Query 045671
Match_columns 628
No_of_seqs 216 out of 531
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 07:06:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045671.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045671hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hx8_A Synapse-enriched clathr 100.0 4.1E-74 1.4E-78 598.4 28.4 283 1-335 3-298 (299)
2 3zym_A Phosphatidylinositol-bi 100.0 3.1E-68 1.1E-72 556.7 26.1 283 1-335 8-291 (310)
3 3zyl_A Phosphatidylinositol-bi 100.0 3.8E-66 1.3E-70 531.8 25.7 261 1-312 8-269 (271)
4 1eyh_A Epsin; superhelix of he 99.4 4.8E-13 1.6E-17 125.6 11.8 119 28-151 2-121 (144)
5 1inz_A EPS15-interacting porte 99.4 7.5E-13 2.6E-17 124.8 11.8 119 27-150 19-138 (148)
6 3onk_A Epsin-3, ENT3; helix, p 99.1 4.6E-10 1.6E-14 106.0 11.2 120 27-151 7-128 (150)
7 1xgw_A Epsin 4; ENTH, enthopro 99.1 8.3E-10 2.8E-14 106.7 13.3 120 27-151 30-151 (176)
8 1vdy_A Hypothetical protein (R 98.4 1.7E-06 5.8E-11 80.8 11.3 115 32-150 12-128 (140)
9 1elk_A Target of MYB1; superhe 96.3 0.015 5.1E-07 54.8 9.3 78 31-108 16-93 (157)
10 3ldz_A STAM-1, signal transduc 96.2 0.018 6.1E-07 53.3 9.0 77 31-108 5-81 (140)
11 1x5b_A Signal transducing adap 96.0 0.019 6.3E-07 54.6 8.5 78 30-108 14-91 (163)
12 3g2s_A C-terminal fragment of 96.0 0.025 8.7E-07 53.0 9.3 79 29-108 9-87 (149)
13 3rru_A TOM1L1 protein; structu 96.0 0.024 8.3E-07 53.3 9.2 79 30-108 15-93 (152)
14 1juq_A ADP-ribosylation factor 95.9 0.02 6.8E-07 54.8 8.3 78 30-108 12-89 (171)
15 1mhq_A ADP-ribosylation factor 95.9 0.023 7.8E-07 53.2 8.4 76 32-108 2-77 (148)
16 3zyq_A Hepatocyte growth facto 95.7 0.03 1E-06 55.6 9.2 79 29-108 6-84 (226)
17 1dvp_A HRS, hepatocyte growth 95.3 0.051 1.7E-06 53.6 8.8 77 31-108 5-81 (220)
18 3bej_E Nuclear receptor coacti 54.6 4.8 0.00016 26.6 1.2 13 91-103 13-25 (26)
19 4gyx_A Type III collagen fragm 39.1 32 0.0011 23.3 3.4 20 603-622 5-25 (31)
20 2prg_C Nuclear receptor coacti 29.3 19 0.00063 30.7 1.3 12 92-103 67-78 (88)
No 1
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=100.00 E-value=4.1e-74 Score=598.45 Aligned_cols=283 Identities=22% Similarity=0.329 Sum_probs=240.8
Q ss_pred CChhHHHHHHHHhh-hcchhhhhhhcCCCChhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccC
Q 045671 1 MAPSTIRKAIGAVK-DQTSISLAKVAGNIAPDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSK 79 (628)
Q Consensus 1 m~~~~~Rka~GalK-DqtsiglAkv~~~~~~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~k 79 (628)
|++++||+++||+| |+|+++ +++||+|||+|+++|||+||||+||.+|+.+++++++|+++|.+|+ +
T Consensus 3 ~~~~~~~~~~~a~k~~~~~~~-----------l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~-~ 70 (299)
T 1hx8_A 3 MAGQTINDRLLAARHSLAGQG-----------LAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERS-Q 70 (299)
T ss_dssp -------------------CH-----------HHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHH-T
T ss_pred CchHHHHHHHHHHhhccchhH-----------HHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhc-c
Confidence 78899999999999 988854 6679999999999999999999999999999999999999999995 7
Q ss_pred CCChHHHHHHHHHHHHHHhcCCchHHHHHHHHHhcCcccccccccccccC-----------CCCCCcchHHHHHHHHHHH
Q 045671 80 THDWIVAVKALMLVHKLLLDGHLLFEDEIVYSTRRGMRLLNMSDFRDEAH-----------SNSWDHGGFVRFYAMYLDE 148 (628)
Q Consensus 80 TrnWiVAlKaLIlIHRLLreGdp~f~~El~~~srrg~rilnLs~F~D~s~-----------s~swdysafVR~Ya~YLde 148 (628)
