BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045672
         (643 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  973 bits (2515), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/641 (71%), Positives = 544/641 (84%), Gaps = 18/641 (2%)

Query: 3   LKAVSKLKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAM 62
           +KA+SKLK  KP  +                    + S L+++F  FC+Q DL RAM+AM
Sbjct: 1   MKAISKLKGMKPPLR-----------------YVADPSPLVNEFANFCHQWDLHRAMRAM 43

Query: 63  HAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF 122
            AM+ HGV AD++TY+ELIKCC AR AV+E K VH H+   G+EP+ F+VN LLNM+VKF
Sbjct: 44  DAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKF 103

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
           +LLEEA+ LFD+MPERNVVSWTTMISAY + K+NDKAL+ LI M REGVRPNMFTYS+VL
Sbjct: 104 NLLEEAEDLFDEMPERNVVSWTTMISAYSN-KLNDKALKCLILMFREGVRPNMFTYSSVL 162

Query: 183 RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
           RACD L  LRQLHCGIIK G ESDVFVRSALID+Y+K  +L NA  VF+EMPTRDLVVWN
Sbjct: 163 RACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWN 222

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY 302
           SIIGGFAQNSD +EALNL+KRMKRAGF ADQ+TLTSVLRACTGLALLELG QVHVHVLK+
Sbjct: 223 SIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKF 282

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           D DLILNNAL+DMYCKCGSLEDA S FSRM++KDVISWSTM++GLAQNGYS++AL+LFES
Sbjct: 283 DQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFES 342

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           MK S  +PNYIT++GVLFACSHAG VE GW +F+SMKK +G+DPGREHY C+IDLLGRAG
Sbjct: 343 MKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAG 402

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
           +L EAVKLIHEM  EPD+VTWR LLGAC+VHRN DLAI AAKKI+ L+P+D GTYILLSN
Sbjct: 403 RLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSN 462

Query: 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKH 542
           IYAN+Q+W++VAEVRKTM  RGI K PGCSWIEV+KQIH F + D+SHP+I++I + L  
Sbjct: 463 IYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLND 522

Query: 543 LIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
           LI++++GVGY PDTN+VLQDLEGEQKEDS++YHSEKLAI+FGLM+L++ KT+RIRKNLRI
Sbjct: 523 LIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRI 582

Query: 603 CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           CGDCH FAK+ ++ME+++IVIRDPIRYHHFQDG CSCGDYW
Sbjct: 583 CGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/586 (74%), Positives = 508/586 (86%), Gaps = 1/586 (0%)

Query: 59  MKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118
           MKAM AM  + + AD++TY+ELIKCCL R AV++A+LVH HV S G+EP+TFL+N L+NM
Sbjct: 1   MKAMEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINM 60

Query: 119 HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTY 178
           +VKF LL+EA+ LFD+MP+RNVVSWTTMISAY ++ +N KAL+ LI MLREGVRPNM+TY
Sbjct: 61  YVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTY 120

Query: 179 SAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
           S+VLRACD L+ LRQLH  I+KVG ESDVFVRSALID Y+KLGE  +A  VFNEM T DL
Sbjct: 121 SSVLRACDGLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDL 180

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           VVWNSIIGGFAQNSD DE L+LYKRMKRA F ADQSTLTSVLRACTGLALLELG QVHVH
Sbjct: 181 VVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVH 240

Query: 299 VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI-QKDVISWSTMISGLAQNGYSQEAL 357
           VLKYD DLILNNALLDMYCKCGSLEDA  +F+RM+ +KDVISWSTMI+GLAQNG+S +AL
Sbjct: 241 VLKYDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADAL 300

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
           KLFE+MK    KPNYITI+GVLFACSHAG V DGW +F+SMK+ +GIDPGREHY C+IDL
Sbjct: 301 KLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDL 360

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           LGRAGKL EAVKLIHEM +EPDAVTWR LLGAC+VH+N DLAI AAK+IL LDP D GTY
Sbjct: 361 LGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTY 420

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           ILLSNIYANSQKW++VAEVR+ MR RG+ K+PGCSWIEV+KQ+HAF + D+SHP+I++I 
Sbjct: 421 ILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIK 480

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
           + L  LIQ+L+ +GY PDTN+VLQDLEGEQ EDS+QYHSEKLAIVFGLMSL   KTI IR
Sbjct: 481 RELSQLIQRLMRLGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIR 540

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLRICGDCH FAKL +++EN+ IVIRDPIRYHHF+ G CSCGDYW
Sbjct: 541 KNLRICGDCHIFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 160/322 (49%), Gaps = 15/322 (4%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+  +  M   GVR +  TY+ +++ C     +   + +H  +L  G E + F+ + L+
Sbjct: 100 KALDFLILMLREGVRPNMYTYSSVLRAC---DGLLNLRQLHGSILKVGLESDVFVRSALI 156

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           + + K     +A  +F++M   ++V W ++I  +      D+ L L   M R     +  
Sbjct: 157 DTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQS 216

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T ++VLRAC  L +L   RQ+H  ++K  ++ D+ + +AL+D+Y K G L +A  +F  M
Sbjct: 217 TLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANLLFTRM 274

Query: 234 PT-RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
            T +D++ W+++I G AQN    +AL L++ MK  G   +  T+  VL AC+   L+  G
Sbjct: 275 MTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDG 334

Query: 293 ---TQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK-DVISWSTMISGLA 348
               Q        D        ++D+  + G L++A+ +   M  + D ++W  ++   A
Sbjct: 335 WYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLG--A 392

Query: 349 QNGYSQEALKLFESMKVSRIKP 370
              +    L ++ + ++ ++ P
Sbjct: 393 CRVHKNVDLAIYAAKEILKLDP 414


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/618 (69%), Positives = 511/618 (82%), Gaps = 2/618 (0%)

Query: 28  PVAS--CNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCL 85
           PV +  C+  + + + LL +FTR CYQRDLPRAMKAM ++Q HG+ ADS TY+ELIKCC+
Sbjct: 13  PVVTLRCSYSSTDQTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCI 72

Query: 86  ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTT 145
           +  AV E  L+  H+   G  P  FLVN+L+NM+VKF+LL +A  LFDQMP+RNV+SWTT
Sbjct: 73  SNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTT 132

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFES 205
           MISAY   K++ KALELL+ MLR+ VRPN++TYS+VLR+C+ +  +R LHCGIIK G ES
Sbjct: 133 MISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLES 192

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           DVFVRSALID++AKLGE  +A  VF+EM T D +VWNSIIGGFAQNS  D AL L+KRMK
Sbjct: 193 DVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMK 252

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDA 325
           RAGF A+Q+TLTSVLRACTGLALLELG Q HVH++KYD DLILNNAL+DMYCKCGSLEDA
Sbjct: 253 RAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDA 312

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
           + VF++M ++DVI+WSTMISGLAQNGYSQEALKLFE MK S  KPNYITIVGVLFACSHA
Sbjct: 313 LRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHA 372

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G +EDGW +F+SMKK YGIDP REHY CMIDLLG+AGKL +AVKL++EM  EPDAVTWR 
Sbjct: 373 GLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRT 432

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LLGAC+V RN  LA  AAKK++ LDP+D GTY LLSNIYANSQKWD V E+R  MR RGI
Sbjct: 433 LLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGI 492

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            KEPGCSWIEVNKQIHAF + D+SHPQI +++K L  LI +L G+GY P+TN+VLQDLEG
Sbjct: 493 KKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEG 552

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           EQ EDS+++HSEKLA+ FGLM+L   K IRIRKNLRICGDCH F KL +K+E ++IVIRD
Sbjct: 553 EQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRD 612

Query: 626 PIRYHHFQDGNCSCGDYW 643
           PIRYHHFQDG CSCGDYW
Sbjct: 613 PIRYHHFQDGKCSCGDYW 630


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  920 bits (2378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/618 (69%), Positives = 510/618 (82%), Gaps = 2/618 (0%)

Query: 28  PVAS--CNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCL 85
           PV +  C+  + + + LL +FTR CYQRDLPRAMKAM ++Q HG+ ADS TY+ELIKCC+
Sbjct: 13  PVVTLRCSYSSTDQTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCI 72

Query: 86  ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTT 145
           +  AV E  L+  H+   G  P  FLVN+L+NM+VKF+LL +A  LFDQMP+RNV+SWTT
Sbjct: 73  SNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTT 132

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFES 205
           MISAY   K++ KALELL+ MLR+ VRPN++TYS+VLR+C+ +  +R LHCGIIK G ES
Sbjct: 133 MISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLES 192

