 199 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPE 199 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCC
Confidence 45788999999999999999999654 454
No 25
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.57 E-value=0.0038 Score=53.29 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=40.8
Q ss_pred CccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 172 NYKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 172 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
....+++|.+..++.+..++..+. -..++-++|..|+||||+|+++++.+.
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 345788999999999998887432 245777799999999999999988753
No 26
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.57 E-value=0.003 Score=59.97 Aligned_cols=51 Identities=29% Similarity=0.464 Sum_probs=36.2
Q ss_pred cCcccccchhHH---HHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCC
Q 045657 174 KNQLVGVESRVK---EIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKISSNF 226 (227)
Q Consensus 174 ~~~~~g~~~~~~---~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~f 226 (227)
..+++|++..+. .+..++..+ ....+-++|.+|+||||||+.+++.....|
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f 80 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANHTRAHF 80 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 356788776553 455555533 344567899999999999999998765544
No 27
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0035 Score=58.35 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=43.5
Q ss_pred ccCcccccchhHHHHHHHhhc----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCC
Q 045657 173 YKNQLVGVESRVKEIESLLGA----ESKYVYTLGIWGFGGIGKTTIARAIFDKISSNF 226 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~----~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~f 226 (227)
...+..|.++-++.+.+.|.- ......+++++|.+|+|||.|++.+.+.+...|
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf 378 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF 378 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCE
Confidence 346788999999999888752 223357999999999999999999999876655
No 28
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.56 E-value=0.0039 Score=53.47 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=37.6
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|++..++.+..++..+. ...+-++|..|+||||+|+++.+.+
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3678899999999988886442 2235689999999999999988875
No 29
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.48 E-value=0.0028 Score=41.62 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 045657 200 TLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
++.|.|..|.||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999988764
No 30
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.46 E-value=0.0044 Score=59.99 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=39.1
Q ss_pred ccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 173 YKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
....++||+.+++.+...|...... -+-++|.+|+||||||+.+..++.
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~~~~--n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRRQN--NPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcCCcC--ceeEECCCCCCHHHHHHHHHHHHh
Confidence 3468899999999999888754322 234889999999999999998863
No 31
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.42 E-value=0.0047 Score=56.72 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=40.4
Q ss_pred CcccccchhHHHHHHHhh----cCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 175 NQLVGVESRVKEIESLLG----AESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~----~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.++.|.++.++.+.+.|. ......+++.++|..|+||||||+.+.+.+.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 468999999999988772 2234567999999999999999999887654
No 32
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.41 E-value=0.0054 Score=52.15 Aligned_cols=47 Identities=30% Similarity=0.368 Sum_probs=38.5
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|++..++.+..++..+. ...+-++|..|+||||+|+.+.+.+
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4678899999999998886543 2346889999999999999998875
No 33
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.39 E-value=0.0057 Score=58.73 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=41.1
Q ss_pred ccCcccccchhHHHHHHHhhc---CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 173 YKNQLVGVESRVKEIESLLGA---ESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~---~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.+..+.||++++++|...|.. +.....++-|+|..|+|||++++.|.++++
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 346888999999999887753 233346777999999999999999988764
No 34
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.37 E-value=0.0039 Score=51.76 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...+.|+|.+|+|||||++.+++.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 44788999999999999999998754
No 35
>PLN03025 replication factor C subunit; Provisional
Probab=96.34 E-value=0.0058 Score=52.43 Aligned_cols=48 Identities=25% Similarity=0.268 Sum_probs=36.8
Q ss_pred ccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 173 YKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.-.+++|.+.-+..|..++..+... . +-++|..|+||||+|+++.+.+
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~~~~-~-lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDGNMP-N-LILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcCCCc-e-EEEECCCCCCHHHHHHHHHHHH
Confidence 3467889888888888877644322 2 4589999999999999998875
No 36
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.31 E-value=0.0062 Score=59.08 Aligned_cols=47 Identities=21% Similarity=0.401 Sum_probs=38.2
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...++||+.+++.+...|.....+ -+-++|.+|+|||+||+.+..++
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~--n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKN--NPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcC--ceEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999988765432 23488999999999999998875
No 37
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.30 E-value=0.007 Score=48.87 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=30.3
Q ss_pred cchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 180 VESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...-++.+..++.. .....+-++|..|+|||+||+++++..
T Consensus 22 ~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 22 NAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred cHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34456666666532 335678899999999999999998874
No 38
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.29 E-value=0.0058 Score=54.69 Aligned_cols=51 Identities=25% Similarity=0.389 Sum_probs=38.0
Q ss_pred CcccccchhHHHHHHHhhc--C---------CCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 175 NQLVGVESRVKEIESLLGA--E---------SKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~--~---------~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
.++.|.+..++++.+.+.. . -...+-+-++|..|+|||+||+++++.....
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~ 244 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT 244 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 5667888888888876642 1 1223456789999999999999999976543
No 39
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.23 E-value=0.0064 Score=56.84 Aligned_cols=49 Identities=24% Similarity=0.418 Sum_probs=38.5
Q ss_pred CccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 172 NYKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 172 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
....+++|+...+..+.+.+... ....+.|+|.+|+||||||+.+++..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 34467899998888887766432 24468899999999999999998764
No 40
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.23 E-value=0.0087 Score=48.58 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=27.2
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
+..+..+.. .....+.+-++|..|+|||+||+++++..
T Consensus 29 ~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 29 VARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred HHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344444433 22345678899999999999999999874
No 41
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.22 E-value=0.01 Score=48.44 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=24.7
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 195 SKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 195 ~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.....++||.|..|.|||||++.+.+.+.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34578999999999999999999887643
No 42
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.21 E-value=0.0092 Score=52.19 Aligned_cols=48 Identities=27% Similarity=0.319 Sum_probs=38.8
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-++.+...+..+. -...+-++|..|+||||+|+.+.+.+
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 4678999998988888886543 24556789999999999999998875
No 43
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.19 E-value=0.0071 Score=57.74 Aligned_cols=46 Identities=28% Similarity=0.380 Sum_probs=37.8
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..++||+.+++.+...|...... -+-++|.+|+|||+||+.+..++
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~--n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKN--NPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCC--ceEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999888754322 23488999999999999998875
No 44
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.18 E-value=0.0088 Score=44.69 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=28.1
Q ss_pred hHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 183 RVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
+..++-+.|...-....++.+.|.-|.||||+++.+.+.+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444444443222344589999999999999999998874
No 45
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.15 E-value=0.0089 Score=58.01 Aligned_cols=46 Identities=22% Similarity=0.435 Sum_probs=37.6
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..++||+.+++.+...|...... -+-++|.+|+|||+||+.+..++
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~--n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKN--NPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCC--ceEEEcCCCCCHHHHHHHHHHHH
Confidence 56899999999999988765432 23478999999999999988875
No 46
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.0072 Score=56.41 Aligned_cols=53 Identities=26% Similarity=0.349 Sum_probs=43.7
Q ss_pred cCcccccchhHHHHHHHhh----cCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCC
Q 045657 174 KNQLVGVESRVKEIESLLG----AESKYVYTLGIWGFGGIGKTTIARAIFDKISSNF 226 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~----~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~f 226 (227)
..+..|+++-++.+.+.|. .++.+..+++.+|.+|+|||.+|+.|...+.-.|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 3577899888888888775 3456688999999999999999999999876554
No 47
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.13 E-value=0.0076 Score=53.90 Aligned_cols=45 Identities=27% Similarity=0.286 Sum_probs=35.2
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.++++.+..++.+...|.. ...+-++|++|+|||++|+.+++.+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567777888888877763 23466799999999999999988754
No 48
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.04 E-value=0.0093 Score=56.48 Aligned_cols=48 Identities=27% Similarity=0.321 Sum_probs=38.4
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-++.|..++..+.-. ..+-++|..|+||||+|+.+.+.+
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gRL~-HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGRLH-HAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCCC-eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999988755433 334489999999999999888764
No 49
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.01 E-value=0.011 Score=54.73 Aligned_cols=49 Identities=27% Similarity=0.234 Sum_probs=39.0
Q ss_pred ccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 173 YKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.-.+++|.+.-++.+...+..+.- .+.+-++|..|+||||+|+.+.+.+
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~rl-~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNKL-THAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCC-CceEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999998888864432 3556689999999999999998874
No 50
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.94 E-value=0.013 Score=54.70 Aligned_cols=48 Identities=31% Similarity=0.330 Sum_probs=39.3
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-++.|..++..+.- ...+-++|..|+||||+|+.+.+.+
T Consensus 14 FddVIGQe~vv~~L~~aI~~grl-~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGRL-HHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC-CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999998875532 3566789999999999999988764
No 51
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.93 E-value=0.011 Score=52.27 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=38.7
Q ss_pred cCcccccchhHHHHHHHhhc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 174 KNQLVGVESRVKEIESLLGA-----------ESKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~-----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
-.++.|.+..++++.+.+.. +-...+-+-++|.+|+|||+||+++.+.....
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~ 206 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT 206 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 35778888888888776531 11234667789999999999999999875443
No 52
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.91 E-value=0.014 Score=55.85 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=37.4
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..++||+.+++.+...|..... .. +-++|.+|+|||+||+.++.++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~-~n-~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK-NN-PLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC-CC-eEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999998876432 22 2479999999999999998774
No 53
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.90 E-value=0.011 Score=48.55 Aligned_cols=53 Identities=17% Similarity=0.393 Sum_probs=38.7
Q ss_pred CccCcccccchhHHHHHHHhhc--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 172 NYKNQLVGVESRVKEIESLLGA--ESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 172 ~~~~~~~g~~~~~~~~~~~l~~--~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
....+++|.+.+++.|.+=... ......-+=+||..|.|||+|++++.+....
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~ 78 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD 78 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence 3457899999999988663221 1223455667999999999999999887543
No 54
>PRK06893 DNA replication initiation factor; Validated
Probab=95.88 E-value=0.016 Score=47.34 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+-+||..|+|||+|++++.+..
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999874
No 55
>PLN02796 D-glycerate 3-kinase
Probab=95.82 E-value=0.024 Score=49.04 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..-++||.|..|.|||||++.+...+.
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 467899999999999999999887653
No 56
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.79 E-value=0.016 Score=52.46 Aligned_cols=48 Identities=29% Similarity=0.286 Sum_probs=37.1
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-+..|...+..+. -...+-++|..|+||||+|+.+.+.+
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678998887788877776442 23456789999999999999998764
No 57
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.77 E-value=0.014 Score=52.64 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=38.3
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-+..|..++..+. -...+-++|..|+||||+|+.+.+.+
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4678999888888888887543 13456789999999999999998764
No 58
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.74 E-value=0.015 Score=53.05 Aligned_cols=48 Identities=27% Similarity=0.231 Sum_probs=38.6
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-++.|..++..+. -...+-++|..|+||||+|+.+.+.+
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578898888888888877543 24556789999999999999998875
No 59
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.73 E-value=0.0086 Score=49.00 Aligned_cols=24 Identities=46% Similarity=0.524 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...++||+|..|.|||||++.+..
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 355899999999999999998753
No 60
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.69 E-value=0.021 Score=49.38 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=27.9
Q ss_pred HHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 186 EIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 186 ~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.+.+.+........+|+|.|.+|.|||||+..+...+.
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444433345678999999999999999998766543
No 61
>PRK05439 pantothenate kinase; Provisional
Probab=95.68 E-value=0.025 Score=48.41 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
....+|||.|..|+||||+|+.+...+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999887654
No 62
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.67 E-value=0.013 Score=54.83 Aligned_cols=53 Identities=23% Similarity=0.292 Sum_probs=42.7
Q ss_pred CCCccCcccccchhHHHHHHHhhcCC---CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 170 PRNYKNQLVGVESRVKEIESLLGAES---KYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 170 ~~~~~~~~~g~~~~~~~~~~~l~~~~---~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.|....+++|.+..+++|..++.... ...+++.++|..|.||||+++.+.+.+
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44556789999999999998886433 345789999999999999999988764
No 63
>CHL00181 cbbX CbbX; Provisional
Probab=95.65 E-value=0.021 Score=48.31 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 045657 200 TLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.+-++|.+|+||||+|+.+++.
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999999765
No 64
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.63 E-value=0.015 Score=55.56 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=37.4
Q ss_pred CcccccchhHHHHHHHhhcC-----------CCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 175 NQLVGVESRVKEIESLLGAE-----------SKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~-----------~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
.++.|.+..++++.+++... -...+-+-++|..|+|||+||+++.+....
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~ 238 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA 238 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC
Confidence 45778988888887776321 122356779999999999999999887543
No 65
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.62 E-value=0.019 Score=52.76 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=38.0
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-+..|...+..+. -...+-++|..|+||||+|+.+.+.+
T Consensus 15 f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678899998888888886443 23445679999999999999998864
No 66
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.61 E-value=0.019 Score=52.51 Aligned_cols=48 Identities=23% Similarity=0.316 Sum_probs=38.6
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-++.|..++..+.- ...+=++|..|+||||+|+.+.+.+
T Consensus 15 f~divGq~~v~~~L~~~~~~~~l-~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQYL-HHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCC-CeeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999998875432 3345688999999999999988764
No 67
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.013 Score=50.55 Aligned_cols=51 Identities=22% Similarity=0.414 Sum_probs=35.8
Q ss_pred cccccchhHHHHHHHhhc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCC
Q 045657 176 QLVGVESRVKEIESLLGA-----------ESKYVYTLGIWGFGGIGKTTIARAIFDKISSNF 226 (227)
Q Consensus 176 ~~~g~~~~~~~~~~~l~~-----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~f 226 (227)
++=|-++++++|.+.+.. +-....=|-++|.+|.|||-||++|.++-...|
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF 213 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF 213 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE
Confidence 344678888888776532 112344566799999999999999999854433
No 68
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.60 E-value=0.014 Score=50.75 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
....+-+||.+|+||||||+.+...-+
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk 187 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSK 187 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcC
Confidence 456677899999999999999877533
No 69
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.59 E-value=0.019 Score=55.16 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=38.0
Q ss_pred CcccccchhHHHHHHHhhc----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 175 NQLVGVESRVKEIESLLGA----ESKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~----~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
.++.|.+.-++.+.+++.. ......++.++|..|+|||++|+++.+.+..+
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~ 374 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK 374 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4577888888887776531 22234578899999999999999999886543
No 70
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.023 Score=50.35 Aligned_cols=49 Identities=22% Similarity=0.221 Sum_probs=38.6
Q ss_pred ccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 173 YKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.-.+++|.+.-++.|..++..+. -...+-++|..|+||||+|+.+.+.+
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHh
Confidence 34678899888888888887543 23446689999999999999988875
No 71
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.56 E-value=0.024 Score=47.95 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 045657 200 TLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-+-++|.+|+||||+|+++.+.+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 46688999999999998776653
No 72
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.55 E-value=0.02 Score=52.96 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=26.0
Q ss_pred hhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 191 LGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 191 l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
+.....+..+|||.|..|.||||||+.+...+
T Consensus 58 L~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 58 LAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 33344568899999999999999999987653
No 73
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.49 E-value=0.014 Score=51.00 Aligned_cols=30 Identities=37% Similarity=0.625 Sum_probs=26.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
...+.++|||..|+|||.+|+++++.+.-.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 457899999999999999999999986544
No 74
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.47 E-value=0.031 Score=46.99 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+++.++|.+|+||||++..+...+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999998876654
No 75
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.46 E-value=0.028 Score=47.84 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=26.5
Q ss_pred HHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 187 IESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 187 ~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+.+-+........+++|.|.+|.|||||+..+...
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 33334334456889999999999999999987665
No 76
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.44 E-value=0.015 Score=51.31 Aligned_cols=30 Identities=27% Similarity=0.077 Sum_probs=25.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcC-CC
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKISSN-FE 227 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~~~-f~ 227 (227)
...++|+|.+|.|||||++.+++.+..+ |+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfd 198 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPE 198 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCc
Confidence 4568899999999999999999986554 53
No 77
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.39 E-value=0.03 Score=51.88 Aligned_cols=38 Identities=32% Similarity=0.442 Sum_probs=28.3
Q ss_pred HHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 186 EIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 186 ~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.|.++.........+|-+.|+.|.||||||+.+...+.
