Query 045661
Match_columns 719
No_of_seqs 170 out of 1173
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 06:56:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2olm_A Nucleoporin-like protei 100.0 3.4E-38 1.2E-42 294.7 10.3 122 2-123 3-130 (140)
2 2crr_A Stromal membrane-associ 100.0 8.1E-38 2.8E-42 292.5 7.9 120 4-123 9-132 (141)
3 2iqj_A Stromal membrane-associ 100.0 1E-37 3.4E-42 289.8 7.0 120 4-123 7-130 (134)
4 3jue_A Arfgap with coiled-coil 100.0 4E-34 1.4E-38 296.4 8.1 123 1-123 22-152 (368)
5 3lju_X ARF-GAP with dual PH do 100.0 7.6E-33 2.6E-37 290.5 10.5 121 3-123 13-139 (386)
6 2owa_A Arfgap-like finger doma 100.0 2.6E-31 9E-36 248.2 8.2 114 5-118 17-133 (138)
7 2crw_A ARF GAP 3, ADP-ribosyla 100.0 1.2E-30 4.1E-35 246.5 6.9 105 1-117 8-116 (149)
8 3dwd_A ADP-ribosylation factor 100.0 1E-29 3.4E-34 239.8 8.6 113 7-120 21-145 (147)
9 2b0o_E UPLC1; arfgap, structur 99.9 3.4E-28 1.2E-32 242.3 10.1 118 6-123 24-149 (301)
10 3lvq_E ARF-GAP with SH3 domain 99.9 1.2E-28 4.1E-33 259.6 6.7 118 6-123 5-130 (497)
11 2p57_A GTPase-activating prote 99.9 2.7E-28 9.1E-33 229.5 6.6 89 6-94 19-111 (144)
12 1dcq_A PYK2-associated protein 99.9 7E-28 2.4E-32 237.1 7.9 115 9-123 2-124 (278)
13 3sub_A ADP-ribosylation factor 99.9 1.8E-27 6.2E-32 227.5 5.7 88 7-94 4-95 (163)
14 3o47_A ADP-ribosylation factor 99.9 2.3E-26 7.7E-31 233.8 8.6 91 5-95 18-111 (329)
15 1u5k_A Hypothetical protein; O 84.5 0.43 1.5E-05 46.8 2.5 49 21-82 147-195 (244)
16 4glq_A Methyl-accepting chemot 47.5 17 0.00059 33.4 4.3 27 68-94 132-158 (171)
17 1ffk_W Ribosomal protein L37AE 43.6 20 0.00069 30.6 3.8 41 11-53 13-54 (73)
18 2zet_C Melanophilin; complex, 39.9 15 0.0005 35.0 2.6 34 23-56 67-105 (153)
19 1d4u_A Nucleotide excision rep 35.5 7.5 0.00026 35.5 -0.1 32 23-54 4-36 (111)
20 4gat_A Nitrogen regulatory pro 32.6 23 0.00077 29.7 2.3 36 22-57 7-43 (66)
21 1gnf_A Transcription factor GA 32.5 13 0.00043 29.2 0.7 36 23-58 3-39 (46)
22 2vut_I AREA, nitrogen regulato 31.1 23 0.0008 27.3 2.0 32 25-56 2-34 (43)
23 1zbd_B Rabphilin-3A; G protein 28.3 32 0.0011 31.9 2.8 50 6-55 31-91 (134)
24 4hc9_A Trans-acting T-cell-spe 27.5 20 0.00068 32.6 1.2 33 24-56 5-38 (115)
25 3dfx_A Trans-acting T-cell-spe 26.8 22 0.00076 29.6 1.3 38 21-58 4-42 (63)
26 1tjl_A DNAK suppressor protein 26.5 13 0.00043 35.3 -0.2 34 21-54 108-142 (151)
27 2d8u_A Ubiquitin ligase TRIM63 25.8 49 0.0017 25.8 3.1 43 22-66 6-50 (64)
28 2did_A Tripartite motif protei 24.6 57 0.0019 24.7 3.2 41 22-65 6-48 (53)
29 2dja_A Midline-2; tripartite m 24.4 54 0.0019 26.9 3.2 42 22-65 16-59 (84)
30 1dl6_A Transcription factor II 23.1 52 0.0018 26.4 2.8 31 24-55 11-41 (58)
31 1vq8_Z 50S ribosomal protein L 22.1 28 0.00095 30.2 1.0 42 11-54 13-55 (83)
32 3cc2_Z 50S ribosomal protein L 21.9 28 0.00094 32.3 1.0 41 11-53 46-87 (116)
33 3g9m_A Glucocorticoid receptor 21.2 23 0.00079 30.7 0.4 31 23-56 1-31 (90)
34 2kgo_A Uncharacterized protein 20.5 16 0.00055 33.3 -0.8 31 24-54 56-87 (108)
No 1
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=3.4e-38 Score=294.74 Aligned_cols=122 Identities=39% Similarity=0.720 Sum_probs=111.9
Q ss_pred CcchhhhHHHHHHHHHHhcCCCCCcccCCCCCCCCeeEccceeEEecccccccccCC--ceeeecccCCCCHHHHHHHHh
Q 045661 2 GNKIKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT--HRVKSISMAKFSAEEVSALQA 79 (719)
Q Consensus 2 ~sr~kedernekiLr~Llk~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGIHRsLG--HRVKSITLDtWT~EEVe~Mq~ 79 (719)
.++.+++|+++++|+.|++.|+|++|||||+++|+|||+|||||||++|+||||+|| ||||||+||+|++++|++|+.
