Query 045671
Match_columns 628
No_of_seqs 216 out of 531
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:19:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0251 Clathrin assembly prot 100.0 3.9E-90 8.4E-95 754.2 32.7 475 8-575 1-490 (491)
2 PF07651 ANTH: ANTH domain; I 100.0 2.5E-66 5.3E-71 533.3 23.6 276 30-336 2-280 (280)
3 KOG0980 Actin-binding protein 100.0 3.3E-45 7.1E-50 409.5 20.4 266 29-334 4-275 (980)
4 cd03564 ANTH_AP180_CALM ANTH d 100.0 1.1E-32 2.3E-37 251.3 11.6 117 32-153 1-117 (117)
5 smart00273 ENTH Epsin N-termin 100.0 3.6E-28 7.8E-33 224.1 12.2 124 30-157 1-124 (127)
6 PF01417 ENTH: ENTH domain; I 99.4 3.9E-12 8.5E-17 117.3 11.3 118 29-151 1-120 (125)
7 cd00197 VHS_ENTH_ANTH VHS, ENT 99.2 6.4E-11 1.4E-15 107.3 10.1 111 33-149 2-112 (115)
8 cd03571 ENTH_epsin ENTH domain 99.0 2.8E-09 6.1E-14 98.9 11.1 114 32-150 2-116 (123)
9 KOG2056 Equilibrative nucleosi 98.4 1.9E-06 4.1E-11 91.7 10.7 118 29-151 19-137 (336)
10 cd03572 ENTH_epsin_related ENT 98.2 1.3E-05 2.7E-10 74.6 10.0 110 35-148 5-115 (122)
11 KOG2057 Predicted equilibrativ 96.8 0.0037 8E-08 66.3 7.7 117 28-148 20-139 (499)
12 cd03568 VHS_STAM VHS domain fa 96.2 0.023 4.9E-07 54.4 8.6 76 32-108 1-76 (144)
13 cd03569 VHS_Hrs_Vps27p VHS dom 96.2 0.032 7E-07 53.2 9.4 79 30-109 3-81 (142)
14 cd03567 VHS_GGA VHS domain fam 96.0 0.041 8.8E-07 52.4 9.0 76 32-108 2-77 (139)
15 PF00790 VHS: VHS domain; Int 95.9 0.044 9.5E-07 51.7 8.8 78 30-108 4-81 (140)
16 cd03565 VHS_Tom1 VHS domain fa 95.8 0.053 1.2E-06 51.6 9.3 77 32-108 2-78 (141)
17 smart00288 VHS Domain present 95.6 0.059 1.3E-06 50.7 8.6 77 32-109 1-77 (133)
18 cd03561 VHS VHS domain family; 95.1 0.11 2.4E-06 48.7 8.6 75 33-108 2-76 (133)
19 KOG2199 Signal transducing ada 89.0 1.4 3.1E-05 48.5 8.0 79 29-108 6-84 (462)
20 KOG1087 Cytosolic sorting prot 71.8 14 0.0003 42.2 8.1 76 32-108 2-77 (470)
21 KOG0414 Chromosome condensatio 59.7 79 0.0017 39.8 11.7 55 241-309 519-573 (1251)
22 PF14131 DUF4298: Domain of un 37.7 1.3E+02 0.0027 26.7 6.7 46 251-308 2-50 (90)
23 KOG1924 RhoA GTPase effector D 33.3 1E+03 0.022 29.5 16.9 18 141-158 423-440 (1102)
24 KOG3520 Predicted guanine nucl 32.8 1.5E+02 0.0032 37.5 8.3 48 241-294 446-493 (1167)
25 KOG1086 Cytosolic sorting prot 28.1 1.6E+02 0.0035 33.6 6.9 79 30-109 7-85 (594)
26 KOG4369 RTK signaling protein 26.1 1.8E+02 0.004 37.0 7.3 7 416-422 1422-1428(2131)
27 KOG1924 RhoA GTPase effector D 24.9 1.9E+02 0.0042 35.2 7.1 14 474-487 477-490 (1102)
28 PF02042 RWP-RK: RWP-RK domain 24.7 85 0.0018 25.4 3.1 35 267-310 8-42 (52)
29 PF14767 RPA_interact_M: Repli 24.4 1E+02 0.0022 27.2 3.7 24 555-578 45-69 (83)
30 PF02184 HAT: HAT (Half-A-TPR) 23.2 58 0.0013 23.8 1.7 26 280-305 3-28 (32)
31 PF08832 SRC-1: Steroid recept 22.0 48 0.001 29.0 1.2 11 92-102 58-69 (78)
32 PF10880 DUF2673: Protein of u 21.7 57 0.0012 26.8 1.5 27 541-573 17-46 (65)
33 PF14091 DUF4269: Domain of un 21.4 1.2E+02 0.0025 29.8 3.9 31 85-115 98-128 (152)
No 1
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-90 Score=754.22 Aligned_cols=475 Identities=38% Similarity=0.561 Sum_probs=360.4
Q ss_pred HHHHHhhhcchhhhhhhcCCCChhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHH
Q 045671 8 KAIGAVKDQTSISLAKVAGNIAPDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAV 87 (628)
Q Consensus 8 ka~GalKDqtsiglAkv~~~~~~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAl 87 (628)
+|+|++||+||||+|+|. +.+++|++||+|||+|+++|||+|||+.||.+|+.+++++.+|+++|++||++||||+||+
T Consensus 1 ~~~gaiKD~~s~~~a~v~-~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~TrnW~VAl 79 (491)
T KOG0251|consen 1 RAIGAIKDRTSIGKASVA-SAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALSERLNKTRNWTVAL 79 (491)
T ss_pred CCccccchhhhhHHHHhh-hhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCCcceeehH
Confidence 579999999999999994 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhcCcccccccccccccCCCCCCcchHHHHHHHHHHHhhh-hHHhhhhccCCCCcc
Q 045671 88 KALMLVHKLLLDGHLLFEDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVE-FVVYEKKMRGGEGKV 166 (628)
Q Consensus 88 KaLIlIHRLLreGdp~f~~El~~~srrg~rilnLs~F~D~s~s~swdysafVR~Ya~YLdeRLe-f~~~~~~~~g~~~~~ 166 (628)
|+||||||||++|+++|.+|+.++. ++|+|++|+|++++.+|||++|||+|++||+||++ |++...+
T Consensus 80 KsLIliH~ll~~G~~~f~~~l~~~~----~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d-------- 147 (491)
T KOG0251|consen 80 KALILIHRLLKEGDPSFEQELLSRN----LILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFD-------- 147 (491)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHhcc----cccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 9999999999999999999996442 68999999999988999999999999999999999 7777432