T Consensus 380 iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~ 417 (568)
T PRK05537 380 ELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLM 417 (568)
T ss_pred HHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhh
Confidence 33443333444566888999999999999999988764
No 78
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.38 E-value=0.026 Score=51.54 Aligned_cols=49 Identities=29% Similarity=0.275 Sum_probs=38.1
Q ss_pred ccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 173 YKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.-.+++|.+.-++.|...+..+. -...+-++|..|+||||+|+.+++.+
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999988888887766443 23456689999999999999998874
No 79
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.36 E-value=0.0087 Score=44.77 Aligned_cols=44 Identities=27% Similarity=0.315 Sum_probs=29.4
Q ss_pred cccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 178 VGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 178 ~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
||.-..++++.+.+..-...-..|-|.|..|+||+++|+.+|..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 35555666666655432223445678999999999999999886
No 80
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.36 E-value=0.016 Score=48.31 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..-+-++|.+|+||||+|+.+++.+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4456789999999999999998763
No 81
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.34 E-value=0.023 Score=51.86 Aligned_cols=50 Identities=24% Similarity=0.407 Sum_probs=37.2
Q ss_pred CcccccchhHHHHHHHhhc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 175 NQLVGVESRVKEIESLLGA-----------ESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~-----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
.++.|.+..++++...+.. +-...+-+-++|.+|+|||++|+++++.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 5667888888888776531 1122345778999999999999999998643
No 82
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.34 E-value=0.021 Score=48.41 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=21.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....+|||.|..|.||||+|+.+-.-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999876444
No 83
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.039 Score=48.34 Aligned_cols=50 Identities=20% Similarity=0.386 Sum_probs=38.9
Q ss_pred cCcccccchhHHHHHHHhhc---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 174 KNQLVGVESRVKEIESLLGA---ESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~---~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
+..+.+|+++++++...|.. +..... +-|+|..|+|||+.++.|.++++.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n-~~iyG~~GTGKT~~~~~v~~~l~~ 68 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSN-IIIYGPTGTGKTATVKFVMEELEE 68 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCcc-EEEECCCCCCHhHHHHHHHHHHHh
Confidence 44589999999999887653 222222 778899999999999999998654
No 84
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.32 E-value=0.023 Score=50.41 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=35.2
Q ss_pred CcccccchhHHHHHHHhhcC------------CCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 175 NQLVGVESRVKEIESLLGAE------------SKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~------------~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
..++|++..++.+.-.+... ....+-+-++|..|+|||+||+.+...+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 45778877777775444321 1112456789999999999999998876544
No 85
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.30 E-value=0.031 Score=49.71 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=36.8
Q ss_pred cCcccccchhHHHHHHHhhcC--------C----CCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 174 KNQLVGVESRVKEIESLLGAE--------S----KYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~--------~----~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
...++|.+..++.+...+... . ....-+-++|..|+|||+||+.+...+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 356788888888887666320 0 112456789999999999999988875443
No 86
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.29 E-value=0.024 Score=51.67 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=35.7
Q ss_pred ccCcccccchhHHHHHHHhh---c-------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 173 YKNQLVGVESRVKEIESLLG---A-------ESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~---~-------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
.-.+++|.+..++++.+++. . +....+-+-++|.+|+|||+||+++.+....
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~ 114 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 114 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34677888877776665443 1 1112334668999999999999999887543
No 87
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.027 Score=53.50 Aligned_cols=47 Identities=21% Similarity=0.419 Sum_probs=37.8
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..++||+.+++.+...|....++-.+ ++|-+|+|||+++.-...++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rIv 216 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRIV 216 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999876644222 359999999999998888743
No 88
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.27 E-value=0.032 Score=49.65 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=34.0
Q ss_pred CcccccchhHHHHHHHhh-------cC-----C--CCeEEEEEEcCCCchHHHHHHHHHHHhhcCC
Q 045657 175 NQLVGVESRVKEIESLLG-------AE-----S--KYVYTLGIWGFGGIGKTTIARAIFDKISSNF 226 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~-------~~-----~--~~~~~~~i~G~gG~GKTtla~~v~~~~~~~f 226 (227)
..++|.+.-++.|...+. .. + ....-+-++|..|+|||+||+.+...+...|
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 346787777776643331 00 0 1124577899999999999999988754433
No 89
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.26 E-value=0.028 Score=50.81 Aligned_cols=45 Identities=18% Similarity=0.100 Sum_probs=34.7
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...++|+++.++.+...+..+. -+-+.|.+|+|||+||+.+....
T Consensus 19 ~~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHh
Confidence 3568899988888876664321 35678999999999999998864
No 90
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.23 E-value=0.025 Score=48.36 Aligned_cols=27 Identities=22% Similarity=0.484 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
....|.++||.|.||||+++.+.+++.
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg 158 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLG 158 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999987754
No 91
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.19 E-value=0.016 Score=48.21 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...++|++|..|.|||||++.+..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~ 61 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG 61 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc
Confidence 456899999999999999998765
No 92
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.19 E-value=0.033 Score=52.03 Aligned_cols=49 Identities=22% Similarity=0.231 Sum_probs=38.2
Q ss_pred ccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 173 YKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.-.+++|.+.-+..|...+..+. -...+-++|..|+||||+|+.+.+.+
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999888888888886443 23446689999999999999988774
No 93
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.19 E-value=0.028 Score=52.88 Aligned_cols=48 Identities=33% Similarity=0.407 Sum_probs=38.9
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-++.|..++..+. -...+-++|..|+||||+|+.+.+.+
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4678999999999999887543 23566789999999999999987763
No 94
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.18 E-value=0.033 Score=43.02 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=28.5
Q ss_pred hhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 182 SRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..+++|.++|. + +++.++|..|+|||||.+.+...
T Consensus 24 ~g~~~l~~~l~----~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK----G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT----T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc----C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 45777777776 2 57889999999999999988765
No 95
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.14 E-value=0.031 Score=53.99 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=38.5
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+++|.+.-++.|..++..+.- ...+-++|..|+||||+|+.+.+.+
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl-~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRL-HHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCC-CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999988888888865432 3445689999999999999999875
No 96
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.14 E-value=0.035 Score=51.93 Aligned_cols=48 Identities=27% Similarity=0.349 Sum_probs=38.8
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+++|.+.-++.|..++..+.- ...+-++|..|+||||+|+.+.+.+
T Consensus 15 FddVIGQe~vv~~L~~al~~gRL-pHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQRL-HHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCCC-ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999998875542 3455679999999999999988774
No 97
>CHL00176 ftsH cell division protein; Validated
Probab=95.12 E-value=0.021 Score=53.61 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=35.9
Q ss_pred cCcccccchhHHHHHHHhh---cC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 174 KNQLVGVESRVKEIESLLG---AE-------SKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~---~~-------~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
-.++.|.++.++++.+++. .. ....+-+-++|.+|+|||+||+++.+....
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~ 242 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV 242 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3578888877777766542 11 112345778999999999999999887543
No 98
>PRK08727 hypothetical protein; Validated
Probab=95.12 E-value=0.049 Score=44.61 Aligned_cols=26 Identities=31% Similarity=0.253 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...+.++|..|+|||+|++++.+...
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~ 66 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAE 66 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34589999999999999999987743
No 99
>PLN02348 phosphoribulokinase
Probab=95.10 E-value=0.04 Score=48.48 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=25.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
....+|||.|-.|.||||+|+.+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999988764
No 100
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.07 E-value=0.042 Score=46.47 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=25.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
.++.+++|.|..|.|||||...+.+.+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46889999999999999999998887543
No 101
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.05 E-value=0.066 Score=46.41 Aligned_cols=52 Identities=25% Similarity=0.259 Sum_probs=41.7
Q ss_pred ccCcccccchhHHH---HHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 173 YKNQLVGVESRVKE---IESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 173 ~~~~~~g~~~~~~~---~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
....+||..+..+. +.+++..+.-..+.|-+.|.+|.|||+||-.+.+.+.+
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~ 91 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGE 91 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 35789998765554 46777766666788899999999999999999998764
No 102
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.03 E-value=0.032 Score=53.60 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=40.4
Q ss_pred cCcccccchhHHHHHHHhhc----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 174 KNQLVGVESRVKEIESLLGA----ESKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~----~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
..+..|.+.-++.+.++|.. ......++.++|..|+||||+++.+...+...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~ 376 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK 376 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45788999888888877752 12345689999999999999999998765433
No 103
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.02 E-value=0.038 Score=50.18 Aligned_cols=47 Identities=28% Similarity=0.290 Sum_probs=37.1
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
-.+++|.+.-++.|...+..+.- ...+-++|..|+||||+|+.+...
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri-~ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKI-PQSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC-CceEEEECCCCccHHHHHHHHHHH
Confidence 46789999888888887765432 345668999999999999988765
No 104
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.01 E-value=0.044 Score=47.76 Aligned_cols=53 Identities=25% Similarity=0.263 Sum_probs=37.2
Q ss_pred ccCcccccchhHHHH---HHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 173 YKNQLVGVESRVKEI---ESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~---~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
....+||+....+.. .+++..+.-..+.+-+.|.+|.|||+||-++...+...
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~ 77 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGED 77 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTT
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCC
Confidence 357899987766554 56666554446778899999999999999999987653
No 105
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.00 E-value=0.027 Score=46.19 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.+.+-|+|..|+|||+|++++.+...
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999888643
No 106
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.99 E-value=0.022 Score=50.50 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.-++.|+|+|..|.|||||++++.+..
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 347889999999999999999988763
No 107
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.99 E-value=0.025 Score=40.57 Aligned_cols=23 Identities=35% Similarity=0.322 Sum_probs=19.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~ 219 (227)
....++|.|..|.|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34678999999999999999854
No 108
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.97 E-value=0.041 Score=46.52 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=28.6
Q ss_pred HHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 185 KEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.++...|........+|||.|.+|.||+||..++-..
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~ 74 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRE 74 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHH
Confidence 3455555555667889999999999999999876554
No 109
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.97 E-value=0.052 Score=46.93 Aligned_cols=48 Identities=23% Similarity=0.300 Sum_probs=38.6
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+..++.+...+..+. -...+=++|..|+||||+|+.+...+
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999998886443 23456689999999999999988774
No 110
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.92 E-value=0.039 Score=51.41 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=39.6
Q ss_pred ccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 173 YKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+++|.+.-++.|...+..+. -...+-++|..|+||||+|+.+.+.+
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999887543 23456679999999999999998874
No 111
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.90 E-value=0.043 Score=51.48 Aligned_cols=48 Identities=27% Similarity=0.308 Sum_probs=38.1
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-++.|...+..+.- ...+-++|..|+||||+|+.+.+.+
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl-~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRL-HHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC-CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999888888888875432 3445688999999999999988764
No 112
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.90 E-value=0.048 Score=52.13 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=38.3
Q ss_pred cCcccccchhHHHHHHHhhcC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 174 KNQLVGVESRVKEIESLLGAE-------SKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~-------~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...++|.+..++.+...+... .....++-++|..|+|||+||+.+.+.+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 467889998888887776531 12244677899999999999999988754
No 113
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.03 Score=51.60 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=40.3
Q ss_pred cCcccccchhHHHHHHHhhcC----------CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCC
Q 045657 174 KNQLVGVESRVKEIESLLGAE----------SKYVYTLGIWGFGGIGKTTIARAIFDKISSNF 226 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~----------~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~f 226 (227)
-.++=|.+..+.+|.+++..- -...+=|-++|.+|+|||.||+++.+.++-.|
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF 251 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce
Confidence 356668898888888876531 12345667899999999999999999876654
No 114
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.85 E-value=0.047 Score=51.02 Aligned_cols=48 Identities=25% Similarity=0.369 Sum_probs=37.8
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-++.|..++..+. -...+=++|..|+||||+|+.+.+.+
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678998888888888887543 23456689999999999999987663
No 115
>PLN02200 adenylate kinase family protein
Probab=94.84 E-value=0.034 Score=45.62 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...++.|.|++|.||||+|+.+.+.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999887653
No 116
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.82 E-value=0.057 Score=48.19 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+|.++|..|+||||++..+...+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999876554
No 117
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.028 Score=48.10 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
-|+|-++|.+|.|||+|+++.+..+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 47888999999999999999998743
No 118
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.78 E-value=0.053 Score=51.90 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=39.2
Q ss_pred cCcccccchhHHHHHHHhhcC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 174 KNQLVGVESRVKEIESLLGAE-------SKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~-------~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
...++|.+..++.|...+... ......+-++|..|+|||+||+.+...+..
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~ 514 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI 514 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357899999999888877521 123456778999999999999998887643
No 119
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.76 E-value=0.037 Score=50.90 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=38.1
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...++|....++++.+.+..-...-..|-|+|..|+|||++|+.+|+.
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 467899999899888877643333335669999999999999999986
No 120
>PRK06620 hypothetical protein; Validated
Probab=94.73 E-value=0.023 Score=45.99 Aligned_cols=23 Identities=30% Similarity=0.305 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+.+-|||..|+|||+|++++.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 56889999999999999987765
No 121
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.71 E-value=0.04 Score=47.38 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+++++|.+|+||||++..+...+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999887664
No 122
>PRK14974 cell division protein FtsY; Provisional
Probab=94.70 E-value=0.035 Score=48.05 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...++.++|+.|+||||++..+...+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 367999999999999998888776543
No 123
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.66 E-value=0.037 Score=46.69 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..++++++|.+|+||||++..+...+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999876653
No 124
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.65 E-value=0.054 Score=49.79 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=37.9
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-++.+..++..+.- ...+-++|..|+||||+|+.+...+
T Consensus 15 f~divGq~~v~~~L~~~i~~~~~-~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQRL-HHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC-CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999889888888875432 3445679999999999999988764
No 125
>PRK09087 hypothetical protein; Validated
Probab=94.64 E-value=0.028 Score=45.87 Aligned_cols=25 Identities=28% Similarity=0.161 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-..+.|||..|+|||+|+++..+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999988765
No 126
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.045 Score=45.33 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=34.5
Q ss_pred cccccchhHHHHHHHhhc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 176 QLVGVESRVKEIESLLGA-----------ESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 176 ~~~g~~~~~~~~~~~l~~-----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
++=|.+-+++++.+.... +-+..+-|-++|.+|.|||.||++|.++-.
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~ 214 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 214 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc
Confidence 444677777777665432 113456677899999999999999998733
No 127
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.63 E-value=0.058 Score=50.10 Aligned_cols=48 Identities=27% Similarity=0.262 Sum_probs=38.5
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-++.|..++..+. -...+-++|..|+||||+|+.+.+.+
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999988999998887543 23456689999999999999988764
No 128
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.61 E-value=0.032 Score=49.59 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=34.9
Q ss_pred cCcccccchhHHHHHHHhh-------c---CC--CC----eEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 174 KNQLVGVESRVKEIESLLG-------A---ES--KY----VYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~-------~---~~--~~----~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
...++|.+.-++.+...+. . .. .+ -..+-++|..|+|||+||+.+...+...
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~p 143 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVP 143 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCC
Confidence 3457888877777654331 1 01 11 2457789999999999999998775433
No 129
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.60 E-value=0.067 Score=47.99 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...++.++|..|+||||+|..+...+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367899999999999999999877654
No 130
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.59 E-value=0.037 Score=48.93 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.++++++|.+|+||||++..+...+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH
Confidence 5789999999999999999987654
No 131
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.57 E-value=0.05 Score=50.07 Aligned_cols=46 Identities=26% Similarity=0.486 Sum_probs=35.5
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
-.+++|....++.+...+.... ..-+-|+|..|+|||++|+.+++.
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 3578999988888887664332 223458999999999999999874
No 132
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.55 E-value=0.097 Score=38.66 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=33.9
Q ss_pred CcccccchhHHHHHHHhh----cC-CCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 175 NQLVGVESRVKEIESLLG----AE-SKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~----~~-~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.++.|..--++.+.+.|. .. ....-|++.+|..|+|||-+++.+.+.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 466777666666655553 22 234679999999999999988887666
No 133
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.52 E-value=0.066 Score=43.43 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
....+-|+|-.|+|||.|.+++++.+.
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~ 59 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQ 59 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 355678999999999999999999854
No 134
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.49 E-value=0.069 Score=44.15 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...+-++|-+|+|||+||.++.+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 34677899999999999999988753
No 135
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.49 E-value=0.075 Score=46.43 Aligned_cols=48 Identities=27% Similarity=0.335 Sum_probs=38.6
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+..++.+...+..+. -...+-++|..|+||||+|+.+.+.+
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678899999998988887542 23466789999999999999997775
No 136
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.48 E-value=0.083 Score=46.06 Aligned_cols=51 Identities=24% Similarity=0.201 Sum_probs=40.2
Q ss_pred CCccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 171 RNYKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 171 ~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
|.....++|.+.-.+.+...+..+.- ...+-++|..|+||||+|+.+.+.+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl-~ha~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKL-HHALLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCC-CeeEeeECCCCCCHHHHHHHHHHHH
Confidence 34457899999999999888875532 3356679999999999999988774
No 137
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.44 E-value=0.047 Score=47.48 Aligned_cols=45 Identities=27% Similarity=0.229 Sum_probs=33.3
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..++|.+.-+..|...+... ...-+-|.|-.|+||||+|+.+|+-
T Consensus 17 ~~ivGq~~~k~al~~~~~~p--~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDP--KIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred HHHhChHHHHHHHHHhccCC--CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 67889988777766544322 2333448999999999999999875
No 138
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.41 E-value=0.064 Score=51.79 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=38.4
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-++.|..++..+.- ...+-++|..|+||||+|+.+.+.+
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri-~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRI-NHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCC-CceEEEECCCCCCHHHHHHHHHHHh
Confidence 35788998888889888875432 2455689999999999999998875
No 139
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.39 E-value=0.038 Score=44.80 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3568999999999999999998764
No 140
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.38 E-value=0.066 Score=47.48 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...+-|+|..|+|||+|++++++.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~ 161 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL 161 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 45678999999999999999999854
No 141
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.37 E-value=0.06 Score=51.54 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=36.3
Q ss_pred CcccccchhHHHHHHHhhc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 175 NQLVGVESRVKEIESLLGA-----------ESKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~-----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
.++.|.+.-++.|.+.+.. +-...+-+-++|..|+|||+||+++.+....+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~ 514 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN 514 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 5667888777777665531 11223457789999999999999999875443
No 142
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=94.36 E-value=0.042 Score=46.09 Aligned_cols=28 Identities=25% Similarity=0.568 Sum_probs=24.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcCC
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDKISSNF 226 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~~~~~f 226 (227)
.-++|.|-.|.|||||++.+++.++.+|
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~ 97 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAH 97 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcC
Confidence 4588999999999999999999987665
No 143
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=94.35 E-value=0.034 Score=50.75 Aligned_cols=24 Identities=42% Similarity=0.501 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...++||+|-.|.||||||+.+..