T Consensus 3 ~~~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~s~VrSl~ld~w~~~~l~~m~~ 82 (140)
T 2olm_A 3 SAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQK 82 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSCCCEEETTTCCCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCcceeeecCCCCCCHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999 699999999999999999999
Q ss_pred hchHHHHHHHhhcCCCCCCCCCch----HHHHHHHHHHhhccccCCCC
Q 045661 80 AGNERARQIYLKDWDPQRNSYPDG----RIRDFIKHVYVDRRYAGEKT 123 (719)
Q Consensus 80 gGN~rAN~IwEa~~pp~rkp~PDS----~re~FIRaKYVdKrF~~~~~ 123 (719)
+||.++|++||+++++...+.|+. .+++||++||++|+|+.+..
T Consensus 83 ~GN~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~~~ 130 (140)
T 2olm_A 83 HGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPE 130 (140)
T ss_dssp CHHHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCCHH
T ss_pred hccHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCCcc
Confidence 999999999999998755455542 68899999999999997543
No 2
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=8.1e-38 Score=292.52 Aligned_cols=120 Identities=29% Similarity=0.634 Sum_probs=111.3
Q ss_pred chhhhHHHHHHHHHHhcCCCCCcccCCCCCCCCeeEccceeEEecccccccccCC-c--eeeecccCCCCHHHHHHHHhh
Q 045661 4 KIKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT-H--RVKSISMAKFSAEEVSALQAA 80 (719)
Q Consensus 4 r~kedernekiLr~Llk~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGIHRsLG-H--RVKSITLDtWT~EEVe~Mq~g 80 (719)
..+++|+++++|+.|++.++|++|||||+++|+|||+|||||||++|+||||.|| | |||||+||+|++++|++|+.+
T Consensus 9 ~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~ 88 (141)
T 2crr_A 9 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDM 88 (141)
T ss_dssp TTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999 4 999999999999999999999
Q ss_pred chHHHHHHHhhcCCCC-CCCCCchHHHHHHHHHHhhccccCCCC
Q 045661 81 GNERARQIYLKDWDPQ-RNSYPDGRIRDFIKHVYVDRRYAGEKT 123 (719)
Q Consensus 81 GN~rAN~IwEa~~pp~-rkp~PDS~re~FIRaKYVdKrF~~~~~ 123 (719)
||.++|++||++++.. +++.++..+++|||+||++|+|+.+..
T Consensus 89 GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~ 132 (141)
T 2crr_A 89 GNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKNA 132 (141)
T ss_dssp HHHHHHHHGGGSCCTTCCCCCSHHHHHHHHHHHHTSCTTCCCGG
T ss_pred ccHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHhcCcccCCCc
Confidence 9999999999999873 456666689999999999999997653
No 3
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=289.77 Aligned_cols=120 Identities=26% Similarity=0.610 Sum_probs=106.8
Q ss_pred chhhhHHHHHHHHHHhcCCCCCcccCCCCCCCCeeEccceeEEecccccccccCC---ceeeecccCCCCHHHHHHHHhh
Q 045661 4 KIKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT---HRVKSISMAKFSAEEVSALQAA 80 (719)
Q Consensus 4 r~kedernekiLr~Llk~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGIHRsLG---HRVKSITLDtWT~EEVe~Mq~g 80 (719)
..+++|+++++|+.|++.|+|++|||||+++|+|||+|||||||++|+||||+|| +|||||+||+|++++|++|+.+
T Consensus 7 ~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~ 86 (134)
T 2iqj_A 7 SVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM 86 (134)
T ss_dssp ------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTC
T ss_pred cHhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHH
Confidence 3577889999999999999999999999999999999999999999999999999 4999999999999999999999
Q ss_pred chHHHHHHHhhcCCCC-CCCCCchHHHHHHHHHHhhccccCCCC
Q 045661 81 GNERARQIYLKDWDPQ-RNSYPDGRIRDFIKHVYVDRRYAGEKT 123 (719)
Q Consensus 81 GN~rAN~IwEa~~pp~-rkp~PDS~re~FIRaKYVdKrF~~~~~ 123 (719)
||.++|++||++++.. .++.++..+++|||+||++|+|+.+..
T Consensus 87 GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~ 130 (134)
T 2iqj_A 87 GNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSL 130 (134)
T ss_dssp HHHHHHHHHTTTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTTC
T ss_pred chHHHHHHHHhcCCccCCCCCchHHHHHHHHHHHhCCeeeCCcc
Confidence 9999999999999763 456666689999999999999997643
No 4
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=4e-34 Score=296.38 Aligned_cols=123 Identities=20% Similarity=0.417 Sum_probs=105.7
Q ss_pred CCcchhhhHHHHHHHHHHhcCCCCCcccCCCCCCCCeeEccceeEEecccccccccCC---ceeeecccCCCCHHHHHHH
Q 045661 1 MGNKIKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT---HRVKSISMAKFSAEEVSAL 77 (719)
Q Consensus 1 M~sr~kedernekiLr~Llk~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGIHRsLG---HRVKSITLDtWT~EEVe~M 77 (719)
+++|.|++++++++|+.|++.++|++|||||+++|+|||+|||||||++|+||||+|| +|||||+||+|+.++|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~ 101 (368)
T 3jue_A 22 GMARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLM 101 (368)
T ss_dssp ----------CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999998 4999999999999999999
Q ss_pred HhhchHHHHHHHhhcCCC--CCCCCCch---HHHHHHHHHHhhccccCCCC
Q 045661 78 QAAGNERARQIYLKDWDP--QRNSYPDG---RIRDFIKHVYVDRRYAGEKT 123 (719)
Q Consensus 78 q~gGN~rAN~IwEa~~pp--~rkp~PDS---~re~FIRaKYVdKrF~~~~~ 123 (719)
+.+||.++|+|||++|+. .+++.|++ .+++||++||++|+|+.+..