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           DVFVRSALID++AKLGE  +A  VF+EM T D +VWNSIIGGFAQNS  D AL L+KRMK
Sbjct: 193 DVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMK 252

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDA 325
           RAGF A+Q+TLTSVLRACTGLALLELG Q HVH++KYD DLILNNAL+DMYCKCGSLEDA
Sbjct: 253 RAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDA 312

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
           + VF++M ++DVI+WSTMISGLAQNGYSQEALKLFE MK S  KPNYITIVGVLFACSHA
Sbjct: 313 LRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHA 372

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G +EDGW +F+SMKK YGIDP REHY CMIDLLG+AGKL +AVKL++EM  EPDAVTWR 
Sbjct: 373 GLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRT 432

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LLGAC+V RN  LA  AAKK++ LDP+D GTY LLSNIYANSQKWD V E+R  MR RGI
Sbjct: 433 LLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGI 492

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            KEPGCSWIEVNKQIHAF + D+SHPQI +++K L  LI +L G+GY P+TN+VLQDLEG
Sbjct: 493 KKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEG 552

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           EQ EDS+++HSEKLA+ FGLM+L   K IRIRKNLRICGDCH F KL +K+E ++IVIR 
Sbjct: 553 EQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRG 612

Query: 626 PIRYHHFQDGNCSCGDYW 643
           PIRYHHFQDG CSCGDYW
Sbjct: 613 PIRYHHFQDGKCSCGDYW 630


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  914 bits (2363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/642 (68%), Positives = 519/642 (80%), Gaps = 6/642 (0%)

Query: 3   LKAVSK-LKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKA 61
           ++ VSK L+  +P+S +R  S ++   + S + +   + SLL+     CY+RDLP AM  
Sbjct: 218 MRGVSKHLQLLRPTS-SRCCSYSVNSSLVSPHYVPPETESLLNH----CYRRDLPSAMHV 272

Query: 62  MHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK 121
           + +M+  GV ADS+TY+ELIKCCLA  AV E K VH H+ S G+ P+TFL NIL+NM+VK
Sbjct: 273 LDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVK 332

Query: 122 FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
           F+LLEEAQVLFD+MPERNVVSWTTMISAY +A++ND+A+ LL FM R+GV PNMFT+S+V
Sbjct: 333 FNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSV 392

Query: 182 LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           LRAC+ L  L+QLH  I+KVG ESDVFVRSALID+Y+K+GEL  A  VF EM T D VVW
Sbjct: 393 LRACERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVW 452

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           NSII  FAQ+SD DEAL+LYK M+R GF ADQSTLTSVLRACT L+LLELG Q HVHVLK
Sbjct: 453 NSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK 512

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
           +D DLILNNALLDMYCKCGSLEDA  +F+RM +KDVISWSTMI+GLAQNG+S EAL LFE
Sbjct: 513 FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFE 572

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
           SMKV   KPN+ITI+GVLFACSHAG V +GW +F+SM   YGIDPGREHY CM+DLLGRA
Sbjct: 573 SMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRA 632

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
            KL + VKLIHEM  EPD VTWR LL AC+  +N DLA  AAK+IL LDPQD G Y+LLS
Sbjct: 633 EKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLS 692

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
           NIYA S++W++VAEVR+TM+ RGI KEPGCSWIEVNKQIHAF + D SHPQID+IN+ L 
Sbjct: 693 NIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLN 752

Query: 542 HLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
             I +L G GY PDTN+VLQDLEGEQ+EDS++YHSEKLAIVFG+MS  + KTIRI KNL+
Sbjct: 753 QFICRLAGAGYVPDTNFVLQDLEGEQREDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLK 812

Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           ICGDCH FAKL A++E + IVIRDPIRYHHFQDG CSCGDYW
Sbjct: 813 ICGDCHKFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  880 bits (2275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/534 (77%), Positives = 469/534 (87%)

Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
           FL+NIL+NM+VKF LL +AQ +FD+MP+RNVVSWTTMISAY  AK+NDKALE L+ MLRE
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 170 GVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           GVRPNMFTYS+VLRACD L  LRQLHC IIK+G +SDVFVRSALID+Y++ GEL NA  V
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F+EM T DLVVW+SII GFAQNSD DEAL L+KRMKRAGF A Q+TLTSVLRACTGLALL
Sbjct: 121 FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALL 180

Query: 290 ELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           ELG QVHVHVLKYD DLILNNALLDMYCKCGSLEDA +VF RM++KDVISWSTMI+GLAQ
Sbjct: 181 ELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQ 240

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           NGYS+EALKLFESMKV  IKPNY+TIVGVLFACSHAG VE+G  +F SMK+ +GIDPGRE
Sbjct: 241 NGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGRE 300

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
           HY CMIDLLGRAG+L EAV LI+EM  EPDAVTWRALL AC+VHRN D+AI AAK+IL L
Sbjct: 301 HYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRL 360

Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
           DPQD GTY+LLSNIYAN+Q+W++VAEVR+TM  RGI KEPGCSWIEV+KQIHAF + D S
Sbjct: 361 DPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRS 420

Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
           HPQI +IN  L  LI KL+GVGY PDTN+VLQDLEGEQ +DS++YHSEKLAIVFGLMSL 
Sbjct: 421 HPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLMSLP 480

Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +G+TIRIRKNLRICGDCH F KL AKME + IVIRDP+RYHHFQDG CSCGD+W
Sbjct: 481 RGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 160/298 (53%), Gaps = 14/298 (4%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++ +  M   GVR +  TY+ +++ C     +   + +H  ++  G + + F+ + L+
Sbjct: 49  KALEFLVLMLREGVRPNMFTYSSVLRAC---DGLFNLRQLHCCIIKIGLDSDVFVRSALI 105

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +++ ++  LE A  +FD+M   ++V W+++I+ +      D+AL L   M R G      
Sbjct: 106 DVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQT 165

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T ++VLRAC  L +L   RQ+H  ++K  ++ D+ + +AL+D+Y K G L +A  VF  M
Sbjct: 166 TLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRM 223

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +D++ W+++I G AQN    EAL L++ MK  G   +  T+  VL AC+   L+E G 
Sbjct: 224 VEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGL 283

Query: 294 QVHVHVLK----YDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
             + H +K     D        ++D+  + G L +A+ + + M  + D ++W  +++ 
Sbjct: 284 -YYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNA 340



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 33/270 (12%)

Query: 10  KWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHG 69
           +W +  +  R F   +T  +   ++I             F    D   A++    M+  G
Sbjct: 110 RWGELENALRVFDEMVTGDLVVWSSIIAG----------FAQNSDGDEALRLFKRMKRAG 159

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
             A   T   +++ C     +E  + VH HVL   ++ +  L N LL+M+ K   LE+A 
Sbjct: 160 FLAQQTTLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDAN 217

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            +F +M E++V+SW+TMI+       + +AL+L   M   G++PN  T   VL AC    
Sbjct: 218 AVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACS--- 274

Query: 190 ILRQLHCGIIKVG---FES--DVFV-------RSALIDIYAKLGELRNAECVFNEMPTR- 236
                H G+++ G   F S  ++F           +ID+  + G L  A  + NEM    
Sbjct: 275 -----HAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEP 329

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
           D V W +++     + +VD A++  K++ R
Sbjct: 330 DAVTWRALLNACRVHRNVDVAIHAAKQILR 359


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/579 (71%), Positives = 484/579 (83%)

Query: 62  MHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK 121
           M ++Q HG+ ADS TY+ELIKCCL+  AV E  L+  H+   G +P  FLVN+L+NM+VK
Sbjct: 1   MDSLQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVK 60

Query: 122 FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
           F+LL +A  LFDQMP+RNV+SWTTMISAY   K++ KALELL+ MLR+GVRPN++TYS+V
Sbjct: 61  FNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSV 120

Query: 182 LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           LRAC+ +  +R LHCGIIK G ESDV+VRSALID++AKLGE  +A  VF+EM T D +VW
Sbjct: 121 LRACNGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVW 180

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           NSIIGGFAQNS  D AL L+KRMKRAGF A+Q+TLTSVLRACTGLALLELG Q HVH++K
Sbjct: 181 NSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK 240

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
           YD DLILNNAL+DMYCKCGSLEDA  VF++M ++DVI+WSTMISGLAQNGYSQEALKLFE
Sbjct: 241 YDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFE 300

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            MK S  KPNYITIVGVLFACSHAG +EDGW +F+SMKK YGI+PGREHY CMIDLLG+A
Sbjct: 301 LMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKA 360

