Query 045658
Match_columns 188
No_of_seqs 114 out of 551
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 06:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.6 1.2E-06 4E-11 70.6 14.2 130 35-186 13-147 (188)
2 4h6b_A Allene oxide cyclase; B 98.6 1E-06 3.5E-11 71.2 12.5 128 33-170 12-144 (195)
3 2q03_A Uncharacterized protein 44.2 1E+02 0.0034 23.3 11.4 88 92-184 45-136 (138)
4 2ooj_A Hypothetical protein; s 22.3 2.5E+02 0.0086 21.0 12.8 88 92-185 41-133 (141)
5 3h6j_A Neuraminidase, sialidas 18.4 63 0.0022 27.4 2.5 53 112-166 373-435 (438)
6 2krs_A Probable enterotoxin; a 15.4 80 0.0027 20.5 2.0 16 83-98 12-27 (74)
7 2cvc_A Cytochrome CC3, high-mo 13.8 39 0.0013 30.7 0.0 20 1-20 1-21 (545)
8 2a3m_A COG3005: nitrate/TMAO r 11.1 54 0.0019 24.0 0.1 8 1-8 1-8 (130)
9 2kt8_A Probable surface protei 11.1 1.1E+02 0.0038 20.1 1.6 16 83-98 14-29 (76)
10 2e56_A Lymphocyte antigen 96; 11.1 3.5E+02 0.012 20.6 4.6 34 155-188 107-140 (144)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.62 E-value=1.2e-06 Score=70.62 Aligned_cols=130 Identities=22% Similarity=0.245 Sum_probs=90.9
Q ss_pred CCceeEEEEE-EeeecCCCCcceEEEeeccccCCCCCCCCCeeEEEEeeeeeeCCCCCCcceeeeeEEEEEec----CCC
Q 045658 35 QQKVTKLHFF-LHDILSGQNPSAVMVARANLTDGDKSPTPFGSVFAVDDALRVGPESNSEIIGNAQGLYVSSS----QDA 109 (188)
Q Consensus 35 ~~~~t~l~fY-~Hd~~~g~n~t~~~v~~~~~~~~~~~~~~FG~~~v~Dd~lt~gp~~~Sk~VGRaqG~~~~~~----~~~ 109 (188)
+.|...|.+| +.|.-.+. |.-.++. .......|..+.|+++|.+|.. -+.||.-+|+-+... +.
T Consensus 13 ~~~vq~l~vye~NE~dr~s-Pa~L~l~-------~k~~~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~- 81 (188)
T 2brj_A 13 PSKVQELSVYEINELDRHS-PKILKNA-------FSLMFGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKK- 81 (188)
T ss_dssp --CCEEEEEEEECCSCSCC-CCCBCCC-------SSSSSCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGT-
T ss_pred ccceEEEEEEEecccccCC-CceEEcc-------cccCcCcccEEeeccccccccc--ceeccccceEEEEEEecCCCC-
Confidence 4456677777 54443322 2222221 1234458999999999997764 589999999977764 22
Q ss_pred CceeEEEEEEEEEccCcccCceEEEecCCCCCCCcceeEEeccccceeceEEEEEEEEEEecCCCCceEEEEEEEEE
Q 045658 110 NNFAIVMYIDFALTSGEFKGSSFSVFSRNPVSEPSRELAVVGGRGKFRMARGFAVLKTAYFNGTNGDAIIDYNVSLF 186 (188)
Q Consensus 110 ~~~~~~~~~~~vF~~g~~~GSTL~v~G~~~~~~~~~E~aVVGGTG~Fr~ArGya~~~t~~~~~~~~~~i~e~~V~v~ 186 (188)
+ ..+-..+++.|-+. | .|+++|..... +...+||.||||.|+.|+|.+++.++.+ +. -++|.+||.
