Query 045657
Match_columns 227
No_of_seqs 176 out of 2059
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 06:50:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 2.9E-44 9.9E-49 283.2 7.9 158 4-163 23-182 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 9.1E-44 3.1E-48 275.9 5.9 151 9-161 1-152 (176)
3 3h16_A TIR protein; bacteria T 100.0 2E-32 6.7E-37 209.9 6.2 121 11-132 15-136 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.9 1.3E-28 4.6E-33 186.6 1.0 140 8-149 2-145 (146)
5 2js7_A Myeloid differentiation 99.9 1.8E-24 6E-29 166.4 5.1 101 11-113 11-116 (160)
6 2j67_A TOLL like receptor 10; 99.9 1.5E-24 5E-29 169.4 4.1 101 10-112 29-134 (178)
7 1fyx_A TOLL-like receptor 2; b 99.9 6.6E-25 2.3E-29 167.0 1.5 97 13-111 2-103 (149)
8 1t3g_A X-linked interleukin-1 99.9 1.1E-23 3.8E-28 161.7 6.4 99 15-113 1-113 (159)
9 3j0a_A TOLL-like receptor 5; m 99.7 4.9E-18 1.7E-22 161.0 6.6 102 11-114 665-774 (844)
10 2a5y_B CED-4; apoptosis; HET: 99.0 1.8E-10 6.1E-15 104.3 5.1 50 178-227 131-185 (549)
11 3sfz_A APAF-1, apoptotic pepti 98.8 1.7E-09 5.8E-14 105.4 5.3 52 170-221 119-170 (1249)
12 1z6t_A APAF-1, apoptotic prote 98.8 2.5E-09 8.6E-14 97.2 5.1 50 172-221 121-170 (591)
13 1vt4_I APAF-1 related killer D 98.6 2E-08 6.9E-13 96.0 4.4 51 176-227 129-181 (1221)
14 2qen_A Walker-type ATPase; unk 98.0 5.3E-06 1.8E-10 69.7 5.1 46 172-221 9-54 (350)
15 1w5s_A Origin recognition comp 98.0 6.4E-06 2.2E-10 71.0 5.5 50 174-223 21-77 (412)
16 1eiw_A Hypothetical protein MT 98.0 4.6E-06 1.6E-10 59.3 3.5 72 15-109 3-74 (111)
17 2qby_A CDC6 homolog 1, cell di 97.9 8E-06 2.7E-10 69.5 4.8 51 173-223 18-70 (386)
18 1jbk_A CLPB protein; beta barr 97.9 2.1E-05 7.3E-10 59.8 5.9 47 174-222 21-67 (195)
19 1njg_A DNA polymerase III subu 97.8 2.7E-05 9.3E-10 61.3 6.3 49 174-223 22-70 (250)
20 2qby_B CDC6 homolog 3, cell di 97.8 2.4E-05 8.3E-10 66.7 5.6 49 174-222 19-69 (384)
21 2chg_A Replication factor C sm 97.8 4.3E-05 1.5E-09 59.5 6.2 47 174-222 16-62 (226)
22 2v1u_A Cell division control p 97.7 2.2E-05 7.5E-10 66.8 4.6 49 174-222 18-68 (387)
23 2p65_A Hypothetical protein PF 97.7 4E-05 1.4E-09 58.1 5.4 47 174-222 21-67 (187)
24 1fnn_A CDC6P, cell division co 97.6 7E-05 2.4E-09 63.8 6.0 50 174-223 16-69 (389)
25 3n70_A Transport activator; si 97.5 5.8E-05 2E-09 55.9 3.7 46 176-221 2-47 (145)
26 3h4m_A Proteasome-activating n 97.4 0.00011 3.7E-09 60.3 4.4 52 173-224 15-77 (285)
27 1sxj_B Activator 1 37 kDa subu 97.4 0.00021 7.1E-09 59.3 6.2 48 173-222 19-66 (323)
28 3pfi_A Holliday junction ATP-d 97.4 0.00011 3.9E-09 61.7 4.2 53 173-225 27-82 (338)
29 1iqp_A RFCS; clamp loader, ext 97.4 0.00025 8.4E-09 58.9 6.1 47 174-222 24-70 (327)
30 3cf0_A Transitional endoplasmi 97.3 0.00024 8.2E-09 59.1 5.1 51 174-224 14-75 (301)
31 1hqc_A RUVB; extended AAA-ATPa 97.2 0.00013 4.6E-09 60.7 2.9 52 173-224 10-64 (324)
32 1sxj_D Activator 1 41 kDa subu 97.2 0.00048 1.6E-08 57.9 6.2 48 173-222 35-82 (353)
33 3b9p_A CG5977-PA, isoform A; A 97.2 0.00027 9.2E-09 58.2 4.5 51 174-224 20-80 (297)
34 3eie_A Vacuolar protein sortin 97.2 0.00039 1.3E-08 58.3 5.5 53 173-225 16-78 (322)
35 3d8b_A Fidgetin-like protein 1 97.1 0.00033 1.1E-08 59.7 4.4 50 174-223 83-142 (357)
36 1jr3_A DNA polymerase III subu 97.1 0.00069 2.4E-08 57.3 6.1 49 174-223 15-63 (373)
37 1lv7_A FTSH; alpha/beta domain 97.1 0.00054 1.8E-08 55.3 4.9 50 174-223 11-70 (257)
38 2r62_A Cell division protease 97.0 0.00037 1.3E-08 56.5 3.7 52 174-225 10-71 (268)
39 2chq_A Replication factor C sm 97.0 0.00073 2.5E-08 55.8 5.5 47 174-222 16-62 (319)
40 3uk6_A RUVB-like 2; hexameric 97.0 0.00068 2.3E-08 57.4 5.4 50 174-223 43-95 (368)
41 3co5_A Putative two-component 97.0 8.2E-05 2.8E-09 55.0 -0.4 47 175-221 4-50 (143)
42 3syl_A Protein CBBX; photosynt 97.0 0.00054 1.9E-08 56.6 4.3 47 176-222 32-91 (309)
43 1sxj_A Activator 1 95 kDa subu 97.0 0.00084 2.9E-08 60.1 5.8 51 172-222 36-101 (516)
44 3pxg_A Negative regulator of g 96.9 0.00098 3.4E-08 58.9 5.7 47 174-222 179-225 (468)
45 1in4_A RUVB, holliday junction 96.9 0.00065 2.2E-08 57.3 4.4 50 174-223 24-76 (334)
46 3te6_A Regulatory protein SIR3 96.9 0.00052 1.8E-08 57.7 3.6 48 176-223 21-70 (318)
47 1sxj_E Activator 1 40 kDa subu 96.9 0.00078 2.7E-08 56.8 4.8 47 174-222 13-60 (354)
48 3pvs_A Replication-associated 96.9 0.0008 2.7E-08 59.2 4.9 50 173-224 24-76 (447)
49 3ec2_A DNA replication protein 96.9 0.00074 2.5E-08 51.4 4.2 42 182-223 21-63 (180)
50 2w58_A DNAI, primosome compone 96.9 0.001 3.5E-08 51.5 5.0 25 199-223 55-79 (202)
51 1ofh_A ATP-dependent HSL prote 96.9 0.00054 1.8E-08 56.4 3.5 50 175-224 15-76 (310)
52 1xwi_A SKD1 protein; VPS4B, AA 96.9 0.001 3.5E-08 55.8 5.3 49 174-222 11-69 (322)
53 2qp9_X Vacuolar protein sortin 96.9 0.001 3.5E-08 56.7 5.2 51 174-224 50-110 (355)
54 3hws_A ATP-dependent CLP prote 96.8 0.001 3.4E-08 56.7 4.7 49 176-224 16-77 (363)
55 3vfd_A Spastin; ATPase, microt 96.8 0.001 3.5E-08 57.2 4.7 52 173-224 113-174 (389)
56 3bos_A Putative DNA replicatio 96.7 0.0025 8.6E-08 50.1 6.1 48 174-223 27-77 (242)
57 1d2n_A N-ethylmaleimide-sensit 96.7 0.0022 7.4E-08 52.2 5.6 51 174-224 32-90 (272)
58 4fcw_A Chaperone protein CLPB; 96.7 0.0012 4E-08 54.6 3.9 48 175-222 17-71 (311)
59 3pxi_A Negative regulator of g 96.6 0.0021 7.2E-08 60.1 5.7 47 174-222 179-225 (758)
60 3hu3_A Transitional endoplasmi 96.6 0.0013 4.3E-08 58.6 3.9 50 175-224 204-264 (489)
61 3u61_B DNA polymerase accessor 96.6 0.0021 7.1E-08 53.6 5.0 51 172-223 23-73 (324)
62 1odf_A YGR205W, hypothetical 3 96.6 0.003 1E-07 52.3 5.9 28 195-222 28-55 (290)
63 2zan_A Vacuolar protein sortin 96.6 0.0019 6.4E-08 56.7 4.5 50 173-222 132-191 (444)
64 1ypw_A Transitional endoplasmi 96.5 0.0014 4.9E-08 61.7 3.9 49 175-223 204-263 (806)
65 1sxj_C Activator 1 40 kDa subu 96.5 0.0037 1.3E-07 52.6 6.0 47 174-222 24-70 (340)
66 1ixz_A ATP-dependent metallopr 96.5 0.0023 7.8E-08 51.4 4.3 50 174-223 15-74 (254)
67 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0034 1.2E-07 50.3 5.4 27 198-224 39-65 (262)
68 4b4t_K 26S protease regulatory 96.5 0.0033 1.1E-07 55.0 5.4 53 173-225 170-233 (428)
69 4b4t_L 26S protease subunit RP 96.4 0.0038 1.3E-07 54.6 5.5 52 174-225 180-242 (437)
70 1l8q_A Chromosomal replication 96.4 0.004 1.4E-07 51.9 5.5 38 185-222 24-61 (324)
71 2c9o_A RUVB-like 1; hexameric 96.4 0.0035 1.2E-07 55.1 5.3 50 174-223 36-88 (456)
72 1iy2_A ATP-dependent metallopr 96.4 0.0028 9.7E-08 51.7 4.4 51 173-223 38-98 (278)
73 3hyn_A Putative signal transdu 96.4 0.017 5.9E-07 44.1 8.2 91 16-111 5-118 (189)
74 1r6b_X CLPA protein; AAA+, N-t 96.3 0.0039 1.3E-07 58.2 5.6 47 174-222 185-231 (758)
75 1um8_A ATP-dependent CLP prote 96.3 0.0032 1.1E-07 53.7 4.7 26 199-224 73-98 (376)
76 2ce7_A Cell division protein F 96.3 0.0037 1.3E-07 55.4 5.1 50 175-224 16-75 (476)
77 1qvr_A CLPB protein; coiled co 96.3 0.0031 1E-07 59.8 4.8 48 173-222 168-215 (854)
78 4b4t_J 26S protease regulatory 96.3 0.0035 1.2E-07 54.3 4.7 53 173-225 146-209 (405)
79 2r44_A Uncharacterized protein 96.3 0.0032 1.1E-07 52.6 4.4 46 174-223 26-71 (331)
80 4b4t_M 26S protease regulatory 96.3 0.0044 1.5E-07 54.2 5.3 52 174-225 180-242 (434)
81 3t15_A Ribulose bisphosphate c 96.3 0.003 1E-07 52.2 3.9 29 198-226 36-64 (293)
82 4b4t_H 26S protease regulatory 96.2 0.0046 1.6E-07 54.4 5.1 51 175-225 209-270 (467)
83 2x8a_A Nuclear valosin-contain 96.2 0.0049 1.7E-07 50.5 4.8 48 175-223 10-69 (274)
84 2kjq_A DNAA-related protein; s 96.0 0.0037 1.3E-07 46.4 2.8 26 197-222 35-60 (149)
85 2z4s_A Chromosomal replication 95.9 0.0073 2.5E-07 52.9 4.7 26 198-223 130-155 (440)
86 2dhr_A FTSH; AAA+ protein, hex 95.8 0.0065 2.2E-07 54.2 4.2 51 173-223 29-89 (499)
87 4b4t_I 26S protease regulatory 95.8 0.01 3.6E-07 51.7 5.3 52 174-225 181-243 (437)
88 3nwj_A ATSK2; P loop, shikimat 95.8 0.0042 1.4E-07 50.3 2.5 25 199-223 49-73 (250)
89 3p32_A Probable GTPase RV1496/ 95.8 0.014 4.9E-07 49.5 5.9 39 184-222 65-103 (355)
90 1htw_A HI0065; nucleotide-bind 95.8 0.013 4.3E-07 44.0 5.0 27 196-222 31-57 (158)
91 3e70_C DPA, signal recognition 95.7 0.013 4.4E-07 49.4 5.4 26 197-222 128-153 (328)
92 3aez_A Pantothenate kinase; tr 95.7 0.0091 3.1E-07 49.9 4.2 27 196-222 88-114 (312)
93 1g41_A Heat shock protein HSLU 95.6 0.013 4.3E-07 51.5 5.0 51 175-225 15-77 (444)
94 1zu4_A FTSY; GTPase, signal re 95.5 0.019 6.4E-07 48.2 5.7 26 197-222 104-129 (320)
95 3cf2_A TER ATPase, transitiona 95.5 0.0078 2.7E-07 56.6 3.7 51 175-225 204-265 (806)
96 1g8p_A Magnesium-chelatase 38 95.5 0.0096 3.3E-07 49.8 3.7 47 175-223 24-70 (350)
97 1gvn_B Zeta; postsegregational 95.4 0.018 6E-07 47.5 5.2 25 198-222 33-57 (287)
98 1vma_A Cell division protein F 95.4 0.021 7.3E-07 47.5 5.5 26 197-222 103-128 (306)
99 3tqc_A Pantothenate kinase; bi 95.4 0.021 7.1E-07 47.9 5.4 27 196-222 90-116 (321)
100 2hf9_A Probable hydrogenase ni 95.4 0.02 6.8E-07 44.7 5.0 25 197-221 37-61 (226)
101 1rj9_A FTSY, signal recognitio 95.3 0.014 4.6E-07 48.7 4.1 26 197-222 101-126 (304)
102 3nbx_X ATPase RAVA; AAA+ ATPas 95.3 0.012 4E-07 52.5 3.9 44 175-222 22-65 (500)
103 2yhs_A FTSY, cell division pro 95.3 0.02 7E-07 50.8 5.4 26 197-222 292-317 (503)
104 3m6a_A ATP-dependent protease 95.3 0.017 5.7E-07 52.0 4.9 49 175-223 81-133 (543)
105 3b9q_A Chloroplast SRP recepto 95.3 0.013 4.5E-07 48.7 3.8 26 197-222 99-124 (302)
106 1sq5_A Pantothenate kinase; P- 95.2 0.015 5.3E-07 48.2 4.1 27 197-223 79-105 (308)
107 3fwy_A Light-independent proto 95.2 0.015 5E-07 48.7 4.0 26 196-221 46-71 (314)
108 3k1j_A LON protease, ATP-depen 95.2 0.016 5.4E-07 52.8 4.4 47 172-222 38-84 (604)
109 1svm_A Large T antigen; AAA+ f 95.2 0.018 6.3E-07 49.4 4.6 29 194-222 165-193 (377)
110 2f6r_A COA synthase, bifunctio 95.2 0.013 4.3E-07 48.1 3.4 23 197-219 74-96 (281)
111 2p5t_B PEZT; postsegregational 95.2 0.013 4.4E-07 47.2 3.4 26 198-223 32-57 (253)
112 3pxi_A Negative regulator of g 95.1 0.018 6.3E-07 53.7 4.8 48 175-222 491-545 (758)
113 2qgz_A Helicase loader, putati 95.1 0.023 8E-07 47.2 4.8 40 184-223 137-177 (308)
114 2px0_A Flagellar biosynthesis 95.1 0.014 4.7E-07 48.4 3.4 25 198-222 105-129 (296)
115 2xxa_A Signal recognition part 95.1 0.029 9.8E-07 49.1 5.5 26 197-222 99-124 (433)
116 1r6b_X CLPA protein; AAA+, N-t 95.0 0.015 5E-07 54.3 3.7 49 175-223 458-513 (758)
117 1tue_A Replication protein E1; 94.9 0.026 8.8E-07 44.4 4.4 39 184-223 45-83 (212)
118 2og2_A Putative signal recogni 94.9 0.019 6.4E-07 49.0 3.8 26 197-222 156-181 (359)
119 1j8m_F SRP54, signal recogniti 94.9 0.027 9.3E-07 46.7 4.8 25 198-222 98-122 (297)
120 3tif_A Uncharacterized ABC tra 94.9 0.015 5.2E-07 46.5 3.1 24 197-220 30-53 (235)
121 3kl4_A SRP54, signal recogniti 94.8 0.031 1E-06 48.9 4.9 26 197-222 96-121 (433)
122 2cbz_A Multidrug resistance-as 94.7 0.018 6.1E-07 46.1 3.1 23 198-220 31-53 (237)
123 1b0u_A Histidine permease; ABC 94.7 0.018 6.1E-07 46.8 3.1 24 197-220 31-54 (262)
124 1g6h_A High-affinity branched- 94.6 0.019 6.4E-07 46.5 3.1 23 198-220 33-55 (257)
125 1puj_A YLQF, conserved hypothe 94.6 0.43 1.5E-05 39.0 11.3 24 198-221 120-143 (282)
126 3gfo_A Cobalt import ATP-bindi 94.6 0.019 6.5E-07 47.1 3.1 23 198-220 34-56 (275)
127 2zu0_C Probable ATP-dependent 94.6 0.02 6.9E-07 46.6 3.2 24 197-220 45-68 (267)
128 4g1u_C Hemin import ATP-bindin 94.6 0.019 6.5E-07 46.8 3.0 24 197-220 36-59 (266)
129 1ji0_A ABC transporter; ATP bi 94.6 0.02 6.8E-07 45.9 3.1 23 198-220 32-54 (240)
130 3dm5_A SRP54, signal recogniti 94.6 0.051 1.8E-06 47.6 5.9 27 197-223 99-125 (443)
131 2v9p_A Replication protein E1; 94.6 0.033 1.1E-06 46.4 4.4 29 194-222 122-150 (305)
132 2olj_A Amino acid ABC transpor 94.5 0.02 7E-07 46.6 3.1 24 197-220 49-72 (263)
133 2pze_A Cystic fibrosis transme 94.5 0.022 7.4E-07 45.3 3.1 24 198-221 34-57 (229)
134 2j37_W Signal recognition part 94.5 0.046 1.6E-06 48.7 5.4 26 197-222 100-125 (504)
135 1ls1_A Signal recognition part 94.4 0.03 1E-06 46.3 3.9 26 197-222 97-122 (295)
136 2qm8_A GTPase/ATPase; G protei 94.4 0.046 1.6E-06 46.0 5.1 35 187-221 44-78 (337)
137 3hr8_A Protein RECA; alpha and 94.4 0.12 4E-06 44.0 7.7 41 182-222 44-85 (356)
138 2ff7_A Alpha-hemolysin translo 94.4 0.023 7.8E-07 45.8 3.1 23 198-220 35-57 (247)
139 1cr0_A DNA primase/helicase; R 94.4 0.036 1.2E-06 45.4 4.3 26 197-222 34-59 (296)
140 2p67_A LAO/AO transport system 94.4 0.051 1.8E-06 45.8 5.3 31 191-221 49-79 (341)
141 1vpl_A ABC transporter, ATP-bi 94.4 0.023 7.9E-07 46.0 3.1 24 197-220 40-63 (256)
142 1qvr_A CLPB protein; coiled co 94.4 0.03 1E-06 53.1 4.2 47 176-222 559-612 (854)
143 2v3c_C SRP54, signal recogniti 94.4 0.029 1E-06 49.0 3.9 25 198-222 99-123 (432)
144 1pzn_A RAD51, DNA repair and r 94.4 0.032 1.1E-06 47.2 4.1 37 186-222 119-155 (349)
145 2ghi_A Transport protein; mult 94.3 0.024 8.2E-07 46.0 3.1 24 197-220 45-68 (260)
146 2yz2_A Putative ABC transporte 94.3 0.024 8.4E-07 46.1 3.1 24 197-220 32-55 (266)
147 3end_A Light-independent proto 94.3 0.034 1.2E-06 45.8 4.0 26 197-222 40-65 (307)
148 1sgw_A Putative ABC transporte 94.3 0.02 6.9E-07 45.1 2.5 23 198-220 35-57 (214)
149 2zr9_A Protein RECA, recombina 94.3 0.076 2.6E-06 44.9 6.2 40 182-221 44-84 (349)
150 2ixe_A Antigen peptide transpo 94.3 0.025 8.6E-07 46.2 3.1 24 197-220 44-67 (271)
151 2ihy_A ABC transporter, ATP-bi 94.3 0.025 8.6E-07 46.4 3.1 23 198-220 47-69 (279)
152 3cr8_A Sulfate adenylyltranfer 94.2 0.046 1.6E-06 49.3 4.9 27 197-223 368-394 (552)
153 2nq2_C Hypothetical ABC transp 94.2 0.028 9.5E-07 45.5 3.1 23 198-220 31-53 (253)
154 1ypw_A Transitional endoplasmi 94.1 0.029 9.9E-07 52.9 3.5 52 174-225 476-538 (806)
155 1u0j_A DNA replication protein 94.1 0.062 2.1E-06 43.8 5.0 37 185-221 91-127 (267)
156 1g8f_A Sulfate adenylyltransfe 93.9 0.058 2E-06 48.1 4.8 27 197-223 394-420 (511)
157 1lw7_A Transcriptional regulat 93.8 0.042 1.4E-06 46.6 3.7 25 198-222 170-194 (365)
158 3zvl_A Bifunctional polynucleo 93.8 0.026 8.9E-07 49.0 2.4 25 197-221 257-281 (416)
159 3nh6_A ATP-binding cassette SU 93.7 0.032 1.1E-06 46.4 2.8 24 197-220 79-102 (306)
160 2ged_A SR-beta, signal recogni 93.7 0.042 1.4E-06 41.5 3.2 24 198-221 48-71 (193)
161 3a8t_A Adenylate isopentenyltr 93.6 0.025 8.5E-07 47.8 1.9 26 198-223 40-65 (339)
162 2vhj_A Ntpase P4, P4; non- hyd 93.6 0.055 1.9E-06 45.5 3.9 24 198-221 123-146 (331)
163 2yv5_A YJEQ protein; hydrolase 93.5 0.072 2.5E-06 44.1 4.5 31 184-219 156-186 (302)
164 1m8p_A Sulfate adenylyltransfe 93.5 0.073 2.5E-06 48.2 4.9 27 197-223 395-421 (573)
165 2bbs_A Cystic fibrosis transme 93.5 0.042 1.4E-06 45.4 3.0 24 197-220 63-86 (290)
166 2axn_A 6-phosphofructo-2-kinas 93.4 0.056 1.9E-06 48.3 4.0 26 197-222 34-59 (520)
167 3tui_C Methionine import ATP-b 93.4 0.046 1.6E-06 46.7 3.2 24 197-220 53-76 (366)
168 3def_A T7I23.11 protein; chlor 93.4 0.1 3.4E-06 42.0 5.1 26 196-221 34-59 (262)
169 2ffh_A Protein (FFH); SRP54, s 93.3 0.067 2.3E-06 46.6 4.2 27 197-223 97-123 (425)
170 1z47_A CYSA, putative ABC-tran 93.3 0.051 1.7E-06 46.2 3.3 23 198-220 41-63 (355)
171 1bif_A 6-phosphofructo-2-kinas 93.2 0.064 2.2E-06 47.2 4.0 25 198-222 39-63 (469)
172 1h65_A Chloroplast outer envel 93.1 0.1 3.5E-06 42.1 4.8 25 197-221 38-62 (270)
173 1tq4_A IIGP1, interferon-induc 93.1 0.045 1.5E-06 47.5 2.7 24 197-220 68-91 (413)
174 1u94_A RECA protein, recombina 92.9 0.17 5.9E-06 42.9 6.1 43 179-221 43-86 (356)
175 1v43_A Sugar-binding transport 92.9 0.061 2.1E-06 46.0 3.2 24 197-220 36-59 (372)
176 2www_A Methylmalonic aciduria 92.9 0.079 2.7E-06 44.8 3.9 26 196-221 72-97 (349)
177 1oxx_K GLCV, glucose, ABC tran 92.9 0.045 1.6E-06 46.5 2.4 23 198-220 31-53 (353)
178 3lda_A DNA repair protein RAD5 92.9 0.061 2.1E-06 46.5 3.3 37 183-219 163-199 (400)
179 2obl_A ESCN; ATPase, hydrolase 92.6 0.075 2.6E-06 45.0 3.3 26 197-222 70-95 (347)
180 3bh0_A DNAB-like replicative h 92.5 0.16 5.5E-06 42.2 5.2 37 184-221 55-91 (315)
181 2gks_A Bifunctional SAT/APS ki 92.4 0.16 5.6E-06 45.6 5.5 27 197-223 371-397 (546)
182 3gd7_A Fusion complex of cysti 92.4 0.076 2.6E-06 45.7 3.2 24 197-220 46-69 (390)
183 2ewv_A Twitching motility prot 92.4 0.1 3.6E-06 44.5 4.0 26 197-222 135-160 (372)
184 1yqt_A RNAse L inhibitor; ATP- 92.4 0.075 2.6E-06 47.7 3.2 75 37-111 140-217 (538)
185 1u0l_A Probable GTPase ENGC; p 92.4 0.13 4.5E-06 42.4 4.5 32 184-220 160-191 (301)
186 1x6v_B Bifunctional 3'-phospho 92.4 0.097 3.3E-06 47.9 4.0 26 197-222 51-76 (630)
187 2npi_A Protein CLP1; CLP1-PCF1 92.4 0.065 2.2E-06 47.2 2.8 25 197-221 137-161 (460)
188 3jvv_A Twitching mobility prot 92.3 0.1 3.4E-06 44.4 3.7 24 199-222 124-147 (356)
189 1v5w_A DMC1, meiotic recombina 92.1 0.16 5.6E-06 42.7 4.9 38 184-221 108-145 (343)
190 2gza_A Type IV secretion syste 92.1 0.06 2.1E-06 45.7 2.2 24 198-221 175-198 (361)
191 3ozx_A RNAse L inhibitor; ATP 92.0 0.073 2.5E-06 47.8 2.7 73 38-111 121-196 (538)
192 2qag_B Septin-6, protein NEDD5 92.0 0.078 2.7E-06 46.2 2.8 20 201-220 45-64 (427)
193 1yqt_A RNAse L inhibitor; ATP- 92.0 0.089 3E-06 47.2 3.2 25 197-221 46-70 (538)
194 2rcn_A Probable GTPase ENGC; Y 91.9 0.097 3.3E-06 44.5 3.2 22 199-220 216-237 (358)
195 3fkq_A NTRC-like two-domain pr 91.9 0.15 5.3E-06 43.3 4.5 27 196-222 141-168 (373)
196 2j1l_A RHO-related GTP-binding 91.7 0.079 2.7E-06 41.0 2.3 24 198-221 34-57 (214)
197 3bk7_A ABC transporter ATP-bin 91.7 0.1 3.4E-06 47.6 3.2 74 38-111 211-287 (607)
198 2qmh_A HPR kinase/phosphorylas 91.6 0.093 3.2E-06 41.0 2.5 24 198-221 34-57 (205)
199 3upu_A ATP-dependent DNA helic 91.6 0.21 7.1E-06 43.7 5.1 23 200-222 47-69 (459)
200 2dpy_A FLII, flagellum-specifi 91.5 0.11 3.9E-06 45.3 3.3 26 197-222 156-181 (438)
201 3ez2_A Plasmid partition prote 91.5 0.27 9.1E-06 42.1 5.6 27 196-222 106-133 (398)
202 3j16_B RLI1P; ribosome recycli 91.5 0.11 3.7E-06 47.4 3.2 76 36-111 202-280 (608)
203 1t9h_A YLOQ, probable GTPase E 91.4 0.061 2.1E-06 44.8 1.4 22 199-220 174-195 (307)
204 1f2t_A RAD50 ABC-ATPase; DNA d 91.3 0.16 5.4E-06 37.4 3.5 23 199-221 24-46 (149)
205 2r6a_A DNAB helicase, replicat 91.2 0.23 7.8E-06 43.4 5.0 43 179-222 185-227 (454)
206 2pt7_A CAG-ALFA; ATPase, prote 91.2 0.083 2.8E-06 44.4 2.0 23 199-221 172-194 (330)
207 3f9v_A Minichromosome maintena 91.1 0.054 1.9E-06 49.2 0.9 48 174-221 294-350 (595)
208 1p9r_A General secretion pathw 91.1 0.17 5.8E-06 43.9 3.9 26 197-222 166-191 (418)
209 3j16_B RLI1P; ribosome recycli 91.1 0.13 4.3E-06 47.0 3.2 25 197-221 102-126 (608)
210 3cf2_A TER ATPase, transitiona 91.0 0.11 3.9E-06 48.7 2.9 51 175-225 477-538 (806)
211 2g3y_A GTP-binding protein GEM 91.0 0.13 4.4E-06 40.2 2.8 22 198-219 37-58 (211)
212 3bk7_A ABC transporter ATP-bin 90.9 0.12 4.2E-06 47.0 3.1 25 197-221 116-140 (607)
213 2z43_A DNA repair and recombin 90.8 0.15 5.1E-06 42.5 3.3 37 185-221 94-130 (324)
214 2qag_C Septin-7; cell cycle, c 90.8 0.097 3.3E-06 45.5 2.1 21 201-221 34-54 (418)
215 1tf7_A KAIC; homohexamer, hexa 90.8 0.17 5.7E-06 45.1 3.7 36 187-222 270-305 (525)