T Consensus 102 ~~~gn~~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l~ 152 (368)
T 3jue_A 102 CELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLP 152 (368)
T ss_dssp HHSCHHHHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSCC
T ss_pred HHHccHHHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccch
Confidence 999999999999999986 35566654 78999999999999997654
No 5
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.97 E-value=7.6e-33 Score=290.50 Aligned_cols=121 Identities=23% Similarity=0.472 Sum_probs=110.9
Q ss_pred cchhhhHHHHHHHHHHhcCCCCCcccCCCCCCCCeeEccceeEEecccccccccCCc--eeeecccCCCCHHHHHHHHhh
Q 045661 3 NKIKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFTH--RVKSISMAKFSAEEVSALQAA 80 (719)
Q Consensus 3 sr~kedernekiLr~Llk~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGIHRsLGH--RVKSITLDtWT~EEVe~Mq~g 80 (719)
+..+++++++++|++|++.|+|+.|||||+++|+|||+|||||||++|+||||+|.| +||||+||+|++++|++|+.+
T Consensus 13 ~~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l~his~v~s~~ld~w~~~~~~~~~~~ 92 (386)
T 3lju_X 13 NLYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRLDAWEEAQVEFMASH 92 (386)
T ss_dssp SHHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTCTTTCCEEETTTSCCCHHHHHHHHHS
T ss_pred chhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCCCccceeeeecccCCCHHHHHHHHHh
Confidence 346889999999999999999999999999999999999999999999999999985 999999999999999999999
Q ss_pred chHHHHHHHhhcCCCC-CCCCCch---HHHHHHHHHHhhccccCCCC
Q 045661 81 GNERARQIYLKDWDPQ-RNSYPDG---RIRDFIKHVYVDRRYAGEKT 123 (719)
Q Consensus 81 GN~rAN~IwEa~~pp~-rkp~PDS---~re~FIRaKYVdKrF~~~~~ 123 (719)
||.++|++||+++++. .+|.+++ .+++|||+||++|+|+....
T Consensus 93 gN~~~~~~~e~~~~~~~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 93 GNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp SHHHHHHHHTTTCCTTSCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred cchHHHHHHhccCCccCCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence 9999999999999874 4555543 67899999999999997553
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=99.97 E-value=2.6e-31 Score=248.16 Aligned_cols=114 Identities=24% Similarity=0.447 Sum_probs=98.4
Q ss_pred hhhhHHHHHHHHHHhcCCCCCcccCCCCCCCCeeEccceeEEecccccccccCC-c--eeeecccCCCCHHHHHHHHhhc
Q 045661 5 IKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT-H--RVKSISMAKFSAEEVSALQAAG 81 (719)
Q Consensus 5 ~kedernekiLr~Llk~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGIHRsLG-H--RVKSITLDtWT~EEVe~Mq~gG 81 (719)
+..++..+++|+.|++.|+|++|||||+++|+|||++||||||++|+||||+|| | |||||+||+|++++|++|+.+|
T Consensus 17 ~~~~~~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~G 96 (138)
T 2owa_A 17 FVSDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGG 96 (138)
T ss_dssp CBCHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhc
Confidence 445567788889999999999999999999999999999999999999999998 5 9999999999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHhhccc
Q 045661 82 NERARQIYLKDWDPQRNSYPDGRIRDFIKHVYVDRRY 118 (719)
Q Consensus 82 N~rAN~IwEa~~pp~rkp~PDS~re~FIRaKYVdKrF 118 (719)
|.++|++||+++..........+.+.||..||++|.-
T Consensus 97 N~~an~~~e~~~~~~~~~~~~~kY~s~~a~~Y~~kL~ 133 (138)
T 2owa_A 97 NGRARNYFKQVLGVNFSPKTKEYASSICGRQYKQILD 133 (138)
T ss_dssp HHHHHHHHHHHTCTTCCGGGCHHHHSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHhhHHHHHHHHHHH
Confidence 9999999998643321111123778999999998753
No 7
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=1.2e-30 Score=246.47 Aligned_cols=105 Identities=27% Similarity=0.539 Sum_probs=94.3
Q ss_pred CCcchhhhHHHHHHHHHHhcCCCCCcccCCCCCCCCeeEccceeEEecccccccccCC-c--eeeecccCC-CCHHHHHH
Q 045661 1 MGNKIKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT-H--RVKSISMAK-FSAEEVSA 76 (719)
Q Consensus 1 M~sr~kedernekiLr~Llk~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGIHRsLG-H--RVKSITLDt-WT~EEVe~ 76 (719)
|++..| ++++++|+.|++.|+|++|||||+++|+|||+|||||||++|+||||.|| | |||||+||+ |++++|++
T Consensus 8 m~~~~k--~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~ 85 (149)
T 2crw_A 8 MGDPSK--QDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRC 85 (149)
T ss_dssp SCCCCH--HHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHH
T ss_pred cccCCH--HHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHH
Confidence 666544 56799999999999999999999999999999999999999999999998 5 999999996 99999999
Q ss_pred HHhhchHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHhhcc
Q 045661 77 LQAAGNERARQIYLKDWDPQRNSYPDGRIRDFIKHVYVDRR 117 (719)
Q Consensus 77 Mq~gGN~rAN~IwEa~~pp~rkp~PDS~re~FIRaKYVdKr 117 (719)
|+.+||.++|+|||+++... .+|+.||..+.
