BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045670
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 17/230 (7%)
Query: 51 WRAAFTELVATA-FLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMV--TVPLSG 107
WRAA E +AT FL T+ T I ++ V L+ IA +F++V T +SG
Sbjct: 38 WRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISG 97
Query: 108 GHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLIA 167
GH++P TF L V+L RA Y++AQCLG+I G ++ + M GG
Sbjct: 98 GHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMK---GPYNQFGG---G 151
Query: 168 GNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAG-AMAIAVF 226
N + G + TAL E TFV+++ + KR ++ + ++ + G A+ +
Sbjct: 152 ANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHL 211
Query: 227 VSITVTQKPGYAGVGLNPARCLGPALL-HGGPLWKGHWVFWVGPFLACVV 275
+I +T G G+NPAR G A++ + +W W+FWVGPF+ V
Sbjct: 212 ATIPIT------GTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAV 255
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 17/230 (7%)
Query: 51 WRAAFTELVATA-FLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMV--TVPLSG 107
WRAA E +AT FL T+ T I ++ V L+ IA +F++V T +SG
Sbjct: 61 WRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISG 120
Query: 108 GHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLIA 167
GH++P TF L V+L RA Y++AQCLG+I G ++ + M GG
Sbjct: 121 GHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMK---GPYNQFGG---G 174
Query: 168 GNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAG-AMAIAVF 226
N + G + TAL E TFV+++ + KR ++ + ++ + G A+ +
Sbjct: 175 ANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHL 234
Query: 227 VSITVTQKPGYAGVGLNPARCLGPALL-HGGPLWKGHWVFWVGPFLACVV 275
+I +T G G+NPAR G A++ + +W W+FWVGPF+ V
Sbjct: 235 ATIPIT------GTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAV 278
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 115/232 (49%), Gaps = 17/232 (7%)
Query: 49 KMWRAAFTELVATA-FLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMV--TVPL 105
WRAA E +AT FL T+ T I ++ V L+ IA +F++V T +
Sbjct: 36 SFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGI 95
Query: 106 SGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCL 165
SGGH++P TF L V+L RA Y++AQCLG+I G ++ + M GG
Sbjct: 96 SGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMK---GPYNQFGG-- 150
Query: 166 IAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAG-AMAIA 224
N + G + TAL E TFV+++ + KR ++ + ++ + G A+ +
Sbjct: 151 -GANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMV 209
Query: 225 VFVSITVTQKPGYAGVGLNPARCLGPALL-HGGPLWKGHWVFWVGPFLACVV 275
+I +T G G+NPAR G A++ + +W W+FWVGPF+ V
Sbjct: 210 HLATIPIT------GTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAV 255
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 114/230 (49%), Gaps = 17/230 (7%)
Query: 51 WRAAFTELVATA-FLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMV--TVPLSG 107
WRAA E +AT FL T+ T I ++ V L+ IA +F++V T +SG
Sbjct: 61 WRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISG 120
Query: 108 GHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLIA 167
GH++P TF L V L RA Y++AQCLG+I G ++ + M GG
Sbjct: 121 GHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMK---GPYNQFGG---G 174
Query: 168 GNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAG-AMAIAVF 226
N + G + TAL E TFV+++ + KR ++ + ++ + G A+ +
Sbjct: 175 ANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHL 234
Query: 227 VSITVTQKPGYAGVGLNPARCLGPALL-HGGPLWKGHWVFWVGPFLACVV 275
+I +T G G+NPAR G A++ + +W W+FWVGPF+ V
Sbjct: 235 ATIPIT------GTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAV 278
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 114/230 (49%), Gaps = 17/230 (7%)
