Query 045659
Match_columns 461
No_of_seqs 278 out of 1959
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 04:11:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.1E-57 2.4E-62 439.2 53.9 430 27-460 14-447 (455)
2 PRK10189 MATE family multidrug 100.0 6.2E-54 1.3E-58 417.2 56.4 437 19-460 20-466 (478)
3 PRK00187 multidrug efflux prot 100.0 8.6E-53 1.9E-57 409.4 53.8 428 26-456 6-444 (464)
4 PRK10367 DNA-damage-inducible 100.0 6.6E-51 1.4E-55 392.4 52.8 423 27-460 6-434 (441)
5 PRK01766 multidrug efflux prot 100.0 8.8E-51 1.9E-55 396.9 53.8 430 27-459 9-445 (456)
6 PRK09575 vmrA multidrug efflux 100.0 5E-50 1.1E-54 389.5 51.9 423 27-455 9-435 (453)
7 TIGR01695 mviN integral membra 100.0 5.8E-38 1.2E-42 311.4 49.3 413 32-456 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 5.3E-38 1.1E-42 310.7 46.9 415 33-456 2-434 (488)
9 TIGR00797 matE putative efflux 100.0 1.2E-37 2.7E-42 293.7 42.5 338 38-378 1-341 (342)
10 PRK15099 O-antigen translocase 100.0 1E-35 2.2E-40 287.4 44.9 405 32-455 3-411 (416)
11 KOG1347 Uncharacterized membra 100.0 3.3E-37 7.2E-42 294.3 30.8 434 26-461 24-457 (473)
12 PF03023 MVIN: MviN-like prote 100.0 3.3E-31 7.1E-36 255.9 49.0 386 60-456 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 7.3E-29 1.6E-33 234.9 50.1 421 28-456 5-437 (518)
14 PRK10459 colanic acid exporter 100.0 6.3E-29 1.4E-33 245.7 47.1 398 29-455 4-404 (492)
15 COG2244 RfbX Membrane protein 100.0 8.6E-27 1.9E-31 229.9 41.0 391 27-440 3-396 (480)
16 PRK00187 multidrug efflux prot 99.9 7.5E-22 1.6E-26 192.5 26.9 204 26-230 232-442 (464)
17 PRK10367 DNA-damage-inducible 99.9 2.9E-21 6.3E-26 186.7 27.2 207 247-455 5-211 (441)
18 COG0534 NorM Na+-driven multid 99.9 4E-21 8.7E-26 185.7 27.6 209 246-457 12-222 (455)
19 PRK10189 MATE family multidrug 99.9 4.7E-21 1E-25 187.0 28.1 205 247-454 25-235 (478)
20 PRK09575 vmrA multidrug efflux 99.9 4.8E-21 1.1E-25 186.6 25.9 207 247-455 8-214 (453)
21 PRK01766 multidrug efflux prot 99.9 5.7E-21 1.2E-25 187.0 25.5 206 26-232 235-442 (456)
22 TIGR01695 mviN integral membra 99.8 1.8E-18 3.9E-23 171.9 31.0 230 27-266 220-454 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 4.5E-17 9.7E-22 148.5 31.7 271 33-320 2-273 (273)
24 TIGR00797 matE putative efflux 99.8 2.6E-17 5.5E-22 155.3 25.9 194 259-455 1-196 (342)
25 PF03023 MVIN: MviN-like prote 99.8 1.9E-16 4.2E-21 153.3 31.2 206 27-234 195-405 (451)
26 TIGR02900 spore_V_B stage V sp 99.8 5.5E-17 1.2E-21 160.7 24.6 201 26-231 221-433 (488)
27 PF01554 MatE: MatE; InterPro 99.8 1.1E-18 2.5E-23 145.7 9.0 162 259-422 1-162 (162)
28 PF01554 MatE: MatE; InterPro 99.8 1.1E-18 2.3E-23 145.8 6.5 160 38-198 1-162 (162)
29 COG0728 MviN Uncharacterized m 99.8 1.3E-14 2.8E-19 138.4 34.5 234 27-269 229-467 (518)
30 PRK10459 colanic acid exporter 99.7 3.4E-14 7.3E-19 140.8 33.9 199 27-231 204-404 (492)
31 PRK15099 O-antigen translocase 99.7 1.2E-14 2.6E-19 140.7 25.2 199 25-230 210-410 (416)
32 PF13440 Polysacc_synt_3: Poly 99.7 2.7E-13 5.8E-18 121.9 31.1 247 48-318 2-250 (251)
33 COG2244 RfbX Membrane protein 99.6 1.9E-13 4.1E-18 135.1 25.6 185 27-217 210-396 (480)
34 PF04506 Rft-1: Rft protein; 99.4 1.4E-09 3E-14 106.4 31.8 421 33-456 4-470 (549)
35 KOG1347 Uncharacterized membra 99.3 2.3E-10 5E-15 110.3 20.0 205 247-455 24-229 (473)
36 KOG2864 Nuclear division RFT1 99.2 4.2E-07 9.1E-12 83.4 32.2 415 27-455 5-448 (530)
37 PF07260 ANKH: Progressive ank 98.9 6.1E-06 1.3E-10 72.7 28.2 266 27-300 8-288 (345)
38 PF04506 Rft-1: Rft protein; 98.6 9.6E-06 2.1E-10 79.8 20.8 202 30-232 253-470 (549)
39 PF14667 Polysacc_synt_C: Poly 98.5 1.9E-05 4.1E-10 64.3 17.2 79 152-232 2-80 (146)
40 PF14667 Polysacc_synt_C: Poly 98.2 8.4E-06 1.8E-10 66.3 9.6 79 375-456 2-80 (146)
41 PF01943 Polysacc_synt: Polysa 98.2 0.00067 1.4E-08 61.5 22.0 181 260-455 8-190 (273)
42 KOG2864 Nuclear division RFT1 98.1 0.00016 3.5E-09 66.9 15.8 200 30-231 239-448 (530)
43 PF13440 Polysacc_synt_3: Poly 98.0 0.0047 1E-07 55.2 22.5 163 275-454 8-171 (251)
44 COG4267 Predicted membrane pro 97.6 0.049 1.1E-06 49.7 35.0 345 78-453 72-439 (467)
45 PF07260 ANKH: Progressive ank 97.4 0.088 1.9E-06 47.2 21.6 159 247-411 7-168 (345)
46 COG4267 Predicted membrane pro 77.3 65 0.0014 30.3 21.4 137 302-455 74-210 (467)
47 PF04505 Dispanin: Interferon- 65.0 46 0.00099 23.7 6.8 40 306-345 34-73 (82)
48 COG2060 KdpA K+-transporting A 47.1 2.9E+02 0.0064 27.2 12.9 132 204-352 59-190 (560)
49 PRK09546 zntB zinc transporter 43.3 64 0.0014 30.0 6.1 50 406-458 266-323 (324)
50 PF03814 KdpA: Potassium-trans 38.6 1.9E+02 0.0041 28.9 8.3 133 204-353 52-184 (552)
51 PF05975 EcsB: Bacterial ABC t 38.0 3.7E+02 0.008 25.7 16.3 35 102-136 89-124 (386)
52 TIGR00383 corA magnesium Mg(2+ 36.2 1.2E+02 0.0027 28.0 6.8 52 404-458 258-317 (318)
53 PRK05482 potassium-transportin 32.9 4.1E+02 0.0088 26.9 9.7 131 204-351 57-187 (559)
54 KOG2468 Dolichol kinase [Lipid 32.7 4.8E+02 0.01 25.5 9.6 73 257-338 379-451 (510)
55 TIGR01478 STEVOR variant surfa 31.2 66 0.0014 28.8 3.7 32 430-461 259-293 (295)
56 PRK11085 magnesium/nickel/coba 30.6 1.6E+02 0.0035 27.3 6.4 50 406-458 258-315 (316)
57 TIGR00680 kdpA K+-transporting 29.1 6.1E+02 0.013 25.5 13.9 132 204-352 60-191 (563)
58 COG0598 CorA Mg2+ and Co2+ tra 26.8 1.5E+02 0.0033 27.6 5.6 44 414-458 270-321 (322)
59 PRK10739 putative antibiotic t 26.6 4E+02 0.0088 22.7 8.4 59 313-375 21-79 (197)
60 PTZ00370 STEVOR; Provisional 26.5 95 0.0021 27.9 3.9 27 208-234 257-283 (296)
61 PF01102 Glycophorin_A: Glycop 26.4 79 0.0017 24.5 3.0 24 208-231 67-90 (122)
62 PF04235 DUF418: Protein of un 26.0 3.6E+02 0.0078 21.9 14.5 28 324-351 9-36 (163)
63 PTZ00370 STEVOR; Provisional 25.3 68 0.0015 28.8 2.8 32 430-461 255-289 (296)
64 COG2211 MelB Na+/melibiose sym 24.7 6.9E+02 0.015 24.7 21.0 57 28-85 10-69 (467)
65 PF03904 DUF334: Domain of unk 23.7 4.9E+02 0.011 22.6 7.7 39 101-139 141-179 (230)
66 COG3162 Predicted membrane pro 22.8 3.2E+02 0.0069 20.2 7.6 46 19-67 12-58 (102)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.1e-57 Score=439.24 Aligned_cols=430 Identities=25% Similarity=0.363 Sum_probs=411.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhhH
Q 045659 27 KEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRL 106 (461)
Q Consensus 27 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~ 106 (461)
+..|+++++++|.+++++.+.+++.+|+.++||+|++++++.+++.++..+. ..+..|++.++++.+||++|+||++++
T Consensus 14 ~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~~~ 92 (455)
T COG0534 14 KILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRKKA 92 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchHHH
Confidence 6899999999999999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 045659 107 GIHTNSAIISLIAICPIICIP-WIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITY 185 (461)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 185 (461)
++..++++.++++++++..++ +.+.++++.+++.++|+.+.+.+|+++..++.|+..++....+.+|+.||+|.+++.+
T Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~ 172 (455)
T COG0534 93 KRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYIL 172 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence 999999999999999888876 9999999999998889999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHhh-cC-CCcchhHHHHHHHHHHHHHHHHHHHhcCcc-cchhccCCCHHHHHHHHHHHHHhhHHHH
Q 045659 186 FCILCFHIPVCWILVFK-LK-LGILGAAAAFSLSTWLNVVLVSPYVMYSSS-CKDTRAKLSKEAFLAIKQFFAFGLPSAL 262 (461)
Q Consensus 186 ~~~~~~~i~~~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~~~~~p~~~ 262 (461)
+.+.++|+++|++++++ ++ +|+.|+++||++++.+..++..+++.|+++ ......+..+.+++.+|++++.|+|.++
T Consensus 173 ~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~ 252 (455)
T COG0534 173 LLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFL 252 (455)
T ss_pred HHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHH
Confidence 99999999999999998 56 999999999999999999999999987764 2222233335568999999999999999
Q ss_pred HHHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHH
Q 045659 263 MLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLE 342 (461)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (461)
++......+...+.+.+++| ++.+|+|+++.++.++..+++.+++++..|.+++++|+||.|++++..+.+.++++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~ 330 (455)
T COG0534 253 ESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLI 330 (455)
T ss_pred HHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHH
Q 045659 343 AVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGV 422 (461)
Q Consensus 343 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~ 422 (461)
+...+.+++++++++..+|++|+|+.+.+..++++.++..++++.+.+..+.++|.||+|.+++.++.+.|.+.+|+.++
T Consensus 331 ~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~ 410 (455)
T COG0534 331 ALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYL 410 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCchhHhhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 045659 423 LGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCFTNWNK 460 (461)
Q Consensus 423 l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~w~~ 460 (461)
+...+ +|..|+|++..+++.+..++..++++|++|++
T Consensus 411 l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (455)
T COG0534 411 LGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRR 447 (455)
T ss_pred Hhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 98775 79999999999999999999999999999975
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=6.2e-54 Score=417.22 Aligned_cols=437 Identities=16% Similarity=0.211 Sum_probs=403.1
Q ss_pred hhchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhh
Q 045659 19 LVLVGEFVKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAF 98 (461)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~ 98 (461)
+..|+- +..|++++.++|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..|++++.++.++|++
T Consensus 20 ~~~~~~--~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~ 96 (478)
T PRK10189 20 RKSYRV--LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSL 96 (478)
T ss_pred hhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 334443 6799999999999999999999999999999999999999999999999988 9999999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC--CChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHc
Q 045659 99 GAQQYQRLGIHTNSAIISLIAICPIICIP-WIFMNKLLLTLG--QDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQ 175 (461)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 175 (461)
|+||+|++++..++++.++..++++.+++ +.+.+++..++. .|+|+.+.+.+|+++..++.|+..+.....+.+|+.