216 2i1q_A DNA repair and recombin 90.7 0.19 6.6E-06 41.6 3.8 38 184-221 84-121 (322)
217 3b5x_A Lipid A export ATP-bind 90.2 0.15 5.1E-06 46.1 2.9 25 197-221 368-392 (582)
218 3b60_A Lipid A export ATP-bind 90.0 0.16 5.6E-06 45.8 3.0 24 197-220 368-391 (582)
219 1xp8_A RECA protein, recombina 89.9 0.79 2.7E-05 38.9 7.1 41 181-221 56-97 (366)
220 2q6t_A DNAB replication FORK h 89.9 0.3 1E-05 42.5 4.5 44 178-222 181-224 (444)
221 2oze_A ORF delta'; para, walke 89.9 0.16 5.5E-06 41.4 2.6 25 198-222 34-61 (298)
222 1tf7_A KAIC; homohexamer, hexa 89.9 0.17 5.9E-06 45.1 3.0 22 197-218 38-59 (525)
223 1mky_A Probable GTP-binding pr 89.7 0.4 1.4E-05 41.6 5.2 48 174-221 147-203 (439)
224 2qag_A Septin-2, protein NEDD5 89.7 0.13 4.6E-06 43.6 2.0 21 200-220 39-59 (361)
225 3cio_A ETK, tyrosine-protein k 89.6 0.44 1.5E-05 39.2 5.1 27 196-222 102-129 (299)
226 1ny5_A Transcriptional regulat 89.6 0.28 9.5E-06 42.0 4.0 45 176-221 138-183 (387)
227 3e1s_A Exodeoxyribonuclease V, 89.4 0.41 1.4E-05 43.3 5.1 24 199-222 205-228 (574)
228 3cnl_A YLQF, putative uncharac 89.3 0.35 1.2E-05 39.0 4.2 35 184-221 88-122 (262)
229 4a1f_A DNAB helicase, replicat 89.3 0.39 1.3E-05 40.5 4.5 37 184-221 33-69 (338)
230 2e87_A Hypothetical protein PH 89.2 0.23 7.7E-06 41.9 3.1 24 197-220 166-189 (357)
231 3bgw_A DNAB-like replicative h 89.2 0.4 1.4E-05 41.9 4.7 44 178-222 178-221 (444)
232 2qtf_A Protein HFLX, GTP-bindi 89.1 0.22 7.5E-06 42.4 3.0 25 197-221 178-202 (364)
233 2yl4_A ATP-binding cassette SU 88.7 0.17 5.7E-06 45.9 2.1 24 197-220 369-392 (595)
234 1sky_E F1-ATPase, F1-ATP synth 88.5 0.27 9.3E-06 43.3 3.2 24 200-223 153-176 (473)
235 3qf4_B Uncharacterized ABC tra 88.4 0.19 6.5E-06 45.6 2.2 24 197-220 380-403 (598)
236 3bfv_A CAPA1, CAPB2, membrane 88.4 0.65 2.2E-05 37.6 5.2 27 196-222 80-107 (271)
237 2oap_1 GSPE-2, type II secreti 88.4 0.24 8.1E-06 44.2 2.7 23 199-221 261-283 (511)
238 1f5n_A Interferon-induced guan 88.3 0.5 1.7E-05 42.9 4.8 32 190-221 30-61 (592)
239 4aby_A DNA repair protein RECN 88.1 0.14 4.7E-06 43.9 1.1 22 200-221 62-83 (415)
240 1udx_A The GTP-binding protein 88.1 0.22 7.4E-06 43.3 2.3 23 198-220 157-179 (416)
241 3dzd_A Transcriptional regulat 88.0 0.31 1.1E-05 41.4 3.2 47 175-221 129-175 (368)
242 2iw3_A Elongation factor 3A; a 87.9 0.3 1E-05 46.9 3.3 23 198-220 461-483 (986)
243 4a82_A Cystic fibrosis transme 87.9 0.17 5.8E-06 45.7 1.5 24 197-220 366-389 (578)
244 3qf4_A ABC transporter, ATP-bi 87.8 0.21 7.1E-06 45.3 2.0 24 197-220 368-391 (587)
245 2wkq_A NPH1-1, RAS-related C3 87.7 0.44 1.5E-05 39.0 3.9 24 198-221 155-178 (332)
246 3ice_A Transcription terminati 87.7 0.38 1.3E-05 41.5 3.5 25 198-222 174-198 (422)
247 1zcb_A G alpha I/13; GTP-bindi 87.6 0.3 1E-05 41.5 2.8 21 198-218 33-53 (362)
248 2hjg_A GTP-binding protein ENG 87.5 0.79 2.7E-05 39.7 5.5 48 174-221 146-198 (436)
249 3q5d_A Atlastin-1; G protein, 86.7 0.88 3E-05 39.8 5.4 37 185-221 51-90 (447)
250 2iw3_A Elongation factor 3A; a 86.7 0.29 9.8E-06 47.0 2.4 74 35-111 527-604 (986)
251 2j69_A Bacterial dynamin-like 86.6 0.62 2.1E-05 43.1 4.5 25 197-221 68-92 (695)
252 1q57_A DNA primase/helicase; d 86.4 0.62 2.1E-05 41.1 4.3 38 184-222 229-266 (503)
253 3la6_A Tyrosine-protein kinase 86.4 1.1 3.9E-05 36.5 5.6 27 196-222 90-117 (286)
254 3o47_A ADP-ribosylation factor 86.0 0.34 1.2E-05 40.4 2.2 20 200-219 167-186 (329)
255 3szr_A Interferon-induced GTP- 85.8 0.42 1.4E-05 43.4 2.9 24 197-220 44-67 (608)
256 1of1_A Thymidine kinase; trans 85.3 0.45 1.6E-05 40.6 2.7 27 197-223 48-74 (376)
257 3dpu_A RAB family protein; roc 85.2 0.45 1.5E-05 42.4 2.8 24 198-221 41-64 (535)
258 3ez9_A Para; DNA binding, wing 84.9 0.39 1.3E-05 41.1 2.2 28 196-223 109-137 (403)
259 4ido_A Atlastin-1; GTPase, GTP 84.7 1.5 5.1E-05 38.4 5.8 39 184-222 50-91 (457)
260 3g5u_A MCG1178, multidrug resi 84.7 0.46 1.6E-05 47.1 2.8 24 197-220 1058-1081(1284)
261 1w36_D RECD, exodeoxyribonucle 84.5 1.3 4.4E-05 40.2 5.5 36 182-222 153-188 (608)
262 1ko7_A HPR kinase/phosphatase; 84.4 0.65 2.2E-05 38.7 3.2 23 199-221 145-167 (314)
263 3ux8_A Excinuclease ABC, A sub 84.0 0.35 1.2E-05 44.4 1.5 61 52-112 202-264 (670)
264 2f62_A Nucleoside 2-deoxyribos 83.9 3 0.0001 31.0 6.5 69 30-98 26-98 (161)
265 3ec1_A YQEH GTPase; atnos1, at 83.3 1.1 3.6E-05 38.1 4.2 43 174-221 143-185 (369)
266 3t34_A Dynamin-related protein 83.3 0.62 2.1E-05 39.2 2.7 24 197-220 33-56 (360)
267 3vkw_A Replicase large subunit 83.3 1 3.5E-05 39.3 4.1 24 196-219 159-182 (446)
268 1lnz_A SPO0B-associated GTP-bi 83.0 0.52 1.8E-05 39.7 2.1 22 199-220 159-180 (342)
269 3ux8_A Excinuclease ABC, A sub 82.5 0.58 2E-05 42.9 2.4 19 197-215 43-61 (670)
270 1ewq_A DNA mismatch repair pro 82.5 0.72 2.5E-05 43.1 3.0 23 198-220 576-598 (765)
271 3geh_A MNME, tRNA modification 82.2 0.85 2.9E-05 40.0 3.2 22 200-221 226-247 (462)
272 2gk6_A Regulator of nonsense t 82.2 1.6 5.6E-05 39.6 5.2 36 181-221 183-218 (624)
273 3l0i_B RAS-related protein RAB 82.1 0.21 7.1E-06 37.9 -0.7 22 197-218 32-53 (199)
274 4b3f_X DNA-binding protein smu 82.0 1.4 4.7E-05 40.2 4.7 36 181-220 192-228 (646)
275 3h2y_A GTPase family protein; 81.9 1.3 4.5E-05 37.5 4.2 42 175-221 142-183 (368)
276 1wb9_A DNA mismatch repair pro 81.7 0.8 2.7E-05 43.1 3.0 24 197-220 606-629 (800)
277 3l0o_A Transcription terminati 81.1 1.1 3.8E-05 38.7 3.4 25 199-223 176-200 (427)
278 4dcu_A GTP-binding protein ENG 81.1 1.9 6.6E-05 37.4 5.2 43 178-220 170-217 (456)
279 4f4c_A Multidrug resistance pr 81.1 0.41 1.4E-05 47.6 0.8 23 198-220 1105-1127(1321)
280 3g5u_A MCG1178, multidrug resi 80.7 0.74 2.5E-05 45.6 2.5 24 197-220 415-438 (1284)
281 2qpt_A EH domain-containing pr 79.7 0.95 3.2E-05 40.6 2.7 25 197-221 64-88 (550)
282 4ag6_A VIRB4 ATPase, type IV s 79.7 1.3 4.4E-05 37.6 3.5 21 201-221 38-58 (392)
283 2ygr_A Uvrabc system protein A 79.6 0.62 2.1E-05 44.7 1.5 72 40-111 505-582 (993)
284 4f4c_A Multidrug resistance pr 79.5 0.97 3.3E-05 44.9 2.9 23 198-220 444-466 (1321)
285 2vf7_A UVRA2, excinuclease ABC 79.1 0.58 2E-05 44.2 1.2 73 39-111 362-440 (842)
286 3lvq_E ARF-GAP with SH3 domain 79.1 1.2 4.2E-05 39.0 3.2 23 199-221 323-345 (497)
287 3cmu_A Protein RECA, recombina 78.9 1.5 5.1E-05 45.3 4.0 38 184-221 1412-1450(2050)
288 2x2e_A Dynamin-1; nitration, h 78.4 0.79 2.7E-05 38.5 1.7 23 198-220 31-53 (353)
289 3thx_B DNA mismatch repair pro 78.0 1.2 4E-05 42.6 2.9 23 197-219 672-694 (918)
290 2wjy_A Regulator of nonsense t 77.9 2.6 9E-05 39.5 5.2 37 181-222 359-395 (800)
291 1knx_A Probable HPR(Ser) kinas 77.8 1 3.6E-05 37.4 2.2 22 199-220 148-169 (312)
292 3p26_A Elongation factor 1 alp 77.7 1.9 6.4E-05 37.9 4.0 25 197-221 32-56 (483)
293 3thx_A DNA mismatch repair pro 77.7 1.2 4.1E-05 42.6 2.9 22 197-218 661-682 (934)
294 2r6f_A Excinuclease ABC subuni 77.2 0.58 2E-05 44.8 0.5 21 198-218 650-670 (972)
295 3llm_A ATP-dependent RNA helic 76.8 1.4 4.9E-05 34.4 2.7 20 199-218 77-96 (235)
296 2o8b_B DNA mismatch repair pro 76.2 1.4 4.9E-05 42.5 3.0 21 198-218 789-809 (1022)
297 2ck3_D ATP synthase subunit be 75.9 1.9 6.5E-05 38.0 3.4 24 199-222 154-177 (482)
298 3gee_A MNME, tRNA modification 75.7 0.94 3.2E-05 39.9 1.4 22 200-221 235-256 (476)
299 4a9a_A Ribosome-interacting GT 75.5 1.9 6.5E-05 36.8 3.3 25 197-221 71-95 (376)
300 3cmw_A Protein RECA, recombina 75.5 1.8 6.3E-05 43.9 3.6 44 179-222 712-756 (1706)
301 1fx0_B ATP synthase beta chain 74.5 2.2 7.4E-05 37.8 3.4 24 200-223 167-190 (498)
302 2xzl_A ATP-dependent helicase 74.3 3.7 0.00013 38.6 5.2 36 181-221 363-398 (802)
303 3cmu_A Protein RECA, recombina 73.0 2.6 8.8E-05 43.6 4.0 46 177-222 361-407 (2050)
304 1ihu_A Arsenical pump-driving 72.9 3.3 0.00011 37.2 4.3 25 198-222 327-351 (589)
305 3mca_A HBS1, elongation factor 72.8 3.7 0.00013 37.1 4.7 25 196-220 175-199 (592)
306 3cmw_A Protein RECA, recombina 72.6 2.1 7.3E-05 43.5 3.3 24 198-221 1082-1105(1706)
307 3pih_A Uvrabc system protein A 70.7 2.1 7.1E-05 40.9 2.6 74 38-111 446-525 (916)
308 1xzp_A Probable tRNA modificat 70.7 1.1 3.8E-05 39.5 0.7 23 199-221 244-266 (482)
309 4fyk_A Deoxyribonucleoside 5'- 69.7 13 0.00043 27.4 6.2 64 31-98 19-94 (152)
310 3vqt_A RF-3, peptide chain rel 69.4 3.2 0.00011 37.1 3.4 23 197-219 30-52 (548)
311 3izq_1 HBS1P, elongation facto 68.8 2.7 9.1E-05 38.2 2.8 22 198-219 167-188 (611)
312 4ad8_A DNA repair protein RECN 68.7 1.5 5.1E-05 38.8 1.1 21 200-220 62-82 (517)
313 2fz4_A DNA repair protein RAD2 67.1 6.4 0.00022 30.8 4.5 37 180-221 95-131 (237)
314 1ii2_A Phosphoenolpyruvate car 66.5 3 0.0001 37.1 2.6 19 198-216 213-231 (524)
315 2yvq_A Carbamoyl-phosphate syn 66.2 6.8 0.00023 28.3 4.1 61 19-81 27-106 (143)
316 2khz_A C-MYC-responsive protei 65.9 21 0.00072 26.3 6.9 81 14-98 9-103 (165)
317 1ytm_A Phosphoenolpyruvate car 65.6 3.2 0.00011 37.0 2.5 18 199-216 236-253 (532)
318 2olr_A Phosphoenolpyruvate car 65.2 3.3 0.00011 36.9 2.6 19 198-216 241-259 (540)
319 3gqb_B V-type ATP synthase bet 64.8 2.5 8.6E-05 37.0 1.7 22 200-221 149-170 (464)
320 2c61_A A-type ATP synthase non 64.7 2.9 9.8E-05 36.7 2.1 23 200-222 154-176 (469)
321 3vr4_D V-type sodium ATPase su 64.5 2.9 0.0001 36.6 2.1 22 201-222 154-175 (465)
322 3mfy_A V-type ATP synthase alp 64.1 3.7 0.00013 36.9 2.7 23 199-221 228-250 (588)
323 3vr4_A V-type sodium ATPase ca 63.5 4.9 0.00017 36.3 3.3 23 199-221 233-255 (600)
324 1r5b_A Eukaryotic peptide chai 62.8 5 0.00017 35.0 3.3 24 196-219 41-64 (467)
325 3czq_A Putative polyphosphate 62.2 6.1 0.00021 32.6 3.5 26 198-223 86-111 (304)
326 3qq5_A Small GTP-binding prote 62.0 1.9 6.5E-05 37.3 0.4 24 196-219 32-55 (423)
327 1j3b_A ATP-dependent phosphoen 61.9 3.3 0.00011 36.9 1.9 19 198-216 225-243 (529)
328 3gqb_A V-type ATP synthase alp 61.8 4.7 0.00016 36.2 2.9 23 199-221 222-244 (578)
329 1e9r_A Conjugal transfer prote 60.4 6.1 0.00021 33.8 3.4 22 200-221 55-76 (437)
330 4akg_A Glutathione S-transfera 60.1 5 0.00017 42.7 3.2 26 200-225 647-672 (2695)
331 3f8t_A Predicted ATPase involv 59.9 5 0.00017 35.5 2.7 42 174-218 213-258 (506)
332 2vf7_A UVRA2, excinuclease ABC 59.3 4.7 0.00016 38.1 2.6 19 199-217 37-55 (842)
333 2ius_A DNA translocase FTSK; n 59.2 5.3 0.00018 35.5 2.8 21 201-221 170-190 (512)
334 1cip_A Protein (guanine nucleo 59.1 5.6 0.00019 33.4 2.8 18 200-217 34-51 (353)
335 2xau_A PRE-mRNA-splicing facto 57.6 7.6 0.00026 36.2 3.7 33 182-218 97-129 (773)
336 1v95_A Nuclear receptor coacti 57.5 49 0.0017 23.5 7.5 63 11-76 3-67 (130)
337 4ehx_A Tetraacyldisaccharide 4 55.9 9.9 0.00034 31.4 3.8 27 198-224 38-64 (315)
338 1w78_A FOLC bifunctional prote 55.8 16 0.00056 31.1 5.3 40 182-223 33-72 (422)
339 2r6f_A Excinuclease ABC subuni 53.8 5.6 0.00019 38.1 2.1 19 199-217 45-63 (972)
340 2ygr_A Uvrabc system protein A 53.7 5.6 0.00019 38.2 2.1 19 199-217 47-65 (993)
341 3czp_A Putative polyphosphate 53.1 14 0.00048 32.6 4.5 40 184-223 29-68 (500)
342 1azs_C GS-alpha; complex (lyas 51.5 8.5 0.00029 33.0 2.7 18 200-217 42-59 (402)
343 3nrs_A Dihydrofolate:folylpoly 51.5 21 0.00071 30.7 5.3 39 182-222 36-74 (437)
344 1evl_A Threonyl-tRNA synthetas 51.0 38 0.0013 28.6 6.8 58 15-76 297-355 (401)
345 2ck3_A ATP synthase subunit al 49.7 8.6 0.00029 34.1 2.5 24 200-223 164-188 (510)
346 2r9v_A ATP synthase subunit al 49.5 7.7 0.00026 34.4 2.2 22 200-221 177-199 (515)
347 3ehd_A Uncharacterized conserv 49.2 66 0.0023 23.7 7.0 67 31-98 20-97 (162)
348 2qe7_A ATP synthase subunit al 48.7 7.7 0.00026 34.3 2.1 22 200-221 164-186 (502)
349 4g84_A Histidine--tRNA ligase, 48.0 43 0.0015 28.7 6.8 60 14-76 364-424 (464)
350 3zvr_A Dynamin-1; hydrolase, D 47.0 16 0.00056 34.1 4.1 25 197-221 50-74 (772)
351 4g85_A Histidine-tRNA ligase, 46.9 55 0.0019 28.7 7.4 60 14-76 417-477 (517)
352 3avx_A Elongation factor TS, e 46.6 19 0.00065 35.5 4.5 26 196-221 294-319 (1289)
353 3net_A Histidyl-tRNA synthetas 45.3 41 0.0014 29.1 6.2 61 14-78 369-429 (465)
354 1fx0_A ATP synthase alpha chai 45.2 7.7 0.00026 34.4 1.5 22 200-221 165-187 (507)
355 1jbw_A Folylpolyglutamate synt 44.3 20 0.00068 30.6 4.0 39 183-223 24-62 (428)
356 1o5z_A Folylpolyglutamate synt 44.2 23 0.0008 30.4 4.5 38 183-222 37-74 (442)
357 4akg_A Glutathione S-transfera 43.3 15 0.00052 39.2 3.5 23 199-221 924-946 (2695)
358 1wu7_A Histidyl-tRNA synthetas 42.1 52 0.0018 28.0 6.3 57 16-76 332-389 (434)
359 1htt_A Histidyl-tRNA synthetas 42.0 43 0.0015 28.4 5.8 59 14-76 325-386 (423)
360 3vkg_A Dynein heavy chain, cyt 42.0 25 0.00084 38.3 4.8 19 202-220 1650-1668(3245)
361 2vos_A Folylpolyglutamate synt 40.9 24 0.00082 30.8 4.0 39 182-222 48-86 (487)
362 1egw_A MADS box transcription 40.6 12 0.00039 24.2 1.4 33 66-98 36-68 (77)
363 3b6e_A Interferon-induced heli 40.4 16 0.00055 27.2 2.5 36 180-220 35-70 (216)
364 2i4l_A Proline-tRNA ligase; al 39.7 57 0.002 28.1 6.3 59 15-76 364-425 (458)
365 4e51_A Histidine--tRNA ligase; 38.5 57 0.0019 28.3 6.0 63 15-78 353-416 (467)
366 2iut_A DNA translocase FTSK; n 38.0 23 0.00079 31.8 3.5 21 201-221 217-237 (574)
367 3oaa_A ATP synthase subunit al 37.3 15 0.0005 32.6 2.0 36 184-221 150-186 (513)
368 1byr_A Protein (endonuclease); 36.7 94 0.0032 21.7 6.2 28 54-81 10-37 (155)
369 3p57_A Myocyte-specific enhanc 36.6 16 0.00054 24.3 1.6 33 66-98 36-68 (90)
370 4a0g_A Adenosylmethionine-8-am 33.6 31 0.0011 32.4 3.8 27 198-224 34-61 (831)
371 3vkg_A Dynein heavy chain, cyt 32.9 26 0.00089 38.1 3.3 24 201-224 607-630 (3245)
372 1qe0_A Histidyl-tRNA synthetas 32.8 52 0.0018 27.8 4.8 59 14-76 327-386 (420)
373 3lc0_A Histidyl-tRNA synthetas 32.6 1E+02 0.0035 26.6 6.7 60 15-78 360-419 (456)
374 3rhf_A Putative polyphosphate 32.6 43 0.0015 27.3 4.0 26 198-223 75-100 (289)
375 2jug_A TUBC protein; docking d 32.1 36 0.0012 21.6 2.8 39 33-71 7-49 (78)
376 3ikl_A DNA polymerase subunit 30.8 1E+02 0.0034 26.8 6.2 51 27-80 361-414 (459)
377 1s2d_A Purine trans deoxyribos 30.5 84 0.0029 23.1 5.0 68 30-98 22-109 (167)
378 1nj1_A PROR, proline-tRNA synt 29.9 41 0.0014 29.6 3.7 58 15-76 313-376 (501)
379 3hjn_A DTMP kinase, thymidylat 29.3 65 0.0022 24.1 4.3 49 20-69 2-52 (197)
380 1ati_A Glycyl-tRNA synthetase; 29.1 67 0.0023 28.2 5.0 58 15-76 397-458 (505)
381 2zt5_A Glycyl-tRNA synthetase; 28.8 1.4E+02 0.0049 27.3 7.2 59 15-76 558-618 (693)
382 2a5l_A Trp repressor binding p 28.7 1.1E+02 0.0036 22.4 5.5 65 30-97 20-96 (200)
383 1sc3_B Interleukin-1 beta conv 28.3 18 0.00062 23.7 0.9 26 20-45 21-46 (88)
384 2wem_A Glutaredoxin-related pr 27.8 57 0.0019 22.4 3.5 31 57-89 7-37 (118)
385 2j3l_A Prolyl-tRNA synthetase; 26.9 1E+02 0.0035 27.3 5.8 59 15-76 469-530 (572)
386 1t6n_A Probable ATP-dependent 26.8 64 0.0022 24.0 4.0 17 201-217 54-70 (220)
387 1kjw_A Postsynaptic density pr 26.5 31 0.0011 28.0 2.2 23 198-223 105-127 (295)
388 1qf6_A THRRS, threonyl-tRNA sy 26.3 1E+02 0.0035 27.9 5.8 60 15-79 538-598 (642)
389 1qde_A EIF4A, translation init 25.9 69 0.0023 23.9 4.0 15 201-215 54-68 (224)
390 2fwr_A DNA repair protein RAD2 25.8 70 0.0024 27.1 4.4 37 180-221 95-131 (472)
391 3czp_A Putative polyphosphate 25.4 51 0.0017 29.0 3.5 100 16-116 41-160 (500)
392 1nyr_A Threonyl-tRNA synthetas 25.4 1.1E+02 0.0036 27.7 5.7 59 15-76 544-603 (645)
393 2gxq_A Heat resistant RNA depe 25.2 37 0.0013 25.0 2.3 16 201-216 41-56 (207)
394 1hc7_A Prolyl-tRNA synthetase; 25.1 1.5E+02 0.0051 25.7 6.4 60 15-76 286-350 (477)
395 4a8j_B Elongator complex prote 25.0 1.7E+02 0.0057 23.5 6.0 65 43-111 67-137 (270)
396 4h3d_A 3-dehydroquinate dehydr 24.4 1.2E+02 0.0043 23.9 5.3 70 36-106 104-173 (258)
397 2ql9_B Caspase-7; cysteine pro 24.3 18 0.00063 24.1 0.3 31 14-44 8-47 (97)
398 1lkx_A Myosin IE heavy chain; 24.3 57 0.002 30.0 3.7 23 199-221 95-117 (697)
399 1qtn_B Caspase-8; apoptosis, d 24.1 16 0.00056 24.3 0.0 31 13-43 9-48 (95)
400 3fni_A Putative diflavin flavo 23.9 2E+02 0.0068 20.4 6.2 52 30-84 19-70 (159)
401 1hv8_A Putative ATP-dependent 23.8 64 0.0022 25.9 3.6 18 200-217 46-63 (367)
402 2q62_A ARSH; alpha/beta, flavo 23.8 2.5E+02 0.0086 21.8 7.0 65 31-98 52-124 (247)
403 3l4e_A Uncharacterized peptida 23.2 2.4E+02 0.0083 21.2 7.0 54 16-72 28-82 (206)
404 3rc3_A ATP-dependent RNA helic 23.1 47 0.0016 30.4 2.9 20 197-216 154-173 (677)
405 1rif_A DAR protein, DNA helica 22.9 44 0.0015 26.3 2.4 35 181-220 116-150 (282)
406 1w9i_A Myosin II heavy chain; 22.5 64 0.0022 30.1 3.7 23 199-221 173-195 (770)
407 1g5h_A Mitochondrial DNA polym 22.1 1.4E+02 0.0048 25.8 5.6 61 14-76 336-401 (454)
408 2wul_A Glutaredoxin related pr 22.1 75 0.0026 22.0 3.2 29 59-89 9-37 (118)
409 1nbw_B Glycerol dehydratase re 22.0 2E+02 0.0069 19.9 5.7 64 15-79 4-69 (117)
410 3kb6_A D-lactate dehydrogenase 21.7 36 0.0012 28.2 1.7 19 198-216 141-159 (334)
411 2fna_A Conserved hypothetical 21.6 41 0.0014 27.0 2.0 20 173-193 11-30 (357)
412 2dko_B Caspase-3; low barrier 21.4 23 0.00078 24.0 0.3 32 13-44 13-53 (103)
413 1pyo_B Caspase-2; apoptosis, c 21.2 23 0.00079 24.0 0.3 30 15-44 13-51 (105)
414 2d00_A V-type ATP synthase sub 20.9 1.6E+02 0.0053 19.9 4.6 44 37-83 15-58 (109)
415 2z0m_A 337AA long hypothetical 20.9 1.2E+02 0.004 23.9 4.7 17 201-217 34-50 (337)
416 2v26_A Myosin VI; calmodulin-b 20.7 83 0.0028 29.4 4.0 23 199-221 141-163 (784)
417 3bor_A Human initiation factor 20.7 75 0.0026 24.1 3.3 16 201-216 70-85 (237)
418 4db1_A Myosin-7; S1DC, cardiac 20.2 76 0.0026 29.6 3.7 24 198-221 171-194 (783)
419 2oca_A DAR protein, ATP-depend 20.2 1E+02 0.0035 26.4 4.4 36 180-220 115-150 (510)
420 4anj_A Unconventional myosin-V 20.1 83 0.0028 30.5 4.0 23 199-221 145-167 (1052)
421 1dxy_A D-2-hydroxyisocaproate 20.0 46 0.0016 27.4 2.0 18 199-216 146-163 (333)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=2.9e-44 Score=283.17 Aligned_cols=158 Identities=42% Similarity=0.756 Sum_probs=138.9
Q ss_pred CCCCCCCCCCCCcccEEEccccccCCccHHHHHHHHHhhCCCeeEEeC-CCCCCCcchHHHHHHHHhcccEEEEeecCcc
Q 045657 4 SSSSSLSPRNINKYDVFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDD-QLNRGDEISQSLVYAIENSAISLIIFSEGYA 82 (227)
Q Consensus 4 ~~~~~~s~~~~~~~dvFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~ 82 (227)
++++|+++.+.++|||||||+++|+++.|+.+|+++|+++||++|+|+ ++++|+.|.++|.++|++|+++|+|||++|+
T Consensus 23 ~s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa 102 (204)
T 3ozi_A 23 DSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYA 102 (204)
T ss_dssp -----------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGG
T ss_pred cCCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccc
Confidence 445777788899999999999999998999999999999999999998 9999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhhh-ccceeeeEEeecCCCccccccCCccCchhhHHHHhhhhHHHHHHHHHHHHHHhhhcCCccc
Q 045657 83 SSRWCLDELVKILQCKRE-YAQIVIPVFYRVDPSDVRNQTGPFGDSFSKLEERFKENSEKLKSWRNALKEAASFSGFDSQ 161 (227)
Q Consensus 83 ~S~wc~~El~~~~~~~~~-~~~~iipif~~v~~~~vr~~~~~~~~~f~~~~~~~~~~~e~i~~w~~aL~~i~~~~g~~~~ 161 (227)
.|+||++||.+++++.+. .++.|+||||+++|++||++.|.|+++|.++..++. .+++++|+.||.+++++.|+++.