|+||+||||+|||||||||||||.|++++. ++ +++|+|++|+|.++ +.+||||.|||+|++||++
T Consensus 71 ~~~w~va~K~LivlH~llreG~~~~~~~l~--~~--~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~ 146 (299)
T 1hx8_A 71 NANWVVVYKSLITTHHLMAYGNERFMQYLA--SS--NSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNE 146 (299)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSCHHHHHHHH--HT--TCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHH--hC--CcccchhhhhcccccccccccccccccccchhHHHHHHHHHHHH
Confidence 999999999999999999999999999983 22 47999999999864 3578999999999999999
Q ss_pred hhh-hHHhhhhccCCCCccccccccccCcccccccccccccCCcchhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 045671 149 KVE-FVVYEKKMRGGEGKVEEREDRFRDDFDRGMELRSQSYGDVSESVRREERREATPMREMRPERVLARLNQLLRILDK 227 (628)
Q Consensus 149 RLe-f~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~r~rs~~~~~~~~~~~~~~~~~~~r~l~~e~LL~~L~~LQ~LLdr 227 (628)
|+. ||.++.+ | ...+ ...+.+++++|++++||++++.||+|||+
T Consensus 147 r~~~f~~~~~d-------~-------~~~~---------------------~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ 191 (299)
T 1hx8_A 147 KSLSYRAMAFD-------F-------CKVK---------------------RGKEEGSLRSMNAEKLLKTLPVLQAQLDA 191 (299)
T ss_dssp HHHHHHHHSSC-------G-------GGC--------------------------CCCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-------c-------cccc---------------------cCccccchhhCCHHHHHHHHHHHHHHHHH
Confidence 965 9998532 2 1100 01134678999999999999999999999
Q ss_pred HHccccCCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045671 228 VLACRPTGAAKNSRLVLVALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDI 307 (628)
Q Consensus 228 ll~crp~g~a~~N~lvl~AL~llVkDSf~LY~~i~egli~LLd~FFeM~~~Da~kaleIYkRf~kQ~e~L~~FY~~Ck~l 307 (628)
+++|++.+.+.+|+|+++||++||+|||+||+++|+||++|||+||||++.||++||+||+||.+|+++|++||++||++
T Consensus 192 ll~~~~~~~~~~n~~~~~Al~llv~Ds~~lY~~i~~gi~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~ 271 (299)
T 1hx8_A 192 LLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENV 271 (299)
T ss_dssp HHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCCCChhhhhchhhhhhh
Q 045671 308 GIARSSEFPEVQRITDKLLGTLDGFLKE 335 (628)
Q Consensus 308 ~~~r~~eiP~L~~~P~~lL~tLEEyIrd 335 (628)
+|++ ++||+|+++|++||++|||||++
T Consensus 272 ~~~~-~~iP~L~~~p~~ll~~Lee~l~~ 298 (299)
T 1hx8_A 272 GIDK-GDIPDLTKAPSSLLDALEQHLAT 298 (299)
T ss_dssp TCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred CcCC-CCCCCCCCCCHHHHHHHHHHHhh
Confidence 9977 89999999999999999999986
No 2
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=100.00 E-value=3.1e-68 Score=556.69 Aligned_cols=283 Identities=21% Similarity=0.342 Sum_probs=236.1
Q ss_pred CChhHHHHHHHHhhhcchhhhhhhcCCCChhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCC
Q 045671 1 MAPSTIRKAIGAVKDQTSISLAKVAGNIAPDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKT 80 (628)
Q Consensus 1 m~~~~~Rka~GalKDqtsiglAkv~~~~~~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kT 80 (628)
|++++++.-+.|.|. .| ..+++++||+|||+|+++|||+||||+||.+|+.+++++.+|+++|.+|++ +
T Consensus 8 ~~~~~~~~~~~~~~~-------~~---~~s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~-~ 76 (310)
T 3zym_A 8 MSGQSLTDRITAAQH-------SV---TGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT-N 76 (310)
T ss_dssp ----CHHHHHHHHHH-------CC---HHHHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTT-S
T ss_pred cccccHHHHHHHHHh-------cc---cccHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcC-C