T Consensus 97 Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~ 176 (478)
T PRK10189 97 GKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGA 176 (478)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988887 888999999994 699999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHhhhhHHHHHHHHhh----cCCCcchhHHHHHHHHHHHHHHHHHHHhcCcc--cchhccC-CCHHHHH
Q 045659 176 SLICPMLITYFCILCFHIPVCWILVFK----LKLGILGAAAAFSLSTWLNVVLVSPYVMYSSS--CKDTRAK-LSKEAFL 248 (461)
Q Consensus 176 ~~~~~~~~~~~~~~~~~i~~~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~ 248 (461)
||++.++..++...++|++++++++++ +++|+.|+++|+.+++.+..++..+++.++++ .+.++++ ..+.+++
T Consensus 177 G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (478)
T PRK10189 177 GNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFA 256 (478)
T ss_pred CchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHH
Confidence 999999999999999999999999975 37899999999999999998877666654322 2222221 1223578
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHH
Q 045659 249 AIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAA 328 (461)
Q Consensus 249 ~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~ 328 (461)
.+|++++.|+|.+++.........+.+.+++++| ++++++|+++.++.++..++..+++++..|.+++++|+||.+++
T Consensus 257 ~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a 334 (478)
T PRK10189 257 IIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQA 334 (478)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 8999999999999999999998888888888887 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHH
Q 045659 329 RRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACIN 408 (461)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 408 (461)
|+..+.+.++++.++..++++++++++++..+|++|+|+.+.+..++++.++..++++++....+.++|.||++.+++++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~ 414 (478)
T PRK10189 335 ERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVS 414 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHhcCCchhHhhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 045659 409 FVAFYLVGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCFTNWNK 460 (461)
Q Consensus 409 ~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~w~~ 460 (461)
+.+.|++.+|+.++++...++|+.|+|++..+++.+..++.++++++.+|+|
T Consensus 415 ~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 415 MLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 9999999999999998777899999999999999999999999999999987
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=8.6e-53 Score=409.38 Aligned_cols=428 Identities=20% Similarity=0.299 Sum_probs=392.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhh
Q 045659 26 VKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQR 105 (461)
Q Consensus 26 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 105 (461)
++..|++++.++|.+++++.+.+...+|+.+++|+|++++++++++.++..+. ..+..|++++.++.++|++|+||+|+
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 36899999999999999999999999999999999999999999999999998 88899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 045659 106 LGIHTNSAIISLIAICPIICIPWIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITY 185 (461)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 185 (461)
+++..+.++.+..+++++..++..+.+++++.++.|+|+.+.+.+|+++..++.|+..+....++++|+.|+++.++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999999887775577999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHhh----cCCCcchhHHHHHHHHHHHHHHHHHHHhcCccc-chh-ccCCCHHHHHHHHHHHHHhhH
Q 045659 186 FCILCFHIPVCWILVFK----LKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSC-KDT-RAKLSKEAFLAIKQFFAFGLP 259 (461)
Q Consensus 186 ~~~~~~~i~~~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~k~~~~~~~p 259 (461)
+.+.++|+++|++++++ +++|+.|+++|+.+++.+..+...++++++++. +.+ +++..+.+++..|++++.++|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 99999999999999975 258999999999999988877666666544322 111 112223457789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 045659 260 SALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVA 339 (461)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (461)
.++++..+.....++..+++++| +++++++++++++..+...+..+++++..+.++|++|+||.|++++..+.+..++
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~ 322 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFG 322 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccccC--cH---HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHH
Q 045659 340 TLEAVIASTILFSCRFIVGYAYSN--DK---QVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYL 414 (461)
Q Consensus 340 ~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 414 (461)
..++++.+++++++++++.++|++ |+ |+.+.+..++++.+++.++++++....+++++.||+|.+++.++++.|+
T Consensus 323 ~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~ 402 (464)
T PRK00187 323 AVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWL 402 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHH
Confidence 999999999999999999999964 43 6888999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhcCCchhHhhHHHHHHHHHHHHHHHHHHHhc
Q 045659 415 VGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCFT 456 (461)
Q Consensus 415 ~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 456 (461)
+++|+.+++.+.+++|+.|+|+++.+++.+..+....+++++
T Consensus 403 ~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 403 VGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred HHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887789999999999999999988776666544
No 4
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=6.6e-51 Score=392.42 Aligned_cols=423 Identities=17% Similarity=0.137 Sum_probs=375.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhh
Q 045659 27 KEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHL-GQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQR 105 (461)
Q Consensus 27 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 105 (461)
++.|++++.++|.+++++.+.+++.+|+.+++|+ |++++++++++.++..+. ..+..+++.+.++.+||++|+||+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 6789999999999999999999999999999998 788999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHH
Q 045659 106 LGIHTNSAIISLIAICPIICIP-WIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLIT 184 (461)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 184 (461)
+++..++++.++++.+++..++ ..+.+++..+++.|+|+.+.+.+|+++..++.|+..+..+..+.+|+.||+|.++..
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 9999999999999999988876 778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcCcccc-hhccCCCHHHHHHHHHHHHHhhHHHHH
Q 045659 185 YFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCK-DTRAKLSKEAFLAIKQFFAFGLPSALM 263 (461)
Q Consensus 185 ~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~~~~p~~~~ 263 (461)
++++.++|+++++++++.+++|+.|+++|+.+++.+..+...+++.++++.+ .+.+..+...++..|++++.|.|.+++
T Consensus 165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 244 (441)
T PRK10367 165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLR 244 (441)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHH
Confidence 9999999999999999988999999999999999999888777766432211 111111111134789999999999999
Q ss_pred HHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHH
Q 045659 264 LCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEA 343 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (461)
+......+.+.+.+++++| ++++++|+++.++.++.+++..+++++..|.++|++|+||.|++|+..+++.+++...+
T Consensus 245 ~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~ 322 (441)
T PRK10367 245 SLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVA 322 (441)
T ss_pred HHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCc---cchhHHHHHHHHHHhhhhHH
Q 045659 344 VIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGW---QHIGACINFVAFYLVGLPVG 420 (461)
Q Consensus 344 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~i~l~ 420 (461)
...+++++++++++..+|++|+|+.+.+..++++.++..+......+...++++.+| +|.+++++.+..|+..++.
T Consensus 323 ~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~- 401 (441)
T PRK10367 323 LLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL- 401 (441)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999999999988764433344444555555555 9999999999876422221
Q ss_pred HHHHHhcCCchhHhhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 045659 421 GVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCFTNWNK 460 (461)
Q Consensus 421 ~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~w~~ 460 (461)
+++|..|+|++..+++.+..++..+++|| +|||
T Consensus 402 ------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~-~~~~ 434 (441)
T PRK10367 402 ------PWLGNHGLWLALTVFLALRGLSLAAIWRR-HWRN 434 (441)
T ss_pred ------HHcCchHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 24699999999999999999998887765 4876
No 5
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=8.8e-51 Score=396.92 Aligned_cols=430 Identities=23% Similarity=0.349 Sum_probs=399.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhhH
Q 045659 27 KEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRL 106 (461)
Q Consensus 27 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~ 106 (461)
+..|++++.++|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..|++.+..+.+||++|+||+|+.
T Consensus 9 ~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~~~~ 87 (456)
T PRK01766 9 SEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRRERI 87 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 7899999999999999999999999999999999999999999999988877 888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 045659 107 GIHTNSAIISLIAICPIICIP-WIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITY 185 (461)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 185 (461)
++..+.++.+++.++++.+++ +.+.+++..+++.|++..+.+.+|+++.+++.++..+....++++|+.|+++.++..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 167 (456)
T PRK01766 88 AHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIG 167 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 999999999999999988876 7888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHhh----cCCCcchhHHHHHHHHHHHHHHHHHHHhcCcccc-h-hccCCCHHHHHHHHHHHHHhhH
Q 045659 186 FCILCFHIPVCWILVFK----LKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCK-D-TRAKLSKEAFLAIKQFFAFGLP 259 (461)
Q Consensus 186 ~~~~~~~i~~~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~k~~~~~~~p 259 (461)
.++.++|+++++++++. +++|+.|+++++.+++.+..++..++++++++.+ . .+.++.+.+++..|++++.++|
T Consensus 168 ~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~P 247 (456)
T PRK01766 168 FLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLP 247 (456)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccch
Confidence 99999999999999864 4689999999999999999998887776554321 1 1222223457789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 045659 260 SALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVA 339 (461)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (461)
.+++...+...+.++..+++++| ++++++++++.++.++...+..+++++..+.++|++|+||.+++++..+.+.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~ 325 (456)
T PRK01766 248 IGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVG 325 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999887 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhH
Q 045659 340 TLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPV 419 (461)
Q Consensus 340 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 419 (461)
+.++++.+++++.+++++..+|++|+|+.+.+..++++..+..++++++....+++++.||++.++++++.+.|++.+|+
T Consensus 326 ~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~ 405 (456)
T PRK01766 326 LGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPL 405 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred HHHHHHhcCCchhHhhHHHHHHHHHHHHHHHHHHHhcCCC
Q 045659 420 GGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCFTNWN 459 (461)
Q Consensus 420 ~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~w~ 459 (461)
.+++...+++|+.|+|+++.+++++..++.++++++.+||
T Consensus 406 ~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (456)
T PRK01766 406 GYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQ 445 (456)
T ss_pred HHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877789999999999999999999999999887776
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=5e-50 Score=389.50 Aligned_cols=423 Identities=16% Similarity=0.165 Sum_probs=388.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhh
Q 045659 27 KEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHL-GQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQR 105 (461)
Q Consensus 27 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 105 (461)
+..|++++.++|.+++++.+.++..+|+.+++|+ |++++++++++.++..+. ..+..+++.+.++.++|++|+||+|+
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 5789999999999999999999999999999995 999999999999999998 88899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHH
Q 045659 106 LGIHTNSAIISLIAICPIICIP-WIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLIT 184 (461)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 184 (461)
.++..++++.++.+++++.+++ ..+.++++++++.|++..+.+.+|+++..++.++..+.....+.+|+.|+++.++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 9999999999999999988887 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcCccc-chhccCCCHHHHHHHHHHHHHhhHHHHH
Q 045659 185 YFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSC-KDTRAKLSKEAFLAIKQFFAFGLPSALM 263 (461)
Q Consensus 185 ~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~~~~p~~~~ 263 (461)
++.+.++|+++++++++.+++|+.|+++|+++++.+..++..++++++++. +.+.+ ..+.+++..|++++.|+|..++
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~il~ig~P~~~~ 246 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLK-ELRFNWSLAPKIVLLGSSSFFM 246 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeec-cCCcCHHHHHHHHHhChhHHHH
Confidence 999999999999999988889999999999999999998877776644332 22212 2234577899999999999999
Q ss_pred HHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHH
Q 045659 264 LCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEA 343 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (461)
.....+...+.+.+.+++++ ++++++++++.++..+...+..+++++..|.++|++|+||.|++++..+.+.++++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~ 325 (453)
T PRK09575 247 YLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAG 325 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888873 56899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccccC-cHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHH
Q 045659 344 VIASTILFSCRFIVGYAYSN-DKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGV 422 (461)
Q Consensus 344 ~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~ 422 (461)
++.+++++++++++..+|++ |+|+.+.+.+++++.+++.+++++.....+.+++.||++.++..++... .+++|+.++
T Consensus 326 ~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~v~ip~~~l 404 (453)
T PRK09575 326 IAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNM-LIQLPFLFI 404 (453)
T ss_pred HHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhH-HHHHHHHHH
Confidence 99999999999999999985 7899999999999999999999999999999999999999999998765 789999999
Q ss_pred HHHhcCCchhHhhHHHHHHHHHHHHHHHHHHHh
Q 045659 423 LGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCF 455 (461)
Q Consensus 423 l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 455 (461)
++.. +|+.|+|+++.+++.+..++...+++|
T Consensus 405 l~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 405 LPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 8654 699999999999999988877666654
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=5.8e-38 Score=311.40 Aligned_cols=413 Identities=13% Similarity=0.076 Sum_probs=348.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhc-cChHHH-HHHHHHHHHHHHHHHHHH-HhhHhhHHHHHHHhhCCcchhhHHH
Q 045659 32 LSRIAAPMVGIFLFDYLLQVVSTMMVGH-LGQLQL-ASVAIATSVTNVVGFSFL-SGLAGGLETLCGQAFGAQQYQRLGI 108 (461)
Q Consensus 32 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-~~~~~~~~i~~~~~~~~~-~g~~~~~~~~~s~~~g~~~~~~~~~ 108 (461)
+.|.+.-..++++++.+.+++|..+++| +|++++ ++++.+.++......... .|++++..+...++.+++ |+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5788889999999999999999999999 799999 899999999977623333 468888777776654322 56676
Q ss_pred HHHHHHHHHHHHHH-HHHHH-HHhHHHHHHHc--CCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHH
Q 045659 109 HTNSAIISLIAICP-IICIP-WIFMNKLLLTL--GQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLIT 184 (461)
Q Consensus 109 ~~~~~~~~~~~~~~-~~~~~-~~~~~~l~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 184 (461)
.+.++.......+. +.+++ +++.+++..++ +.+++..+.+.+|+++..++.++..+....++++|+.||++.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 77776665554444 44455 77888888877 4567777899999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHhhcCCCcchhH--HHHHHHHHHHHHHHHHHHhcCcccchhccCCCHHHHHHHHHHHHHhhHHHH
Q 045659 185 YFCILCFHIPVCWILVFKLKLGILGAA--AAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSAL 262 (461)
Q Consensus 185 ~~~~~~~~i~~~~~li~~~~~g~~g~~--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~ 262 (461)
++...+.++...+++. +++|..|++ ++++++..+..++..++.+|++. +.+. +. +.+++..|++++++.|..+
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~-~~-~~~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGF-LLKP-RF-NFRDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-cccC-cC-CCCChhHHHHHHHHHHHHH
Confidence 9998887766544433 478999988 99999999998888776654431 1111 11 1235678999999999999
Q ss_pred HHHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHH
Q 045659 263 MLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFI-IPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATL 341 (461)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (461)
++....+...+|..+.+.++ ++++++|+.+.++.+++.. +..+++++..|.+++++++||.+++++..+++.++...
