BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045671
(628 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain
pdb|3ZYK|B Chain B, Structure Of Calm (Picalm) Anth Domain
Length = 296
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/307 (20%), Positives = 115/307 (37%), Gaps = 53/307 (17%)
Query: 36 VVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKAXXXXXX 95
V KAT+H+ K++ ++ + + ++ +R + + W+V K+
Sbjct: 33 VCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNS-SWVVVFKSLITTHH 91
Query: 96 XXXXXXXXFEDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEK------ 149
F I Y R L N+S+F D++ +D F+R Y+ YL+EK
Sbjct: 92 LMVYGNERF---IQYLASRNT-LFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQ 147
Query: 150 VEFVVYEKKMRGGEGKVXXXXXXXXXXXXXGMELRSQSYGDXXXXXXXXXXXXATPMREM 209
V F + K RG +G MR M
Sbjct: 148 VAFD-FTKVKRGADG----------------------------------------VMRTM 166
Query: 210 RPERVLARLNQLLRILDKVLACRPTGAAKNSRLVLVALYLVVKDSFGLYVDICEALGVLL 269
E++L + + +D +L + ++ A L+ KD+ L+ E + LL
Sbjct: 167 NTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLL 226
Query: 270 DKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIARSSEFPEVQRITDKLLGTL 329
+K+ +M+ C G + Y + + F + +GI R + P++ + LL L
Sbjct: 227 EKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDR-GDIPDLSQAPSSLLDAL 285
Query: 330 DGFLKEM 336
+ L +
Sbjct: 286 EQHLASL 292
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein
pdb|1HFA|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
pdb|1HG5|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(1,2,3,4,5,6)p6
Complex
pdb|1HG2|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(4,5)p2 Complex
Length = 289
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/307 (20%), Positives = 115/307 (37%), Gaps = 53/307 (17%)
Query: 36 VVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKAXXXXXX 95
V KAT+H+ K++ ++ + + ++ +R + + W+V K+
Sbjct: 26 VCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNS-SWVVVFKSLITTHH 84
Query: 96 XXXXXXXXFEDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEK------ 149
F I Y R L N+S+F D++ +D F+R Y+ YL+EK
Sbjct: 85 LMVYGNERF---IQYLASRNT-LFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQ 140
Query: 150 VEFVVYEKKMRGGEGKVXXXXXXXXXXXXXGMELRSQSYGDXXXXXXXXXXXXATPMREM 209
V F + K RG +G MR M
Sbjct: 141 VAFD-FTKVKRGADG----------------------------------------VMRTM 159
Query: 210 RPERVLARLNQLLRILDKVLACRPTGAAKNSRLVLVALYLVVKDSFGLYVDICEALGVLL 269
E++L + + +D +L + ++ A L+ KD+ L+ E + LL
Sbjct: 160 NTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLL 219
Query: 270 DKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIARSSEFPEVQRITDKLLGTL 329
+K+ +M+ C G + Y + + F + +GI R + P++ + LL L
Sbjct: 220 EKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDR-GDIPDLSQAPSSLLDAL 278
Query: 330 DGFLKEM 336
+ L +
Sbjct: 279 EQHLASL 285
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 104/282 (36%), Gaps = 52/282 (18%)
Query: 36 VVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKAXXXXXX 95
V KAT+H+ K++ ++ + + ++ +R + + W+V K+
Sbjct: 33 VCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNS-SWVVVFKSLITTHH 91
Query: 96 XXXXXXXXFEDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEK------ 149
F I Y R L N+S+F D++ +D F+R Y+ YL+EK
Sbjct: 92 LMVYGNERF---IQYLASRNT-LFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQ 147
Query: 150 VEFVVYEKKMRGGEGKVXXXXXXXXXXXXXGMELRSQSYGDXXXXXXXXXXXXATPMREM 209
V F + K RG +G MR M
Sbjct: 148 VAFD-FTKVKRGADG----------------------------------------VMRTM 166
Query: 210 RPERVLARLNQLLRILDKVLACRPTGAAKNSRLVLVALYLVVKDSFGLYVDICEALGVLL 269
E++L + + +D +L + ++ A L+ KD+ L+ E + LL
Sbjct: 167 NTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLL 226
Query: 270 DKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIAR 311
+K+ +M+ C G + Y + + F + +GI R
Sbjct: 227 EKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDR 268
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain
pdb|3ZYL|B Chain B, Structure Of A Truncated Calm (Picalm) Anth Domain
Length = 271
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 104/282 (36%), Gaps = 52/282 (18%)
Query: 36 VVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKAXXXXXX 95
V KAT+H+ K++ ++ + + ++ +R + + W+V K+
Sbjct: 33 VCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNS-SWVVVFKSLITTHH 91
Query: 96 XXXXXXXXFEDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEK------ 149
F I Y R L N+S+F D++ +D F+R Y+ YL+EK
Sbjct: 92 LMVYGNERF---IQYLASRNT-LFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQ 147
Query: 150 VEFVVYEKKMRGGEGKVXXXXXXXXXXXXXGMELRSQSYGDXXXXXXXXXXXXATPMREM 209
V F + K RG +G MR M
Sbjct: 148 VAFD-FTKVKRGADG----------------------------------------VMRTM 166
Query: 210 RPERVLARLNQLLRILDKVLACRPTGAAKNSRLVLVALYLVVKDSFGLYVDICEALGVLL 269
E++L + + +D +L + ++ A L+ KD+ L+ E + LL
Sbjct: 167 NTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLL 226
Query: 270 DKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIAR 311
+K+ +M+ C G + Y + + F + +GI R
Sbjct: 227 EKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDR 268
>pdb|2OLS|A Chain A, The Crystal Structure Of The Phosphoenolpyruvate Synthase
From Neisseria Meningitidis
Length = 794
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 434 FPSNGQPEVTSAWQTPAAESGRADWESALVETAGNLSKQKAAYAGGFDSLV-LNGMYDQG 492
FP E+ +AW A++G AD A+ +A A++AG ++ + +NG+ +
Sbjct: 96 FPEQLDAEIEAAWNKMVADAGGADISVAVRSSATAEDLPDASFAGQQETFLNINGLDNVK 155
Query: 493 AVRQHV 498
HV
Sbjct: 156 EAMHHV 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,951,396
Number of Sequences: 62578
Number of extensions: 584754
Number of successful extensions: 1376
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1367
Number of HSP's gapped (non-prelim): 11
length of query: 628
length of database: 14,973,337
effective HSP length: 105
effective length of query: 523
effective length of database: 8,402,647
effective search space: 4394584381
effective search space used: 4394584381
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)