Confidence 777888887777775 22 127899999999999999999999999999999999999999999999998 8
Q ss_pred CChHHHHHHHHHHHHHHhcCCchHHHHHHHHHhcCcccccccccccccCCCCCCcchHHHHHHHHHHHhhh-hHHhhhhc
Q 045671 81 HDWIVAVKALMLVHKLLLDGHLLFEDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVE-FVVYEKKM 159 (628)
Q Consensus 81 rnWiVAlKaLIlIHRLLreGdp~f~~El~~~srrg~rilnLs~F~D~s~s~swdysafVR~Ya~YLdeRLe-f~~~~~~~ 159 (628)
+||+|+||+|||||||||||||.|.+++ .+++ ++++|++|+|++++.+|||+.|||.|++||++|+. ||.++.+
T Consensus 77 ~~w~vv~KaLivlH~llreG~~~~l~~~---~~~~-~~~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL~~Rl~~f~~~~~d- 151 (310)
T 3zym_A 77 SSWVVVFKSLITTHHLMVYGNERFIQYL---ASRN-TLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFD- 151 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHHHH---HHCS-CCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred CchHHHHHHHHHHHHHHhcCCHHHHHHH---HhCC-CeeecccccCCCCcCcccccHHHHHHHHHHHHHHHHHHHhCCC-
Confidence 9999999999999999999999998876 3444 69999999998877789999999999999999999 9998653
Q ss_pred cCCCCccccccccccCcccccccccccccCCcchhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHccccCCCccC
Q 045671 160 RGGEGKVEEREDRFRDDFDRGMELRSQSYGDVSESVRREERREATPMREMRPERVLARLNQLLRILDKVLACRPTGAAKN 239 (628)
Q Consensus 160 ~g~~~~~~~~~~~~~~~~~~~e~~r~rs~~~~~~~~~~~~~~~~~~~r~l~~e~LL~~L~~LQ~LLdrll~crp~g~a~~ 239 (628)
|. ... | ....++++|++++||++++.||+|||++++|+|.+.+.+
T Consensus 152 ------~~-------~~~------~----------------~~~~~~r~~~~~~Ll~~l~~lQ~lid~ll~~~~~~~~~~ 196 (310)
T 3zym_A 152 ------FT-------KVK------R----------------GADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELT 196 (310)
T ss_dssp ------TT-------TSC------C----------------STTSHHHHCCHHHHHHHHHHHHHHHHHHHTSCCCGGGCC
T ss_pred ------cc-------ccc------C----------------CCCCccccCCHHHHHHHHHHHHHHHHHHHcCCccccccc
Confidence 21 101 0 012357889999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCC
Q 045671 240 SRLVLVALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIARSSEFPEVQ 319 (628)
Q Consensus 240 N~lvl~AL~llVkDSf~LY~~i~egli~LLd~FFeM~~~Da~kaleIYkRf~kQ~e~L~~FY~~Ck~l~~~r~~eiP~L~ 319 (628)
|+|+++||++||+|||+||+++|+||++|||+||||++.||++||+||+||.+|+++|++||++||++++.+. +||+|+
T Consensus 197 N~l~~~A~~llv~ds~~lY~~inegii~lLe~ffem~~~da~~al~iykrf~~Q~e~L~~Fy~~ck~l~l~~~-~iP~L~ 275 (310)
T 3zym_A 197 NGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRG-DISGSG 275 (310)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997765 999999
Q ss_pred CCChhhhhchhhhhhh
Q 045671 320 RITDKLLGTLDGFLKE 335 (628)
Q Consensus 320 ~~P~~lL~tLEEyIrd 335 (628)
++|++++..++.-|.+
T Consensus 276 ~~p~d~l~~lq~~i~e 291 (310)
T 3zym_A 276 SGHMDRVRNLQSEVEG 291 (310)
T ss_dssp --------CHHHHHHH
T ss_pred cccchHHHHHHHHHHH
Confidence 9999999999988876
No 3
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=100.00 E-value=3.8e-66 Score=531.78 Aligned_cols=261 Identities=23% Similarity=0.384 Sum_probs=233.1
Q ss_pred CChhHHHHHHHHhhhcchhhhhhhcCCCChhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCC
Q 045671 1 MAPSTIRKAIGAVKDQTSISLAKVAGNIAPDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKT 80 (628)
Q Consensus 1 m~~~~~Rka~GalKDqtsiglAkv~~~~~~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kT 80 (628)
|++++++.-+.+.|. .|.+ +++++||+|||+|+++|||+||||+||.+|+.+++++.+|+++|.+|++ +