T Consensus 235 ~~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 235 GSSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998877766 7799999999999988765 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhccccC----cHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhh
Q 045659 342 EAVIASTILFSCRFIVGYAYSN----DKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGL 417 (461)
Q Consensus 342 ~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 417 (461)
+++|.+++++++++++..++.+ |+|.++.+..++++++++.++.+++....+.+++.||+|.+++.+.... ++++
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i 391 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNA 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHH
Confidence 9999999999999999999876 5577889999999999999999999999999999999999999999987 7899
Q ss_pred hHHHHHHHhcCCchhHhhHHHHHHHHHHHHHHHHHHHhc
Q 045659 418 PVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCFT 456 (461)
Q Consensus 418 ~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 456 (461)
++++++.. .+|..|+|+++.+++.+..++..++.+|+
T Consensus 392 ~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 392 LLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998854 46999999999999999999887777765
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=5.3e-38 Score=310.68 Aligned_cols=415 Identities=14% Similarity=0.103 Sum_probs=350.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhhHHHHHH
Q 045659 33 SRIAAPMVGIFLFDYLLQVVSTMMVGH-LGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRLGIHTN 111 (461)
Q Consensus 33 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~ 111 (461)
.|.+.|.+++++...+.+.+|+.+++| +|+|++|+++.+.++..+.......|++++..+.++|+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 6999999999999999987445567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHHHHHHhh
Q 045659 112 SAIISLIAICPIICIP-WIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILC 190 (461)
Q Consensus 112 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 190 (461)
+++.+..+.+++.+++ ..+.+++.+.+..+++. ..++++..+..++..+....++.+|+.+|++.....++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999988876 77777777766656543 246788888999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhh-----cCCCcchhHHHHHHHHHHHHHHHHHHHhcCcccc--hhccCCCHHHHHHHHHHHHHhhHHHHH
Q 045659 191 FHIPVCWILVFK-----LKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCK--DTRAKLSKEAFLAIKQFFAFGLPSALM 263 (461)
Q Consensus 191 ~~i~~~~~li~~-----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~k~~~~~~~p~~~~ 263 (461)
+++.++..++.. .+.|+.|+++++.+++.+..+...++.+|+++.+ ..+.+..+.+++..|+++++++|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 988776655432 2456778888999999888887766655443321 111122334567899999999999999
Q ss_pred HHHHHHHHHHHHHHHccCCc-----hh---hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 045659 264 LCLRWWSMEMLILSSGFLPN-----PR---LETSGL-SICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWS 334 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~-----g~---~~~~~~-~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~ 334 (461)
+.........|+.++++... .. +..+.| +++.++.+++..+..+++++..|.+++++|+||.++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999888865320 01 233444 4667788888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHH
Q 045659 335 AVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYL 414 (461)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 414 (461)
..++...++.|.++++.++++++..++.++++ +..+++++++..++..++....+.+++.||+|..++.+.... +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 99999999999999999999999999876543 577899999999999999999999999999999999999987 8
Q ss_pred hhhhHHHHHHHhcCCchhHhhHHHHHHHHHHHHHHHHHHHhc
Q 045659 415 VGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCFT 456 (461)
Q Consensus 415 ~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 456 (461)
+++++++.+...+++|+.|+++++.+++++..++..+..+|.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888544678999999999999999999988888763
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.2e-37 Score=293.71 Aligned_cols=338 Identities=29% Similarity=0.428 Sum_probs=310.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhhHHHHHHHHHHHH
Q 045659 38 PMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRLGIHTNSAIISL 117 (461)
Q Consensus 38 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 117 (461)
|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..|++++..+.++++.|++|+|+.++..++.+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999998887 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHHHHHHhhhhHHHH
Q 045659 118 IAICPIICIP-WIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILCFHIPVC 196 (461)
Q Consensus 118 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 196 (461)
...+++.+++ ..+.+++.++++.|++..+.+..++++..+..++..+.....+.+|+.||++.+...++.+.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999999887 889999999988788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hcC-CCcchhHHHHHHHHHHHHHHHHHHHhcCcccchhccCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 045659 197 WILVF-KLK-LGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLCLRWWSMEML 274 (461)
Q Consensus 197 ~~li~-~~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~ 274 (461)
++++. .++ +|..|+++++.+++.+..++..++.+|+++.+.+++...+.+++..|+++++++|..++++...+....+
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 88886 456 7899999999999999998888777754444333222233457789999999999999999999999999
Q ss_pred HHHHccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045659 275 ILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVIASTILFSCR 354 (461)
Q Consensus 275 ~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (461)
+.+++.++ ++++++|+++.++.++...+..+++++..|.+++++++||.++.++..+++.++.+.+++|.+.++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998876 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCcHHHHHHHHHHhHHH
Q 045659 355 FIVGYAYSNDKQVVDFIAAMTPLI 378 (461)
Q Consensus 355 ~~i~~l~~~~~~~~~~~~~~l~~~ 378 (461)
+++.++|++|+|+.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999988888764
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=1e-35 Score=287.38 Aligned_cols=405 Identities=11% Similarity=-0.005 Sum_probs=344.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhhHHHHH
Q 045659 32 LSRIAAPMVGIFLFDYLLQVVSTMMVGH-LGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRLGIHT 110 (461)
Q Consensus 32 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~ 110 (461)
+.|.+.+...++++..+.+++...+++| +|++++|.++..+++..++......|++++.++.++|+ ++|+|+.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 6788889999999999999999999999 69999999999999999875666889999989999988 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHHHHHHh
Q 045659 111 NSAIISLIAICPIICIP-WIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCIL 189 (461)
Q Consensus 111 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 189 (461)
++++.+.+..+++.+++ +++.+|+...+..+++. ..++.+..+..++..+.....+.+|+.||++.++..++.+.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998886 88889998888766653 24566666666677888899999999999999999999999
Q ss_pred hhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcCcccchhccCCCHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 045659 190 CFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLCLRWW 269 (461)
Q Consensus 190 ~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~ 269 (461)
++|+.+ .++... ..|+.|+++++++++.+..+...++++|+++.+.++.+. +.|++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 444432 249999999999999998887777666544322221111 23577889999999999999999999
Q ss_pred HHHHHHHHHc-cCCchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 045659 270 SMEMLILSSG-FLPNPRLETSGLSICLAITT-LHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVIAS 347 (461)
Q Consensus 270 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~i~~-~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (461)
....++.+++ .+| ++++|.|+++.|+.+ +...+..+++++..|.++++ +|.++.++..++..+....++.+.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 665 889999999999977 45788999999999999995 6789999999999999999999999
Q ss_pred HHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHHHHHhc
Q 045659 348 TILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGVLGFVV 427 (461)
Q Consensus 348 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~ 427 (461)
+.+++++++++.++.+|+ ++++.+++++++++.++...+........+.++++.....++... .+++++++++.+
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~l~i~l~~~li~-- 383 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQF-TLLTGFAHWLIP-- 383 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--
Confidence 999999999999999876 677889999999999999888888888888888887777777765 889999999854
Q ss_pred CCchhHhhHHHHHHHHHHHHHHHHHHHh
Q 045659 428 HLRGKGLWTGIVVGSAVQSTMLCLITCF 455 (461)
Q Consensus 428 ~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 455 (461)
.+|..|+++++.+++.+...+..+...+
T Consensus 384 ~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 384 LHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999877665554
No 11
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=3.3e-37 Score=294.26 Aligned_cols=434 Identities=45% Similarity=0.768 Sum_probs=414.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhh
Q 045659 26 VKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQR 105 (461)
Q Consensus 26 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 105 (461)
+.+.|++++++.|.++..+.+...+.+++.++||+|+.++++.+++.+..+.....+..|+..+..+.++|++|+++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 47899999999999999999999999999999999999999999999999997789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 045659 106 LGIHTNSAIISLIAICPIICIPWIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITY 185 (461)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 185 (461)
.....+++.......+++...++.+.+++...++.|+++...+..|.++..+..+..........++|++++.....+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcCcccchhccCCCHHHHHHHHHHHHHhhHHHHHHH
Q 045659 186 FCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLC 265 (461)
Q Consensus 186 ~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~ 265 (461)
....++++.+++++++.+++|..|++++..+++.+.......+..... ....|..+..+ ++.++++++.++|..++..
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~mic 261 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMIC 261 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeH
Confidence 999999999999999999999999999999999999988888876444 55666666666 8999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 045659 266 LRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVI 345 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (461)
+++..+....+..+.+++...+++..++..++....++++.+++.++..++++.+|++|.+++|...+.+...++.++..
T Consensus 262 lE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~ 341 (473)
T KOG1347|consen 262 LEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGAS 341 (473)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999998778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHHHHH
Q 045659 346 ASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGVLGF 425 (461)
Q Consensus 346 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~ 425 (461)
.+..+....+.+..+|++|+|+.+......+++++..++++.+.+..++.++.|+++...++++...+++++|+...+.+
T Consensus 342 ~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~ 421 (473)
T KOG1347|consen 342 LGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGF 421 (473)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCchhHhhHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 045659 426 VVHLRGKGLWTGIVVGSAVQSTMLCLITCFTNWNKQ 461 (461)
Q Consensus 426 ~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~w~~~ 461 (461)
..++|..|.|.+...+.............+.+|++|
T Consensus 422 ~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~ 457 (473)
T KOG1347|consen 422 FTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQ 457 (473)
T ss_pred EEecCceEEEeehHHHHHHHHHHHHHheeeccHHHH
Confidence 889999999999999988888888888888999875
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=3.3e-31 Score=255.90 Aligned_cols=386 Identities=13% Similarity=0.113 Sum_probs=336.4
Q ss_pred cC-hHHHHHHHHHHHHHHHHHHHHH-HhhHhhHHHHHHHhhCCcchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Q 045659 60 LG-QLQLASVAIATSVTNVVGFSFL-SGLAGGLETLCGQAFGAQQYQRLGIHTNSAIISLIAICPIICIP-WIFMNKLLL 136 (461)
Q Consensus 60 lg-~~~~~~~~~~~~i~~~~~~~~~-~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 136 (461)
+| .++.+++..+.++..++..... .+++++..|..++.. ++++|+.++..++...+....++.++++ +++++++++
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 3467799999999999833444 468999999999998 7888999999999998888888888887 899999999
Q ss_pred Hc--CCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHHHHHHhhhhHHHHHHHHhhcCCC---cchhH
Q 045659 137 TL--GQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILCFHIPVCWILVFKLKLG---ILGAA 211 (461)
Q Consensus 137 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g---~~g~~ 211 (461)
.+ +.|++..+.+.+.+++..+..++.++..+..+++|+++|+..+....+..++..++...++. ...| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~--~~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLS--NSWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHH
Confidence 88 56788999999999999999999999999999999999999999888887776555443333 2566 88899
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccchhccCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCCchhhHHHHH
Q 045659 212 AAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPNPRLETSGL 291 (461)
Q Consensus 212 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 291 (461)
++..++..++.++.....+|.... .+... +.+.+..|++++...|..+.+...++...+++.+.+.++ +.+++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l 236 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFR-FRPKF--DWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCc-ccccC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHH
Confidence 999999999998888887754432 11111 112356899999999999999999999999999999988 5599999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc----CcHH
Q 045659 292 SICLAITTLHF-IIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYS----NDKQ 366 (461)
Q Consensus 292 ~~~~~i~~~~~-~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~ 366 (461)
+.+.++.+++. .+..+++++..|.+++...+||.++.++..+++.+....+.+|.++++..+++++++++. .|.|
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 99999999988 446799999999999999999999999999999999999999999999999999999874 3677
Q ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHHHHHhcCCchhHhhHHHHHHHHHHH
Q 045659 367 VVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQS 446 (461)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~ 446 (461)
..+....++.+++++.++.++...+.+.+++.||+|.+++.++... ++++.+++.+. +.+|..|+++++.++..+..
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~--~~~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLV--PFFGVAGLALATSLSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999987 89999998884 44799999999999999999
Q ss_pred HHHHHHHHhc
Q 045659 447 TMLCLITCFT 456 (461)
Q Consensus 447 ~~~~~~~~~~ 456 (461)
++..+.++|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 9998888776
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=7.3e-29 Score=234.89 Aligned_cols=421 Identities=13% Similarity=0.072 Sum_probs=353.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-cCh-HHHHHHHHHHHHHHHHHHHHHH-hhHhhHHHHHHHhhCCcchh
Q 045659 28 EFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGH-LGQ-LQLASVAIATSVTNVVGFSFLS-GLAGGLETLCGQAFGAQQYQ 104 (461)
Q Consensus 28 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~-~~~~~~~~~~~i~~~~~~~~~~-g~~~~~~~~~s~~~g~~~~~ 104 (461)
..++++|.+......++++.+.+++...+++. +|+ ...+++.++.++.+++--.... .++++..|...++..++++|
T Consensus 5 ~~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~ 84 (518)
T COG0728 5 SKMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEE 84 (518)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhh
Confidence 34567777788888889999999999999999 687 5678999999999988444433 36899999999998877777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHc-CC--ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcch
Q 045659 105 RLGIHTNSAIISLIAICPIICIP-WIFMNKLLLTL-GQ--DPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICP 180 (461)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 180 (461)
+.++..+........+.+.++++ .++++.+++.. .. |++....+....++..+..++.++.....+.+++.+|+..
T Consensus 85 ~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~ 164 (518)
T COG0728 85 AARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFI 164 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeech
Confidence 77777777776777777777777 77888888555 22 3344446888889999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcCcccchhccCCCHHHHHHHHHHHHHhhHH
Q 045659 181 MLITYFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPS 260 (461)
Q Consensus 181 ~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~ 260 (461)
+.+..+..++.-+.....+....+.-..+.++++.++-+.+.++.+..++|.+-..+....++ .+..|++.+...|.
T Consensus 165 ~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~---~~~lk~~~~~~~p~ 241 (518)
T COG0728 165 PAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFK---DPGLKRFLKLMLPA 241 (518)
T ss_pred hhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCC---chhHHHHHHHHHHH
Confidence 999988887776655554444322235688899999999999999999986653222211122 26789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 045659 261 ALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHF-IIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVA 339 (461)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~-~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (461)
.+.....+++..+++.+.+.+. +.+++.++.+.++.+++. .+..+++++..|.+|++..++|.++.++..+++.+.+
T Consensus 242 ~l~~sisQi~lli~~~iAS~l~--~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~ 319 (518)
T COG0728 242 LLGVSISQINLLIDTAIASFLA--EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLT 319 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence 9999999999999999999997 559999999999999999 6679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccc----CcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHh
Q 045659 340 TLEAVIASTILFSCRFIVGYAYS----NDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLV 415 (461)
Q Consensus 340 ~~~~~~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 415 (461)
+.+++|.++++.++++|+++++. .++++.....+.+..++++.++..+..++...+++.+|+|.++++++++. ++
T Consensus 320 lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~ 398 (518)
T COG0728 320 LLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VV 398 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HH
Confidence 99999999999999999999873 25566888899999999999999999999999999999999999999997 99
Q ss_pred hhhHHHHHHHhcCCchhHhhHHHHHHHHHHHHHHHHHHHhc
Q 045659 416 GLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCFT 456 (461)
Q Consensus 416 ~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 456 (461)
++.++..+ .+.+|..|++.++.++.++...+.++.++|+
T Consensus 399 n~~l~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 399 NILLNLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999766 4447899999999999999988888887775
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=100.00 E-value=6.3e-29 Score=245.67 Aligned_cols=398 Identities=11% Similarity=0.051 Sum_probs=322.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhhHH
Q 045659 29 FKKLSRIAAPMVGIFLFDYLLQVVSTMMVGH-LGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRLG 107 (461)
Q Consensus 29 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~ 107 (461)
.++..+.+.+..++++...+.+++...+++| +||+++|.++.+..+..+.......|++++.. |. +|.+ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~~--~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDIS--H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccCC--H
Confidence 4678888999999999999999999999999 69999999999999999986677788887643 21 1211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 045659 108 IHTNSAIISLIAICPIICIP-WIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYF 186 (461)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 186 (461)
+...+...+....+++..++ +.+.+++...++ +++. ...+++..+..++..+.....+.+++.++.+.....++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 33455666777777766665 555666555543 4443 34577777778888888889999999999999999888
Q ss_pred HHhhhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcCcccchhccCCCHHHHHHHHHHHHHhhHHHHHHHH
Q 045659 187 CILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLCL 266 (461)
Q Consensus 187 ~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~ 266 (461)
...+...++.+.+.. .++|..+..++..++..+..+......+ +++ ++++ +.+++..|++++++.|...++..