T Consensus 86 m~~~GN~~an~~~e~~~~~~----------~~i~~KY~s~~ 116 (149)
T 2crw_A 86 MQVGGNASASSFFHQHGCST----------NDTNAKYNSRA 116 (149)
T ss_dssp HHTTCHHHHHHHHHHHCCCC----------CCHHHHTTSHH
T ss_pred HHHHhhHHHHHHHHhcCCCC----------cchhhCcCcHH
Confidence 99999999999999988542 35788887754
No 8
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.96 E-value=1e-29 Score=239.80 Aligned_cols=113 Identities=26% Similarity=0.496 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHhcCCCCCcccCCCCCCCCeeEccceeEEecccccccccCC-c--eeeecccCCCCHHHHHHHHhhchH
Q 045661 7 EDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT-H--RVKSISMAKFSAEEVSALQAAGNE 83 (719)
Q Consensus 7 edernekiLr~Llk~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGIHRsLG-H--RVKSITLDtWT~EEVe~Mq~gGN~ 83 (719)
.+++++++|+.|++.|+|++|+|||+++|+|||++||||||++|+||||+|| | |||||+||+|++++|++|+.+||.
T Consensus 21 ~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~ 100 (147)
T 3dwd_A 21 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 100 (147)
T ss_dssp -CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhH
Confidence 4678999999999999999999999999999999999999999999999998 4 999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCc-----h----HHHHHHHHHHhhccccC
Q 045661 84 RARQIYLKDWDPQRNSYPD-----G----RIRDFIKHVYVDRRYAG 120 (719)
Q Consensus 84 rAN~IwEa~~pp~rkp~PD-----S----~re~FIRaKYVdKrF~~ 120 (719)
++|+|||++.... ...+. + ..++-|+++++-|.|..
T Consensus 101 ~an~~~ea~~~~~-~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 101 KFREFLESQEDYD-PCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp HHHHHHHTSTTCC-TTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhCCCCC-CCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 9999999864221 11110 0 45667777777777754
No 9
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.95 E-value=3.4e-28 Score=242.25 Aligned_cols=118 Identities=24% Similarity=0.481 Sum_probs=105.1
Q ss_pred hhhHHHHHHHHHHhcCCCCCcccCCCCCCCCeeEccceeEEecccccccccCC-c--eeeecccCCCCHHHHHHHHhhch
Q 045661 6 KEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT-H--RVKSISMAKFSAEEVSALQAAGN 82 (719)
Q Consensus 6 kedernekiLr~Llk~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGIHRsLG-H--RVKSITLDtWT~EEVe~Mq~gGN 82 (719)
..++..+++|+.|++.|+|++|+|||+++|+|||++||||||++|+||||.|| | ||||++||.|+.+++.+|+.+||
T Consensus 24 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN 103 (301)
T 2b0o_E 24 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 103 (301)
T ss_dssp ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCC
Confidence 35677899999999999999999999999999999999999999999999998 4 99999999999999999999999
Q ss_pred HHHHHHHhhcCCCC--CCCCCch---HHHHHHHHHHhhccccCCCC
Q 045661 83 ERARQIYLKDWDPQ--RNSYPDG---RIRDFIKHVYVDRRYAGEKT 123 (719)
Q Consensus 83 ~rAN~IwEa~~pp~--rkp~PDS---~re~FIRaKYVdKrF~~~~~ 123 (719)
.++|++||+.++.. .++.+++ .+++||+.||++++|..+..
T Consensus 104 ~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~~~ 149 (301)
T 2b0o_E 104 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCT 149 (301)
T ss_dssp HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCCCC
T ss_pred HHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcccC
Confidence 99999999998774 3444433 78999999999999987644
No 10
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=1.2e-28 Score=259.57 Aligned_cols=118 Identities=25% Similarity=0.500 Sum_probs=105.7
Q ss_pred hhhHHHHHHHHHHhcCCCCCcccCCCCCCCCeeEccceeEEecccccccccCC-c--eeeecccCCCCHHHHHHHHhhch
Q 045661 6 KEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT-H--RVKSISMAKFSAEEVSALQAAGN 82 (719)
Q Consensus 6 kedernekiLr~Llk~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGIHRsLG-H--RVKSITLDtWT~EEVe~Mq~gGN 82 (719)
+.++.++++|+.|++.|+|+.|+|||+++|+|+|+|+|||||++|+||||+|| | ||||++||.|+.+++++|+.+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN 84 (497)
T 3lvq_E 5 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 84 (497)
T ss_dssp ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCH
T ss_pred hhHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhh
Confidence 34678999999999999999999999999999999999999999999999998 4 99999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCC--ch---HHHHHHHHHHhhccccCCCC
Q 045661 83 ERARQIYLKDWDPQRNSYP--DG---RIRDFIKHVYVDRRYAGEKT 123 (719)
Q Consensus 83 ~rAN~IwEa~~pp~rkp~P--DS---~re~FIRaKYVdKrF~~~~~ 123 (719)
..+|.+||+.++....+.| .+ .+++||++||++++|..+..
