Query 045658
Match_columns 188
No_of_seqs 114 out of 551
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:11:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03018 Dirigent: Dirigent-li 100.0 9.9E-53 2.2E-57 333.5 19.5 144 37-187 1-144 (144)
2 PF06351 Allene_ox_cyc: Allene 97.7 0.00078 1.7E-08 54.5 11.9 120 34-170 3-127 (176)
3 PLN02343 allene oxide cyclase 97.1 0.015 3.3E-07 48.9 12.5 121 34-170 53-178 (229)
4 PF11528 DUF3224: Protein of u 79.1 27 0.00058 27.5 9.3 90 92-187 40-133 (134)
5 PF07172 GRP: Glycine rich pro 70.1 1.6 3.5E-05 32.5 0.3 20 1-20 1-20 (95)
6 PF02402 Lysis_col: Lysis prot 65.7 5.6 0.00012 25.8 2.0 26 1-27 1-26 (46)
7 PF13956 Ibs_toxin: Toxin Ibs, 23.0 53 0.0011 17.4 1.1 13 9-21 4-16 (19)
8 PF00918 Gastrin: Gastrin/chol 21.4 49 0.0011 25.4 1.1 14 7-20 4-17 (116)
9 PF08239 SH3_3: Bacterial SH3 19.4 96 0.0021 19.4 2.0 17 83-99 4-20 (55)
10 PF06347 SH3_4: Bacterial SH3 19.3 89 0.0019 19.9 1.8 17 83-99 6-22 (55)
No 1
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=100.00 E-value=9.9e-53 Score=333.50 Aligned_cols=144 Identities=50% Similarity=0.893 Sum_probs=134.8
Q ss_pred ceeEEEEEEeeecCCCCcceEEEeeccccCCCCCCCCCeeEEEEeeeeeeCCCCCCcceeeeeEEEEEecCCCCceeEEE
Q 045658 37 KVTKLHFFLHDILSGQNPSAVMVARANLTDGDKSPTPFGSVFAVDDALRVGPESNSEIIGNAQGLYVSSSQDANNFAIVM 116 (188)
Q Consensus 37 ~~t~l~fY~Hd~~~g~n~t~~~v~~~~~~~~~~~~~~FG~~~v~Dd~lt~gp~~~Sk~VGRaqG~~~~~~~~~~~~~~~~ 116 (188)
|++||+|||||+++|||+|+++|+.++ .+ ...+||+++|+|||||+||+++||+||||||+|+.++++ + .+|++
T Consensus 1 ~~t~l~fY~H~~~~g~n~t~~~v~~~~--~~--~~~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~-~-~~~~~ 74 (144)
T PF03018_consen 1 KETHLHFYMHDIVSGPNPTAVVVAEPP--GP--SSSGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLD-G-SSWFM 74 (144)
T ss_pred CceEEEEEeeecCCCCCCCEEEeccCC--CC--CCCCCcEEEEEeeceEcCCCCCCccceEEEEEEEeeccc-C-ccEEE
Confidence 689999999999999999999999886 32 223899999999999999999999999999999999999 6 89999
Q ss_pred EEEEEEccCcccCceEEEecCCCCCCCcceeEEeccccceeceEEEEEEEEEEecCCCCceEEEEEEEEEe
Q 045658 117 YIDFALTSGEFKGSSFSVFSRNPVSEPSRELAVVGGRGKFRMARGFAVLKTAYFNGTNGDAIIDYNVSLFH 187 (188)
Q Consensus 117 ~~~~vF~~g~~~GSTL~v~G~~~~~~~~~E~aVVGGTG~Fr~ArGya~~~t~~~~~~~~~~i~e~~V~v~h 187 (188)
+++++|++++||||||+++|+++..+++||||||||||+|||||||++++++ .+...+++|+||||||+|
T Consensus 75 ~~~~vF~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~-~~~~~~~~v~e~~v~~~h 144 (144)
T PF03018_consen 75 SFTLVFEDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTV-FDSSGGNAVLELNVHLFH 144 (144)
T ss_pred EEEEEEEecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEE-eecCCCCEEEEEEEEEEC
Confidence 9999999999999999999999988999999999999999999999999999 345667899999999998
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=97.74 E-value=0.00078 Score=54.51 Aligned_cols=120 Identities=23% Similarity=0.322 Sum_probs=75.3
Q ss_pred CCCceeEEEEE-EeeecCCCCcceEEEeeccccCCCCCCCCCeeEEEEeeeeeeCCCCCCcceeeeeEEEEEec----CC
Q 045658 34 MQQKVTKLHFF-LHDILSGQNPSAVMVARANLTDGDKSPTPFGSVFAVDDALRVGPESNSEIIGNAQGLYVSSS----QD 108 (188)
Q Consensus 34 ~~~~~t~l~fY-~Hd~~~g~n~t~~~v~~~~~~~~~~~~~~FG~~~v~Dd~lt~gp~~~Sk~VGRaqG~~~~~~----~~ 108 (188)
++.|...|++| +.|.-.|. |.-.++.. ......|..+-|.|+|.+|.- -+-+|--+|+-+.-. ..