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~-~~~-~~~~----~~~~~~~k~ll~~~~~~~~~~~~ 222 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGR-KIY-RPAL----HFSLASVKPNLSFGAWQTAERII 222 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhc-ccC-Cccc----eecHHHHHHHHhhhHHHHHHHHH
Confidence 888887777766665 4789999999999998887665443332 221 1111 12356789999999999999999
Q ss_pred HHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 045659 267 RWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFII-PYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVI 345 (461)
Q Consensus 267 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (461)
..+....|+.+++.+. |++++|.|+.+.++.+.+... ...++++..|.+++. ++|.++.++..++..++...+++|
T Consensus 223 ~~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p 299 (492)
T PRK10459 223 NYLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFP 299 (492)
T ss_pred HHHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876 489999999999999876544 456788999999985 578899999999999999999999
Q ss_pred HHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHHHHH
Q 045659 346 ASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGVLGF 425 (461)
Q Consensus 346 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~ 425 (461)
+.+++.+++++++.++.+|+ ++.+...++++++..++..+..+....+++.||+|..++.++... ++.+|..+.+.
T Consensus 300 ~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~- 375 (492)
T PRK10459 300 LLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGG- 375 (492)
T ss_pred HHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHH-
Confidence 99999999999999988766 788999999999999999999999999999999999999998876 77778776664
Q ss_pred hcCCchhHhhHHHHHHHHHHHHHHHHHHHh
Q 045659 426 VVHLRGKGLWTGIVVGSAVQSTMLCLITCF 455 (461)
Q Consensus 426 ~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 455 (461)
..+|+.|+++++.+++.+......+..+|
T Consensus 376 -~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 376 -QLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred -hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34699999999999999988888777744
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.97 E-value=8.6e-27 Score=229.93 Aligned_cols=391 Identities=15% Similarity=0.123 Sum_probs=311.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhh
Q 045659 27 KEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGH-LGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQR 105 (461)
Q Consensus 27 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 105 (461)
+..+++.|.+.....+++...+.+++....++| +|++++|.++.+.++..++......|++.+..+.++++.++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 467889999999999999999999999999999 7999999999999999999677779999999999999876655555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHH
Q 045659 106 LGIH-TNSAIISLIAICPIICIPWIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLIT 184 (461)
Q Consensus 106 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 184 (461)
.+.. ...........+.+......+..+. ++ .....+++.....++........+.+|+.++++.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 5554 4444444444444433332222221 12 23345777888999999999999999999999999888
Q ss_pred HHHHhhhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhc-CcccchhccCCCHHHHHHHHHHHHHhhHHHHH
Q 045659 185 YFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMY-SSSCKDTRAKLSKEAFLAIKQFFAFGLPSALM 263 (461)
Q Consensus 185 ~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~ 263 (461)
.+.+ ..-....+.+. +.......++...+..........+..+ +++..+.. .+ ..++..|+.+++++|...+
T Consensus 153 ~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~~~~p~~~~ 225 (480)
T COG2244 153 IVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPI--LR-FSLALLKELLRFGLPLLLS 225 (480)
T ss_pred HHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--cC-chhHHHHHHHHHhhHHHHH
Confidence 4444 11122222222 1234455666666666655555555432 22111111 11 1368899999999999999
Q ss_pred HHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHH
Q 045659 264 LCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEA 343 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (461)
+....+....|..+++++. |++++|.|+.+.++......+..+++.+..|.+++...++|.++.++..+++.++...++
T Consensus 226 ~~~~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (480)
T COG2244 226 SLLNFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLIS 304 (480)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886 489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHHH
Q 045659 344 VIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGVL 423 (461)
Q Consensus 344 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l 423 (461)
+|..+++.++++++..++.+++ +..+...+.+++++.++.++.......+++.|+++..++.+..+. +.++.+++.+
T Consensus 305 ~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~l 381 (480)
T COG2244 305 IPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLL 381 (480)
T ss_pred HHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHH
Confidence 9999999999999999998876 556899999999999999999999999999999999999999997 8888888888
Q ss_pred HHhcCCchhHhhHHHHH
Q 045659 424 GFVVHLRGKGLWTGIVV 440 (461)
Q Consensus 424 ~~~~~~g~~g~~~a~~~ 440 (461)
. +.+|..|+..++..
T Consensus 382 i--~~~g~~g~~~a~~~ 396 (480)
T COG2244 382 I--PRFGLIGAAIATAS 396 (480)
T ss_pred H--HhhhhhhHHHHHHH
Confidence 4 44688998888833
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.90 E-value=7.5e-22 Score=192.53 Aligned_cols=204 Identities=17% Similarity=0.206 Sum_probs=190.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhh
Q 045659 26 VKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQR 105 (461)
Q Consensus 26 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 105 (461)
++..|++++.++|..++++.+.....+|+.+++++|++++++++++.++..+. ..+..|++.+.++.++|++|+||+|+
T Consensus 232 ~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~~~~ 310 (464)
T PRK00187 232 RAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGRLLE 310 (464)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 37899999999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC--Ch---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcc
Q 045659 106 LGIHTNSAIISLIAICPIICIP-WIFMNKLLLTLGQ--DP---LVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLIC 179 (461)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (461)
+++..+.++.++.+.+++.+++ +++.+++.+.+.. ++ |+.+.+..|+++.+++.++..++.+..+.+|+.||++
T Consensus 311 ~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~ 390 (464)
T PRK00187 311 ARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDAR 390 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccH
Confidence 9999999999999999988886 8899999999953 43 6888999999999999999999999999999999999
Q ss_pred hHHHHHHHHh-hhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 045659 180 PMLITYFCIL-CFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVM 230 (461)
Q Consensus 180 ~~~~~~~~~~-~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 230 (461)
.++..++.+. ++++++++++.+.+++|+.|+++++.+++.+..+......+
T Consensus 391 ~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~ 442 (464)
T PRK00187 391 TTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFE 442 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 69999999999877899999999999999998877766554
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.90 E-value=2.9e-21 Score=186.68 Aligned_cols=207 Identities=14% Similarity=0.090 Sum_probs=192.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChH
Q 045659 247 FLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPE 326 (461)
Q Consensus 247 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~ 326 (461)
+++.|++++.++|..++++...+...+|..++++++ |++++++.+++.++..+...+..+++.+..+.++|++|+||.|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~-g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLD-SPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 356789999999999999999999999999999985 3778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHH
Q 045659 327 AARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGAC 406 (461)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 406 (461)
++++..+++..+++.++++.......+.+++..+++.|+|+.+.+.+++++..++.++..+.....+.+++.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999988898999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHhcCCchhHhhHHHHHHHHHHHHHHHHHHHh
Q 045659 407 INFVAFYLVGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCF 455 (461)
Q Consensus 407 ~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 455 (461)
.++++. ++++++++++.+.+++|+.|+++|+.+++.+..++..++++|
T Consensus 164 ~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997 899999999987778999999999999999988776555543
No 18
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.90 E-value=4e-21 Score=185.70 Aligned_cols=209 Identities=18% Similarity=0.187 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCh
Q 045659 246 AFLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNP 325 (461)
Q Consensus 246 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~ 325 (461)
.++..|+++++++|..++++.......+|+.++++++ ++++++-++++++..+...+..+++.+..+.++|.+|+||.
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 3567899999999999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhH
Q 045659 326 EAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGA 405 (461)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 405 (461)
+++++..+.+...++.++++..+....+++++..++++++|+.+.+.+++++..++.++..+.....+.+++.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHh-cC-CchhHhhHHHHHHHHHHHHHHHHHHHhcC
Q 045659 406 CINFVAFYLVGLPVGGVLGFV-VH-LRGKGLWTGIVVGSAVQSTMLCLITCFTN 457 (461)
Q Consensus 406 ~~~~~~~~~~~i~l~~~l~~~-~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 457 (461)
++++++. +.|+.+++++.+. ++ +|+.|+++|+.+++.+..++..++..|++
T Consensus 170 ~~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 170 YILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998 9999999999876 45 99999999999999999998877777654
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.89 E-value=4.7e-21 Score=186.99 Aligned_cols=205 Identities=15% Similarity=0.127 Sum_probs=190.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChH
Q 045659 247 FLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPE 326 (461)
Q Consensus 247 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~ 326 (461)
-+..|+++++++|.++++........+|+.++++++ ++++++++++.++..+...+..+++++..+.++|++|+||.|
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 355899999999999999999999999999999987 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc--CcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchh
Q 045659 327 AARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYS--NDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIG 404 (461)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 404 (461)
++++..+.+..+++.++++.+++.+++++++..++. .|+|+.+.+.+++++..++.++..+.....+.+++.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 999999999999999999999999999999999995 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHh----cCCchhHhhHHHHHHHHHHHHHHHHHHH
Q 045659 405 ACINFVAFYLVGLPVGGVLGFV----VHLRGKGLWTGIVVGSAVQSTMLCLITC 454 (461)
Q Consensus 405 ~~~~~~~~~~~~i~l~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 454 (461)
+++++... ++++++.+.+.+. +++|+.|+++|+.+++.+..++..+.+.
T Consensus 183 ~~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 183 LLINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999865 8999999988653 3789999999999999998877655443
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.89 E-value=4.8e-21 Score=186.55 Aligned_cols=207 Identities=12% Similarity=0.076 Sum_probs=194.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChH
Q 045659 247 FLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPE 326 (461)
Q Consensus 247 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~ 326 (461)
++..|++++.++|..++++...+...+|+.+++++. |++++++++++.++..+...+..+++.+..+.++|++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~-g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYV-GAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 456799999999999999999999999999999963 2889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHH
Q 045659 327 AARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGAC 406 (461)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 406 (461)
++++..+++..+++.++++.++++.++++++..+++.|+|+.+.+.+++++..++.++..+.....+.+++.||++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHhcCCchhHhhHHHHHHHHHHHHHHHHHHHh
Q 045659 407 INFVAFYLVGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCF 455 (461)
Q Consensus 407 ~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 455 (461)
.++.+. ++++++++++.+.+++|+.|+++++.+++.+..++..+++++
T Consensus 167 ~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~ 214 (453)
T PRK09575 167 LMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFS 214 (453)
T ss_pred HHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999986 899999999987778999999999999999998886666554
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.89 E-value=5.7e-21 Score=186.95 Aligned_cols=206 Identities=18% Similarity=0.203 Sum_probs=193.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhh
Q 045659 26 VKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQR 105 (461)
Q Consensus 26 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 105 (461)
++..|++++.++|..+++..+.....++..+++++|++++++++++.++.++. ..+..|++.+.++.++|++|+||+++
T Consensus 235 ~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~~~~ 313 (456)
T PRK01766 235 WAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGRTLD 313 (456)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 36899999999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHH
Q 045659 106 LGIHTNSAIISLIAICPIICIP-WIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLIT 184 (461)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 184 (461)
+++..+.++.++..++++.+++ +.+.+++.+++..|+|+.+.+..|+++..+..++.+++....+.+|+.||++.++..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~ 393 (456)
T PRK01766 314 ARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFI 393 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHH
Confidence 9999999999999999988876 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcC
Q 045659 185 YFCIL-CFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYS 232 (461)
Q Consensus 185 ~~~~~-~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 232 (461)
++.+. ++++++.+++.+.+++|..|+++++.+++.+..++..++.++.
T Consensus 394 ~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 442 (456)
T PRK01766 394 TFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL 442 (456)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 5889998888877789999999999999999998887777643
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.85 E-value=1.8e-18 Score=171.92 Aligned_cols=230 Identities=13% Similarity=0.060 Sum_probs=197.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhhH
Q 045659 27 KEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRL 106 (461)
Q Consensus 27 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~ 106 (461)
+..|++++.+.|..+++....+...+|+.+.+++|++++++++.+.++..+....+..+++++..|.++++.++||+|+.
T Consensus 220 ~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~ 299 (502)
T TIGR01695 220 PGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNEL 299 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 68899999999999999999999999998866689999999999999998873456789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchH
Q 045659 107 GIHTNSAIISLIAICPIICIP-WIFMNKLLLTLGQ----DPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPM 181 (461)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 181 (461)
++..+++......++++.+++ ..++++++.++.+ |+|..+.+..++++.++..++..+.....+.+++.||+|.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~ 379 (502)
T TIGR01695 300 RDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTP 379 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccC
Confidence 999999999999999999987 8899999998865 56778889999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcCcccchhccCCCHHHHHHHHHHHHHhhHHH
Q 045659 182 LITYFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSA 261 (461)
Q Consensus 182 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~ 261 (461)
+..+....+++++++++++. .+|..|+++++.+++.+...+..++.+|+.... ...+..|++.|......
T Consensus 380 ~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~as~ 449 (502)
T TIGR01695 380 FINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRRLKGI--------LPFGVLKVLAKLVIASA 449 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcC--------CchHHHHHHHHHHHHHH
Confidence 99999999999999988874 689999999999999999988877776432110 11344555666555555
Q ss_pred HHHHH
Q 045659 262 LMLCL 266 (461)
Q Consensus 262 ~~~~~ 266 (461)
++...