Query: 51 WRAAFTELVATA-FLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMV--TVPLSG 107
WRAA E +AT FL T+ T I ++ V L+ IA +F++V T +SG
Sbjct: 57 WRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISG 116
Query: 108 GHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLIA 167
GH++P TF L V L RA Y++AQCLG+I G ++ + M GG
Sbjct: 117 GHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMK---GPYNQFGG---G 170
Query: 168 GNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAG-AMAIAVF 226
N + G + TAL E TFV+++ + KR ++ + ++ + G A+ +
Sbjct: 171 ANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHL 230
Query: 227 VSITVTQKPGYAGVGLNPARCLGPALL-HGGPLWKGHWVFWVGPFLACVV 275
+I +T G G+NPAR G A++ + +W W+FWVGPF+ V
Sbjct: 231 ATIPIT------GTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAV 274
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 30/243 (12%)
Query: 40 IGFYEFFSPKMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFL 99
+ F ++ W+A E +A L+F L S+ S ++ SE L V + + + F
Sbjct: 41 VAFKGVWTQAFWKAVTAEFLA--MLIFVLL-SVGSTINWGGSENPLPVDMVLISLCFGLS 97
Query: 100 MVTV-----PLSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHN 154
+ T+ +SGGH++P T +++A++ Y+ AQCLG+I+G I+ V +
Sbjct: 98 IATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPS 157
Query: 155 AARRYSLGGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVC 214
LG + GN ++A L++E TF ++F DKR
Sbjct: 158 VVG--GLGVTTVHGN-----LTAGHGLLVELIITFQLVFTIFASCDDKR----------- 199
Query: 215 AIVAGAMAIAVFVSITVTQ--KPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPFLA 272
V G++A+A+ S+ + Y G +NPAR GPA++ G W+ HW++WVGP +
Sbjct: 200 TDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN--WENHWIYWVGPIIG 257
Query: 273 CVV 275
V+
Sbjct: 258 AVL 260
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 30/243 (12%)
Query: 40 IGFYEFFSPKMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFL 99
+ F ++ W+A E +A L+F L S+ S ++ SE L V + + + F
Sbjct: 2 VAFKGVWTQAFWKAVTAEFLA--MLIFVLL-SVGSTINWGGSENPLPVDMVLISLCFGLS 58
Query: 100 MVTV-----PLSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHN 154
+ T+ +SGGH++P T +++A++ Y+ AQCLG+I+G I+ V +
Sbjct: 59 IATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPS 118
Query: 155 AARRYSLGGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVC 214
LG + GN ++A L++E TF ++F DKR
Sbjct: 119 VVG--GLGVTTVHGN-----LTAGHGLLVELIITFQLVFTIFASCDDKR----------- 160
Query: 215 AIVAGAMAIAVFVSITVTQ--KPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPFLA 272
V G++A+A+ S+ + Y G +NPAR GPA++ G W+ HW++WVGP +
Sbjct: 161 TDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN--WENHWIYWVGPIIG 218
Query: 273 CVV 275
V+
Sbjct: 219 AVL 221
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 26/241 (10%)
Query: 40 IGFYEFFSPKMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFL 99
+ F ++ W+A E +A L+F L S+ S ++ SE L V + + + F
Sbjct: 2 VAFKGVWTQAFWKAVTAEFLA--MLIFVLL-SVGSTINWGGSENPLPVDMVLISLCFGLS 58
Query: 100 MVTV-----PLSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHN 154
+ T+ +SGGH++P T +++A++ Y+ AQCLG+I+G I+ V +
Sbjct: 59 IATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPS 118
Query: 155 AARRYSLGGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVC 214
LG + GN ++A L++E TF ++F + + D +R G V
Sbjct: 119 VVG--GLGVTTVHGN-----LTAGHGLLVELIITFQLVFT-IFASCDSKRTDVTGSV--- 167
Query: 215 AIVAGAMAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPFLACV 274
A+AI V+I Y G +NPAR GPA++ G W+ HW++WVGP + V
Sbjct: 168 -----ALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN--WENHWIYWVGPIIGAV 220
Query: 275 V 275
+
Sbjct: 221 L 221
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 121/276 (43%), Gaps = 37/276 (13%)