T Consensus 103 ~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~ 180 (204)
T 3ozi_A 103 DSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIG 180 (204)
T ss_dssp GCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEEC
T ss_pred cCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecC
Confidence 999999999999999865 578999999999999999999999999999887764 46799999999999999998886
Q ss_pred cc
Q 045657 162 NF 163 (227)
Q Consensus 162 ~~ 163 (227)
..
T Consensus 181 ~~ 182 (204)
T 3ozi_A 181 KN 182 (204)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=9.1e-44 Score=275.93 Aligned_cols=151 Identities=47% Similarity=0.777 Sum_probs=124.9
Q ss_pred CCCCCCCcccEEEccccccCCccHHHHHHHHHhhCCCeeEEeC-CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhh
Q 045657 9 LSPRNINKYDVFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDD-QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWC 87 (227)
Q Consensus 9 ~s~~~~~~~dvFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc 87 (227)
||++..++|||||||+|+|++..|+++|+++|+++||++|+|+ ++++|+.|.++|.++|++|+++|+|||+||++|+||
T Consensus 1 msss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WC 80 (176)
T 3jrn_A 1 MSSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWC 80 (176)
T ss_dssp ------CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHH
T ss_pred CCCCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhH
Confidence 4567789999999999999988899999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccceeeeEEeecCCCccccccCCccCchhhHHHHhhhhHHHHHHHHHHHHHHhhhcCCccc
Q 045657 88 LDELVKILQCKREYAQIVIPVFYRVDPSDVRNQTGPFGDSFSKLEERFKENSEKLKSWRNALKEAASFSGFDSQ 161 (227)
Q Consensus 88 ~~El~~~~~~~~~~~~~iipif~~v~~~~vr~~~~~~~~~f~~~~~~~~~~~e~i~~w~~aL~~i~~~~g~~~~ 161 (227)
++||.+++++.+..+..|+||||+++|++||++.|.|+++|.++..+ ...+++++|+.||.+++++.|+.+.
T Consensus 81 l~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 81 LDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp HHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred HHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence 99999999999888899999999999999999999999999998877 4467899999999999999998774
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.97 E-value=2e-32 Score=209.92 Aligned_cols=121 Identities=20% Similarity=0.367 Sum_probs=110.9
Q ss_pred CCCCCcccEEEccccccCCccHHHHHHHHHhhCCCeeEEeC-CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHH
Q 045657 11 PRNINKYDVFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDD-QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLD 89 (227)
Q Consensus 11 ~~~~~~~dvFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~ 89 (227)
..+.++|||||||+++| +..|+.+|+.+|+++|+++|+|+ ++.+|+.+.++|.++|++|+++|+|+|++|+.|.||+.
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 35679999999999999 44699999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccceeeeEEeecCCCccccccCCccCchhhHH
Q 045657 90 ELVKILQCKREYAQIVIPVFYRVDPSDVRNQTGPFGDSFSKLE 132 (227)
Q Consensus 90 El~~~~~~~~~~~~~iipif~~v~~~~vr~~~~~~~~~f~~~~ 132 (227)
|+..++.+....+.+|+||||+++|++++.+.+.|++.|....
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~ 136 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNT 136 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEET
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhc
Confidence 9999998776677899999999999999999999999887643
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.94 E-value=1.3e-28 Score=186.58 Aligned_cols=140 Identities=19% Similarity=0.261 Sum_probs=94.8
Q ss_pred CCCCCCCCcccEEEccccccCCccHHHHHHHHHhh--CCCeeEEeC-CCCCCCcchHHHHHHHHhcccEEEEeecCcccc
Q 045657 8 SLSPRNINKYDVFLSFRGEDTRDNFTSHLYSALSL--KSIQTFIDD-QLNRGDEISQSLVYAIENSAISLIIFSEGYASS 84 (227)
Q Consensus 8 ~~s~~~~~~~dvFISy~~~D~~~~~~~~L~~~L~~--~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S 84 (227)
|.|....+.|||||||+++|.+ ||.+|.++|+. .|+++|+++ |+.+|+.+.++|.++|++|+++|+|+|++|+.|
T Consensus 2 ~~~~r~~k~YDvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S 79 (146)
T 3ub2_A 2 PGSSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQD 79 (146)
T ss_dssp --CCTTSSSEEEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHC
T ss_pred CCCCCCCCcceEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccC
Confidence 3446778999999999999965 79999999998 599999999 999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhccceeeeEEeecCCCccccccCCc-cCchhhHHHHhhhhHHHHHHHHHHH
Q 045657 85 RWCLDELVKILQCKREYAQIVIPVFYRVDPSDVRNQTGPF-GDSFSKLEERFKENSEKLKSWRNAL 149 (227)
Q Consensus 85 ~wc~~El~~~~~~~~~~~~~iipif~~v~~~~vr~~~~~~-~~~f~~~~~~~~~~~e~i~~w~~aL 149 (227)
+||..|+..++.+......++||||+++++..+......+ .--+......+....+.+.+|+++|
T Consensus 80 ~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 80 PWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence 9999999999987733344788999888755543222111 1112234455555556677776653
No 5
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.90 E-value=1.8e-24 Score=166.38 Aligned_cols=101 Identities=17% Similarity=0.261 Sum_probs=90.7
Q ss_pred CCCCCcccEEEccccccCCccHHHHHHHHHhhC--CCeeEEeC-CCCCCCcchHHHHHHHH-hcccEEEEeecCcccchh
Q 045657 11 PRNINKYDVFLSFRGEDTRDNFTSHLYSALSLK--SIQTFIDD-QLNRGDEISQSLVYAIE-NSAISLIIFSEGYASSRW 86 (227)
Q Consensus 11 ~~~~~~~dvFISy~~~D~~~~~~~~L~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~-~s~~~i~v~S~~~~~S~w 86 (227)
.+..+.|||||||+++| ..||.+|.++|++. |+++|+|+ |+.+|+.+.++|.++|+ +|+++|+|+|++|+.|.|
T Consensus 11 ~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 34478999999999999 45999999999984 69999999 99999999999999999 799999999999999999
Q ss_pred hHHHHHHHHHHh-hhccceeeeEEeecC
Q 045657 87 CLDELVKILQCK-REYAQIVIPVFYRVD 113 (227)
Q Consensus 87 c~~El~~~~~~~-~~~~~~iipif~~v~ 113 (227)
|..|+..++.+. .+.+.+||||+|+.-
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~ 116 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAM 116 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEccc
Confidence 999999999876 445578999999854
No 6
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.89 E-value=1.5e-24 Score=169.40 Aligned_cols=101 Identities=21% Similarity=0.374 Sum_probs=86.7
Q ss_pred CCCCCCcccEEEccccccCCccHHHH-HHHHHhh--CCCeeEEeC-CCCCCCcchHHHHHHHHhcccEEEEeecCcccch
Q 045657 10 SPRNINKYDVFLSFRGEDTRDNFTSH-LYSALSL--KSIQTFIDD-QLNRGDEISQSLVYAIENSAISLIIFSEGYASSR 85 (227)
Q Consensus 10 s~~~~~~~dvFISy~~~D~~~~~~~~-L~~~L~~--~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~ 85 (227)
..+.++.|||||||+++|. .||.+ |.+.|++ .|+++|+|+ |+.+|+.+.++|.++|++|+++|+|+|++|+.|+
T Consensus 29 ~~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~ 106 (178)
T 2j67_A 29 QLKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNE 106 (178)
T ss_dssp -CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHT
T ss_pred ccCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccc
Confidence 3567889999999999995 59976 9999998 899999999 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHh-hhccceeeeEEeec
Q 045657 86 WCLDELVKILQCK-REYAQIVIPVFYRV 112 (227)
Q Consensus 86 wc~~El~~~~~~~-~~~~~~iipif~~v 112 (227)
||..|+..++.+. ++.+.+|||||++.
T Consensus 107 wc~~El~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 107 WCHYEFYFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp GGGTHHHHTTCC-------CEEEEESSC
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 9999999998654 45567899999873
No 7
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.89 E-value=6.6e-25 Score=166.97 Aligned_cols=97 Identities=20% Similarity=0.305 Sum_probs=88.4
Q ss_pred CCCcccEEEccccccCCccHHHH-HHHHHhhC--CCeeEEeC-CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhH
Q 045657 13 NINKYDVFLSFRGEDTRDNFTSH-LYSALSLK--SIQTFIDD-QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCL 88 (227)
Q Consensus 13 ~~~~~dvFISy~~~D~~~~~~~~-L~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~ 88 (227)
.++.|||||||+++|. .||.+ |.+.|++. |+++|+|+ |+.+|+.+.++|.++|++|+++|+|+|++|+.|.||.
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4678999999999995 59997 99999986 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-hhccceeeeEEee
Q 045657 89 DELVKILQCK-REYAQIVIPVFYR 111 (227)
Q Consensus 89 ~El~~~~~~~-~~~~~~iipif~~ 111 (227)
.|+..++... ++.+.+||||+++
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~ 103 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLE 103 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEEEec
Confidence 9999988544 5566789999987
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.89 E-value=1.1e-23 Score=161.74 Aligned_cols=99 Identities=20% Similarity=0.296 Sum_probs=87.0
Q ss_pred CcccEEEccccccCC---------ccHHHHHHH-HHh-hCCCeeEEeC-CCCCCCcchHHHHHHHHhcccEEEEeecCcc
Q 045657 15 NKYDVFLSFRGEDTR---------DNFTSHLYS-ALS-LKSIQTFIDD-QLNRGDEISQSLVYAIENSAISLIIFSEGYA 82 (227)
Q Consensus 15 ~~~dvFISy~~~D~~---------~~~~~~L~~-~L~-~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~ 82 (227)
+.|||||||+++|.. ..||.+|.. .|+ ..|+++|+|+ |+.+|+.+.++|.++|++|+.+|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 479999999999963 457777665 699 7999999999 9999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHHh-hhccceeeeEEeecC
Q 045657 83 -SSRWCLDELVKILQCK-REYAQIVIPVFYRVD 113 (227)
Q Consensus 83 -~S~wc~~El~~~~~~~-~~~~~~iipif~~v~ 113 (227)
.|.||..|+..++.+. .+.+.+||||++.-.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~ 113 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSEL 113 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccc
Confidence 9999999999999887 666789999987643
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.71 E-value=4.9e-18 Score=160.97 Aligned_cols=102 Identities=19% Similarity=0.314 Sum_probs=91.0
Q ss_pred CCCCCcccEEEccccccCCccHH-HHHHHHHhh-----CCCeeEEeC-CCCCCCcchHHHHHHHHhcccEEEEeecCccc
Q 045657 11 PRNINKYDVFLSFRGEDTRDNFT-SHLYSALSL-----KSIQTFIDD-QLNRGDEISQSLVYAIENSAISLIIFSEGYAS 83 (227)
Q Consensus 11 ~~~~~~~dvFISy~~~D~~~~~~-~~L~~~L~~-----~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~ 83 (227)
....+.|||||||+++|.. || .+|.+.||. .|+++|+++ |+.+|+.+.++|.++|++||++|+|+|++|+.
T Consensus 665 ~~~~~~yd~fisy~~~d~~--~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~ 742 (844)
T 3j0a_A 665 EPDMYKYDAYLCFSSKDFT--WVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLR 742 (844)
T ss_dssp SSSCCCCSEEEECCSTTHH--HHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHH
T ss_pred cccceeccEEEEeeCCcHH--HHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEecccccc
Confidence 3467899999999999964 66 779999985 589999999 99999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHh-hhccceeeeEEeecCC
Q 045657 84 SRWCLDELVKILQCK-REYAQIVIPVFYRVDP 114 (227)
Q Consensus 84 S~wc~~El~~~~~~~-~~~~~~iipif~~v~~ 114 (227)
|+||..|+..|..+. ++...+|||||++.-+
T Consensus 743 s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 743 DGWCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp HTSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred ChHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 999999999988776 5667899999988443
No 10
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.01 E-value=1.8e-10 Score=104.33 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=43.5
Q ss_pred cccchhHHHHHHHhhcC-CCCeEEEEEEcCCCchHHHHHHHHHH----HhhcCCC
Q 045657 178 VGVESRVKEIESLLGAE-SKYVYTLGIWGFGGIGKTTIARAIFD----KISSNFE 227 (227)
Q Consensus 178 ~g~~~~~~~~~~~l~~~-~~~~~~~~i~G~gG~GKTtla~~v~~----~~~~~f~ 227 (227)
+||+.++++|.++|... ..+.++|+|+||||+||||||+++|+ +++.+|+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~ 185 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYD 185 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBS
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCC
Confidence 59999999999999754 34689999999999999999999997 4777775
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.84 E-value=1.7e-09 Score=105.40 Aligned_cols=52 Identities=19% Similarity=0.154 Sum_probs=46.4
Q ss_pred CCCccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 170 PRNYKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 170 ~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
++..+..++||+.++++|.++|.....+.++|+|+||||+||||||+++|++
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 4455678999999999999999766677899999999999999999999987
No 12
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.82 E-value=2.5e-09 Score=97.19 Aligned_cols=50 Identities=20% Similarity=0.173 Sum_probs=44.4
Q ss_pred CccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 172 NYKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 172 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..+..++||+.++++|.++|.....+.++++|+||||+||||||.++|++
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 45678999999999999999765566899999999999999999999875
No 13
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.61 E-value=2e-08 Score=96.00 Aligned_cols=51 Identities=18% Similarity=0.072 Sum_probs=42.7
Q ss_pred cccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH--hhcCCC
Q 045657 176 QLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK--ISSNFE 227 (227)
Q Consensus 176 ~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~--~~~~f~ 227 (227)
..+||+.++++|.++|... .+.++|+|+||||+||||||+++|++ ++.+|+
T Consensus 129 ~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd 181 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHS
T ss_pred CCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCC
Confidence 3499999999999998743 34789999999999999999999975 555553
No 14
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.00 E-value=5.3e-06 Score=69.68 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=39.9
Q ss_pred CccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 172 NYKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 172 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..+..++||+.+++.|.+++..+ +++.|+|++|+|||||++++.++
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH
Confidence 34578999999999999988743 68899999999999999998875
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.98 E-value=6.4e-06 Score=70.95 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=39.3
Q ss_pred cCcccccchhHHHHHHHh-hc---C---CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 174 KNQLVGVESRVKEIESLL-GA---E---SKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l-~~---~---~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
+..++||+.+++.+..+| .. + .....+|+|+|++|+|||||++++++.+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 478999999999999888 42 2 22344455599999999999999998754
No 16
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.97 E-value=4.6e-06 Score=59.32 Aligned_cols=72 Identities=7% Similarity=-0.019 Sum_probs=54.6
Q ss_pred CcccEEEccccccCCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHH
Q 045657 15 NKYDVFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKI 94 (227)
Q Consensus 15 ~~~dvFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~ 94 (227)
.+|.+||||+..| -.+.|...|...|+... | +.|+.|.++|++.++....|+||..|+..+
T Consensus 3 ~~~~lFISh~~~d----~~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVE----DYRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSH----HHHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHh----HHHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 5799999999998 26667777765566433 2 557999999999999999999999999877
Q ss_pred HHHhhhccceeeeEE
Q 045657 95 LQCKREYAQIVIPVF 109 (227)
Q Consensus 95 ~~~~~~~~~~iipif 109 (227)
.+ .+..|+-|.
T Consensus 64 ~~----~gkpIigV~ 74 (111)
T 1eiw_A 64 RK----SSKPIITVR 74 (111)
T ss_dssp TT----TTCCEEEEC
T ss_pred HH----cCCCEEEEE
Confidence 54 333455553
No 17
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.92 E-value=8e-06 Score=69.45 Aligned_cols=51 Identities=24% Similarity=0.450 Sum_probs=42.3
Q ss_pred ccCcccccchhHHHHHHHhhcC--CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 173 YKNQLVGVESRVKEIESLLGAE--SKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~~--~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.+..++||+.+++.+.+++... ......+.|+|.+|+|||||++++++.+.
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999988642 33456788999999999999999998753
No 18
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.86 E-value=2.1e-05 Score=59.79 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=39.2
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...++|++..++.+.+.+... ....+-|+|..|+|||+||+++++.+
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999988653 23456789999999999999998875
No 19
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.84 E-value=2.7e-05 Score=61.33 Aligned_cols=49 Identities=24% Similarity=0.276 Sum_probs=40.6
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..+++|++..++.+..++..+.. ...+-|+|.+|+||||||+.+++.+.
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~-~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRI-HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCC-CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCCC-CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46799999999999998875432 24778999999999999999998754
No 20
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.78 E-value=2.4e-05 Score=66.73 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=40.8
Q ss_pred cCcccccchhHHHHHHHhhc--CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGA--ESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~--~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
+..++||+.+++.+..++.. .....+.+-|+|.+|+||||||+++++.+
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999887754 22335688999999999999999999875
No 21
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.76 E-value=4.3e-05 Score=59.47 Aligned_cols=47 Identities=21% Similarity=0.300 Sum_probs=39.2
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+++|++..++.+..++...... .+-|+|.+|+|||+||+.+++.+
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~--~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNIP--HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCC--CEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCCCC--eEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999998754322 37899999999999999999875
No 22
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.74 E-value=2.2e-05 Score=66.80 Aligned_cols=49 Identities=20% Similarity=0.422 Sum_probs=41.2
Q ss_pred cCcccccchhHHHHHHHhhcC--CCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAE--SKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~--~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
+..++||+..++.+..++... ....+.+-|+|.+|+||||||+++++.+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999988542 3345678899999999999999999875
No 23
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.72 E-value=4e-05 Score=58.14 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=38.9
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+++|++..++.+.+.+... ....+-|+|..|+|||+||+++++.+
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999888653 23455799999999999999999875
No 24
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.62 E-value=7e-05 Score=63.82 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=40.9
Q ss_pred cCcccccchhHHHHHHHhhc----CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 174 KNQLVGVESRVKEIESLLGA----ESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~----~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
+..++||+..++.+..++.. .....+.+.|+|..|+|||||++++++.+.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 47899999999999888864 222234788999999999999999998864
No 25
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.53 E-value=5.8e-05 Score=55.90 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=34.2
Q ss_pred cccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 176 QLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 176 ~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+++|+...++.+.+.+..-...-.-|-|+|..|+|||++|+++++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5789998898888877532222223568999999999999999986
No 26
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.43 E-value=0.00011 Score=60.26 Aligned_cols=52 Identities=21% Similarity=0.334 Sum_probs=40.3
Q ss_pred ccCcccccchhHHHHHHHhhcC-----------CCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 173 YKNQLVGVESRVKEIESLLGAE-----------SKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~~-----------~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
...+++|.+..+++|.+.+... -...+-+-|+|.+|+|||+||+++.+.+..
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~ 77 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA 77 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3467899999999998876421 123456789999999999999999987543
No 27
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.43 E-value=0.00021 Score=59.26 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=39.8
Q ss_pred ccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 173 YKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+++|++..++.+..++..+.... +-++|.+|+||||+|+.+++.+
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGNMPH--MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCCCCC--EEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHCCHHHHHHHHHHHHcCCCCe--EEEECcCCCCHHHHHHHHHHHh
Confidence 34678999999999999987543222 7899999999999999998875
No 28
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.38 E-value=0.00011 Score=61.67 Aligned_cols=53 Identities=28% Similarity=0.370 Sum_probs=41.4
Q ss_pred ccCcccccchhHHHHHHHhhcC---CCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 173 YKNQLVGVESRVKEIESLLGAE---SKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~~---~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
...+++|++..++.+..++... ......+-|+|..|+|||+||+++.+.....
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN 82 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 4567999999999998887642 2234457899999999999999998876543
No 29
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.38 E-value=0.00025 Score=58.91 Aligned_cols=47 Identities=32% Similarity=0.361 Sum_probs=39.4
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+++|++..++.+..++..+... .+-++|..|+||||+|+++++.+
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~--~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMP--HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCC--EEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCC--eEEEECcCCCCHHHHHHHHHHHh
Confidence 467899999999999988765322 37899999999999999999875
No 30
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.29 E-value=0.00024 Score=59.05 Aligned_cols=51 Identities=24% Similarity=0.306 Sum_probs=39.4
Q ss_pred cCcccccchhHHHHHHHhhc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 174 KNQLVGVESRVKEIESLLGA-----------ESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~-----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
-.+++|.+..+++|.+++.. +-...+.+-++|..|+|||+||+++++....
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~ 75 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 75 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 35788999888888876642 1233557889999999999999999987543
No 31
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.23 E-value=0.00013 Score=60.68 Aligned_cols=52 Identities=25% Similarity=0.375 Sum_probs=40.0
Q ss_pred ccCcccccchhHHHHHHHhhc---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 173 YKNQLVGVESRVKEIESLLGA---ESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~---~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
...+++|++..++.+..++.. .......+-|+|..|+|||+||+++++....
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~ 64 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV 64 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346799999988888887752 1122346778999999999999999987643
No 32
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.22 E-value=0.00048 Score=57.88 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=39.4
Q ss_pred ccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 173 YKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+++|++..++.+..++..+.... +-++|..|+||||+|+.+.+.+
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~~~~--~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSANLPH--MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTCCC--EEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCCCCE--EEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999887553222 7899999999999999998874
No 33
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.21 E-value=0.00027 Score=58.24 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=39.3
Q ss_pred cCcccccchhHHHHHHHhhcC----------CCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 174 KNQLVGVESRVKEIESLLGAE----------SKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~----------~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
-.+++|.+..++.+.+++... ....+.+-|+|..|+||||||+++++....
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~ 80 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA 80 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 467899999999988876320 112456789999999999999999987543
No 34
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.21 E-value=0.00039 Score=58.28 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=40.2
Q ss_pred ccCcccccchhHHHHHHHhh----------cCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 173 YKNQLVGVESRVKEIESLLG----------AESKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~----------~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
.-.+++|.+..++.|.+++. ......+-+-++|..|+|||+||+++++.....
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 78 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST 78 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC
Confidence 34678999999999988772 111224567899999999999999999875443
No 35
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.15 E-value=0.00033 Score=59.73 Aligned_cols=50 Identities=22% Similarity=0.223 Sum_probs=39.0
Q ss_pred cCcccccchhHHHHHHHhhc----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 174 KNQLVGVESRVKEIESLLGA----------ESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
-.+++|.+..++.|.+++.. .....+.+-|+|..|+|||+||+++++...
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999887642 112345678999999999999999998754
No 36
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.11 E-value=0.00069 Score=57.35 Aligned_cols=49 Identities=24% Similarity=0.276 Sum_probs=39.8
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..+++|++..++.+...+..+.. ...+-|+|..|+||||+|+.+.+.+.
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~-~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRI-HHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCC-CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred hhhccCcHHHHHHHHHHHHhCCC-CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999998875432 23567999999999999999988753
No 37
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.07 E-value=0.00054 Score=55.30 Aligned_cols=50 Identities=24% Similarity=0.287 Sum_probs=35.8
Q ss_pred cCcccccchhHHHHHHHhhc---C-------CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 174 KNQLVGVESRVKEIESLLGA---E-------SKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~---~-------~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
-.+++|.+..++++.+++.. . ....+-+.|+|..|+||||||+++.+...
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 36788988877777665431 1 01123477999999999999999998754
No 38
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.05 E-value=0.00037 Score=56.52 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=37.6
Q ss_pred cCcccccchhHHHHHHHhhc----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 174 KNQLVGVESRVKEIESLLGA----------ESKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
-.+++|.+..++.+.+++.. +....+-+-++|..|+|||+||+++++.....
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 36789998888888776541 11112236689999999999999999886443
No 39
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.04 E-value=0.00073 Score=55.79 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=38.7
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+++|++..++.+..++..+.... +-++|..|+|||++|+.+.+.+
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNIPH--LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCCCC--EEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCe--EEEECcCCcCHHHHHHHHHHHh
Confidence 4678999999999998887543222 7789999999999999998875
No 40
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.04 E-value=0.00068 Score=57.43 Aligned_cols=50 Identities=20% Similarity=0.198 Sum_probs=38.1
Q ss_pred cCcccccchhHHHH---HHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 174 KNQLVGVESRVKEI---ESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 174 ~~~~~g~~~~~~~~---~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..+++|++..++.+ ...+..+....+.+-++|..|+|||+||+++.+.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999887764 444444433345788999999999999999998865
No 41
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.03 E-value=8.2e-05 Score=54.97 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=31.8
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
-+++|....++++.+.+..-.....-|-|+|..|+|||++|+++++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 45789988888888876531112223568999999999999988754
No 42
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.00 E-value=0.00054 Score=56.60 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=35.3
Q ss_pred cccccchhHHHHHHHhhc-------------CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 176 QLVGVESRVKEIESLLGA-------------ESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 176 ~~~g~~~~~~~~~~~l~~-------------~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.++|.+..++.+.+++.. .......+-++|..|+|||+||+++.+.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 578888888887765531 02334567899999999999999988875
No 43
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.00 E-value=0.00084 Score=60.06 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=41.3
Q ss_pred CccCcccccchhHHHHHHHhhcCC---------------CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 172 NYKNQLVGVESRVKEIESLLGAES---------------KYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 172 ~~~~~~~g~~~~~~~~~~~l~~~~---------------~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
....+++|++..++++..+|.... ...+.+-|+|..|+||||||+++.+.+
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999886410 134678899999999999999999875
No 44
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.94 E-value=0.00098 Score=58.92 Aligned_cols=47 Identities=23% Similarity=0.413 Sum_probs=38.7
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...++|++..++.+...|..... . -+-++|.+|+|||+||+.++..+
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~-~-~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTK-N-NPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSS-C-EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCccCcHHHHHHHHHHHhccCC-C-CeEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999998875432 2 24589999999999999999886
No 45
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.94 E-value=0.00065 Score=57.29 Aligned_cols=50 Identities=26% Similarity=0.369 Sum_probs=36.8
Q ss_pred cCcccccchhHHHHHHHhhcC---CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 174 KNQLVGVESRVKEIESLLGAE---SKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~---~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
-..++|.+..++.+...+..+ ......+.++|..|+||||||+.+.+.+.
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 356778877777766655432 22345688999999999999999998763
No 46
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.00052 Score=57.70 Aligned_cols=48 Identities=13% Similarity=-0.018 Sum_probs=38.5
Q ss_pred cccccchhHHHHHHHhhcC--CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 176 QLVGVESRVKEIESLLGAE--SKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 176 ~~~g~~~~~~~~~~~l~~~--~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.+.||+++.+++...|... ......+-|+|.+|+|||++++.|.+.+.
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999998776531 23455677899999999999999999874
No 47
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.93 E-value=0.00078 Score=56.76 Aligned_cols=47 Identities=28% Similarity=0.286 Sum_probs=37.6
Q ss_pred cCcccccchhHHHHHHHh-hcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLL-GAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l-~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+++|.+..++.+..++ ..+.. .. +.++|..|+||||+++.+.+.+
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~~-~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRDL-PH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTCC-CC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHhhCCCC-Ce-EEEECCCCCCHHHHHHHHHHHH
Confidence 467899998888888887 54332 23 7899999999999999998863
No 48
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.92 E-value=0.0008 Score=59.20 Aligned_cols=50 Identities=26% Similarity=0.400 Sum_probs=38.8
Q ss_pred ccCcccccchhH---HHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 173 YKNQLVGVESRV---KEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 173 ~~~~~~g~~~~~---~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
...+++|.+..+ ..+...+..+. ...+-++|..|+||||||+.+++....
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 346788988777 66777776543 356889999999999999999987544
No 49
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.92 E-value=0.00074 Score=51.41 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=29.1
Q ss_pred hhHHHHHHHhhcCC-CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 182 SRVKEIESLLGAES-KYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 182 ~~~~~~~~~l~~~~-~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..++.+.+++..-. .....+.|+|..|+|||||++++++.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33444444443221 2356889999999999999999998753
No 50
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.91 E-value=0.001 Score=51.47 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..+-|+|.+|+|||+||+++++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999998754
No 51
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.91 E-value=0.00054 Score=56.41 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=37.1
Q ss_pred CcccccchhHHHHHHHhhcC------------CCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 175 NQLVGVESRVKEIESLLGAE------------SKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~------------~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
..++|.+..++.+...+... ......+-++|..|+|||+||+++.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56889998888887766430 112334668999999999999999887643
No 52
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.90 E-value=0.001 Score=55.84 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=37.7
Q ss_pred cCcccccchhHHHHHHHhhc----------CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGA----------ESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-.++.|.+..++.|.+.+.. .....+-+-++|..|+|||+||+++++..
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 36788998888888776531 11234667899999999999999999876
No 53
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.89 E-value=0.001 Score=56.66 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=38.6
Q ss_pred cCcccccchhHHHHHHHhhc----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 174 KNQLVGVESRVKEIESLLGA----------ESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
-.+++|.+..++.|...+.. .....+-+-++|..|+|||+||+++++....