T Consensus 85 ~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~~ 130 (497)
T 3lvq_E 85 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCT 130 (497)
T ss_dssp HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCCC
T ss_pred HHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhccccccccc
Confidence 9999999999976443333 22 78999999999999998765
No 11
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.94 E-value=2.7e-28 Score=229.51 Aligned_cols=89 Identities=25% Similarity=0.587 Sum_probs=83.3
Q ss_pred hhhHHHHHHHHHHhcCCCCCcccCCCCCCCCeeEccceeEEecccccccccCC-c--eeeecccCC-CCHHHHHHHHhhc
Q 045661 6 KEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT-H--RVKSISMAK-FSAEEVSALQAAG 81 (719)
Q Consensus 6 kedernekiLr~Llk~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGIHRsLG-H--RVKSITLDt-WT~EEVe~Mq~gG 81 (719)
+.+++.+++|+.|++.|+|++|+|||+++|+|||++||||||++|+||||+|| | +||||+||+ |++++|++|+.+|
T Consensus 19 ~~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~G 98 (144)
T 2p57_A 19 PNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGG 98 (144)
T ss_dssp CCHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhC
Confidence 34567889999999999999999999999999999999999999999999998 4 999999996 9999999999999
Q ss_pred hHHHHHHHhhcCC
Q 045661 82 NERARQIYLKDWD 94 (719)
Q Consensus 82 N~rAN~IwEa~~p 94 (719)
|.++|+||+++..
T Consensus 99 N~~an~~~e~~g~ 111 (144)
T 2p57_A 99 NANATAFFRQHGC 111 (144)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998743
No 12
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.94 E-value=7e-28 Score=237.10 Aligned_cols=115 Identities=27% Similarity=0.544 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCCCCCCeeEccceeEEecccccccccCC-c--eeeecccCCCCHHHHHHHHhhchHHH
Q 045661 9 ERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT-H--RVKSISMAKFSAEEVSALQAAGNERA 85 (719)
Q Consensus 9 ernekiLr~Llk~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGIHRsLG-H--RVKSITLDtWT~EEVe~Mq~gGN~rA 85 (719)
|+++++|+.|++.|+|+.|||||+.+|+|+|++||+|||++|+||||.|| | +|||++||.|+.+++..|+.+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 57899999999999999999999999999999999999999999999998 4 99999999999999999999999999
Q ss_pred HHHHhhcCCCCC--CCCCch---HHHHHHHHHHhhccccCCCC
Q 045661 86 RQIYLKDWDPQR--NSYPDG---RIRDFIKHVYVDRRYAGEKT 123 (719)
Q Consensus 86 N~IwEa~~pp~r--kp~PDS---~re~FIRaKYVdKrF~~~~~ 123 (719)
|+|||+.++... ++.+.+ .+++||+.||+.++|..+..
T Consensus 82 n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~ 124 (278)
T 1dcq_A 82 NEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKH 124 (278)
T ss_dssp HHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCS
T ss_pred HHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccc
Confidence 999999987643 444433 78999999999999998765
No 13
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.93 E-value=1.8e-27 Score=227.55 Aligned_cols=88 Identities=30% Similarity=0.536 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHhcC-CCCCcccCCCCCCCCeeEccceeEEecccccccccCC-c--eeeecccCCCCHHHHHHHHhhch
Q 045661 7 EDERIEGIIRGLLKL-PENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT-H--RVKSISMAKFSAEEVSALQAAGN 82 (719)
Q Consensus 7 edernekiLr~Llk~-PgNK~CADCGA~~PqWASvNfGVFVCi~CSGIHRsLG-H--RVKSITLDtWT~EEVe~Mq~gGN 82 (719)
++...+++|++|++. |+|++|||||+++|+|||++||||||++|+||||.|| | |||||+||+|++++|++|+.+||
T Consensus 4 m~a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN 83 (163)
T 3sub_A 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGN 83 (163)
T ss_dssp HHHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCH
T ss_pred ccHHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCH
Confidence 567789999999985 8999999999999999999999999999999999998 4 99999999999999999999999
Q ss_pred HHHHHHHhhcCC
Q 045661 83 ERARQIYLKDWD 94 (719)
Q Consensus 83 ~rAN~IwEa~~p 94 (719)
.++|++|+++..
T Consensus 84 ~~an~~~e~~g~ 95 (163)
T 3sub_A 84 KKCQTYLENYGI 95 (163)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 999999998753
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.3e-26 Score=233.85 Aligned_cols=91 Identities=29% Similarity=0.557 Sum_probs=82.9
Q ss_pred hhhhHHHHHHHHHHhcCCCCCcccCCCCCCCCeeEccceeEEecccccccccCC-c--eeeecccCCCCHHHHHHHHhhc
Q 045661 5 IKEDERIEGIIRGLLKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFT-H--RVKSISMAKFSAEEVSALQAAG 81 (719)
Q Consensus 5 ~kedernekiLr~Llk~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGIHRsLG-H--RVKSITLDtWT~EEVe~Mq~gG 81 (719)
...+++++++|+.|++.++|++|||||+++|+|||+|||||||++|+||||+|| | +||||+||+|++++|++|+.+|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~g 97 (329)
T 3o47_A 18 GMASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGG 97 (329)
T ss_dssp -----CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCC
T ss_pred ccCCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhC
Confidence 345688999999999999999999999999999999999999999999999998 4 8999999999999999999999
Q ss_pred hHHHHHHHhhcCCC
Q 045661 82 NERARQIYLKDWDP 95 (719)
Q Consensus 82 N~rAN~IwEa~~pp 95 (719)
|.++|++||+.+..
