BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045661
(719 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 75/121 (61%), Gaps = 6/121 (4%)
Query: 4 KIKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT--HRV 61
K K++E+ ++R + LP NR+C +C+ GP YV T +FVCT+CSG R HRV
Sbjct: 5 KRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRV 64
Query: 62 KSISMAKFSAEEVSALQAAGNERARQIYLKDWDPQRNSYPDGR----IRDFIKHVYVDRR 117
KSISM F+ +E+ LQ GNE +QI+L +D + ++ PD R +++F++ Y +R
Sbjct: 65 KSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKR 124
Query: 118 Y 118
+
Sbjct: 125 W 125
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 69/111 (62%), Gaps = 6/111 (5%)
Query: 14 IIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT--HRVKSISMAKFSA 71
++R + LP NR+C +C+ GP YV T +FVCT+CSG R HRVKSISM F+
Sbjct: 10 MLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQ 69
Query: 72 EEVSALQAAGNERARQIYLKDWDPQRNSYPDGR----IRDFIKHVYVDRRY 118
+E+ LQ GNE +QI+L +D + ++ PD R +++F++ Y +R+
Sbjct: 70 QEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 120
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 69.7 bits (169), Expect = 6e-12, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Query: 2 GNKIKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREF---T 58
G +K+ +R + ++ LL +N+ C +C GP++ F+C C+G+HR
Sbjct: 5 GKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHI 64
Query: 59 HRVKSISMAKFSAEEVSALQAAGNERARQIYLKDWDPQRNSYP--DGRIRDFIKHVYVDR 116
RVKS+++ +++ E++ +Q GN +A ++Y + + P+ P D + FI+ Y +
Sbjct: 65 SRVKSVNLDQWTQEQIQCMQEMGNGKANRLY-EAYLPETFRRPQIDPAVEGFIRDKYEKK 123
Query: 117 RYAGEKTD 124
+Y D
Sbjct: 124 KYMDRSLD 131
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 2 GNKIKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREF---T 58
G K +E+ + I+ LL+ +N+ C +C GP++ F+C C+G+HR
Sbjct: 7 GKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHI 66
Query: 59 HRVKSISMAKFSAEEVSALQAAGNERARQIY 89
RVKS+++ +++AE++ +Q GN +AR +Y
Sbjct: 67 SRVKSVNLDQWTAEQIQCMQDMGNTKARLLY 97
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 23 ENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREF-THR--VKSISMAKFSAEEVSALQA 79
EN C C PQ+V T+ ++C CSG HR H V+S++M K+ E+ ++A
Sbjct: 36 ENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKA 95
Query: 80 AGNERARQIY--LKDWDP 95
GN + R+ +D+DP
Sbjct: 96 GGNAKFREFLESQEDYDP 113
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 9 ERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREF--THRVKSISM 66
ER ++ LL+ P N RC +C P + T F+C +CSG+HR +VKS+ +
Sbjct: 22 ERRRAVLE-LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRL 80
Query: 67 AKFSAEEVSALQAAGNERAR 86
+ +V + + GN+ AR
Sbjct: 81 DAWEEAQVEFMASHGNDAAR 100
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 9 ERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREF--THRVKSISM 66
ER ++ LL+ P N RC +C P + T F+C +CSG+HR +VKS+ +
Sbjct: 20 ERRRAVLE-LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRL 78
Query: 67 AKFSAEEVSALQAAGNERAR 86
+ +V + + GN+ AR
Sbjct: 79 DAWEEAQVEFMASHGNDAAR 98
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 23 ENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREF---THRVKSISMAKFSAEEVSALQA 79
EN C C PQ+V T+ ++C CSG HR V+S++M K+ E+ ++A
Sbjct: 37 ENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKA 96
Query: 80 AGNERARQIY--LKDWDP 95
GN + R+ +D+DP
Sbjct: 97 GGNAKFREFLESQEDYDP 114
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 22 PENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREF---THRVKSISMAKFSAEEVSALQ 78
PENR C +C P ++ +F F+C NCS HR+ V+S + KF+ ++ +
Sbjct: 34 PENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMD 93
Query: 79 AAGNERAR----QIYLKDWDPQRNSY 100
GN RAR Q+ ++ P+ Y
Sbjct: 94 IGGNGRARNYFKQVLGVNFSPKTKEY 119
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 18/109 (16%)
Query: 24 NRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREF---THRVKSISMAKFSAEEVSALQAA 80
N +C +C P +V F+C NCSGVHR V+SI M F+ E++ +
Sbjct: 22 NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKG 81
Query: 81 GNERARQIYLKDWDPQRNSYPDGRIRDFIKHVYVDRRYAGEKTDKFLRL 129
GN++ Q YL+++ I DFI +R+Y + D + ++
Sbjct: 82 GNKKC-QTYLENYG----------ISDFIP----ERKYRTKAADHYRKI 115
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
Query: 22 PENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT---HRVKSISMAKFSAEEVSALQ 78