T Consensus 8 ~~~~~~~~~~~~~~~-------~~~~---s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~-~ 76 (271)
T 3zyl_A 8 MSGQSLTDRITAAQH-------SVTG---SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT-N 76 (271)
T ss_dssp ----CHHHHHHHHHH-------HHHH---HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTT-S
T ss_pred cccccHHHHHHHHHh-------cccc---hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhC-C
Confidence 677788888877776 2222 7899999999999999999999999999999999999999999999998 8
Q ss_pred CChHHHHHHHHHHHHHHhcCCchHHHHHHHHHhcCcccccccccccccCCCCCCcchHHHHHHHHHHHhhh-hHHhhhhc
Q 045671 81 HDWIVAVKALMLVHKLLLDGHLLFEDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVE-FVVYEKKM 159 (628)
Q Consensus 81 rnWiVAlKaLIlIHRLLreGdp~f~~El~~~srrg~rilnLs~F~D~s~s~swdysafVR~Ya~YLdeRLe-f~~~~~~~ 159 (628)
+||+|+||+|||||||||||||.|.+++ .+++ ++++|++|+|++++.+|||++|||.|++||++|+. ||.++.+
T Consensus 77 ~~w~v~~KaLivlH~llreG~~~~l~~~---~~~~-~~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL~eRl~~f~~~~~d- 151 (271)
T 3zyl_A 77 SSWVVVFKSLITTHHLMVYGNERFIQYL---ASRN-TLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFD- 151 (271)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHHHH---HHCS-CCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-
T ss_pred CchHHHHHHHHHHHHHHhcCCHHHHHHH---HhCC-CeechhccCCCCCCCcccccHHHHHHHHHHHHHHHHHHHhCCC-
Confidence 9999999999999999999999998887 3445 69999999999877889999999999999999998 9998754
Q ss_pred cCCCCccccccccccCcccccccccccccCCcchhhhhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHccccCCCccC
Q 045671 160 RGGEGKVEEREDRFRDDFDRGMELRSQSYGDVSESVRREERREATPMREMRPERVLARLNQLLRILDKVLACRPTGAAKN 239 (628)
Q Consensus 160 ~g~~~~~~~~~~~~~~~~~~~e~~r~rs~~~~~~~~~~~~~~~~~~~r~l~~e~LL~~L~~LQ~LLdrll~crp~g~a~~ 239 (628)
|. ..+ | ....++++|++++||++++.||+|||++++|+|.+.+.+
T Consensus 152 ------~~-------~~k------~----------------~~~~~~r~~~~~~Ll~~l~~lQ~lld~ll~~~~~~~~~~ 196 (271)
T 3zyl_A 152 ------FT-------KVK------R----------------GADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELT 196 (271)
T ss_dssp ------TT-------TSC------C----------------STTSHHHHCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCC
T ss_pred ------cc-------ccC------C----------------CCCCccccCCHHHHHHHHHHHHHHHHHHHccCccccccc
Confidence 21 101 0 012357889999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccc
Q 045671 240 SRLVLVALYLVVKDSFGLYVDICEALGVLLDKFTEMEYADCVRGFEAYVSAAKMIDELVGFYGWCKDIGIARS 312 (628)
Q Consensus 240 N~lvl~AL~llVkDSf~LY~~i~egli~LLd~FFeM~~~Da~kaleIYkRf~kQ~e~L~~FY~~Ck~l~~~r~ 312 (628)
|+|+++||++||+|||+||++||+||++|||+||||++.||++||+||+||.+|+++|++||++||++|++|.
T Consensus 197 N~li~~A~~lLv~es~~lY~~in~gii~lLe~ffem~~~da~~aleiykrf~~Q~~~L~~Fy~~ck~~gi~~~ 269 (271)
T 3zyl_A 197 NGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRG 269 (271)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875
No 4
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=99.44 E-value=4.8e-13 Score=125.62 Aligned_cols=119 Identities=24% Similarity=0.222 Sum_probs=99.5
Q ss_pred CChhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCC-CChHHHHHHHHHHHHHHhcCCchHHH
Q 045671 28 IAPDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKT-HDWIVAVKALMLVHKLLLDGHLLFED 106 (628)
Q Consensus 28 ~~~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kT-rnWiVAlKaLIlIHRLLreGdp~f~~ 106 (628)
.+++.++.|..|||++..+|+.+++.+|..+|+.. ..+..++..|.+||... ++|.+++|+|+|||.||+.|++.|..