Q ss_pred ccccccccCcccccccccccccCCcchhhhhhhhccCCCCCCCC-HHHHHHHHHHHHHHHHHHHccccCCCccCchHHHH
Q 045671 167 EEREDRFRDDFDRGMELRSQSYGDVSESVRREERREATPMREMR-PERVLARLNQLLRILDKVLACRPTGAAKNSRLVLV 245 (628)
Q Consensus 167 ~~~~~~~~~~~~~~e~~r~rs~~~~~~~~~~~~~~~~~~~r~l~-~e~LL~~L~~LQ~LLdrll~crp~g~a~~N~lvl~ 245 (628)
. +.... ++ .....+++. ++.+|+++++||.|||++|+|+|++.+++|.+|++
T Consensus 148 -~-----~~~~~--------------------~~-~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~ 200 (491)
T KOG0251|consen 148 -I-----EKVKR--------------------GK-EKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIE 200 (491)
T ss_pred -c-----ccccC--------------------cc-cccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHH
Confidence 1 11000 00 112344555 78899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCCCCChhh
Q 045671 246 ALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIARSSEFPEVQRITDKL 325 (628)
Q Consensus 246 AL~llVkDSf~LY~~i~egli~LLd~FFeM~~~Da~kaleIYkRf~kQ~e~L~~FY~~Ck~l~~~r~~eiP~L~~~P~~l 325 (628)
||++||+|||+||+.||+||++|||+||||+++||+++|+||+||.+|+++|.+||++||.+|+.|.++||+|+++|.++
T Consensus 201 A~~lvvkdsf~ly~~i~~gi~~Llekffem~~~~a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~ 280 (491)
T KOG0251|consen 201 AFELVVKDSFKLYAAINDGIINLLEKFFEMSKHDAIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISL 280 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhhhhhhhcCCCCC-----Cccc--cccCC-C---CCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045671 326 LGTLDGFLKEMANRPKN-----PERI--REEKL-P---PKQEPEPDMNEVKALPAPENSSPPPPPPPKPQQPPKPQPQQV 394 (628)
Q Consensus 326 L~tLEEyIrd~~~~~~~-----~~~~--~~~~~-~---~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 394 (628)
|++|||||++....... +... .+.+. + +.++.++....+++.+.+.+..+..+.+.++.+...++....
T Consensus 281 l~~lEe~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (491)
T KOG0251|consen 281 LEALEEHLRDVEGGKAKTAKVSPVSQFSTDFESSESSSRLEEPEEQKEVIEELQEPLEQEEDQPSPNSENPEANDQAGIA 360 (491)
T ss_pred HHHHHHHHhhcccccccccccCCccccccchhccccccccccchhhhhccccccccccccccCCCCCCCCcccccccccc
Confidence 99999999998652211 1110 00000 0 000111110004444433221111111001111111111122
Q ss_pred c-ccccCCCCCC-CChhhhhcccccccccCCCCCCCCCCCCCCCCCCccccccCCCCCcccCCCccchhhhcccCCchhh
Q 045671 395 T-DDLVNLKDDA-TSADEQGNKLALALFSGPPTNTNGSWEAFPSNGQPEVTSAWQTPAAESGRADWESALVETAGNLSKQ 472 (628)
Q Consensus 395 ~-~dll~l~~~~-~~~~e~~~~lalAl~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~WElaLV~~~s~~~~~ 472 (628)
+ +||+.+++.. .++.+..|.||||+ +.+ .+ ..++|+.++...+.++|++ .+ + +
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~--------~~-------~~~~~~~~~~~~~~~~~~~---~~-~----~ 415 (491)
T KOG0251|consen 361 TDDLLLQPDNLPMFSASTAPNALALAL--PFP--------NH-------TGSGWGLPAATPDSAAWET---AT-M----Q 415 (491)
T ss_pred CcchhhcccCCCccccccCcchhhcCC--CCC--------CC-------CCCccccccCCcchhhhhh---cc-c----c
Confidence 2 4555555433 56678888888888 222 11 1244555555556666666 11 1 2
Q ss_pred hhhccCCcchhhhhhhchhHHHHhhhcccccCCCCccccccCCCCCCCCcccccCCCCCccccCCCCCcccccCCCCCCh
Q 045671 473 KAAYAGGFDSLVLNGMYDQGAVRQHVSTTQLSGGSASSVTLPGPGKSATPVLALPAPDGTVQTVGNNDPFAASLTVPPPS 552 (628)
Q Consensus 473 ~~~l~GG~d~llLd~mY~~~~~~~~~~~~~~~~gs~ssva~~~~~~~~~~~~alpap~g~~~~~~~~dPFaaS~~v~pp~ 552 (628)
++|||| +||||| ++.++++++.++.++|++++++.|. .+++++++| +||+.|..+++|
T Consensus 416 --~~~g~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~-----~~~~~~~~~----------~~~~~~~~~a~~- 473 (491)
T KOG0251|consen 416 --ALAGGL---TLNSMV-NNPFRATVQTAPQGQGSQPFGAQPM-----PAMAALPQP----------YPVGQPPFPAQL- 473 (491)
T ss_pred --cccccc---eecccc-CCchhhhccccccccCCCccccCCc-----hhhhccccc----------CCCCCCCCcCcc-
Confidence 899999 999999 8888887665555678899998774 345555544 555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 045671 553 YVQMAEMERKQQFLVQEQQLWQQ 575 (628)
Q Consensus 553 ~vQma~m~~~q~ll~~eq~~wqq 575 (628)
+ ..+|.++.|||+||||
T Consensus 474 -----~-~~~~~~~~~~q~~~~~ 490 (491)
T KOG0251|consen 474 -----E-MAAQNAAQQQQQQAQQ 490 (491)
T ss_pred -----h-hhhhhhcccccccccC
Confidence 3 4456677888999987
No 2
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=100.00 E-value=2.5e-66 Score=533.28 Aligned_cols=276 Identities=40% Similarity=0.624 Sum_probs=215.0
Q ss_pred hhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHHH
Q 045671 30 PDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEIV 109 (628)
Q Consensus 30 ~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El~ 109 (628)
++|++||+|||+|+++|||+||||+||.+|+. +.++++|+|+|.+|+++|+||+||||+|||||||||||||.|.+++.