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999998764
No 144
>PHA02244 ATPase-like protein
Probab=94.35 E-value=0.051 Score=47.54 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 200 TLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
-|-|+|..|+|||+||+++...+..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3567899999999999999887543
No 145
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.34 E-value=0.076 Score=49.50 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=38.1
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-++.|..++..+. -...+-++|..|+||||+|+.+.+.+
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999988888888886543 23455689999999999999998774
No 146
>PRK12377 putative replication protein; Provisional
Probab=94.33 E-value=0.056 Score=44.80 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...+-++|..|+|||+||.++.+.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999998854
No 147
>PRK10536 hypothetical protein; Provisional
Probab=94.32 E-value=0.088 Score=43.79 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=32.0
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..+.++......+..+|.. ..++-+.|..|+|||+||.++.-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHH
Confidence 3455666666666766653 238888999999999999997664
No 148
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.30 E-value=0.069 Score=51.95 Aligned_cols=49 Identities=16% Similarity=0.380 Sum_probs=37.3
Q ss_pred cCcccccchhHHHHHHHhhcC-------CCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAE-------SKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~-------~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...++|.+..++.|...+... +....++-++|..|+|||+||+++++.+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 357889998888887766421 1223577899999999999999998764
No 149
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.29 E-value=0.095 Score=45.95 Aligned_cols=50 Identities=20% Similarity=0.135 Sum_probs=39.4
Q ss_pred CccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 172 NYKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 172 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
....+++|.+.-++.+.+.+..+.- ...+-++|..|+||+|+|..+.+.+
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~rl-~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGRL-HHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCCC-CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4457899999888888888875532 3356688999999999999887763
No 150
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.28 E-value=0.057 Score=50.52 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=36.0
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
..+++|.+.-++.+...+..+. -+-++|+.|+||||||+++.+.+..
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~~l~~ 63 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAELLPD 63 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4677898888877777676432 3338999999999999999887543
No 151
>PRK05642 DNA replication initiation factor; Validated
Probab=94.27 E-value=0.049 Score=44.64 Aligned_cols=25 Identities=20% Similarity=0.506 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.+.+-|+|..|+|||.|++++.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~ 69 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF 69 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999998764
No 152
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.24 E-value=0.087 Score=48.81 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=38.3
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-++.+...+..+.. .+..=++|..|+||||+|+.+...+
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~-~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKI-SHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCC-CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999998875442 3444579999999999999987764
No 153
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.23 E-value=0.066 Score=46.14 Aligned_cols=47 Identities=28% Similarity=0.226 Sum_probs=33.1
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
..++|.++.+..+...+..+ +-+-+.|..|+|||+||+.+...+.-.
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~ 70 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLP 70 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCC
Confidence 34788776666665544422 235678999999999999998876543
No 154
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.22 E-value=0.043 Score=44.70 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3558999999999999999998754
No 155
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.18 E-value=0.044 Score=44.56 Aligned_cols=25 Identities=36% Similarity=0.423 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-.+++|+|..|.|||||.+.+..-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999988654
No 156
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=94.17 E-value=0.05 Score=48.36 Aligned_cols=26 Identities=27% Similarity=0.190 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..-+|||.|..|.|||||++.+..-+
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999986544
No 157
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.16 E-value=0.062 Score=49.18 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=39.1
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...++|....++++.+.+..-...-..|-|+|..|+|||++|+++|+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 467899999998888877654334446778999999999999999986
No 158
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.13 E-value=0.08 Score=43.50 Aligned_cols=53 Identities=21% Similarity=0.384 Sum_probs=39.2
Q ss_pred CccCcccccchhHHHHHHHhhc--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 172 NYKNQLVGVESRVKEIESLLGA--ESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 172 ~~~~~~~g~~~~~~~~~~~l~~--~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
.....++|.+.+++.|.+=... .....+=|-+||..|.||+.|.+++++.+..
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~ 111 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD 111 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh
Confidence 4457889999998888652211 1233555678999999999999999998654
No 159
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.12 E-value=0.067 Score=40.74 Aligned_cols=43 Identities=23% Similarity=0.399 Sum_probs=27.4
Q ss_pred ccchhHHHHHHHhhcCC-CCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 179 GVESRVKEIESLLGAES-KYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 179 g~~~~~~~~~~~l~~~~-~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
|.+.-++.+.+++.... .....++++|++|+|||||.+.+..+
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcC
Confidence 44444444444432111 12346789999999999999988764
No 160
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.11 E-value=0.047 Score=44.28 Aligned_cols=25 Identities=24% Similarity=0.120 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999998764
No 161
>PLN02165 adenylate isopentenyltransferase
Probab=94.09 E-value=0.05 Score=46.91 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..++.|+|+.|.||||||..+...+
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHc
Confidence 4489999999999999999988774
No 162
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.08 E-value=0.048 Score=43.95 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+...
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999998754
No 163
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.06 E-value=0.09 Score=47.87 Aligned_cols=48 Identities=25% Similarity=0.288 Sum_probs=38.2
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-+..+..++..+. -....-++|..|+||||+|+.+...+
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678899999999988887543 23445579999999999999988764
No 164
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=94.06 E-value=0.08 Score=46.39 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
...+++|+|..|.|||||+..+...+..
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~ 231 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIA 231 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999888654
No 165
>PRK08116 hypothetical protein; Validated
Probab=94.06 E-value=0.053 Score=45.44 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=21.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..+-++|-.|+|||.||.++++.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~ 139 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI 139 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3577899999999999999999854
No 166
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.03 E-value=0.048 Score=44.08 Aligned_cols=25 Identities=48% Similarity=0.577 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999987654
No 167
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.00 E-value=0.065 Score=44.65 Aligned_cols=51 Identities=20% Similarity=0.267 Sum_probs=37.9
Q ss_pred cCcccccchhHHHH---HHHhhc----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 174 KNQLVGVESRVKEI---ESLLGA----ESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 174 ~~~~~g~~~~~~~~---~~~l~~----~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
-.+++|.+..+++- .+.|.. +.+..+-|-.+|..|.|||.+|+++.+..+.
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv 177 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV 177 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC
Confidence 36788988766653 444542 3466777888999999999999999887443
No 168
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=94.00 E-value=0.05 Score=45.06 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||++.+...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4558999999999999999988764
No 169
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.98 E-value=0.042 Score=43.12 Aligned_cols=26 Identities=38% Similarity=0.478 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...|+||+|..|.|||||.+.+-.++
T Consensus 31 PGeVLgiVGESGSGKtTLL~~is~rl 56 (258)
T COG4107 31 PGEVLGIVGESGSGKTTLLKCISGRL 56 (258)
T ss_pred CCcEEEEEecCCCcHHhHHHHHhccc
Confidence 45689999999999999999887653
No 170
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=93.97 E-value=0.046 Score=49.31 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=19.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHH
Q 045657 196 KYVYTLGIWGFGGIGKTTIARA 217 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~ 217 (227)
....+++|+|..|.|||||.+.
T Consensus 30 ~~GEiv~L~G~SGsGKSTLLr~ 51 (504)
T TIGR03238 30 PSSSLLFLCGSSGDGKSEILAE 51 (504)
T ss_pred cCCCEEEEECCCCCCHHHHHhc
Confidence 4567999999999999999883
No 171
>PRK09183 transposase/IS protein; Provisional
Probab=93.94 E-value=0.053 Score=45.19 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=19.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..+.|+|..|+|||+||.++.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 45779999999999999998665
No 172
>COG4240 Predicted kinase [General function prediction only]
Probab=93.90 E-value=0.059 Score=43.96 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
..-++||.|..|.||||++-.+++.+..
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~ 76 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAA 76 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHH
Confidence 3568999999999999999999987543
No 173
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.89 E-value=0.1 Score=46.75 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.+++.++|.+|+||||++..+...+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988775543
No 174
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.89 E-value=0.055 Score=44.66 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999987654
No 175
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=93.87 E-value=0.064 Score=45.59 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.-+|.|.|..|+||||+|+.+.+++.
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l~ 117 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRLG 117 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998753
No 176
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=93.86 E-value=0.051 Score=46.85 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+++|+|..|.|||||++.+..-+
T Consensus 32 ~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 32 QGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 35689999999999999999987643
No 177
>PRK06526 transposase; Provisional
Probab=93.85 E-value=0.059 Score=44.81 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=20.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-+-++|.+|+|||+||.++...
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 45789999999999999998766
No 178
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.82 E-value=0.099 Score=47.08 Aligned_cols=27 Identities=37% Similarity=0.367 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
.+.+-|+|..|+|||+|++++.+.+..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~ 174 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILE 174 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 466889999999999999999988643
No 179
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.80 E-value=0.11 Score=48.77 Aligned_cols=48 Identities=25% Similarity=0.273 Sum_probs=37.8
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-+..|..++..+.- ...+=++|..|+||||+|+.+.+.+
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl-~~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRI-APAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCC-CceEEEECCCCCChHHHHHHHHHHh
Confidence 46788998888888888875432 2345578999999999999998874
No 180
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=93.80 E-value=0.058 Score=43.60 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999988754
No 181
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.77 E-value=0.14 Score=44.11 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=30.4
Q ss_pred cccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 176 QLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 176 ~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
..+=..+-...+...+..+ +-|-|.|..|+||||+|+.+...+.-
T Consensus 46 ~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~ 90 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNW 90 (327)
T ss_pred CccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCC
Confidence 3333334445555555432 34788999999999999999887543
No 182
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=93.76 E-value=0.06 Score=44.42 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3558999999999999999998753
No 183
>PRK10867 signal recognition particle protein; Provisional
Probab=93.74 E-value=0.12 Score=46.39 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...++.++|.+|+||||++..+...+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 36799999999999999888776553
No 184
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.72 E-value=0.061 Score=43.23 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..+++|.|..|.|||||.+.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999988654
No 185
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.71 E-value=0.062 Score=42.47 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
.-.+++|.|..|.|||||.+.+..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999875
No 186
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.71 E-value=0.054 Score=45.10 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||++.+..-
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3568999999999999999987653
No 187
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.70 E-value=0.064 Score=50.39 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..-++.-++|.+|+||||||.-|.++
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq 349 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ 349 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh
Confidence 45678999999999999999988776
No 188
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=93.70 E-value=0.059 Score=46.50 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||++.+..-
T Consensus 32 ~Ge~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 32 EGEIRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcc
Confidence 3557999999999999999998764
No 189
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.67 E-value=0.062 Score=44.68 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3558999999999999999988754
No 190
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.67 E-value=0.066 Score=41.33 Aligned_cols=25 Identities=32% Similarity=0.252 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-.+++|.|..|.|||||++.+...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998764
No 191
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.67 E-value=0.064 Score=45.67 Aligned_cols=25 Identities=40% Similarity=0.486 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...++||+|..|.||||+++++..-
T Consensus 30 ~GE~lgiVGESGsGKS~~~~aim~l 54 (316)
T COG0444 30 KGEILGIVGESGSGKSVLAKAIMGL 54 (316)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHhc
Confidence 4568999999999999999998764
No 192
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=93.66 E-value=2.4 Score=35.50 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...++++|++|+|||||.+.+.+.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~ 141 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGK 141 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999987653
No 193
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.66 E-value=0.063 Score=43.90 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||++.+..-
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999988753
No 194
>PLN02199 shikimate kinase
Probab=93.65 E-value=0.067 Score=45.38 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.+.|.++||.|.||||+++.+.+.+.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg 127 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLG 127 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34678899999999999999988653
No 195
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.64 E-value=0.11 Score=48.06 Aligned_cols=48 Identities=25% Similarity=0.275 Sum_probs=39.2
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-++.|...+..+. -...+-++|..|+||||+|+.+.+.+
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678999999999999887543 24556789999999999999998874
No 196
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.64 E-value=0.073 Score=50.53 Aligned_cols=47 Identities=26% Similarity=0.299 Sum_probs=36.4
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..++|....++.+.+.+..-...-..|-|.|..|+|||++|+++|+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 46899988888887666532223345778999999999999999985
No 197
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.62 E-value=0.068 Score=40.30 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-.+++|.|..|.|||||.+.+..-
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3568999999999999999987653
No 198
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=93.61 E-value=0.066 Score=44.77 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+++|+|..|.|||||++.+..-+
T Consensus 49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 49 ENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35689999999999999999987643
No 199
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.60 E-value=0.067 Score=44.60 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|.|..|.|||||.+.+..
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999875
No 200
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.56 E-value=0.14 Score=46.25 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=38.4
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-+..+...+..+.- ...+-++|..|+||||+|+.+.+.+
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i-~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRA-AHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC-ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999988888875432 3456679999999999999988774
No 201
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.56 E-value=0.072 Score=40.99 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-.+++|.|..|.|||||.+.+...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999988754
No 202
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.56 E-value=0.068 Score=44.31 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+++|.|..|.|||||++.+...+
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35589999999999999999987643
No 203
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.55 E-value=0.072 Score=46.75 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..++.++|..|+||||++.++...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999998766
No 204
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=93.52 E-value=0.068 Score=44.27 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||++.+..-
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4558999999999999999998764
No 205
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=93.50 E-value=0.063 Score=46.36 Aligned_cols=25 Identities=40% Similarity=0.387 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||++.+..-
T Consensus 41 ~Ge~~~ivG~sGsGKSTL~~~l~Gl 65 (330)
T PRK09473 41 AGETLGIVGESGSGKSQTAFALMGL 65 (330)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 3568999999999999999998754
No 206
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=93.49 E-value=0.068 Score=46.12 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||++.+..-
T Consensus 40 ~Ge~~~IvG~sGsGKSTLl~~l~gl 64 (327)
T PRK11308 40 RGKTLAVVGESGCGKSTLARLLTMI 64 (327)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Confidence 3468999999999999999998764
No 207
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=93.49 E-value=0.07 Score=44.43 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 35 KNQITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999875
No 208
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.48 E-value=0.11 Score=47.63 Aligned_cols=47 Identities=28% Similarity=0.320 Sum_probs=35.4
Q ss_pred cccccchhHHHHHHHhhc---CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 176 QLVGVESRVKEIESLLGA---ESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 176 ~~~g~~~~~~~~~~~l~~---~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
++.--.+-+++|..||.. +....+++-+.|.+|+||||..+.+.+.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 334344567888888864 23346789999999999999999998874
No 209
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.47 E-value=0.068 Score=45.13 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998654
No 210
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=93.47 E-value=0.07 Score=44.27 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3568999999999999999998754
No 211
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=93.46 E-value=0.088 Score=41.40 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=28.1
Q ss_pred cccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 178 VGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 178 ~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.|.++-++.+.+.+. ....+.++|+.|+|||||.+.+.+.
T Consensus 111 ~gi~eL~~~l~~~l~----~~~~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 111 WGVEELINAIKKLAK----KGGDVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred CCHHHHHHHHHHHhh----cCCcEEEEcCCCCCHHHHHHHHHHh
Confidence 355554555555443 2246889999999999999998875
No 212
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=93.46 E-value=0.069 Score=43.95 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999864
No 213
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.46 E-value=0.067 Score=44.05 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||++.+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 32 KGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcC
Confidence 456899999999999999998765
No 214
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.45 E-value=0.068 Score=44.87 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 32 DGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999988654
No 215
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.43 E-value=0.071 Score=44.53 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999988654
No 216
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.076 Score=45.23 Aligned_cols=30 Identities=37% Similarity=0.470 Sum_probs=25.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCC
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKISSNF 226 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~~~f 226 (227)
....++|||..|.|||-||++|+..+.-+|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 345789999999999999999999876655
No 217
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=93.40 E-value=0.099 Score=44.68 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=23.8
Q ss_pred hcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 192 GAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 192 ~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+.....|.++|.+|+|||++.+.+..+
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~ 61 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGE 61 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCC
Confidence 444444556789999999999999998865
No 218
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.11 Score=45.58 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=34.5
Q ss_pred CcccccchhHHHHHHHhhc----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 175 NQLVGVESRVKEIESLLGA----------ESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.++.|.++.++-|.+.... -....+-|-.+|.+|.|||.||++|+-.-+
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 4666776666666554321 123466777889999999999999997643
No 219
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.38 E-value=0.071 Score=44.51 Aligned_cols=25 Identities=40% Similarity=0.381 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999988754
No 220
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.38 E-value=0.073 Score=43.18 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-.+++|.|..|.|||||.+.+..-
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999988753
No 221
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.36 E-value=0.081 Score=40.95 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999998764
No 222
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.36 E-value=0.073 Score=42.47 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-.+++|+|..|.|||||.+.+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 4568999999999999999987654
No 223
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=93.35 E-value=0.073 Score=44.51 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999988654
No 224
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.34 E-value=0.075 Score=44.41 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-.+++|+|..|.|||||.+.+...