T Consensus 2 ~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~-~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~ 80 (144)
T 1eyh_A 2 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV-VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQ 80 (144)
T ss_dssp CCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSH-HHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCH-hhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHH
Confidence 47899999999999999999999999999999876 45788999999999742 58999999999999999999999988
Q ss_pred HHHHHHhcCcccccccccccccCCCCCCcchHHHHHHHHHHHhhh
Q 045671 107 EIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVE 151 (628)
Q Consensus 107 El~~~srrg~rilnLs~F~D~s~s~swdysafVR~Ya~YLdeRLe 151 (628)
++.... ..|..|.+|.-.. ..+.|++..||.+|++|.+-|.
T Consensus 81 ~~~~~~---~~i~~L~~F~y~d-~~g~D~G~~VR~kak~l~~Ll~ 121 (144)
T 1eyh_A 81 QCKENM---YAVQTLKDFQYVD-RDGKDQGVNVREKAKQLVALLR 121 (144)
T ss_dssp HHHHTH---HHHHGGGGCCCBC-TTSCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHhh---HHHhhhccceeeC-CCccchHHHHHHHHHHHHHHHC
Confidence 874322 2467888874211 2457899999999999976654
No 5
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=99.42 E-value=7.5e-13 Score=124.80 Aligned_cols=119 Identities=24% Similarity=0.222 Sum_probs=99.5
Q ss_pred CCChhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccC-CCChHHHHHHHHHHHHHHhcCCchHH
Q 045671 27 NIAPDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSK-THDWIVAVKALMLVHKLLLDGHLLFE 105 (628)
Q Consensus 27 ~~~~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~k-TrnWiVAlKaLIlIHRLLreGdp~f~ 105 (628)
..++++++.|..|||++..+|+.|++.+|..+|+.. ..+..++..|.+||.. .++|.+++|+|+|||.||+.|.+.|.
T Consensus 19 ~~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~-~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~vv 97 (148)
T 1inz_A 19 HNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV-VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVS 97 (148)
T ss_dssp SSCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSS-HHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH-hhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHHH
Confidence 356899999999999999999999999999999986 5578899999999974 36999999999999999999999998
Q ss_pred HHHHHHHhcCcccccccccccccCCCCCCcchHHHHHHHHHHHhh
Q 045671 106 DEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKV 150 (628)
Q Consensus 106 ~El~~~srrg~rilnLs~F~D~s~s~swdysafVR~Ya~YLdeRL 150 (628)
.++.... ..|..|.+|.-.. ..+.|++..||.+|++|.+-|
T Consensus 98 ~~~r~~~---~~I~~L~~F~y~d-~~g~D~G~nVR~kAk~l~~LL 138 (148)
T 1inz_A 98 QQCKENM---YAVQTLKDFQYVD-RDGKDQGVNVREKAKQLVALL 138 (148)
T ss_dssp HHHHHTH---HHHHHHHHCCCCC-SSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhH---HHHHhhcceeeeC-CCCcCchHHHHHHHHHHHHHh
Confidence 8874222 1366777764211 246789999999999998765
No 6
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=99.08 E-value=4.6e-10 Score=106.02 Aligned_cols=120 Identities=22% Similarity=0.171 Sum_probs=96.5
Q ss_pred CCChhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCC--CChHHHHHHHHHHHHHHhcCCchH
Q 045671 27 NIAPDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKT--HDWIVAVKALMLVHKLLLDGHLLF 104 (628)
Q Consensus 27 ~~~~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kT--rnWiVAlKaLIlIHRLLreGdp~f 104 (628)
..+++.++.|..|||.+..+|..+++.+|..+|+.. ..+..++..|.+||... ++|.+++|+|+||+.||+.|.+.|
T Consensus 7 ~~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~-~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~v 85 (150)
T 3onk_A 7 PNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNF-REREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSERF 85 (150)
T ss_dssp -CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSH-HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH-HHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHHH
Confidence 357899999999999999999999999999999876 34678999999999742 589999999999999999999999
Q ss_pred HHHHHHHHhcCcccccccccccccCCCCCCcchHHHHHHHHHHHhhh
Q 045671 105 EDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVE 151 (628)
Q Consensus 105 ~~El~~~srrg~rilnLs~F~D~s~s~swdysafVR~Ya~YLdeRLe 151 (628)
..++..+. ..|-.|.+|.-.. ..+-|++.-||..|+.|.+-|.