T Consensus 2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~-~~~~~~~~~~l~~Rl~~~~~w~V~~K~Lil~H~llr~G~~~~~~~~~ 80 (280)
T PF07651_consen 2 SDLEKAVIKATSHDEAPPKEKHVREILSATSS-PESVAFLFWALSRRLPLTRNWIVALKALILLHRLLRDGHPSFLQELL 80 (280)
T ss_dssp -HHHHHHHHHT-SSS---HHHHHHHHHHHCST-TS-HHHHHHHHHHHCTSS-SHHHHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcC-CccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 68999999999999999999999999999999 88899999999999999999999999999999999999999999997
Q ss_pred HHHhcCccccccccccc--ccCCCCCCcchHHHHHHHHHHHhhhhHHhhhhccCCCCccccccccccCcccccccccccc
Q 045671 110 YSTRRGMRLLNMSDFRD--EAHSNSWDHGGFVRFYAMYLDEKVEFVVYEKKMRGGEGKVEEREDRFRDDFDRGMELRSQS 187 (628)
Q Consensus 110 ~~srrg~rilnLs~F~D--~s~s~swdysafVR~Ya~YLdeRLef~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~r~rs 187 (628)
.+.+ +++++.++|+ ++++.+|+|+.|||+|++||++|+.|+..++. ++++. .... + .+
T Consensus 81 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL~~rl~~~~~~~~-------~~g~~---~~~~----~---~~ 140 (280)
T PF07651_consen 81 RYNR---RLFDLSNIWDFDDSSSKSWDYSAFIRAYAKYLDERLSFHRKLKI-------DPGNL---EREE----E---GS 140 (280)
T ss_dssp HTT--------TT---T---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHSS-----------C---CCS---------S-
T ss_pred Hccc---chhhhccccccccCCccccchhHHHHHHHHHHHHHHHHHHHccc-------ccccc---cccc----c---cc
Confidence 6654 3455555554 67788999999999999999999998888764 22211 1111 0 00
Q ss_pred cCCcchhhhhhhhccCCCC-CCCCHHHHHHHHHHHHHHHHHHHccccCCCccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045671 188 YGDVSESVRREERREATPM-REMRPERVLARLNQLLRILDKVLACRPTGAAKNSRLVLVALYLVVKDSFGLYVDICEALG 266 (628)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~-r~l~~e~LL~~L~~LQ~LLdrll~crp~g~a~~N~lvl~AL~llVkDSf~LY~~i~egli 266 (628)
.... +.... ..+++++||++++.||++|+++++|+|.+.+.+|+|+++||++||+|||+||+.+|++|+
T Consensus 141 ~~~~----------~~~~~~~~~~~~~lL~~l~~lq~ll~~ll~~~~~~~~~~n~~~~~a~~lli~Ds~~lY~~i~~~i~ 210 (280)
T PF07651_consen 141 LVSR----------DDPNSRKSLDIDDLLDQLPKLQRLLDRLLDCRPRGAALNNQCVQAAFRLLIKDSFQLYKFINEGII 210 (280)
T ss_dssp --------------TTSHCC-C--HHHHHHHHHHHHHHHHHHHTT---GGG--SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc----------cCccccccccHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 11112 477889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCCCCChhhhhchhhhhhhh
Q 045671 267 VLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIARSSEFPEVQRITDKLLGTLDGFLKEM 336 (628)
Q Consensus 267 ~LLd~FFeM~~~Da~kaleIYkRf~kQ~e~L~~FY~~Ck~l~~~r~~eiP~L~~~P~~lL~tLEEyIrd~ 336 (628)
+|||+||+|++.||.++++||+||.+|+++|++||++||+++++++++||+|+++|++|+.+|||||+|.
T Consensus 211 ~Ll~~~~~m~~~~a~~~~~i~~rf~~q~~~L~~Fy~~c~~~~~~~~~~iP~l~~~p~~~l~~lEe~l~~~ 280 (280)
T PF07651_consen 211 NLLERFFEMSKPDAEKLLGIYKRFAKQTEELKEFYEWCKSLGYFRSLEIPSLPHIPPSFLQALEEYLRDP 280 (280)
T ss_dssp HHHHHHCCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--GGG-S--GGGS-CHHCCCCCHHHHC-
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999973
No 3
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=100.00 E-value=3.3e-45 Score=409.47 Aligned_cols=266 Identities=20% Similarity=0.248 Sum_probs=229.1
Q ss_pred ChhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 045671 29 APDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEI 108 (628)
Q Consensus 29 ~~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El 108 (628)
...+.+||.|||+.+|+|||+||||.||.+||++++ +.+||+..+|+....+.+.+||+|||||||||||||++..|.
T Consensus 4 d~~q~~av~KAis~~Et~~K~KH~Rt~I~gTh~eks--a~~FWt~ik~~PL~~~~VltwKfchllHKvLreGHpsal~es 81 (980)
T KOG0980|consen 4 DRAQLEAVQKAISKDETPPKRKHVRTIIVGTHDEKS--SKIFWTTIKRQPLENHEVLTWKFCHLLHKVLREGHPSALEES 81 (980)
T ss_pred hHHHHHHHHHHhccccCCCchhhhhheeeeeccccc--chhHHHHhhccccccchHHHHHHHHHHHHHHHcCCcchhHHH
Confidence 467889999999999999999999999999999998 568999999999999999999999999999999999999999
Q ss_pred HHHHhcCcccccccccccccCCCCCCcchHHHHHHHHHHHhhhhHHhhhhccCCCCccccccccccCccccccccccccc
Q 045671 109 VYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVEFVVYEKKMRGGEGKVEEREDRFRDDFDRGMELRSQSY 188 (628)
Q Consensus 109 ~~~srrg~rilnLs~F~D~s~s~swdysafVR~Ya~YLdeRLef~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~r~rs~ 188 (628)
.++.. +|..|+.+|++.+ .+||.+||.|++||.+||.||.+|+.|+|+ ++ |.. . ..