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 110 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 46789999999988877631 1122345778999999999999999987644
No 54
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.84 E-value=0.001 Score=56.65 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=35.9
Q ss_pred cccccchhHHHHHHHhh-------------cCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 176 QLVGVESRVKEIESLLG-------------AESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 176 ~~~g~~~~~~~~~~~l~-------------~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
.++|.+..++.+...+. ........+-++|..|+|||++|+++++....
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~ 77 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV 77 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 46788888888777662 11113356788999999999999999987543
No 55
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.81 E-value=0.001 Score=57.17 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=39.7
Q ss_pred ccCcccccchhHHHHHHHhhc----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 173 YKNQLVGVESRVKEIESLLGA----------ESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
.-.+++|.+..++.|..++.. .....+-+-|+|..|+|||+||+++.+....
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~ 174 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA 174 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC
Confidence 346899999999999887731 0112456789999999999999999887543
No 56
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.73 E-value=0.0025 Score=50.08 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=32.5
Q ss_pred cCcccccc---hhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 174 KNQLVGVE---SRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 174 ~~~~~g~~---~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..+++|.. ..++.+..++... ..+.+-|+|..|+||||||+++++...
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 35677632 3444555554432 356778999999999999999988754
No 57
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.71 E-value=0.0022 Score=52.17 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=36.0
Q ss_pred cCcccccchhHHHHHH-------Hhhc-CCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 174 KNQLVGVESRVKEIES-------LLGA-ESKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~-------~l~~-~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
...++|....++.+.. .+.. .......+-++|..|+|||+||+++++....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~ 90 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF 90 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3467787766665554 2321 2344667889999999999999999987543
No 58
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.68 E-value=0.0012 Score=54.60 Aligned_cols=48 Identities=17% Similarity=0.407 Sum_probs=37.3
Q ss_pred CcccccchhHHHHHHHhhcC-------CCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 175 NQLVGVESRVKEIESLLGAE-------SKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~-------~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..++|.+..++.+...+... ......+.++|..|+|||++|+.+++.+
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 46788888888887766532 1224578999999999999999999875
No 59
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.63 E-value=0.0021 Score=60.08 Aligned_cols=47 Identities=23% Similarity=0.413 Sum_probs=38.9
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...++|++..++.+...|..... . -+-++|.+|+|||++|+.+.+.+
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~-~-~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTK-N-NPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSS-C-EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCCC-C-CeEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999998875432 2 25689999999999999999886
No 60
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.62 E-value=0.0013 Score=58.60 Aligned_cols=50 Identities=24% Similarity=0.390 Sum_probs=38.7
Q ss_pred CcccccchhHHHHHHHhhcC-----------CCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 175 NQLVGVESRVKEIESLLGAE-----------SKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~-----------~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
.+++|.+..+++|.+++..- ....+-+-|+|..|+|||+||+++++....
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~ 264 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC
Confidence 46889999999998877531 223445779999999999999999887543
No 61
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.61 E-value=0.0021 Score=53.58 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=40.6
Q ss_pred CccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 172 NYKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 172 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..-.+++|.+..++.+..++..+.. ..++-+.|..|+|||++|+++.+.+.
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~-~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKI-PHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCC-CSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCC-CeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999875432 34566779999999999999988753
No 62
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.60 E-value=0.003 Score=52.30 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.7
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 195 SKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 195 ~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.....+|+|.|..|.||||||+.+...+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457799999999999999999887654
No 63
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.55 E-value=0.0019 Score=56.72 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=38.8
Q ss_pred ccCcccccchhHHHHHHHhhc----------CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 173 YKNQLVGVESRVKEIESLLGA----------ESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.-.+++|.+..++.|...+.. .....+-+-++|..|+|||+||+++++..
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999988888876621 11234677899999999999999999875
No 64
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.54 E-value=0.0014 Score=61.74 Aligned_cols=49 Identities=24% Similarity=0.382 Sum_probs=39.0
Q ss_pred CcccccchhHHHHHHHhhc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 175 NQLVGVESRVKEIESLLGA-----------ESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~-----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.+++|.+..+++|.+++.. +-.....+.|+|..|+||||||+++.+.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 5789999999999887753 123345688999999999999999987643
No 65
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.52 E-value=0.0037 Score=52.58 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=37.0
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-..++|.+.-++.|...+..+.-.. +.++|..|+||||+|+.+.+.+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~--~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPH--LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCC--EEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCce--EEEECCCCCCHHHHHHHHHHHH
Confidence 4567888888888888887553222 7899999999999999998874
No 66
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.49 E-value=0.0023 Score=51.44 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=33.9
Q ss_pred cCcccccchhHHHHHHHhhc--C-------C-CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 174 KNQLVGVESRVKEIESLLGA--E-------S-KYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~--~-------~-~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
-.+++|.+..+.++..+... . + .-.+-+.|+|..|+|||||++++.+...
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 35678887776666554321 0 0 0011288999999999999999988643
No 67
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.49 E-value=0.0034 Score=50.35 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
.+.+-++|..|+|||+||+++++....
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~ 65 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQV 65 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345679999999999999999987544
No 68
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.0033 Score=54.96 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=39.9
Q ss_pred ccCcccccchhHHHHHHHhhc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 173 YKNQLVGVESRVKEIESLLGA-----------ESKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~-----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
.-.++.|.+..+++|.+.+.. +-...+-+-++|.+|+|||+||+++.+...-+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 336778899988888776531 22345567789999999999999999886543
No 69
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0038 Score=54.65 Aligned_cols=52 Identities=23% Similarity=0.373 Sum_probs=39.5
Q ss_pred cCcccccchhHHHHHHHhhc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 174 KNQLVGVESRVKEIESLLGA-----------ESKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~-----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
-.++.|.+..+++|.+.+.. +-...+=+-++|.+|+|||+||+++.+...-+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 36777899888888776531 22345667789999999999999999986543
No 70
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.40 E-value=0.004 Score=51.87 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 185 KEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+..++.........+-|+|..|+||||||+++++.+
T Consensus 24 ~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 24 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 34444444332234567899999999999999999875
No 71
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.39 E-value=0.0035 Score=55.11 Aligned_cols=50 Identities=24% Similarity=0.262 Sum_probs=37.5
Q ss_pred cCcccccchhHHHHHHHh---hcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 174 KNQLVGVESRVKEIESLL---GAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l---~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..+++|.+..++.+..++ ..+....+-+-++|.+|+|||+||+++.+.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 478999998877665543 33333334577899999999999999998865
No 72
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.38 E-value=0.0028 Score=51.72 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=35.2
Q ss_pred ccCcccccchhHHHHHHHhhc--C-------C-CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 173 YKNQLVGVESRVKEIESLLGA--E-------S-KYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~--~-------~-~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...+++|.+..+.++..+... . + .-.+-+.|+|..|+|||||++++.+...
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 346788988777777665431 0 0 0011288999999999999999987643
No 73
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.37 E-value=0.017 Score=44.14 Aligned_cols=91 Identities=16% Similarity=0.105 Sum_probs=64.8
Q ss_pred cccEEEcc--------------ccccCCccHHHHHHHHHhhCCCeeEEeC-CCC-------C-CCcchHHHHHHHHhccc
Q 045657 16 KYDVFLSF--------------RGEDTRDNFTSHLYSALSLKSIQTFIDD-QLN-------R-GDEISQSLVYAIENSAI 72 (227)
Q Consensus 16 ~~dvFISy--------------~~~D~~~~~~~~L~~~L~~~g~~~~~d~-~~~-------~-g~~~~~~i~~~i~~s~~ 72 (227)
+--+||+| ..+| ......|..--....+.-|.|. +.. . -..|...+.+.|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 34578888 3444 4456777666666566566665 442 2 34577899999999999
Q ss_pred EEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEee
Q 045657 73 SLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFYR 111 (227)
Q Consensus 73 ~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~~ 111 (227)
+|+++|++...+.|..+|+..+.. +.+..||-|..+
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~ 118 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPD 118 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETT
T ss_pred EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECC
Confidence 999999999999999999988762 234466666544
No 74
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.34 E-value=0.0039 Score=58.18 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=38.8
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...++|++..++.+...|.... ..-+-++|..|+|||+||+.+.+.+
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999887543 2335689999999999999999875
No 75
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.34 E-value=0.0032 Score=53.68 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
..+-++|..|+|||+||+++.+.+..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35678999999999999999987643
No 76
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.34 E-value=0.0037 Score=55.38 Aligned_cols=50 Identities=22% Similarity=0.363 Sum_probs=36.3
Q ss_pred CcccccchhHHHHHHHhhc--C--------CCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 175 NQLVGVESRVKEIESLLGA--E--------SKYVYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~--~--------~~~~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
.+++|.+..++++.+++.. . -.-.+-+-++|..|+|||+||+++.+....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~ 75 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV 75 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5788998888877765431 1 011233679999999999999999987543
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.33 E-value=0.0031 Score=59.85 Aligned_cols=48 Identities=21% Similarity=0.387 Sum_probs=39.3
Q ss_pred ccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 173 YKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
....++|++..++.+...|..... +-+-++|.+|+||||||+.+.+.+
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~~--~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRTK--NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSSC--CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcccCCcHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHHHH
Confidence 346789999999999998875432 235689999999999999999886
No 78
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.0035 Score=54.28 Aligned_cols=53 Identities=23% Similarity=0.323 Sum_probs=39.5
Q ss_pred ccCcccccchhHHHHHHHhhc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 173 YKNQLVGVESRVKEIESLLGA-----------ESKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~-----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
.-.++.|.+..+++|.+.+.. +-...+=+=++|.+|+|||.||+++.+...-+
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 336778899988888776531 22334556789999999999999999986544
No 79
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.32 E-value=0.0032 Score=52.64 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=36.2
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...++|++..++.+...+..+ .-+-++|..|+|||+||+++.+.+.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 356889988888887766543 2466899999999999999988754
No 80
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.0044 Score=54.25 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=39.5
Q ss_pred cCcccccchhHHHHHHHhhc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 174 KNQLVGVESRVKEIESLLGA-----------ESKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~-----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
-.++.|.+..+++|.+.+.. +-...+-+-++|.+|+|||.||+++.+...-+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 36788999999888775421 12335667789999999999999999986543
No 81
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.27 E-value=0.003 Score=52.24 Aligned_cols=29 Identities=38% Similarity=0.603 Sum_probs=24.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCC
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKISSNF 226 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~~~f 226 (227)
.+.+-++|.+|+|||+||+++++.+..+|
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~ 64 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINP 64 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 45678899999999999999999865443
No 82
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0046 Score=54.45 Aligned_cols=51 Identities=18% Similarity=0.325 Sum_probs=38.8
Q ss_pred CcccccchhHHHHHHHhhc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 175 NQLVGVESRVKEIESLLGA-----------ESKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~-----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
.++.|.+..+++|.+.+.. +-...+-|-++|.+|+|||+||+++.+...-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC
Confidence 4778899888888775431 22345667789999999999999999986544
No 83
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.20 E-value=0.0049 Score=50.49 Aligned_cols=48 Identities=21% Similarity=0.186 Sum_probs=31.4
Q ss_pred CcccccchhHHHHHHHhhc-----------C-CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 175 NQLVGVESRVKEIESLLGA-----------E-SKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~-----------~-~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.++.|.+..+++|.+.+.. + ..... +.++|..|.|||||++++.....
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcC
Confidence 4566777767666654310 0 11122 89999999999999999988643
No 84
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.98 E-value=0.0037 Score=46.40 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
....+.|+|..|.|||||++++.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998875
No 85
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.87 E-value=0.0073 Score=52.89 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...+-|+|..|+||||||+++++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999999998753
No 86
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.83 E-value=0.0065 Score=54.15 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=36.4
Q ss_pred ccCcccccchhHHHHHHHhhc---C----C---CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 173 YKNQLVGVESRVKEIESLLGA---E----S---KYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~---~----~---~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...+++|.+..+.++.+++.. . . .-.+-+.|+|..|+||||||+++.+...
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 346789998887777665431 1 0 0112388999999999999999998753
No 87
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.01 Score=51.71 Aligned_cols=52 Identities=27% Similarity=0.390 Sum_probs=39.0
Q ss_pred cCcccccchhHHHHHHHhhc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 174 KNQLVGVESRVKEIESLLGA-----------ESKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~-----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
-.++-|.+..+++|.+.+.. +-...+=|=++|.+|+|||.||+++.+...-+
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~ 243 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT 243 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC
Confidence 35777899888888775531 11334567789999999999999999886544
No 88
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.78 E-value=0.0042 Score=50.33 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=21.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..|.|.|+.|.||||+++.+.+.+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999987643
No 89
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.76 E-value=0.014 Score=49.47 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=28.3
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..++.+.+........+|+|+|.+|+|||||+..+...+
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 334444444344567899999999999999999886553
No 90
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.76 E-value=0.013 Score=43.99 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
....++++.|..|.|||||.+.+..-+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456789999999999999999987754
No 91
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.72 E-value=0.013 Score=49.40 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+++++|..|.||||+++.+...+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999887653
No 92
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.67 E-value=0.0091 Score=49.92 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
....++||.|..|.|||||++.+..-+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 346799999999999999999987754
No 93
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.59 E-value=0.013 Score=51.46 Aligned_cols=51 Identities=20% Similarity=0.280 Sum_probs=35.6
Q ss_pred CcccccchhHHHHHHHhhcC------------CCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 175 NQLVGVESRVKEIESLLGAE------------SKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~------------~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
..++|.+.-++.|...+... ....+-+-++|..|+||||+|+++...+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 46788888777776554210 1122346789999999999999998875443
No 94
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.54 E-value=0.019 Score=48.18 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+++|+|.+|.||||++..+...+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999877653
No 95
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.54 E-value=0.0078 Score=56.60 Aligned_cols=51 Identities=24% Similarity=0.360 Sum_probs=37.9
Q ss_pred CcccccchhHHHHHHHhhc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 175 NQLVGVESRVKEIESLLGA-----------ESKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~-----------~~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
.++.|.+..+++|.+++.. +-...+-|-++|.+|+|||+||+++.+....+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~ 265 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4677888888888776531 11234567789999999999999998875443
No 96
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.46 E-value=0.0096 Score=49.77 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=31.8
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.+++|.+.-++.+...+.... ..-+-++|..|+|||+||+++++.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred hhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 568898775554433322111 11277899999999999999998753
No 97
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.44 E-value=0.018 Score=47.47 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..++-|.|+.|.||||||+.+.+++
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688899999999999999998764
No 98
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.37 E-value=0.021 Score=47.54 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...++.|+|.+|.||||++..+...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 46799999999999999999887654
No 99
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.36 E-value=0.021 Score=47.94 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
....++||.|..|.|||||++.+..-+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 446799999999999999999886654
No 100
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.35 E-value=0.02 Score=44.70 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....+.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678899999999999999988765
No 101
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.33 E-value=0.014 Score=48.67 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+++|+|.+|.|||||++.+..-+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45699999999999999999987653
No 102
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.32 E-value=0.012 Score=52.50 Aligned_cols=44 Identities=18% Similarity=0.071 Sum_probs=34.6
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
+.++|.+..++.+...+..+ .-+-++|.+|+|||+||+++.+.+
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 56789988888777666533 246789999999999999998754
No 103
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.31 E-value=0.02 Score=50.82 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+++|+|.+|.|||||++.+...+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 35799999999999999999987654
No 104
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.30 E-value=0.017 Score=52.00 Aligned_cols=49 Identities=27% Similarity=0.323 Sum_probs=34.7
Q ss_pred CcccccchhHHHHHHHhhc----CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 175 NQLVGVESRVKEIESLLGA----ESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~----~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.+++|.+.-+..+...+.. .......+.++|..|+||||||+.+++.+.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4577877666666443321 112456889999999999999999988754
No 105
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.26 E-value=0.013 Score=48.70 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+++++|..|.||||+++.+...+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999987654
No 106
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.21 E-value=0.015 Score=48.24 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...++||.|..|.|||||++.+...+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467999999999999999999877543
No 107
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.21 E-value=0.015 Score=48.67 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=21.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.+.++|+|.|=||+||||.+-.+.-.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a 71 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA 71 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH
Confidence 36899999999999999998876544
No 108
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.18 E-value=0.016 Score=52.80 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=37.3
Q ss_pred CccCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 172 NYKNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 172 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.....++|.+.-++.+...+..+ ..+.|+|..|+||||||+.+++.+
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred cccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccC
Confidence 33467889888787777766644 378999999999999999998754
No 109
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.17 E-value=0.018 Score=49.37 Aligned_cols=29 Identities=24% Similarity=0.073 Sum_probs=24.3
Q ss_pred CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 194 ESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 194 ~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
+-...++++|+|..|.|||||++.+....
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34456789999999999999999988764
No 110
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.16 E-value=0.013 Score=48.14 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~ 219 (227)
...+|+|.|+.|.||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999876
No 111
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.15 E-value=0.013 Score=47.20 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..++.+.|+.|.||||+|+.+...+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46789999999999999999987753
No 112
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.11 E-value=0.018 Score=53.71 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=37.5
Q ss_pred CcccccchhHHHHHHHhhcCC-------CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 175 NQLVGVESRVKEIESLLGAES-------KYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~-------~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..++|.+..++.+...+.... .....+-++|..|+|||+||+++++.+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 568899988888877665321 223468899999999999999999875
No 113
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.07 E-value=0.023 Score=47.21 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=27.8
Q ss_pred HHHHHHHhhcCCC-CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 184 VKEIESLLGAESK-YVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 184 ~~~~~~~l~~~~~-~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
+..+.+++..-.. ....+-++|..|+|||+||+++++.+.
T Consensus 137 ~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 137 FSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344455543221 245677999999999999999998754
No 114
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.06 E-value=0.014 Score=48.43 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+++++|.+|+||||++..+...+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999887654
No 115
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.06 E-value=0.029 Score=49.08 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..++|.++|.+|+||||++..+...+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999887654
No 116
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.99 E-value=0.015 Score=54.33 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=37.0
Q ss_pred CcccccchhHHHHHHHhhcC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 175 NQLVGVESRVKEIESLLGAE-------SKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~-------~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..++|.+..++.+...+... ......+-++|..|+|||+||+++.+.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 56889888888777665421 12344688999999999999999988754
No 117
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.95 E-value=0.026 Score=44.38 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=28.4
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
+..+..++.. -...+.+-++|.+|+||||+|.++.+.+.
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4455555543 22345688999999999999999988764
No 118
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.91 E-value=0.019 Score=49.01 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+++|+|..|.|||||++.+...+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35799999999999999999987764
No 119
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.91 E-value=0.027 Score=46.66 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+++++|.+|+||||++..+...+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999877653
No 120
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.90 E-value=0.015 Score=46.46 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=20.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 345899999999999999998754
No 121
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.77 E-value=0.031 Score=48.87 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+++.++|.+|+||||++..+...+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999887654
No 122
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.71 E-value=0.018 Score=46.07 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
..+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999998764
No 123
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.69 E-value=0.018 Score=46.84 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999998754
No 124
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.64 E-value=0.019 Score=46.50 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
..+++|+|..|.|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999998764
No 125
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.61 E-value=0.43 Score=38.99 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...++++|.+|+|||||.+.+.+.
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~ 143 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKK 143 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CceEEEEecCCCchHHHHHHHhcC
Confidence 446889999999999999987653
No 126
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.61 E-value=0.019 Score=47.09 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
..+++|+|..|.|||||.+.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 45899999999999999998754
No 127
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.61 E-value=0.02 Score=46.62 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999998875
No 128
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.61 E-value=0.019 Score=46.80 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 345899999999999999998754
No 129
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.59 E-value=0.02 Score=45.87 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
..+++|+|..|.|||||.+.+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999998764
No 130
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.59 E-value=0.051 Score=47.57 Aligned_cols=27 Identities=26% Similarity=0.213 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...+|.++|.+|+||||++..+...+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 368999999999999999998876543
No 131
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.57 E-value=0.033 Score=46.42 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=23.7
Q ss_pred CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 194 ESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 194 ~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.-....+++|+|..|.|||||++.+..-+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 33456789999999999999999987643
No 132
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.54 E-value=0.02 Score=46.57 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 346899999999999999998764
No 133
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.49 E-value=0.022 Score=45.31 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..+++|+|..|.|||||.+.+..-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999987653
No 134
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.48 E-value=0.046 Score=48.72 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..++|.|+|.+|+||||++..+...+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999887553
No 135
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.45 E-value=0.03 Score=46.30 Aligned_cols=26 Identities=27% Similarity=0.111 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+++++|.+|.||||++..+...+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999887653
No 136
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.44 E-value=0.046 Score=46.04 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=26.5
Q ss_pred HHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 187 IESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 187 ~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+.+-+...-....+++|+|..|.|||||.+.+...
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 33334434456789999999999999999998754
No 137
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.44 E-value=0.12 Score=43.98 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=30.3
Q ss_pred hhHHHHHHHhh-cCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 182 SRVKEIESLLG-AESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 182 ~~~~~~~~~l~-~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.....|..+|. .+=....++.|.|.+|+||||||..+....
T Consensus 44 TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 44 TGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp CSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 33455666665 333446799999999999999999987653
No 138
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.43 E-value=0.023 Score=45.78 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
..+++|+|..|.|||||.+.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999998754
No 139
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.40 E-value=0.036 Score=45.43 Aligned_cols=26 Identities=19% Similarity=0.060 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+++|.|.+|.|||||++.+...+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999887663
No 140
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.40 E-value=0.051 Score=45.75 Aligned_cols=31 Identities=26% Similarity=0.219 Sum_probs=24.6
Q ss_pred hhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 191 LGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 191 l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+........+++|.|.+|.|||||++.+...
T Consensus 49 l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 49 IMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3333456789999999999999999988654
No 141
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.39 E-value=0.023 Score=46.03 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999998764
No 142
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.39 E-value=0.03 Score=53.08 Aligned_cols=47 Identities=17% Similarity=0.410 Sum_probs=36.5
Q ss_pred cccccchhHHHHHHHhhcC-------CCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 176 QLVGVESRVKEIESLLGAE-------SKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 176 ~~~g~~~~~~~~~~~l~~~-------~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.++|.+..++.+...+... ......+-++|..|+|||+||+++++.+
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689888888887766431 1224578899999999999999999875
No 143
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.39 E-value=0.029 Score=49.00 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.++|.++|.+|+||||++..+...+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999877653
No 144
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.37 E-value=0.032 Score=47.23 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=27.9
Q ss_pred HHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 186 EIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 186 ~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.|..+|..+=....++.|+|..|.|||||+..+....
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444554333457899999999999999999987654
No 145
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.34 E-value=0.024 Score=45.98 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999998754
No 146
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.32 E-value=0.024 Score=46.09 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 345899999999999999998764
No 147
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.32 E-value=0.034 Score=45.82 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..++|+|+|-||+||||+|-.+...+
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~L 65 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAF 65 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHHHH
Confidence 47889999999999999999876654
No 148
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.31 E-value=0.02 Score=45.11 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
..+++|+|..|.|||||.+.+..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 44799999999999999998764
No 149
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.30 E-value=0.076 Score=44.95 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=28.9
Q ss_pred hhHHHHHHHhh-cCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 182 SRVKEIESLLG-AESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 182 ~~~~~~~~~l~-~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.....|..+|. .+=...+++.|.|.+|+||||||..+...
T Consensus 44 TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 44 TGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455556665 33334568999999999999999987655
No 150
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.29 E-value=0.025 Score=46.19 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999998764
No 151
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.26 E-value=0.025 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
..+++|+|..|.|||||.+.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999998764
No 152
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.22 E-value=0.046 Score=49.27 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...++.|+|+.|.|||||++.+...+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 356899999999999999999988754
No 153
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.16 E-value=0.028 Score=45.45 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
..+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34799999999999999998764
No 154
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.12 E-value=0.029 Score=52.87 Aligned_cols=52 Identities=25% Similarity=0.327 Sum_probs=38.2
Q ss_pred cCcccccchhHHHHHHHhhcC-----------CCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 174 KNQLVGVESRVKEIESLLGAE-----------SKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~-----------~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
-.++.|.+.-++.+.+.+... -.....+.++|.+|+||||||+++.+.+...
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 356778888888887766421 0123457789999999999999999886544
No 155
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.07 E-value=0.062 Score=43.81 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=28.2
Q ss_pred HHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 185 KEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-+..+|.......+.+-++|.+|+|||.+|.++.+.
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3355666544344567899999999999999999875
No 156
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.87 E-value=0.058 Score=48.14 Aligned_cols=27 Identities=4% Similarity=0.080 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...+|-+.|+.|.||||||+++..++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHH
Confidence 457888899999999999999999865
No 157
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.83 E-value=0.042 Score=46.65 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...++|+|..|.|||||++.+...+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999887653
No 158
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.80 E-value=0.026 Score=48.97 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+|-|+|+.|.||||+|+.+..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999998765
No 159
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.75 E-value=0.032 Score=46.43 Aligned_cols=24 Identities=42% Similarity=0.524 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 456899999999999999998754
No 160
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.70 E-value=0.042 Score=41.51 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...|.|+|..|+|||||...+.+.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999987654
No 161
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.64 E-value=0.025 Score=47.80 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..+|.|+|+.|+||||||..+..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 35889999999999999999987643
No 162
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.59 E-value=0.055 Score=45.47 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.+++-|+|++|+|||+||.++...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 356679999999999999998664
No 163
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.50 E-value=0.072 Score=44.08 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=24.9
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHH
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~ 219 (227)
+++|...+. -.++++.|..|+|||||.+.+.
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH
Confidence 556666554 2478999999999999999987
No 164
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.50 E-value=0.073 Score=48.17 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...+|.|.|+.|.||||+|+++.+.+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 356899999999999999999988754
No 165
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.48 E-value=0.042 Score=45.38 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 345899999999999999998764
No 166
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.45 E-value=0.056 Score=48.32 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+|-++|+.|.||||+|+.+.+.+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34678899999999999999987664
No 167
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.45 E-value=0.046 Score=46.71 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 356899999999999999998764
No 168
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.38 E-value=0.1 Score=42.04 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.....|+++|..|+|||||...+...
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34556889999999999999988653
No 169
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.33 E-value=0.067 Score=46.60 Aligned_cols=27 Identities=26% Similarity=0.108 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...++.++|.+|.||||++..+...+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999998876643
No 170
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.28 E-value=0.051 Score=46.23 Aligned_cols=23 Identities=43% Similarity=0.505 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
-.+++|.|..|.|||||.+.+..
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999998864
No 171
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.25 E-value=0.064 Score=47.17 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+|-++|+.|.||||+++.+.+.+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999987764
No 172
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.11 E-value=0.1 Score=42.14 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....|.++|..|+|||||...+.+.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3556789999999999999988754
No 173
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.07 E-value=0.045 Score=47.50 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 455899999999999999999876
No 174
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.93 E-value=0.17 Score=42.91 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=29.6
Q ss_pred ccchhHHHHHHHhh-cCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 179 GVESRVKEIESLLG-AESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 179 g~~~~~~~~~~~l~-~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+.......|..+|. .+=...+++-|.|.+|+||||||..+...
T Consensus 43 ~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 43 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33344555566664 23234568889999999999999987655
No 175
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.92 E-value=0.061 Score=46.04 Aligned_cols=24 Identities=38% Similarity=0.270 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|.|..|.|||||.+.+..
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 356899999999999999998864
No 176
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.91 E-value=0.079 Score=44.79 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.+..+++|+|.+|.|||||.+.+...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34789999999999999999998764
No 177
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.91 E-value=0.045 Score=46.47 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
..+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45799999999999999998865
No 178
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.90 E-value=0.061 Score=46.47 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=26.9
Q ss_pred hHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHH
Q 045657 183 RVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~ 219 (227)
....|..+|..+=....++.|+|..|+|||||+..+.
T Consensus 163 G~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 163 GSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 3455556664333345689999999999999999764
No 179
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.56 E-value=0.075 Score=44.98 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
....++|.|..|.|||||.+.+.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999988763
No 180
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.51 E-value=0.16 Score=42.17 Aligned_cols=37 Identities=19% Similarity=0.081 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...|.+++ .+=....++-|.|.+|+||||||..+...
T Consensus 55 ~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 55 FTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp CHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34444545 33234567888899999999999987655
No 181
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.40 E-value=0.16 Score=45.61 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
...+|.+.|+.|.||||+|+.+...+.
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 357899999999999999999887643
No 182
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.40 E-value=0.076 Score=45.73 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 456899999999999999998764
No 183
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.39 E-value=0.1 Score=44.48 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+++|+|..|.|||||.+.+...+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45689999999999999999987653
No 184
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.38 E-value=0.075 Score=47.70 Aligned_cols=75 Identities=9% Similarity=0.013 Sum_probs=42.7
Q ss_pred HHHHhhCCCeeEEeC---CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEee
Q 045657 37 YSALSLKSIQTFIDD---QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFYR 111 (227)
Q Consensus 37 ~~~L~~~g~~~~~d~---~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~~ 111 (227)
.+.|+.-|+....+. ++..|+.-.-.|..++-.--..+++==|...-.+--..++...+......+..|+-|-++
T Consensus 140 ~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd 217 (538)
T 1yqt_A 140 EEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217 (538)
T ss_dssp HHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 345555666543333 456666666677777766555555555665555555556666555543334456555544
No 185
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.38 E-value=0.13 Score=42.40 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=24.7
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
++++...+. -.+++++|..|+|||||.+.+..