T Consensus 98 N~~~n~~~e~~~~~ 111 (329)
T 3o47_A 98 NAKFREFLESQEDY 111 (329)
T ss_dssp HHHHHHHHHTCSSC
T ss_pred cHHHHHHHHhcCCC
Confidence 99999999997644
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=84.53 E-value=0.43 Score=46.80 Aligned_cols=49 Identities=18% Similarity=0.463 Sum_probs=37.9
Q ss_pred CCCCCcccCCCCCCCCeeEccceeEEecccccccccCCceeeecccCCCCHHHHHHHHhhch
Q 045661 21 LPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHREFTHRVKSISMAKFSAEEVSALQAAGN 82 (719)
Q Consensus 21 ~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGIHRsLGHRVKSITLDtWT~EEVe~Mq~gGN 82 (719)
.|.-..|+.||.....|.+...|.++|..|...+ .++.+++..|+.+-.
T Consensus 147 ~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~-------------~l~~~~l~~l~~l~~ 195 (244)
T 1u5k_A 147 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP-------------PYPPAVLDFLRHAVR 195 (244)
T ss_dssp CCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC-------------CCCHHHHHHHHHTTT
T ss_pred CCCcCccccCCCCCCCcEecccCEEECcccCCCC-------------CCCHHHHHHHHHHHh
Confidence 3555799999988667889999999999996432 477888888875433
No 16
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=47.45 E-value=17 Score=33.37 Aligned_cols=27 Identities=4% Similarity=0.053 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHhhchHHHHHHHhhcCC
Q 045661 68 KFSAEEVSALQAAGNERARQIYLKDWD 94 (719)
Q Consensus 68 tWT~EEVe~Mq~gGN~rAN~IwEa~~p 94 (719)
.|+++|+++|+.+++..+-.|-.+++-
T Consensus 132 ~w~~~ei~ll~~lA~ql~iAi~qa~l~ 158 (171)
T 4glq_A 132 QWQEIEIDQFSELASTGSLVLERLHFL 158 (171)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999988877663
No 17
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=43.65 E-value=20 Score=30.63 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=31.7
Q ss_pred HHHHHHHH-hcCCCCCcccCCCCCCCCeeEccceeEEecccccc
Q 045661 11 IEGIIRGL-LKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGV 53 (719)
Q Consensus 11 nekiLr~L-lk~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGI 53 (719)
.++.++++ ........|.-||.....+.. .||+.|..|--.
T Consensus 13 lRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~~ 54 (73)
T 1ffk_W 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGYK 54 (73)
T ss_pred HHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCcE
Confidence 45666666 567788999999987776665 599999999654
No 18
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=39.86 E-value=15 Score=34.98 Aligned_cols=34 Identities=29% Similarity=0.646 Sum_probs=29.0
Q ss_pred CCCcccCCCCC-----CCCeeEccceeEEeccccccccc
Q 045661 23 ENRRCINCNCL-----GPQYVCTTFLTFVCTNCSGVHRE 56 (719)
Q Consensus 23 gNK~CADCGA~-----~PqWASvNfGVFVCi~CSGIHRs 56 (719)
+...|+-|+.+ +..-.|..-...||..|...++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~ 105 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPE 105 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCC
Confidence 57899999985 67778899999999999987765
No 19
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=35.46 E-value=7.5 Score=35.51 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=24.6
Q ss_pred CCCcccCCCCCCCCe-eEccceeEEeccccccc
Q 045661 23 ENRRCINCNCLGPQY-VCTTFLTFVCTNCSGVH 54 (719)
Q Consensus 23 gNK~CADCGA~~PqW-ASvNfGVFVCi~CSGIH 54 (719)
+...|.+||...-.| ..-+|++-||..|....
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~ 36 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhcccc
Confidence 556899999854443 45699999999998653
No 20
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=32.58 E-value=23 Score=29.69 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=29.3
Q ss_pred CCCCcccCCCC-CCCCeeEccceeEEecccccccccC
Q 045661 22 PENRRCINCNC-LGPQYVCTTFLTFVCTNCSGVHREF 57 (719)
Q Consensus 22 PgNK~CADCGA-~~PqWASvNfGVFVCi~CSGIHRsL 57 (719)
.+...|++|+. .-|.|-.-..|-.||-.|.-..+..