T Consensus 82 ~r~r~---~i~~l~r~w~~ls---~~Yg~lI~~Y~klL~~Kl~FH~k~p~FpGt-------le-~s~-~---------~l 137 (980)
T KOG0980|consen 82 QRYKK---WITQLGRMWGHLS---DGYGPLIRAYVKLLHDKLSFHAKHPVFPGT-------LE-YSD-Y---------QL 137 (980)
T ss_pred HHHHH---HHHHHHHHhcccc---ccchHHHHHHHHHHHHHHhHhhcCCCCCCC-------cc-ccH-H---------HH
Confidence 76542 7999999998764 689999999999999999999999975544 22 110 0 00
Q ss_pred CCcchhhhhhhhccCCCCCCCCHH--HHHHHHHHHHHHHHHHHcc-ccCCCccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 045671 189 GDVSESVRREERREATPMREMRPE--RVLARLNQLLRILDKVLAC-RPTGAAKNSRLVLVALYLVVKDSFGLYVDICEAL 265 (628)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~r~l~~e--~LL~~L~~LQ~LLdrll~c-rp~g~a~~N~lvl~AL~llVkDSf~LY~~i~egl 265 (628)
.....+.+..++|++| +++|.+..||+.+++.+.. |......+++|++++|++||.||++||++++.+|
T Consensus 138 --------~~av~D~n~~feltvdmmd~~D~ll~lq~~vF~s~~s~r~~s~t~qgqCrlapLI~lIqds~~lY~y~vkml 209 (980)
T KOG0980|consen 138 --------LTAVDDLNNGFELTVDMMDYMDSLLELQQTVFSSMNSSRWVSLTPQGQCRLAPLIPLIQDSSGLYDYLVKML 209 (980)
T ss_pred --------HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCcceehhHHHHHHHhhhhHHHHHHHHH
Confidence 0111245567788887 4888888899999998886 4445678999999999999999999999999999
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccc-cccCCCCCCCChhhhh--chhhhhh
Q 045671 266 GVLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIAR-SSEFPEVQRITDKLLG--TLDGFLK 334 (628)
Q Consensus 266 i~LLd~FFeM~~~Da~kaleIYkRf~kQ~e~L~~FY~~Ck~l~~~r-~~eiP~L~~~P~~lL~--tLEEyIr 334 (628)
++|++.. .+|++.+|+ .||..||++|++||+.|+++.|++ .++||+||+-||+|+. .|++|+.
T Consensus 210 fkLHs~v----p~dtLeghR--dRf~~qf~rLk~FY~~~S~lqYfk~LI~IP~LP~~~Pnf~~~sdl~~~~~ 275 (980)
T KOG0980|consen 210 FKLHSQV----PPDTLEGHR--DRFHTQFERLKQFYADCSNLQYFKRLIQIPTLPEDAPNFLRQSDLESYIT 275 (980)
T ss_pred HHHHcCC----CHHHhhhHH--HHHHHHHHHHHHHHHhcchhHHHHHHhcCCCCCCCCcccccccchhhcCC
Confidence 9999774 489999997 899999999999999999999994 5799999999999998 7999886
No 4
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.98 E-value=1.1e-32 Score=251.29 Aligned_cols=117 Identities=41% Similarity=0.663 Sum_probs=109.2
Q ss_pred HHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 045671 32 LEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEIVYS 111 (628)
Q Consensus 32 LdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El~~~ 111 (628)
++++|+|||+|+++|||+||||+||.+|+.++.++.+|+++|.+|+.+ +||+|+||+|||||+|||||+|.|.++++..
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~~~~~~~~~~l~~Rl~~-~~w~v~~K~LillH~llr~G~~~~~~~~~~~ 79 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLD-RNWVVVLKALILLHRLLREGHPSFLQELLSR 79 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 579999999999999999999999999999888999999999999986 9999999999999999999999999998633
Q ss_pred HhcCcccccccccccccCCCCCCcchHHHHHHHHHHHhhhhH
Q 045671 112 TRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVEFV 153 (628)
Q Consensus 112 srrg~rilnLs~F~D~s~s~swdysafVR~Ya~YLdeRLef~ 153 (628)
.++|++++|.|..++.+|||+.|||.|++||++|++||
T Consensus 80 ----~~~l~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl~~~ 117 (117)
T cd03564 80 ----RGWLNLSNFLDKSSSLGYGYSAFIRAYARYLDERLSFH 117 (117)
T ss_pred ----cCeeeccccccCCCCCchhhhHHHHHHHHHHHHHHhcC
Confidence 46899999999876688999999999999999999975
No 5
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=99.95 E-value=3.6e-28 Score=224.10 Aligned_cols=124 Identities=37% Similarity=0.461 Sum_probs=112.4
Q ss_pred hhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHHH
Q 045671 30 PDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEIV 109 (628)
Q Consensus 30 ~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El~ 109 (628)
++++++|+|||||++.|||+|||++|+.+|+.++.++..|+..|.+||.++++|+|+||+|+|||+||++|++.+..+..
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~~~~~~ 80 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILEAL 80 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 47899999999999999999999999999999988899999999999998889999999999999999999999987774
Q ss_pred HHHhcCcccccccccccccCCCCCCcchHHHHHHHHHHHhhhhHHhhh
Q 045671 110 YSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVEFVVYEK 157 (628)
Q Consensus 110 ~~srrg~rilnLs~F~D~s~s~swdysafVR~Ya~YLdeRLef~~~~~ 157 (628)
. ++..+++|++|++. ++.+|||+.|||.|++||++||.++...+
T Consensus 81 ~---~~~~i~~L~~f~~~-~~~~~d~g~~VR~ya~~L~~~l~~~~~l~ 124 (127)
T smart00273 81 R---NRNRILNLSDFQDI-DSRGKDQGANIRTYAKYLLERLEDDRRLK 124 (127)
T ss_pred H---hhHHHhhHhhCeec-CCCCeeCcHHHHHHHHHHHHHHcCHHHHh
Confidence 2 33479999999986 46789999999999999999999766543
No 6
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=99.37 E-value=3.9e-12 Score=117.28 Aligned_cols=118 Identities=30% Similarity=0.303 Sum_probs=94.7
Q ss_pred ChhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhc--cCCCChHHHHHHHHHHHHHHhcCCchHHH
Q 045671 29 APDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRL--SKTHDWIVAVKALMLVHKLLLDGHLLFED 106 (628)
Q Consensus 29 ~~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL--~kTrnWiVAlKaLIlIHRLLreGdp~f~~ 106 (628)
++++++-|.+||+.++.+|..+++.+|..+|+.+ ..+..++..|.+|| .+.++|.+.+|+|.+||.||+.|++.|..