T Consensus 160 v~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 160 IEELKEYLK-----GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHST
T ss_pred HHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhcc
Confidence 555555554 23789999999999999998754
No 186
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.36 E-value=0.097 Score=47.86 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+|-+.|+.|.||||+|+.+.+.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998876
No 187
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.36 E-value=0.065 Score=47.16 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||++.+.+-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3457999999999999999998763
No 188
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.25 E-value=0.1 Score=44.38 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.+++|.|..|.|||||.+.+.+.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 489999999999999999987653
No 189
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.15 E-value=0.16 Score=42.67 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=28.3
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...|..+|..+=....++-|.|..|+||||||..+...
T Consensus 108 ~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 108 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred ChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455556434345678999999999999999987765
No 190
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.14 E-value=0.06 Score=45.74 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...++|+|..|.|||||.+.+..-
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 347899999999999999998764
No 191
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.05 E-value=0.073 Score=47.81 Aligned_cols=73 Identities=12% Similarity=-0.015 Sum_probs=40.9
Q ss_pred HHHhhCCCeeEEeC---CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEee
Q 045657 38 SALSLKSIQTFIDD---QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFYR 111 (227)
Q Consensus 38 ~~L~~~g~~~~~d~---~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~~ 111 (227)
+.|+.-|+....+. ++..|+.-.-.|..++-.--..+++==|...-.+-...++...+..... +..|+-|-++
T Consensus 121 ~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHd 196 (538)
T 3ozx_A 121 EVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHD 196 (538)
T ss_dssp HHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSC
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeC
Confidence 34455555444443 4566666656777777665555555556655555555566665554433 4455555444
No 192
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.02 E-value=0.078 Score=46.20 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 045657 201 LGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 201 ~~i~G~gG~GKTtla~~v~~ 220 (227)
++|+|..|.|||||.+.++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 99999999999999999875
No 193
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.00 E-value=0.089 Score=47.23 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999998753
No 194
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.93 E-value=0.097 Score=44.52 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~ 220 (227)
.+++|+|..|+|||||.+.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 3789999999999999998764
No 195
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.86 E-value=0.15 Score=43.28 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=21.9
Q ss_pred CCeEEEEEEc-CCCchHHHHHHHHHHHh
Q 045657 196 KYVYTLGIWG-FGGIGKTTIARAIFDKI 222 (227)
Q Consensus 196 ~~~~~~~i~G-~gG~GKTtla~~v~~~~ 222 (227)
...++|+|++ -||+||||+|-.+...+
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~L 168 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAH 168 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHH
Confidence 4578999985 89999999998876553
No 196
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.70 E-value=0.079 Score=40.98 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=19.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..-|.|+|..|+|||||.+.+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345788999999999999987643
No 197
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.67 E-value=0.1 Score=47.60 Aligned_cols=74 Identities=11% Similarity=0.046 Sum_probs=42.6
Q ss_pred HHHhhCCCeeEEeC---CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEee
Q 045657 38 SALSLKSIQTFIDD---QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFYR 111 (227)
Q Consensus 38 ~~L~~~g~~~~~d~---~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~~ 111 (227)
+.|+.-|+.-..+. ++..|+.-.-.|..++-.--..+++==|...-..--..++...+......+..|+-|-++
T Consensus 211 ~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHd 287 (607)
T 3bk7_A 211 EVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287 (607)
T ss_dssp HHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 44555566544443 456666666677777766655555555665555555566666665543334556656544
No 198
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.61 E-value=0.093 Score=40.99 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
-+.+.|.|..|+||||||.++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356789999999999999988654
No 199
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.56 E-value=0.21 Score=43.69 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 045657 200 TLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.+-|.|.+|.||||++..+...+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78889999999999999887764
No 200
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.51 E-value=0.11 Score=45.29 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.-..++|.|..|.|||||.+.+.+-.
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45679999999999999999988753
No 201
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=91.47 E-value=0.27 Score=42.05 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=22.2
Q ss_pred CCeEEEEEE-cCCCchHHHHHHHHHHHh
Q 045657 196 KYVYTLGIW-GFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 196 ~~~~~~~i~-G~gG~GKTtla~~v~~~~ 222 (227)
...++|+|+ |-||+||||+|-.+...+
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~L 133 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAM 133 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHH
Confidence 457889888 789999999999876654
No 202
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.46 E-value=0.11 Score=47.37 Aligned_cols=76 Identities=9% Similarity=-0.008 Sum_probs=44.9
Q ss_pred HHHHHhhCCCeeEEeC---CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEee
Q 045657 36 LYSALSLKSIQTFIDD---QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFYR 111 (227)
Q Consensus 36 L~~~L~~~g~~~~~d~---~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~~ 111 (227)
+.+.|+.-|+....+. ++..|+.-.-+|..++-.--..+++==|...-.+.-..++...+......+..|+-|-++
T Consensus 202 ~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 280 (608)
T 3j16_B 202 VKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280 (608)
T ss_dssp HHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSC
T ss_pred HHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4445556666555554 566676666677788766555555555665555655666666666554444456555444
No 203
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.42 E-value=0.061 Score=44.77 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~ 220 (227)
.+++|+|..|+|||||.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4889999999999999998754
No 204
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.32 E-value=0.16 Score=37.37 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=19.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.+..|+|..|.|||||..+++--
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999998654
No 205
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.25 E-value=0.23 Score=43.41 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=28.9
Q ss_pred ccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 179 GVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 179 g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
|.......|.+++ .+=....++.|.|-+|+|||||+..+...+
T Consensus 185 ~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 185 GIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3333344455544 222345688899999999999999887663
No 206
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.15 E-value=0.083 Score=44.35 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..++|+|..|.|||||.+.+..-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999987654
No 207
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.09 E-value=0.054 Score=49.22 Aligned_cols=48 Identities=15% Similarity=0.008 Sum_probs=32.4
Q ss_pred cCcccccchhHHHHHHHhhcCCCC---------eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 174 KNQLVGVESRVKEIESLLGAESKY---------VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~---------~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.+.++|.+.-++.+...|..+... -.-+-++|.+|+|||+||+++++.
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 467889887666665444433100 003668999999999999988764
No 208
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.07 E-value=0.17 Score=43.92 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...+++|.|..|.|||||.+++...+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 45689999999999999999988764
No 209
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.06 E-value=0.13 Score=46.95 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 3568999999999999999987653
No 210
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.98 E-value=0.11 Score=48.74 Aligned_cols=51 Identities=25% Similarity=0.356 Sum_probs=36.0
Q ss_pred CcccccchhHHHHHHHhhcC-----------CCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 175 NQLVGVESRVKEIESLLGAE-----------SKYVYTLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~-----------~~~~~~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
.++.|.+..+++|.+.+... ....+-+-++|.+|.|||.||+++.+....+
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc
Confidence 56667888888877655321 1223446689999999999999999875443
No 211
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.97 E-value=0.13 Score=40.15 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=18.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~ 219 (227)
..-|.|+|-+|+|||||...+.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4457899999999999998765
No 212
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.93 E-value=0.12 Score=46.99 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3468999999999999999987653
No 213
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.81 E-value=0.15 Score=42.48 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=26.5
Q ss_pred HHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 185 KEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..|..+|..+=....++-|+|.+|+||||||..+...
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 3444555432233568899999999999999988765
No 214
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.79 E-value=0.097 Score=45.48 Aligned_cols=21 Identities=33% Similarity=0.581 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 045657 201 LGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 201 ~~i~G~gG~GKTtla~~v~~~ 221 (227)
|+|+|..|+|||||.+.+...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 399999999999999988654
No 215
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.76 E-value=0.17 Score=45.14 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=26.4
Q ss_pred HHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 187 IESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 187 ~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
+..+|..+-..-.+++|.|..|.|||||++.+....
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 444444332345689999999999999999987653
No 216
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.69 E-value=0.19 Score=41.58 Aligned_cols=38 Identities=26% Similarity=0.258 Sum_probs=27.7
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...|..+|..+=....++-|.|.+|+||||||..+.-.
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44555555433234578999999999999999987654
No 217
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.18 E-value=0.15 Score=46.09 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...+++|+|..|.|||||.+.+..-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999987653
No 218
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.98 E-value=0.16 Score=45.85 Aligned_cols=24 Identities=38% Similarity=0.367 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346899999999999999998764
No 219
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.94 E-value=0.79 Score=38.94 Aligned_cols=41 Identities=27% Similarity=0.244 Sum_probs=28.1
Q ss_pred chhHHHHHHHhh-cCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 181 ESRVKEIESLLG-AESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 181 ~~~~~~~~~~l~-~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
......|..+|. .+=...+++-|.|.+|+||||||..+...
T Consensus 56 ~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 56 STGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 334555666664 22233457888999999999999987655
No 220
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.94 E-value=0.3 Score=42.52 Aligned_cols=44 Identities=25% Similarity=0.206 Sum_probs=29.5
Q ss_pred cccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 178 VGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 178 ~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.|.......|.+++ .+=....++-|.|.+|+||||||..+....
T Consensus 181 ~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 181 AGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp --CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34444455566655 333345678889999999999999877653
No 221
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=89.87 E-value=0.16 Score=41.39 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=19.2
Q ss_pred eEEEEEEc---CCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWG---FGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G---~gG~GKTtla~~v~~~~ 222 (227)
.+++.|++ -||+||||+|..+...+
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~l 61 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLT 61 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHH
Confidence 34666765 89999999999876553
No 222
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.87 E-value=0.17 Score=45.07 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=19.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAI 218 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v 218 (227)
.-.+++|+|..|.|||||++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4568999999999999999984
No 223
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.72 E-value=0.4 Score=41.63 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=32.6
Q ss_pred cCcccccchhHHHHHHHhhcC---------CCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 174 KNQLVGVESRVKEIESLLGAE---------SKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~---------~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+.+=.|.++-++.+.+.+... .....-++|+|.+|+|||||.+.+...
T Consensus 147 A~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 147 AEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp TTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred ccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 344456666666666655321 123467899999999999999988654
No 224
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.67 E-value=0.13 Score=43.59 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 045657 200 TLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~ 220 (227)
-|+|+|..|+|||||.+.++.
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHhC
Confidence 358999999999999999764
No 225
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=89.63 E-value=0.44 Score=39.19 Aligned_cols=27 Identities=26% Similarity=0.155 Sum_probs=21.8
Q ss_pred CCeEEEEEEcC-CCchHHHHHHHHHHHh
Q 045657 196 KYVYTLGIWGF-GGIGKTTIARAIFDKI 222 (227)
Q Consensus 196 ~~~~~~~i~G~-gG~GKTtla~~v~~~~ 222 (227)
...++|.|.|. ||+||||+|..+...+
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~l 129 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVI 129 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHH
Confidence 45679999986 8999999999876653
No 226
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=89.62 E-value=0.28 Score=41.97 Aligned_cols=45 Identities=27% Similarity=0.269 Sum_probs=31.9
Q ss_pred cccccchhHHHHHHHhhc-CCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 176 QLVGVESRVKEIESLLGA-ESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 176 ~~~g~~~~~~~~~~~l~~-~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.++|....++++.+.+.. ...+.. |-|.|..|+|||++|+.++..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~-vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECP-VLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSC-EEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCC-eEEecCCCcCHHHHHHHHHHh
Confidence 456666667777665543 222333 478999999999999999875
No 227
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.38 E-value=0.41 Score=43.27 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.++-|.|.+|.||||++..+...+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467789999999999999887653
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=89.27 E-value=0.35 Score=39.04 Aligned_cols=35 Identities=23% Similarity=0.132 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+++|.+.+...- ..++++|..|+|||||.+.+...
T Consensus 88 i~~L~~~l~~~~---~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 88 KVLLKKLSFDRL---ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp HHHHHHHCCCTT---CEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh---hheEEeCCCCCCHHHHHHHHhcc
Confidence 556666554211 46789999999999999987653
No 229
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.26 E-value=0.39 Score=40.46 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...|.+++. +=....++-|.|.+|+||||||..+...
T Consensus 33 ~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 33 FVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp CHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred ChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 444444443 2223457778899999999999988665
No 230
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=89.17 E-value=0.23 Score=41.94 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
....++++|..|+|||||.+.+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 466899999999999999988754
No 231
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.16 E-value=0.4 Score=41.88 Aligned_cols=44 Identities=23% Similarity=0.154 Sum_probs=29.9
Q ss_pred cccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 178 VGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 178 ~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.|.......|.+++. +=....++-|.|.+|+||||||-.+....
T Consensus 178 ~gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 178 TGVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp CSBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 344444555555552 32345578888999999999999887653
No 232
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=89.12 E-value=0.22 Score=42.36 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+..+++|+|..|+|||||.+.+.+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 4667999999999999999987643
No 233
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.74 E-value=0.17 Score=45.90 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...+++|+|..|.|||||.+.+..
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998754
No 234
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=88.51 E-value=0.27 Score=43.28 Aligned_cols=24 Identities=29% Similarity=0.742 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 045657 200 TLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.++|+|-.|+|||||++.+...+.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhh
Confidence 478999999999999998877644
No 235
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.41 E-value=0.19 Score=45.59 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
....++|+|..|.|||||.+.+..
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 456899999999999999998754
No 236
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=88.38 E-value=0.65 Score=37.60 Aligned_cols=27 Identities=30% Similarity=0.219 Sum_probs=21.6
Q ss_pred CCeEEEEEEcC-CCchHHHHHHHHHHHh
Q 045657 196 KYVYTLGIWGF-GGIGKTTIARAIFDKI 222 (227)
Q Consensus 196 ~~~~~~~i~G~-gG~GKTtla~~v~~~~ 222 (227)
...++|.|.+. ||+||||+|..+...+
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~l 107 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAY 107 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence 45688999965 8999999999876653
No 237
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.36 E-value=0.24 Score=44.18 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=19.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..++|.|..|.|||||.+++..-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999987654
No 238
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=88.26 E-value=0.5 Score=42.87 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=25.0
Q ss_pred HhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 190 LLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 190 ~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.|..-...+.+|+|+|..|+|||||.+.+.+.
T Consensus 30 ~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~ 61 (592)
T 1f5n_A 30 ILSAITQPMVVVAIVGLYRTGKSYLMNKLAGK 61 (592)
T ss_dssp HHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred HHHhccCCCcEEEEECCCCCCHHHHHHhHcCC
Confidence 34333456889999999999999999887653
No 239
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=88.15 E-value=0.14 Score=43.90 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 045657 200 TLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+++|+|..|.|||||.++++--
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 8899999999999999998643
No 240
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=88.11 E-value=0.22 Score=43.26 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...++|+|..|.|||||.+.+..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg 179 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTR 179 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHc
Confidence 45689999999999999998754
No 241
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=88.03 E-value=0.31 Score=41.41 Aligned_cols=47 Identities=30% Similarity=0.352 Sum_probs=32.1
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..++|....+.++...+..-...-..+-|.|..|.||+++|+.+++.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHh
Confidence 45678777676666655321111123558899999999999999875
No 242
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.92 E-value=0.3 Score=46.94 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
..+++|+|..|.|||||.+.+..
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999874
No 243
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=87.90 E-value=0.17 Score=45.73 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
....++|+|..|.|||||.+.+..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 346899999999999999987643
No 244
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.80 E-value=0.21 Score=45.27 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=20.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
....++|+|..|.|||||++.+..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999997643
No 245
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=87.75 E-value=0.44 Score=39.03 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=19.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.--|.++|..|+|||||...+.+.
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~ 178 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTN 178 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCChHHHHHHHHhC
Confidence 345789999999999999877653
No 246
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=87.68 E-value=0.38 Score=41.53 Aligned_cols=25 Identities=24% Similarity=0.026 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...++|+|..|.|||||++.+.+.+
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 3478999999999999999987764
No 247
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=87.61 E-value=0.3 Score=41.50 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=17.3
Q ss_pred eEEEEEEcCCCchHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAI 218 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v 218 (227)
..-|-|.|.||.||||+++.+
T Consensus 33 ~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred ccEEEEECCCCCcHHHHHHHH
Confidence 334568899999999999974
No 248
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=87.49 E-value=0.79 Score=39.70 Aligned_cols=48 Identities=13% Similarity=0.266 Sum_probs=32.5
Q ss_pred cCcccccchhHHHHHHHhhcC-----CCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 174 KNQLVGVESRVKEIESLLGAE-----SKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~-----~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+.+=.|.++-++.+.+.+... .....-|+++|.+|+|||||...+...
T Consensus 146 A~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 146 GTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp TTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCC
Confidence 344456666666666655421 124567889999999999999987643
No 249
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=86.75 E-value=0.88 Score=39.79 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=28.6
Q ss_pred HHHHHHhhc---CCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 185 KEIESLLGA---ESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 185 ~~~~~~l~~---~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+.+...|.. ....+.+|+|+|....||+||...++..
T Consensus 51 eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 51 TALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp HHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 334345543 3456999999999999999999999875
No 250
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.69 E-value=0.29 Score=47.04 Aligned_cols=74 Identities=16% Similarity=0.064 Sum_probs=41.2
Q ss_pred HHHHHHhhCCCe-eEEeC---CCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEe
Q 045657 35 HLYSALSLKSIQ-TFIDD---QLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFY 110 (227)
Q Consensus 35 ~L~~~L~~~g~~-~~~d~---~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~ 110 (227)
.+...|+.-|+. -..+. ++..|+.-.-.|..++-.-...+++==|...-......++...+.. .+..||-+-+
T Consensus 527 ~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSH 603 (986)
T 2iw3_A 527 AIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISH 603 (986)
T ss_dssp HHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECS
T ss_pred HHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEEC
Confidence 345567777873 33333 5666666666777776655555555555555555555555555543 2444555544
Q ss_pred e
Q 045657 111 R 111 (227)
Q Consensus 111 ~ 111 (227)
+
T Consensus 604 d 604 (986)
T 2iw3_A 604 D 604 (986)
T ss_dssp C
T ss_pred C
Confidence 3
No 251
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=86.62 E-value=0.62 Score=43.08 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+...|+|+|..|.|||||.+++...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456889999999999999988754
No 252
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=86.43 E-value=0.62 Score=41.11 Aligned_cols=38 Identities=11% Similarity=-0.086 Sum_probs=26.6
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
...|.+++. +=....++-|.|.+|+||||||..+....
T Consensus 229 ~~~LD~~lg-Gl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 229 CTGINDKTL-GARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CTTHHHHHC-CCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhhhhHhhc-ccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 344444442 33345678888999999999999887664
No 253
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=86.38 E-value=1.1 Score=36.49 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=21.4
Q ss_pred CCeEEEEEEc-CCCchHHHHHHHHHHHh
Q 045657 196 KYVYTLGIWG-FGGIGKTTIARAIFDKI 222 (227)
Q Consensus 196 ~~~~~~~i~G-~gG~GKTtla~~v~~~~ 222 (227)
...++|.|.+ -||+||||+|..+...+
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~l 117 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVI 117 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence 4567888886 58999999999876654
No 254
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=85.96 E-value=0.34 Score=40.44 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=17.3
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 045657 200 TLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~ 219 (227)
-|.|+|..|+|||||...+.
T Consensus 167 kI~ivG~~~vGKSsLl~~l~ 186 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLK 186 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTC
T ss_pred eEEEECCCCccHHHHHHHHh
Confidence 57899999999999988754
No 255
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=85.78 E-value=0.42 Score=43.45 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=20.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
++..++|+|..|.|||||.+.+..
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHS
T ss_pred cCCeEEEECCCCChHHHHHHHHhC
Confidence 345699999999999999998764
No 256
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=85.32 E-value=0.45 Score=40.64 Aligned_cols=27 Identities=30% Similarity=0.250 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
....|.|-|.=|+||||+++.+.+.+.
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 466889999999999999999887643
No 257
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=85.22 E-value=0.45 Score=42.39 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=19.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.--|+++|.+|+|||||.+.+.+.
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~ 64 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGE 64 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999987643
No 258
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=84.89 E-value=0.39 Score=41.13 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=14.7
Q ss_pred CCeEEEEEE-cCCCchHHHHHHHHHHHhh
Q 045657 196 KYVYTLGIW-GFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 196 ~~~~~~~i~-G~gG~GKTtla~~v~~~~~ 223 (227)
...++|+|+ |-||+||||+|-.+...+.
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA 137 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALR 137 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHH
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHH
Confidence 457888888 8899999999988766543
No 259
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=84.74 E-value=1.5 Score=38.42 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=28.7
Q ss_pred HHHHHHHhhc---CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 184 VKEIESLLGA---ESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 184 ~~~~~~~l~~---~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-+.|..+|.. ....+.||+|+|..+.|||+|...+++-+
T Consensus 50 ~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~~~ 91 (457)
T 4ido_A 50 ETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYM 91 (457)
T ss_dssp HHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHHHh
Confidence 3444444443 24569999999999999999999876543
No 260
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=84.69 E-value=0.46 Score=47.08 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
....++|+|..|.|||||++.+..
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998865
No 261
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=84.45 E-value=1.3 Score=40.25 Aligned_cols=36 Identities=22% Similarity=0.109 Sum_probs=25.4
Q ss_pred hhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 182 SRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.+...+...+. -+++-|.|.+|.||||++..+...+
T Consensus 153 ~Q~~Ai~~~l~-----~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 153 WQKVAAAVALT-----RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp HHHHHHHHHHT-----BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-----CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 34555544442 3477889999999999998876553
No 262
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=84.40 E-value=0.65 Score=38.67 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+-+.|.|..|+||||+|.+...+
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc
Confidence 56889999999999999987664
No 263
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=83.98 E-value=0.35 Score=44.44 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=35.2
Q ss_pred CCCCCCcchHHHHHHHHhccc--EEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEeec
Q 045657 52 QLNRGDEISQSLVYAIENSAI--SLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFYRV 112 (227)
Q Consensus 52 ~~~~g~~~~~~i~~~i~~s~~--~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~~v 112 (227)
++..|+.-.-.|..++-..-. .+++==|...-.+....++...+...+..+..|+-|-++.
T Consensus 202 ~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 202 TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 455566555677777765433 5555555555555556666666655544455666665553
No 264
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=83.87 E-value=3 Score=31.01 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=48.1
Q ss_pred ccHHHHHHHHHhhCCCeeEEeCC--CCCCCcchHHHHHHHHhcccEEEEeec--CcccchhhHHHHHHHHHHh
Q 045657 30 DNFTSHLYSALSLKSIQTFIDDQ--LNRGDEISQSLVYAIENSAISLIIFSE--GYASSRWCLDELVKILQCK 98 (227)
Q Consensus 30 ~~~~~~L~~~L~~~g~~~~~d~~--~~~g~~~~~~i~~~i~~s~~~i~v~S~--~~~~S~wc~~El~~~~~~~ 98 (227)
..+.+.+.+.|++.|+.++.-.+ ......+..+-.++|++|+++|++++| .-..++-+..|+-.+....
T Consensus 26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Alg 98 (161)
T 2f62_A 26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN 98 (161)
T ss_dssp HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCC
Confidence 35889999999999999887432 112233444447889999999999986 3333455677887776544
No 265
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=83.34 E-value=1.1 Score=38.10 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=29.4
Q ss_pred cCcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 174 KNQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+..-.|.+.-++.+.+++.. +.+.++|..|+|||||.+.+.+.
T Consensus 143 A~~g~gi~~L~~~I~~~~~~-----~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 143 AAKGIGMAKVMEAINRYREG-----GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTTTBTHHHHHHHHHHHHTT-----SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhhccc-----CcEEEEcCCCCchHHHHHHHHhh
Confidence 33334555555555554421 35788999999999999999876
No 266
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=83.31 E-value=0.62 Score=39.17 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
.+..|+|+|..|+|||||.+.+..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCcHHHHHHHHhC
Confidence 344899999999999999998865
No 267
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=83.30 E-value=1 Score=39.33 Aligned_cols=24 Identities=21% Similarity=0.108 Sum_probs=20.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHH
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~ 219 (227)
...++..|.|.+|.||||+.....
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~ 182 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRV 182 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHh
Confidence 457899999999999999998754
No 268
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=83.04 E-value=0.52 Score=39.65 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=18.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~ 220 (227)
.-|+++|..++|||||...+.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~ 180 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSS 180 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEE
T ss_pred CeeeeeCCCCCCHHHHHHHHHc
Confidence 3589999999999999987643
No 269
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=82.48 E-value=0.58 Score=42.93 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=16.8
Q ss_pred CeEEEEEEcCCCchHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIA 215 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla 215 (227)
.-.+++|+|..|.|||||.
T Consensus 43 ~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 43 RGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHh
Confidence 3468999999999999996
No 270
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=82.46 E-value=0.72 Score=43.13 Aligned_cols=23 Identities=26% Similarity=0.031 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
..+++|.|..|.|||||.+.+..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 46899999999999999998764
No 271
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=82.18 E-value=0.85 Score=40.01 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 045657 200 TLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~ 221 (227)
-|.|+|..|+|||||.+.+.+.
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4789999999999999998765
No 272
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=82.15 E-value=1.6 Score=39.62 Aligned_cols=36 Identities=28% Similarity=0.245 Sum_probs=24.6
Q ss_pred chhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 181 ESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+.+.+.+...+. ..+.-|+|.+|.|||+++..+...
T Consensus 183 ~~Q~~av~~~l~-----~~~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 183 HSQVYAVKTVLQ-----RPLSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp HHHHHHHHHHHT-----CSEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-----CCCeEEECCCCCCHHHHHHHHHHH
Confidence 345555555553 125668999999999988876555
No 273
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=82.09 E-value=0.21 Score=37.92 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=18.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAI 218 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v 218 (227)
...-|.|+|..|+|||||.+.+
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l 53 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRF 53 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSS
T ss_pred cceEEEEECCCCCCHHHHHHHH
Confidence 3556789999999999998764
No 274
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=81.96 E-value=1.4 Score=40.21 Aligned_cols=36 Identities=28% Similarity=0.231 Sum_probs=23.2
Q ss_pred chhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHH-HHH
Q 045657 181 ESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARA-IFD 220 (227)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~-v~~ 220 (227)
+++++.+...|... + +.-|+|++|.|||+..-+ |+.
T Consensus 192 ~~Q~~AV~~al~~~--~--~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 192 TSQKEAVLFALSQK--E--LAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp HHHHHHHHHHHHCS--S--EEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--C--ceEEECCCCCCHHHHHHHHHHH
Confidence 45666666666422 2 455889999999975544 443
No 275
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=81.89 E-value=1.3 Score=37.52 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=28.6
Q ss_pred CcccccchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 175 NQLVGVESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 175 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..-.|.+.-++.+.+++. + ..+.++|..|+|||||.+.+.+.
T Consensus 142 ~~g~gi~~L~~~l~~~~~----~-~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 142 AKGQGIAELADAIEYYRG----G-KDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTCTTHHHHHHHHHHHHT----T-SCEEEEEBTTSSHHHHHHHHHHH
T ss_pred CCCcCHHHHHhhhhhhcc----c-ceEEEecCCCCChhHHHHHHHhh
Confidence 333455554555544432 1 35788999999999999999886
No 276
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=81.71 E-value=0.8 Score=43.07 Aligned_cols=24 Identities=29% Similarity=-0.010 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
..++++|.|..|.|||||.+.+..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHH
Confidence 457899999999999999998764
No 277
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=81.11 E-value=1.1 Score=38.67 Aligned_cols=25 Identities=32% Similarity=0.175 Sum_probs=21.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.-++|.|-.|+|||+|+..+.+.+.
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHHh
Confidence 3578999999999999998888643
No 278
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=81.10 E-value=1.9 Score=37.42 Aligned_cols=43 Identities=14% Similarity=0.317 Sum_probs=28.4
Q ss_pred cccchhHHHHHHHhhcC-----CCCeEEEEEEcCCCchHHHHHHHHHH
Q 045657 178 VGVESRVKEIESLLGAE-----SKYVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 178 ~g~~~~~~~~~~~l~~~-----~~~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
.|.++-++.+.+.+... .....-++++|.+|+|||||...+..
T Consensus 170 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~ 217 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLG 217 (456)
T ss_dssp TTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHT
T ss_pred cchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhC
Confidence 45444455554444311 13456788999999999999998763
No 279
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=81.07 E-value=0.41 Score=47.56 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...++|+|..|.|||||++.+++
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 35799999999999999998765
No 280
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=80.73 E-value=0.74 Score=45.61 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
....++|+|..|.|||||++.+..
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999998754
No 281
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=79.67 E-value=0.95 Score=40.62 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
....|.|+|..|+|||||.+++...
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999988654
No 282
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=79.65 E-value=1.3 Score=37.59 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=18.3
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 045657 201 LGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 201 ~~i~G~gG~GKTtla~~v~~~ 221 (227)
+.|.|..|.||||+++.+...