T Consensus 3 ~p~kvqel~vyeiNErdR~S-Pa~L~ls~-------k~~nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k~ 72 (176)
T PF06351_consen 3 RPTKVQELSVYEINERDRGS-PAYLRLSQ-------KSVNSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEKK 72 (176)
T ss_dssp -----EEEEEEEE--S-S---S--B--SS-------SSSS-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCCT
T ss_pred CccceEEEEEEEEcccccCC-CcEEEccc-------ccchhcccccccccccccchh--hhhhcccceEEEEEEeccccC
Confidence 34566778888 55554432 32233311 233568999999999999976 789999999977633 22
Q ss_pred CCceeEEEEEEEEEccCcccCceEEEecCCCCCCCcceeEEeccccceeceEEEEEEEEEEe
Q 045658 109 ANNFAIVMYIDFALTSGEFKGSSFSVFSRNPVSEPSRELAVVGGRGKFRMARGFAVLKTAYF 170 (188)
Q Consensus 109 ~~~~~~~~~~~~vF~~g~~~GSTL~v~G~~~~~~~~~E~aVVGGTG~Fr~ArGya~~~t~~~ 170 (188)
+ ..+=-.+++.|-+ | | .|+++|..... +..-++|.||||-|+.|+|-+++..+-+
T Consensus 73 -G-dryEaiySfyfGd--y-G-hISvqGpy~t~-eDtyLAVTGGtGiF~g~~GqVkL~qivf 127 (176)
T PF06351_consen 73 -G-DRYEAIYSFYFGD--Y-G-HISVQGPYLTY-EDTYLAVTGGTGIFEGVYGQVKLHQIVF 127 (176)
T ss_dssp -E-EEEEEEEEEE-GG--G-E-EEEEEEEEETT-S-EEEEEEEEEETTTT-EEEEEEEEEET
T ss_pred -C-ceEEEEEEEEecc--c-c-eEEEecccccc-cceeEEEeccCceeecceEEEEEEEeec
Confidence 2 4455667788854 2 4 89999998654 4668999999999999999999988754
No 3
>PLN02343 allene oxide cyclase
Probab=97.11 E-value=0.015 Score=48.88 Aligned_cols=121 Identities=21% Similarity=0.322 Sum_probs=84.0
Q ss_pred CCCceeEEEEE-EeeecCCCCcceEEEeeccccCCCCCCCCCeeEEEEeeeeeeCCCCCCcceeeeeEEEEEecC----C
Q 045658 34 MQQKVTKLHFF-LHDILSGQNPSAVMVARANLTDGDKSPTPFGSVFAVDDALRVGPESNSEIIGNAQGLYVSSSQ----D 108 (188)
Q Consensus 34 ~~~~~t~l~fY-~Hd~~~g~n~t~~~v~~~~~~~~~~~~~~FG~~~v~Dd~lt~gp~~~Sk~VGRaqG~~~~~~~----~ 108 (188)
++.|...|++| +.|.-.+. |.-.+...- ......|+++-|.+.|++|. --|.+|--.|+-+.-.. .