T Consensus 1 ys~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~-~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~ 79 (125)
T PF01417_consen 1 YSELELKVREATSNDPWGPPGKLLAEIAQLTYNS-KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVD 79 (125)
T ss_dssp --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHH
Confidence 4688999999999999999999999999999998 66788999999999 44789999999999999999999999999
Q ss_pred HHHHHHhcCcccccccccccccCCCCCCcchHHHHHHHHHHHhhh
Q 045671 107 EIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVE 151 (628)
Q Consensus 107 El~~~srrg~rilnLs~F~D~s~s~swdysafVR~Ya~YLdeRLe 151 (628)
++.... ..|..+.+|+- ..+.+.+++.-||..|+-|.+-|.
T Consensus 80 ~~~~~~---~~I~~l~~f~~-~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 80 ELRDHI---DIIRELQDFQY-VDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HHHHTH---HHHHGGGG----BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH---HHHhhcceeec-cCCCCccHHHHHHHHHHHHHHHhC
Confidence 984332 24677788876 333578899999999998887653
No 7
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.21 E-value=6.4e-11 Score=107.35 Aligned_cols=111 Identities=24% Similarity=0.206 Sum_probs=92.2
Q ss_pred HHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 045671 33 EVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEIVYST 112 (628)
Q Consensus 33 dvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El~~~s 112 (628)
++.|.|||+++...|+.+++.+|..+|......+..++.+|.+||.+ +||.|++|+|.|||.|+..|++.|..|+.
T Consensus 2 ~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~-~~~~~~lkaL~lLe~lvkN~g~~f~~~i~--- 77 (115)
T cd00197 2 EKTVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINN-KNPHVVLKALTLLEYCVKNCGERFHQEVA--- 77 (115)
T ss_pred hHHHHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHccHHHHHHHH---
Confidence 67899999999999999999999999988777789999999999985 69999999999999999999999998873
Q ss_pred hcCcccccccccccccCCCCCCcchHHHHHHHHHHHh
Q 045671 113 RRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEK 149 (628)
Q Consensus 113 rrg~rilnLs~F~D~s~s~swdysafVR~Ya~YLdeR 149 (628)
++ ..+..+..| +.....+.+.+..||.++++|.+.
T Consensus 78 ~~-~~~~~l~~~-~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 78 SN-DFAVELLKF-DKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred Hh-HHHHHHHHh-hccccccCCCChHHHHHHHHHHHH
Confidence 22 134455444 222234567789999999999864
No 8
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=99.00 E-value=2.8e-09 Score=98.88 Aligned_cols=114 Identities=25% Similarity=0.211 Sum_probs=91.5
Q ss_pred HHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccC-CCChHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 045671 32 LEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSK-THDWIVAVKALMLVHKLLLDGHLLFEDEIVY 110 (628)
Q Consensus 32 LdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~k-TrnWiVAlKaLIlIHRLLreGdp~f~~El~~ 110 (628)
.++-|..|||.++.+|..+++.+|..+|+.. ..+..++..|.+||.. .++|.+++|+|+||+.||+.|++.|..++..
T Consensus 2 ~e~~vreATs~d~wGp~~~~m~eIa~~t~~~-~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~ 80 (123)
T cd03571 2 AELKVREATSNDPWGPSGTLMAEIARATYNY-VEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARE 80 (123)
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5788999999999999999999999999886 4467899999999975 3799999999999999999999999988843
Q ss_pred HHhcCcccccccccccccCCCCCCcchHHHHHHHHHHHhh
Q 045671 111 STRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKV 150 (628)
Q Consensus 111 ~srrg~rilnLs~F~D~s~s~swdysafVR~Ya~YLdeRL 150 (628)
... .|-.|.+|.-- ...+.|.+.-||.=|+-|.+-|
T Consensus 81 ~~~---~i~~L~~F~~~-d~~g~d~G~~VR~ka~~i~~Ll 116 (123)
T cd03571 81 NLY---IIRTLKDFQYI-DENGKDQGINVREKAKEILELL 116 (123)
T ss_pred hHH---HHHhhccceee-CCCCCchhHHHHHHHHHHHHHh
Confidence 221 34455666521 1234589999998887766544
No 9
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=98.37 E-value=1.9e-06 Score=91.74 Aligned_cols=118 Identities=25% Similarity=0.210 Sum_probs=94.0
Q ss_pred ChhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccC-CCChHHHHHHHHHHHHHHhcCCchHHHH
Q 045671 29 APDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSK-THDWIVAVKALMLVHKLLLDGHLLFEDE 107 (628)
Q Consensus 29 ~~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~k-TrnWiVAlKaLIlIHRLLreGdp~f~~E 107 (628)
+++.++.|.-||+.+..-|.-+++-+|..+|+... .+..|+..|.||+.+ -++|.+++|+|.||-.||.-|+..|..+
T Consensus 19 y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~~-e~~eIm~vi~kRl~d~gknWR~VyKaLtlleyLl~~GSErv~~~ 97 (336)
T KOG2056|consen 19 YSEAELKVRDATSNDPWGPSGTLMAEIAQATYNFV-EYQEIMDVLWKRLNDSGKNWRHVYKALTLLEYLLKNGSERVVDE 97 (336)
T ss_pred chHHHHHHHhccccccCCCchHHHHHHHHHhcCHH-HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 68899999999999999999999999999998874 468899999999976 5899999999999999999999999888
Q ss_pred HHHHHhcCcccccccccccccCCCCCCcchHHHHHHHHHHHhhh
Q 045671 108 IVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVE 151 (628)
Q Consensus 108 l~~~srrg~rilnLs~F~D~s~s~swdysafVR~Ya~YLdeRLe 151 (628)
+....- -|--|.+|.-.. ..+.|.+.-||.=++-|..-|+
T Consensus 98 ~ren~~---~I~tL~~Fq~iD-~~G~dqG~nVRkkak~l~~LL~ 137 (336)
T KOG2056|consen 98 TRENIY---TIETLKDFQYID-EDGKDQGLNVRKKAKELLSLLE 137 (336)
T ss_pred HHhhhH---HHHHHhhceeeC-CCCccchHHHHHHHHHHHHHhc
Confidence 732110 123334554211 2457889999998877755443
No 10
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=98.16 E-value=1.3e-05 Score=74.57 Aligned_cols=110 Identities=25% Similarity=0.287 Sum_probs=91.1
Q ss_pred HHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 045671 35 LVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEIVYSTRR 114 (628)
Q Consensus 35 AIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El~~~srr 114 (628)
.|.|||+.++.||---=.++|...|+.+...+.+++..|.+||.+ ++-.|-+|+|-+|-.|++.|++.|..++...+.