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           GKL +AVKL++EM  EPDAVTWR LLGAC+V RN  LA  AAKK++ LDP+D GTY +LS
Sbjct: 361 GKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLS 420

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
           NIYANSQKWD V E+RK MR  GI KEPGCSWIEVNKQIHAF + D SHPQI ++NK L 
Sbjct: 421 NIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLN 480

Query: 542 HLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
            LI +L+G+GY P+TN+VLQDLEGEQ EDS+++HSEKLA+ FGLM+L   K IRIRKNLR
Sbjct: 481 QLIHRLIGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKNLR 540

Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
           ICGDCH F KL +K+EN+ IVIRDPIRYHHFQDG CSCG
Sbjct: 541 ICGDCHVFCKLASKLENRNIVIRDPIRYHHFQDGKCSCG 579



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 160/301 (53%), Gaps = 20/301 (6%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++ +  M   GVR +  TY+ +++ C   + + + +++H  ++  G E + ++ + L+
Sbjct: 97  KALELLVLMLRDGVRPNVYTYSSVLRAC---NGMSDVRMLHCGIIKEGLESDVYVRSALI 153

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           ++  K    E+A  +FD+M   + + W ++I  +     +D ALEL   M R G      
Sbjct: 154 DVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQA 213

Query: 177 TYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T ++VLRAC  L +L    Q H  I+K  ++ D+ + +AL+D+Y K G L +A  VFN+M
Sbjct: 214 TLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDARRVFNQM 271

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             RD++ W+++I G AQN    EAL L++ MK +G   +  T+  VL AC+   LLE G 
Sbjct: 272 KERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGW 331

Query: 294 QVHVHVLKY-------DHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMIS 345
                + K        +H       ++D+  K G L+DA+ + + M  + D ++W T++ 
Sbjct: 332 YYFRSMKKLYGINPGREH----YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLG 387

Query: 346 G 346
            
Sbjct: 388 A 388


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/607 (56%), Positives = 438/607 (72%), Gaps = 9/607 (1%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHV----- 100
           F+R C +   P A+  +  +   G+RAD V+   L+K C+      + +L+H HV     
Sbjct: 44  FSRLCVEGPFPAALALLPDLAAAGLRADPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQ 103

Query: 101 ---LSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK-MN 156
               SGG     F+ N L++M+ KF LL++A  LFD+MPERNVV+WTT+++A  +A    
Sbjct: 104 LSHYSGGAGGGIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRK 163

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDI 216
           ++AL  L+ M R+GV PN +T+S+VL AC +  +L  LH   +KVG +SDVFVRS+LID 
Sbjct: 164 EEALRFLVAMWRDGVAPNAYTFSSVLGACGTPGVLAALHASTVKVGLDSDVFVRSSLIDA 223

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           Y KLG+L     VF+EM TRDLVVWNSII GFAQ+ D   A+ L+ RMK AGF+A+Q TL
Sbjct: 224 YMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTL 283

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD 336
           TSVLRACTG+ +LE G QVH HVLKY+ DLIL+NALLDMYCKCGSLEDA ++F RM Q+D
Sbjct: 284 TSVLRACTGMVMLEAGRQVHAHVLKYERDLILHNALLDMYCKCGSLEDAEALFHRMPQRD 343

Query: 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
           VISWSTMISGLAQNG S EAL++F+ MK   + PN IT+VGVLFACSHAG VEDGW +F+
Sbjct: 344 VISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFR 403

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
           SMKK +GI P REH++CM+DLLGRAGKL EAV+ I +M  EPDAV WR LLGAC++H++ 
Sbjct: 404 SMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSG 463

Query: 457 DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEV 516
           +LA  AA++IL L+P D G  +LLSN YA+ ++W +  +  K MR RG+ KEPG SWIE+
Sbjct: 464 NLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIEL 523

Query: 517 NKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHS 576
            K +H F   D SHP  D I + L  LI ++  +GY P T +VLQDL  EQKED ++YHS
Sbjct: 524 EKHVHVFIAGDLSHPCSDTIVQELNRLIGRISALGYVPQTEFVLQDLAIEQKEDLLKYHS 583

Query: 577 EKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGN 636
           EK+AI FG M    GK IRI KNLRICGDCH FAKL +K E + I+IRDP+R+HHFQDG 
Sbjct: 584 EKMAIAFGTMHAVGGKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGA 643

Query: 637 CSCGDYW 643
           CSCGDYW
Sbjct: 644 CSCGDYW 650


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/607 (56%), Positives = 437/607 (71%), Gaps = 6/607 (0%)

Query: 43  LDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLS 102
           L  F+R C +  LP A+  +  +   G+RAD V+   L+K C+     +  +L+H HV +
Sbjct: 33  LTTFSRLCVEGPLPAALALLSELAAAGLRADPVSLTRLVKLCVRHGTADHGRLIHRHVEA 92

Query: 103 GGFEPET-----FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK-MN 156
            G  P       F+ N L +M+ KF LL++A  +FD MP RNVV+WTT+++A   A    
Sbjct: 93  HGPLPHDGAGGLFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRK 152

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDI 216
            +AL  L+ M R+GV PN +T+S+VL AC +  +L  +H   +K G +SDVFVRS+LID 
Sbjct: 153 QEALRFLVAMRRDGVAPNAYTFSSVLGACTTPGMLTAVHASTVKAGLDSDVFVRSSLIDA 212

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           Y KLG+L     VF+EM TRDLVVWNSII GFAQ+ D   A+ L+ RMK AGF+++Q TL
Sbjct: 213 YVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTL 272

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD 336
           TSVLRACTG+ +LE G QVH HVLKYD DLIL+NALLDMYCKCGSLEDA ++F RM Q+D
Sbjct: 273 TSVLRACTGMVMLEAGRQVHAHVLKYDRDLILHNALLDMYCKCGSLEDADALFHRMPQRD 332

Query: 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
           VISWSTM+SGLAQNG S EAL++F+ MK   + PN++T+VGVLFACSHAG VEDGW++F+
Sbjct: 333 VISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFR 392

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
           SMK+ +GI P REH++CM+DLLGRAGKL EAV+ IH M  EPD+V WR LLGAC++H+N 
Sbjct: 393 SMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNA 452

Query: 457 DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEV 516
            LA  AA++IL L+P D G  +LLSN YA+ ++W +  +  K MR RG+ KEPG SWIE+
Sbjct: 453 SLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIEL 512

Query: 517 NKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHS 576
            K++H F   D SHP  D I + L  LI ++  +GY P T +VLQDL  EQKED ++YHS
Sbjct: 513 EKRVHVFIAGDLSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHS 572

Query: 577 EKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGN 636
           EK+AIVFG M    GK IRI KNLRICGDCH FAKL +K E + IVIRDP+R+HHFQDG 
Sbjct: 573 EKMAIVFGTMHAVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGA 632

Query: 637 CSCGDYW 643
           CSCGDYW
Sbjct: 633 CSCGDYW 639


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/609 (56%), Positives = 432/609 (70%), Gaps = 7/609 (1%)

Query: 42  LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHV- 100
           L+  F+R C       A+  +  +   GVRAD V+   LIK C+    V + + +H HV 
Sbjct: 34  LVSIFSRLCLDGPFTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIHRHVS 93

Query: 101 -----LSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
                  G      F+ N L++M+ KF +L++A  LF  MP+RNVVSWTT+++A  +A  
Sbjct: 94  LCAHGGGGATHGSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPG 153

Query: 156 NDK-ALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALI 214
             K AL  L+ M R+GV  N +T+S+VL AC +  +L  +H  IIKVG +SDVFVRS+LI
Sbjct: 154 RKKEALRFLVEMRRDGVAANSYTFSSVLGACGTPGVLAAMHADIIKVGLDSDVFVRSSLI 213

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           D Y KLG+L +   VF+EM T DLVVWNSII GFAQ+ D   A+ L+ RMK +GF A+Q 
Sbjct: 214 DAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQG 273

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
           TLTSVLRACTG+ +LE+G QVH HVLKYD DLIL+NALLDMYCKCG L DA ++FSRM  
Sbjct: 274 TLTSVLRACTGMVMLEVGRQVHAHVLKYDRDLILHNALLDMYCKCGCLLDADALFSRMHD 333

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
           +DVISWSTMISGLAQNG S EALK+F+ MK     PN IT+VGVLFACSHAG VEDGW++
Sbjct: 334 RDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHY 393