T Consensus 53 ~p~kvQel~VYEiNErDR~S-Pa~L~ls~k------~~~~sLGDlVPFsNKlY~g~--L~kRlGiTaG~Cvliq~~pek~ 123 (229)
T PLN02343 53 RPTKVQELSVYEINERDRGS-PAFLKLSKK------SVENALGDLVPFTNKLYTGD--LKKRLGITAGLCVLIQHVPEKK 123 (229)
T ss_pred CCceeEEEEEEEeccccCCC-cceEEcccC------cccccccceeccccccccch--hhhhhcccceeEEEEEeccccC
Confidence 34556666677 44433322 222232211 12256899999999999886 35789999998765432 2
Q ss_pred CCceeEEEEEEEEEccCcccCceEEEecCCCCCCCcceeEEeccccceeceEEEEEEEEEEe
Q 045658 109 ANNFAIVMYIDFALTSGEFKGSSFSVFSRNPVSEPSRELAVVGGRGKFRMARGFAVLKTAYF 170 (188)
Q Consensus 109 ~~~~~~~~~~~~vF~~g~~~GSTL~v~G~~~~~~~~~E~aVVGGTG~Fr~ArGya~~~t~~~ 170 (188)
+ ..+=..+++.|-| | | .|+++|....- +..-++|.||+|.|..|+|-+++..+.+
T Consensus 124 -g-DryEa~ySfyfGD--y-G-HisvqGpylty-eDt~LaiTGGsGiFega~GqvkL~qivf 178 (229)
T PLN02343 124 -G-DRYEAIYSFYFGD--Y-G-HISVQGPYLTY-EDTYLAITGGSGIFEGAYGQVKLHQIVF 178 (229)
T ss_pred -C-ceeEEEEEEEecC--c-c-eeEEecccccc-ccceEEeecCcceeecceeEEEEeeeee
Confidence 2 4577788888854 3 4 79999998754 4568999999999999999999887654
No 4
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=79.11 E-value=27 Score=27.47 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=52.2
Q ss_pred CcceeeeeEEEEEecCCCCceeEEEEEEEEE-ccCcccCc-eEEEecCCCCCCCcceeEEe--ccccceeceEEEEEEEE
Q 045658 92 SEIIGNAQGLYVSSSQDANNFAIVMYIDFAL-TSGEFKGS-SFSVFSRNPVSEPSRELAVV--GGRGKFRMARGFAVLKT 167 (188)
Q Consensus 92 Sk~VGRaqG~~~~~~~~~~~~~~~~~~~~vF-~~g~~~GS-TL~v~G~~~~~~~~~E~aVV--GGTG~Fr~ArGya~~~t 167 (188)
-.+.|++++-++.+-...+ .+.++.+..+= +-..-+|| .|+-.|.........+|-|| -|||++...+|-..++.
T Consensus 40 G~l~Gts~~~~L~~y~~~g-~a~yva~E~~~Gtl~Gr~GsFvl~h~G~~~~g~~~~~~~VVPgSGTGeL~Gl~Gsg~~~~ 118 (134)
T PF11528_consen 40 GDLEGTSTGEYLMAYDPDG-SAGYVAFERFTGTLDGRSGSFVLQHSGTFDAGTASSSFTVVPGSGTGELAGLSGSGTITI 118 (134)
T ss_dssp TTEEEEEEEEEEEEEECTT-EEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEE-TT--EETTTTEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCC-cEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCCchhhcCCEEEEEEEE
Confidence 4477888888877654423 44455443211 11123453 23344444333346789999 99999999999998875
Q ss_pred EEecCCCCceEEEEEEEEEe
Q 045658 168 AYFNGTNGDAIIDYNVSLFH 187 (188)
Q Consensus 168 ~~~~~~~~~~i~e~~V~v~h 187 (188)
.. +...++|+..+-+
T Consensus 119 ~~-----g~h~y~f~y~l~d 133 (134)
T PF11528_consen 119 DE-----GQHAYDFEYTLPD 133 (134)
T ss_dssp ET-----TCEEEEEEEEEEE
T ss_pred CC-----CCceeeEEEECCC
Confidence 32 3457788877643
No 5
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=70.11 E-value=1.6 Score=32.46 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=13.7
Q ss_pred CCceeehhhHHHHHHhhhhc
Q 045658 1 MQNRVIFCLAVILCVAAAPA 20 (188)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~ 20 (188)
|.+|.++.++++|+++++++
T Consensus 1 MaSK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLIS 20 (95)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 88888777777765555544
No 6
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=65.75 E-value=5.6 Score=25.80 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=18.9
Q ss_pred CCceeehhhHHHHHHhhhhccccceee
Q 045658 1 MQNRVIFCLAVILCVAAAPAQGEYYSE 27 (188)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (188)