T Consensus 5 ll~~ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~-~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~- 82 (122)
T cd03572 5 LLSKATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKR-SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSA- 82 (122)
T ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHH-
Confidence 578999999988877777899999999877889999999999985 677888999999999999999999998854432
Q ss_pred CcccccccccccccCC-CCCCcchHHHHHHHHHHH
Q 045671 115 GMRLLNMSDFRDEAHS-NSWDHGGFVRFYAMYLDE 148 (628)
Q Consensus 115 g~rilnLs~F~D~s~s-~swdysafVR~Ya~YLde 148 (628)
.|..+.+|+..-.+ .+++.+..||.=|+=|..
T Consensus 83 --~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 83 --QIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred --HHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 46777888764333 568899999987776554
No 11
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.0037 Score=66.30 Aligned_cols=117 Identities=22% Similarity=0.222 Sum_probs=90.5
Q ss_pred CChhHHHHHHhhcCCCCCCCChhhHHHHHHHHccC-CccHHHHHHHHhhhccC--CCChHHHHHHHHHHHHHHhcCCchH
Q 045671 28 IAPDLEVLVVKATSHDDEPADDKYVREIVSLMSYS-RGYVSACIATISKRLSK--THDWIVAVKALMLVHKLLLDGHLLF 104 (628)
Q Consensus 28 ~~~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~s-r~~v~~~v~aLsrRL~k--TrnWiVAlKaLIlIHRLLreGdp~f 104 (628)
.+++++.-|+.|||.|...|.--.+-+|-.+|... -..+..++..|..|+.+ -.+|.-++|+||||..||+.|...|
T Consensus 20 NY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry~EdFpelmnmL~qRMLedNK~~WRRVYKSLiLLaYLikNGSER~ 99 (499)
T KOG2057|consen 20 NYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRYMEDFPELMNMLFQRMLEDNKDAWRRVYKSLILLAYLIKNGSERF 99 (499)
T ss_pred cchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 47899999999999999999999999999988652 13467889999999853 3579999999999999999999999
Q ss_pred HHHHHHHHhcCcccccccccccccCCCCCCcchHHHHHHHHHHH
Q 045671 105 EDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDE 148 (628)
Q Consensus 105 ~~El~~~srrg~rilnLs~F~D~s~s~swdysafVR~Ya~YLde 148 (628)
.+|...+.-. -|-|.--+|-|+- +.|.+-.||.-.+-|.|
T Consensus 100 VqeAREh~Yd-LR~LEnYhfiDEh---GKDQGINIR~kVKeilE 139 (499)
T KOG2057|consen 100 VQEAREHAYD-LRRLENYHFIDEH---GKDQGINIRHKVKEILE 139 (499)
T ss_pred HHHHHHHHHH-HHhhhhccchhhh---CccccccHHHHHHHHHH
Confidence 9887433211 1223334666753 36788999988776643
No 12
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=96.20 E-value=0.023 Score=54.40 Aligned_cols=76 Identities=22% Similarity=0.271 Sum_probs=68.1
Q ss_pred HHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 045671 32 LEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEI 108 (628)
Q Consensus 32 LdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El 108 (628)
++..|.|||+....-++--.+-+|-............++++|.+||. .+|..|++.+|.|+--++..+...|..|+
T Consensus 1 ~e~~iekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 76 (144)
T cd03568 1 FDDLVEKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLN-HKDPNVQLRALTLLDACAENCGKRFHQEV 76 (144)
T ss_pred ChHHHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 46789999999998899988888888777666778999999999997 58999999999999999999999999888
No 13
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=96.16 E-value=0.032 Score=53.15 Aligned_cols=79 Identities=23% Similarity=0.245 Sum_probs=70.3
Q ss_pred hhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHHH
Q 045671 30 PDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEIV 109 (628)
Q Consensus 30 ~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El~ 109 (628)
+.++..|.|||+....-|+--.+-+|............+++++|.+||. .+|-.|++-+|.|+.-++..+...|..|+.
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~eva 81 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLL-SKNPNVQLYALLLLESCVKNCGTHFHDEVA 81 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHCCHHHHHHHh
Confidence 5689999999999888889999888888887766778999999999997 589999999999999999998888888773
No 14
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=95.96 E-value=0.041 Score=52.43 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=68.6
Q ss_pred HHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 045671 32 LEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEI 108 (628)
Q Consensus 32 LdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El 108 (628)
++..|.|||+....-|+--++-+|.............++.+|.+||. .+|-.|++-+|.++--++..+...|..|+
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 77 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQ-SPQEKEALQALTVLEACMKNCGERFHSEV 77 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 78899999999999999999999888877666667899999999997 68999999999999999999888898887
No 15
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=95.86 E-value=0.044 Score=51.74 Aligned_cols=78 Identities=26% Similarity=0.259 Sum_probs=67.3
Q ss_pred hhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 045671 30 PDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEI 108 (628)
Q Consensus 30 ~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El 108 (628)
..++..|.|||++...-++--.+-.|............+++++|.+||.+ +|.-|.+-+|.|+.-++..+.+.|..|+
T Consensus 4 ~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~-~~~~vq~~aL~lld~lvkNcg~~f~~ev 81 (140)
T PF00790_consen 4 SSITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKH-GNPNVQLLALTLLDALVKNCGPRFHREV 81 (140)
T ss_dssp SHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 57899999999999888888888888888777766778999999999975 8999999999999999999999998887
No 16
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=95.85 E-value=0.053 Score=51.62 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=68.4
Q ss_pred HHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 045671 32 LEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEI 108 (628)
Q Consensus 32 LdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El 108 (628)
++..|.|||+....-++--.+-+|-...........+++++|.+||...+|-.|++-+|.|+--++..+...|..|+
T Consensus 2 ~~~~IekATse~l~~~dw~~ileicD~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ei 78 (141)
T cd03565 2 VGQLIEKATDGSLQSEDWGLNMEICDIINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLV 78 (141)
T ss_pred HhHHHHHHcCcCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 46789999999998889888888888877666677999999999997557899999999999999999999999888
No 17
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=95.64 E-value=0.059 Score=50.66 Aligned_cols=77 Identities=26% Similarity=0.233 Sum_probs=68.1
Q ss_pred HHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHHH
Q 045671 32 LEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEIV 109 (628)
Q Consensus 32 LdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El~ 109 (628)
++..|.|||+....-++--.+-+|.............++++|.+||. .+|..|++.+|.++--++..+...|..|+.