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR 454
           F+SM K +GI P REH +CM+DLLGRAGKL EA+K I EM +EPD+V WR LLGAC++H+
Sbjct: 394 FRSMDKLFGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHK 453

Query: 455 NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWI 514
           N  LA  AA +IL L+P+D G  ILLSNIYA+ ++W    +  KTMR +G+ KEPG SWI
Sbjct: 454 NATLASYAATEILKLEPEDQGARILLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWI 513

Query: 515 EVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQY 574
           E+ K +H F   + SHP  D+I + L  LI++   +GY P T +VLQDL  EQKED ++Y
Sbjct: 514 ELGKLVHVFIAGELSHPCSDRIVQELNRLIRRAKDLGYVPQTEFVLQDLGTEQKEDLLKY 573

Query: 575 HSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQD 634
           HSEKLAI FG M+  +GK +RI KNLRICGDCH FAKL +K E + I+IRDP+R+HHFQ 
Sbjct: 574 HSEKLAIAFGTMNSMEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQH 633

Query: 635 GNCSCGDYW 643
           G CSCGDYW
Sbjct: 634 GVCSCGDYW 642


>gi|255546694|ref|XP_002514406.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546503|gb|EEF48002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 436

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 274/370 (74%), Positives = 318/370 (85%)

Query: 34  TITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEA 93
           T T NSSSLL +FT FCYQRDLPRAMKAM AM  HG+ ADS TY+ELIKCCLAR+A+E+ 
Sbjct: 17  TATSNSSSLLREFTEFCYQRDLPRAMKAMDAMHKHGIWADSFTYSELIKCCLARNAIEQG 76

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
           K V+ H+ S G++P  FL+N+LLNM+VKF+LL+EA  LFDQMPERNVVSWTTMISA+ +A
Sbjct: 77  KQVYKHLSSNGYQPNIFLINMLLNMYVKFNLLDEALTLFDQMPERNVVSWTTMISAFSNA 136

Query: 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSAL 213
           K+NDKALE LI MLREGV+PN++TYS++LRACD +  LRQLH  IIK G +SDV+VRSAL
Sbjct: 137 KLNDKALEFLICMLREGVKPNVYTYSSILRACDGVYNLRQLHGNIIKSGLDSDVYVRSAL 196

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           IDIY+K GE  NA  VFNEM T DL+VWNSII GFAQN+D DEALNL+K MKR GF A+Q
Sbjct: 197 IDIYSKWGESENALYVFNEMVTGDLIVWNSIIAGFAQNNDGDEALNLFKSMKRNGFPANQ 256

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
           S LTSVLRACTGLALLELG QVHVHV K+D DL+LNNALLDMYCKCGSLEDA  VF+RM+
Sbjct: 257 SALTSVLRACTGLALLELGRQVHVHVFKHDQDLVLNNALLDMYCKCGSLEDANYVFTRMV 316

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393
           +KDVISWSTMI+G AQNGYS+EALKLFESMKVS  KPNYITI+GVLFACSHAG +E GW+
Sbjct: 317 EKDVISWSTMIAGFAQNGYSREALKLFESMKVSGTKPNYITILGVLFACSHAGLLEAGWH 376

Query: 394 HFKSMKKFYG 403
           +F+SMKK +G
Sbjct: 377 YFRSMKKLFG 386


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 273/601 (45%), Positives = 397/601 (66%), Gaps = 7/601 (1%)

Query: 50  CYQRD--LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY  +     +++    M+  G   +  T+A ++K C+   A    K VH  VL   +E 
Sbjct: 116 CYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEM 175

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           + ++   LL+++ KF    +   +F++MP+ +V+ W+ MIS Y  +  + +A+EL   M 
Sbjct: 176 DLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMR 235

Query: 168 REGVRPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           R  V PN FT+++VL++C S   L + +Q+HC ++KVG + +VFV +AL+D+YAK G L 
Sbjct: 236 RAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLD 295

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
           N+  +F E+P R+ V WN++I G+ Q+ D D+AL+LYK M      A + T +SVLRAC 
Sbjct: 296 NSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACA 355

Query: 285 GLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            LA +ELGTQ+H   LK  YD D+++ NAL+DMY KCGS+++A  VF  + ++D ISW+ 
Sbjct: 356 SLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNA 415

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           MISG + +G   EALK F+ M+ +   PN +T V +L ACS+AG ++ G N+FKSM + Y
Sbjct: 416 MISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDY 475

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           GI+P  EHY+CM+ LLGR+G L +AVKLI E+P EP+   WRALLGAC +H + DL I +
Sbjct: 476 GIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMS 535

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A++IL +DPQD  T++LLSNIYA +++W+ VA VRK M+ +G+ KEPG SWIE    +H 
Sbjct: 536 AQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHY 595

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F+V D+SHP +  I+  L+ L  K    GY PD N VL+D+E ++K+  +  HSE+LA+ 
Sbjct: 596 FSVGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALA 655

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           FGL+       IRI KNLRIC DCH+  KL +K+  + I+IRD  R+HHFQDG CSCGDY
Sbjct: 656 FGLIRTPSRGHIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDY 715

Query: 643 W 643
           W
Sbjct: 716 W 716



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/423 (28%), Positives = 226/423 (53%), Gaps = 9/423 (2%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN+ S +     +     L   +     +   G   +   +  ++K  ++    E A  +
Sbjct: 4   RNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSL 63

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H  +   G E   F+   L++ +     +  A+  FD +  +++VSWT M++ Y +    
Sbjct: 64  HACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRF 123

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSAL 213
             +L+L   M   G  PN FT++ VL+AC   ++  + + +H  ++K  +E D++V   L
Sbjct: 124 QDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGL 183

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           +D+Y K G+  +   VF EMP  D++ W+ +I  +AQ++   EA+ L+ +M+RA    +Q
Sbjct: 184 LDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQ 243

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
            T  SVL++C  +  L+LG QVH HVLK   D ++ ++NAL+D+Y KCG L+++M +F  
Sbjct: 244 FTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFME 303

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           +  ++ ++W+TMI G  Q+G   +AL L+++M   +++ + +T   VL AC+    +E G
Sbjct: 304 LPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELG 363

Query: 392 WN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
              H  S+K  Y  D      + +ID+  + G ++ A +L+ +M  E D ++W A++   
Sbjct: 364 TQIHSLSLKTIY--DKDVVVGNALIDMYAKCGSIKNA-RLVFDMLSERDEISWNAMISGY 420

Query: 451 KVH 453
            +H
Sbjct: 421 SMH 423



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 181/344 (52%), Gaps = 9/344 (2%)

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR---ACDSLIIL 191
           MP+RN VS+ T+I  Y  +   D+ ++L   + REG   N F ++ +L+   + +   + 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
             LH  I K+G ES+ FV +ALID YA  G + +A   F+ +  +D+V W  ++  +A+N
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILN 309
               ++L L+  M+  GF  +  T   VL+AC GL    +G  VH  VLK  Y+ DL + 
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
             LLD+Y K G   D + VF  M + DVI WS MIS  AQ+  S+EA++LF  M+ + + 
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240

Query: 370 PNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
           PN  T   VL +C+    ++ G   H   +K   G+D      + ++D+  + G+L  ++
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQVHCHVLK--VGLDGNVFVSNALMDVYAKCGRLDNSM 298

Query: 429 KLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           KL  E+P   + VTW  ++       + D A+   K +L    Q
Sbjct: 299 KLFMELP-NRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQ 341



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 179/371 (48%), Gaps = 47/371 (12%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           +R+        A++    M+   V  +  T+A +++ C +   ++  K VH HVL  G +
Sbjct: 216 SRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLD 275

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
              F+ N L++++ K   L+ +  LF ++P RN V+W TMI  Y  +   DKAL L   M
Sbjct: 276 GNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNM 335

Query: 167 LREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
           L   V+ +  TYS+VLRAC SL  +    Q+H   +K  ++ DV V +ALID+YAK G +
Sbjct: 336 LECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSI 395

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           +NA  VF+ +  RD + WN++I G++ +  V EAL  ++ M+      ++ T  S+L AC
Sbjct: 396 KNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSAC 455

Query: 284 TGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS---- 339
           +   LL++G                                  + F  M+Q   I     
Sbjct: 456 SNAGLLDIGQ---------------------------------NYFKSMVQDYGIEPCME 482

Query: 340 -WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
            ++ M+  L ++G+  +A+KL E +    ++PN      +L AC     V+ G     S 
Sbjct: 483 HYTCMVWLLGRSGHLDKAVKLIEEIP---LEPNVKVWRALLGACVIHNDVDLG---IMSA 536