T Consensus 38 ~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 38 WTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 568899999999999987765
No 283
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=79.56 E-value=0.62 Score=44.72 Aligned_cols=72 Identities=14% Similarity=0.121 Sum_probs=38.4
Q ss_pred HhhCCCee-EEeC---CCCCCCcchHHHHHHHHhc--ccEEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEee
Q 045657 40 LSLKSIQT-FIDD---QLNRGDEISQSLVYAIENS--AISLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFYR 111 (227)
Q Consensus 40 L~~~g~~~-~~d~---~~~~g~~~~~~i~~~i~~s--~~~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~~ 111 (227)
|..-|+.- .++. ++..|+.-.-+|..++... ..++++==|...-.+--.++|..++...+..+..||-|=++
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 582 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHD 582 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 44455542 2333 4555665555666666544 23444444555555555566666666555555566655444
No 284
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=79.50 E-value=0.97 Score=44.88 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
...++|+|..|.|||||++.+.+
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTT
T ss_pred CcEEEEEecCCCcHHHHHHHhcc
Confidence 45899999999999999998754
No 285
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=79.12 E-value=0.58 Score=44.23 Aligned_cols=73 Identities=11% Similarity=0.034 Sum_probs=38.8
Q ss_pred HHhhCCCe-eEEeC---CCCCCCcchHHHHHHHHhcc--cEEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEee
Q 045657 39 ALSLKSIQ-TFIDD---QLNRGDEISQSLVYAIENSA--ISLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFYR 111 (227)
Q Consensus 39 ~L~~~g~~-~~~d~---~~~~g~~~~~~i~~~i~~s~--~~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~~ 111 (227)
.|..-|+. ..++. ++..|+.-.-.|..++...- ..+++-=|...-.+--..+|..++...+..+..||-|-++
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHd 440 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHD 440 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 45556664 22333 45556555556666665443 2444444555554555556666665555555566666544
No 286
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=79.07 E-value=1.2 Score=39.03 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=19.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-|.|+|.+|+|||||...+...
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~ 345 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLG 345 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Confidence 45679999999999999987653
No 287
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.91 E-value=1.5 Score=45.32 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=27.6
Q ss_pred HHHHHHHhh-cCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 184 VKEIESLLG-AESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 184 ~~~~~~~l~-~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
...|..+|. .+=...+.+-|+|..|+|||+||.++...
T Consensus 1412 ~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~e 1450 (2050)
T 3cmu_A 1412 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 1450 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 334555565 33234568889999999999999988665
No 288
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=78.42 E-value=0.79 Score=38.47 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=19.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
..-|+|+|..|+|||||..++..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g 53 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVG 53 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999988654
No 289
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=77.95 E-value=1.2 Score=42.58 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=20.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~ 219 (227)
...+++|.|..|.|||||.+.+.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHH
Confidence 45789999999999999999864
No 290
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=77.87 E-value=2.6 Score=39.55 Aligned_cols=37 Identities=27% Similarity=0.264 Sum_probs=24.9
Q ss_pred chhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 181 ESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
+.+.+.+...+. ..+.-|.|.+|.|||+++..+...+
T Consensus 359 ~~Q~~Av~~~l~-----~~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 359 HSQVYAVKTVLQ-----RPLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp HHHHHHHHHHHT-----SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-----CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 345555555443 1356689999999999888766553
No 291
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=77.81 E-value=1 Score=37.37 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=18.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~ 220 (227)
+-+-|.|..|+||||+|-+.-.
T Consensus 148 ~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4577899999999999987644
No 292
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=77.70 E-value=1.9 Score=37.86 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=19.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..--|.|+|..|.|||||...+...
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3445669999999999999987544
No 293
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=77.66 E-value=1.2 Score=42.61 Aligned_cols=22 Identities=27% Similarity=-0.005 Sum_probs=20.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAI 218 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v 218 (227)
..++++|.|..|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999999987
No 294
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=77.17 E-value=0.58 Score=44.81 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=18.7
Q ss_pred eEEEEEEcCCCchHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAI 218 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v 218 (227)
..+++|.|..|.|||||++.+
T Consensus 650 Geiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 650 GTFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp SSEEECCBCTTSSHHHHHTTT
T ss_pred CCEEEEEcCCCCCHHHHHHHH
Confidence 358999999999999999984
No 295
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=76.83 E-value=1.4 Score=34.38 Aligned_cols=20 Identities=35% Similarity=0.325 Sum_probs=16.3
Q ss_pred EEEEEEcCCCchHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAI 218 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v 218 (227)
+.+.++|..|.||||+....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHH
Confidence 46889999999999876653
No 296
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=76.22 E-value=1.4 Score=42.51 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=19.6
Q ss_pred eEEEEEEcCCCchHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAI 218 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v 218 (227)
.++++|.|..|.|||||.+.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 479999999999999999987
No 297
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=75.90 E-value=1.9 Score=37.98 Aligned_cols=24 Identities=25% Similarity=0.639 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
.-++|.|-.|+|||+|+..+.+.+
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~ 177 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNV 177 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeeeeecCCCCChHHHHHHHHHhh
Confidence 357899999999999999988775
No 298
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=75.67 E-value=0.94 Score=39.90 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=17.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 045657 200 TLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~ 221 (227)
-|.|+|..|+|||||.+.+.+.
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999986543
No 299
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=75.52 E-value=1.9 Score=36.75 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+..-|+|+|.+.+|||||-+++-+.
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~ 95 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGT 95 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSB
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCC
Confidence 4557899999999999999987653
No 300
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=75.48 E-value=1.8 Score=43.93 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=31.1
Q ss_pred ccchhHHHHHHHhh-cCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 179 GVESRVKEIESLLG-AESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 179 g~~~~~~~~~~~l~-~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
+......+|..+|. .+=....++-|.|.+|+||||||..+....
T Consensus 712 ~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 712 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 44444556666665 333345688899999999999999987663
No 301
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=74.51 E-value=2.2 Score=37.79 Aligned_cols=24 Identities=29% Similarity=0.722 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 045657 200 TLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
-++|.|-.|+|||+|+..+.+.+.
T Consensus 167 r~gIfgg~GvGKT~L~~~l~~~~a 190 (498)
T 1fx0_B 167 KIGLFGGAGVGKTVLIMELINNIA 190 (498)
T ss_dssp CEEEEECSSSSHHHHHHHHHHHTT
T ss_pred eEEeecCCCCCchHHHHHHHHHHH
Confidence 478999999999999998887753
No 302
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=74.35 E-value=3.7 Score=38.57 Aligned_cols=36 Identities=25% Similarity=0.205 Sum_probs=23.9
Q ss_pred chhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 181 ESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+.+.+.+...+. ..+.-|.|.+|.|||+++..+...
T Consensus 363 ~~Q~~Av~~~l~-----~~~~lI~GppGTGKT~~i~~~i~~ 398 (802)
T 2xzl_A 363 SSQSNAVSHVLQ-----RPLSLIQGPPGTGKTVTSATIVYH 398 (802)
T ss_dssp HHHHHHHHHHTT-----CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHHH
Confidence 445555555443 125668999999999987765443
No 303
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=72.96 E-value=2.6 Score=43.61 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=32.6
Q ss_pred ccccchhHHHHHHHhh-cCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 177 LVGVESRVKEIESLLG-AESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 177 ~~g~~~~~~~~~~~l~-~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..+.......|..+|. .+=...+++-|.|.+|+||||||..+....
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3444455566666665 232345688899999999999999987664
No 304
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=72.87 E-value=3.3 Score=37.20 Aligned_cols=25 Identities=40% Similarity=0.523 Sum_probs=18.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
..++-+.|.||+||||+|..+.-.+
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l 351 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRL 351 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCChhhHHHHHHHHH
Confidence 3445556999999999998876553
No 305
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=72.75 E-value=3.7 Score=37.08 Aligned_cols=25 Identities=32% Similarity=0.248 Sum_probs=21.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHH
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
....-|+|+|..+.|||||...+..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHH
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHH
Confidence 4567789999999999999988743
No 306
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=72.61 E-value=2.1 Score=43.48 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.+++=|+|..|.|||+||.++..+
T Consensus 1082 g~~~l~~G~~g~GKT~la~~~~~~ 1105 (1706)
T 3cmw_A 1082 GRIVEIYGPESSGKTTLTLQVIAA 1105 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCChHHHHHHHHHH
Confidence 567889999999999999998775
No 307
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=70.70 E-value=2.1 Score=40.89 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=42.0
Q ss_pred HHHhhCCCee-EEeC---CCCCCCcchHHHHHHHHhccc--EEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEee
Q 045657 38 SALSLKSIQT-FIDD---QLNRGDEISQSLVYAIENSAI--SLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFYR 111 (227)
Q Consensus 38 ~~L~~~g~~~-~~d~---~~~~g~~~~~~i~~~i~~s~~--~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~~ 111 (227)
..|..-|+.- ..+. ++..|+.-.-.|..++...-. .+++==|...-.+--..++...+...+..+..|+-|-++
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd 525 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD 525 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCC
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4455566642 2233 556666665677777765332 444444555555556666666666555455666666554
No 308
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=70.67 E-value=1.1 Score=39.50 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
-.|+|+|.+|+|||||.+.+.+.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~ 266 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNE 266 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCC
Confidence 45789999999999999988765
No 309
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=69.70 E-value=13 Score=27.38 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=43.7
Q ss_pred cHHHHHHHHHhhCCCeeEEeC-C---C-CCCC-------cchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHh
Q 045657 31 NFTSHLYSALSLKSIQTFIDD-Q---L-NRGD-------EISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCK 98 (227)
Q Consensus 31 ~~~~~L~~~L~~~g~~~~~d~-~---~-~~g~-------~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~ 98 (227)
.+...+.+.|++.| .|+..+ . + ..|. .+.+.-.+.|++|+++|++++ ..+.-...|+..+....
T Consensus 19 ~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~d~Gt~~EiG~A~alg 94 (152)
T 4fyk_A 19 ALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QPSLGVGYELGRAVALG 94 (152)
T ss_dssp HHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CCCCCHHHHHHHHHHcC
Confidence 47789999999999 776433 1 1 1222 255566678999999999988 44566777888776543
No 310
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=69.41 E-value=3.2 Score=37.12 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~ 219 (227)
.+|-++|+|-.+-|||||+..+.
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL 52 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLL 52 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEEEeCCCCCHHHHHHHHH
Confidence 58899999999999999999763
No 311
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=68.84 E-value=2.7 Score=38.21 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=18.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~ 219 (227)
.--|+|+|..|+|||||...+.
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll 188 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLL 188 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHH
T ss_pred ceEEEEEECCCCCHHHHHHHHH
Confidence 3456799999999999998864
No 312
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=68.65 E-value=1.5 Score=38.84 Aligned_cols=21 Identities=29% Similarity=0.196 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 045657 200 TLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~ 220 (227)
+..|+|..|.|||||..+++-
T Consensus 62 ~n~i~G~NGaGKS~lleAl~~ 82 (517)
T 4ad8_A 62 FCAFTGETGAGKSIIVDALGL 82 (517)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 778999999999999999864
No 313
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=67.13 E-value=6.4 Score=30.75 Aligned_cols=37 Identities=27% Similarity=0.175 Sum_probs=24.6
Q ss_pred cchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 180 VESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+.-+.+.+..++... + +-++|..|.|||.+|......
T Consensus 95 ~~~Q~~ai~~~~~~~----~-~ll~~~tG~GKT~~a~~~~~~ 131 (237)
T 2fz4_A 95 RDYQEKALERWLVDK----R-GCIVLPTGSGKTHVAMAAINE 131 (237)
T ss_dssp CHHHHHHHHHHTTTS----E-EEEEESSSTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCC----C-EEEEeCCCCCHHHHHHHHHHH
Confidence 444555555555421 2 557789999999999876554
No 314
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=66.51 E-value=3 Score=37.10 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=16.4
Q ss_pred eEEEEEEcCCCchHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIAR 216 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~ 216 (227)
-.++.+.|..|.|||||+.
T Consensus 213 g~~~~ffGlSGtGKTTLs~ 231 (524)
T 1ii2_A 213 GDVTVFFGLSGTGKTTLSA 231 (524)
T ss_dssp CCEEEEECCTTSSHHHHHC
T ss_pred CCEEEEEccCCcchhhhhh
Confidence 4578889999999999974
No 315
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=66.21 E-value=6.8 Score=28.31 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=37.7
Q ss_pred EEEccccccCCccHHHHHHHHHhhCCCeeEEeC-----------------CCCCC-C-cchHHHHHHHHhcccEEEEeec
Q 045657 19 VFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDD-----------------QLNRG-D-EISQSLVYAIENSAISLIIFSE 79 (227)
Q Consensus 19 vFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~-----------------~~~~g-~-~~~~~i~~~i~~s~~~i~v~S~ 79 (227)
||||.+..|.. -.-.+...|...|+.++--. ....| + .-.++|.+.|++-++-+||..+
T Consensus 27 vliSv~d~dK~--~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSFRP--RFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGGHH--HHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccchH--HHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 99999987743 34457778888888866211 11112 1 0003577777888888888777
Q ss_pred Cc
Q 045657 80 GY 81 (227)
Q Consensus 80 ~~ 81 (227)
+-
T Consensus 105 ~~ 106 (143)
T 2yvq_A 105 NN 106 (143)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 316
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=65.85 E-value=21 Score=26.31 Aligned_cols=81 Identities=11% Similarity=0.078 Sum_probs=51.0
Q ss_pred CCcccEEEccccc-cCCcc-HHHHHHHHHhhCCCeeEEeCCCC-----CCC-------cchHHHHHHHHhcccEEEEeec
Q 045657 14 INKYDVFLSFRGE-DTRDN-FTSHLYSALSLKSIQTFIDDQLN-----RGD-------EISQSLVYAIENSAISLIIFSE 79 (227)
Q Consensus 14 ~~~~dvFISy~~~-D~~~~-~~~~L~~~L~~~g~~~~~d~~~~-----~g~-------~~~~~i~~~i~~s~~~i~v~S~ 79 (227)
+++.-|||+=.-. +.... ..+.+.+.|++.| .|+.++... .|. .+...-.+.|++|+++|++++
T Consensus 9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~- 86 (165)
T 2khz_A 9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT- 86 (165)
T ss_dssp CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS-
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC-
Confidence 3445699873322 11111 4588999999999 886544221 221 122344578999999999987
Q ss_pred CcccchhhHHHHHHHHHHh
Q 045657 80 GYASSRWCLDELVKILQCK 98 (227)
Q Consensus 80 ~~~~S~wc~~El~~~~~~~ 98 (227)
..+.-+..|+..+....
T Consensus 87 --~~d~Gt~~EiGyA~alg 103 (165)
T 2khz_A 87 --QPSLGVGYELGRAVALG 103 (165)
T ss_dssp --SCCHHHHHHHHHHHHTC
T ss_pred --CCCCCHHHHHHHHHHCC
Confidence 44667778888776533
No 317
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=65.60 E-value=3.2 Score=37.03 Aligned_cols=18 Identities=39% Similarity=0.621 Sum_probs=15.9
Q ss_pred EEEEEEcCCCchHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIAR 216 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~ 216 (227)
.++.+.|..|.|||||+.
T Consensus 236 ~~~~ffGlSGtGKTTLs~ 253 (532)
T 1ytm_A 236 NTAIFFGLSGTGKTTLST 253 (532)
T ss_dssp SEEEEECCTTSSHHHHHC
T ss_pred eEEEEEecCCCCHHHHhh
Confidence 578889999999999984
No 318
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=65.18 E-value=3.3 Score=36.93 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.3
Q ss_pred eEEEEEEcCCCchHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIAR 216 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~ 216 (227)
-.++.+.|..|.|||||+.
T Consensus 241 g~~~lffGlSGtGKTTLs~ 259 (540)
T 2olr_A 241 GDVAVFFGLSGTGKTTLST 259 (540)
T ss_dssp SCEEEEECSTTSSHHHHHC
T ss_pred CCEEEEEccCCCCHHHHhc
Confidence 3578889999999999984
No 319
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=64.81 E-value=2.5 Score=37.02 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 045657 200 TLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~ 221 (227)
-++|.|-.|+|||+|+..+.+.
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~ 170 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQ 170 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHH
T ss_pred EEEEecCCCCCchHHHHHHHHH
Confidence 3678899999999999988876
No 320
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=64.75 E-value=2.9 Score=36.74 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 045657 200 TLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
-++|.|-.|+|||+|+..+.+..
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~ 176 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQA 176 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36778999999999999888763
No 321
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=64.46 E-value=2.9 Score=36.59 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 045657 201 LGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 201 ~~i~G~gG~GKTtla~~v~~~~ 222 (227)
++|.|-.|+|||+|+..+.+..
T Consensus 154 ~~Ifgg~G~GKt~L~~~Ia~~~ 175 (465)
T 3vr4_D 154 LPVFSGSGLPHKELAAQIARQA 175 (465)
T ss_dssp CCEEECTTSCHHHHHHHHHHHC
T ss_pred EEEeCCCCcChHHHHHHHHHHH
Confidence 6788999999999999888763
No 322
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=64.13 E-value=3.7 Score=36.92 Aligned_cols=23 Identities=30% Similarity=0.209 Sum_probs=19.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-++|.|-.|+|||+|+..+.+.
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~ 250 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKW 250 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCHHHHHHHHHhc
Confidence 35789999999999999988764
No 323
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=63.49 E-value=4.9 Score=36.28 Aligned_cols=23 Identities=26% Similarity=0.172 Sum_probs=20.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-++|.|-.|+|||+|+..+.+.
T Consensus 233 qr~~Ifgg~g~GKT~L~~~ia~~ 255 (600)
T 3vr4_A 233 GAAAVPGPFGAGKTVVQHQIAKW 255 (600)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEeeecCCCccHHHHHHHHHhc
Confidence 35789999999999999988765
No 324
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=62.78 E-value=5 Score=34.98 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHH
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~ 219 (227)
.....|+++|..+.|||||...+.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll 64 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNIL 64 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHHHH
Confidence 345678899999999999998764
No 325
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=62.24 E-value=6.1 Score=32.60 Aligned_cols=26 Identities=15% Similarity=0.026 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
..+|.+-|+-|.||+|..+.++..+.
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ld 111 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMN 111 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 55788889999999999999988754
No 326
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=61.96 E-value=1.9 Score=37.31 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=19.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHH
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIF 219 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~ 219 (227)
....-|+|+|..|+|||||...+.
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~ 55 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALV 55 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346679999999999999988653
No 327
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=61.93 E-value=3.3 Score=36.93 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.1
Q ss_pred eEEEEEEcCCCchHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIAR 216 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~ 216 (227)
-.++.+.|..|.|||||+.
T Consensus 225 g~~~~ffGlSGtGKTtLs~ 243 (529)
T 1j3b_A 225 GDVAVFFGLSGTGKTTLST 243 (529)
T ss_dssp CCEEEEEECTTSCHHHHTC
T ss_pred CcEEEEEccccCChhhHhh
Confidence 3577788999999999985
No 328
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=61.76 E-value=4.7 Score=36.22 Aligned_cols=23 Identities=26% Similarity=0.144 Sum_probs=20.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-++|.|-.|+|||+|+..+.+.
T Consensus 222 qr~~Ifg~~g~GKT~l~~~ia~~ 244 (578)
T 3gqb_A 222 GTAAIPGPFGSGKSVTQQSLAKW 244 (578)
T ss_dssp CEEEECCCTTSCHHHHHHHHHHH
T ss_pred CEEeeeCCCCccHHHHHHHHHhc
Confidence 35789999999999999988765
No 329
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=60.40 E-value=6.1 Score=33.81 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=17.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 045657 200 TLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~ 221 (227)
=+.|+|..|.|||++.+.+...
T Consensus 55 h~~i~G~tGsGKs~~~~~li~~ 76 (437)
T 1e9r_A 55 HLLVNGATGTGKSVLLRELAYT 76 (437)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999998776554
No 330
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=60.13 E-value=5 Score=42.75 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhcC
Q 045657 200 TLGIWGFGGIGKTTIARAIFDKISSN 225 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~v~~~~~~~ 225 (227)
-+.+.|.+|+|||++++.+.+.+..+
T Consensus 647 ~~~l~GpaGtGKTe~vk~LA~~lg~~ 672 (2695)
T 4akg_A 647 GGCFFGPAGTGKTETVKAFGQNLGRV 672 (2695)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTCC
T ss_pred CCcccCCCCCCcHHHHHHHHHHhCCc
Confidence 45678999999999999998876543
No 331
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=59.85 E-value=5 Score=35.47 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=29.8
Q ss_pred cCcccccchhHHHHHHHhhcCC----CCeEEEEEEcCCCchHHHHHHHH
Q 045657 174 KNQLVGVESRVKEIESLLGAES----KYVYTLGIWGFGGIGKTTIARAI 218 (227)
Q Consensus 174 ~~~~~g~~~~~~~~~~~l~~~~----~~~~~~~i~G~gG~GKTtla~~v 218 (227)
.+ ++|.+.-+..|.-.|..+. .+.. |-+.|.+|+ ||+||+.+
T Consensus 213 ap-I~G~e~vK~aLll~L~GG~~k~rgdih-VLL~G~PGt-KS~Lar~i 258 (506)
T 3f8t_A 213 AP-LPGAEEVGKMLALQLFSCVGKNSERLH-VLLAGYPVV-CSEILHHV 258 (506)
T ss_dssp CC-STTCHHHHHHHHHHHTTCCSSGGGCCC-EEEESCHHH-HHHHHHHH
T ss_pred cc-cCCCHHHHHHHHHHHcCCccccCCcee-EEEECCCCh-HHHHHHHH
Confidence 35 8898876666665555442 1122 557899999 99999999
No 332
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=59.33 E-value=4.7 Score=38.12 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=16.7
Q ss_pred EEEEEEcCCCchHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARA 217 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~ 217 (227)
.++.|.|..|.|||+||--
T Consensus 37 ~l~viTGvSGSGKSSLafd 55 (842)
T 2vf7_A 37 ALVVFTGVSGSGKSSLAFG 55 (842)
T ss_dssp SEEEEESSTTSSHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4788999999999999964
No 333
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=59.24 E-value=5.3 Score=35.45 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=17.6
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 045657 201 LGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 201 ~~i~G~gG~GKTtla~~v~~~ 221 (227)
+.|.|..|.||||+.+.+.-.
T Consensus 170 lLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 170 LLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999987554
No 334
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=59.13 E-value=5.6 Score=33.42 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=15.2
Q ss_pred EEEEEcCCCchHHHHHHH
Q 045657 200 TLGIWGFGGIGKTTIARA 217 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~ 217 (227)
-+-+.|.|+.||||+.+.
T Consensus 34 klLlLG~geSGKST~~KQ 51 (353)
T 1cip_A 34 KLLLLGAGESGKSTIVKQ 51 (353)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEEcCCCCCchhHHHH
Confidence 345779999999999886
No 335
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=57.60 E-value=7.6 Score=36.23 Aligned_cols=33 Identities=24% Similarity=0.179 Sum_probs=23.1
Q ss_pred hhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHH
Q 045657 182 SRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAI 218 (227)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v 218 (227)
.+...+...+.. ...+.|+|..|.||||+...+
T Consensus 97 ~q~~~i~~~l~~----~~~vii~gpTGSGKTtllp~l 129 (773)
T 2xau_A 97 AQRDEFLKLYQN----NQIMVFVGETGSGKTTQIPQF 129 (773)
T ss_dssp GGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHH
Confidence 345566666653 236788999999999966654
No 336
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=57.50 E-value=49 Score=23.52 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=41.4
Q ss_pred CCCCCcccE-EEccccccCCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHH-HHhcccEEEE
Q 045657 11 PRNINKYDV-FLSFRGEDTRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYA-IENSAISLII 76 (227)
Q Consensus 11 ~~~~~~~dv-FISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~-i~~s~~~i~v 76 (227)
.+..+..+| .|.-+. ....+|..+...|...|+.+=+|. ...++.+...|.++ ..+.-+.|||
T Consensus 3 ~~~~~P~Qv~IlpVs~--~~~~YA~~V~~~L~~~GiRvevD~-~r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 3 SGSSGPVDCSVIVVNK--QTKDYAESVGRKVRDLGMVVDLIF-LNTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp CCCCCCCTEEEEESSS--GGGHHHHHHHHHHHTTTCCEEEEE-CTTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCCCCeEEEEEeCc--chHHHHHHHHHHHHHCCCEEEEec-CCCCCcHHHHHHHHHHcCCCEEEEE
Confidence 344555666 344443 345699999999999999998863 12267787788877 4445544444
No 337
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=55.85 E-value=9.9 Score=31.40 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhc
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
+-+||=.=.||.|||-++-.+++.+++
T Consensus 38 VI~VGNitvGGTGKTP~vi~L~~~L~~ 64 (315)
T 4ehx_A 38 VISVGNLSVGGSGKTSFVMYLADLLKD 64 (315)
T ss_dssp EEEEEESBSSCCSHHHHHHHHHHHTTT
T ss_pred EEEECCEEeCCCChHHHHHHHHHHHhh
Confidence 334444568999999999999987654
No 338
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=55.85 E-value=16 Score=31.05 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=29.5
Q ss_pred hhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 182 SRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
+++..+.+.|.....+..+|+|.|. -||||.+..++.-++
T Consensus 33 ~r~~~~l~~lg~p~~~~~vI~VTGT--nGKtTT~~~l~~iL~ 72 (422)
T 1w78_A 33 ERVSLVAARLGVLKPAPFVFTVAGT--NGKGTTCRTLESILM 72 (422)
T ss_dssp HHHHHHHHHHTCSSCSSEEEEEECS--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccCCcEEEEeCC--cChHHHHHHHHHHHH
Confidence 3466666667655566889999988 589999998876543
No 339
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=53.83 E-value=5.6 Score=38.14 Aligned_cols=19 Identities=26% Similarity=0.400 Sum_probs=16.7
Q ss_pred EEEEEEcCCCchHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARA 217 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~ 217 (227)
.++.|.|..|.|||+||--
T Consensus 45 ~lvv~tG~SGSGKSSLafd 63 (972)
T 2r6f_A 45 KLVVLTGLSGSGKSSLAFD 63 (972)
T ss_dssp SEEEEEESTTSSHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 5788999999999999963
No 340
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=53.74 E-value=5.6 Score=38.23 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=16.7
Q ss_pred EEEEEEcCCCchHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARA 217 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~ 217 (227)
.++.|.|..|.||++||--
T Consensus 47 ~lvv~tG~SGSGKSSLafd 65 (993)
T 2ygr_A 47 ALIVFTGLSGSGKSSLAFD 65 (993)
T ss_dssp SEEEEEESTTSSHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 5788999999999999963
No 341
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=53.07 E-value=14 Score=32.61 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
+.++..++........+|-+-||-|.||+|..+.++..+.
T Consensus 29 L~~lQ~~~~~~~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~ 68 (500)
T 3czp_A 29 LLEAQFELKQQARFPVIILINGIEGAGKGETVKLLNEWMD 68 (500)
T ss_dssp HHHHHHHHHHHCCCCEEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcCCCCHHHHHHHHHHhcC
Confidence 3344444443223456778889999999999999998754
No 342
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=51.48 E-value=8.5 Score=33.00 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=15.1
Q ss_pred EEEEEcCCCchHHHHHHH
Q 045657 200 TLGIWGFGGIGKTTIARA 217 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~ 217 (227)
-+-+.|.|..||||+.++
T Consensus 42 klLLLG~geSGKSTi~KQ 59 (402)
T 1azs_C 42 RLLLLGAGESGKSTIVKQ 59 (402)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred eEEEecCCCCchhhHHHH
Confidence 345679999999999986
No 343
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=51.48 E-value=21 Score=30.69 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=28.3
Q ss_pred hhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 182 SRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
+.++.+.+.|........+|+|.|.. ||||.+..+..-+
T Consensus 36 ~r~~~ll~~lg~p~~~~~vI~VtGTN--GKgSt~~~l~~iL 74 (437)
T 3nrs_A 36 ERVKQVAERLDLLKPAPKIFTVAGTN--GKGTTCCTLEAIL 74 (437)
T ss_dssp HHHHHHHHHTTCSCSSSEEEEEECSS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccccCCEEEEECCc--ChHHHHHHHHHHH
Confidence 35666666665545568999999985 8999998776643
No 344
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=50.96 E-value=38 Score=28.60 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=40.2
Q ss_pred CcccEEEccccccCCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHH-HHhcccEEEE
Q 045657 15 NKYDVFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYA-IENSAISLII 76 (227)
Q Consensus 15 ~~~dvFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~-i~~s~~~i~v 76 (227)
..++|+|---+.+ ....+..|...|+..|+.|-+|.. +..+...+..| .......|+|
T Consensus 297 ap~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~k~~~A~~~g~p~~iii 355 (401)
T 1evl_A 297 APVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLVC 355 (401)
T ss_dssp CSSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEEE
T ss_pred CCeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEE
Confidence 4588987755443 345889999999999999999861 34566666666 4455555544
No 345
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=49.73 E-value=8.6 Score=34.09 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHH-HHHHHHhh
Q 045657 200 TLGIWGFGGIGKTTIA-RAIFDKIS 223 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla-~~v~~~~~ 223 (227)
-++|.|-.|+|||+|| ..+.|...
T Consensus 164 R~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 164 RELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp BCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred EEEEecCCCCCchHHHHHHHHHHHh
Confidence 4788999999999994 56666543
No 346
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=49.49 E-value=7.7 Score=34.41 Aligned_cols=22 Identities=36% Similarity=0.344 Sum_probs=17.7
Q ss_pred EEEEEcCCCchHHHHH-HHHHHH
Q 045657 200 TLGIWGFGGIGKTTIA-RAIFDK 221 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla-~~v~~~ 221 (227)
-++|.|-.|+|||+|| ..+.+.