Query: 44 EFFSPKMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMVTV 103
EF WRA E +AT VF S + + Q + +AF + T+
Sbjct: 4 EFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATL 63
Query: 104 P-----LSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARR 158
+SG H++P T L +++ RA Y++AQC+G+IV I++ + S
Sbjct: 64 AQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITS------ 117
Query: 159 YSLGGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVA 218
SL G + N + G+++ L +E T ++ +A RR ++LG +
Sbjct: 118 -SLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVL--CVLATTDRRRRDLG-------GS 167
Query: 219 GAMAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPFLA---CVV 275
+AI + V++ Y G G+NPAR G A++ + HW+FWVGPF+ V+
Sbjct: 168 APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHN--FSNHWIFWVGPFIGGALAVL 225
Query: 276 YYGF-----AKTLPEEGLVW------EDKFEHDIIN 300
Y F + L + VW E + D IN
Sbjct: 226 IYDFILAPRSSDLTDRVKVWTSGQVEEYDLDADDIN 261
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 118/236 (50%), Gaps = 30/236 (12%)
Query: 51 WRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMVTV-----PL 105
W+A E +A L+F L S+ S ++ +E+ L V + + + F + T+ +
Sbjct: 4 WKAVTAEFLA--MLIFVLL-SLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHI 60
Query: 106 SGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCL 165
SGGH++P T +++A++ Y+ AQCLG+I+G I+ V + LG +
Sbjct: 61 SGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG--GLGVTM 118
Query: 166 IAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGAMAIAV 225
+ GN ++A L++E TF ++F + + D +R V G++A+A+
Sbjct: 119 VHGN-----LTAGHGLLVELIITFQLVFT-IFASCDSKRTD----------VTGSIALAI 162
Query: 226 FVSITVTQ--KPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPFLACVVYYGF 279
S+ + Y G +NPAR GPA++ G W+ HW++WVGP + V+ G
Sbjct: 163 GFSVAIGHLFAINYTGASMNPARSFGPAVIMGN--WENHWIYWVGPIIGAVLAGGL 216
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 110/232 (47%), Gaps = 30/232 (12%)
Query: 43 YEFFSPKMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMVT 102
+E S WRA F E AT F VF + + L +L F +A L+
Sbjct: 2 WELRSASFWRAIFAEFFATLFYVFF---GLGASLRWAPGPLHVLQVALAFGLALATLVQA 58
Query: 103 V-PLSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSL 161
V +SG H++P TF + ++L RA YV+AQ LG++ G ++ SV A R +L
Sbjct: 59 VGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTP--PAVRGNL 116
Query: 162 GGCLIAGNGTSAGISAETALILE--FTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAG 219
A N G+S A I+E T FV+ + +D+RR L G
Sbjct: 117 -----ALNTLHPGVSVGQATIVEIFLTLQFVLC---IFATYDERRNGRL----------G 158
Query: 220 AMAIAVFVSITVTQKPG--YAGVGLNPARCLGPALLHGGPLWKGHWVFWVGP 269
++A+AV S+T+ G Y G G+NPAR PA+L + HWV+WVGP
Sbjct: 159 SVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN--FTNHWVYWVGP 208
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 123/281 (43%), Gaps = 45/281 (16%)
Query: 44 EFFSPKMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAV-----FIIAFLF 98
EF WRA E +A +F SI S L H + AV +AF
Sbjct: 4 EFKKKLFWRAVVAEFLAMILFIFI---SIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGL 60
Query: 99 LMVTVP-----LSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSH 153
+ T+ +SG H++P T L +++ RA Y++AQC+G+IV I++ + S
Sbjct: 61 SIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITS- 119
Query: 154 NAARRYSLGGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVV 213
SL + N + G+++ L +E T ++ +A RR ++LG
Sbjct: 120 ------SLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVL--CVLATTDRRRRDLG---- 167
Query: 214 CAIVAGAMAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPFLA- 272
+G +AI V++ Y G G+NPAR G +++ ++ HW+FWVGPF+
Sbjct: 168 ---GSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHN--FQDHWIFWVGPFIGA 222