Query: 399 KKFYGIDPGRE 409
           ++   IDP  E
Sbjct: 537 QQILQIDPQDE 547


>gi|218198170|gb|EEC80597.1| hypothetical protein OsI_22944 [Oryza sativa Indica Group]
          Length = 563

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 299/638 (46%), Positives = 387/638 (60%), Gaps = 94/638 (14%)

Query: 12  TKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVR 71
           + P+ ++R+  L   P  A           LL  F+R C +  L  A+  +  +   G+ 
Sbjct: 14  SAPAGRSRRCLLHSDPHTAH---------PLLVAFSRLCARGPLRDALALLPDLAAAGLT 64

Query: 72  ADSVTYAELIKCCLARHAVEEAKLVHNHVLSGG--FEPET---FLVNILLNMHVKFSLLE 126
           AD V  + LIK C+      + +L+H HV  GG    P     F+ N L++++ KF LL+
Sbjct: 65  ADPVAVSRLIKLCVRHGTPSDGRLIHRHVFGGGDVAAPSCSSLFVSNSLVSLYAKFGLLD 124

Query: 127 EAQVLFDQMPERNVVSWTTMISAYCDAK-MNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
           +A  LFD MP +NVVSWTT+++A  +A+   + AL L + MLR+GV PNM+T+S++L AC
Sbjct: 125 DALRLFDGMPHKNVVSWTTVVAALANARGRKEDALRLFVAMLRDGVAPNMYTFSSILGAC 184

Query: 186 DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
            +  +L  +H  I+KVG             I A+ G  R     + +             
Sbjct: 185 STPRVLAAMHGSIVKVG-------------IRAERGWCRGDRAFYEDE------------ 219

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD 305
           GG+                          TLTSVLRACTGL  LE+G QVH HVLKYD D
Sbjct: 220 GGWV--------------------LVQPGTLTSVLRACTGLVTLEVGRQVHAHVLKYDKD 259

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           LIL+NALLDMYCKCGSL+DA ++F RM Q+DVISWSTMISGLAQNG S EALK+F+ MK 
Sbjct: 260 LILHNALLDMYCKCGSLQDADALFGRMPQRDVISWSTMISGLAQNGRSIEALKVFDMMKS 319

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
              +PN+IT+VGVLFACSHAG VEDGW +F SM+K +GI P REH +CM+DLLGRAGKL 
Sbjct: 320 EGPRPNHITMVGVLFACSHAGLVEDGWYYFSSMEKLFGIQPEREHCNCMVDLLGRAGKLD 379

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           +AVK IHEM ++PD+V WR LLGAC++H+N DLA  AAK+IL L+P D            
Sbjct: 380 DAVKFIHEMNFQPDSVIWRTLLGACRMHKNADLAAYAAKEILRLEPDDQDA--------- 430

Query: 486 NSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQ 545
             + W       K MR RG+ K+PG SWIE                 ++ I + L  L  
Sbjct: 431 -EKSW-------KMMRDRGVKKDPGRSWIE-----------------LESIIQELSRLFS 465

Query: 546 KLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGD 605
           ++  +GY P T +VLQDL  EQKED ++YHSEKLAI FG M+  +GK IRI KNLRICGD
Sbjct: 466 RVTNLGYTPQTEFVLQDLATEQKEDLLKYHSEKLAIAFGTMNAMEGKPIRIMKNLRICGD 525

Query: 606 CHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           CH FAKL +K E + I+IRDP+R+HHFQDG CSC DYW
Sbjct: 526 CHAFAKLVSKSEGKVIIIRDPVRFHHFQDGVCSCNDYW 563


>gi|115468046|ref|NP_001057622.1| Os06g0472300 [Oryza sativa Japonica Group]
 gi|113595662|dbj|BAF19536.1| Os06g0472300, partial [Oryza sativa Japonica Group]
          Length = 397

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 252/397 (63%), Positives = 306/397 (77%)

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL 306
           GFAQ+ D   A+ L+ RMK AGF ++Q TLTSVLRACTGL  LE+G QVH HVLKYD DL
Sbjct: 1   GFAQSGDGVGAIELFMRMKEAGFLSNQGTLTSVLRACTGLVTLEVGRQVHAHVLKYDKDL 60

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
           IL+NALLDMYCKCGSL+DA ++F RM Q+DVISWSTMISGLAQNG S EALK+F+ MK  
Sbjct: 61  ILHNALLDMYCKCGSLQDADALFGRMPQRDVISWSTMISGLAQNGRSIEALKVFDMMKSE 120

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
             +PN+IT+VGVLFACSHAG VEDGW +F SM+K +GI P REH +CM+DLLGRAGKL +
Sbjct: 121 GPRPNHITMVGVLFACSHAGLVEDGWYYFSSMEKLFGIQPEREHCNCMVDLLGRAGKLDD 180

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           AVK IHEM ++PD+V WR LLGAC++H+N DLA  AAK+IL L+P D G  ILLSN YA+
Sbjct: 181 AVKFIHEMNFQPDSVIWRTLLGACRMHKNADLAAYAAKEILRLEPDDQGARILLSNTYAD 240

Query: 487 SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
            ++W +  +  K MR RG+ K+PG SWIE+ KQ+H F   D SHP  + I + L  L  +
Sbjct: 241 LRQWADAEKSWKMMRDRGVKKDPGRSWIELGKQVHVFIAGDLSHPCSESIIQELSRLFSR 300

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           +  +GY P T +VLQDL  EQKED ++YHSEKLAI FG M+  +GK IRI KNLRICGDC
Sbjct: 301 VTNLGYTPQTEFVLQDLATEQKEDLLKYHSEKLAIAFGTMNAMEGKPIRIMKNLRICGDC 360

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           H FAKL +K E + I+IRDP+R+HHFQDG CSC DYW
Sbjct: 361 HAFAKLVSKSEGKVIIIRDPVRFHHFQDGVCSCNDYW 397



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 117/220 (53%), Gaps = 11/220 (5%)

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALID 215
           A+EL + M   G   N  T ++VLRAC  L+ L   RQ+H  ++K  ++ D+ + +AL+D
Sbjct: 11  AIELFMRMKEAGFLSNQGTLTSVLRACTGLVTLEVGRQVHAHVLK--YDKDLILHNALLD 68

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           +Y K G L++A+ +F  MP RD++ W+++I G AQN    EAL ++  MK  G   +  T
Sbjct: 69  MYCKCGSLQDADALFGRMPQRDVISWSTMISGLAQNGRSIEALKVFDMMKSEGPRPNHIT 128

Query: 276 LTSVLRACTGLALLELGTQVHVHVLKY---DHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           +  VL AC+   L+E G      + K      +    N ++D+  + G L+DA+     M
Sbjct: 129 MVGVLFACSHAGLVEDGWYYFSSMEKLFGIQPEREHCNCMVDLLGRAGKLDDAVKFIHEM 188

Query: 333 -IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
             Q D + W T++   A   +    L  + + ++ R++P+
Sbjct: 189 NFQPDSVIWRTLLG--ACRMHKNADLAAYAAKEILRLEPD 226



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 23/231 (9%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           F    D   A++    M+  G  ++  T   +++ C     +E  + VH HVL   ++ +
Sbjct: 2   FAQSGDGVGAIELFMRMKEAGFLSNQGTLTSVLRACTGLVTLEVGRQVHAHVLK--YDKD 59

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             L N LL+M+ K   L++A  LF +MP+R+V+SW+TMIS       + +AL++   M  
Sbjct: 60  LILHNALLDMYCKCGSLQDADALFGRMPQRDVISWSTMISGLAQNGRSIEALKVFDMMKS 119

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIK------------VGFESDVFVRSALIDI 216
           EG RPN  T   VL AC         H G+++             G + +    + ++D+
Sbjct: 120 EGPRPNHITMVGVLFACS--------HAGLVEDGWYYFSSMEKLFGIQPEREHCNCMVDL 171

Query: 217 YAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
             + G+L +A    +EM  + D V+W +++G    + + D A    K + R
Sbjct: 172 LGRAGKLDDAVKFIHEMNFQPDSVIWRTLLGACRMHKNADLAAYAAKEILR 222


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 263/576 (45%), Positives = 383/576 (66%), Gaps = 6/576 (1%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           +S  YA  ++ C+ +      K +H  +L  G   + F  NILLNM+VK   L +A  LF
Sbjct: 37  NSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLF 96