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999998754
No 225
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.33 E-value=0.073 Score=42.20 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.+...|+|+|.+|+|||||.+.+.+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcc
Confidence 34668999999999999999988765
No 226
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.29 E-value=0.081 Score=43.86 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 32 RNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999998764
No 227
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=93.27 E-value=0.082 Score=44.09 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.-.+++|+|..|.|||||.+.+...+
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 35689999999999999999987653
No 228
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.27 E-value=0.079 Score=43.65 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999864
No 229
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.25 E-value=0.14 Score=48.67 Aligned_cols=48 Identities=19% Similarity=0.347 Sum_probs=37.8
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-++.|...+..+. -....=++|..|+||||+|+.+...+
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4678899988988988887543 23445578999999999999987763
No 230
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.25 E-value=0.079 Score=43.71 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|.|..|.|||||++.+..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999874
No 231
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.24 E-value=0.13 Score=37.83 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+|.+.|-=|.||||++|.+...+
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998874
No 232
>PF13245 AAA_19: Part of AAA domain
Probab=93.24 E-value=0.1 Score=34.95 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=16.0
Q ss_pred EEEEEEcCCCchHH-HHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKT-TIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKT-tla~~v~~~ 221 (227)
.+.-|.|.+|.||| |+++.+.+-
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 35667899999999 455444443
No 233
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.23 E-value=0.081 Score=43.66 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999998764
No 234
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.21 E-value=0.095 Score=48.13 Aligned_cols=47 Identities=23% Similarity=0.222 Sum_probs=34.8
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.+++|....++++.+.+..-...-..|-|+|-.|+||++||+++|..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 57889888777777666432212234669999999999999999875
No 235
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.21 E-value=0.088 Score=42.65 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-.+++|+|..|.|||||++.+...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCc
Confidence 4568999999999999999988654
No 236
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.19 E-value=0.084 Score=42.46 Aligned_cols=25 Identities=32% Similarity=0.274 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+...
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4558999999999999999998754
No 237
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=93.19 E-value=0.087 Score=43.93 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.-.+++|.|..|.|||||.+.+..-+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999999999999987653
No 238
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.19 E-value=0.085 Score=42.68 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998764
No 239
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.18 E-value=0.081 Score=44.22 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999988764
No 240
>PRK06921 hypothetical protein; Provisional
Probab=93.15 E-value=0.092 Score=43.95 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..-+-++|..|+|||.||.++.+.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 45688999999999999999998753
No 241
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.13 E-value=0.089 Score=41.98 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999998654
No 242
>PRK10646 ADP-binding protein; Provisional
Probab=93.10 E-value=0.18 Score=38.57 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=28.7
Q ss_pred hhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 182 SRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
++..++-+.|...-....+|.+.|-=|.||||++|.+.+.+
T Consensus 12 ~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 12 QATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34444544443222334589999999999999999998874
No 243
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=93.09 E-value=0.12 Score=42.80 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=24.1
Q ss_pred hhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 191 LGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 191 l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+.......-.|.++|..|+|||||.+.+++.
T Consensus 24 ~~~~~~~~~~IllvG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 24 GKEELDFSLTILVLGKTGVGKSSTINSIFGE 54 (249)
T ss_pred hhhhccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 3333344567888999999999999999875
No 244
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.06 E-value=0.088 Score=44.34 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-.+++|+|..|.|||||.+.+..-
T Consensus 32 ~Ge~~~I~G~nGaGKSTLl~~l~G~ 56 (282)
T PRK13640 32 RGSWTALIGHNGSGKSTISKLINGL 56 (282)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcc
Confidence 3458999999999999999998764
No 245
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.06 E-value=0.088 Score=44.13 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 45 ~Ge~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 45 AKKIIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 355899999999999999999874
No 246
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.05 E-value=0.15 Score=49.77 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=38.3
Q ss_pred cCcccccchhHHHHHHHhhcCC-------CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAES-------KYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~-------~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...++|.+..++.+...+.... ....++-+.|..|+|||++|+.+...+
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999888775321 224567789999999999999998764
No 247
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=93.05 E-value=0.097 Score=45.14 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+.|.|..|.|||||++.+.+.+
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~ 186 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVF 186 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3478999999999999999987653
No 248
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.03 E-value=0.092 Score=43.27 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..+++|.|..|.|||||++.+..-
T Consensus 31 Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 31 REVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999998754
No 249
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=93.03 E-value=0.088 Score=45.51 Aligned_cols=25 Identities=48% Similarity=0.545 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||++.+..-
T Consensus 46 ~Ge~~~lvG~sGsGKSTLlk~i~Gl 70 (331)
T PRK15079 46 EGETLGVVGESGCGKSTFARAIIGL 70 (331)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4568999999999999999998753
No 250
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.01 E-value=0.1 Score=49.03 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=34.7
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..++|....+.++.+.+..-...-..|-|+|..|+||+++|+++|+.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 45778777777776666532222334679999999999999999986
No 251
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=92.98 E-value=0.11 Score=47.66 Aligned_cols=47 Identities=26% Similarity=0.396 Sum_probs=36.9
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.+++|....++.+.+.+..-...-..|-|.|..|+||+++|+.+|+.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 45899988888888877533323346778999999999999999975
No 252
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.98 E-value=0.1 Score=47.36 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+++++|..|+||||++..+...+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4799999999999999999987653
No 253
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=92.93 E-value=0.091 Score=42.85 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 30 QGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcC
Confidence 455899999999999999998764
No 254
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=92.92 E-value=0.12 Score=47.57 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=37.1
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.+++|....++++.+.+..-...-..|-|.|..|+||+++|+.+|+.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 45899988888888877543323346778999999999999999986
No 255
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.92 E-value=0.11 Score=46.21 Aligned_cols=24 Identities=29% Similarity=0.169 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..++.++|.+|+||||++..+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988654
No 256
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=92.89 E-value=0.093 Score=45.55 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLL 54 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3458999999999999999987654
No 257
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=92.89 E-value=0.094 Score=45.58 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 30 ~Gei~gIiG~sGaGKSTLlr~I~gl 54 (343)
T TIGR02314 30 AGQIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999988653
No 258
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.87 E-value=0.098 Score=43.92 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-.+++|+|..|.|||||.+.+..-
T Consensus 46 ~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 46 ARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999998754
No 259
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.85 E-value=0.096 Score=43.73 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+...
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3558999999999999999998764
No 260
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.85 E-value=0.12 Score=42.37 Aligned_cols=48 Identities=25% Similarity=0.274 Sum_probs=34.1
Q ss_pred ccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 173 YKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+.||.++-++.|.-....+ +..-+-|-||+|+||||-+....+.+
T Consensus 25 ~l~dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHHHH
Confidence 3467889888777766554443 33334577999999999888777763
No 261
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.82 E-value=0.1 Score=43.92 Aligned_cols=25 Identities=36% Similarity=0.287 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998754
No 262
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.81 E-value=0.11 Score=42.43 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=19.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~ 219 (227)
....++|+|..|.|||||...+.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 44589999999999999998764
No 263
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.81 E-value=0.1 Score=43.59 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4558999999999999999998754
No 264
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.79 E-value=0.11 Score=46.83 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.+.+-|+|..|+|||+|++++.+.+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~ 166 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR 166 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46678999999999999999998753
No 265
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=92.78 E-value=0.1 Score=43.63 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||++.+...
T Consensus 50 ~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 50 KNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3568999999999999999998654
No 266
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.75 E-value=0.13 Score=40.42 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-+-++|..|+|||.||.++.+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~ 70 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANE 70 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHH
Confidence 45788999999999999998876
No 267
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=92.74 E-value=0.1 Score=43.44 Aligned_cols=25 Identities=36% Similarity=0.520 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 36 EGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999987654
No 268
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.72 E-value=0.23 Score=48.19 Aligned_cols=49 Identities=16% Similarity=0.352 Sum_probs=37.1
Q ss_pred cCcccccchhHHHHHHHhhcC-------CCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAE-------SKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~-------~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...++|.+.-++.+...+... +......-++|..|+|||+||+.+.+.+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 467899999999987766421 1223455689999999999999988764
No 269
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.71 E-value=0.21 Score=45.93 Aligned_cols=48 Identities=27% Similarity=0.322 Sum_probs=38.3
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-++.|...+..+. -....=++|..|+||||+|+.+.+.+
T Consensus 13 fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 4678999888888888886543 23455689999999999999988774
No 270
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=0.18 Score=48.20 Aligned_cols=72 Identities=19% Similarity=0.353 Sum_probs=47.4
Q ss_pred HhhhcCCcccccccccc--C---CCCccCcccccchhHHHHHHHhhcCC-------CCeEEEEEEcCCCchHHHHHHHHH
Q 045657 152 AASFSGFDSQNFRLAEM--S---PRNYKNQLVGVESRVKEIESLLGAES-------KYVYTLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 152 i~~~~g~~~~~~~e~~~--l---~~~~~~~~~g~~~~~~~~~~~l~~~~-------~~~~~~~i~G~gG~GKTtla~~v~ 219 (227)
++.+.|.+.....+.+. + .-.....++|.+..+..+.+.+.... ....+--..|..|+|||.||+++.
T Consensus 463 v~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA 542 (786)
T COG0542 463 VARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALA 542 (786)
T ss_pred HHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHH
Confidence 44556665554433222 1 22234789999999999888775322 234455557999999999999988
Q ss_pred HHhh
Q 045657 220 DKIS 223 (227)
Q Consensus 220 ~~~~ 223 (227)
+.+-
T Consensus 543 ~~Lf 546 (786)
T COG0542 543 EALF 546 (786)
T ss_pred HHhc
Confidence 7643
No 271
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.70 E-value=0.2 Score=44.04 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=29.4
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..++.++|..+=....++-|.|.+|+|||||+.++...+
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~ 106 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL 106 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 445556665444456789999999999999999887653
No 272
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.68 E-value=0.1 Score=43.72 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-.+++|.|..|.|||||.+.+..-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 30 EGSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3458999999999999999988654
No 273
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=92.66 E-value=0.098 Score=43.54 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 32 DGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3568999999999999999988764
No 274
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.65 E-value=0.11 Score=43.89 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||++.+...
T Consensus 62 ~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 62 KGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998764
No 275
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.65 E-value=0.21 Score=46.51 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=37.9
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-++.|...+..+. -...+-++|..|+||||+|+.+.+.+
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678999988888888887543 23445678999999999999988774
No 276
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=92.62 E-value=0.12 Score=46.43 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+|-+.|.+|+||||+|.++.+++
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~l 279 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRL 279 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999998874
No 277
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.60 E-value=0.12 Score=39.28 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
-.+++|.|..|.|||||.+.+...
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~ 48 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGL 48 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998764
No 278
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=92.60 E-value=0.12 Score=47.33 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+|+|.|..|.||||+|+.+.+.+
T Consensus 284 ~~ii~i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 284 QPIIAIDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998875
No 279
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.59 E-value=0.11 Score=43.08 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (261)
T PRK14258 32 QSKVTAIIGPSGCGKSTFLKCLNRM 56 (261)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999998764
No 280
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.59 E-value=0.11 Score=43.84 Aligned_cols=25 Identities=40% Similarity=0.457 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 64 ~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 64 SKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999998753
No 281
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.59 E-value=0.12 Score=46.06 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++++|..|+||||+.+.+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999977554
No 282
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.58 E-value=0.096 Score=48.41 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=22.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhcCC
Q 045657 200 TLGIWGFGGIGKTTIARAIFDKISSNF 226 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~~~~~f 226 (227)
=|-+||.+|+|||-||++|.|.-+-+|
T Consensus 547 GvLL~GPPGCGKTLlAKAVANEag~NF 573 (802)
T KOG0733|consen 547 GVLLCGPPGCGKTLLAKAVANEAGANF 573 (802)
T ss_pred ceEEeCCCCccHHHHHHHHhhhccCce
Confidence 355799999999999999999866655
No 283
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=92.58 E-value=0.15 Score=45.91 Aligned_cols=47 Identities=21% Similarity=0.391 Sum_probs=36.0
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..++|....+..+...+..-...-..+-|.|-.|+|||++|+.+++.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 46888887777777766543333445779999999999999999886
No 284
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=92.58 E-value=0.11 Score=43.38 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||++.+..-
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999988653
No 285
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.56 E-value=0.11 Score=43.11 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+...
T Consensus 41 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 41 EKQVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999998754
No 286
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=92.55 E-value=0.11 Score=43.24 Aligned_cols=25 Identities=36% Similarity=0.396 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-.+++|+|..|.|||||.+.+..-
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3558999999999999999988654
No 287
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.53 E-value=0.24 Score=48.27 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=38.0
Q ss_pred cCcccccchhHHHHHHHhhc-------CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGA-------ESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~-------~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...++|.+..++.+.+.+.. ......++-++|..|+|||.||+++.+.+
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 36889999999988877642 12234567789999999999999887764
No 288
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.53 E-value=0.14 Score=45.16 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.+++.++|..|+||||.+..+...+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999887664
No 289
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.52 E-value=0.12 Score=42.91 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 37 KNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998753
No 290
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.52 E-value=0.12 Score=46.41 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...+-|+|..|+|||+|++++.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~ 155 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH
Confidence 45688999999999999999999854
No 291
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=0.14 Score=46.74 Aligned_cols=49 Identities=29% Similarity=0.369 Sum_probs=33.1
Q ss_pred cCcccccchhHHHHH---HHhhcCC-------CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIE---SLLGAES-------KYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~---~~l~~~~-------~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.++-|.++.+.+|+ +.|.... .=.+=|-++|.+|.|||-|||+|...-
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 466778877555554 4554221 113445678999999999999998763
No 292
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.51 E-value=0.12 Score=43.70 Aligned_cols=25 Identities=28% Similarity=0.217 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3558999999999999999998754
No 293
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=92.50 E-value=0.53 Score=31.95 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=47.9
Q ss_pred EEEccccccCCccHHHHHHHHHhhCCCeeEEeCCCC-CCCcchHHHHHHHHhcccEEEEeecCcccc
Q 045657 19 VFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDDQLN-RGDEISQSLVYAIENSAISLIIFSEGYASS 84 (227)
Q Consensus 19 vFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~~~~-~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S 84 (227)
||||=.-.|... .-+.|...+.+.|..+..-+.+. .+....+.+.+.|.+|++.|.++...|-..
T Consensus 2 VFiSSt~~Dl~~-eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~ 67 (83)
T PF13271_consen 2 VFISSTFRDLKE-ERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSV 67 (83)
T ss_pred EEEecChhhHHH-HHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence 899977777543 56788888888887754433121 245555788899999999999999998543
No 294
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.47 E-value=0.16 Score=44.76 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+++.++|..|+||||++..+...+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999876553
No 295
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.47 E-value=0.12 Score=47.27 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..+++++|.+|+||||++..+...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999887654
No 296
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.46 E-value=0.12 Score=43.94 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 045657 200 TLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.+-|.|..|.||||+++++.+.+.
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhh
Confidence 456999999999999999987753
No 297
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.45 E-value=0.12 Score=41.03 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-.+++|.|..|.|||||.+.+..-
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4458999999999999999987654
No 298
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.39 E-value=0.14 Score=44.31 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.-+-++|..|+|||.||.++.+.+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH
Confidence 568899999999999999998874
No 299
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=92.30 E-value=0.094 Score=47.43 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.|--|+||-.|+|||||.|++.+.
T Consensus 106 GrRYGLvGrNG~GKsTLLRaia~~ 129 (582)
T KOG0062|consen 106 GRRYGLVGRNGIGKSTLLRAIANG 129 (582)
T ss_pred ccccceeCCCCCcHHHHHHHHHhc
Confidence 456799999999999999999883
No 300
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.29 E-value=0.13 Score=43.36 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 31 KGEVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3558999999999999999998754
No 301
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.29 E-value=0.25 Score=44.58 Aligned_cols=41 Identities=27% Similarity=0.266 Sum_probs=31.0
Q ss_pred hhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 182 SRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.....+..+|..+=....++-|.|.+|+|||||+..+...+
T Consensus 78 TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~ 118 (454)
T TIGR00416 78 SGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQL 118 (454)
T ss_pred cCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34556666676555567788999999999999999886553
No 302
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.28 E-value=0.29 Score=43.79 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..++.++|.+|+||||+|..+...+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 5789999999999999988776553
No 303
>CHL00195 ycf46 Ycf46; Provisional
Probab=92.28 E-value=0.23 Score=45.30 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=32.8
Q ss_pred CcccccchhHHHHHHHhh---c-----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 175 NQLVGVESRVKEIESLLG---A-----ESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~---~-----~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
.++-|.+.-++.+..... . +-...+-+-++|..|+|||.+|+++.+...-
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~ 285 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL 285 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 466677665555543211 0 1123455778999999999999999887543
No 304
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=92.25 E-value=0.13 Score=43.92 Aligned_cols=25 Identities=28% Similarity=0.205 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||++.+..-
T Consensus 32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 32 QGEFIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3558999999999999999987653
No 305
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.23 E-value=0.13 Score=43.39 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl 56 (287)
T PRK13637 32 DGEFVGLIGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3558999999999999999998754
No 306
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.23 E-value=0.13 Score=44.75 Aligned_cols=24 Identities=33% Similarity=0.327 Sum_probs=20.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
....+.+.|..|+|||||.|.+..