T Consensus 450 ~m~~~ 454 (502)
T TIGR01695 450 IIGGV 454 (502)
T ss_pred HHHHH
Confidence 44433
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.82 E-value=4.5e-17 Score=148.52 Aligned_cols=271 Identities=13% Similarity=0.151 Sum_probs=208.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhhHHHHHH
Q 045659 33 SRIAAPMVGIFLFDYLLQVVSTMMVGH-LGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRLGIHTN 111 (461)
Q Consensus 33 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~ 111 (461)
.|.+.....+++...+.+++...+++| +|+|++|.++...++..+.......|++++..+.++++..+ +++.++...
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 577888899999999999999999999 79999999999999999985667999999999998886432 344555555
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHHHHHHhhh
Q 045659 112 SAIISLIAICPIICIPWIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILCF 191 (461)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 191 (461)
.......+.+++........ ..+. +++... .+........++........+++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~----~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIA----SFFG-NPSLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcC-CchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444444333332221 1333 333221 122222222257788888999999999999999999999988
Q ss_pred hHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcCcccchhccCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 045659 192 HIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLCLRWWSM 271 (461)
Q Consensus 192 ~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~ 271 (461)
..++...++.. +.+..+...+..++..+...+..++.+|+.+ . +....+++..|++++++.|..++++...+..
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR--P---RFSFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--c---cccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776666653 4458889999999999888888877765432 1 1122236789999999999999999999999
Q ss_pred HHHHHHHccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045659 272 EMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNEL 320 (461)
Q Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~ 320 (461)
..|..+++.+. |++++|.|+++.++......+..++.++..|.+++.+
T Consensus 226 ~~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 226 QIDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred HhHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999887 5999999999999999999999999999999999863
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.80 E-value=2.6e-17 Score=155.32 Aligned_cols=194 Identities=19% Similarity=0.170 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 045659 259 PSALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFV 338 (461)
Q Consensus 259 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 338 (461)
|.++++....+....++.++++++ ++++++|+.+.++..+...+..+++++..|.++++.|++|.|++++..+.+..+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 778899999999999999999987 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhhh
Q 045659 339 ATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLP 418 (461)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 418 (461)
....+++.+++++++++++..+++.|++..+.+.++++++++..++.++.......+++.||.+...+.++++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888889999999999999999999999999999999999999999987 78888
Q ss_pred HHHHHHH-hcC-CchhHhhHHHHHHHHHHHHHHHHHHHh
Q 045659 419 VGGVLGF-VVH-LRGKGLWTGIVVGSAVQSTMLCLITCF 455 (461)
Q Consensus 419 l~~~l~~-~~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~ 455 (461)
+.+.+.. .++ .|+.|+++++.+++++..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888865 455 679999999999999998887766664
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.80 E-value=1.9e-16 Score=153.34 Aligned_cols=206 Identities=13% Similarity=0.074 Sum_probs=192.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhhH
Q 045659 27 KEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRL 106 (461)
Q Consensus 27 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~ 106 (461)
+..|++++...|..++....++...+|+.+.+++++..+++++.+.++.++....+..++++...|..|+...+||.++.
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~ 274 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF 274 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 67999999999999999999999999999999999999999999999999986788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchH
Q 045659 107 GIHTNSAIISLIAICPIICIP-WIFMNKLLLTLG----QDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPM 181 (461)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 181 (461)
++.+++++.....+.+|.++. ..+++|+++.+. .|+|..+.....+++.+++.|+.++...+...+.+.+|+|.+
T Consensus 275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~ 354 (451)
T PF03023_consen 275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTP 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhH
Confidence 999999999999999999987 999999999773 477788889999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcCcc
Q 045659 182 LITYFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYSSS 234 (461)
Q Consensus 182 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 234 (461)
+..++.+.++|++++.++.. .+|..|.++++.++..+..+.....++|+.+
T Consensus 355 ~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 355 VRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999988875 7999999999999999999999888875543
No 26
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.78 E-value=5.5e-17 Score=160.74 Aligned_cols=201 Identities=16% Similarity=0.137 Sum_probs=175.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-cCh------H---HHHHH-HHHHHHHHHHHHHHHHhhHhhHHHHH
Q 045659 26 VKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGH-LGQ------L---QLASV-AIATSVTNVVGFSFLSGLAGGLETLC 94 (461)
Q Consensus 26 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~------~---~~~~~-~~~~~i~~~~~~~~~~g~~~~~~~~~ 94 (461)
++..|++++.+.|..++++...+...+|+.++++ +++ + .+|.+ +.+.++..+. ..+..+++++..|.+
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~~ 299 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPDI 299 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999987 322 1 23333 3556677777 788899999999999
Q ss_pred HHhhCCcchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 045659 95 GQAFGAQQYQRLGIHTNSAIISLIAICPIICIP-WIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQ 173 (461)
Q Consensus 95 s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 173 (461)
+++.|+||+|+.++..++...+...++++.++. ..++++++..+..+++ +.+++++.++..++..+.....+.++
T Consensus 300 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~ 375 (488)
T TIGR02900 300 SEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQ 375 (488)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998886 8889999998865433 56789999999999999999999999
Q ss_pred HcCCcchHHHHHHHHhhhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 045659 174 TQSLICPMLITYFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMY 231 (461)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 231 (461)
+.||+|.+++.++...+++++++++++..+++|..|+++++.+++.+......+..+|
T Consensus 376 ~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 376 GLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988875457899999999999999999888887764
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.77 E-value=1.1e-18 Score=145.65 Aligned_cols=162 Identities=21% Similarity=0.396 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 045659 259 PSALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFV 338 (461)
Q Consensus 259 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 338 (461)
|.+++++.....+.++..++++++ ++++++++++.++.++...+..+++++..+.++|++|++|.+++++..+++..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 889999999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhhh
Q 045659 339 ATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLP 418 (461)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 418 (461)
...++++.++...++++++..+|+.|+|+.+.+.+++++..+..++..+.....+++++.||++..++.++...|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 045659 419 VGGV 422 (461)
Q Consensus 419 l~~~ 422 (461)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9874
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.75 E-value=1.1e-18 Score=145.81 Aligned_cols=160 Identities=23% Similarity=0.357 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhhHHHHHHHHHHHH
Q 045659 38 PMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRLGIHTNSAIISL 117 (461)
Q Consensus 38 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 117 (461)
|..++++.+.+...+|+.+++++|++++++++++.++..+. ..+..|++++.++.++|++|++|+|+.++..+.++.++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHHHHHHh-hhhHHH
Q 045659 118 IAICPIICIP-WIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCIL-CFHIPV 195 (461)
Q Consensus 118 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~ 195 (461)
..++++.+++ ..+.+++.++++.|+|..+.+.+|+++..+..++..+.....+++++.||++.++..++.+. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999997 89999999999999999999999999999999999999999999999999999999999999 899998
Q ss_pred HHH
Q 045659 196 CWI 198 (461)
Q Consensus 196 ~~~ 198 (461)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.75 E-value=1.3e-14 Score=138.44 Aligned_cols=234 Identities=12% Similarity=0.060 Sum_probs=203.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhhH
Q 045659 27 KEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRL 106 (461)
Q Consensus 27 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~ 106 (461)
+..|++.+...|..++...+++...+|+.+.+.+.+...+.+.++.++.++..-.+..++++...|..|++..++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 68999999999999999999999999999999999999999999999999997799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchH
Q 045659 107 GIHTNSAIISLIAICPIICIP-WIFMNKLLLTLG----QDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPM 181 (461)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 181 (461)
++..+.++.++.++++|.++. ..+++|+++.+. .+++......+.+...+.+.++..+..++...+.+++|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999997 999999999773 466777788899999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcCcccchhccCCCHHHHHHHHHHHHHhhHHH
Q 045659 182 LITYFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSA 261 (461)
Q Consensus 182 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~ 261 (461)
+++.+++.++|+.+++.+.. .+|..|.++++.++.+++....++.++|+..... .+ .+...+ ..|..+-..
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~-~~-----~~~~~~-~~k~~l~~~ 459 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP-GR-----GWGLFL-ILKLLLASA 459 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cc-----hhhHHH-HHHHHHHHH
Confidence 99999999999999966664 7888999999999999999988888875543322 11 234344 455555555
Q ss_pred HHHHHHHH
Q 045659 262 LMLCLRWW 269 (461)
Q Consensus 262 ~~~~~~~~ 269 (461)
++....+.
T Consensus 460 i~~~~~~~ 467 (518)
T COG0728 460 IMAAALLA 467 (518)
T ss_pred HHHHHHHH
Confidence 55444443
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.72 E-value=3.4e-14 Score=140.78 Aligned_cols=199 Identities=15% Similarity=0.102 Sum_probs=173.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhh
Q 045659 27 KEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGH-LGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQR 105 (461)
Q Consensus 27 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 105 (461)
+..|++++++.|...+++...+...+|+.++++ +|++++|.|+.++++.+.....+...+++...|..++. ++|+++
T Consensus 204 ~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~ 281 (492)
T PRK10459 204 ASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEK 281 (492)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHH
Confidence 678999999999999999999999999999999 59999999999999998864556666778888999886 568888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHH
Q 045659 106 LGIHTNSAIISLIAICPIICIP-WIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLIT 184 (461)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 184 (461)
.++.+.+.......++++.++. ..++++++..+.+++ ...+...++++++...+..........+++.||+|.....
T Consensus 282 ~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~ 359 (492)
T PRK10459 282 LRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKW 359 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHH
Confidence 9999999999999999998886 888999998876543 4567899999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 045659 185 YFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMY 231 (461)
Q Consensus 185 ~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 231 (461)
++....+.++..+.+.. .+|+.|+++++.+++.+......++..|
T Consensus 360 ~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 360 NVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888877666553 6799999999999999988888777743
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.69 E-value=1.2e-14 Score=140.67 Aligned_cols=199 Identities=8% Similarity=-0.016 Sum_probs=170.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcch
Q 045659 25 FVKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGH-LGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQY 103 (461)
Q Consensus 25 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~ 103 (461)
+++..|++++++.|..+++....+....|+.++++ +|++++|.|+.+.++.+.+...+..+++++..|.++++ +|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~ 286 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK 286 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence 34789999999999999999999999999999975 89999999999999988443789999999999999995 567
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHH
Q 045659 104 QRLGIHTNSAIISLIAICPIICIP-WIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPML 182 (461)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (461)
|+.++..++.......++.+.+++ .+++++++.++.+++ .+.+.++++++++..++...+.......-+.++.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999998888888876 799999999987544 22367788888888888777777766677888888888
Q ss_pred HHHHHHhhhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 045659 183 ITYFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVM 230 (461)
Q Consensus 183 ~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 230 (461)
...+....++++++++++. .+|..|+++++.+++.+..+...+...
T Consensus 365 ~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 365 LAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999998885 689999999999999999988776654
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.68 E-value=2.7e-13 Score=121.94 Aligned_cols=247 Identities=15% Similarity=0.195 Sum_probs=179.7
Q ss_pred HHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 045659 48 LLQVVSTMMVGH-LGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRLGIHTNSAIISLIAICPIICI 126 (461)
Q Consensus 48 ~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (461)
..+++...+++| +|++++|.++....+..+.......|+.+.... . .++|+++.++..+.......+.+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888999 799999999999999999845557777776544 2 2345556666666665554444444433
Q ss_pred HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHHHHHHhhhhHHHHHHHHhhcCCC
Q 045659 127 PWIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILCFHIPVCWILVFKLKLG 206 (461)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g 206 (461)
+ ...+...+ .+++. ..++....+..+.........+.+++++|.+.....+.........+...+... +.+
T Consensus 77 ~---~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 147 (251)
T PF13440_consen 77 L---AILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLN 147 (251)
T ss_pred H---HHHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 2 11122233 33332 234556667778889999999999999999999999999988875555444442 448
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCcccchhccCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCCchhh
Q 045659 207 ILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPNPRL 286 (461)
Q Consensus 207 ~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~ 286 (461)
..+..++..++..+..++.....+++.+ .. + +.+..| ..+.+.|..+.+.........|..+++.+. |++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~ 217 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRRKLR--LS----F--KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPE 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccC--CC----c--hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHH
Confidence 8888888888888877666653332111 11 1 123334 799999999999999999999999999844 499
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 045659 287 ETSGLSICLAITTLHF-IIPYGIGAAASTRVSN 318 (461)
Q Consensus 287 ~~~~~~~~~~i~~~~~-~~~~~l~~~~~p~~~~ 318 (461)
++|.|+++.++...+. .+..++++...|.++|
T Consensus 218 ~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 218 AVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999888 8999999999999987
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.62 E-value=1.9e-13 Score=135.10 Aligned_cols=185 Identities=17% Similarity=0.215 Sum_probs=170.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhh
Q 045659 27 KEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGH-LGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQR 105 (461)
Q Consensus 27 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 105 (461)
+..|++++.+.|...++....+.+.+|+.++++ +|++++|.|+.+.++.... ..+...++.+..|.+++...++|+++
T Consensus 210 ~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~~~ 288 (480)
T COG2244 210 ALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDRKA 288 (480)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 789999999999999999999999999999999 6999999999999999988 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHH
Q 045659 106 LGIHTNSAIISLIAICPIICIP-WIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLIT 184 (461)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 184 (461)
.++..++........+++..++ ..+++|++..+.+++.. .+...+.+.++..++..+.......+++.|+.+.....