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLI 189
           D+MPERN +S+ T+I  Y ++    +A+EL + + RE V PN FT+++VL+AC   + L 
Sbjct: 97  DEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHRE-VLPNQFTFASVLQACATMEGLN 155

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           +  Q+HC +IK+G  SDVFV +AL+D+YAK G + N+  +F E P R+ V WN++I G  
Sbjct: 156 LGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHV 215

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           Q  D ++AL L+  M      A + T +S LRAC  LA LE G Q+H   +K  +D D++
Sbjct: 216 QLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIV 275

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + NAL+DMY KCGS++DA  VF  M ++D +SW+ MISG + +G  +EAL++F+ M+ + 
Sbjct: 276 VTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETE 335

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           +KP+ +T VGVL AC++AG ++ G  +F SM + +GI+P  EHY+CM+ LLGR G L +A
Sbjct: 336 VKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKA 395

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487
           VKLI E+P++P  + WRALLGAC +H + +L   +A+++L ++PQD  T++LLSN+YA +
Sbjct: 396 VKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATA 455

Query: 488 QKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL 547
           ++WD VA VRK M+ +G+ KEPG SWIE    +H+F V D+SHP++  IN  L+ L  K 
Sbjct: 456 KRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKT 515

Query: 548 VGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCH 607
              GY P+ N VL D+E E+KE  +  HSE+LA+ FG++    G  IRI KNLRIC DCH
Sbjct: 516 KKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCH 575

Query: 608 TFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
              K  +K+  + IV+RD  R+HHFQ+G CSCGDYW
Sbjct: 576 AAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 128/240 (53%), Gaps = 4/240 (1%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V  +  T+A +++ C     +     +H HV+  G   + F+ N L++++ K   +E + 
Sbjct: 134 VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSM 193

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            LF + P RN V+W T+I  +      +KAL L + ML   V+    TYS+ LRAC SL 
Sbjct: 194 ELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLA 253

Query: 190 ILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            L    Q+H   +K  F+ D+ V +ALID+YAK G +++A  VF+ M  +D V WN++I 
Sbjct: 254 ALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMIS 313

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL 306
           G++ +    EAL ++ +M+      D+ T   VL AC    LL+ G Q +   +  DH +
Sbjct: 314 GYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQG-QAYFTSMIQDHGI 372



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 107/207 (51%), Gaps = 5/207 (2%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D  +A++    M  + V+A  VTY+  ++ C +  A+E    +H+  +   F+ +  + N
Sbjct: 219 DGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTN 278

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L++M+ K   +++A+++FD M +++ VSW  MIS Y    +  +AL +   M    V+P
Sbjct: 279 ALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKP 338

Query: 174 NMFTYSAVLRACDSLIILRQLHCGIIKV----GFESDVFVRSALIDIYAKLGELRNAECV 229
           +  T+  VL AC +  +L Q       +    G E  +   + ++ +  + G L  A  +
Sbjct: 339 DKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKL 398

Query: 230 FNEMPTR-DLVVWNSIIGGFAQNSDVD 255
            +E+P +  ++VW +++G    ++D++
Sbjct: 399 IDEIPFQPSVMVWRALLGACVIHNDIE 425


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 258/612 (42%), Positives = 391/612 (63%), Gaps = 6/612 (0%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN  S       F     +  A    + M   G+  + VT+  ++  C +  A++  + +
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
            +H++  G+  +  +   LL+M+ K   L++A  +F+++ ++NVV+W  MI+AY   +  
Sbjct: 436 QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQY 495

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSAL 213
           D AL     +L+EG++PN  T++++L  C   DSL + + +H  I+K G ESD+ V +AL
Sbjct: 496 DNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNAL 555

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           + ++   G+L +A+ +FN+MP RDLV WN+II GF Q+     A + +K M+ +G   D+
Sbjct: 556 VSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDK 615

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
            T T +L AC     L  G ++H  + +  +D D+++   L+ MY KCGS+EDA  VF +
Sbjct: 616 ITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHK 675

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           + +K+V SW++MI+G AQ+G  +EAL+LF  M+   +KP++IT VG L AC+HAG +E+G
Sbjct: 676 LPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEG 735

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
            +HF+SMK+F  I+P  EHY CM+DL GRAG L EAV+ I +M  EPD+  W ALLGAC+
Sbjct: 736 LHHFQSMKEF-NIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQ 794

Query: 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGC 511
           VH N +LA  AA+K L LDP D G +++LSNIYA +  W EVA++RK M  RG+ K+PG 
Sbjct: 795 VHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQ 854

Query: 512 SWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDS 571
           SWIEV+ ++H F   D +HPQ ++I+  L+ L  ++  +GY PDT YVL D+E  +KE +
Sbjct: 855 SWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQA 914

Query: 572 IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHH 631
           + YHSE+LAI +GL+       I I KNLR+CGDCHT  K  +K+  + I+ RD  R+HH
Sbjct: 915 LFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHH 974

Query: 632 FQDGNCSCGDYW 643
           F+DG CSCGD+W
Sbjct: 975 FKDGVCSCGDFW 986



 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 133/440 (30%), Positives = 247/440 (56%), Gaps = 16/440 (3%)

Query: 36  TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL 95
           T+ ++++L+   R         AM+ +  +    ++    TY+ L++ C+    + + + 
Sbjct: 75  TQKANAVLN---RLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGER 131

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           ++NH+   G +P+ F+ N L+NM+ K      A+ +FD M E++V SW  ++  Y    +
Sbjct: 132 IYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGL 191

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSA 212
            ++A +L   M+++ V+P+  T+ ++L AC     +   R+L+  I+K G+++D+FV +A
Sbjct: 192 YEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTA 251

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           LI+++ K G++ +A  VF+ +PTRDLV W S+I G A++    +A NL++RM+  G   D
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPD 311

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFS 330
           +    S+LRAC     LE G +VH  +  + +D ++ +  A+L MY KCGS+EDA+ VF 
Sbjct: 312 KVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFD 371

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            +  ++V+SW+ MI+G AQ+G   EA   F  M  S I+PN +T + +L ACS    ++ 
Sbjct: 372 LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKR 431

Query: 391 G---WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           G    +H   ++  YG D      + ++ +  + G L++A ++  ++  + + V W A++
Sbjct: 432 GQQIQDHI--IEAGYGSDD--RVRTALLSMYAKCGSLKDAHRVFEKISKQ-NVVAWNAMI 486

Query: 448 GACKVHRNTDLAICAAKKIL 467
            A   H   D A+   + +L
Sbjct: 487 TAYVQHEQYDNALATFQALL 506



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/426 (30%), Positives = 229/426 (53%), Gaps = 7/426 (1%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEE 92
           N  TR+  +     T         +A      M+  GV+ D V +  L++ C    A+E+
Sbjct: 271 NLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQ 330

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
            K VH  +   G++ E ++   +L+M+ K   +E+A  +FD +  RNVVSWT MI+ +  
Sbjct: 331 GKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQ 390

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFV 209
               D+A      M+  G+ PN  T+ ++L AC S   L+   Q+   II+ G+ SD  V
Sbjct: 391 HGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRV 450

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
           R+AL+ +YAK G L++A  VF ++  +++V WN++I  + Q+   D AL  ++ + + G 
Sbjct: 451 RTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGI 510

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMS 327
             + ST TS+L  C     LELG  VH  ++K   + DL ++NAL+ M+  CG L  A +
Sbjct: 511 KPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKN 570

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           +F+ M ++D++SW+T+I+G  Q+G +Q A   F+ M+ S IKP+ IT  G+L AC+    
Sbjct: 571 LFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEA 630

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           + +G     ++      D      + +I +  + G +++A ++ H++P + +  +W +++
Sbjct: 631 LTEG-RRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMI 688

Query: 448 GACKVH 453
                H
Sbjct: 689 AGYAQH 694


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 258/612 (42%), Positives = 391/612 (63%), Gaps = 6/612 (0%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN  S       F     +  A    + M   G+  + VT+  ++  C +  A++  + +
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
            +H++  G+  +  +   LL+M+ K   L++A  +F+++ ++NVV+W  MI+AY   +  
Sbjct: 436 QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQY 495

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSAL 213
           D AL     +L+EG++PN  T++++L  C   DSL + + +H  I+K G ESD+ V +AL
Sbjct: 496 DNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNAL 555

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           + ++   G+L +A+ +FN+MP RDLV WN+II GF Q+     A + +K M+ +G   D+
Sbjct: 556 VSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDK 615