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 345789999999999999998753
No 307
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.20 E-value=0.13 Score=43.33 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 64 ~Ge~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 64 ENQVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999998754
No 308
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.18 E-value=0.13 Score=43.31 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-.+++|.|..|.|||||.+.+..-
T Consensus 32 ~Ge~~~iiG~NGaGKSTLl~~l~Gl 56 (287)
T PRK13641 32 EGSFVALVGHTGSGKSTLMQHFNAL 56 (287)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998754
No 309
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.18 E-value=0.17 Score=42.89 Aligned_cols=49 Identities=29% Similarity=0.407 Sum_probs=33.3
Q ss_pred cccccchhHHHHHHHhhc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 176 QLVGVESRVKEIESLLGA-----------ESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 176 ~~~g~~~~~~~~~~~l~~-----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
+.=|-+++.+++.+.... +-....=|-++|.+|.|||-||++|.|.-+.
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSA 245 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSA 245 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccch
Confidence 344567777777665432 1123344557999999999999999997433
No 310
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.17 E-value=0.23 Score=46.16 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=35.9
Q ss_pred CcccccchhHHHHHHHhh-----------cCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCC
Q 045657 175 NQLVGVESRVKEIESLLG-----------AESKYVYTLGIWGFGGIGKTTIARAIFDKISSNF 226 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~-----------~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~f 226 (227)
.+.=|.++-++++...+. .+-...+=|=.+|.+|.|||++|+++.+.-+-+|
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nF 496 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNF 496 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCe
Confidence 344457777777765543 1223445566799999999999999999855544
No 311
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=92.14 E-value=0.18 Score=42.59 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+++|...|.. ..+++.|..|+|||||.+.+...
T Consensus 152 i~~L~~~L~~-----k~~~~~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 152 LDELREYLKG-----KTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred HHHHHhhhcc-----ceEEEECCCCCCHHHHHHHHhch
Confidence 4555555642 57899999999999999987664
No 312
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.12 E-value=0.3 Score=42.00 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=27.8
Q ss_pred HHHHHHHhh-cCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 184 VKEIESLLG-AESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 184 ~~~~~~~l~-~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...|..+|. .+=...+++-|+|..|+||||||-.+...
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~ 78 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAE 78 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555564 34455789999999999999999876554
No 313
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.12 E-value=0.14 Score=43.26 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 3458999999999999999998754
No 314
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.11 E-value=0.14 Score=44.08 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 51 ~Ge~~~I~G~nGsGKSTLl~~L~Gl 75 (320)
T PRK13631 51 KNKIYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998754
No 315
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.11 E-value=0.14 Score=43.68 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+...
T Consensus 70 ~Ge~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 70 EKSVTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999998764
No 316
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=92.07 E-value=0.15 Score=41.15 Aligned_cols=24 Identities=29% Similarity=0.138 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..+++|.|..|.|||||.+.+..-
T Consensus 31 G~~~~I~G~nGsGKStLl~~l~G~ 54 (220)
T TIGR02982 31 GEIVILTGPSGSGKTTLLTLIGGL 54 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999987653
No 317
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.07 E-value=0.14 Score=43.02 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+...
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~i~G~ 56 (279)
T PRK13635 32 EGEWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3457999999999999999998754
No 318
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=92.05 E-value=0.13 Score=48.29 Aligned_cols=25 Identities=36% Similarity=0.319 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||++.+..-
T Consensus 41 ~Ge~~~lvG~nGsGKSTLl~~l~Gl 65 (623)
T PRK10261 41 RGETLAIVGESGSGKSVTALALMRL 65 (623)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4568999999999999999998764
No 319
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=92.04 E-value=0.22 Score=41.08 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
++++.+.|.. ..+.+.|+.|+|||||.+++..+
T Consensus 111 i~eLf~~l~~-----~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 111 LKELIEALQN-----RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred HHHHHhhhcC-----CEEEEECCCCCCHHHHHHHHhhh
Confidence 5555555542 36789999999999999998775
No 320
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=91.95 E-value=0.23 Score=46.67 Aligned_cols=47 Identities=23% Similarity=0.358 Sum_probs=37.0
Q ss_pred CccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 172 NYKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 172 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..-.+++|.+..+..|...+..+ +-+-++|..|+||||+|+.+.+.+
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l 74 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELL 74 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHc
Confidence 34567889888888887767643 357789999999999999987764
No 321
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.91 E-value=0.19 Score=41.80 Aligned_cols=38 Identities=32% Similarity=0.393 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 185 KEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
+.+.++|...-.....+-|.|..|.||||+.+++.+.+
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHHHHHhhhc
Confidence 44455554322235678899999999999999988764
No 322
>PRK08181 transposase; Validated
Probab=91.88 E-value=0.17 Score=42.52 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.-+-++|..|+|||.||.++.+..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH
Confidence 347899999999999999988763
No 323
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=91.87 E-value=0.14 Score=45.86 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...++|+.|..|+||||+++.+..-+
T Consensus 366 ~gEvigilGpNgiGKTTFvk~LAG~i 391 (591)
T COG1245 366 DGEVIGILGPNGIGKTTFVKLLAGVI 391 (591)
T ss_pred cceEEEEECCCCcchHHHHHHHhccc
Confidence 46799999999999999999877543
No 324
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=91.86 E-value=0.14 Score=47.01 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||++.+..-
T Consensus 34 ~Ge~~~iiG~nGsGKSTLl~~i~G~ 58 (529)
T PRK15134 34 AGETLALVGESGSGKSVTALSILRL 58 (529)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4568999999999999999988654
No 325
>PTZ00035 Rad51 protein; Provisional
Probab=91.86 E-value=0.25 Score=42.81 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=28.6
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...|.++|..+=....++-|+|..|.|||||+..+.-
T Consensus 104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~ 140 (337)
T PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCV 140 (337)
T ss_pred cHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHH
Confidence 4455666665555678999999999999999987653
No 326
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=91.85 E-value=0.16 Score=40.25 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999987653
No 327
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=91.80 E-value=0.31 Score=44.00 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.+.+-|+|-.|+|||+|++++.+.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~ 166 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIE 166 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHH
Confidence 45678999999999999999988643
No 328
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.76 E-value=0.16 Score=42.17 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (261)
T PRK14263 33 KNEITGFIGPSGCGKSTVLRSLNRM 57 (261)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcc
Confidence 4568999999999999999988653
No 329
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=0.22 Score=47.36 Aligned_cols=49 Identities=27% Similarity=0.324 Sum_probs=35.1
Q ss_pred cCcccccchhHHHHHHH---hhc-------CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESL---LGA-------ESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~---l~~-------~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.++.|.++-+++|.+. |.. +..-.+=+=++|.+|+|||-||++++..-
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA 368 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 368 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc
Confidence 36788988777766654 432 12234556688999999999999998763
No 330
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.71 E-value=0.22 Score=32.01 Aligned_cols=20 Identities=40% Similarity=0.363 Sum_probs=17.6
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 045657 200 TLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~ 219 (227)
+..|.|..|.|||||.-++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68889999999999998754
No 331
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=91.68 E-value=0.14 Score=48.66 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHH
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
..-..++|+|-.|.|||||+|.+-.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999998654
No 332
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=91.67 E-value=0.16 Score=42.63 Aligned_cols=25 Identities=36% Similarity=0.287 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 35 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 59 (280)
T PRK13633 35 KGEFLVILGRNGSGKSTIAKHMNAL 59 (280)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3558999999999999999998654
No 333
>PRK00098 GTPase RsgA; Reviewed
Probab=91.64 E-value=0.21 Score=42.50 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+++|...|. -.+++++|.+|+|||||.+.+...
T Consensus 155 i~~L~~~l~-----gk~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 155 LDELKPLLA-----GKVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred HHHHHhhcc-----CceEEEECCCCCCHHHHHHHHhCC
Confidence 455666554 247889999999999999988654
No 334
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=91.61 E-value=0.16 Score=46.53 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl 60 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGI 60 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998754
No 335
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.61 E-value=0.17 Score=42.43 Aligned_cols=25 Identities=36% Similarity=0.250 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (277)
T PRK13642 32 KGEWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3457999999999999999988754
No 336
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=91.60 E-value=0.43 Score=39.98 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
...-+|||.|..|+||+|+|+..-.-++.
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~ 108 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSR 108 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhh
Confidence 45789999999999999999987665443
No 337
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=91.58 E-value=0.3 Score=41.61 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=27.2
Q ss_pred HHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 185 KEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..+..+|..+=....++-|+|.+|+|||+++-.+.-.
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~ 118 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVN 118 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444555544345778899999999999999987544
No 338
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.53 E-value=0.16 Score=43.85 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
....++|+|..|.|||||.+.++...
T Consensus 107 ~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 107 RNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34689999999999999999988653
No 339
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=91.52 E-value=0.18 Score=41.82 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-.+++|.|..|.|||||.+.+...
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 46 PGQKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcc
Confidence 3458999999999999999998764
No 340
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.48 E-value=0.18 Score=42.66 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-.+++|.|..|.|||||.+.+..-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (290)
T PRK13634 32 SGSYVAIIGHTGSGKSTLLQHLNGL 56 (290)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3568999999999999999998654
No 341
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=91.45 E-value=0.16 Score=46.19 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCC
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKISSNF 226 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~~~f 226 (227)
....+-++|.+|.|||.||+++.+....+|
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~f 304 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRF 304 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeE
Confidence 455777899999999999999999654443
No 342
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.44 E-value=0.3 Score=45.72 Aligned_cols=48 Identities=23% Similarity=0.232 Sum_probs=36.9
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-+..|...+..+. -...+=++|..|+||||+|+.+.+.+
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhc
Confidence 4577898888888888776442 23455678999999999999988774
No 343
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=91.42 E-value=5.9 Score=33.39 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-.++++|++++|||||.+++.+.
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~ 144 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGK 144 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999988654
No 344
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=91.41 E-value=0.17 Score=47.56 Aligned_cols=76 Identities=16% Similarity=0.097 Sum_probs=46.7
Q ss_pred HHHHHhhCCCee---EEeC---CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHhh-hccceeeeE
Q 045657 36 LYSALSLKSIQT---FIDD---QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCKR-EYAQIVIPV 108 (227)
Q Consensus 36 L~~~L~~~g~~~---~~d~---~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~~-~~~~~iipi 108 (227)
+.+.|+.-|+.- .++. ++..|+.-.-.|..++-..-..+++==|.-.-.+.-..++...+.... +.+..||-|
T Consensus 146 ~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~i 225 (623)
T PRK10261 146 AKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFI 225 (623)
T ss_pred HHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 444566667732 1232 566777766678888776666666666666666666667777666553 334556666
Q ss_pred Eee
Q 045657 109 FYR 111 (227)
Q Consensus 109 f~~ 111 (227)
-++
T Consensus 226 tHd 228 (623)
T PRK10261 226 THD 228 (623)
T ss_pred cCC
Confidence 554
No 345
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.37 E-value=0.2 Score=42.82 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
....+.|.|..|.|||||++++...+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 34678999999999999999887653
No 346
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=91.33 E-value=0.18 Score=46.02 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (506)
T PRK13549 30 AGEIVSLCGENGAGKSTLMKVLSGV 54 (506)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999988654
No 347
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=91.31 E-value=0.18 Score=44.73 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 53 ~Gei~~LvG~NGsGKSTLLr~I~Gl 77 (400)
T PRK10070 53 EGEIFVIMGLSGSGKSTMVRLLNRL 77 (400)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 3458999999999999999998764
No 348
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=91.31 E-value=0.17 Score=46.43 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....++|+|..|.|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999987643
No 349
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=91.29 E-value=0.17 Score=46.26 Aligned_cols=77 Identities=13% Similarity=0.050 Sum_probs=50.0
Q ss_pred HHHHHHhhCCCeeEEeC---CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEee
Q 045657 35 HLYSALSLKSIQTFIDD---QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFYR 111 (227)
Q Consensus 35 ~L~~~L~~~g~~~~~d~---~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~~ 111 (227)
.+...|+.-|+.-..+. ++..|+.-.-.+..++-.....+++==|...-.+....++...+......+..||-+-++
T Consensus 123 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~ 202 (506)
T PRK13549 123 RAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHK 202 (506)
T ss_pred HHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 45566777777544443 567777766678888776666666666776667777777777766553334456656554
No 350
>PRK13409 putative ATPase RIL; Provisional
Probab=91.29 E-value=0.18 Score=47.15 Aligned_cols=75 Identities=12% Similarity=0.061 Sum_probs=44.9
Q ss_pred HHHHHhhCCCeeEEeC---CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEee
Q 045657 36 LYSALSLKSIQTFIDD---QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFYR 111 (227)
Q Consensus 36 L~~~L~~~g~~~~~d~---~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~~ 111 (227)
+.+.|+.-|+.-..|. ++..|+...-.|..++-.-.-.+++==|...-...-..++...+..... +..|+-|-++
T Consensus 193 ~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd 270 (590)
T PRK13409 193 LDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHD 270 (590)
T ss_pred HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 3445566676654454 5666776666777776655555555556665556666666666665544 5556655544
No 351
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=91.27 E-value=0.16 Score=46.36 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 30 ~Ge~~~liG~nGsGKSTLl~~i~Gl 54 (510)
T PRK09700 30 PGEIHALLGENGAGKSTLMKVLSGI 54 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4568999999999999999987653
No 352
>PRK13409 putative ATPase RIL; Provisional
Probab=91.27 E-value=0.17 Score=47.19 Aligned_cols=25 Identities=36% Similarity=0.423 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...++||+|..|.|||||.+.+...
T Consensus 98 ~Gev~gLvG~NGaGKSTLlkiL~G~ 122 (590)
T PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGE 122 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999987654
No 353
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=91.26 E-value=0.17 Score=45.84 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
....++|+|..|.|||||||.+-.
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHc
Confidence 456899999999999999998654
No 354
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=91.26 E-value=0.19 Score=43.79 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+..-
T Consensus 31 ~Ge~~~llGpsGsGKSTLLr~IaGl 55 (351)
T PRK11432 31 QGTMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCC
Confidence 3458999999999999999988653
No 355
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=91.24 E-value=0.21 Score=41.08 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+...+||+|..|.|||||.+.+..-
T Consensus 52 ~Ge~vGiiG~NGaGKSTLlkliaGi 76 (249)
T COG1134 52 KGERVGIIGHNGAGKSTLLKLIAGI 76 (249)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCc
Confidence 3457999999999999999987654
No 356
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=0.15 Score=47.17 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=38.2
Q ss_pred CccCcccccchhHHHHHHHhhc---CC-------CCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 172 NYKNQLVGVESRVKEIESLLGA---ES-------KYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 172 ~~~~~~~g~~~~~~~~~~~l~~---~~-------~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
+...++.|.++.++++.+.++. .. .-.+=+.++|.+|.|||.||+++...-..
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 3457788988888777776542 11 12455778899999999999999876443
No 357
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=91.21 E-value=0.16 Score=46.19 Aligned_cols=77 Identities=10% Similarity=0.005 Sum_probs=47.0
Q ss_pred HHHHHHhhCCCeeEEeC---CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEee
Q 045657 35 HLYSALSLKSIQTFIDD---QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFYR 111 (227)
Q Consensus 35 ~L~~~L~~~g~~~~~d~---~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~~ 111 (227)
.+.+.|+.-|+....+. ++..|+.-.-.+..++-.-...+++-=|...-...-..++...+......+..|+-+-++
T Consensus 114 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~ 193 (491)
T PRK10982 114 DTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHK 193 (491)
T ss_pred HHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 34555666677644443 566777766677888776666666665665555666666766665543334456656554
No 358
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=91.19 E-value=0.2 Score=42.78 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...++++.|..|.|||||.+.+..-
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999988654
No 359
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=91.18 E-value=0.16 Score=45.53 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
...|+||.|..|+||||.++.+...+..+
T Consensus 99 ~G~V~GilG~NGiGKsTalkILaGel~PN 127 (591)
T COG1245 99 PGKVVGILGPNGIGKSTALKILAGELKPN 127 (591)
T ss_pred CCcEEEEEcCCCccHHHHHHHHhCccccC
Confidence 46799999999999999999877665544
No 360
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=91.17 E-value=0.17 Score=46.16 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=50.3
Q ss_pred HHHHHHHhhCCCeeEEeC---CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEe
Q 045657 34 SHLYSALSLKSIQTFIDD---QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFY 110 (227)
Q Consensus 34 ~~L~~~L~~~g~~~~~d~---~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~ 110 (227)
..+...|+..|+.-..+. ++..|+.-.-.|..++-.-.-.+++==|...-......++...+......+..||-+-+
T Consensus 124 ~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH 203 (510)
T PRK09700 124 VRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISH 203 (510)
T ss_pred HHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 345566777777644443 56677776667788877666666666676666677777777776665433445666655
Q ss_pred e
Q 045657 111 R 111 (227)
Q Consensus 111 ~ 111 (227)
+
T Consensus 204 d 204 (510)
T PRK09700 204 K 204 (510)
T ss_pred C
Confidence 4
No 361
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=91.16 E-value=0.17 Score=46.26 Aligned_cols=26 Identities=38% Similarity=0.424 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....++||+|..|.||||+|..+..-
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gl 58 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGL 58 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Confidence 34678999999999999999998753
No 362
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=91.13 E-value=0.18 Score=46.26 Aligned_cols=79 Identities=15% Similarity=0.141 Sum_probs=48.5
Q ss_pred HHHHHHHhhCCCee---EEeC---CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHhh-hccceee
Q 045657 34 SHLYSALSLKSIQT---FIDD---QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCKR-EYAQIVI 106 (227)
Q Consensus 34 ~~L~~~L~~~g~~~---~~d~---~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~~-~~~~~ii 106 (227)
..+.+.|+.-|+.- +.+. ++..|+.-.-.|..++-.-..++++==|...-.+.-..++...+.... ..+..||
T Consensus 132 ~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi 211 (529)
T PRK15134 132 GEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLL 211 (529)
T ss_pred HHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 34455666667642 1232 566777666678888776666667666777666666777776666542 2245566
Q ss_pred eEEeec
Q 045657 107 PVFYRV 112 (227)
Q Consensus 107 pif~~v 112 (227)
-|-++.