T Consensus 289 ~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 366 (480)
T COG2244 289 LKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLI 366 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHH
Confidence 9999999999999999999997 88999999988655432 26778899999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHhhcCCCcchhHHHHHHH
Q 045659 185 YFCILCFHIPVCWILVFKLKLGILGAAAAFSLS 217 (461)
Q Consensus 185 ~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~ 217 (461)
+..+.+.|++++++++. .+|..|++.++ .+
T Consensus 367 ~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~ 396 (480)
T COG2244 367 SLISALLNLILNLLLIP--RFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HH
Confidence 99999999999999985 78999999999 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.40 E-value=1.4e-09 Score=106.41 Aligned_cols=421 Identities=10% Similarity=0.019 Sum_probs=253.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHH-HHHHHHHHHhhHhhHHHHHHHhhCCcchhhHHHHH
Q 045659 33 SRIAAPMVGIFLFDYLLQVVSTMMVGH-LGQLQLASVAIATSVT-NVVGFSFLSGLAGGLETLCGQAFGAQQYQRLGIHT 110 (461)
Q Consensus 33 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~-~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~ 110 (461)
.+.+.-.++.++...+.+++-+.++-| ++|+.+|..++=.-+. +...+..-.++-.+.++.-.+...++|.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 345566788899999999988888888 7999999884433332 33336667777777665433332222333333433
Q ss_pred HHHHHHHHHHHHHHHHHHH--hHHHH----HHHcCCC-hH---HHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHcC
Q 045659 111 NSAIISLIAICPIICIPWI--FMNKL----LLTLGQD-PL---VSHNAQKYSLCLIPALFANAILQPI----TRFMQTQS 176 (461)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~--~~~~l----~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~~~~~----~~~l~~~~ 176 (461)
+....+..+++++++.+.+ ...|. ..+...+ ++ ..+.....+.+...+.....+...+ +..+.-.-
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 3434444444443332211 11111 1111111 11 1222233334444444444444433 44444444
Q ss_pred CcchHHHHHHHHhhhhHHHHHHHHhhcCC--Cc-----ch-hHHHHHHHHHHHHHHHHH--HHhcCcc---cchhccCCC
Q 045659 177 LICPMLITYFCILCFHIPVCWILVFKLKL--GI-----LG-AAAAFSLSTWLNVVLVSP--YVMYSSS---CKDTRAKLS 243 (461)
Q Consensus 177 ~~~~~~~~~~~~~~~~i~~~~~li~~~~~--g~-----~g-~~~a~~i~~~~~~~~~~~--~~~~~~~---~~~~~~~~~ 243 (461)
|.+.-....+...+.+..+.+..... ++ +. .+ +.++...++......... ....... .+...++..
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~-~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~ 242 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERS-GYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKIS 242 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhc-ccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccc
Confidence 55555555555555555443333211 21 11 11 233444455444332221 1111111 111111111
Q ss_pred H---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcc--CCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 045659 244 K---EAFLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGF--LPNPRLETSGLSICLAITTLHF-IIPYGIGAAASTRVS 317 (461)
Q Consensus 244 ~---~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~i~~~~~-~~~~~l~~~~~p~~~ 317 (461)
. .+...-+++.+.....+.+++.-.+-..-|.+++.. +.+ .++-|.|+++++..++.. .+...+-.+.....+
T Consensus 243 ~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fs 321 (549)
T PF04506_consen 243 SGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFS 321 (549)
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHH
Confidence 1 011124788899999999999999999999999988 653 889999999999987654 667788888888888
Q ss_pred hhhcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHH
Q 045659 318 NELGAGNP---------EAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLH 388 (461)
Q Consensus 318 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 388 (461)
+...+++. ++..+......+....+++.+...-...++.+..++.+++-....+...++.++...++.+++
T Consensus 322 k~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~N 401 (549)
T PF04506_consen 322 KLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAIN 401 (549)
T ss_pred HHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHc
Confidence 88765433 345566667777777777777666677777777777665533345688999999999999999
Q ss_pred HHHHHHHhhcCccchhHHHHHHHH--HHhhhhHHHHHHHhcCCchhHhhHHHHHHHHHHHHHHHHHHHhc
Q 045659 389 AVFQGVSRGCGWQHIGACINFVAF--YLVGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCFT 456 (461)
Q Consensus 389 ~~~~~~l~~~g~~~~~~~~~~~~~--~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 456 (461)
.+.....++....+.....+-... -++-+..++++... ++|..|..+|..+.+....+.+..+.+|.
T Consensus 402 Gi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 402 GITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred cHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988776655443322 14455666777655 68999999999999999999888877763
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.31 E-value=2.3e-10 Score=110.33 Aligned_cols=205 Identities=15% Similarity=0.088 Sum_probs=187.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcCCCh
Q 045659 247 FLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTL-HFIIPYGIGAAASTRVSNELGAGNP 325 (461)
Q Consensus 247 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~-~~~~~~~l~~~~~p~~~~~~~~~~~ 325 (461)
..+.|++.+++.|..+.....+....++..+++++| +.+.++.++++...+. -+.+..++..+..|.++|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 678899999999999999999999999999999998 5699999999887765 5567789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhH
Q 045659 326 EAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGA 405 (461)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 405 (461)
+.......++........+|.+ .++.+.+++...+..|+++...+..+.++.....+...........+++.++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~-~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPIS-LLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHH-HHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 9999999999988888888875 566777999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHhcCCchhHhhHHHHHHHHHHHHHHHHHHHh
Q 045659 406 CINFVAFYLVGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCF 455 (461)
Q Consensus 406 ~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 455 (461)
++..... .+++++.+++.+.+++|..|+..+..+++.........+...
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~ 229 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVL 229 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhee
Confidence 9999987 999999999999999999999999999999998877666554
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=4.2e-07 Score=83.42 Aligned_cols=415 Identities=11% Similarity=-0.038 Sum_probs=236.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHH-HHHHHHHhhHhhHHHHHHHhhCCcchh
Q 045659 27 KEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGH-LGQLQLASVAIATSVTNV-VGFSFLSGLAGGLETLCGQAFGAQQYQ 104 (461)
Q Consensus 27 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~-~~~~~~~g~~~~~~~~~s~~~g~~~~~ 104 (461)
+......+.+...+..+++..+.+++-+..+-| ++++.+|..++-..+..= ..+..--++..+..+.=++. +++.+
T Consensus 5 ~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~--~d~~t 82 (530)
T KOG2864|consen 5 SVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEP--ADTWT 82 (530)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCC--CccHH
Confidence 345566677777788888888888877777766 799999988765444331 11344444444433322221 12344
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHH
Q 045659 105 RLGIHTNSAIISLIAICPIICIPWIFMNKLLLTLGQDPL-VSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLI 183 (461)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 183 (461)
+..+..+.+..++.+.++...-+++.-.... |+. ..+.-..-+.+...+.....+...+.-..|...+.+.-..
T Consensus 83 e~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~-----d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i 157 (530)
T KOG2864|consen 83 EFINLLWLSVPLQTAINVACIYFWLGFLSSS-----DEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAI 157 (530)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHhhcc-----chhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 5666666666666666665554422111111 111 1111111223333334434444444444455555555555
Q ss_pred HHHHHhhhhHHHHH-HHHhhc-CCCcchhHHHHHHHHHHHHHHHHHHHhcCcccch----------hcc----C--CCHH
Q 045659 184 TYFCILCFHIPVCW-ILVFKL-KLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKD----------TRA----K--LSKE 245 (461)
Q Consensus 184 ~~~~~~~~~i~~~~-~li~~~-~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~----------~~~----~--~~~~ 245 (461)
..-...++.-++.+ +++.++ ..++.--++|.....+.-.+...++..+.++..+ ..+ + ....
T Consensus 158 ~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ff 237 (530)
T KOG2864|consen 158 AEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFF 237 (530)
T ss_pred HhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccccc
Confidence 55555555523222 222222 3344445555555554444423333332222000 000 0 0112
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCC-chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcCC
Q 045659 246 AFLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLP-NPRLETSGLSICLAITTLHF-IIPYGIGAAASTRVSNELGAG 323 (461)
Q Consensus 246 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~i~~~~~-~~~~~l~~~~~p~~~~~~~~~ 323 (461)
+ ++..+.-....-+...-.+...-+..+.+... .+-.+-|.|.++++..++.. .+...+-.......+|...++
T Consensus 238 d----~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~ 313 (530)
T KOG2864|consen 238 D----NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRD 313 (530)
T ss_pred c----HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhcc
Confidence 2 33444444445555555555555555544211 01336689999999876554 667888888888899988888
Q ss_pred ChHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCc
Q 045659 324 NPEAARRAAW---SAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGW 400 (461)
Q Consensus 324 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~ 400 (461)
+.|+.++... ...+....+++.....-...++.+..++++++-.-..+...++++++..++.+++.+..+...+.+.
T Consensus 314 ~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t 393 (530)
T KOG2864|consen 314 NQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVAT 393 (530)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhcc
Confidence 7777766544 4444455555555555555566777777665433334568999999999999999999999999887
Q ss_pred cchhHHH---HHHHHHHhhhhHHHHHHHhcCCchhHhhHHHHHHHHHHHHHHHHHHHh
Q 045659 401 QHIGACI---NFVAFYLVGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCF 455 (461)
Q Consensus 401 ~~~~~~~---~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 455 (461)
.+..-.- ..... ++-+.+++++...+ |..|...|..+.+.+.-+....+.++
T Consensus 394 ~~qi~~~n~~mlafS-viflilsylL~~~~--~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 394 SRQIDKHNKFMLAFS-VIFLILSYLLIRWF--GLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HHHHHhcccchhHHH-HHHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7655442 23333 56677888887774 88999999999988887777655554
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.93 E-value=6.1e-06 Score=72.75 Aligned_cols=266 Identities=16% Similarity=0.072 Sum_probs=166.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-c-Ch-HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcch
Q 045659 27 KEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGH-L-GQ-LQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQY 103 (461)
Q Consensus 27 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-l-g~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~ 103 (461)
....++.++-+|..+++....+...+-+.-++| - .+ +.+++|+++..+.-++ ..+...+-+....++ ++++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cchh
Confidence 356789999999999999999999999999988 4 33 5599999999999998 777777776655444 3333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-H-HhHHHHH-HHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcch
Q 045659 104 QRLGIHTNSAIISLIAICPIICIP-W-IFMNKLL-LTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICP 180 (461)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 180 (461)
++ ++........+.+.+.+..++ + .+...++ ..++.++++.+.+...+.++....++.++....+|++--.+++..
T Consensus 82 sr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 32 222222222222222221222 1 2233333 345779999999999999999999999999999998886677776
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhcCCC----cchhHHHHHHHHHHHHH-HHHHHHhcCcccchhccCCCHHHHHHHHHHHH
Q 045659 181 MLITYFCILCFHIPVCWILVFKLKLG----ILGAAAAFSLSTWLNVV-LVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFA 255 (461)
Q Consensus 181 ~~~~~~~~~~~~i~~~~~li~~~~~g----~~g~~~a~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 255 (461)
....++...+..+++..+++.. +.. +.--..+...+..+.+- ++..+...-+...+......+.+...++++++
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~ 239 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLK 239 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHH
Confidence 6666666555555544445432 111 11112333333322221 11222211122222222222233567899999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcc-CCch---hhHHHHHHHHHHHHHH
Q 045659 256 FGLPSALMLCLRWWSMEMLILSSGF-LPNP---RLETSGLSICLAITTL 300 (461)
Q Consensus 256 ~~~p~~~~~~~~~~~~~~~~~~~~~-~~~g---~~~~~~~~~~~~i~~~ 300 (461)
+.+|.+........+-.+.+.++++ ++.+ ++++++..+.+...-.
T Consensus 240 F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~ 288 (345)
T PF07260_consen 240 FWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHM 288 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcC
Confidence 9999999999999999999999998 4422 2556665554444333
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.58 E-value=9.6e-06 Score=79.82 Aligned_cols=202 Identities=11% Similarity=0.053 Sum_probs=165.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhc--c-ChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcch---
Q 045659 30 KKLSRIAAPMVGIFLFDYLLQVVSTMMVGH--L-GQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQY--- 103 (461)
Q Consensus 30 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~--l-g~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~--- 103 (461)
+++.+.......+++.-.+.+--|..++.. + ..++.|.|++++++-+++.=.+...+.-+.-...++...+++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~ 332 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence 678889999999999999999999999999 5 8899999999999999987788888888888888888765433
Q ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Q 045659 104 ------QRLGIHTNSAIISLIAICPIICIP-WIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQS 176 (461)
Q Consensus 104 ------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 176 (461)
++..+.+...+.+...+++++..+ ...++.++.++.++....+.+...+++.+..+|+.+++.+..++.++..
T Consensus 333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a 412 (549)
T PF04506_consen 333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVA 412 (549)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhC
Confidence 345667777788888888877776 7788888888866555555667889999999999999999999999887
Q ss_pred CcchHHHH---HHHHhhhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcC
Q 045659 177 LICPMLIT---YFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYS 232 (461)
Q Consensus 177 ~~~~~~~~---~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 232 (461)
..+..... .....++.+..++++... ++|..|..+|.++.......++..+.+|.
T Consensus 413 ~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 413 SESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65554443 445555667778888865 78999999999999999999998888643
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.49 E-value=1.9e-05 Score=64.25 Aligned_cols=79 Identities=24% Similarity=0.238 Sum_probs=73.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHHHHHHhhhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 045659 152 SLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMY 231 (461)
Q Consensus 152 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 231 (461)
+++.++..++..+.....+.+++.||+|..+..++.+.++|++++++++ +++|..|+++++.+++.+......+..+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999999997 48999999999999999999888888875
Q ss_pred C
Q 045659 232 S 232 (461)
Q Consensus 232 ~ 232 (461)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 4
No 40
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.24 E-value=8.4e-06 Score=66.33 Aligned_cols=79 Identities=13% Similarity=0.128 Sum_probs=73.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHHHHHhcCCchhHhhHHHHHHHHHHHHHHHHHHH
Q 045659 375 TPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITC 454 (461)
Q Consensus 375 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 454 (461)
+++++++.++.++....++.+++.||+|..++.+..+. ++++++++.+ .+++|..|+++++.+++.....+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999998 9999999999 55579999999999999999999988888
Q ss_pred hc
Q 045659 455 FT 456 (461)
Q Consensus 455 ~~ 456 (461)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 85
No 41
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.19 E-value=0.00067 Score=61.45 Aligned_cols=181 Identities=19% Similarity=0.127 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 045659 260 SALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFII-PYGIGAAASTRVSNELGAGNPEAARRAAWSAVFV 338 (461)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 338 (461)
....+....+.......++.+.. |+++.|.|+.+..+.++...+ ..++.++....+++..++ .++.++........