Query: 273 --CVVYYGF-----AKTLPEEGLVW------EDKFEHDIIN 300
V+ Y F + L + VW E + D IN
Sbjct: 223 ALAVLIYDFILAPRSSDLTDRVKVWTSGQVEEYDLDADDIN 263
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 108/228 (47%), Gaps = 30/228 (13%)
Query: 47 SPKMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMVTV-PL 105
S WRA F E AT F VF + + L +L F +A L+ V +
Sbjct: 2 SASFWRAIFAEFFATLFYVFF---GLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHI 58
Query: 106 SGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCL 165
SG H++P TF + ++L RA YV+AQ LG++ G ++ SV A R +L
Sbjct: 59 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTP--PAVRGNL---- 112
Query: 166 IAGNGTSAGISAETALILE--FTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGAMAI 223
A N G+S A I+E T FV+ + +D+RR L G++A+
Sbjct: 113 -ALNTLHPGVSVGQATIVEIFLTLQFVLC---IFATYDERRNGRL----------GSVAL 158
Query: 224 AVFVSITVTQKPG--YAGVGLNPARCLGPALLHGGPLWKGHWVFWVGP 269
AV S+T+ G Y G G+NPAR PA+L + HWV+WVGP
Sbjct: 159 AVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN--FTNHWVYWVGP 204
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 107/226 (47%), Gaps = 30/226 (13%)
Query: 49 KMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMVTV-PLSG 107
WRA F E AT F VF + + L +L F +A L+ V +SG
Sbjct: 2 SFWRAIFAEFFATLFYVFF---GLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISG 58
Query: 108 GHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLIA 167
H++P TF + ++L RA YV+AQ LG++ G ++ SV A R +L A
Sbjct: 59 AHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTP--PAVRGNL-----A 111
Query: 168 GNGTSAGISAETALILE--FTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGAMAIAV 225
N G+S A I+E T FV+ + +D+RR L G++A+AV
Sbjct: 112 LNTLHPGVSVGQATIVEIFLTLQFVLC---IFATYDERRNGRL----------GSVALAV 158
Query: 226 FVSITVTQKPG--YAGVGLNPARCLGPALLHGGPLWKGHWVFWVGP 269
S+T+ G Y G G+NPAR PA+L + HWV+WVGP
Sbjct: 159 GFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN--FTNHWVYWVGP 202
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 109/232 (46%), Gaps = 30/232 (12%)
Query: 43 YEFFSPKMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMVT 102
+E S WRA E A+ F VF + + L +L F +A L+
Sbjct: 2 WELRSASFWRAICAEFFASLFYVFF---GLGASLRWAPGPLHVLQVALAFGLALATLVQA 58
Query: 103 V-PLSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSL 161
V +SG H++P TF + ++L RA Y++AQ LG++ G ++ SV A R +L
Sbjct: 59 VGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTP--PAVRGNL 116
Query: 162 GGCLIAGNGTSAGISAETALILE--FTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAG 219
A N G+S A I+E T FV+ + +D+RR L G
Sbjct: 117 -----ALNTLHPGVSVGQATIVEIFLTLQFVLC---IFATYDERRNGRL----------G 158
Query: 220 AMAIAVFVSITVTQKPG--YAGVGLNPARCLGPALLHGGPLWKGHWVFWVGP 269
++A+AV S+T+ G Y G G+NPAR PA+L + HWV+WVGP
Sbjct: 159 SVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN--FTNHWVYWVGP 208
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 112/261 (42%), Gaps = 41/261 (15%)
Query: 52 RAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMVTV-----PLS 106
+A F E +AT VF L S + L I +AF + T+ P+S
Sbjct: 13 KAVFAEFLATLIFVFF-------GLGSALKWPSALPTILQIALAFGLAIGTLAQALGPVS 65
Query: 107 GGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLI 166
GGH++P T + ++L RA YV AQ +G+I G I+ V NA
Sbjct: 66 GGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNA---RGNLAVNA 122
Query: 167 AGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGAMAIAVF 226
N T+ G + LIL F + + D RR + G+ A+++
Sbjct: 123 LNNNTTQGQAMVVELILTFQLALCIF-----ASTDSRRTSPV----------GSPALSIG 167
Query: 227 VSITVTQKPG--YAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPF----LACVVYYGF- 279
+S+T+ G + G +NPAR GPA++ HWVFWVGP LA ++Y+
Sbjct: 168 LSVTLGHLVGIYFTGCSMNPARSFGPAVVMNR-FSPAHWVFWVGPIVGAVLAAILYFYLL 226