T Consensus 212 ~vtHd~ 217 (529)
T PRK15134 212 FITHNL 217 (529)
T ss_pred EEcCcH
Confidence 665553
No 363
>PRK08939 primosomal protein DnaI; Reviewed
Probab=91.10 E-value=0.23 Score=42.48 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..-+-++|..|+|||.||.++.+.+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44577899999999999999998853
No 364
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=91.05 E-value=0.37 Score=41.84 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=40.2
Q ss_pred CcccccchhHHHHHHHhhcCC----CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 175 NQLVGVESRVKEIESLLGAES----KYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~----~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..+.|+++.++++.+.+.... ..-+++-+.|.-|.|||||++.+-+-++
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999886432 3478999999999999999998766543
No 365
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.02 E-value=0.21 Score=41.02 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=23.4
Q ss_pred cCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 193 AESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 193 ~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..-....+.+|.|-.|+|||||.|.+-.-
T Consensus 29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gl 57 (263)
T COG1127 29 LDVPRGEILAILGGSGSGKSTLLRLILGL 57 (263)
T ss_pred eeecCCcEEEEECCCCcCHHHHHHHHhcc
Confidence 33345679999999999999999987654
No 366
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=91.00 E-value=0.19 Score=46.46 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+...
T Consensus 32 ~Ge~~~iiG~NGsGKSTLlk~i~G~ 56 (556)
T PRK11819 32 PGAKIGVLGLNGAGKSTLLRIMAGV 56 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557999999999999999998764
No 367
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=90.93 E-value=0.29 Score=42.02 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=27.3
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHH
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~ 219 (227)
...|.++|..+=....++-|+|..|+|||+|+-.+.
T Consensus 82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla 117 (313)
T TIGR02238 82 SQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLC 117 (313)
T ss_pred CHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHH
Confidence 345556666554567889999999999999997653
No 368
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=90.91 E-value=0.2 Score=46.43 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+...
T Consensus 349 ~Ge~~~l~G~NGsGKSTLl~~i~G~ 373 (556)
T PRK11819 349 PGGIVGIIGPNGAGKSTLFKMITGQ 373 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998754
No 369
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=90.89 E-value=0.21 Score=43.36 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...++++.|..|.|||||.+.+..-
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4568999999999999999988654
No 370
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=90.88 E-value=0.18 Score=46.06 Aligned_cols=78 Identities=10% Similarity=0.021 Sum_probs=47.7
Q ss_pred HHHHHHHhhCCCeeEEeC---CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEe
Q 045657 34 SHLYSALSLKSIQTFIDD---QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFY 110 (227)
Q Consensus 34 ~~L~~~L~~~g~~~~~d~---~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~ 110 (227)
+.+...|+.-|+.-+.+. ++..|+.-.-.|..++-.-...+++==|...-.+....++...+......+..||-+-+
T Consensus 119 ~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtH 198 (510)
T PRK15439 119 QKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISH 198 (510)
T ss_pred HHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 344556777777655554 56667776667788877665555555565555566666676666554333445665655
Q ss_pred e
Q 045657 111 R 111 (227)
Q Consensus 111 ~ 111 (227)
+
T Consensus 199 d 199 (510)
T PRK15439 199 K 199 (510)
T ss_pred C
Confidence 4
No 371
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=90.88 E-value=0.39 Score=40.88 Aligned_cols=49 Identities=24% Similarity=0.278 Sum_probs=38.6
Q ss_pred CccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 172 NYKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 172 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
....+++|.+.-+..|.+.+.. .+....-.+|.+|.|||+-|.+....+
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L 81 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARAL 81 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHh
Confidence 3456788999888888888775 345566689999999999999877763
No 372
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=90.87 E-value=0.3 Score=41.97 Aligned_cols=38 Identities=26% Similarity=0.284 Sum_probs=29.2
Q ss_pred hHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 045657 183 RVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
....|.++|..+-....++-|+|..|.|||||+..+..
T Consensus 81 g~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 81 GSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 34556666665555678999999999999999987654
No 373
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=90.83 E-value=0.48 Score=40.86 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=27.5
Q ss_pred HHHHHHHhh-cCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 184 VKEIESLLG-AESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 184 ~~~~~~~l~-~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...|..+|. .+=...+++-|+|.+|.||||||-.+.-.
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~ 78 (325)
T cd00983 40 SLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAE 78 (325)
T ss_pred CHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555555 33345778889999999999999986543
No 374
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]
Probab=90.83 E-value=0.28 Score=40.41 Aligned_cols=82 Identities=16% Similarity=0.098 Sum_probs=58.4
Q ss_pred CCCCcccEEEccccccCCccHHHHHHHHHhh--CCCeeEEeCC---CCCCCcchHHHHHH-HHhcccEEEEeecCcccch
Q 045657 12 RNINKYDVFLSFRGEDTRDNFTSHLYSALSL--KSIQTFIDDQ---LNRGDEISQSLVYA-IENSAISLIIFSEGYASSR 85 (227)
Q Consensus 12 ~~~~~~dvFISy~~~D~~~~~~~~L~~~L~~--~g~~~~~d~~---~~~g~~~~~~i~~~-i~~s~~~i~v~S~~~~~S~ 85 (227)
..++.||+=|||.|+- .++++....+++. ..+..|+|-+ ...-.++..-+... =..|++.+|.+..+|....
T Consensus 173 ~~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~sL~~~L~~~Y~~rC~~~~VF~~~~Y~~K~ 250 (329)
T COG4916 173 SSEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGSLVSTLDPGYDIRCVVTTVFNTGSYICKS 250 (329)
T ss_pred ccccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCccHHHhcccccCceEEEEEEEeCCceEEee
Confidence 5678999999999975 3599999999994 4455777752 11112222222222 2478889999999999999
Q ss_pred hhHHHHHHHH
Q 045657 86 WCLDELVKIL 95 (227)
Q Consensus 86 wc~~El~~~~ 95 (227)
||.-|....-
T Consensus 251 ~c~~E~~~~r 260 (329)
T COG4916 251 TCHIEGLEGR 260 (329)
T ss_pred eeccchhhcc
Confidence 9999977654
No 375
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=90.82 E-value=0.2 Score=45.98 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 344 ~Ge~~~l~G~NGsGKSTLl~~i~G~ 368 (530)
T PRK15064 344 AGERLAIIGENGVGKTTLLRTLVGE 368 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998753
No 376
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=90.79 E-value=0.26 Score=40.98 Aligned_cols=27 Identities=33% Similarity=0.329 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...-+.++|-.|+|||.||.++-+++.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 445577899999999999999988854
No 377
>PRK11823 DNA repair protein RadA; Provisional
Probab=90.78 E-value=0.45 Score=42.88 Aligned_cols=40 Identities=25% Similarity=0.313 Sum_probs=30.2
Q ss_pred hHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 183 RVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
....+.++|..+=....++-|.|.+|+|||||+.++....
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~ 104 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARL 104 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455666665544456788999999999999999987654
No 378
>PRK12608 transcription termination factor Rho; Provisional
Probab=90.77 E-value=0.25 Score=43.30 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 200 TLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
-..|+|-.|+|||||++.+.+.+..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3589999999999999999887543
No 379
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.76 E-value=0.22 Score=41.27 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-..++|.|..|.|||||.+.+...
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~iaG~ 59 (257)
T PRK14246 35 NNSIFGIMGPSGSGKSTLLKVLNRL 59 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999988754
No 380
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=90.74 E-value=0.22 Score=37.14 Aligned_cols=22 Identities=32% Similarity=0.749 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 045657 200 TLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.+.++|..|+|||||.+.+..+
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~ 106 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK 106 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999887653
No 381
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=90.74 E-value=0.23 Score=42.14 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+.|+.|..|.|||||.+.+...
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999987664
No 382
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=90.74 E-value=0.22 Score=39.46 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
-..++|.|-.|.||+|||+.+..
T Consensus 39 ~QTlaiIG~NGSGKSTLakMlaG 61 (267)
T COG4167 39 GQTLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred CcEEEEEccCCCcHhHHHHHHhc
Confidence 45789999999999999998754
No 383
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=90.73 E-value=0.078 Score=46.21 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=43.4
Q ss_pred HHHHHHHHhhCCCeeEE---eC------CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHh-hhcc
Q 045657 33 TSHLYSALSLKSIQTFI---DD------QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCK-REYA 102 (227)
Q Consensus 33 ~~~L~~~L~~~g~~~~~---d~------~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~-~~~~ 102 (227)
.+.|..-.+..|+.|.- .. ..-.|.--..++.+.++....-++||-... |+--...|..++... -++.
T Consensus 19 ~~E~~~L~~~~~~~v~~~~~~~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~l--~p~q~~nl~~~~~~~v~Dr~ 96 (351)
T TIGR03156 19 LEELAELAETAGAEVVGTVTQKRSRPDPATYIGKGKVEEIAELVEELEADLVIFDHEL--SPSQERNLEKALGCRVIDRT 96 (351)
T ss_pred HHHHHHHHHHCCCEEEEEEEEecCCCCCCeEecccHHHHHHHHHHhcCCCEEEECCCC--CHHHHHHHHHHhCCcccchH
Confidence 44555555667877532 11 112233334778888888888888887544 444555666666554 3334
Q ss_pred ceeeeEE
Q 045657 103 QIVIPVF 109 (227)
Q Consensus 103 ~~iipif 109 (227)
..|+-||
T Consensus 97 ~lil~iF 103 (351)
T TIGR03156 97 GLILDIF 103 (351)
T ss_pred HHHHHHH
Confidence 5666666
No 384
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=90.71 E-value=0.22 Score=45.67 Aligned_cols=76 Identities=7% Similarity=0.009 Sum_probs=48.0
Q ss_pred HHHHhhCCCeeEEeC---CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHh-hhccceeeeEEeec
Q 045657 37 YSALSLKSIQTFIDD---QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCK-REYAQIVIPVFYRV 112 (227)
Q Consensus 37 ~~~L~~~g~~~~~d~---~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~-~~~~~~iipif~~v 112 (227)
.+.|+.-|+.-..+. ++..|+.-.-.|..++-.....+++==|...-.+....++...+... +..+..||-|-++.
T Consensus 150 ~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~ 229 (520)
T TIGR03269 150 VDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP 229 (520)
T ss_pred HHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 344566666544443 56677776667888877766667776677666667677776666654 33345666666553
No 385
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=90.70 E-value=0.23 Score=43.71 Aligned_cols=25 Identities=36% Similarity=0.306 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-.+++|.|..|.|||||.+.+..-
T Consensus 39 ~Ge~~~LlGpsGsGKSTLLr~IaGl 63 (375)
T PRK09452 39 NGEFLTLLGPSGCGKTTVLRLIAGF 63 (375)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3458999999999999999998753
No 386
>PLN02674 adenylate kinase
Probab=90.68 E-value=0.47 Score=39.21 Aligned_cols=23 Identities=35% Similarity=0.284 Sum_probs=19.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..|-|.|++|.||||+|+.+..+
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~ 54 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDE 54 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34668899999999999988775
No 387
>PRK09866 hypothetical protein; Provisional
Probab=90.67 E-value=0.3 Score=45.80 Aligned_cols=42 Identities=26% Similarity=0.259 Sum_probs=31.0
Q ss_pred cchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 180 VESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...++..|.+.|..-....-+++|+|..|.|||||.+++...
T Consensus 51 i~~ri~~L~~~L~Kv~~~~~~valvG~sgaGKSTLiNaL~G~ 92 (741)
T PRK09866 51 IAERHAMLNNELRKISRLEMVLAIVGTMKAGKSTTINAIVGT 92 (741)
T ss_pred HHHHHHHHHHHHHHHhccceEEEEECCCCCCHHHHHHHHhCC
Confidence 345566666666543334578999999999999999998753
No 388
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=90.66 E-value=0.19 Score=44.47 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
....+||+|..|.|||||.+++.+=+
T Consensus 312 ~gqTlGlVGESGSGKsTlG~allrL~ 337 (534)
T COG4172 312 RGQTLGLVGESGSGKSTLGLALLRLI 337 (534)
T ss_pred CCCeEEEEecCCCCcchHHHHHHhhc
Confidence 34689999999999999999987653
No 389
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=90.63 E-value=0.21 Score=45.54 Aligned_cols=76 Identities=11% Similarity=0.089 Sum_probs=49.0
Q ss_pred HHHHHhhCCCeeEEeC---CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEee
Q 045657 36 LYSALSLKSIQTFIDD---QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFYR 111 (227)
Q Consensus 36 L~~~L~~~g~~~~~d~---~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~~ 111 (227)
+.+.|+.-|+.-..+. ++..|+.-.-.|..++-.-...+++==|...-.+....++...+......+..|+-+-++
T Consensus 122 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd 200 (501)
T PRK10762 122 ADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHR 200 (501)
T ss_pred HHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4455666677544443 667777776678888776666666666766666677777776666554334456666554
No 390
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=90.62 E-value=0.38 Score=41.22 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=27.0
Q ss_pred HHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 185 KEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..+.++|..+=....++-|+|.+|.|||++|-.+.-.
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~ 125 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVN 125 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 3444555444445778899999999999999987543
No 391
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.60 E-value=0.19 Score=43.45 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+.|+|..|.||||+.+++.+.+
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhC
Confidence 4467889999999999999987754
No 392
>PRK12288 GTPase RsgA; Reviewed
Probab=90.60 E-value=0.3 Score=42.56 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=24.9
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+++|.+.|.. .++.++|..|+|||||.+++..+
T Consensus 196 ideL~~~L~~-----ki~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 196 LEELEAALTG-----RISIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred HHHHHHHHhh-----CCEEEECCCCCCHHHHHHHhccc
Confidence 5566666642 24788999999999999988654
No 393
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.56 E-value=0.44 Score=39.80 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=25.8
Q ss_pred hHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 183 RVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+.+..++.. ...++.|.|..|.||||+.+++.+.+
T Consensus 68 ~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 68 NLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred HHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 33444444432 23468899999999999999886654
No 394
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=90.54 E-value=0.24 Score=43.61 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
-.+++|.|..|.|||||.+.+..
T Consensus 45 Ge~~~llGpsGsGKSTLLr~IaG 67 (377)
T PRK11607 45 GEIFALLGASGCGKSTLLRMLAG 67 (377)
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999998864
No 395
>PLN03073 ABC transporter F family; Provisional
Probab=90.51 E-value=0.2 Score=47.83 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
....+||+|..|.|||||.+.+..
T Consensus 202 ~Ge~~gLvG~NGsGKSTLLr~l~g 225 (718)
T PLN03073 202 FGRHYGLVGRNGTGKTTFLRYMAM 225 (718)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcC
Confidence 456899999999999999999864
No 396
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=90.49 E-value=0.3 Score=42.14 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=23.6
Q ss_pred CCeEEEEE--EcCCCchHHHHHHHHHHHhhc
Q 045657 196 KYVYTLGI--WGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 196 ~~~~~~~i--~G~gG~GKTtla~~v~~~~~~ 224 (227)
-++.||+| .+.||.|||+++..+.+.++.
T Consensus 47 ~~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~ 77 (325)
T PRK00652 47 APVPVIVVGNITVGGTGKTPVVIALAEQLQA 77 (325)
T ss_pred CCCCEEEEcCeeCCCCChHHHHHHHHHHHHH
Confidence 34667777 899999999999999887543
No 397
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=90.45 E-value=0.23 Score=46.81 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+...
T Consensus 344 ~Ge~~~l~G~NGsGKSTLlk~l~G~ 368 (635)
T PRK11147 344 RGDKIALIGPNGCGKTTLLKLMLGQ 368 (635)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3458999999999999999998764
No 398
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=90.45 E-value=0.36 Score=41.69 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..++|.|.|-||+||||++..+...
T Consensus 30 ~~~ii~v~gkgG~GKSt~a~nLa~~ 54 (329)
T cd02033 30 KTQIIAIYGKGGIGKSFTLANLSYM 54 (329)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988876544
No 399
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=90.44 E-value=0.21 Score=46.16 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|.|..|.|||||.+.+...
T Consensus 347 ~Ge~~~l~G~NGsGKSTLl~~l~G~ 371 (552)
T TIGR03719 347 PGGIVGVIGPNGAGKSTLFRMITGQ 371 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3568999999999999999998754
No 400
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.39 E-value=0.24 Score=39.21 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=21.1
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHH
Q 045657 195 SKYVYTLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 195 ~~~~~~~~i~G~gG~GKTtla~~v~ 219 (227)
....-||+|.|-.|.||+|+.|.+.