P N +C +C P ++ T C CSGVHRE R++S+++ E+
Sbjct: 40 PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL 99
Query: 79 AAGNERARQIYLKDW----DPQRNSYPD-GRIRDFIKHVYVDRRYA 119
GN ++ P+ ++ D G RD+I YV+ R+A
Sbjct: 100 NMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFA 145
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
Query: 22 PENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREF---THRVKSISMAKFSAEEVSALQ 78
P N +C +C P ++ T C CSGVHRE R++S+++ E+
Sbjct: 21 PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL 80
Query: 79 AAGNERARQIYLKDW----DPQRNSYPD-GRIRDFIKHVYVDRRYA 119
GN ++ P+ ++ D G RD+I YV+ R+A
Sbjct: 81 NMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFA 126
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 11 IEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFTHRVKSISMAKFS 70
I+ + + L +P N+ C +C P + T+ F+C +CSGVHR + I +
Sbjct: 24 IQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELD 83
Query: 71 AE----EVSALQAAGNERARQIY 89
+ ++ +Q GN A +
Sbjct: 84 SNWNWFQLRCMQVGGNANATAFF 106
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 6 KEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFTHRVKSIS 65
K+D I I + L +P N+ C +C P + T+ F+C +CSG HR + I
Sbjct: 13 KQD--ILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIR 70
Query: 66 M----AKFSAEEVSALQAAGNERARQIY 89
+ +S ++ +Q GN A +
Sbjct: 71 STELDSNWSWFQLRCMQVGGNASASSFF 98
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 14 IIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREF-TH--RVKSISMAKFS 70
II + ++ N C +C P ++ T C CSG+HRE H R++S+++
Sbjct: 7 IISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLG 66
Query: 71 AEEVSALQAAGNERARQIY---LKDWDPQR-NSYPDGRIR-DFIKHVYVDRRYAGEK 122
E+ + GN +I L DP + N D R D+I Y++RRYA +K
Sbjct: 67 TSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 123
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 24 NRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREF-TH--RVKSISMAKFSAEEVSALQAA 80
N +C +C P++ +C CSG+HR H +V+S+++ + E V +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 81 GNERARQIY 89
GN QIY
Sbjct: 105 GNVIINQIY 113
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 24 NRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREF-TH--RVKSISMAKFSAEEVSALQAA 80
N +C +C P++ +C CSG+HR H +V+S+++ + E V +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 81 GNERARQIY 89
GN QIY
Sbjct: 105 GNVIINQIY 113
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 24 NRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREF-TH--RVKSISMAKFSAEEVSALQAA 80
N +C +C P++ +C CSG+HR H +V+S+++ + E V +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 81 GNERARQIY 89
GN QIY
Sbjct: 105 GNVIINQIY 113
>pdb|2YCH|A Chain A, Pilm-Piln Type Iv Pilus Biogenesis Complex
Length = 377
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 19/113 (16%)
Query: 43 LTFVCTNCSGVHREFTHRV-KSISMAKFSAEEV------SALQAAGNERARQIYLKDWDP 95
L SG ++FT + +S ++ +AEEV + L E L D+D
Sbjct: 214 LAVRVLTLSG--KDFTEAIARSFNLDLLAAEEVKRTYGXATLPTEDEE-----LLLDFDA 266
Query: 96 QRNSYPDGRIRDFIKHVYVDRRYAGEKTDKFLRLRLGEKEDSCQSNKVGAYIG 148
+R Y GRI D I+ V V+ ++ +F R++L E S +VG +G
Sbjct: 267 ERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEA-----SPEVGYLLG 314
>pdb|3SQG|B Chain B, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
pdb|3SQG|E Chain E, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
pdb|3SQG|H Chain H, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
Length = 433
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 7 EDERIEGIIRGLLKLPENRRCINCNC--LGPQYVCTTFLTFVCTNCS 51
E + +G+I+ L K+P + + L Y CT L VC NC+
Sbjct: 269 EKAKADGVIKSLKKMPSGFTVYDADDMQLWNAYACTAMLAGVCVNCA 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.126 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,189,069
Number of Sequences: 62578
Number of extensions: 711624
Number of successful extensions: 1029
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1002
Number of HSP's gapped (non-prelim): 20
length of query: 719
length of database: 14,973,337
effective HSP length: 106
effective length of query: 613
effective length of database: 8,340,069
effective search space: 5112462297
effective search space used: 5112462297
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)