T Consensus 86 v~~~r~~~---~~i~~L~~F~~~d-~~G~D~G~~VR~kak~l~~LL~ 128 (150)
T 3onk_A 86 IDDTRNSI---NLIRILETFHYID-SQGRDQGINVRTRVKALIELLS 128 (150)
T ss_dssp HHHHHTTH---HHHHGGGGCCCBC-TTSCBCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH---HHHHhhhcccccC-CCCCchHHHHHHHHHHHHHHHc
Confidence 88873221 1233466664221 2457899999999999976553
No 7
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=99.08 E-value=8.3e-10 Score=106.74 Aligned_cols=120 Identities=17% Similarity=0.157 Sum_probs=97.8
Q ss_pred CCChhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhc-cC-CCChHHHHHHHHHHHHHHhcCCchH
Q 045671 27 NIAPDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRL-SK-THDWIVAVKALMLVHKLLLDGHLLF 104 (628)
Q Consensus 27 ~~~~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL-~k-TrnWiVAlKaLIlIHRLLreGdp~f 104 (628)
..+++.++.|..|||.|..+|..+++.+|..+|+... .+..++..|.+|| .. .++|.+++|+|+||+.||+.|++.|
T Consensus 30 ~~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~-~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~v 108 (176)
T 1xgw_A 30 MNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYE-QFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERV 108 (176)
T ss_dssp CCCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTT-THHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChh-hHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHHH
Confidence 3568999999999999999999999999999999874 5688999999996 42 4899999999999999999999999
Q ss_pred HHHHHHHHhcCcccccccccccccCCCCCCcchHHHHHHHHHHHhhh
Q 045671 105 EDEIVYSTRRGMRLLNMSDFRDEAHSNSWDHGGFVRFYAMYLDEKVE 151 (628)
Q Consensus 105 ~~El~~~srrg~rilnLs~F~D~s~s~swdysafVR~Ya~YLdeRLe 151 (628)
..++.... ..|-.|.+|.-- ...+.|++..||..|+.|.+-|.
T Consensus 109 v~~~r~~i---~~I~~L~~F~y~-D~~G~D~G~~VR~kAk~i~~LL~ 151 (176)
T 1xgw_A 109 VTSAREHI---YDLRSLENYHFV-DEHGKDQGINIRQKVKELVEFAQ 151 (176)
T ss_dssp HHHHHHTH---HHHHGGGGCCCB-CTTSCBCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhH---HHHHhhccCeeE-CCCCCChHHHHHHHHHHHHHHHC
Confidence 88873211 123456677421 12457899999999999976654
No 8
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=98.39 E-value=1.7e-06 Score=80.81 Aligned_cols=115 Identities=22% Similarity=0.157 Sum_probs=94.7
Q ss_pred HHHHHHhhcCCCCCCCChhhHHHHHHHHccCCcc-HHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 045671 32 LEVLVVKATSHDDEPADDKYVREIVSLMSYSRGY-VSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEIVY 110 (628)
Q Consensus 32 LdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~-v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El~~ 110 (628)
-.+.|.+||+.++.||---=..+|-..|+.+... +.+++..|.+||.+ ++|.|.+|+|-+|-.|++.|++.|..++..