T Consensus 29 A~~GdVisIIGsSGSGKSTfLRCiN 53 (256)
T COG4598 29 ANAGDVISIIGSSGSGKSTFLRCIN 53 (256)
T ss_pred cCCCCEEEEecCCCCchhHHHHHHH
Confidence 3456689999999999999999863
No 401
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.33 E-value=0.38 Score=46.85 Aligned_cols=47 Identities=17% Similarity=0.037 Sum_probs=32.6
Q ss_pred CCCccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 170 PRNYKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 170 ~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+|....+++-|..-+ +.|.. ..+.+++-|.|.+|.||||++....++
T Consensus 9 ~p~~~~~~~~R~rl~----~~l~~-~~~~~~~~v~apaG~GKTtl~~~~~~~ 55 (903)
T PRK04841 9 RPVRLHNTVVRERLL----AKLSG-ANNYRLVLVTSPAGYGKTTLISQWAAG 55 (903)
T ss_pred CCCCccccCcchHHH----HHHhc-ccCCCeEEEECCCCCCHHHHHHHHHHh
Confidence 444456666665433 33432 235788999999999999999987654
No 402
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.29 E-value=0.31 Score=42.59 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+.|+|..|.||||+.+++.+.+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999987765
No 403
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=90.23 E-value=0.24 Score=45.04 Aligned_cols=78 Identities=15% Similarity=0.105 Sum_probs=48.1
Q ss_pred HHHHHHhhCCCeeEEeC---CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEee
Q 045657 35 HLYSALSLKSIQTFIDD---QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFYR 111 (227)
Q Consensus 35 ~L~~~L~~~g~~~~~d~---~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~~ 111 (227)
.+.+.|+.-|+.-..+. ++..|+.-.-.+..++-.-...+++==|...-.+.-..++...+......+..||-+-++
T Consensus 115 ~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~ 194 (490)
T PRK10938 115 RCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR 194 (490)
T ss_pred HHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 34456677777544443 667777776678888776555666655666666666667777666553334456656554
Q ss_pred c
Q 045657 112 V 112 (227)
Q Consensus 112 v 112 (227)
.
T Consensus 195 ~ 195 (490)
T PRK10938 195 F 195 (490)
T ss_pred H
Confidence 3
No 404
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=90.21 E-value=0.25 Score=45.67 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+...
T Consensus 30 ~Ge~~~liG~NGsGKSTLl~~i~G~ 54 (552)
T TIGR03719 30 PGAKIGVLGLNGAGKSTLLRIMAGV 54 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457999999999999999998764
No 405
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=90.20 E-value=0.25 Score=46.62 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+...
T Consensus 337 ~Ge~~~l~G~NGsGKSTLlk~l~G~ 361 (638)
T PRK10636 337 PGSRIGLLGRNGAGKSTLIKLLAGE 361 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998764
No 406
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=90.18 E-value=0.24 Score=45.19 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=47.8
Q ss_pred HHHHHHhhCCCeeEEeC---CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEee
Q 045657 35 HLYSALSLKSIQTFIDD---QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFYR 111 (227)
Q Consensus 35 ~L~~~L~~~g~~~~~d~---~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~~ 111 (227)
.+...|+.-|+.-..+. ++..|+.-.-.+..++-.-...+++==|...-.+....++...+......+..||-+-++
T Consensus 120 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd 199 (501)
T PRK11288 120 EAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHR 199 (501)
T ss_pred HHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 45556666677533333 566677666677777766665666666666666666777777666553334566666655
No 407
>PRK09354 recA recombinase A; Provisional
Probab=90.16 E-value=0.59 Score=40.70 Aligned_cols=38 Identities=24% Similarity=0.241 Sum_probs=28.2
Q ss_pred HHHHHHHhh-cCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 184 VKEIESLLG-AESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 184 ~~~~~~~l~-~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...|..+|. .+=...+++-|+|..|.||||||-.+.-.
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~ 83 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE 83 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445556665 44455789999999999999999976543
No 408
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=90.15 E-value=0.47 Score=37.90 Aligned_cols=26 Identities=15% Similarity=0.068 Sum_probs=20.6
Q ss_pred CeEEEEEE-cCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIW-GFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~-G~gG~GKTtla~~v~~~~ 222 (227)
..++|+|. +.||+||||+|..+...+
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~l 60 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISL 60 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHH
Confidence 46789998 579999999988766543
No 409
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=90.14 E-value=0.56 Score=35.43 Aligned_cols=42 Identities=24% Similarity=0.410 Sum_probs=27.9
Q ss_pred cccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 045657 178 VGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 178 ~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
.|.+.-++.+.+.+.......+ +.++|..|+|||||.+...+
T Consensus 82 ~gi~~L~~~l~~~~~~~~~~~~-~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 82 LGTKILRRTIKELAKIDGKEGK-VGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred ccHHHHHHHHHHHHhhcCCCcE-EEEECCCCCCHHHHHHHHhC
Confidence 3555545555555543333344 48999999999999998764
No 410
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=90.08 E-value=0.42 Score=36.21 Aligned_cols=25 Identities=28% Similarity=0.667 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....++++|..|+|||||.+.+.+.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~ 123 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNK 123 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcc
Confidence 3456889999999999999988764
No 411
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=90.08 E-value=0.25 Score=45.49 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.-|+|+|..|+|||||.+.+...+
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~ 372 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGEL 372 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhc
Confidence 3468999999999999999986653
No 412
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=90.07 E-value=0.25 Score=45.00 Aligned_cols=77 Identities=10% Similarity=0.042 Sum_probs=49.1
Q ss_pred HHHHHHhhCCCeeEE-eC---CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEe
Q 045657 35 HLYSALSLKSIQTFI-DD---QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFY 110 (227)
Q Consensus 35 ~L~~~L~~~g~~~~~-d~---~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~ 110 (227)
.+.+.|+.-|+.-.. +. ++..|+.-.-.+..++-.....+++==|...-.+....++...+......+..|+-+-+
T Consensus 120 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitH 199 (500)
T TIGR02633 120 RAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISH 199 (500)
T ss_pred HHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 345566677775432 22 56777776667888877666666666677667777777777776655434445666655
Q ss_pred e
Q 045657 111 R 111 (227)
Q Consensus 111 ~ 111 (227)
+
T Consensus 200 d 200 (500)
T TIGR02633 200 K 200 (500)
T ss_pred c
Confidence 4
No 413
>PRK01889 GTPase RsgA; Reviewed
Probab=90.06 E-value=0.44 Score=41.62 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=27.8
Q ss_pred hHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 183 RVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.+++|..+|.. ...++++|..|+|||||.+.+...
T Consensus 184 gl~~L~~~L~~----g~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 184 GLDVLAAWLSG----GKTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred cHHHHHHHhhc----CCEEEEECCCCccHHHHHHHHHHh
Confidence 36677777752 347899999999999999988764
No 414
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=90.05 E-value=0.57 Score=39.83 Aligned_cols=48 Identities=23% Similarity=0.232 Sum_probs=32.3
Q ss_pred cCcccccc---hhHHHHHHHhhcCC-CCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 174 KNQLVGVE---SRVKEIESLLGAES-KYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 174 ~~~~~g~~---~~~~~~~~~l~~~~-~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.+..||-. .-++.+.+++.... .-...+-|+|-.|.|||+|++...+.
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~ 84 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRL 84 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHH
Confidence 34555532 34555566665332 22456889999999999999998876
No 415
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.04 E-value=0.23 Score=41.36 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=20.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHH
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
....++-|.|.+|.|||++|.++..
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~ 58 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAV 58 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3467888999999999999998643
No 416
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=90.01 E-value=0.43 Score=45.23 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..+|.|-|+.|.||||+|+.+.+++.
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~ 467 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALG 467 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhC
Confidence 55899999999999999999988754
No 417
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=89.93 E-value=0.28 Score=45.52 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....++|+|..|.|||||++.+..-
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3467999999999999999988664
No 418
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=89.92 E-value=0.45 Score=41.39 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHH
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~ 219 (227)
...|.++|..+=....+.-|+|..|+|||+|+-.+.
T Consensus 112 ~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqla 147 (344)
T PLN03187 112 SQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLC 147 (344)
T ss_pred cHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHH
Confidence 344555665444557788899999999999998763
No 419
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=89.89 E-value=0.26 Score=45.64 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
....++|+|..|.|||||++.+.+
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r 377 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLR 377 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999998754
No 420
>PHA02624 large T antigen; Provisional
Probab=89.85 E-value=0.64 Score=43.30 Aligned_cols=38 Identities=26% Similarity=0.160 Sum_probs=29.4
Q ss_pred HHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 186 EIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 186 ~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.+.+.+..+-...+++.++|..|.||||++.++.+-++
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~ 456 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCG 456 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 33444444556688999999999999999999988753
No 421
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=89.82 E-value=0.23 Score=43.14 Aligned_cols=25 Identities=32% Similarity=0.491 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+.|.|..|.||||+++++.+.+
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHccc
Confidence 4467889999999999999987653
No 422
>PRK11058 GTPase HflX; Provisional
Probab=89.80 E-value=2.2 Score=38.29 Aligned_cols=75 Identities=13% Similarity=0.293 Sum_probs=45.3
Q ss_pred HHHHHHHHhhCCCeeEE---eC------CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHh-hhcc
Q 045657 33 TSHLYSALSLKSIQTFI---DD------QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCK-REYA 102 (227)
Q Consensus 33 ~~~L~~~L~~~g~~~~~---d~------~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~-~~~~ 102 (227)
.+.|..-.+..|+.|.- -. ..-.|.--..++.+.++....-++||-.. -|+--...|..++... -++.
T Consensus 27 ~~El~~L~~~~g~~v~~~~~q~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~--lsp~q~~nle~~~~~~v~DR~ 104 (426)
T PRK11058 27 LQEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDHA--LSPAQERNLERLCECRVIDRT 104 (426)
T ss_pred HHHHHHHHHHCCCEEEEEEEEecCCCCCCeeecccHHHHHHHHHHhcCCCEEEECCC--CCHHHHHHHHHHHCCeEecch
Confidence 56666666778887532 11 12233434477888888888888888754 3455556677766544 3334
Q ss_pred ceeeeEE
Q 045657 103 QIVIPVF 109 (227)
Q Consensus 103 ~~iipif 109 (227)
..|+-||
T Consensus 105 ~lil~IF 111 (426)
T PRK11058 105 GLILDIF 111 (426)
T ss_pred hHHHHHH
Confidence 5566665
No 423
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=89.77 E-value=0.31 Score=42.71 Aligned_cols=23 Identities=43% Similarity=0.475 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
-.+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~llGpsGsGKSTLLr~iaG 53 (362)
T TIGR03258 31 GELLALIGKSGCGKTTLLRAIAG 53 (362)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999998764
No 424
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=89.74 E-value=0.48 Score=42.73 Aligned_cols=49 Identities=27% Similarity=0.364 Sum_probs=38.2
Q ss_pred ccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 173 YKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....++|+-..++++...+..-...-.-|-|.|..|+||-.+|+++++.
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~ 187 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQA 187 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhh
Confidence 3578999999999998887642222224568999999999999999985
No 425
>PRK03003 GTP-binding protein Der; Reviewed
Probab=89.69 E-value=0.42 Score=43.37 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
....|+|+|.+|+|||||.+.+..
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~ 60 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILG 60 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Confidence 456799999999999999988764
No 426
>PRK12289 GTPase RsgA; Reviewed
Probab=89.68 E-value=0.4 Score=41.84 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=25.0
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+++|.+.|.. .++.++|+.|+|||||.+.+..+
T Consensus 163 I~eL~~~L~~-----ki~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 163 LEALLEQLRN-----KITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred HHHHhhhhcc-----ceEEEEeCCCCCHHHHHHHHcCc
Confidence 5556665542 25789999999999999988754
No 427
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=89.67 E-value=0.7 Score=39.60 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=21.6
Q ss_pred CCeEEEEEEc-CCCchHHHHHHHHHHHh
Q 045657 196 KYVYTLGIWG-FGGIGKTTIARAIFDKI 222 (227)
Q Consensus 196 ~~~~~~~i~G-~gG~GKTtla~~v~~~~ 222 (227)
...++|+|+| -||+||||+|-.+...+
T Consensus 91 ~~~~vIav~~~KGGvGkTT~a~nLA~~l 118 (322)
T TIGR03815 91 ARGVVVAVIGGRGGAGASTLAAALALAA 118 (322)
T ss_pred CCceEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 3478999985 79999999998876553
No 428
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=89.65 E-value=0.33 Score=44.61 Aligned_cols=27 Identities=22% Similarity=0.456 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...-+++|+|.+|.|||||.+.+-+++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~ 93 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRF 93 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHH
Confidence 346688899999999999999887764
No 429
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.62 E-value=0.63 Score=43.70 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=38.1
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.+++|.+.-++.|...+..+. -...+=++|..|+||||+|+.+...+
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999988999988887543 23456689999999999999887764
No 430
>PRK06851 hypothetical protein; Provisional
Probab=89.57 E-value=0.42 Score=41.88 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-+++-|-|..|+|||||.+.++...
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHH
Confidence 4678899999999999999999874
No 431
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=89.55 E-value=0.56 Score=41.43 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=17.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAI 218 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v 218 (227)
+-+++.++|..|+||||-....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKL 223 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKL 223 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHH
Confidence 3789999999999998754443
No 432
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=89.51 E-value=0.31 Score=42.97 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..+++|.|..|.|||||.+.+..-
T Consensus 50 Gei~~I~G~nGsGKSTLlr~L~Gl 73 (382)
T TIGR03415 50 GEICVLMGLSGSGKSSLLRAVNGL 73 (382)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999988654
No 433
>PLN03073 ABC transporter F family; Provisional
Probab=89.49 E-value=0.3 Score=46.68 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..+++|+|..|.|||||.+.+...
T Consensus 535 Ge~i~LvG~NGsGKSTLLk~L~Gl 558 (718)
T PLN03073 535 DSRIAMVGPNGIGKSTILKLISGE 558 (718)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999998754
No 434
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=89.48 E-value=0.37 Score=40.06 Aligned_cols=36 Identities=28% Similarity=0.291 Sum_probs=26.1
Q ss_pred HHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 045657 185 KEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
..|.++|..+=....+.-|+|.+|+|||.||-.+.=
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~ 60 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAV 60 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHH
Confidence 455556644334456899999999999999987653
No 435
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=89.36 E-value=0.45 Score=43.74 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....+|-++|..|.||||+|+.++..
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~ 392 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQP 392 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999998764
No 436
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.35 E-value=0.65 Score=42.32 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=31.1
Q ss_pred hhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 182 SRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..+..+.++|..+=....++-|.|.+|+|||||+.++...
T Consensus 247 tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~ 286 (484)
T TIGR02655 247 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLEN 286 (484)
T ss_pred CChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456677777665556778889999999999999987554
No 437
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=89.31 E-value=0.38 Score=39.08 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+|+|+|..|.|||||.+.+...
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~ 62 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKN 62 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4678999999999999999887654
No 438
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=89.29 E-value=0.73 Score=39.22 Aligned_cols=52 Identities=25% Similarity=0.273 Sum_probs=38.2
Q ss_pred ccCcccccchhHHH---HHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 173 YKNQLVGVESRVKE---IESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 173 ~~~~~~g~~~~~~~---~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
.+..++|.+...+. +.+++....-..|.+-+-|..|.|||+||-++-..+..
T Consensus 36 ~~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqELG~ 90 (456)
T KOG1942|consen 36 VAAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQELGP 90 (456)
T ss_pred cccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCC
Confidence 46788998765543 35555544444677788899999999999999888654
No 439
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=89.29 E-value=0.33 Score=44.57 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+...
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3568999999999999999998764
No 440
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=89.23 E-value=0.32 Score=46.20 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
....++|+|..|.|||||++.+..
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~g 501 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLG 501 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999998754
No 441
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=89.18 E-value=0.39 Score=41.34 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+.|.|..|.||||+++++...
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 346778899999999999998765
No 442
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.16 E-value=0.44 Score=41.84 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...||-++|..|.||||.+..+...++
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~k 126 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYK 126 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHH
Confidence 468999999999999999987655443
No 443
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.16 E-value=0.64 Score=41.78 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=42.2
Q ss_pred CccCcccccchhHHHHHHHhhc--CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 172 NYKNQLVGVESRVKEIESLLGA--ESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 172 ~~~~~~~g~~~~~~~~~~~l~~--~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..+..+.||+.++..+.+++.. +.+....+-|.|.+|.|||.+...++.+..
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~ 200 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLS 200 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhh
Confidence 3467899999999999998863 234466778889999999999999998754
No 444
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.13 E-value=0.35 Score=41.21 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=19.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~ 219 (227)
...+.||+|..|-|||||.|.+-
T Consensus 31 ~GeI~GIIG~SGAGKSTLiR~iN 53 (339)
T COG1135 31 KGEIFGIIGYSGAGKSTLLRLIN 53 (339)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHh
Confidence 45589999999999999999763
No 445
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.12 E-value=0.41 Score=45.83 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+++++|..|+||||++..+...+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4799999999999999998876553
No 446
>PRK15115 response regulator GlrR; Provisional
Probab=89.08 E-value=0.6 Score=41.72 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=30.9
Q ss_pred cccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 176 QLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 176 ~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.++|....+..+.+....-...-..+-|.|..|+|||++|+.+++.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHh
Confidence 4677666665555544322222234568999999999999999876
No 447
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=89.03 E-value=0.35 Score=45.70 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 200 TLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
-+.++|..|.|||++|+.+.+....