T Consensus 8 ~~~~~~~~~~~~~~~~~il~r~l-~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~~~~ 84 (273)
T PF01943_consen 8 LFLSNILSALIGFITIPILARYL-GPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSSVLFL 84 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHH
Confidence 34444444444444444444433 399999999999998888766 578888888777776433 23333333333332
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHH-HHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhh
Q 045659 339 ATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSI-ILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGL 417 (461)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 417 (461)
.... ..+....... ...+..++ . + .. ..++.... ++..........+++.++.+.....++... +..+
T Consensus 85 ~~~~-~~i~~~~~~~----~~~~~~~~-~-~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 153 (273)
T PF01943_consen 85 LLIF-SLIFLLILLI----ASFFGNPS-L-S--LI-LIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS-LLSL 153 (273)
T ss_pred HHHH-HHHHHHHHHH----HHHcCCch-H-H--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 2222 2222222222 22333322 1 1 11 22222222 578888889999999999999999998887 5555
Q ss_pred hHHHHHHHhcCCchhHhhHHHHHHHHHHHHHHHHHHHh
Q 045659 418 PVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCF 455 (461)
Q Consensus 418 ~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 455 (461)
.+...+... +.+..+...+..++..+..++..+..+|
T Consensus 154 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 154 LLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554333 2358899999999999988877777764
No 42
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=0.00016 Score=66.95 Aligned_cols=200 Identities=10% Similarity=0.032 Sum_probs=151.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhhH
Q 045659 30 KKLSRIAAPMVGIFLFDYLLQVVSTMMVGH---LGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRL 106 (461)
Q Consensus 30 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~ 106 (461)
++..+.......+.+.-.+.+=-|..+++- ++-++-|.|....+.-++..=.+...+.-....+.+|...++++|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 455556666666777777777778888873 36667888999988888876777777888888888887776655544
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHH
Q 045659 107 ---GIHTNSAIISLIAICPIICIP-WIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPML 182 (461)
Q Consensus 107 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (461)
.++..+.+.+...++++...+ ...+++++.+++++......+...+++.+..+|+.+++.+..++..+....+..-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 456666777777778777665 7778888888876655555566789999999999999999999998877544433
Q ss_pred ---HHHHHHhhhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 045659 183 ---ITYFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMY 231 (461)
Q Consensus 183 ---~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 231 (461)
....+..+..++.+++++- .+|..|..+|.++...+..+....+.++
T Consensus 399 ~~n~~mlafSviflilsylL~~--~~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIR--WFGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666677888898886 5788999999999988888888777764
No 43
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.96 E-value=0.0047 Score=55.17 Aligned_cols=163 Identities=16% Similarity=0.208 Sum_probs=105.4
Q ss_pred HHHHccCCchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045659 275 ILSSGFLPNPRLETSGLSICLAITTLHFIIP-YGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVIASTILFSC 353 (461)
Q Consensus 275 ~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (461)
..++.+.- |+++.|.|+....+..+...+. .++.+...- ..++|.++.++..+..............+.
T Consensus 8 ~~~lar~l-~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 77 (251)
T PF13440_consen 8 LILLARYL-GPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL---- 77 (251)
T ss_pred HHHHHHHC-CHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 33444433 3999999999999988877764 444433322 234666777777666655544444443333
Q ss_pred hhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHHHHHhcCCchhH
Q 045659 354 RFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGVLGFVVHLRGKG 433 (461)
Q Consensus 354 ~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g 433 (461)
...+...+ ++++ ....+....+..++..........+++.+|.+.......... +..+.+...+. ..+.+..+
T Consensus 78 ~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~ 150 (251)
T PF13440_consen 78 AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLL-YLGLNLWS 150 (251)
T ss_pred HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHH-HHHhhHHH
Confidence 22222233 3332 234566677788888999999999999999999999998887 44433333332 22348888
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 045659 434 LWTGIVVGSAVQSTMLCLITC 454 (461)
Q Consensus 434 ~~~a~~~~~~~~~~~~~~~~~ 454 (461)
..++..++.++..+......+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 151 ILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999888776655444
No 44
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.63 E-value=0.049 Score=49.73 Aligned_cols=345 Identities=6% Similarity=-0.006 Sum_probs=192.9
Q ss_pred HHHHHHHhhHhhHHHHHHHhhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 045659 78 VGFSFLSGLAGGLETLCGQAFGAQQYQRLGIHTNSAIISLIAICPIICIPWIFMNKLLLTLGQDPLVSHNAQKYSLCLIP 157 (461)
Q Consensus 78 ~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 157 (461)
++..+..|+....++++|...=+||++++.........+....+..++... -...++..... =...+.
T Consensus 72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~v-------f~~~~~~si~y-----k~l~~~ 139 (467)
T COG4267 72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIV-------FFVNNQYSIVY-----KILACA 139 (467)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh-------hhhcCchhHHH-----HHHHHH
Confidence 346778888889999999988777777776655555555544444444221 11122222211 112223
Q ss_pred hHHHHHHHHHHHHHHHHcCCcchHHHHHHHHhhhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcCcccch
Q 045659 158 ALFANAILQPITRFMQTQSLICPMLITYFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKD 237 (461)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~ 237 (461)
........-+...++.+.++.+.....-.++..+...+..++- +.++.|..++..++..........+..|.-+-+.
T Consensus 140 ~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~ 216 (467)
T COG4267 140 LFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYFKSSR 216 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhccccc
Confidence 3333444455566778888888888888888888888877766 4688999999999988877776666654322111
Q ss_pred h-ccCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCCchhhHHHHH------HHHHHHHHHHHHH-----H
Q 045659 238 T-RAKLSKEAFLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPNPRLETSGL------SICLAITTLHFII-----P 305 (461)
Q Consensus 238 ~-~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~i~~~~~~~-----~ 305 (461)
. -.+.... ++. -....+.....+++-..|+.+.=.-+.|.+-.+.+ .+..=...+...| .
T Consensus 217 ~i~FdFL~~-~~~-------y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~ 288 (467)
T COG4267 217 RIGFDFLLY-RRK-------YPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFL 288 (467)
T ss_pred ccceehhhh-hhc-------chHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheee
Confidence 1 1111111 111 11234445555666666666654333222222222 1111111111112 1
Q ss_pred HHHHHHHHHHHHhhhc----C-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHH
Q 045659 306 YGIGAAASTRVSNELG----A-------GNPEAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAM 374 (461)
Q Consensus 306 ~~l~~~~~p~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 374 (461)
..+.+...+..-+.+. . ++.++.....++...-..-+-...++.++++++.+...++-++ ...++
T Consensus 289 i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~l 364 (467)
T COG4267 289 ISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDL 364 (467)
T ss_pred eeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHH
Confidence 2333444444333221 1 2334444455556666666777888999999999999886554 24566
Q ss_pred hHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHHHHHhcCCchhHhhHHHHHHHHHHHHHHHHHH
Q 045659 375 TPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLIT 453 (461)
Q Consensus 375 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~ 453 (461)
.++-.++.-+...-..+.++.--.++-+.....+..-. ..|-.+.++.... |..--..+..++..+...+.....
T Consensus 365 F~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fl-i~N~ilT~i~l~l---gp~~~g~gff~a~fl~vlv~~~~l 439 (467)
T COG4267 365 FYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFL-ISNGILTFIFLEL---GPGYYGVGFFLASFLYVLVAFKSL 439 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHhHHHHHHHHHh---CccceehHHHHHHHHHHHHHHhhh
Confidence 77777777777777777777767777777766666543 5565666655432 322222444555555555444433
No 45
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.41 E-value=0.088 Score=47.22 Aligned_cols=159 Identities=11% Similarity=0.023 Sum_probs=107.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcc-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCh
Q 045659 247 FLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGF-LPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNP 325 (461)
Q Consensus 247 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~ 325 (461)
.....++.++-.|..+++....+.-++.+.-+++ ..+..+.++.|+++..+.-++..+...+.+.....+.+ +.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hh
Confidence 4567899999999999999999999988888875 33223569999999999999998888877665555432 22
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhh-ccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccch
Q 045659 326 EAARRAAWSAVFVATLEAVI-ASTILFSCRFIVG-YAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHI 403 (461)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 403 (461)
+ -++........+...... ..+..-.++..+. .++.-|+++.+.+...+.++.+..+++++.....+++.=.+++..
T Consensus 82 s-rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 S-RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 2 222222222222222111 1122222333332 244558889999999999999999999999999999886666665
Q ss_pred hHHHHHHH
Q 045659 404 GACINFVA 411 (461)
Q Consensus 404 ~~~~~~~~ 411 (461)
...-++..
T Consensus 161 V~~aSI~~ 168 (345)
T PF07260_consen 161 VGSASIAD 168 (345)
T ss_pred eehHHHHH
Confidence 55555543
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=77.31 E-value=65 Score=30.33 Aligned_cols=137 Identities=15% Similarity=0.136 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHH
Q 045659 302 FIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLS 381 (461)
Q Consensus 302 ~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~ 381 (461)
..+..+++....-.+|..+=++|.++++....-+..+....+..++..++ +.+|+ .....+.+ .+..
T Consensus 74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf---------~~~~~--~si~yk~l--~~~~ 140 (467)
T COG4267 74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF---------FVNNQ--YSIVYKIL--ACAL 140 (467)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh---------hhcCc--hhHHHHHH--HHHH
Confidence 33445566666666666666677777777766666555555555443111 11222 23333333 3455
Q ss_pred HHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHHHHHhcCCchhHhhHHHHHHHHHHHHHHHHHHHh
Q 045659 382 IILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCF 455 (461)
Q Consensus 382 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 455 (461)
.+..+........+.+++|.+...+.-.++. ++...++.++-.. ++.|.-.+.-++-.+...+......|
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~~~---~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFLKS---PIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh---HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6667888899999999999999998888876 7777777777544 89999999999988877766555544
No 47
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=64.95 E-value=46 Score=23.65 Aligned_cols=40 Identities=28% Similarity=0.285 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 045659 306 YGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVI 345 (461)
Q Consensus 306 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (461)
.-++......+.+.+.+||.+++++..+++-+++..-...
T Consensus 34 Gi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 34 GIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3344455667778888999999999999988887644333
No 48
>COG2060 KdpA K+-transporting ATPase, A chain [Inorganic ion transport and metabolism]
Probab=47.14 E-value=2.9e+02 Score=27.21 Aligned_cols=132 Identities=11% Similarity=-0.033 Sum_probs=65.9
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhcCcccchhccCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCCc
Q 045659 204 KLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPN 283 (461)
Q Consensus 204 ~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 283 (461)
+++....+.+....+.+..++.+..++..++.........- .++-...+.....+.+. -. .++.
T Consensus 59 em~wk~Y~~a~L~fN~~~~~~~f~ll~~Q~~LPlNP~~~~g-----------~s~~LafNTavSFvTNT---N~-Q~Ys- 122 (560)
T COG2060 59 EMSWKQYALALLAFNLLGGLLLFALLMLQGWLPLNPQGLPG-----------LSWDLAFNTAVSFVTNT---NW-QHYS- 122 (560)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHcccCCcCcccCCC-----------CCcchhhhhhheeeecC---ch-hhcc-
Confidence 47777888888888888888887777644443333221111 11222333333222211 11 1232
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045659 284 PRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVIASTILFS 352 (461)
Q Consensus 284 g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (461)
|+..++.++...-+.. ......+-+.++...+-|.+.+++-+..-+.+.+..|..+.+.+|+++++.+
T Consensus 123 GEt~lSyfSQm~~lt~-~mF~SAATG~Av~~A~iRgl~~~~~~~lGNF~~Dl~R~~~~vLLPls~v~ai 190 (560)
T COG2060 123 GETTLSYFSQMAGLTV-QNFVSAATGIAVAIALIRGLTRKSGKTLGNFWVDLTRSTLRVLLPLSLVVAI 190 (560)
T ss_pred CcchHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666654333322 1222334444555666666665544445555555555555555555555443
No 49
>PRK09546 zntB zinc transporter; Reviewed
Probab=43.34 E-value=64 Score=30.00 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHhc-CCc-------hhHhhHHHHHHHHHHHHHHHHHHHhcCC
Q 045659 406 CINFVAFYLVGLPVGGVLGFVV-HLR-------GKGLWTGIVVGSAVQSTMLCLITCFTNW 458 (461)
Q Consensus 406 ~~~~~~~~~~~i~l~~~l~~~~-~~g-------~~g~~~a~~~~~~~~~~~~~~~~~~~~w 458 (461)
..++++ ++.+|+.++.+.+. +++ -+| ++...+..++.++..++++||++|
T Consensus 266 ~Ltilt--~IflPlT~IaGiyGMNf~~mPel~~~~g-y~~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMA--MVFLPTTFLTGLFGVNLGGIPGGGWPFG-FSIFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHH--HHHHHHHHHHhhhccccCCCCCcCCcch-HHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444 46668777765541 111 123 333333444555566788888888
No 50
>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilise the complex. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolysing (energy providing) subunit [].; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0005886 plasma membrane
Probab=38.64 E-value=1.9e+02 Score=28.92 Aligned_cols=133 Identities=9% Similarity=-0.042 Sum_probs=65.4
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhcCcccchhccCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCCc
Q 045659 204 KLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPN 283 (461)
Q Consensus 204 ~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 283 (461)
+++....+.+..+-+.+..++.+..++...+.......... .++-.+++.......+ +-.- ++.