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~ 43 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLH 43 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHc
Confidence 45689999996 6789999999999999997655443
No 21
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=32.49 E-value=13 Score=29.24 Aligned_cols=36 Identities=25% Similarity=0.586 Sum_probs=29.1
Q ss_pred CCCcccCCCC-CCCCeeEccceeEEecccccccccCC
Q 045661 23 ENRRCINCNC-LGPQYVCTTFLTFVCTNCSGVHREFT 58 (719)
Q Consensus 23 gNK~CADCGA-~~PqWASvNfGVFVCi~CSGIHRsLG 58 (719)
..+.|.+|+. .-|.|=.-..|..||-.|.-.++..+
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~ 39 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNG 39 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcC
Confidence 5689999997 56889988899999999987555433
No 22
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=31.14 E-value=23 Score=27.33 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=26.4
Q ss_pred CcccCCCC-CCCCeeEccceeEEeccccccccc
Q 045661 25 RRCINCNC-LGPQYVCTTFLTFVCTNCSGVHRE 56 (719)
Q Consensus 25 K~CADCGA-~~PqWASvNfGVFVCi~CSGIHRs 56 (719)
+.|.+|+. .-|.|=.-..|-.||-.|.-..|.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~ 34 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKL 34 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHH
Confidence 57999997 568999999999999999865444
No 23
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=28.34 E-value=32 Score=31.95 Aligned_cols=50 Identities=30% Similarity=0.463 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHHhc------CCCCCcccCCCCC-----CCCeeEccceeEEecccccccc
Q 045661 6 KEDERIEGIIRGLLK------LPENRRCINCNCL-----GPQYVCTTFLTFVCTNCSGVHR 55 (719)
Q Consensus 6 kedernekiLr~Llk------~PgNK~CADCGA~-----~PqWASvNfGVFVCi~CSGIHR 55 (719)
+|+++..++...|.. ..+...|+-|+.. +..-.|..-...||.+|.+.+.
T Consensus 31 ~E~~ri~kL~~~l~~~k~~~~~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~ 91 (134)
T 1zbd_B 31 MEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETS 91 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECC
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCccccccCCCcccccCCCCCCCCCCcccccccCCccC
Confidence 444544444444332 2467899999974 3455678888899999998773
No 24
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=27.49 E-value=20 Score=32.62 Aligned_cols=33 Identities=24% Similarity=0.634 Sum_probs=27.0
Q ss_pred CCcccCCCC-CCCCeeEccceeEEeccccccccc
Q 045661 24 NRRCINCNC-LGPQYVCTTFLTFVCTNCSGVHRE 56 (719)
Q Consensus 24 NK~CADCGA-~~PqWASvNfGVFVCi~CSGIHRs 56 (719)
-+.|++||+ .-|.|=.-..|-+||-.|.-.++.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl 38 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKM 38 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHH
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhh
Confidence 478999997 578999888999999999765543
No 25
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=26.81 E-value=22 Score=29.57 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=30.2
Q ss_pred CCCCCcccCCCC-CCCCeeEccceeEEecccccccccCC
Q 045661 21 LPENRRCINCNC-LGPQYVCTTFLTFVCTNCSGVHREFT 58 (719)
Q Consensus 21 ~PgNK~CADCGA-~~PqWASvNfGVFVCi~CSGIHRsLG 58 (719)
......|.+|+. .-|.|=.-..|-.||-.|.-.++..+
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~ 42 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHN 42 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcC
Confidence 346789999997 56899998899999999986555443
No 26
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=26.51 E-value=13 Score=35.27 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=22.2
Q ss_pred CCCCCcccCCCCCCCC-eeEccceeEEeccccccc
Q 045661 21 LPENRRCINCNCLGPQ-YVCTTFLTFVCTNCSGVH 54 (719)
Q Consensus 21 ~PgNK~CADCGA~~Pq-WASvNfGVFVCi~CSGIH 54 (719)
...-..|.+||.+=|. -.-.-=++-+|+.|...|
T Consensus 108 ~g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~ 142 (151)
T 1tjl_A 108 DEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLA 142 (151)
T ss_dssp TTCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHH
T ss_pred CCCCceeCCCCCcchHHHHhcCCCcchhHHHHHHH
Confidence 3456899999986332 112223567899998765
No 27
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=25.76 E-value=49 Score=25.78 Aligned_cols=43 Identities=19% Similarity=0.374 Sum_probs=31.2
Q ss_pred CCCCcccCCCCCCCCeeEccceeEEecccc--cccccCCceeeeccc
Q 045661 22 PENRRCINCNCLGPQYVCTTFLTFVCTNCS--GVHREFTHRVKSISM 66 (719)
Q Consensus 22 PgNK~CADCGA~~PqWASvNfGVFVCi~CS--GIHRsLGHRVKSITL 66 (719)
.....|..-....-.+.|..=...||..|. +-|| +|+|..|.-
T Consensus 6 ~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~--~H~~~~l~~ 50 (64)
T 2d8u_A 6 SGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK--ACEVAPLQS 50 (64)
T ss_dssp CCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT--SSCEECTTT
T ss_pred CCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC--CCCeeCHHH
Confidence 445667776445567888888999999996 5787 577777654
No 28
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=24.61 E-value=57 Score=24.72 Aligned_cols=41 Identities=24% Similarity=0.412 Sum_probs=31.3
Q ss_pred CCCCcccCCCCCCCCeeEccceeEEecccc--cccccCCceeeecc
Q 045661 22 PENRRCINCNCLGPQYVCTTFLTFVCTNCS--GVHREFTHRVKSIS 65 (719)
Q Consensus 22 PgNK~CADCGA~~PqWASvNfGVFVCi~CS--GIHRsLGHRVKSIT 65 (719)
.++..|..-+ ..-.|.+..=...||..|. +-|| +|+|..|.