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
            T T +L AC     L  G ++H  + +  +D D+++   L+ MY KCGS+EDA  VF +
Sbjct: 616 ITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHK 675

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           + +K+V SW++MI+G AQ+G  +EAL+LF  M+   +KP++IT VG L AC+HAG +E+G
Sbjct: 676 LPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEG 735

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
            +HF+SMK+F  I+P  EHY CM+DL GRAG L EAV+ I +M  EPD+  W ALLGAC+
Sbjct: 736 LHHFQSMKEF-NIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQ 794

Query: 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGC 511
           VH N +LA  AA+K L LDP D G +++LSNIYA +  W EVA++RK M  RG+ K+PG 
Sbjct: 795 VHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQ 854

Query: 512 SWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDS 571
           SWIEV+ ++H F   D +HPQ ++I+  L+ L  ++  +GY PDT YVL D+E  +KE +
Sbjct: 855 SWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQA 914

Query: 572 IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHH 631
           + YHSE+LAI +GL+       I I KNLR+CGDCHT  K  +K+  + I+ RD  R+HH
Sbjct: 915 LFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHH 974

Query: 632 FQDGNCSCGDYW 643
           F+DG CSCGD+W
Sbjct: 975 FKDGVCSCGDFW 986



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 133/440 (30%), Positives = 247/440 (56%), Gaps = 16/440 (3%)

Query: 36  TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL 95
           T+ ++++L+   R         AM+ +  +    ++    TY+ L++ C+    + + + 
Sbjct: 75  TQKANAVLN---RLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGER 131

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           ++NH+   G +P+ F+ N L+NM+ K      A+ +FD M E++V SW  ++  Y    +
Sbjct: 132 IYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGL 191

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSA 212
            ++A +L   M+++ V+P+  T+ ++L AC     +   R+L+  I+K G+++D+FV +A
Sbjct: 192 YEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTA 251

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           LI+++ K G++ +A  VF+ +PTRDLV W S+I G A++    +A NL++RM+  G   D
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPD 311

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFS 330
           +    S+LRAC     LE G +VH  +  + +D ++ +  A+L MY KCGS+EDA+ VF 
Sbjct: 312 KVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFD 371

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            +  ++V+SW+ MI+G AQ+G   EA   F  M  S I+PN +T + +L ACS    ++ 
Sbjct: 372 LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKR 431

Query: 391 G---WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           G    +H   ++  YG D      + ++ +  + G L++A ++  ++  + + V W A++
Sbjct: 432 GQQIQDHI--IEAGYGSDDRVR--TALLSMYAKCGSLKDAHRVFEKISKQ-NVVAWNAMI 486

Query: 448 GACKVHRNTDLAICAAKKIL 467
            A   H   D A+   + +L
Sbjct: 487 TAYVQHEQYDNALATFQALL 506



 Score =  229 bits (583), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 130/426 (30%), Positives = 229/426 (53%), Gaps = 7/426 (1%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEE 92
           N  TR+  +     T         +A      M+  GV+ D V +  L++ C    A+E+
Sbjct: 271 NLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQ 330

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
            K VH  +   G++ E ++   +L+M+ K   +E+A  +FD +  RNVVSWT MI+ +  
Sbjct: 331 GKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQ 390

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFV 209
               D+A      M+  G+ PN  T+ ++L AC S   L+   Q+   II+ G+ SD  V
Sbjct: 391 HGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRV 450

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
           R+AL+ +YAK G L++A  VF ++  +++V WN++I  + Q+   D AL  ++ + + G 
Sbjct: 451 RTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGI 510

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMS 327
             + ST TS+L  C     LELG  VH  ++K   + DL ++NAL+ M+  CG L  A +
Sbjct: 511 KPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKN 570

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           +F+ M ++D++SW+T+I+G  Q+G +Q A   F+ M+ S IKP+ IT  G+L AC+    
Sbjct: 571 LFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEA 630

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           + +G     ++      D      + +I +  + G +++A ++ H++P + +  +W +++
Sbjct: 631 LTEG-RRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMI 688

Query: 448 GACKVH 453
                H
Sbjct: 689 TGYAQH 694



 Score = 40.0 bits (92), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 89/197 (45%), Gaps = 5/197 (2%)

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
           KD    + +++ L++ G   EA+++ E +  S I+    T   +L  C     + DG   
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR 454
           +  +KK  G+ P    ++ +I++  + G    A ++  +M  E D  +W  LLG    H 
Sbjct: 133 YNHIKK-SGVQPDIFMWNTLINMYAKCGNTISAKQIFDDM-REKDVYSWNLLLGGYVQHG 190

Query: 455 NTDLAICAAKKIL--NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCS 512
             + A    ++++  ++ P D  T++ + N  A+++  D+  E+   +   G   +    
Sbjct: 191 LYEEAFKLHEQMVQDSVKP-DKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVG 249

Query: 513 WIEVNKQIHAFNVADSS 529
              +N  I   ++ D++
Sbjct: 250 TALINMHIKCGDIGDAT 266


>gi|215713517|dbj|BAG94654.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222635568|gb|EEE65700.1| hypothetical protein OsJ_21333 [Oryza sativa Japonica Group]
          Length = 382

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 245/381 (64%), Positives = 296/381 (77%)

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSL 322
           RMK AGF ++Q TLTSVLRACTGL  LE+G QVH HVLKYD DLIL+NALLDMYCKCGSL
Sbjct: 2   RMKEAGFLSNQGTLTSVLRACTGLVTLEVGRQVHAHVLKYDKDLILHNALLDMYCKCGSL 61

Query: 323 EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
           +DA ++F RM Q+DVISWSTMISGLAQNG S EALK+F+ MK    +PN+IT+VGVLFAC
Sbjct: 62  QDADALFGRMPQRDVISWSTMISGLAQNGRSIEALKVFDMMKSEGPRPNHITMVGVLFAC 121

Query: 383 SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
           SHAG VEDGW +F SM+K +GI P REH +CM+DLLGRAGKL +AVK IHEM ++PD+V 
Sbjct: 122 SHAGLVEDGWYYFSSMEKLFGIQPEREHCNCMVDLLGRAGKLDDAVKFIHEMNFQPDSVI 181

Query: 443 WRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502
           WR LLGAC++H+N DLA  AAK+IL L+P D G  ILLSN YA+ ++W +  +  K MR 
Sbjct: 182 WRTLLGACRMHKNADLAAYAAKEILRLEPDDQGARILLSNTYADLRQWADAEKSWKMMRD 241

Query: 503 RGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQD 562
           RG+ K+PG SWIE+ KQ+H F   D SHP  + I + L  L  ++  +GY P T +VLQD
Sbjct: 242 RGVKKDPGRSWIELGKQVHVFIAGDLSHPCSESIIQELSRLFSRVTNLGYTPQTEFVLQD 301

Query: 563 LEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIV 622
           L  EQKED ++YHSEKLAI FG M+  +GK IRI KNLRICGDCH FAKL +K E + I+
Sbjct: 302 LATEQKEDLLKYHSEKLAIAFGTMNAMEGKPIRIMKNLRICGDCHAFAKLVSKSEGKVII 361

Query: 623 IRDPIRYHHFQDGNCSCGDYW 643
           IRDP+R+HHFQDG CSC DYW
Sbjct: 362 IRDPVRFHHFQDGVCSCNDYW 382



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 112/213 (52%), Gaps = 11/213 (5%)

Query: 166 MLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           M   G   N  T ++VLRAC  L+ L   RQ+H  ++K  ++ D+ + +AL+D+Y K G 
Sbjct: 3   MKEAGFLSNQGTLTSVLRACTGLVTLEVGRQVHAHVLK--YDKDLILHNALLDMYCKCGS 60

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           L++A+ +F  MP RD++ W+++I G AQN    EAL ++  MK  G   +  T+  VL A
Sbjct: 61  LQDADALFGRMPQRDVISWSTMISGLAQNGRSIEALKVFDMMKSEGPRPNHITMVGVLFA 120

Query: 283 CTGLALLELGTQVHVHVLKY---DHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVI 338
           C+   L+E G      + K      +    N ++D+  + G L+DA+     M  Q D +
Sbjct: 121 CSHAGLVEDGWYYFSSMEKLFGIQPEREHCNCMVDLLGRAGKLDDAVKFIHEMNFQPDSV 180

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
            W T++   A   +    L  + + ++ R++P+
Sbjct: 181 IWRTLLG--ACRMHKNADLAAYAAKEILRLEPD 211