T Consensus 82 g-dryE~tyS~yfgd~---G-hISvQGpy~t~-~Dt~LAITGGTGif~gA~G~Vkl~~i~~-P~----k~~yTf~L~ 147 (188)
T 2brj_A 82 G-ERFEATYSFYFGDY---G-HLSVQGPYLTY-EDSFLAITGGAGIFEGAYGQVKLQQLVY-PT----KLFYTFYLK 147 (188)
T ss_dssp E-EEEEEEEEEECGGG---E-EEEEEEEEETT-BCEEEEEEEEEETTTTCEEEEEEEEEET-TT----EEEEEEEEE
T ss_pred C-cEEEEEEEEEeCCC---c-eEEEecccccc-ccceeeEecCcceEcceEEEEEEEeecc-Cc----eEEEEEEEe
Confidence 3 56777778888542 4 79999996432 4578999999999999999999999875 32 377777764
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.56 E-value=1e-06 Score=71.22 Aligned_cols=128 Identities=20% Similarity=0.251 Sum_probs=85.2
Q ss_pred CCCCceeEEEEE-EeeecCCCCcceEEEeeccccCCCCCCCCCeeEEEEeeeeeeCCCCCCcceeeeeEEEEEec----C
Q 045658 33 PMQQKVTKLHFF-LHDILSGQNPSAVMVARANLTDGDKSPTPFGSVFAVDDALRVGPESNSEIIGNAQGLYVSSS----Q 107 (188)
Q Consensus 33 ~~~~~~t~l~fY-~Hd~~~g~n~t~~~v~~~~~~~~~~~~~~FG~~~v~Dd~lt~gp~~~Sk~VGRaqG~~~~~~----~ 107 (188)
..+.|...|+.| +.|.-.+. |.-.++..-........-...|+++.|+++|.+|.. -+-||...|+-+... .
T Consensus 12 ~~p~~vqel~VyEiNE~dr~s-Pa~l~l~~k~~~~~~~~~~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k 88 (195)
T 4h6b_A 12 ASPGHVQELFVYEINERDRGS-PVFLPFGGKKQPGTDAHVNSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQK 88 (195)
T ss_dssp ----CCEEEEEEEECCSCSCC-CCCBCTTCCBCTTTCCBCCCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTT
T ss_pred CCCceeEEEEEEEecccccCC-cceeecccccCccccccccccccccccccccccccc--cccccccccEEEEEeecCCC
Confidence 355677788888 55554332 222222211100001113459999999999999986 788999999976653 2
Q ss_pred CCCceeEEEEEEEEEccCcccCceEEEecCCCCCCCcceeEEeccccceeceEEEEEEEEEEe
Q 045658 108 DANNFAIVMYIDFALTSGEFKGSSFSVFSRNPVSEPSRELAVVGGRGKFRMARGFAVLKTAYF 170 (188)
Q Consensus 108 ~~~~~~~~~~~~~vF~~g~~~GSTL~v~G~~~~~~~~~E~aVVGGTG~Fr~ArGya~~~t~~~ 170 (188)
. + ..+--.+++.|.+ .| +|+++|..-. -+..-++|+||||.|+.|+|-+++..+-+
T Consensus 89 ~-G-dryEci~Tf~fGD---~G-hIsvqGpy~t-~eDs~lAITGGTGiF~Ga~GqVkl~qiv~ 144 (195)
T 4h6b_A 89 N-G-DRYEALYSFYFGD---YG-HISVQGPYIT-YEDSYLAITGGSGIFAGCYGQAKLHQIIF 144 (195)
T ss_dssp T-E-EEEEEEEEEECGG---GC-EEEEEEEEET-TBCEEEEEEEESGGGTTCEEEEEEEEEET
T ss_pred C-C-ceEEEEEEEEecC---Cc-eEEEecceec-cCceeEEEecCcceEcccEEEEEEeEeee
Confidence 2 2 3455667788865 35 7999999854 34567999999999999999999888764
No 3
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=44.21 E-value=1e+02 Score=23.26 Aligned_cols=88 Identities=22% Similarity=0.214 Sum_probs=51.6
Q ss_pred CcceeeeeEEEEEecCCCCceeEEEEEEEEE-ccCcccCc-eEEEecCCCCCCCcceeEEec--cccceeceEEEEEEEE
Q 045658 92 SEIIGNAQGLYVSSSQDANNFAIVMYIDFAL-TSGEFKGS-SFSVFSRNPVSEPSRELAVVG--GRGKFRMARGFAVLKT 167 (188)
Q Consensus 92 Sk~VGRaqG~~~~~~~~~~~~~~~~~~~~vF-~~g~~~GS-TL~v~G~~~~~~~~~E~aVVG--GTG~Fr~ArGya~~~t 167 (188)
-.+.|+.++-++.+-.+.+ .+.++.+..+= +-..-+|| .|+-.|..........|-||= |||++...+|-..+..
