Query 045659
Match_columns 461
No_of_seqs 278 out of 1959
Neff 10.7
Searched_HMMs 13730
Date Mon Mar 25 06:52:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045659.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045659hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 77.2 21 0.0015 30.6 32.3 27 428-454 406-432 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 18.3 2.4E+02 0.018 23.1 17.0 27 204-230 406-432 (447)
3 d1nkzb_ f.3.1.1 (B:) Light-har 12.3 1.1E+02 0.0077 16.0 4.2 34 324-357 7-40 (41)
4 d2iuba2 f.17.3.1 (A:286-349) M 9.9 1.1E+02 0.008 17.8 2.8 10 414-423 14-23 (64)
5 d1lghb_ f.3.1.1 (B:) Light-har 9.8 1.4E+02 0.01 16.0 2.8 34 323-356 9-42 (43)
6 d1ppjd2 f.23.11.1 (D:196-241) 5.9 1.4E+02 0.01 16.3 1.7 11 448-458 22-32 (46)
7 d1ijdb_ f.3.1.1 (B:) Light-har 5.5 2.3E+02 0.017 14.6 4.0 33 323-355 7-39 (40)
8 d2yvxa3 f.57.1.1 (A:276-448) M 5.5 5E+02 0.037 18.5 5.4 30 98-127 69-98 (173)
9 d2r6gg1 f.58.1.1 (G:7-296) Mal 3.5 8.5E+02 0.062 18.3 9.2 39 314-352 183-221 (290)
10 d1jo5a_ f.3.1.1 (A:) Light-har 3.5 2.4E+02 0.017 15.4 1.4 33 324-356 15-47 (48)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=77.17 E-value=21 Score=30.63 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=15.8
Q ss_pred CCchhHhhHHHHHHHHHHHHHHHHHHH
Q 045659 428 HLRGKGLWTGIVVGSAVQSTMLCLITC 454 (461)
Q Consensus 428 ~~g~~g~~~a~~~~~~~~~~~~~~~~~ 454 (461)
+.|..+..+......++..++.....+
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467776666666666665555444443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=18.27 E-value=2.4e+02 Score=23.08 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=13.7
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHh
Q 045659 204 KLGILGAAAAFSLSTWLNVVLVSPYVM 230 (461)
Q Consensus 204 ~~g~~g~~~a~~i~~~~~~~~~~~~~~ 230 (461)
+.|..+..+.......+..++......
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456555555555555555444444443
No 3
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=12.28 E-value=1.1e+02 Score=16.00 Aligned_cols=34 Identities=18% Similarity=0.080 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 045659 324 NPEAARRAAWSAVFVATLEAVIASTILFSCRFIV 357 (461)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 357 (461)
+.+++.+..-.+.+....+++..=++.+...+|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4578888888999988888888877777777664
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=9.89 E-value=1.1e+02 Score=17.80 Aligned_cols=10 Identities=10% Similarity=0.148 Sum_probs=4.9
Q ss_pred HhhhhHHHHH
Q 045659 414 LVGLPVGGVL 423 (461)
Q Consensus 414 ~~~i~l~~~l 423 (461)
++.+|++.+.
T Consensus 14 ~iflP~t~i~ 23 (64)
T d2iuba2 14 TIFMPLTFIA 23 (64)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 3445555544
No 5
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=9.84 E-value=1.4e+02 Score=15.97 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=22.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045659 323 GNPEAARRAAWSAVFVATLEAVIASTILFSCRFI 356 (461)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (461)
++-++..+.+..++..-..+++..=++.+...|+
T Consensus 9 ~EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 9 EEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3456667777777777777776666666655554
No 6
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.91 E-value=1.4e+02 Score=16.25 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=6.0
Q ss_pred HHHHHHHhcCC
Q 045659 448 MLCLITCFTNW 458 (461)
Q Consensus 448 ~~~~~~~~~~w 458 (461)
...++.+|..|
T Consensus 22 ~l~yy~KR~~W 32 (46)
T d1ppjd2 22 PLVYAMKRHKW 32 (46)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 34455666555
No 7
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=5.48 E-value=2.3e+02 Score=14.56 Aligned_cols=33 Identities=18% Similarity=0.115 Sum_probs=23.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045659 323 GNPEAARRAAWSAVFVATLEAVIASTILFSCRF 355 (461)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (461)
++.+++.+..-.+.+....+++..=++.+...+
T Consensus 7 ~eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 7 EQAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 345778888888888888877776666655544
No 8
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=5.47 E-value=5e+02 Score=18.48 Aligned_cols=30 Identities=0% Similarity=-0.224 Sum_probs=18.6
Q ss_pred hCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 045659 98 FGAQQYQRLGIHTNSAIISLIAICPIICIP 127 (461)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (461)
.|+-+.++.++.+.+=+..+++.+..++++
T Consensus 69 ~g~i~~~~~~~~l~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 69 TRDLDLRDWRRVFLKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp TTCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334355566777777777777776666554
No 9
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=3.46 E-value=8.5e+02 Score=18.33 Aligned_cols=39 Identities=18% Similarity=-0.066 Sum_probs=28.0
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045659 314 TRVSNELGAGNPEAARRAAWSAVFVATLEAVIASTILFS 352 (461)
Q Consensus 314 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (461)
-..++..|+++.+..++..-...+=+...+...+....+
T Consensus 183 ~EAA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~~ 221 (290)
T d2r6gg1 183 EEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAI 221 (290)
T ss_dssp HHHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhcCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhhc
Confidence 344778888888888888888877777666666554433
No 10
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.46 E-value=2.4e+02 Score=15.42 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045659 324 NPEAARRAAWSAVFVATLEAVIASTILFSCRFI 356 (461)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (461)
+-++..+.+-.++..-..+++..=++.+...|+
T Consensus 15 EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrPW 47 (48)
T d1jo5a_ 15 QAQELHSVYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445666677777776666666666666655554
Done!