Query: 280 ---AKTLPEEGLVWEDKFEHD 297
+ +L E + + +E D
Sbjct: 227 FPNSLSLSERVAIIKGTYEPD 247
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 25/151 (16%)
Query: 132 YVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLIAGNGTSA---GISAETALILEFTCT 188
Y++AQ LG+ G I + +G + G G +A GIS A++ E T
Sbjct: 103 YIIAQLLGAAFGSFIF--------LQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGT 154
Query: 189 FVVLFVGVTIAFDKRRCKELGLVVVCAIVAGAMAIAVFVSITVTQKPGYAGVGLNPARCL 248
F+++ + IA D+R K +++ VAG +T +G LNPAR
Sbjct: 155 FLLMITIMGIAVDERAPKGFAGIIIGLTVAG----------IITTLGNISGSSLNPARTF 204
Query: 249 GPAL----LHGGPLWKGHWVFWVGPFLACVV 275
GP L G LW + ++ +GP + V+
Sbjct: 205 GPYLNDMIFAGTDLWNYYSIYVIGPIVGAVL 235
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 30/198 (15%)
Query: 88 PIAVFIIAFLF-------LMVTVPLSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGS 140
P + +I+F F + +T +SGG+++P VTLA + G
Sbjct: 82 PAQLIMISFGFGFGVMVGVFITYRVSGGNLNPA----------VTLALVLARAIPPFRGI 131
Query: 141 IVGFLIINSVMSHNAARRYSLGGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAF 200
++ F I + M+ A G + N G S L LE T ++ + +A
Sbjct: 132 LMAFTQIVAGMAAAGAASAMTPGEIAFANALGGGASRTRGLFLEAFGTAILCLTVLMLAV 191
Query: 201 DKRRCKELGLVVVCAIVAGAMAIAVFVSITVTQKPGYAGVGLNPARCLGPAL-LHGGPLW 259
+K R V+ A+ IA + I Y G GLNPAR GPA+ P +
Sbjct: 192 EKHRATWFAPFVIGI----ALLIAHLICIY------YTGAGLNPARSFGPAVAARSFPNY 241
Query: 260 KGHWVFWVGPFLACVVYY 277
HW++W+GP L + Y
Sbjct: 242 --HWIYWLGPILGAFLAY 257
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 105 LSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGC 164
+SG H++P T G Y++AQ +G+ +G L+ + + AA LG
Sbjct: 77 ISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATVGGLGAT 136
Query: 165 LIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGAMAIA 224
GI A++ E TF+++ V + +A D+R +V+ V G
Sbjct: 137 -----APFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGLTVGG----- 186
Query: 225 VFVSITVTQKPGYAGVGLNPARCLGPAL---LHGGPLWKGHWVFWVGPFLACV 274
+T G LNPAR GP L L G LW+ ++ +GP + V
Sbjct: 187 -----IITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAV 234
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 17/167 (10%)
Query: 105 LSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGC 164
+SGGH +P T G YV+AQ +G IV ++ + S + G
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 165 LIAGNG--TSAGISAETALILEF--TCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGA 220
G G + G S +AL++E + F+++ G T F + + + C ++
Sbjct: 120 ASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLACTLIH-- 177
Query: 221 MAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWV 267
+SI VT +NPAR A+ GG + W FWV
Sbjct: 178 -----LISIPVTNTS------VNPARSTAVAIFQGGWALEQLWFFWV 213
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 17/167 (10%)
Query: 105 LSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGC 164
+SGGH +P T G YV+AQ +G IV ++ + S + G
Sbjct: 57 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 116
Query: 165 LIAGNG--TSAGISAETALILEF--TCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGA 220
G G + G S +AL++E + F+++ G T F + + + A
Sbjct: 117 ASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGL-------A 169
Query: 221 MAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWV 267
+ + +SI VT +NPAR A+ GG + W FWV
Sbjct: 170 LTLIHLISIPVTNTS------VNPARSTAVAIFQGGWALEQLWFFWV 210
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 17/167 (10%)
Query: 105 LSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGC 164
+SGGH +P T G YV+AQ +G IV ++ + S + G
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 165 LIAGNG--TSAGISAETALILEF--TCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGA 220