T Consensus 52 em~Wk~Ya~alL~fN~~~~l~~~~ll~~Q~~LPlNP~~~~~-----------~s~dlAfNTAiSFvTN---TNwQ-~Ys- 115 (552)
T PF03814_consen 52 EMSWKQYALALLAFNLIGFLLLYLLLRLQGWLPLNPQGFPG-----------MSPDLAFNTAISFVTN---TNWQ-HYS- 115 (552)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCCC-----------CCcchhhhhhhhhhcc---Cccc-ccC-
Confidence 56666777777777777776666655533322221111111 1122333333332221 1122 233
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045659 284 PRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVIASTILFSC 353 (461)
Q Consensus 284 g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (461)
|+..++.++...-+.. -.....+.+.++..-+-|.+.+++.+.+-+...+..|..+.+.+|++++..++
T Consensus 116 GEstlSylsQm~gLtv-qnFvSAAtGiAv~~AliRg~~~~~~~~iGNFwvDl~R~~l~vLLPlS~v~Ali 184 (552)
T PF03814_consen 116 GESTLSYLSQMAGLTV-QNFVSAATGIAVAIALIRGFARKETKTIGNFWVDLVRSTLRVLLPLSFVFALI 184 (552)
T ss_pred CcchHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666554332221 12233344555555566666666656666666666666666666666655443
No 51
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=37.99 E-value=3.7e+02 Score=25.75 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=28.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Q 045659 102 QYQRLGIHTNSAIISLIAICPIICIP-WIFMNKLLL 136 (461)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 136 (461)
++++.+++++.+...+.....+...+ ....-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55779999999999999998887775 666666665
No 52
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=36.22 E-value=1.2e+02 Score=27.97 Aligned_cols=52 Identities=13% Similarity=0.216 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHhc-CCc-------hhHhhHHHHHHHHHHHHHHHHHHHhcCC
Q 045659 404 GACINFVAFYLVGLPVGGVLGFVV-HLR-------GKGLWTGIVVGSAVQSTMLCLITCFTNW 458 (461)
Q Consensus 404 ~~~~~~~~~~~~~i~l~~~l~~~~-~~g-------~~g~~~a~~~~~~~~~~~~~~~~~~~~w 458 (461)
.-..++++ ++..|..++.+.+. ++. -+| ++......++..+..++++||++|
T Consensus 258 mk~LTvvt--~IflP~t~IaGiyGMNf~~mP~l~~~~g-y~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 258 MKILTVVS--TIFIPLTFIAGIYGMNFKFMPELNWKYG-YPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHhCCcccCccccchhH-HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33344444 46667777665441 111 123 333333344445567788899998
No 53
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=32.88 E-value=4.1e+02 Score=26.89 Aligned_cols=131 Identities=9% Similarity=-0.036 Sum_probs=60.9
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhcCcccchhccCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCCc
Q 045659 204 KLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPN 283 (461)
Q Consensus 204 ~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 283 (461)
+++....+.+...-+.+..+..+..++-............. .+...+.+.......+. -. .+|.
T Consensus 57 ~m~wk~Y~~~~l~fn~~~~~~~~~~l~~Q~~Lplnp~~~~~-----------~~~~lafnTa~SF~TNT---n~-Q~Ys- 120 (559)
T PRK05482 57 EMSWKQYALALLAFNLVGFLLLYALLRLQGWLPLNPQGLPG-----------MSPDLAFNTAVSFVTNT---NW-QHYS- 120 (559)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccCCC-----------CChhHHHHhHhhhhccC---cc-cccc-
Confidence 56667777777777777777766666533333222211111 11223333333322211 11 1233
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045659 284 PRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVIASTILF 351 (461)
Q Consensus 284 g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (461)
|+..++.++...-+. .......+.+.++...+-|-+.+++.+..-+...+..|..+.+.+|++++..
T Consensus 121 gE~~lsy~sQm~~l~-~~~F~saa~G~av~~a~iRg~~~~~~~~lGNf~~D~~r~~~~vllPls~i~a 187 (559)
T PRK05482 121 GESTLSYLSQMAGLT-VQNFVSAATGIAVAIALIRGFARKSTGTLGNFWVDLTRSTLRVLLPLSLVIA 187 (559)
T ss_pred CcchHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 366666554333222 1122333445555555566666555444544555555555555555555443
No 54
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=32.75 E-value=4.8e+02 Score=25.46 Aligned_cols=73 Identities=12% Similarity=0.055 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 045659 257 GLPSALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAV 336 (461)
Q Consensus 257 ~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 336 (461)
+-|..++.+.-.++-....-+.+....|+.++ .-+.-....|++.+....+++.+|+.++.+-+|...-..
T Consensus 379 sGpLIiSh~yLLiGcslPIWms~~p~~~~ral---------~~laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~ 449 (510)
T KOG2468|consen 379 SGPLIISHFYLLIGCSLPIWMSNSPCGGDRAL---------ALLAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTL 449 (510)
T ss_pred CCceeHHHHHHHHhcccchhccCCCCCchhhh---------hhhhhheeeccchHHHHHHhhhhcceecCCCcceeehhh
Confidence 56777776666666555555555544332222 233345678999999999999999999888877666544
Q ss_pred HH
Q 045659 337 FV 338 (461)
Q Consensus 337 ~~ 338 (461)
..
T Consensus 450 Af 451 (510)
T KOG2468|consen 450 AF 451 (510)
T ss_pred HH
Confidence 43
No 55
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=31.19 E-value=66 Score=28.79 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=15.4
Q ss_pred chhHhhHHHHHHHHHHHHH-HHHHHHhc--CCCCC
Q 045659 430 RGKGLWTGIVVGSAVQSTM-LCLITCFT--NWNKQ 461 (461)
Q Consensus 430 g~~g~~~a~~~~~~~~~~~-~~~~~~~~--~w~~~ 461 (461)
...|++.-..+.-.+..++ ..|.+||| .||++
T Consensus 259 ~Pcgiaalvllil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 259 LPYGIAALVLIILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3344444444444444444 44555554 68764
No 56
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=30.63 E-value=1.6e+02 Score=27.25 Aligned_cols=50 Identities=18% Similarity=0.080 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHhc-CCc-h------hHhhHHHHHHHHHHHHHHHHHHHhcCC
Q 045659 406 CINFVAFYLVGLPVGGVLGFVV-HLR-G------KGLWTGIVVGSAVQSTMLCLITCFTNW 458 (461)
Q Consensus 406 ~~~~~~~~~~~i~l~~~l~~~~-~~g-~------~g~~~a~~~~~~~~~~~~~~~~~~~~w 458 (461)
..++++ ++..|..++.+.+. ++. + +|.++ .....++..+..++++||++|
T Consensus 258 ~lTv~s--~if~pptliagiyGMNf~~mP~~~~~~g~~~-~l~~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 258 IFSVVS--VVFLPPTLVASSYGMNFEFMPELKWSFGYPG-AIILMILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHH--HHHHHHHHHHhhcccccCCCCCCCCcHHHHH-HHHHHHHHHHHHHHHHHHccc
Confidence 344443 56667777665431 111 1 23332 333334445556788888888
No 57
>TIGR00680 kdpA K+-transporting ATPase, KdpA. Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit PubMed:9858692].
Probab=29.12 E-value=6.1e+02 Score=25.53 Aligned_cols=132 Identities=12% Similarity=-0.055 Sum_probs=64.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhcCcccchhccCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCCc
Q 045659 204 KLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPN 283 (461)
Q Consensus 204 ~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 283 (461)
+++....+.+....+.+..+..+..++...+.......... .++..+++.......+. -. .++.
T Consensus 60 em~Wk~Ya~alL~fn~~~~~~~~~il~~Q~~LPlNP~~~~~-----------~s~~lAfNTavSFvTNT---Nw-Q~Ys- 123 (563)
T TIGR00680 60 EMGWTQYVSAALISNLVMGVFLFLILMFQGSLPLNPTGLPA-----------PSWDLALNTAVSFVTNT---NW-QSYS- 123 (563)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCC-----------CChhHHHHhHhhhhccC---cc-cccc-
Confidence 66777788888888888887777666533333222111111 12223334333332211 11 1233
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045659 284 PRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVIASTILFS 352 (461)
Q Consensus 284 g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (461)
|+..++.++...-+.. ......+.+.++..-+-|.+.+++.+..-+...+..|..+.+.+|++++..+
T Consensus 124 GE~tlSy~sQm~gl~~-~nF~SAAtGiava~AliRgl~~~~~~~lGNFwvDl~R~~l~vLLPlS~i~Al 191 (563)
T TIGR00680 124 GETTYSYFSQMGGLGV-QNFTSAATGIAVAIALIRGLTRQSMSTLGNFWVDLVRSILRILLPISLVGAI 191 (563)
T ss_pred CcchHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3666665543332221 1122334445555555666665544445455555555555555555555443
No 58
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=26.84 E-value=1.5e+02 Score=27.55 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=25.3
Q ss_pred HhhhhHHHHHHHhc-CCc-------hhHhhHHHHHHHHHHHHHHHHHHHhcCC
Q 045659 414 LVGLPVGGVLGFVV-HLR-------GKGLWTGIVVGSAVQSTMLCLITCFTNW 458 (461)
Q Consensus 414 ~~~i~l~~~l~~~~-~~g-------~~g~~~a~~~~~~~~~~~~~~~~~~~~w 458 (461)
++.+|..++.+.+. +++ -+|.|++ .+..++.+++.++++||++|
T Consensus 270 ~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~-l~~m~~~~~~~~~~frrk~W 321 (322)
T COG0598 270 TIFLPPTLITGFYGMNFKGMPELDWPYGYPIA-LILMLLLALLLYLYFRRKGW 321 (322)
T ss_pred HHHHhhHHHHcccccCCCCCcCCCCcccHHHH-HHHHHHHHHHHHHHHHhcCc
Confidence 56667777766541 112 1244444 34445555667788888888
No 59
>PRK10739 putative antibiotic transporter; Provisional
Probab=26.62 E-value=4e+02 Score=22.68 Aligned_cols=59 Identities=8% Similarity=0.035 Sum_probs=39.4
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHh
Q 045659 313 STRVSNELGAGNPEAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMT 375 (461)
Q Consensus 313 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l 375 (461)
.|..-...++.+.++-|+..++...... .+...+.++++.+.+.|+=+-+..+.+..++
T Consensus 21 ipiflslt~~~~~~~r~~ia~~a~~~a~----~ill~f~~~G~~iL~~fGIsl~afrIAGGil 79 (197)
T PRK10739 21 LPIFMSVLKHLEPKRRRAIMIRELLIAL----LVMLVFLFAGEKILAFLNLRTETVSISGGII 79 (197)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3666666666777777778777655444 4455788899999999976655555554433
No 60
>PTZ00370 STEVOR; Provisional
Probab=26.46 E-value=95 Score=27.90 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=16.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCcc
Q 045659 208 LGAAAAFSLSTWLNVVLVSPYVMYSSS 234 (461)
Q Consensus 208 ~g~~~a~~i~~~~~~~~~~~~~~~~~~ 234 (461)
.|++.-.++--.+..+++++|++|||+
T Consensus 257 ygiaalvllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 257 YGIAALVLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444455555666777777776554
No 61
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.41 E-value=79 Score=24.47 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=10.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhc
Q 045659 208 LGAAAAFSLSTWLNVVLVSPYVMY 231 (461)
Q Consensus 208 ~g~~~a~~i~~~~~~~~~~~~~~~ 231 (461)
.|+.++.+++-+...++..|+++|
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333333444443
No 62
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=26.00 E-value=3.6e+02 Score=21.87 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045659 324 NPEAARRAAWSAVFVATLEAVIASTILF 351 (461)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (461)
|.++-++..++...+++.++++......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (163)
T PF04235_consen 9 RPEEHRKLLRRLLLIGLAVGLPLALLSA 36 (163)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888888888877777766655
No 63
>PTZ00370 STEVOR; Provisional
Probab=25.31 E-value=68 Score=28.80 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=15.1
Q ss_pred chhHhhHHHHHHHHHHHHH-HHHHHHhc--CCCCC
Q 045659 430 RGKGLWTGIVVGSAVQSTM-LCLITCFT--NWNKQ 461 (461)
Q Consensus 430 g~~g~~~a~~~~~~~~~~~-~~~~~~~~--~w~~~ 461 (461)
...|++.-..+.-.+..++ ..|.+||| .||++
T Consensus 255 ~Pygiaalvllil~vvliilYiwlyrrRK~swkhe 289 (296)
T PTZ00370 255 YPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHE 289 (296)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 3444444444444444444 44555554 68653
No 64
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=24.68 E-value=6.9e+02 Score=24.73 Aligned_cols=57 Identities=4% Similarity=-0.003 Sum_probs=37.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-c--ChHHHHHHHHHHHHHHHHHHHHHHh
Q 045659 28 EFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGH-L--GQLQLASVAIATSVTNVVGFSFLSG 85 (461)
Q Consensus 28 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-l--g~~~~~~~~~~~~i~~~~~~~~~~g 85 (461)
..|+-+.++.+-+.+++.....+..-..+... . ++...|..=...++...+ .-+..|
T Consensus 10 s~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi-~DP~~G 69 (467)
T COG2211 10 SLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAI-TDPIMG 69 (467)
T ss_pred cHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH-hcchhe
Confidence 45667888888888877777777666666655 3 455556555566666665 444444
No 65
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=23.72 E-value=4.9e+02 Score=22.64 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=22.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcC
Q 045659 101 QQYQRLGIHTNSAIISLIAICPIICIPWIFMNKLLLTLG 139 (461)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (461)
++++...+.+..++...+++-+++++++.+..++.++++
T Consensus 141 E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~ 179 (230)
T PF03904_consen 141 EKYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLH 179 (230)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 344555555555555555555555555666667666665
No 66
>COG3162 Predicted membrane protein [Function unknown]
Probab=22.85 E-value=3.2e+02 Score=20.18 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=33.8
Q ss_pred hhchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-cChHHHHH
Q 045659 19 LVLVGEFVKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGH-LGQLQLAS 67 (461)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~ 67 (461)
.++++ +..++--++++|+.+..+........-..+-.. +|+...++
T Consensus 12 ~p~f~---eLv~kr~~Fa~~ltl~flv~Y~~filLiaf~~~~l~tp~~~~ 58 (102)
T COG3162 12 NPRFR---ELVRKRRRFAVPLTLIFLVVYFGFILLIAFAPGWLATPLFGA 58 (102)
T ss_pred CHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCcccCC
Confidence 44555 678888889999999888888777766666654 57666666
Done!