T Consensus 1 ~~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~-~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~ 77 (133)
T smart00288 1 VERLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLN-NKNPHVALLALTLLDACVKNCGSKFHLEVA 77 (133)
T ss_pred ChhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 35689999999988899999888888887776677899999999997 689999999999999999998888988873
No 18
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=95.12 E-value=0.11 Score=48.67 Aligned_cols=75 Identities=21% Similarity=0.174 Sum_probs=66.7
Q ss_pred HHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 045671 33 EVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEI 108 (628)
Q Consensus 33 dvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El 108 (628)
+..|.|||+....-++-.-+-+|.............++++|.+||. .+|-.|++-+|.++--++..+.+.|..++
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~-~~n~~vql~AL~lLd~~vkNcg~~f~~~i 76 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIK-YGNPHVQLLALTLLELLVKNCGKPFHLQV 76 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 5679999999888888888888888887777777999999999997 57999999999999999999999898777
No 19
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=88.98 E-value=1.4 Score=48.53 Aligned_cols=79 Identities=23% Similarity=0.249 Sum_probs=63.6
Q ss_pred ChhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 045671 29 APDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEI 108 (628)
Q Consensus 29 ~~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El 108 (628)
...++..|.|||+...+-=+=-+|-.+-......+.....|+.+|.|||. ++|.-|++-+|-|+--+.......|+.|+
T Consensus 6 ~n~~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln-~~dphV~L~AlTLlda~~~NCg~~~r~EV 84 (462)
T KOG2199|consen 6 ANPFEQDVEKATDEKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLN-HKDPHVVLQALTLLDACVANCGKRFRLEV 84 (462)
T ss_pred cchHHHHHHHhcCcccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHhcchHHHHHH
Confidence 35689999999998887666666666555544444345899999999998 78999999999999999988778888887
No 20
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.79 E-value=14 Score=42.16 Aligned_cols=76 Identities=24% Similarity=0.249 Sum_probs=57.4
Q ss_pred HHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 045671 32 LEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEI 108 (628)
Q Consensus 32 LdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El 108 (628)
+.+.|-|||+-...-|+=-..-+|-...-...+...+.+++|.|||.. ++-.|++=+|.||--|+......|..++
T Consensus 2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~-k~s~vq~lALtlLE~cvkNCG~~fh~~V 77 (470)
T KOG1087|consen 2 VGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNS-KNSKVQLLALTLLETCVKNCGYSFHLQV 77 (470)
T ss_pred hHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 467899999998888887766666666555555667999999999984 5668899999999888776554554333
No 21
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.75 E-value=79 Score=39.79 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Q 045671 241 RLVLVALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGI 309 (628)
Q Consensus 241 ~lvl~AL~llVkDSf~LY~~i~egli~LLd~FFeM~~~Da~kaleIYkRf~kQ~e~L~~FY~~Ck~l~~ 309 (628)
-+.+-+++.-++|.+++-+.+.+++-.++...|.=...|...+. +||-.|+..|+
T Consensus 519 i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~I--------------dfl~~c~~F~I 573 (1251)
T KOG0414|consen 519 IMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAI--------------DFLVRCKQFGI 573 (1251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH--------------HHHHHHHHhCC
Confidence 34455788888999999999999999998887766666655544 56677777665
No 22
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=37.66 E-value=1.3e+02 Score=26.70 Aligned_cols=46 Identities=24% Similarity=0.487 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhcC
Q 045671 251 VKDSFGLYVDICEALGVLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFY---GWCKDIG 308 (628)
Q Consensus 251 VkDSf~LY~~i~egli~LLd~FFeM~~~Da~kaleIYkRf~kQ~e~L~~FY---~~Ck~l~ 308 (628)
|.+.=++|..+++.+..| .++++-++++..-+.+|++|| .|-+...
T Consensus 2 I~eme~~y~~~~~~l~~l------------e~~l~~~~~~~~~~~~L~~YY~s~~w~~d~e 50 (90)
T PF14131_consen 2 IQEMEKIYNEWCELLEEL------------EEALEKWQEAQPDYRKLRDYYGSEEWMEDYE 50 (90)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHCcHhHHHHHH
Confidence 345556777776644433 667788889999999999999 3544444
No 23
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=33.32 E-value=1e+03 Score=29.49 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=10.2
Q ss_pred HHHHHHHHhhhhHHhhhh
Q 045671 141 FYAMYLDEKVEFVVYEKK 158 (628)
Q Consensus 141 ~Ya~YLdeRLef~~~~~~ 158 (628)
.|.+.++|-+.-.++|+.