G G + G S +AL++E + F+++ G T F + + + A
Sbjct: 120 ASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGL-------A 172
Query: 221 MAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWV 267
+ + +SI VT +NPAR A+ GG + W FWV
Sbjct: 173 LTLIHLISIPVTNTS------VNPARSTAVAIFQGGWALEQLWFFWV 213
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 17/167 (10%)
Query: 105 LSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGC 164
+SGGH +P T G YV+AQ +G IV ++ + S + G
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 165 LIAGNG--TSAGISAETALILEF--TCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGA 220
G G + G S +AL++E + F+++ G T F + + + ++
Sbjct: 120 ASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIG-- 177
Query: 221 MAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWV 267
+SI VT +NPAR A+ GG + W FWV
Sbjct: 178 -----LISIPVTN------FSVNPARSTAVAIFQGGWALEQLWFFWV 213
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 17/167 (10%)
Query: 105 LSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGC 164
+SGGH +P T G YV+AQ +G IV ++ + S + G
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 165 LIAGNG--TSAGISAETALILEF--TCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGA 220
G G + G S +AL++E + F+++ G T F + + + ++
Sbjct: 120 ASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIG-- 177
Query: 221 MAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWV 267
+SI VT +NPAR A+ GG + W FWV
Sbjct: 178 -----LISIPVTN------FSVNPARSTAVAIFQGGWALEQLWFFWV 213
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 17/167 (10%)
Query: 105 LSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGC 164
+SGGH +P T G YV+AQ +G IV ++ + S + G
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 165 LIAGNG--TSAGISAETALILEF--TCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGA 220
G G + G S +AL++E + F+++ G T F + + + A
Sbjct: 120 ASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGL-------A 172
Query: 221 MAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWV 267
+ + +SI VT +NPAR A+ GG + W FWV
Sbjct: 173 LTLIHLISIPVTN------CSVNPARSTAVAIFQGGWALEQLWFFWV 213
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 17/167 (10%)
Query: 105 LSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGC 164
+SGGH +P T G YV+AQ +G IV ++ + S + G
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 165 LIAGNG--TSAGISAETALILEF--TCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGA 220
G G + G S +AL++E + F+++ G T F + + + A
Sbjct: 120 ASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGL-------A 172
Query: 221 MAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWV 267
+ + +SI VT +NPAR A+ GG + W FWV
Sbjct: 173 LTLIHLISIPVTN------CSVNPARSTAVAIFQGGWALEQLWFFWV 213
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 105 LSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGC 164
+SGGH +P + + G + YV+AQ G+IV + + + A LGG
Sbjct: 85 ISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAG--IDLGGF 142
Query: 165 LIAGNG--TSAGISAETALILE--FTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGA 220
G G + G S +AL++E T F+++ +G T R + + A
Sbjct: 143 ASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGST---HGRVPAGFAPIAIGL----A 195
Query: 221 MAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGP 269
+ + +SI VT +NPAR G AL GG + W+FW+ P
Sbjct: 196 LTLIHLISIPVTNTS------VNPARSTGQALFVGGWALQQLWLFWLAP 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.141 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,347,202
Number of Sequences: 62578
Number of extensions: 371676
Number of successful extensions: 994
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 27
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)