T Consensus 45 G~leGts~~~~L~~~~~~G-~A~yva~E~f~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeLaGl~G~g~~~~ 123 (138)
T 2q03_A 45 GVLQGHSEIRYLMSYQDNA-NATFVGFEHFTGSLGDKKGSFILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVS 123 (138)
T ss_dssp SSEEEEEEEEEEEEEEETT-EEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEECTTCCEETTTTEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCC-cEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEEE
Confidence 3477888888877665423 44444433211 11122443 334445444334457888998 9999999999999864
Q ss_pred EEecCCCCceEEEEEEE
Q 045658 168 AYFNGTNGDAIIDYNVS 184 (188)
Q Consensus 168 ~~~~~~~~~~i~e~~V~ 184 (188)
.. .+..-++|+..
T Consensus 124 ~~----~G~h~Y~~~y~ 136 (138)
T 2q03_A 124 TE----NGQANYQITLQ 136 (138)
T ss_dssp CS----TTEEEEEEEEE
T ss_pred ec----CCceEEEEEEe
Confidence 21 24445666654
No 4
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=22.31 E-value=2.5e+02 Score=21.05 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=51.4
Q ss_pred CcceeeeeEEEEEecCC-CCceeEEEEEEEEE-ccCcccCc-eEEEecCCCCCCCcceeEEec--cccceeceEEEEEEE
Q 045658 92 SEIIGNAQGLYVSSSQD-ANNFAIVMYIDFAL-TSGEFKGS-SFSVFSRNPVSEPSRELAVVG--GRGKFRMARGFAVLK 166 (188)
Q Consensus 92 Sk~VGRaqG~~~~~~~~-~~~~~~~~~~~~vF-~~g~~~GS-TL~v~G~~~~~~~~~E~aVVG--GTG~Fr~ArGya~~~ 166 (188)
-.+.|+.++-++.+-.+ .+ .+.++.+..+= +-..-+|| .|+-.|..........+-||= |||++...+|-..+.
T Consensus 41 G~leGts~~~~L~~~~~~~G-~A~yva~E~f~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeL~Gl~G~g~~~ 119 (141)
T 2ooj_A 41 GELEARSQGEMLSAMTAVKG-SAGYVAIEQVVGKLCGRQGSFVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMAIS 119 (141)
T ss_dssp SSEEEEEEEEEEEEECSSTT-CEEEEEEEEEEEEETTEEEEEEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEEEEE
T ss_pred eeEEEEEEEEEEEEEcCCCC-cEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEE
Confidence 44678888888877654 12 33344332111 11122443 344455555445568889998 999999999999987
Q ss_pred EEEecCCCCceEEEEEEEE
Q 045658 167 TAYFNGTNGDAIIDYNVSL 185 (188)
Q Consensus 167 t~~~~~~~~~~i~e~~V~v 185 (188)
.. + +..-++||..+
T Consensus 120 ~~--~---G~h~y~ldy~l 133 (141)
T 2ooj_A 120 IE--N---GQHFYEFSFCF 133 (141)
T ss_dssp EE--T---TEEEEEEEEEE
T ss_pred Ec--C---CeEEEEEEEEc
Confidence 43 2 33445555443
No 5
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=18.45 E-value=63 Score=27.43 Aligned_cols=53 Identities=25% Similarity=0.271 Sum_probs=34.0
Q ss_pred eeEEEEEEEEEccCcccCceEEEe-cCCCCCCCcceeEEeccccce---------eceEEEEEEE
Q 045658 112 FAIVMYIDFALTSGEFKGSSFSVF-SRNPVSEPSRELAVVGGRGKF---------RMARGFAVLK 166 (188)
Q Consensus 112 ~~~~~~~~~vF~~g~~~GSTL~v~-G~~~~~~~~~E~aVVGGTG~F---------r~ArGya~~~ 166 (188)
..|-..|--.|++|.++||--++. |.... ....-+-|=|||.| |.|+||...+
T Consensus 373 stwnivmpsyfndgghkgsgaqvevgslni--rlgtgaavwgtgyfggidnsattrlatgyyrvr 435 (438)
T 3h6j_A 373 STWNIVMPSYFNDGGHKGSGAQVEVGSLNI--RLGTGAAVWGTGYFGGIDNSATTRLATGYYRVR 435 (438)