|| +++|+.++++.++...-+++|-++
T Consensus 1 Mk-Ki~~~~i~~~~~~L~aCQaN~iRD 26 (46)
T PF02402_consen 1 MK-KIIFIGIFLLTMLLAACQANYIRD 26 (46)
T ss_pred Cc-EEEEeHHHHHHHHHHHhhhcceec
Confidence 77 677888888776666667776665
No 7
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=22.98 E-value=53 Score=17.41 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=6.6
Q ss_pred hHHHHHHhhhhcc
Q 045658 9 LAVILCVAAAPAQ 21 (188)
Q Consensus 9 ~~~~~~~~~~~~~ 21 (188)
++++|.++.+..-
T Consensus 4 ~vIIlvvLLliSf 16 (19)
T PF13956_consen 4 LVIILVVLLLISF 16 (19)
T ss_pred ehHHHHHHHhccc
Confidence 5555555554443
No 8
>PF00918 Gastrin: Gastrin/cholecystokinin family; InterPro: IPR001651 Gastrin and cholecystokinin (CCK) are structurally and functionally related peptide hormones that function as hormonal regulators of various digestive processes and feeding behaviors. They are known to induce gastric secretion, stimulate pancreatic secretion, increase blood circulation and water secretion in the stomach and intestine, and stimulate smooth muscle contraction. Originally found in the gut, these hormones have since been shown to be present in various parts of the nervous system. Like many other active peptides they are synthesized as larger protein precursors that are enzymatically converted to their mature forms. They are found in several molecular forms due to tissue-specific post-translational processing. The biological activity of gastrin and CCK is associated with the last five C-terminal residues. One or two positions downstream, there is a conserved sulphated tyrosine residue. The amphibian caerulein skin peptide, the cockroach leukosulphakinin I and II (LSK) peptides, Drosophila melanogaster (Fruit fly) putative CCK-homologs Drosulphakinins I and II, cionin, a Gallus gallus (Chicken) gastrin/cholecystokinin-like peptide and cionin, a neuropeptide from the protochordate Ciona intestinalis belong to the same family.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=21.36 E-value=49 Score=25.38 Aligned_cols=14 Identities=29% Similarity=0.721 Sum_probs=10.7
Q ss_pred hhhHHHHHHhhhhc
Q 045658 7 FCLAVILCVAAAPA 20 (188)
Q Consensus 7 ~~~~~~~~~~~~~~ 20 (188)
+|+|++|++|++.+
T Consensus 4 icvcvLlavLs~~~ 17 (116)
T PF00918_consen 4 ICVCVLLAVLSTSC 17 (116)
T ss_pred EEeeHHHHHHHHhh
Confidence 68888888877754
No 9
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=19.42 E-value=96 Score=19.38 Aligned_cols=17 Identities=41% Similarity=0.776 Sum_probs=13.7
Q ss_pred eeeeCCCCCCcceeeee
Q 045658 83 ALRVGPESNSEIIGNAQ 99 (188)
Q Consensus 83 ~lt~gp~~~Sk~VGRaq 99 (188)
.|+.+|+.+|+.++.+.
T Consensus 4 nvR~~p~~~s~~i~~l~ 20 (55)
T PF08239_consen 4 NVRSGPSTNSPVIGQLP 20 (55)
T ss_dssp EEESSSSTTSTEEEEEE
T ss_pred EEEeCCCCCChhhEEEe
Confidence 47888999999988863
No 10
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=19.27 E-value=89 Score=19.88 Aligned_cols=17 Identities=41% Similarity=0.726 Sum_probs=14.5
Q ss_pred eeeeCCCCCCcceeeee
Q 045658 83 ALRVGPESNSEIIGNAQ 99 (188)
Q Consensus 83 ~lt~gp~~~Sk~VGRaq 99 (188)
+|+.+|+.+|+++.++.
T Consensus 6 ~lr~~P~~~~~vv~~l~ 22 (55)
T PF06347_consen 6 NLRSGPSSNSPVVARLE 22 (55)
T ss_pred EEEcCCCCCCCEEEEEC
Confidence 68899999999998873
Done!