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKV 211 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3788999999999999999887543
No 448
>smart00350 MCM minichromosome maintenance proteins.
Probab=89.00 E-value=0.73 Score=42.28 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=33.4
Q ss_pred cCcccccchhHHHHHHHhhcCC-----CCeE-----EEEEEcCCCchHHHHHHHHHHH
Q 045657 174 KNQLVGVESRVKEIESLLGAES-----KYVY-----TLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~-----~~~~-----~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.+.+.|.+..+..+.-.|..+. ++.+ -|-++|-.|+|||+||+.+++-
T Consensus 202 ~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~ 259 (509)
T smart00350 202 APSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKT 259 (509)
T ss_pred CccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHH
Confidence 5678888876666655554332 1111 3668899999999999999874
No 449
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=88.95 E-value=0.6 Score=36.36 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...++++|++++|||||.+.+.+.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~ 140 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRS 140 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 346889999999999999988764
No 450
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=88.95 E-value=0.36 Score=39.78 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 045657 200 TLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~ 221 (227)
=..|+|..|.|||||.+.+...
T Consensus 59 ~W~I~G~NGsGKTTLL~ll~~~ 80 (257)
T COG1119 59 HWAIVGPNGAGKTTLLSLLTGE 80 (257)
T ss_pred cEEEECCCCCCHHHHHHHHhcc
Confidence 4678899999999999987543
No 451
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=88.93 E-value=0.42 Score=44.99 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...++-+.|+.|.||||+|+++.+.+.
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~ 485 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLH 485 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHH
Confidence 367889999999999999999988753
No 452
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.90 E-value=0.52 Score=40.94 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...+.|.|..|.||||+.+++.+.+.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 35688999999999999999887653
No 453
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=88.82 E-value=0.45 Score=37.35 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...++.+.|..|.||+||.+..|..+
T Consensus 36 aGECvvL~G~SG~GKStllr~LYaNY 61 (235)
T COG4778 36 AGECVVLHGPSGSGKSTLLRSLYANY 61 (235)
T ss_pred CccEEEeeCCCCCcHHHHHHHHHhcc
Confidence 45688899999999999999999863
No 454
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=88.67 E-value=0.36 Score=46.02 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....++|+|..|.|||||++.+..-
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999987553
No 455
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=88.67 E-value=0.39 Score=45.87 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.....++|+|..|.|||||++.+.+-
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34568999999999999999988664
No 456
>COG1162 Predicted GTPases [General function prediction only]
Probab=88.64 E-value=0.58 Score=39.74 Aligned_cols=35 Identities=26% Similarity=0.485 Sum_probs=26.6
Q ss_pred hhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 182 SRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..+++|..+|.. ++..+.|-.|+|||||.+++-..
T Consensus 153 ~~~~~l~~~l~~-----~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 153 DGLEELAELLAG-----KITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred ccHHHHHHHhcC-----CeEEEECCCCCcHHHHHHhhCch
Confidence 346777777752 26777899999999999987643
No 457
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=88.58 E-value=0.9 Score=41.60 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=28.7
Q ss_pred hhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 045657 182 SRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
..+..|.++|..+=...+++-|.|-+|.|||+||..+..
T Consensus 15 TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~ 53 (509)
T PRK09302 15 TGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLV 53 (509)
T ss_pred CCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 334555566654545577899999999999999998643
No 458
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=88.54 E-value=0.32 Score=44.47 Aligned_cols=47 Identities=32% Similarity=0.352 Sum_probs=34.9
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
-.+++|.+.-+..|...+..+.- ..---..|..|+||||+||.+...
T Consensus 15 F~evvGQe~v~~~L~nal~~~ri-~hAYlfsG~RGvGKTt~Ari~Aka 61 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGRI-AHAYLFSGPRGVGKTTIARILAKA 61 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCcc-hhhhhhcCCCCcCchhHHHHHHHH
Confidence 46779999888888888875431 122234599999999999988765
No 459
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=88.49 E-value=0.4 Score=44.18 Aligned_cols=25 Identities=40% Similarity=0.424 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....++|+|..|.|||||++.+...
T Consensus 343 ~G~~~~ivG~sGsGKSTL~~ll~g~ 367 (544)
T TIGR01842 343 AGEALAIIGPSGSGKSTLARLIVGI 367 (544)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999988654
No 460
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=88.46 E-value=0.61 Score=40.53 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=28.3
Q ss_pred hhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHH
Q 045657 182 SRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~ 219 (227)
.....|.++|..+-....++-|+|.+|+|||+||-.+.
T Consensus 107 tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~ 144 (342)
T PLN03186 107 TGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLC 144 (342)
T ss_pred CCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHH
Confidence 33455666666544557788899999999999998655
No 461
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=88.45 E-value=0.38 Score=45.83 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....++|+|..|.|||||++.+..-
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~gl 528 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAGL 528 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999987543
No 462
>PRK05973 replicative DNA helicase; Provisional
Probab=88.44 E-value=0.7 Score=38.03 Aligned_cols=25 Identities=16% Similarity=-0.041 Sum_probs=20.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...++-|.|.+|.|||+++-.+...
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~ 87 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVE 87 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4557778899999999999986443
No 463
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=88.38 E-value=0.8 Score=42.80 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.+.+-|+|-.|+|||.|++++.+.+.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~ 339 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYAR 339 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999998753
No 464
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=88.26 E-value=0.57 Score=41.89 Aligned_cols=46 Identities=20% Similarity=0.274 Sum_probs=32.8
Q ss_pred CcccccchhHHHHHHHhhcC-CCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 175 NQLVGVESRVKEIESLLGAE-SKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~-~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..++|....++++...+..- ..+.. +-|.|-.|+||+++|+.++..
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~~~~~-vli~Ge~GtGK~~lA~~ih~~ 185 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAPSDIT-VLLLGESGTGKEVLARALHQL 185 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCC-EEEECCCCcCHHHHHHHHHHh
Confidence 35677777777776665432 22333 448999999999999999875
No 465
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=88.20 E-value=1.1 Score=39.70 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=20.4
Q ss_pred CeEEEEEEc-CCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWG-FGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G-~gG~GKTtla~~v~~~~ 222 (227)
..++|+|.. =||+||||+|-.+...+
T Consensus 105 ~~~vIai~n~KGGVGKTT~a~nLA~~L 131 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSVHLAQDL 131 (388)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHH
Confidence 468888884 49999999998776543
No 466
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=88.13 E-value=0.53 Score=38.23 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHH
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~ 219 (227)
..-.|.++.|..|+||||+.|.+-
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHH
Confidence 456789999999999999999753
No 467
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=88.08 E-value=0.51 Score=37.86 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=17.6
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 045657 200 TLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~ 220 (227)
.+.+.|..|+|||||.+.+..
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 567789999999999987653
No 468
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=88.07 E-value=0.42 Score=44.46 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....++|+|..|.|||||++.+..-
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4467999999999999999987543
No 469
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=88.05 E-value=0.42 Score=44.40 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
....++|+|..|.|||||++.+..
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999998754
No 470
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=87.98 E-value=0.64 Score=36.31 Aligned_cols=23 Identities=35% Similarity=0.286 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 045657 200 TLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
+.-|.|.+|+||||++-.+.-.+
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 67788999999999999876663
No 471
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=87.91 E-value=1.1 Score=34.17 Aligned_cols=42 Identities=24% Similarity=0.180 Sum_probs=29.5
Q ss_pred hhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 182 SRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.+..++-+.|...-..--||-+-|-=|.|||||+|.+...+.
T Consensus 9 ~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 9 EATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 344445444543333456888999999999999999887643
No 472
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=87.89 E-value=0.44 Score=43.66 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
....++|+|..|.|||||++.+..
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999998765
No 473
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=87.85 E-value=0.79 Score=38.65 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=27.0
Q ss_pred HHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 186 EIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 186 ~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.|.++|..+-...+++-|+|..|.||||||-++.-.
T Consensus 48 ~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~ 83 (279)
T COG0468 48 ALDEALGGGLPRGRITEIYGPESSGKTTLALQLVAN 83 (279)
T ss_pred hHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHH
Confidence 344555544455789999999999999999876543
No 474
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=87.72 E-value=1.2 Score=39.25 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=20.4
Q ss_pred CeEEEEEE-cCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIW-GFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~-G~gG~GKTtla~~v~~~~ 222 (227)
..++|+|. .-||+||||+|-.+...+
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~L 129 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYL 129 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHH
Confidence 35788887 679999999998876543
No 475
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=87.68 E-value=0.48 Score=43.70 Aligned_cols=25 Identities=28% Similarity=0.162 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....++|+|..|.|||||++.+..-
T Consensus 348 ~G~~~aivG~sGsGKSTL~~ll~g~ 372 (547)
T PRK10522 348 RGELLFLIGGNGSGKSTLAMLLTGL 372 (547)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999987653
No 476
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=87.67 E-value=0.86 Score=38.27 Aligned_cols=27 Identities=30% Similarity=0.192 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
+..-++|.|..|.|||||.+.+...+.
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 456789999999999999999876543
No 477
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=87.63 E-value=0.44 Score=44.26 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....++|+|..|.|||||++.+..-
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999987654
No 478
>PLN02772 guanylate kinase
Probab=87.62 E-value=0.62 Score=41.17 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+++-|.|..|+||+||++.+..+.
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 46789999999999999999987653
No 479
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=87.58 E-value=0.47 Score=45.12 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
....++|+|..|.|||||++.+..
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998754
No 480
>PRK15494 era GTPase Era; Provisional
Probab=87.58 E-value=0.45 Score=41.23 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..-|.|+|.+|+|||||...+...
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCC
Confidence 446889999999999999987543
No 481
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.54 E-value=0.83 Score=39.31 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
....|+-++|..|+||||-...+.+.++
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~ 164 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLK 164 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHH
Confidence 3478999999999999998887777643
No 482
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.51 E-value=1.1 Score=39.92 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
...+|-.+|.-|.||||-|..+.+.+++
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH
Confidence 3578999999999999999988776543
No 483
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=87.47 E-value=0.85 Score=43.83 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
++..|.|.+|.||||+.+.+...+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~ 392 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAW 392 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHH
Confidence 467799999999999999987654
No 484
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=87.47 E-value=0.52 Score=43.56 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....++|+|..|.|||||++.+...
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl 381 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRF 381 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3567899999999999999987654
No 485
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=87.46 E-value=1.3 Score=39.10 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=26.6
Q ss_pred hHHHHHHHhhcC-----CCCeEEEEEE-cCCCchHHHHHHHHHHHh
Q 045657 183 RVKEIESLLGAE-----SKYVYTLGIW-GFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 183 ~~~~~~~~l~~~-----~~~~~~~~i~-G~gG~GKTtla~~v~~~~ 222 (227)
++.++.+.+... .....+|+|. .-||+||||++-.+...+
T Consensus 86 eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~L 131 (387)
T PHA02519 86 QISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWL 131 (387)
T ss_pred HHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHH
Confidence 445555555321 1336888887 559999999998876553
No 486
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=87.44 E-value=0.84 Score=39.92 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=26.0
Q ss_pred ccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHH
Q 045657 179 GVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARA 217 (227)
Q Consensus 179 g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~ 217 (227)
+|..+..-..++|. ++++..|.+.|.+|.|||-||-+
T Consensus 228 prn~eQ~~ALdlLl--d~dI~lV~L~G~AGtGKTlLALa 264 (436)
T COG1875 228 PRNAEQRVALDLLL--DDDIDLVSLGGKAGTGKTLLALA 264 (436)
T ss_pred cccHHHHHHHHHhc--CCCCCeEEeeccCCccHhHHHHH
Confidence 34444444445554 34688899999999999998864
No 487
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=87.40 E-value=0.47 Score=44.01 Aligned_cols=25 Identities=36% Similarity=0.363 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....++|+|..|.|||||++.+..-
T Consensus 340 ~G~~~~ivG~sGsGKSTLl~ll~g~ 364 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLIQRH 364 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3568999999999999999987654
No 488
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=87.35 E-value=0.62 Score=40.14 Aligned_cols=22 Identities=45% Similarity=0.561 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 045657 201 LGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 201 ~~i~G~gG~GKTtla~~v~~~~ 222 (227)
+-|.|-.|.||||+++++.+.+
T Consensus 147 ilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 147 IVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999987764
No 489
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=87.28 E-value=1.1 Score=37.05 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=36.1
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
-+.||.+.-.+++...+....=+.+ |.++|-.|.|||||..-.|..
T Consensus 24 lgyvGidtI~~Qm~~k~mk~GF~FN-IMVVgqSglgkstlinTlf~s 69 (336)
T KOG1547|consen 24 LGYVGIDTIIEQMRKKTMKTGFDFN-IMVVGQSGLGKSTLINTLFKS 69 (336)
T ss_pred cccccHHHHHHHHHHHHHhccCceE-EEEEecCCCCchhhHHHHHHH
Confidence 4789999999999877664443443 457899999999999988765
No 490
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=87.26 E-value=0.63 Score=42.58 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=29.8
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
..++.|...-++.+.-.+. +...+.+.|..|.||||||+.+..
T Consensus 191 ~~dv~Gq~~~~~al~~aa~----~g~~vlliG~pGsGKTtlar~l~~ 233 (499)
T TIGR00368 191 LKDIKGQQHAKRALEIAAA----GGHNLLLFGPPGSGKTMLASRLQG 233 (499)
T ss_pred HHHhcCcHHHHhhhhhhcc----CCCEEEEEecCCCCHHHHHHHHhc
Confidence 3566776655544433332 335688899999999999998875
No 491
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=87.19 E-value=0.63 Score=38.64 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..+|-|=|..|+||||+|..+.+++.
T Consensus 89 p~IILIGGasGVGkStIA~ElA~rLg 114 (299)
T COG2074 89 PLIILIGGASGVGKSTIAGELARRLG 114 (299)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHcC
Confidence 45666669999999999999998843
No 492
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=87.10 E-value=0.88 Score=37.88 Aligned_cols=47 Identities=26% Similarity=0.461 Sum_probs=32.8
Q ss_pred Ccccc-cchhHHHHHHHhhcCC-----------CCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 175 NQLVG-VESRVKEIESLLGAES-----------KYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 175 ~~~~g-~~~~~~~~~~~l~~~~-----------~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
-.++| .+.+.+++.+.+...- .+..=+-++|..|.|||-||++|++.
T Consensus 146 YeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh 204 (404)
T KOG0728|consen 146 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 204 (404)
T ss_pred HHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh
Confidence 45665 4667777766654321 22344557899999999999999986
No 493
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=87.08 E-value=1.4 Score=39.18 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=20.1
Q ss_pred CeEEEEEE-cCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIW-GFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~-G~gG~GKTtla~~v~~~ 221 (227)
...+|+|. .-||+||||+|-.+...
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~ 145 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQY 145 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHH
Confidence 45788888 56999999999876654
No 494
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=87.00 E-value=0.96 Score=37.15 Aligned_cols=27 Identities=30% Similarity=0.258 Sum_probs=24.3
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 195 SKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 195 ~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
++.-+.+|+.|-+|.||+|++.+|-++
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~a 142 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNA 142 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhh
Confidence 456789999999999999999999886
No 495
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=86.93 E-value=0.54 Score=43.81 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
....++|+|..|.|||||++.+..
T Consensus 360 ~G~~~~ivG~sGsGKSTL~~ll~g 383 (585)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLLQR 383 (585)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcc
Confidence 456899999999999999998754
No 496
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=86.91 E-value=0.66 Score=45.20 Aligned_cols=25 Identities=20% Similarity=0.456 Sum_probs=22.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.+|+|-|.+|.||||+|+.+...+.
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~ 59 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLG 59 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999988754
No 497
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=86.88 E-value=0.59 Score=43.29 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....++|+|..|.|||||++.+..-
T Consensus 365 ~Ge~i~IvG~sGsGKSTLlklL~gl 389 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLLLRF 389 (576)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4567999999999999999988764
No 498
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=86.85 E-value=0.55 Score=43.69 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....++|+|..|.|||||++.+..-
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL~gl 390 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLLMGY 390 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999988654
No 499
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=86.68 E-value=0.47 Score=43.35 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.+-.||+|.+|.||||+.+++|.+
T Consensus 101 g~rygLiG~nG~Gkst~L~~i~~~ 124 (614)
T KOG0927|consen 101 GRRYGLIGPNGSGKSTFLRAIAGR 124 (614)
T ss_pred CceEEEEcCCCCcHhHHHHHHhcC
Confidence 456899999999999999999986
No 500
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=86.66 E-value=0.46 Score=42.59 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.|--|++|..|.|||||.++|..+
T Consensus 290 GRRYGLVGPNG~GKTTLLkHIa~R 313 (807)
T KOG0066|consen 290 GRRYGLVGPNGMGKTTLLKHIAAR 313 (807)
T ss_pred cceecccCCCCCchHHHHHHHHhh
Confidence 356789999999999999999887
Done!