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~ 199 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQ 199 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCccHHHHHHHHHh
Confidence 4789999999999995 466654
No 347
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=49.24 E-value=66 Score=23.67 Aligned_cols=67 Identities=9% Similarity=0.082 Sum_probs=45.3
Q ss_pred cHHHHHHHHHhhC--CCeeEEeC-CC----CCCC----cchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHh
Q 045657 31 NFTSHLYSALSLK--SIQTFIDD-QL----NRGD----EISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCK 98 (227)
Q Consensus 31 ~~~~~L~~~L~~~--g~~~~~d~-~~----~~g~----~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~ 98 (227)
.+...+.++|+.+ |+.+|.-. +- ..+. .+...-.++|.+|+++|+++. ....+..+..|+..+....
T Consensus 20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~g 97 (162)
T 3ehd_A 20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAKG 97 (162)
T ss_dssp HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHCC
Confidence 3778899999875 88887633 11 1122 234444567999999999995 3345677888988877543
No 348
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=48.69 E-value=7.7 Score=34.31 Aligned_cols=22 Identities=41% Similarity=0.373 Sum_probs=17.7
Q ss_pred EEEEEcCCCchHHHHH-HHHHHH
Q 045657 200 TLGIWGFGGIGKTTIA-RAIFDK 221 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla-~~v~~~ 221 (227)
-++|.|-.|+|||+|| ..+.+.
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~ 186 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQ 186 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGG
T ss_pred EEEEECCCCCCchHHHHHHHHHh
Confidence 4788999999999995 466654
No 349
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=47.98 E-value=43 Score=28.74 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=39.8
Q ss_pred CCcccEEEccccccCCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHHH-HhcccEEEE
Q 045657 14 INKYDVFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYAI-ENSAISLII 76 (227)
Q Consensus 14 ~~~~dvFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i-~~s~~~i~v 76 (227)
....||+|...+.+.. ..+..|...|.++||++-+|. ..+..+...+..|- .+...+|+|
T Consensus 364 ~~~~~v~v~~~~~~~~-~~a~~l~~~Lr~~Gi~ve~~~--~~~~~l~~q~k~A~~~g~~~~vii 424 (464)
T 4g84_A 364 TTETQVLVASAQKKLL-EERLKLVSELWDAGIKAELLY--KKNPKLLNQLQYCEEAGIPLVAII 424 (464)
T ss_dssp SCCCCEEEECSSSSCH-HHHHHHHHHHHHTTCCEECCS--CSSCCHHHHHHHHHHHTCCEEEEC
T ss_pred cccceEEEEeCCHHHH-HHHHHHHHHHHHCCCcEEEEe--CCCCCHHHHHHHHHHCCCCEEEEE
Confidence 4567899987665533 467889999999999997764 22334556666663 345544444
No 350
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=46.98 E-value=16 Score=34.06 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+...|+|+|..+.|||||..++...
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~ 74 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGR 74 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4668899999999999999988653
No 351
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=46.88 E-value=55 Score=28.67 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=39.6
Q ss_pred CCcccEEEccccccCCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHHH-HhcccEEEE
Q 045657 14 INKYDVFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYAI-ENSAISLII 76 (227)
Q Consensus 14 ~~~~dvFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i-~~s~~~i~v 76 (227)
...+||||..-+.+. ...+..|...|.++||++-++. ..+..+...+..|- .+...+|+|
T Consensus 417 ~~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~--~~~~~l~~q~k~A~~~g~~~~vii 477 (517)
T 4g85_A 417 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLY--KKNPKLLNQLQYCEEAGIPLVAII 477 (517)
T ss_dssp SCCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECS--SSSCCHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEe--CCCCCHHHHHHHHHHCCCCEEEEE
Confidence 456899987655443 3468889999999999997764 22334556666663 345544444
No 352
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=46.59 E-value=19 Score=35.53 Aligned_cols=26 Identities=35% Similarity=0.318 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 196 KYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 196 ~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.....|+|+|-.+.|||||...+...
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 34567899999999999999987654
No 353
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=45.25 E-value=41 Score=29.13 Aligned_cols=61 Identities=7% Similarity=0.002 Sum_probs=40.3
Q ss_pred CCcccEEEccccccCCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHHHHhcccEEEEee
Q 045657 14 INKYDVFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYAIENSAISLIIFS 78 (227)
Q Consensus 14 ~~~~dvFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S 78 (227)
...+||+|-.-+.+. ...+..+...|+++|+.|-+|.. +..+...+..|-..---.++++.
T Consensus 369 ~~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~---~~sl~~q~k~A~~~g~p~~iiiG 429 (465)
T 3net_A 369 PTPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFE---KRQLGKQFQAADKQGIRFCVIIG 429 (465)
T ss_dssp SCSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHHTCCEEEECC
T ss_pred CCCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHcCCCEEEEEC
Confidence 346899987655443 34788999999999999998762 24455566666443333445544
No 354
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=45.18 E-value=7.7 Score=34.35 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=17.6
Q ss_pred EEEEEcCCCchHHHHH-HHHHHH
Q 045657 200 TLGIWGFGGIGKTTIA-RAIFDK 221 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla-~~v~~~ 221 (227)
-++|.|-.|+|||+|| ..+.+.
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~ 187 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQ 187 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTC
T ss_pred EEEEecCCCCCccHHHHHHHHHh
Confidence 4788999999999995 466654
No 355
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=44.35 E-value=20 Score=30.62 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=26.6
Q ss_pred hHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 183 RVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
++.++.+.|.....+..+|+|.|. -||||.+..++.-++
T Consensus 24 ~~~~~l~~lg~p~~~~~vI~VtGT--nGKtTT~~~l~~iL~ 62 (428)
T 1jbw_A 24 RILTLLHALGNPQQQGRYIHVTGT--NGKGSAANAIAHVLE 62 (428)
T ss_dssp HHHHHHHHTTCGGGSSCEEEEECS--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchhcCcEEEEECC--CChHHHHHHHHHHHH
Confidence 344455555433345789999888 589999998877543
No 356
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=44.17 E-value=23 Score=30.40 Aligned_cols=38 Identities=26% Similarity=0.279 Sum_probs=26.3
Q ss_pred hHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 183 RVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
++..+.+.|........+|+|.|. -||||.+..+..-+
T Consensus 37 ~~~~~l~~lg~p~~~~~vI~VTGT--nGKtTT~~~l~~iL 74 (442)
T 1o5z_A 37 RISMLLSKLGNPHLEYKTIHIGGT--NGKGSVANMVSNIL 74 (442)
T ss_dssp HHHHHHHHTTCGGGSSEEEEEECS--SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchhcCCEEEEECC--cCHHHHHHHHHHHH
Confidence 455555555433345789999887 58999999877654
No 357
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=43.31 E-value=15 Score=39.20 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=19.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
.-|-++|..|.||||+.+.+.+.
T Consensus 924 ~gvmlvGptgsGKTt~~~~La~a 946 (2695)
T 4akg_A 924 QALILVGKAGCGKTATWKTVIDA 946 (2695)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999987765
No 358
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=42.06 E-value=52 Score=28.03 Aligned_cols=57 Identities=16% Similarity=0.241 Sum_probs=38.1
Q ss_pred cccEEEccccccCCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHH-HHhcccEEEE
Q 045657 16 KYDVFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYA-IENSAISLII 76 (227)
Q Consensus 16 ~~dvFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~-i~~s~~~i~v 76 (227)
.+||+|-.-+.+ ....+..+...|+.+|+.|-+|.. +..+...+..| .......|+|
T Consensus 332 p~~v~v~~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~~~~iii 389 (434)
T 1wu7_A 332 KKSVYICRVGKI-NSSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAVIF 389 (434)
T ss_dssp SCEEEEEEESSC-CHHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCcEEEEEcChH-HHHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHCCCCEEEEE
Confidence 489986655444 334788999999999999998861 23455556655 4455554444
No 359
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=42.05 E-value=43 Score=28.37 Aligned_cols=59 Identities=14% Similarity=0.245 Sum_probs=40.1
Q ss_pred CCcccEEEccccccCCccHHHHHHHHHhhC--CCeeEEeCCCCCCCcchHHHHHH-HHhcccEEEE
Q 045657 14 INKYDVFLSFRGEDTRDNFTSHLYSALSLK--SIQTFIDDQLNRGDEISQSLVYA-IENSAISLII 76 (227)
Q Consensus 14 ~~~~dvFISy~~~D~~~~~~~~L~~~L~~~--g~~~~~d~~~~~g~~~~~~i~~~-i~~s~~~i~v 76 (227)
...+||+|-+-+.+ ....+..|...|+++ |+.|-+|.. +..+...+..| .......|+|
T Consensus 325 ~~p~~v~i~~~~~~-~~~~a~~l~~~Lr~~~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p~~iii 386 (423)
T 1htt_A 325 DPVVDIYLVASGAD-TQSAAMALAERLRDELPGVKLMTNHG---GGNFKKQFARADKWGARVAVVL 386 (423)
T ss_dssp CCSCSEEEEECSTT-HHHHHHHHHHHHHHHSTTCCEEECCS---CCCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCcEEEEEcCHH-HHHHHHHHHHHHHcCCCCcEEEEeCC---CCCHHHHHHHHHHcCCCEEEEE
Confidence 35679988875543 334788999999999 999998861 23555566666 4455555544
No 360
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=42.00 E-value=25 Score=38.33 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.8
Q ss_pred EEEcCCCchHHHHHHHHHH
Q 045657 202 GIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 202 ~i~G~gG~GKTtla~~v~~ 220 (227)
-++|.||.||++|+|.+..
T Consensus 1650 LLVGvgGSGkqSLtrLAa~ 1668 (3245)
T 3vkg_A 1650 LLIGVSGGGKSVLSRFVAW 1668 (3245)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEecCCCCcHHHHHHHHHH
Confidence 3679999999999997643
No 361
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=40.90 E-value=24 Score=30.84 Aligned_cols=39 Identities=28% Similarity=0.457 Sum_probs=27.3
Q ss_pred hhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 045657 182 SRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDKI 222 (227)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~~ 222 (227)
++++.+.+.|........+|+|.|.. ||||.+..+..-+
T Consensus 48 ~r~~~ll~~lg~p~~~~~vI~VtGTN--GKtST~~~l~~iL 86 (487)
T 2vos_A 48 TRISALMDLLGSPQRSYPSIHIAGTN--GKTSVARMVDALV 86 (487)
T ss_dssp HHHHHHHHHTTCGGGSSCEEEEECSS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhcCeEEEEeCCC--CcHHHHHHHHHHH
Confidence 34556666664333457899999885 8999999877654
No 362
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=40.55 E-value=12 Score=24.21 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=24.1
Q ss_pred HHHhcccEEEEeecCcccchhhHHHHHHHHHHh
Q 045657 66 AIENSAISLIIFSEGYASSRWCLDELVKILQCK 98 (227)
Q Consensus 66 ~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~ 98 (227)
.++++.++++|||++--...||...+..++++-
T Consensus 36 vLCdaeV~livfs~~gk~~~~~s~~~~~il~ry 68 (77)
T 1egw_A 36 VLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (77)
T ss_dssp HHTTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred cccCCeEEEEEECCCCCEeeCCCCCHHHHHHHH
Confidence 478999999999998666666655555555544
No 363
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=40.44 E-value=16 Score=27.20 Aligned_cols=36 Identities=22% Similarity=0.119 Sum_probs=22.7
Q ss_pred cchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 045657 180 VESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
+.-+.+.+..++.. +-+-|++..|.|||.++.....
T Consensus 35 ~~~Q~~~i~~~~~~-----~~~li~~~tGsGKT~~~~~~~~ 70 (216)
T 3b6e_A 35 RPYQMEVAQPALEG-----KNIIICLPTGSGKTRVAVYIAK 70 (216)
T ss_dssp CHHHHHHHHHHHTT-----CCEEEECSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcC-----CCEEEEcCCCCCHHHHHHHHHH
Confidence 33445555555532 1245679999999998876544
No 364
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=39.68 E-value=57 Score=28.12 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=37.9
Q ss_pred CcccEEEcccc--ccCCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHH-HHhcccEEEE
Q 045657 15 NKYDVFLSFRG--EDTRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYA-IENSAISLII 76 (227)
Q Consensus 15 ~~~dvFISy~~--~D~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~-i~~s~~~i~v 76 (227)
..++|+|---. .+.....+..|+..|+..|+.|.+|+. +..+...+..| .......|+|
T Consensus 364 ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~---~~~~g~k~~~ad~~g~p~~iiv 425 (458)
T 2i4l_A 364 APFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDT---DQRAGAKFATADLIGIPWQIHV 425 (458)
T ss_dssp CSCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECS---SCCHHHHHHHHHHHTCSEEEEE
T ss_pred CCceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEE
Confidence 45788776332 122345789999999999999999971 23444555555 4455555444
No 365
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=38.49 E-value=57 Score=28.30 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=41.3
Q ss_pred CcccEEEccccccCCccHHHHHHHHHhhCCCeeEEeCC-CCCCCcchHHHHHHHHhcccEEEEee
Q 045657 15 NKYDVFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDDQ-LNRGDEISQSLVYAIENSAISLIIFS 78 (227)
Q Consensus 15 ~~~dvFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~~-~~~g~~~~~~i~~~i~~s~~~i~v~S 78 (227)
...||+|-.-+.+. ...+..+...|+.+|+.|-+|.. -..+..+...+..|-+.---.++|+.
T Consensus 353 ~p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG 416 (467)
T 4e51_A 353 EGVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFG 416 (467)
T ss_dssp CCCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 45789876554433 34788999999999999998752 11256777777777544333444443
No 366
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=37.98 E-value=23 Score=31.84 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=17.7
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 045657 201 LGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 201 ~~i~G~gG~GKTtla~~v~~~ 221 (227)
+.|.|..|.|||++.+.+.-.
T Consensus 217 lLIaG~TGSGKS~~L~tlI~s 237 (574)
T 2iut_A 217 LLVAGTTGSGKSVGVNAMLLS 237 (574)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999986655
No 367
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=37.28 E-value=15 Score=32.62 Aligned_cols=36 Identities=28% Similarity=0.304 Sum_probs=23.3
Q ss_pred HHHHHHHhhcCCCCeEEEEEEcCCCchHHHHH-HHHHHH
Q 045657 184 VKEIESLLGAESKYVYTLGIWGFGGIGKTTIA-RAIFDK 221 (227)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla-~~v~~~ 221 (227)
++.+..++.-+..+ -++|.|-.|+|||+|+ ..+.|.
T Consensus 150 ikaID~l~PigrGQ--R~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 150 YKAVDSMIPIGRGQ--RELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp CHHHHHHSCCBTTC--BCEEEESSSSSHHHHHHHHHHTT
T ss_pred eeeeccccccccCC--EEEeecCCCCCcchHHHHHHHhh
Confidence 44444444333323 4788999999999996 556553
No 368
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=36.74 E-value=94 Score=21.68 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=22.9
Q ss_pred CCCCcchHHHHHHHHhcccEEEEeecCc
Q 045657 54 NRGDEISQSLVYAIENSAISLIIFSEGY 81 (227)
Q Consensus 54 ~~g~~~~~~i~~~i~~s~~~i~v~S~~~ 81 (227)
.|++.+.+.+.+.|.+++..|.+.++.+
T Consensus 10 ~p~~~~~~~~~~~i~~A~~~I~i~~~~~ 37 (155)
T 1byr_A 10 SPEGSARVLVLSAIDSAKTSIRMMAYSF 37 (155)
T ss_dssp ETTTHHHHHHHHHHHHCSSEEEEEESSB
T ss_pred CCCCcHHHHHHHHHHHHhhEEEEEEEEe
Confidence 4566777889999999999999988766
No 369
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=36.59 E-value=16 Score=24.34 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=24.7
Q ss_pred HHHhcccEEEEeecCcccchhhHHHHHHHHHHh
Q 045657 66 AIENSAISLIIFSEGYASSRWCLDELVKILQCK 98 (227)
Q Consensus 66 ~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~ 98 (227)
.++++.++++|||++---..||...+..++++-
T Consensus 36 vLCda~Valiifs~~gk~~~f~s~~~~~il~rY 68 (90)
T 3p57_A 36 VLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (90)
T ss_dssp HHHTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred hccCCceEEEEECCCCCEEEeCCCCHHHHHHHH
Confidence 478999999999998666667665566666554
No 370
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=33.62 E-value=31 Score=32.39 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=22.0
Q ss_pred eEEEEEEcC-CCchHHHHHHHHHHHhhc
Q 045657 198 VYTLGIWGF-GGIGKTTIARAIFDKISS 224 (227)
Q Consensus 198 ~~~~~i~G~-gG~GKTtla~~v~~~~~~ 224 (227)
.+.+-|.|. .|+|||+++..+++.+..
T Consensus 34 ~~~l~I~gt~s~vGKT~vt~gL~r~l~~ 61 (831)
T 4a0g_A 34 HPTYLIWSANTSLGKTLVSTGIAASFLL 61 (831)
T ss_dssp SCEEEEEESSSSSCHHHHHHHHHHHHHS
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456888999 599999999998887544
No 371
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=32.90 E-value=26 Score=38.13 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhc
Q 045657 201 LGIWGFGGIGKTTIARAIFDKISS 224 (227)
Q Consensus 201 ~~i~G~gG~GKTtla~~v~~~~~~ 224 (227)
..+.|.+|+|||++++.+...++.
T Consensus 607 g~~~GPaGtGKTet~k~La~~lgr 630 (3245)
T 3vkg_A 607 GNPFGPAGTGKTETVKALGSQLGR 630 (3245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999998877543
No 372
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=32.80 E-value=52 Score=27.79 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=38.1
Q ss_pred CCcccEEEccccccCCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHH-HHhcccEEEE
Q 045657 14 INKYDVFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYA-IENSAISLII 76 (227)
Q Consensus 14 ~~~~dvFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~-i~~s~~~i~v 76 (227)
...++|+|-.-+.+. ...+..|...|+.+|+.|-+|.. +..+...+..+ .......|+|
T Consensus 327 ~~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p~~iii 386 (420)
T 1qe0_A 327 EENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL---QRKIKGQMKQADRLGAKFTIVI 386 (420)
T ss_dssp CCCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS---CCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEecC---CCCHHHHHHHHHHcCCCEEEEE
Confidence 355789877544332 34788999999999999999861 23455556665 3345444443
No 373
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=32.61 E-value=1e+02 Score=26.57 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=39.8
Q ss_pred CcccEEEccccccCCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHHHHhcccEEEEee
Q 045657 15 NKYDVFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYAIENSAISLIIFS 78 (227)
Q Consensus 15 ~~~dvFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S 78 (227)
...||||..-+.+.. ..+-.+...|+++|+.|-++.. +..+...+..|-+.--..++++.
T Consensus 360 ~~~~v~v~~~~~~~~-~~a~~la~~LR~~Gi~ve~~~~---~~slkkq~k~A~k~ga~~vviiG 419 (456)
T 3lc0_A 360 HVVDDVVIPFDESMR-PHALAVLRRLRDAGRSADIILD---KKKVVQAFNYADRVGAVRAVLVA 419 (456)
T ss_dssp CCEEEEEEESSGGGH-HHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHTTEEEEEEEC
T ss_pred CCCcEEEEEcCHHHH-HHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHcCCCEEEEEC
Confidence 457888776555543 3677899999999999988741 23466677777554434455544
No 374
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=32.55 E-value=43 Score=27.26 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.-+|.+-||-|.||.+..+.+...+.
T Consensus 75 ~vlIvfEG~DaAGKgg~Ik~l~~~ld 100 (289)
T 3rhf_A 75 RLLLILQAMDTAGKGGIVSHVVGAMD 100 (289)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cEEEEEECCCCCChHHHHHHHHHhcC
Confidence 45677779999999999999998753
No 375
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=32.15 E-value=36 Score=21.56 Aligned_cols=39 Identities=8% Similarity=0.188 Sum_probs=27.5
Q ss_pred HHHHHHHHhhCCCeeEEeC-CCC---CCCcchHHHHHHHHhcc
Q 045657 33 TSHLYSALSLKSIQTFIDD-QLN---RGDEISQSLVYAIENSA 71 (227)
Q Consensus 33 ~~~L~~~L~~~g~~~~~d~-~~~---~g~~~~~~i~~~i~~s~ 71 (227)
+..|...|+.+||..|.+. .+. |-..+.+++...+...+
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K 49 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR 49 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHHH
Confidence 4467799999999999987 432 33456667777766654
No 376
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=30.84 E-value=1e+02 Score=26.85 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=31.6
Q ss_pred cCCccHHHHHHHHHhhCCCeeE--EeCCCCCCCcchHHHHHH-HHhcccEEEEeecC
Q 045657 27 DTRDNFTSHLYSALSLKSIQTF--IDDQLNRGDEISQSLVYA-IENSAISLIIFSEG 80 (227)
Q Consensus 27 D~~~~~~~~L~~~L~~~g~~~~--~d~~~~~g~~~~~~i~~~-i~~s~~~i~v~S~~ 80 (227)
|....+|..|+..|++.||.|. +|+ ..+..+...+.++ ...... +|++.++
T Consensus 361 e~~~~~A~~L~~~Lr~~GIrV~~d~Dd--r~~~siGkK~r~Ad~iGiPy-~IiVG~k 414 (459)
T 3ikl_A 361 LELRQVCQGLFNELLENGISVWPGYLE--TMQSSLEQLYSKYDEMSILF-TVLVTET 414 (459)
T ss_dssp TTHHHHHHHHHHHHHHTSCCEECGGGS--SSCCTTHHHHHHHGGGTCSE-EEEECTT
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeecC--CcCCCHHHHHHHHHHcCCCE-EEEECch
Confidence 4445689999999999999998 553 2133454555555 334444 4444433
No 377
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=30.55 E-value=84 Score=23.13 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHhhC--CCeeEEeCC--C--------CCC--------CcchHHHHHHHHhcccEEEEeecCcccchhhHH
Q 045657 30 DNFTSHLYSALSLK--SIQTFIDDQ--L--------NRG--------DEISQSLVYAIENSAISLIIFSEGYASSRWCLD 89 (227)
Q Consensus 30 ~~~~~~L~~~L~~~--g~~~~~d~~--~--------~~g--------~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~ 89 (227)
..+.+.+.+.|+.. |+.+|.-.+ . ..+ ..|...-.++|++|+++|+++..... ++-+..
T Consensus 22 ~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vVA~ldg~~~-D~GTa~ 100 (167)
T 1s2d_A 22 RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVFLYDMDQL-DDGSAF 100 (167)
T ss_dssp HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEEEEEESSSC-CHHHHH
T ss_pred HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEEEECCCCCC-CCCcee
Confidence 34788999999999 888875332 1 111 12334555779999999999987554 456677
Q ss_pred HHHHHHHHh
Q 045657 90 ELVKILQCK 98 (227)
Q Consensus 90 El~~~~~~~ 98 (227)
|+-.+....
T Consensus 101 EiGyA~alg 109 (167)
T 1s2d_A 101 XIGFMRAMH 109 (167)
T ss_dssp HHHHHHHTT
T ss_pred ehhhHhhCC
Confidence 887776543
No 378
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=29.92 E-value=41 Score=29.57 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=38.7
Q ss_pred CcccEEEccc-ccc---CCccHHHHHHHHHhhCCCeeEEeC-CCCCCCcchHHHHHH-HHhcccEEEE
Q 045657 15 NKYDVFLSFR-GED---TRDNFTSHLYSALSLKSIQTFIDD-QLNRGDEISQSLVYA-IENSAISLII 76 (227)
Q Consensus 15 ~~~dvFISy~-~~D---~~~~~~~~L~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~-i~~s~~~i~v 76 (227)
..|+|+|--- +++ .....|..|...|+..|+.|-+|+ + ..+...+..+ .....+.|+|
T Consensus 313 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~----~s~g~k~~~a~~~G~p~~iii 376 (501)
T 1nj1_A 313 AAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRD----IRAGRKYYEWEMRGVPLRVEI 376 (501)
T ss_dssp SSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCS----SCHHHHHHHHHHEECSEEEEE
T ss_pred cCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCC----CCHHHHHHHHHhcCCCEEEEE
Confidence 5688877654 322 334588999999999999999987 3 3444555555 4455555444
No 379
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=29.27 E-value=65 Score=24.13 Aligned_cols=49 Identities=16% Similarity=0.269 Sum_probs=33.7
Q ss_pred EEccccccC--CccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHHHHh
Q 045657 20 FLSFRGEDT--RDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYAIEN 69 (227)
Q Consensus 20 FISy~~~D~--~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~ 69 (227)
||.+-|.|- ..+-+..|.+.|+.+|+.+..-. .+.|..+.+.+.+.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr-eP~~t~~~~~ir~~l~~ 52 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR-EPGGTETGEKIRKILLE 52 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-SSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE-CCCCCcHHHHHHHHhhc
Confidence 888888885 35678999999999999876543 23345555555554443
No 380
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=29.15 E-value=67 Score=28.19 Aligned_cols=58 Identities=9% Similarity=0.065 Sum_probs=39.5
Q ss_pred CcccEEEccccc-c-CCccHHHHHHHHHhhCC-CeeEEeCCCCCCCcchHHHHHH-HHhcccEEEE
Q 045657 15 NKYDVFLSFRGE-D-TRDNFTSHLYSALSLKS-IQTFIDDQLNRGDEISQSLVYA-IENSAISLII 76 (227)
Q Consensus 15 ~~~dvFISy~~~-D-~~~~~~~~L~~~L~~~g-~~~~~d~~~~~g~~~~~~i~~~-i~~s~~~i~v 76 (227)
..++|+|---+. + .....|..|...|+..| +.|.+|+. ..+...+.++ .......|+|
T Consensus 397 aP~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D~~----~sig~k~~~ad~~g~p~~iiv 458 (505)
T 1ati_A 397 APIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDT----GNIGKAYRRHDEVGTPFAVTV 458 (505)
T ss_dssp CSCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCC----SCHHHHHHHHHHTTCSEEEEE
T ss_pred CCceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEECCC----CCHHHHHHHHHHCCCCEEEEE
Confidence 458998775443 1 23457899999999999 99998763 3666677766 3345554444
No 381
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=28.75 E-value=1.4e+02 Score=27.32 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=39.7
Q ss_pred CcccEEEcccccc-CCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHH-HHhcccEEEE
Q 045657 15 NKYDVFLSFRGED-TRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYA-IENSAISLII 76 (227)
Q Consensus 15 ~~~dvFISy~~~D-~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~-i~~s~~~i~v 76 (227)
..++|+|---+.+ .....+..|...|+..|+.|.+|. .+..+...+.++ .......|+|
T Consensus 558 AP~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~---~~~sigkk~k~Ad~~G~p~~IiI 618 (693)
T 2zt5_A 558 APFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDD---SSGSIGRRYARTDEIGVAFGVTI 618 (693)
T ss_dssp SSCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECC---CCSCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEEC---CCCCHHHHHHHHHHcCCCEEEEE
Confidence 3578887655443 244589999999999999999986 123555666666 3455554444
No 382
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=28.66 E-value=1.1e+02 Score=22.39 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHhhCCCeeEE-eC-CCCCCCc---------ch-HHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHH
Q 045657 30 DNFTSHLYSALSLKSIQTFI-DD-QLNRGDE---------IS-QSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQC 97 (227)
Q Consensus 30 ~~~~~~L~~~L~~~g~~~~~-d~-~~~~g~~---------~~-~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~ 97 (227)
...++.+.+.|+..|+.+-+ +- +...... .. ......+.+++ .|++-||.|..+. ...+..++++
T Consensus 20 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD-~ii~gsP~y~~~~--~~~lk~~ld~ 96 (200)
T 2a5l_A 20 AEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCA-GLALGSPTRFGNM--ASPLKYFLDG 96 (200)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCS-EEEEEEECBTTBC--CHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCC-EEEEEcChhccCc--cHHHHHHHHH
Confidence 45888889999988887633 22 2211000 00 01245677777 4566688887553 2334444443
No 383
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=28.35 E-value=18 Score=23.74 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=15.8
Q ss_pred EEccccccCCccHHHHHHHHHhhCCC
Q 045657 20 FLSFRGEDTRDNFTSHLYSALSLKSI 45 (227)
Q Consensus 20 FISy~~~D~~~~~~~~L~~~L~~~g~ 45 (227)
|+||++......|+..|.+.|++.+-
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~~ 46 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYAC 46 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHTT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhCC
Confidence 44555554433488888888876543
No 384
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=27.75 E-value=57 Score=22.40 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=21.6
Q ss_pred CcchHHHHHHHHhcccEEEEeecCcccchhhHH
Q 045657 57 DEISQSLVYAIENSAISLIIFSEGYASSRWCLD 89 (227)
Q Consensus 57 ~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~ 89 (227)
-.....+.+.+...+ |+|||+.....+||..