T Consensus 12 ~~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~-k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~ 90 (140)
T 1vdy_A 12 RSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDN-KSPIVKQKALRLIKYAVGKSGSEFRREMQR 90 (140)
T ss_dssp HHHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcC-CCcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence 3567999999999999988899999999988643 58899999999985 799999999999999999999999999853
Q ss_pred HHhcCcccccccccccccCC-CCCCcchHHHHHHHHHHHhh
Q 045671 111 STRRGMRLLNMSDFRDEAHS-NSWDHGGFVRFYAMYLDEKV 150 (628)
Q Consensus 111 ~srrg~rilnLs~F~D~s~s-~swdysafVR~Ya~YLdeRL 150 (628)
.. ..|..+.+|+....+ .+++.+..||.-|+=|.+-|
T Consensus 91 ~~---~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 91 NS---VAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp TT---HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred hH---HHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 32 246677788754332 56889999999998776543
No 9
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=96.29 E-value=0.015 Score=54.82 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=70.0
Q ss_pred hHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 045671 31 DLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEI 108 (628)
Q Consensus 31 dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El 108 (628)
.++..|.|||+....-++--.+-+|............+++++|.+||...+|..|++-+|.|+.-++..+.+.|..|+
T Consensus 16 ~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~ev 93 (157)
T 1elk_A 16 PVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLV 93 (157)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 789999999999888889888888888877776778999999999997457999999999999999999999998887
No 10
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=96.17 E-value=0.018 Score=53.30 Aligned_cols=77 Identities=26% Similarity=0.291 Sum_probs=69.6
Q ss_pred hHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 045671 31 DLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEI 108 (628)
Q Consensus 31 dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El 108 (628)
.++..|.|||+....-++--.+-+|............+++++|.+||. .+|..|++-+|.|+.-++..+.+.|..|+
T Consensus 5 p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~-~~n~~~ql~AL~LLe~~vkNcG~~f~~ev 81 (140)
T 3ldz_A 5 PFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVN-HKDPHVAMQALTLLGACVSNCGKIFHLEV 81 (140)
T ss_dssp TTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 478999999999998899999999988888777777899999999997 57999999999999999999999888777
No 11
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=96.02 E-value=0.019 Score=54.57 Aligned_cols=78 Identities=23% Similarity=0.247 Sum_probs=69.2
Q ss_pred hhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 045671 30 PDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEI 108 (628)
Q Consensus 30 ~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El 108 (628)
..++..|.|||+....-++--.+-+|............+++++|.+||. .+|..|++-+|.|+.-++..+.+.|..|+
T Consensus 14 ~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~-~~n~~vql~AL~LLd~~vkNcG~~Fh~ev 91 (163)
T 1x5b_A 14 NPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVN-HKVPHVALQALTLLGACVANCGKIFHLEV 91 (163)
T ss_dssp CTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3588999999999888899999999888887777778999999999997 58899999999999999999888888776
No 12
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=96.01 E-value=0.025 Score=53.00 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=71.9
Q ss_pred ChhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 045671 29 APDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEI 108 (628)
Q Consensus 29 ~~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El 108 (628)
...++..|.|||+....-|+--.+-+|-...........+++++|.+||. .+|..|++-+|.|+.-++..+.+.|..|+
T Consensus 9 ~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~-~~n~~v~l~AL~LLe~cvkNCG~~fh~ei 87 (149)
T 3g2s_A 9 PETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQ-SPQEWEAIQALTVLETCMKSCGKRFHDEV 87 (149)
T ss_dssp CCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 36799999999999998899999999988887777777899999999997 68999999999999999999999998877
No 13
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=96.01 E-value=0.024 Score=53.31 Aligned_cols=79 Identities=18% Similarity=0.156 Sum_probs=70.8
Q ss_pred hhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 045671 30 PDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEI 108 (628)
Q Consensus 30 ~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El 108 (628)
+.++..|.|||+....-++--.+-+|-...........+++++|.+||....|..|++-+|.|+--++..+...|..|+
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~ei 93 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLI 93 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4789999999999998899999988888877777778999999999997556888999999999999999999999888