T ss_dssp SCCEECCCEEEESSSEEEESEEEEECSSEE--EEEECSBSBCCSCBTTTBCSGGGCBSEEEEEEE
T ss_pred cceeEeccceecCCCcCCccceEEeeeEEE--EeccCceeeeccccccccchhhheeccceEEEE
Confidence 557788888999999999865552 22211 11222445577777 6778887655
No 6
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=15.44 E-value=80 Score=20.54 Aligned_cols=16 Identities=44% Similarity=0.748 Sum_probs=13.8
Q ss_pred eeeeCCCCCCcceeee
Q 045658 83 ALRVGPESNSEIIGNA 98 (188)
Q Consensus 83 ~lt~gp~~~Sk~VGRa 98 (188)
.|+.+|+.++++++.+
T Consensus 12 nvRs~P~~~~~vi~~l 27 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTL 27 (74)
T ss_dssp EEESSSSTTTCEEEEE
T ss_pred EEEcCCCCCChHHEEE
Confidence 6889999999998875
No 7
>2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor; electron transport; HET: HEM; 2.00A {Desulfovibrio vulgaris} SCOP: a.138.1.1 PDB: 1gws_A* 1h29_A*
Probab=13.76 E-value=39 Score=30.71 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=0.0
Q ss_pred CC-ceeehhhHHHHHHhhhhc
Q 045658 1 MQ-NRVIFCLAVILCVAAAPA 20 (188)
Q Consensus 1 m~-~~~~~~~~~~~~~~~~~~ 20 (188)
|+ +|++|.|.++|+++++++
T Consensus 1 m~~~kr~~~~~~~~~~l~~~~ 21 (545)
T 2cvc_A 1 MRNGRTLLRWAGVLAATAIIG 21 (545)
T ss_dssp ---------------------
T ss_pred CCccchhHHHHHHHHHHHHHH
Confidence 64 889899888877766655
No 8
>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound cytochrome C subunit; tetraheme cytochrome, electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A*
Probab=11.11 E-value=54 Score=24.00 Aligned_cols=8 Identities=13% Similarity=0.289 Sum_probs=0.0
Q ss_pred CCceeehh
Q 045658 1 MQNRVIFC 8 (188)
Q Consensus 1 m~~~~~~~ 8 (188)
|+.|.++.
T Consensus 1 Mkk~~~~~ 8 (130)
T 2a3m_A 1 MRKSLFAV 8 (130)
T ss_dssp --------
T ss_pred CchhHHHH
Confidence 77766444
No 9
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=11.08 E-value=1.1e+02 Score=20.08 Aligned_cols=16 Identities=31% Similarity=0.638 Sum_probs=13.1
Q ss_pred eeeeCCCCCCcceeee
Q 045658 83 ALRVGPESNSEIIGNA 98 (188)
Q Consensus 83 ~lt~gp~~~Sk~VGRa 98 (188)
.|+.+|+.+++.+|.+
T Consensus 14 nvR~~Ps~~~~ii~~l 29 (76)
T 2kt8_A 14 NVREGASTSSKVIGSL 29 (76)
T ss_dssp EEESSSSTTSCEEEEE
T ss_pred EEEcCCCCCChhhEEE
Confidence 6888999888888764
No 10
>2e56_A Lymphocyte antigen 96; innate immunity, lipid-binding, lipid binding protein; HET: NAG MYR; 2.00A {Homo sapiens} PDB: 2e59_A* 3fxi_C* 3ula_B* 2z65_C*
Probab=11.07 E-value=3.5e+02 Score=20.60 Aligned_cols=34 Identities=9% Similarity=0.217 Sum_probs=22.5
Q ss_pred ceeceEEEEEEEEEEecCCCCceEEEEEEEEEeC
Q 045658 155 KFRMARGFAVLKTAYFNGTNGDAIIDYNVSLFHY 188 (188)
Q Consensus 155 ~Fr~ArGya~~~t~~~~~~~~~~i~e~~V~v~hy 188 (188)
.+++-+|....-.--.+..++..+.=+|.++.||
T Consensus 107 g~~fpkG~Y~~~~ea~~~~~e~~l~ClNfTii~~ 140 (144)
T 2e56_A 107 GIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQ 140 (144)
T ss_dssp CCTTCCSEEEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred cEecCCCcEEEEEEEecCCchheEEEeeEEEEEc
Confidence 4677778433333333445567899999999997
Done!