T Consensus 7 ~~~~~~v~~~i~~~~--Vvvfsk~t~~~p~Cp~ 37 (118)
T 2wem_A 7 GGSAEQLDALVKKDK--VVVFLKGTPEQPQCGF 37 (118)
T ss_dssp --CHHHHHHHHHHSS--EEEEESBCSSSBSSHH
T ss_pred ccHHHHHHHHhccCC--EEEEEecCCCCCccHH
Confidence 344567888888888 7888887666666754
No 385
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=26.89 E-value=1e+02 Score=27.29 Aligned_cols=59 Identities=8% Similarity=0.269 Sum_probs=38.9
Q ss_pred CcccEEEcccc-c-cCCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHH-HHhcccEEEE
Q 045657 15 NKYDVFLSFRG-E-DTRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYA-IENSAISLII 76 (227)
Q Consensus 15 ~~~dvFISy~~-~-D~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~-i~~s~~~i~v 76 (227)
..++|+|---+ + +.....+..|...|+..|+.|-+|.. +..+...+..| .......|+|
T Consensus 469 ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~---~~~~g~k~~~a~~~g~p~~iiv 530 (572)
T 2j3l_A 469 APFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDR---NERAGVKFADADLIGCPIRITV 530 (572)
T ss_dssp SSCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECS---SCCHHHHHHHHHHHCCSEEEEE
T ss_pred CCeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCC---CCCHhHHHHHHHhcCCCEEEEE
Confidence 34789876544 1 22334788999999999999999861 23555666666 4455554444
No 386
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=26.82 E-value=64 Score=24.01 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=13.0
Q ss_pred EEEEcCCCchHHHHHHH
Q 045657 201 LGIWGFGGIGKTTIARA 217 (227)
Q Consensus 201 ~~i~G~gG~GKTtla~~ 217 (227)
+-+++..|.|||..+-.
T Consensus 54 ~li~~~TGsGKT~~~~~ 70 (220)
T 1t6n_A 54 VLCQAKSGMGKTAVFVL 70 (220)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCchhhhhhH
Confidence 55678889999986654
No 387
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=26.47 E-value=31 Score=27.96 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=17.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDKIS 223 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~~~ 223 (227)
.+.+-|.|. ||+||.+.+..+..
T Consensus 105 ~r~ivl~GP---gK~tl~~~L~~~~~ 127 (295)
T 1kjw_A 105 ARPIIILGP---TKDRANDDLLSEFP 127 (295)
T ss_dssp CCCEEEEST---THHHHHHHHHHHCT
T ss_pred CCEEEEECC---CHHHHHHHHHhhCc
Confidence 456778887 69999999887643
No 388
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=26.30 E-value=1e+02 Score=27.91 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=39.5
Q ss_pred CcccEEEccccccCCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHH-HHhcccEEEEeec
Q 045657 15 NKYDVFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYA-IENSAISLIIFSE 79 (227)
Q Consensus 15 ~~~dvFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~-i~~s~~~i~v~S~ 79 (227)
..++|+|---+ |.....+..|...|+..|+.|-+|.. +..+...+.+| ..+.... +|+.+
T Consensus 538 aP~qv~vipi~-~~~~~~a~~v~~~L~~~Gi~v~~D~~---~~~~g~kir~a~~~g~p~~-ivvG~ 598 (642)
T 1qf6_A 538 APVQVVIMNIT-DSQSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYM-LVCGD 598 (642)
T ss_dssp CSSCEEEEESS-HHHHHHHHHHHHHHHTTTCCEEEECC---SSCHHHHHHHHHHTTCSEE-EEECT
T ss_pred CCceEEEEEeC-HHHHHHHHHHHHHHHhCCCEEEEECC---CCCHHHHHHHHHHcCCCEE-EEECc
Confidence 45788765433 33345899999999999999999971 24555666666 4445544 44443
No 389
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=25.92 E-value=69 Score=23.89 Aligned_cols=15 Identities=27% Similarity=0.147 Sum_probs=12.0
Q ss_pred EEEEcCCCchHHHHH
Q 045657 201 LGIWGFGGIGKTTIA 215 (227)
Q Consensus 201 ~~i~G~gG~GKTtla 215 (227)
+-+++..|.|||..+
T Consensus 54 ~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 54 VLAQAQSGTGKTGTF 68 (224)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 556788999999763
No 390
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=25.82 E-value=70 Score=27.15 Aligned_cols=37 Identities=27% Similarity=0.189 Sum_probs=24.4
Q ss_pred cchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 045657 180 VESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
+.-+.+.+..++... -+-|++.-|.|||..+-.....
T Consensus 95 ~~~Q~~ai~~i~~~~-----~~ll~~~TGsGKT~~~l~~i~~ 131 (472)
T 2fwr_A 95 RDYQEKALERWLVDK-----RGCIVLPTGSGKTHVAMAAINE 131 (472)
T ss_dssp CHHHHHHHHHHTTTT-----EEEEECCTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcC-----CEEEEeCCCCCHHHHHHHHHHH
Confidence 455566666665432 1556789999999988765443
No 391
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=25.44 E-value=51 Score=29.03 Aligned_cols=100 Identities=8% Similarity=0.072 Sum_probs=58.4
Q ss_pred cccEEEccccccCC--ccHHHHHHHHHhhCCCeeEEeC---CCCCCCcchHHHHHHHHhcccEEEEeecCcccch-----
Q 045657 16 KYDVFLSFRGEDTR--DNFTSHLYSALSLKSIQTFIDD---QLNRGDEISQSLVYAIENSAISLIIFSEGYASSR----- 85 (227)
Q Consensus 16 ~~dvFISy~~~D~~--~~~~~~L~~~L~~~g~~~~~d~---~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~----- 85 (227)
++=|+|-+-|-|+. .+-+..|...|.-+|++|..=. +-+.+..+.....+.+..... |+||-..+-+..
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~~~yl~R~~~~lP~~G~-IvIfdRSwYs~~~v~rv 119 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELERPPQWRFWRRLPPKGR-TGIFFGNWYSQMLYARV 119 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHTSCTTHHHHHHCCCTTC-EEEEESCHHHHHHHHHH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhccCChhhhHHHhCCCCCe-EEEEeCchhhHHHHHHH
Confidence 45589999888873 4578899999999999875422 333444454555666665443 445544432221
Q ss_pred --hhHH-HHHHHHHHh-------hhccceeeeEEeecCCCc
Q 045657 86 --WCLD-ELVKILQCK-------REYAQIVIPVFYRVDPSD 116 (227)
Q Consensus 86 --wc~~-El~~~~~~~-------~~~~~~iipif~~v~~~~ 116 (227)
.|.+ |+...+... -..+-.++=+|+++++..
T Consensus 120 ~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~ee 160 (500)
T 3czp_A 120 EGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQ 160 (500)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHH
Confidence 3433 222222222 334557777888887654
No 392
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=25.36 E-value=1.1e+02 Score=27.74 Aligned_cols=59 Identities=14% Similarity=0.250 Sum_probs=39.2
Q ss_pred CcccEEEccccccCCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHH-HHhcccEEEE
Q 045657 15 NKYDVFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYA-IENSAISLII 76 (227)
Q Consensus 15 ~~~dvFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~-i~~s~~~i~v 76 (227)
..++|+|---+.|.....|..|.+.|+.+|+.|.+|.. +..+...+.+| ..+....|+|
T Consensus 544 ap~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~---~~~~g~k~~~a~~~g~p~~iiv 603 (645)
T 1nyr_A 544 APKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDR---NEKMGYKIREAQMQKIPYQIVV 603 (645)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCS---SCCHHHHHHHHHHHTCSEEEEE
T ss_pred CCceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEE
Confidence 34688765433133345889999999999999999861 34565666666 4555555544
No 393
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=25.20 E-value=37 Score=24.99 Aligned_cols=16 Identities=31% Similarity=0.040 Sum_probs=12.6
Q ss_pred EEEEcCCCchHHHHHH
Q 045657 201 LGIWGFGGIGKTTIAR 216 (227)
Q Consensus 201 ~~i~G~gG~GKTtla~ 216 (227)
+-+++..|.|||..+-
T Consensus 41 ~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 41 LIGQARTGTGKTLAFA 56 (207)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCChHHHHHH
Confidence 5567889999998744
No 394
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=25.09 E-value=1.5e+02 Score=25.74 Aligned_cols=60 Identities=10% Similarity=0.055 Sum_probs=39.6
Q ss_pred CcccEEEccccc-c---CCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHH-HHhcccEEEE
Q 045657 15 NKYDVFLSFRGE-D---TRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYA-IENSAISLII 76 (227)
Q Consensus 15 ~~~dvFISy~~~-D---~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~-i~~s~~~i~v 76 (227)
..++|+|---+. | .....+..|...|+..|+.|-+|+ ..+..+...+..+ .......|+|
T Consensus 286 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~--~~~~s~g~k~~~a~~~G~p~~iii 350 (477)
T 1hc7_A 286 APIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDD--RDQHTPGYKFHEWELKGVPFRVEL 350 (477)
T ss_dssp CSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECC--CSSSCHHHHHHHHHHTTCSEEEEE
T ss_pred CCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeC--CCCCCHHHHHHHHhhcCCCEEEEE
Confidence 457888765443 2 234578999999999999999986 1134555566666 4455555544
No 395
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=25.03 E-value=1.7e+02 Score=23.49 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=36.9
Q ss_pred CCCeeEEeCCCCCCCcchHHHHHHHH------hcccEEEEeecCcccchhhHHHHHHHHHHhhhccceeeeEEee
Q 045657 43 KSIQTFIDDQLNRGDEISQSLVYAIE------NSAISLIIFSEGYASSRWCLDELVKILQCKREYAQIVIPVFYR 111 (227)
Q Consensus 43 ~g~~~~~d~~~~~g~~~~~~i~~~i~------~s~~~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iipif~~ 111 (227)
.+...|++..-..-..+..+|..... ..+..|+|-|-||..+ .++..++...-.-.-.++-+|+.
T Consensus 67 ~~ad~FI~a~~ksl~~i~~eI~s~~p~~~~~~~~k~LVIIDSLN~l~~----~~L~~FlsSi~sP~~sLv~vYH~ 137 (270)
T 4a8j_B 67 SYCTQFIDATQMDFVHLVKQIISYLPAATATQAKKHMVIIDSLNYIST----EYITRFLSEIASPHCTMVATYHK 137 (270)
T ss_dssp TTCSEEEETTSSCHHHHHHHHHHTCC-----CCCCEEEEESCGGGSCG----GGHHHHHHHHCCTTEEEEEEEET
T ss_pred CCCCeeeEcCCCCHHHHHHHHHHhCCCccCCCCcceEEEEecCcchhh----hhHHHHHHHhhcCCcEEEEEecC
Confidence 34556766511122333333333332 2367899999999986 56777776663334456666654
No 396
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=24.36 E-value=1.2e+02 Score=23.86 Aligned_cols=70 Identities=21% Similarity=0.197 Sum_probs=38.2
Q ss_pred HHHHHhhCCCeeEEeCCCCCCCcchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHhhhccceee
Q 045657 36 LYSALSLKSIQTFIDDQLNRGDEISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCKREYAQIVI 106 (227)
Q Consensus 36 L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~~~~~~~ii 106 (227)
|...+-..|.--++|-++..++.+...+.+..+...+-|| .|-+.++..|-.+|+...+......+-.|+
T Consensus 104 ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~kiI-~S~Hdf~~TP~~~el~~~~~~~~~~gaDIv 173 (258)
T 4h3d_A 104 LNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVI-ISNHDFNKTPKKEEIVSRLCRMQELGADLP 173 (258)
T ss_dssp HHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEE-EEEEESSCCCCHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEEE-EEEecCCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 3344444444334554555555555555555555554444 455545556666788887777755553333
No 397
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=24.32 E-value=18 Score=24.08 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=16.7
Q ss_pred CCcccEEEccccc---------cCCccHHHHHHHHHhhCC
Q 045657 14 INKYDVFLSFRGE---------DTRDNFTSHLYSALSLKS 44 (227)
Q Consensus 14 ~~~~dvFISy~~~---------D~~~~~~~~L~~~L~~~g 44 (227)
+..-|++|+|+.. +....|+..|.+.|++.+
T Consensus 8 P~~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 8 PVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp CTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHHhC
Confidence 3445677666643 322236666666666543
No 398
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=24.26 E-value=57 Score=30.04 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..|-|-|..|.|||+-++.+-+-
T Consensus 95 QsIiisGESGAGKTe~tK~i~~y 117 (697)
T 1lkx_A 95 QCVIISGESGAGKTEASKKIMQF 117 (697)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEecCCCCCCchhhHHHHHHH
Confidence 45667899999999999987654
No 399
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=24.12 E-value=16 Score=24.32 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=16.9
Q ss_pred CCCcccEEEcccccc---------CCccHHHHHHHHHhhC
Q 045657 13 NINKYDVFLSFRGED---------TRDNFTSHLYSALSLK 43 (227)
Q Consensus 13 ~~~~~dvFISy~~~D---------~~~~~~~~L~~~L~~~ 43 (227)
.+..-|++|+|+..+ ....|+..|.+.|++.
T Consensus 9 iP~~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~ 48 (95)
T 1qtn_B 9 IPDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRER 48 (95)
T ss_dssp CCTTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHh
Confidence 334567777776443 2222566666666553
No 400
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=23.87 E-value=2e+02 Score=20.45 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHHHHhcccEEEEeecCcccc
Q 045657 30 DNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYAIENSAISLIIFSEGYASS 84 (227)
Q Consensus 30 ~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~S 84 (227)
...|+.+.+.|+..|+.+-+-+ +..-.. ...+...+.+++ .|++-||.|...
T Consensus 19 ~~iA~~ia~~l~~~g~~v~~~~-~~~~~~-~~~~~~~~~~~d-~ii~Gspty~g~ 70 (159)
T 3fni_A 19 DRLAQAIINGITKTGVGVDVVD-LGAAVD-LQELRELVGRCT-GLVIGMSPAASA 70 (159)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE-SSSCCC-HHHHHHHHHTEE-EEEEECCBTTSH
T ss_pred HHHHHHHHHHHHHCCCeEEEEE-CcCcCC-HHHHHHHHHhCC-EEEEEcCcCCCC
Confidence 4589999999999998764422 221101 244555667776 566678888743
No 401
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=23.79 E-value=64 Score=25.87 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=13.9
Q ss_pred EEEEEcCCCchHHHHHHH
Q 045657 200 TLGIWGFGGIGKTTIARA 217 (227)
Q Consensus 200 ~~~i~G~gG~GKTtla~~ 217 (227)
.+-+.+..|.|||..+-.
T Consensus 46 ~~l~~~~TGsGKT~~~~~ 63 (367)
T 1hv8_A 46 NIVAQARTGSGKTASFAI 63 (367)
T ss_dssp EEEEECCSSSSHHHHHHH
T ss_pred CEEEECCCCChHHHHHHH
Confidence 345678999999988654
No 402
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=23.75 E-value=2.5e+02 Score=21.80 Aligned_cols=65 Identities=11% Similarity=-0.083 Sum_probs=39.5
Q ss_pred cHHHHHHHHHhhCCCeeEEeC--CCCC--CC----cchHHHHHHHHhcccEEEEeecCcccchhhHHHHHHHHHHh
Q 045657 31 NFTSHLYSALSLKSIQTFIDD--QLNR--GD----EISQSLVYAIENSAISLIIFSEGYASSRWCLDELVKILQCK 98 (227)
Q Consensus 31 ~~~~~L~~~L~~~g~~~~~d~--~~~~--g~----~~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~El~~~~~~~ 98 (227)
..++++.+.|+..|+.+-+-+ ++.. .+ .-...+.+.|.+++ .||+.||-|..+-- .-|..++++.
T Consensus 52 ~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD-~iI~~sP~Yn~sip--a~LKn~iD~l 124 (247)
T 2q62_A 52 LLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSE-GQVWVSPERHGAMT--GIMKAQIDWI 124 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCS-EEEEEEECSSSSCC--HHHHHHHHTS
T ss_pred HHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCC-EEEEEeCCCCCCcc--HHHHHHHHHh
Confidence 477888888888888764432 3321 11 11356778899998 46667899976632 2344444443
No 403
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=23.22 E-value=2.4e+02 Score=21.21 Aligned_cols=54 Identities=11% Similarity=0.012 Sum_probs=32.1
Q ss_pred cccEEEcccccc-CCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHHHHhccc
Q 045657 16 KYDVFLSFRGED-TRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYAIENSAI 72 (227)
Q Consensus 16 ~~dvFISy~~~D-~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~ 72 (227)
..=+||-|...+ ....++..+.++|++.|+.+-.-+ +.. .-.+.+.+.|.+++.
T Consensus 28 ~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~-i~~--~~~~~~~~~l~~ad~ 82 (206)
T 3l4e_A 28 KTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELD-IAT--ESLGEITTKLRKNDF 82 (206)
T ss_dssp CEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECC-TTT--SCHHHHHHHHHHSSE
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEE-ecC--CChHHHHHHHHhCCE
Confidence 344588887652 122367778888888888754322 222 123455667888774
No 404
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=23.12 E-value=47 Score=30.41 Aligned_cols=20 Identities=25% Similarity=-0.094 Sum_probs=16.2
Q ss_pred CeEEEEEEcCCCchHHHHHH
Q 045657 197 YVYTLGIWGFGGIGKTTIAR 216 (227)
Q Consensus 197 ~~~~~~i~G~gG~GKTtla~ 216 (227)
+.+.+-++|..|.|||+.|-
T Consensus 154 ~rk~vlv~apTGSGKT~~al 173 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAI 173 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 35678889999999999554
No 405
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=22.92 E-value=44 Score=26.31 Aligned_cols=35 Identities=9% Similarity=-0.161 Sum_probs=21.7
Q ss_pred chhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 045657 181 ESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
.-+.+.+..++... .. -+++..|.|||..+-....
T Consensus 116 ~~Q~~ai~~~l~~~---~~--ll~~~tGsGKT~~~~~~~~ 150 (282)
T 1rif_A 116 WYQKDAVFEGLVNR---RR--ILNLPTSAGRSLIQALLAR 150 (282)
T ss_dssp HHHHHHHHHHHHHS---EE--EECCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---Ce--EEEcCCCCCcHHHHHHHHH
Confidence 33555555555431 11 3478889999999876544
No 406
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=22.54 E-value=64 Score=30.09 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=18.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..|-|-|..|.|||+-++.+-+-
T Consensus 173 QsIiisGESGAGKTe~tK~i~~y 195 (770)
T 1w9i_A 173 QSLLITGESGAGKTENTKKVIQY 195 (770)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEecCCCCcchHHHHHHHHH
Confidence 45667899999999999987654
No 407
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=22.08 E-value=1.4e+02 Score=25.78 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=39.2
Q ss_pred CCcccEEEc-ccc-ccCCccHHHHHHHHHhhCCCeeE--EeCCCCCCCcchHHHHHH-HHhcccEEEE
Q 045657 14 INKYDVFLS-FRG-EDTRDNFTSHLYSALSLKSIQTF--IDDQLNRGDEISQSLVYA-IENSAISLII 76 (227)
Q Consensus 14 ~~~~dvFIS-y~~-~D~~~~~~~~L~~~L~~~g~~~~--~d~~~~~g~~~~~~i~~~-i~~s~~~i~v 76 (227)
...++|+|- .-+ .+.....|..|...|+++|+.|. +|+ ..+..+...+.++ .......|+|
T Consensus 336 lAP~qV~Ii~~~~~~e~~~~~A~~l~~~Lr~~Gi~v~~~~Dd--r~~~sigkk~r~Ad~~GiP~~IiV 401 (454)
T 1g5h_A 336 LAPIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSE--TVHSSLEQLHSKYDEMSVLFSVLV 401 (454)
T ss_dssp TCSCCEEEEECSSCHHHHHHHHHHHHHHHHHTTCCEEEGGGS--CCCSCHHHHHHHHHHTTCSEEEEE
T ss_pred cCCCeEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEecC--CCCCCHHHHHHHHHHcCCCEEEEE
Confidence 345888877 333 13334588999999999999995 554 1134566666666 4455555554
No 408
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=22.06 E-value=75 Score=21.95 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=21.2
Q ss_pred chHHHHHHHHhcccEEEEeecCcccchhhHH
Q 045657 59 ISQSLVYAIENSAISLIIFSEGYASSRWCLD 89 (227)
Q Consensus 59 ~~~~i~~~i~~s~~~i~v~S~~~~~S~wc~~ 89 (227)
-.+.|.+.|.+.+ |+|||+.-...++|..
T Consensus 9 ~~e~i~~~i~~~~--VvvF~Kgt~~~P~C~f 37 (118)
T 2wul_A 9 SAEQLDALVKKDK--VVVFLKGTPEQPQCGF 37 (118)
T ss_dssp CHHHHHHHHHHSS--EEEEESBCSSSBSSHH
T ss_pred hHHHHHHHHhcCC--EEEEEcCCCCCCCCHH
Confidence 3467888899888 7888887666566654
No 409
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=22.04 E-value=2e+02 Score=19.86 Aligned_cols=64 Identities=9% Similarity=0.036 Sum_probs=36.7
Q ss_pred CcccEEEccccccCCccHHHHHHHHHhhCCCeeEEeCCCCCCCcchHHHHHHHH--hcccEEEEeec
Q 045657 15 NKYDVFLSFRGEDTRDNFTSHLYSALSLKSIQTFIDDQLNRGDEISQSLVYAIE--NSAISLIIFSE 79 (227)
Q Consensus 15 ~~~dvFISy~~~D~~~~~~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~--~s~~~i~v~S~ 79 (227)
.++-++|.|............+...+|++|+.+-+.. ....++....-.+|-+ .+.+.|-+-+.
T Consensus 4 ~~PaI~i~~~~~~~~~~~l~~vl~GIEEEGip~~v~~-~~~~~d~~~lA~~AA~~S~lgVGIGi~~~ 69 (117)
T 1nbw_B 4 SPPGVRLFYDPRGHHAGAINELCWGLEEQGVPCQTIT-YDGGGDAAALGALAARSSPLRVGIGLSAS 69 (117)
T ss_dssp -CCCEEEEECTTSCCHHHHHHHHHHHHHTTCCEEEEE-CTTCCCHHHHHHHHHHHCTTSEEEEECTT
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHhhhhhcCCCeEEEE-eCCCCCHHHHHHHHHHhCCCceEEEECCC
Confidence 4556888884333334478899999999999866533 1111333343444444 44455555443
No 410
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=21.74 E-value=36 Score=28.19 Aligned_cols=19 Identities=37% Similarity=0.520 Sum_probs=14.9
Q ss_pred eEEEEEEcCCCchHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIAR 216 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~ 216 (227)
-..+||+|+|.||+..-.+
T Consensus 141 g~tvGIiG~G~IG~~va~~ 159 (334)
T 3kb6_A 141 RLTLGVIGTGRIGSRVAMY 159 (334)
T ss_dssp GSEEEEECCSHHHHHHHHH
T ss_pred CcEEEEECcchHHHHHHHh
Confidence 3479999999999976433
No 411
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=21.55 E-value=41 Score=27.02 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=16.8
Q ss_pred ccCcccccchhHHHHHHHhhc
Q 045657 173 YKNQLVGVESRVKEIESLLGA 193 (227)
Q Consensus 173 ~~~~~~g~~~~~~~~~~~l~~ 193 (227)
.+..++||+.+++.|.+ +..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~ 30 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA 30 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS
T ss_pred CHHHhcChHHHHHHHHH-hcC
Confidence 45789999999999999 753
No 412
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=21.40 E-value=23 Score=23.96 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=17.6
Q ss_pred CCCcccEEEcccccc---------CCccHHHHHHHHHhhCC
Q 045657 13 NINKYDVFLSFRGED---------TRDNFTSHLYSALSLKS 44 (227)
Q Consensus 13 ~~~~~dvFISy~~~D---------~~~~~~~~L~~~L~~~g 44 (227)
.+..-|++|+|+..+ ....|+..|.+.|++.+
T Consensus 13 iP~~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 13 IPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp CCTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 344567888776443 22226666666665543
No 413
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=21.23 E-value=23 Score=24.03 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=16.3
Q ss_pred CcccEEEccccc---------cCCccHHHHHHHHHhhCC
Q 045657 15 NKYDVFLSFRGE---------DTRDNFTSHLYSALSLKS 44 (227)
Q Consensus 15 ~~~dvFISy~~~---------D~~~~~~~~L~~~L~~~g 44 (227)
..-|++|+|+.. +....|+..|.+.|++.+
T Consensus 13 ~~aDfL~~yST~pG~~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 13 TRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp SSCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCcEEEecCCCCCHHHHHHHHHHHHHC
Confidence 355677766543 322236666666666533
No 414
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=20.94 E-value=1.6e+02 Score=19.94 Aligned_cols=44 Identities=14% Similarity=0.230 Sum_probs=32.9
Q ss_pred HHHHhhCCCeeEEeCCCCCCCcchHHHHHHHHhcccEEEEeecCccc
Q 045657 37 YSALSLKSIQTFIDDQLNRGDEISQSLVYAIENSAISLIIFSEGYAS 83 (227)
Q Consensus 37 ~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~ 83 (227)
.-.+...|+.+|... ..+.+.+.+.+.+++.++.|++++.+.+.
T Consensus 15 v~GFrLaGi~~~~v~---~~ee~~~~~~~l~~~~digIIlIte~~a~ 58 (109)
T 2d00_A 15 AQGFRLAGLEGYGAS---SAEEAQSLLETLVERGGYALVAVDEALLP 58 (109)
T ss_dssp HHHHHHTTSEEEECS---SHHHHHHHHHHHHHHCCCSEEEEETTTCS
T ss_pred HHHHHHcCCeEEEeC---CHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 356778999988532 23456566777777889999999999876
No 415
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=20.89 E-value=1.2e+02 Score=23.88 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=13.2
Q ss_pred EEEEcCCCchHHHHHHH
Q 045657 201 LGIWGFGGIGKTTIARA 217 (227)
Q Consensus 201 ~~i~G~gG~GKTtla~~ 217 (227)
+-+.+..|.|||..+-.
T Consensus 34 ~lv~~~TGsGKT~~~~~ 50 (337)
T 2z0m_A 34 VVVRAKTGSGKTAAYAI 50 (337)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHH
Confidence 55678899999986654
No 416
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=20.69 E-value=83 Score=29.40 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=19.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..|-|-|..|.|||+-++.+-+-
T Consensus 141 QsIiiSGESGAGKTe~tK~i~~y 163 (784)
T 2v26_A 141 QSIIVSGESGAGKTENTKFVLRY 163 (784)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEcCCCCCCceehHHHHHHH
Confidence 45667899999999999987654
No 417
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=20.67 E-value=75 Score=24.14 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=12.2
Q ss_pred EEEEcCCCchHHHHHH
Q 045657 201 LGIWGFGGIGKTTIAR 216 (227)
Q Consensus 201 ~~i~G~gG~GKTtla~ 216 (227)
+-+++..|.|||..+-
T Consensus 70 ~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 70 VIAQAQSGTGKTATFA 85 (237)
T ss_dssp EEECCCSSHHHHHHHH
T ss_pred EEEECCCCCcHHHHHH
Confidence 4567889999997643
No 418
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=20.22 E-value=76 Score=29.65 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=19.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 045657 198 VYTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 198 ~~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
-..|-|-|..|.|||+-++.+-+-
T Consensus 171 nQsIiiSGESGAGKTe~tK~im~y 194 (783)
T 4db1_A 171 NQSILITGESGAGKTVNTKRVIQY 194 (783)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEeCCCCCCCchHHHHHHHh
Confidence 345667899999999999987654
No 419
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=20.16 E-value=1e+02 Score=26.42 Aligned_cols=36 Identities=8% Similarity=-0.182 Sum_probs=23.6
Q ss_pred cchhHHHHHHHhhcCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 045657 180 VESRVKEIESLLGAESKYVYTLGIWGFGGIGKTTIARAIFD 220 (227)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~i~G~gG~GKTtla~~v~~ 220 (227)
+.-+.+.+..++.. +-+-++|.-|.|||..+-....
T Consensus 115 ~~~Q~~ai~~~~~~-----~~~ll~~~tGsGKT~~~~~~~~ 150 (510)
T 2oca_A 115 HWYQKDAVFEGLVN-----RRRILNLPTSAGRSLIQALLAR 150 (510)
T ss_dssp CHHHHHHHHHHHHH-----SEEEEECCSTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHH
Confidence 34455666665542 2345779999999999865443
No 420
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=20.14 E-value=83 Score=30.52 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=19.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIARAIFDK 221 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~~v~~~ 221 (227)
..|-|-|..|.|||+-++.+-+-
T Consensus 145 QsIiiSGESGAGKTestK~im~y 167 (1052)
T 4anj_A 145 QSIIVSGESGAGKTENTKFVLRY 167 (1052)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCCHHHHHHHHHHH
Confidence 45677899999999999988664
No 421
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=20.03 E-value=46 Score=27.42 Aligned_cols=18 Identities=39% Similarity=0.648 Sum_probs=14.6
Q ss_pred EEEEEEcCCCchHHHHHH
Q 045657 199 YTLGIWGFGGIGKTTIAR 216 (227)
Q Consensus 199 ~~~~i~G~gG~GKTtla~ 216 (227)
..+||+|+|.+|+....+
T Consensus 146 ~~vgIiG~G~IG~~~A~~ 163 (333)
T 1dxy_A 146 QTVGVMGTGHIGQVAIKL 163 (333)
T ss_dssp SEEEEECCSHHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHH
Confidence 469999999999976443
Done!