T Consensus 423 qYykLIEecISqIvlHr~ 440 (1102)
T KOG1924|consen 423 QYYKLIEECISQIVLHRT 440 (1102)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 466666666655555543
No 24
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=32.84 E-value=1.5e+02 Score=37.54 Aligned_cols=48 Identities=21% Similarity=0.113 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHH
Q 045671 241 RLVLVALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRGFEAYVSAAKMI 294 (628)
Q Consensus 241 ~lvl~AL~llVkDSf~LY~~i~egli~LLd~FFeM~~~Da~kaleIYkRf~kQ~ 294 (628)
-+-+.+|....+|+..||+.|-+ ||..+|+-+-.++++ ++|-.||.++
T Consensus 446 ~~f~~~lk~rr~e~~~vI~~IGD----lLl~~FsGe~ae~L~--~~~a~FCs~q 493 (1167)
T KOG3520|consen 446 SSFLQRLKERRKESLVVIKRIGD----LLLDQFSGENAERLK--KTYAQFCSRQ 493 (1167)
T ss_pred HHHHHHHHHHHHhccchHHHHHH----HHHHHcCchHHHHHH--HHHHHHhhcc
Confidence 45677888888898888888776 444457665555443 5566666543
No 25
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.06 E-value=1.6e+02 Score=33.55 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=59.3
Q ss_pred hhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHHH
Q 045671 30 PDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEIV 109 (628)
Q Consensus 30 ~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El~ 109 (628)
..|+.=|.|||+....--+=|+|..++--.........-.+|.|+..++.-..| =|+-+|-++..+++.|...|.+|+-
T Consensus 7 ~sle~wlnrATdp~~~eedw~ai~~fceqinkdp~gp~lAv~LlaHKiqSPqe~-EAl~altvLe~cmkncGekfH~evg 85 (594)
T KOG1086|consen 7 ESLEYWLNRATDPSNDEEDWKAIDGFCEQINKDPEGPLLAVRLLAHKIQSPQEW-EALQALTVLEYCMKNCGEKFHEEVG 85 (594)
T ss_pred ccHHHHHHhccCccchHHHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCChhHH-HHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 468899999999877444556666666655555444455688999999754445 5888999999999999888888874
No 26
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=26.07 E-value=1.8e+02 Score=37.00 Aligned_cols=7 Identities=57% Similarity=0.885 Sum_probs=3.2
Q ss_pred ccccccC
Q 045671 416 ALALFSG 422 (628)
Q Consensus 416 alAl~~~ 422 (628)
-||+|.|
T Consensus 1422 ~~as~gg 1428 (2131)
T KOG4369|consen 1422 PLASFGG 1428 (2131)
T ss_pred hhhhcCC
Confidence 3445544
No 27
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=24.93 E-value=1.9e+02 Score=35.22 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=7.6
Q ss_pred hhccCCcchhhhhh
Q 045671 474 AAYAGGFDSLVLNG 487 (628)
Q Consensus 474 ~~l~GG~d~llLd~ 487 (628)
+.|-+-||+.+-|=
T Consensus 477 ~e~~kk~~ke~ta~ 490 (1102)
T KOG1924|consen 477 AELEKKFDKELTAR 490 (1102)
T ss_pred HHHHHHHHHHHhHH
Confidence 34555566655553
No 28
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=24.73 E-value=85 Score=25.35 Aligned_cols=35 Identities=14% Similarity=0.378 Sum_probs=25.5
Q ss_pred HHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcc
Q 045671 267 VLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIA 310 (628)
Q Consensus 267 ~LLd~FFeM~~~Da~kaleIYkRf~kQ~e~L~~FY~~Ck~l~~~ 310 (628)
.-|..||.|+..||.+.|.+-... +=..|+.+|+.
T Consensus 8 ~~L~~~fhlp~~eAA~~Lgv~~T~---------LKr~CR~~GI~ 42 (52)
T PF02042_consen 8 EDLSQYFHLPIKEAAKELGVSVTT---------LKRRCRRLGIP 42 (52)
T ss_pred HHHHHHhCCCHHHHHHHhCCCHHH---------HHHHHHHcCCC
Confidence 456789999999999988753333 33468888864
No 29
>PF14767 RPA_interact_M: Replication protein A interacting middle
Probab=24.39 E-value=1e+02 Score=27.17 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=19.3
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHhh
Q 045671 555 QMAEMERK-QQFLVQEQQLWQQYGR 578 (628)
Q Consensus 555 Qma~m~~~-q~ll~~eq~~wqq~~~ 578 (628)
.|+.|+.= |.|..+||.+|++|.+
T Consensus 45 iL~~mEei~~El~~eE~~ii~eyE~ 69 (83)
T PF14767_consen 45 ILLVMEEIQQELIREEQSIIEEYEK 69 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778774 4499999999999974
No 30
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=23.20 E-value=58 Score=23.83 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045671 280 CVRGFEAYVSAAKMIDELVGFYGWCK 305 (628)
Q Consensus 280 a~kaleIYkRf~kQ~e~L~~FY~~Ck 305 (628)
-.+|=.||.||...+-.+..+..+||
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~WikyAk 28 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNWIKYAK 28 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34566799999999999998888876
No 31
>PF08832 SRC-1: Steroid receptor coactivator; InterPro: IPR014935 This domain is found in steroid/nuclear receptor coactivators and contains two LXXLL motifs that are involved in receptor binding [] and includes SRC-1/NcoA-1, NcoA-2/TIF2, pCIP/ACTR/GRIP-1/AIB1. ; PDB: 4DMA_F 2O9I_D 2QXM_D 2QGT_D 2QA8_D 2QSE_C 2QA6_D 2QAB_D 2QR9_D 1WM0_Y ....
Probab=22.00 E-value=48 Score=28.98 Aligned_cols=11 Identities=36% Similarity=0.788 Sum_probs=8.3
Q ss_pred HHHHHHhcC-Cc
Q 045671 92 LVHKLLLDG-HL 102 (628)
Q Consensus 92 lIHRLLreG-dp 102 (628)
++||||++| .|
T Consensus 58 ILHrLLQng~SP 69 (78)
T PF08832_consen 58 ILHRLLQNGNSP 69 (78)
T ss_dssp HHHHHHHCS---
T ss_pred HHHHHHhcCCCH
Confidence 589999999 45
No 32
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=21.73 E-value=57 Score=26.83 Aligned_cols=27 Identities=41% Similarity=0.786 Sum_probs=18.9
Q ss_pred cccccCCCCCChhH---HHHHHHHHHHHHHHHHHHH
Q 045671 541 PFAASLTVPPPSYV---QMAEMERKQQFLVQEQQLW 573 (628)
Q Consensus 541 PFaaS~~v~pp~~v---Qma~m~~~q~ll~~eq~~w 573 (628)
=||.|..+|-|+.| |+..|.. ..||-|
T Consensus 17 vfassmq~p~pasvtttqi~amst------~~qq~w 46 (65)
T PF10880_consen 17 VFASSMQMPDPASVTTTQIQAMST------DDQQAW 46 (65)
T ss_pred HhhhcccCCCCcceeHHHHHHhcc------hhHHHH
Confidence 38999999999988 4444444 455556
No 33
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=21.44 E-value=1.2e+02 Score=29.83 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 045671 85 VAVKALMLVHKLLLDGHLLFEDEIVYSTRRG 115 (628)
Q Consensus 85 VAlKaLIlIHRLLreGdp~f~~El~~~srrg 115 (628)
-+|+=+++=||||..+.++|+++++...+.|
T Consensus 98 nayrHm~iE~rLL~~~g~~~r~~Ii~LK~~G 128 (152)
T PF14091_consen 98 NAYRHMLIEHRLLELHGPSFREEIIELKESG 128 (152)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC
Confidence 3789999999999999999999998766554
Done!