T Consensus 6 ~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~--~H~~~~l~ 48 (53)
T 2did_A 6 SGESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR--AHTVVPLS 48 (53)
T ss_dssp CSCCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT--TSCEEECC
T ss_pred cCCCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC--CCcEeeHH
Confidence 3456787776 5678889999999999997 5676 57777665
No 29
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=24.43 E-value=54 Score=26.88 Aligned_cols=42 Identities=24% Similarity=0.524 Sum_probs=31.1
Q ss_pred CCCCcccCCCCCCCCeeEccceeEEecccc--cccccCCceeeecc
Q 045661 22 PENRRCINCNCLGPQYVCTTFLTFVCTNCS--GVHREFTHRVKSIS 65 (719)
Q Consensus 22 PgNK~CADCGA~~PqWASvNfGVFVCi~CS--GIHRsLGHRVKSIT 65 (719)
..+..|..-+...-.+.|..=+..||..|. +-|| +|+|..|.
T Consensus 16 ~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~--~H~~~~l~ 59 (84)
T 2dja_A 16 LRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR--DHQVASLN 59 (84)
T ss_dssp SSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT--TCCBCCCC
T ss_pred CCCCcCcCcCCccccEEcCCCCceEcccCcCCCCCC--CCCccCHH
Confidence 345677776556678889999999999997 5676 46666654
No 30
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=23.13 E-value=52 Score=26.40 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=22.2
Q ss_pred CCcccCCCCCCCCeeEccceeEEecccccccc
Q 045661 24 NRRCINCNCLGPQYVCTTFLTFVCTNCSGVHR 55 (719)
Q Consensus 24 NK~CADCGA~~PqWASvNfGVFVCi~CSGIHR 55 (719)
-..|-+|+...- -....-|..||..|--|-.
T Consensus 11 ~~~Cp~C~~~~l-v~D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 11 RVTCPNHPDAIL-VEDYRAGDMICPECGLVVG 41 (58)
T ss_dssp CCSBTTBSSSCC-EECSSSCCEECTTTCCEEC
T ss_pred cccCcCCCCCce-eEeCCCCeEEeCCCCCEEe
Confidence 347999998652 2245679999999976643
No 31
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=22.07 E-value=28 Score=30.21 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=28.8
Q ss_pred HHHHHHHH-hcCCCCCcccCCCCCCCCeeEccceeEEeccccccc
Q 045661 11 IEGIIRGL-LKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGVH 54 (719)
Q Consensus 11 nekiLr~L-lk~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGIH 54 (719)
.++.+.+| ......-.|..||....- ....|++.|..|-...
T Consensus 13 lRk~vk~ie~~q~~~y~Cp~CG~~~v~--r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 13 SRRRVAEIESEMNEDHACPNCGEDRVD--RQGTGIWQCSYCDYKF 55 (83)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEEEE--EEETTEEEETTTCCEE
T ss_pred HHHHHHHHHHhccccCcCCCCCCccee--ccCCCeEECCCCCCEe
Confidence 34555555 445568899999974332 3457999999998653
No 32
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=21.90 E-value=28 Score=32.28 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=28.8
Q ss_pred HHHHHHHH-hcCCCCCcccCCCCCCCCeeEccceeEEecccccc
Q 045661 11 IEGIIRGL-LKLPENRRCINCNCLGPQYVCTTFLTFVCTNCSGV 53 (719)
Q Consensus 11 nekiLr~L-lk~PgNK~CADCGA~~PqWASvNfGVFVCi~CSGI 53 (719)
.++.+.++ ......-.|..||......+ ..||+.|..|--+
T Consensus 46 lRK~vkkiE~~q~akytCPfCGk~~vKR~--avGIW~C~~Cgk~ 87 (116)
T 3cc2_Z 46 SRRRVAEIESEMNEDHACPNCGEDRVDRQ--GTGIWQCSYCDYK 87 (116)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEEEEEE--ETTEEEETTTCCE
T ss_pred HHHHHHHHHHHhccCCcCCCCCCceeEec--CceeEECCCCCCE
Confidence 34555555 45567789999997554444 4699999999754
No 33
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=21.19 E-value=23 Score=30.67 Aligned_cols=31 Identities=13% Similarity=0.442 Sum_probs=24.5
Q ss_pred CCCcccCCCCCCCCeeEccceeEEeccccccccc
Q 045661 23 ENRRCINCNCLGPQYVCTTFLTFVCTNCSGVHRE 56 (719)
Q Consensus 23 gNK~CADCGA~~PqWASvNfGVFVCi~CSGIHRs 56 (719)
|++.|.-||...- ...||++.|..|++..|-
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFRR 31 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFKR 31 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhhh
Confidence 5788999997653 358999999999997663
No 34
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=20.48 E-value=16 Score=33.26 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=20.6
Q ss_pred CCcccCCCCCCCC-eeEccceeEEeccccccc
Q 045661 24 NRRCINCNCLGPQ-YVCTTFLTFVCTNCSGVH 54 (719)
Q Consensus 24 NK~CADCGA~~Pq-WASvNfGVFVCi~CSGIH 54 (719)
--.|.+||.+=|. -.-.--++.+|+.|...+
T Consensus 56 yG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~ 87 (108)
T 2kgo_A 56 LDECEECGAPIPQARREAIPGVRLCIHCQQEK 87 (108)
T ss_dssp CSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHH
T ss_pred CceecccCCcccHHHHhcCCCccccHHHHHHH
Confidence 5799999986332 222233567899998754
Done!