No 14
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=95.91 E-value=0.02 Score=54.81 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=70.2
Q ss_pred hhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 045671 30 PDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEI 108 (628)
Q Consensus 30 ~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El 108 (628)
+.++..|.|||+....-++--.+-+|.............++++|.+||. .+|-.|++-+|.|+.-|+..+...|..|+
T Consensus 12 s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~-~~n~~vql~AL~LLd~~vkNCG~~Fh~ev 89 (171)
T 1juq_A 12 ESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQ-SPQEWEALQALTVLEACMKNCGRRFHNEV 89 (171)
T ss_dssp CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 4699999999999988899999999988887776677899999999997 68999999999999999999888888777
No 15
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=95.88 E-value=0.023 Score=53.17 Aligned_cols=76 Identities=14% Similarity=0.101 Sum_probs=68.7
Q ss_pred HHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 045671 32 LEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEI 108 (628)
Q Consensus 32 LdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El 108 (628)
|+..|.|||+....-|+--.+-+|.............++++|.+||. .+|..|++-+|.|+.-++..+.+.|..|+
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~ev 77 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQ-SPQEKEALYALTVLEMCMNHCGEKFHSEV 77 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 78899999999888899999989888887766667899999999997 68999999999999999999989998887
No 16
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=95.75 E-value=0.03 Score=55.64 Aligned_cols=79 Identities=22% Similarity=0.208 Sum_probs=70.0
Q ss_pred ChhHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 045671 29 APDLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEI 108 (628)
Q Consensus 29 ~~dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El 108 (628)
.+.|+..|.|||+....-++--.+-+|-...........+++++|.+||. .+|..|++-+|.|+.-++..+...|..|+
T Consensus 6 ~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~-~~n~~v~l~aL~LLe~~vkNcG~~f~~ei 84 (226)
T 3zyq_A 6 SGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVN-DKNPHVALYALEVMESVVKNCGQTVHDEV 84 (226)
T ss_dssp -CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcchHHHHhh
Confidence 36899999999999998899999999888887766667899999999997 68999999999999999999888887776
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=95.27 E-value=0.051 Score=53.58 Aligned_cols=77 Identities=14% Similarity=0.105 Sum_probs=68.8
Q ss_pred hHHHHHHhhcCCCCCCCChhhHHHHHHHHccCCccHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 045671 31 DLEVLVVKATSHDDEPADDKYVREIVSLMSYSRGYVSACIATISKRLSKTHDWIVAVKALMLVHKLLLDGHLLFEDEI 108 (628)
Q Consensus 31 dLdvAIvKATshde~PPKeKHVr~IL~~Ts~sr~~v~~~v~aLsrRL~kTrnWiVAlKaLIlIHRLLreGdp~f~~El 108 (628)
.++..|.|||+....-++-..+-+|............+++.+|.+||. .+|-.|++-+|.|+--++..+.+.|..|+
T Consensus 5 ~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~-~~n~~~~l~aL~Lle~~vkNcG~~f~~ev 81 (220)
T 1dvp_A 5 SFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMN-SPNPHSSCYSLLVLESIVKNCGAPVHEEV 81 (220)
T ss_dssp HHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 389999999999988899999999988887777778999999999997 58999999999999999999878787766
No 18
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=54.60 E-value=4.8 Score=26.64 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=10.5
Q ss_pred HHHHHHHhcCCch
Q 045671 91 MLVHKLLLDGHLL 103 (628)
Q Consensus 91 IlIHRLLreGdp~ 103 (628)
-++||||++|.|.
T Consensus 13 kILHrLLQ~~sP~ 25 (26)
T 3bej_E 13 KILHRLLQEGSPS 25 (26)
T ss_pred HHHHHHHHcCCCC
Confidence 3689999999773
No 19
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=39.15 E-value=32 Score=23.29 Aligned_cols=20 Identities=50% Similarity=0.944 Sum_probs=10.8
Q ss_pred CCCCCCCCcCCCC-CCCCCCC
Q 045671 603 SMMPYGMPQVTGM-GQPGPGG 622 (628)
Q Consensus 603 ~~~~~~~~~~~~~-~~~~~~~ 622 (628)
|.-|-|-|++-|. |+|||+|
T Consensus 5 ppgprgqpgvmgfpgppgppg 25 (31)
T 4gyx_A 5 PPGPRGQPGVMGFPGPPGPPG 25 (31)
T ss_dssp CCCCCCCCCCCCCCCCCCCCC
T ss_pred CCCCCCCCccccCCCCCCCCC
Confidence 3336677776554 4445554
No 20
>2prg_C Nuclear receptor coactivator SRC-1, peroxisome proliferator activated receptor gamma; complex (thiazolidinedione/receptor), ligand-binding domain; HET: BRL; 2.30A {Homo sapiens} SCOP: j.112.1.1
Probab=29.33 E-value=19 Score=30.70 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=10.3
Q ss_pred HHHHHHhcCCch
Q 045671 92 LVHKLLLDGHLL 103 (628)
Q Consensus 92 lIHRLLreGdp~ 103 (628)
++||||++|.|.
T Consensus 67 ILHrLLQ~gSP~ 78 (88)
T 2prg_C 67 ILHRLLQEGSPS 78 (88)
T ss_dssp HHHHHHHSSCCC
T ss_pred HHHHHHhcCChH
Confidence 589999999774
Done!