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 105/215 (48%), Gaps = 23/215 (10%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  G  ++  T   +++ C     +E  + VH HVL   ++ +  L N LL+M+ K   
Sbjct: 3   MKEAGFLSNQGTLTSVLRACTGLVTLEVGRQVHAHVLK--YDKDLILHNALLDMYCKCGS 60

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L++A  LF +MP+R+V+SW+TMIS       + +AL++   M  EG RPN  T   VL A
Sbjct: 61  LQDADALFGRMPQRDVISWSTMISGLAQNGRSIEALKVFDMMKSEGPRPNHITMVGVLFA 120

Query: 185 CDSLIILRQLHCGIIK------------VGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           C         H G+++             G + +    + ++D+  + G+L +A    +E
Sbjct: 121 CS--------HAGLVEDGWYYFSSMEKLFGIQPEREHCNCMVDLLGRAGKLDDAVKFIHE 172

Query: 233 MPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
           M  + D V+W +++G    + + D A    K + R
Sbjct: 173 MNFQPDSVIWRTLLGACRMHKNADLAAYAAKEILR 207


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 251/591 (42%), Positives = 376/591 (63%), Gaps = 5/591 (0%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A K    M+  G + D VT+  L+        ++  + VH  +   G E E  +   L+ 
Sbjct: 181 AYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVG 240

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   + +AQV+FD++PE+NVV+WT +I+ Y      D ALELL  M +  V PN  T
Sbjct: 241 MYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKIT 300

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           Y+++L+ C + + L   +++H  II+ G+  +++V +ALI +Y K G L+ A  +F ++P
Sbjct: 301 YTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLP 360

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD+V W +++ G+AQ    DEA++L++RM++ G   D+ T TS L +C+  A L+ G  
Sbjct: 361 HRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKS 420

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  ++   Y  D+ L +AL+ MY KCGS++DA  VF++M +++V++W+ MI+G AQ+G 
Sbjct: 421 IHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGR 480

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            +EAL+ FE MK   IKP+ +T   VL AC+H G VE+G  HF+SM   YGI P  EHYS
Sbjct: 481 CREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYS 540

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           C +DLLGRAG L+EA  +I  MP++P    W ALL AC++H + +    AA+ +L LDP 
Sbjct: 541 CFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPD 600

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           D G Y+ LSNIYA + ++++  +VR+ M  R + KEPG SWIEV+ ++H F+V D SHP+
Sbjct: 601 DDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPE 660

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
             +I   L  L +++   GY PDT +VL D++ EQK  ++  HSE+LAI +GLM    G 
Sbjct: 661 AKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPPGT 720

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            IRI KNLR+CGDCHT +K  +K+  + I+ RD  R+HHF DG CSCGD+W
Sbjct: 721 PIRIVKNLRVCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 141/445 (31%), Positives = 249/445 (55%), Gaps = 16/445 (3%)

Query: 21  FSLTITPPVA----SCNTITRNSSSLLD--DFTRFCYQRDLPRAMKAMHAMQCHGVRADS 74
           F LT TP V+      N   R   +L +  D +  C Q  L  A+  ++ M   G R  S
Sbjct: 38  FELT-TPTVSHDQLPGNAGFRKVDTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYS 96

Query: 75  VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ 134
             +  L++ C    ++E+ + VH  +L  G +P  +L N LL+M+ K   L +A+ +FD 
Sbjct: 97  DVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDG 156

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS---LIIL 191
           + +RN+VSWT MI A+     N +A +    M   G +P+  T+ ++L A  +   L + 
Sbjct: 157 IRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVG 216

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           +++H  I K G E +  V ++L+ +YAK G++  A+ +F+++P +++V W  +I G+AQ 
Sbjct: 217 QKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQ 276

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILN 309
             VD AL L ++M++A  A ++ T TS+L+ CT    LE G +VH ++++  Y  ++ + 
Sbjct: 277 GQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVV 336

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
           NAL+ MYCKCG L++A  +F  +  +DV++W+ M++G AQ G+  EA+ LF  M+   IK
Sbjct: 337 NALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIK 396

Query: 370 PNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
           P+ +T    L +CS   F+++G + H + +   Y +D   +  S ++ +  + G + +A 
Sbjct: 397 PDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQ--SALVSMYAKCGSMDDAR 454

Query: 429 KLIHEMPYEPDAVTWRALLGACKVH 453
            + ++M  E + V W A++  C  H
Sbjct: 455 LVFNQMS-ERNVVAWTAMITGCAQH 478



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 174/305 (57%), Gaps = 9/305 (2%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           +  Q  +  A++ +  MQ   V  + +TY  +++ C    A+E  K VH +++  G+  E
Sbjct: 273 YAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGRE 332

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            ++VN L+ M+ K   L+EA+ LF  +P R+VV+WT M++ Y     +D+A++L   M +
Sbjct: 333 IWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQ 392

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           +G++P+  T+++ L +C S   L++   +H  ++  G+  DV+++SAL+ +YAK G + +
Sbjct: 393 QGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDD 452

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VFN+M  R++V W ++I G AQ+    EAL  +++MK+ G   D+ T TSVL ACT 
Sbjct: 453 ARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTH 512

Query: 286 LALLELGTQVHVHVLKYDHDLIL----NNALLDMYCKCGSLEDAMSVFSRM-IQKDVISW 340
           + L+E G + H   +  D+ +       +  +D+  + G LE+A +V   M  Q     W
Sbjct: 513 VGLVEEGRK-HFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVW 571

Query: 341 STMIS 345
             ++S
Sbjct: 572 GALLS 576


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 252/612 (41%), Positives = 389/612 (63%), Gaps = 6/612 (0%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN  S       F     +  A    + M   G+  + VT+  ++  C    A+++ + +
Sbjct: 370 RNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQI 429

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H+ ++  G+  +  +   LL+M+ K   L +A+ +F+++ ++NVV+W  MI+AY   +  
Sbjct: 430 HDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKY 489

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSAL 213
           D A+     +L+EG++P+  T++++L  C   D+L + + +   II+ GFESD+ +R+AL
Sbjct: 490 DNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNAL 549

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           + ++   G+L +A  +FN+MP RDLV WN+II GF Q+ +   A + +K M+ +G   DQ
Sbjct: 550 VSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQ 609

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
            T T +L AC     L  G ++H  + +   D D+++   L+ MY KCGS++DA  VF  
Sbjct: 610 ITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHN 669

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           + +K+V SW++MI+G AQ+G  +EAL+LF  M+   +KP++IT VG L AC+HAG +++G
Sbjct: 670 LPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEG 729

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
            +HF+SMK F  I+P  EHY CM+DL GRAG L EAV+ I++M  +PD+  W ALLGAC+
Sbjct: 730 LHHFESMKDF-NIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQ 788

Query: 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGC 511
           VH + +LA   A+K L LDP D G Y++LSNIYA +  W EV ++RK M  RG+ K+PG 
Sbjct: 789 VHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQ 848

Query: 512 SWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDS 571
           SWIEV+ ++H F   D +HPQI++I+  L  L  ++  +GY PDT YVL D+E  +KE +
Sbjct: 849 SWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHA 908

Query: 572 IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHH 631
           + +HSE+LAI +GL+       I I KNLR+CGDCHT  KL +K+  + I+ RD  R+HH
Sbjct: 909 LCHHSERLAIAYGLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHH 968

Query: 632 FQDGNCSCGDYW 643
           F+DG CSCGD+W
Sbjct: 969 FKDGVCSCGDFW 980



 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 136/456 (29%), Positives = 252/456 (55%), Gaps = 15/456 (3%)

Query: 36  TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL 95
           T+ +++ L+   R      L  AM  + ++    ++    TY+ L++ C+    + + + 
Sbjct: 69  TQRANAFLN---RLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGER 125

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +HNH+     +P+ F+ N+L++M+ K      A+ +FD+MP+++V SW  ++  Y   + 
Sbjct: 126 IHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRR 185

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRAC-DSLIILR--QLHCGIIKVGFESDVFVRSA 212
            ++A  L   M+++GV+P+ +T+  +L AC D+  + +  +L   I+  G+++D+FV +A
Sbjct: 186 YEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTA 245

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           LI+++ K G + +A  VFN +P RDL+ W S+I G A++    +A NL++ M+  G   D
Sbjct: 246 LINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPD 305

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFS 330
           +    S+L+AC     LE G +VH  +  +  D ++ +  ALL MY KCGS+EDA+ VF+
Sbjct: 306 KVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFN 365

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            +  ++V+SW+ MI+G AQ+G  +EA   F  M  S I+PN +T + +L ACS    ++ 
Sbjct: 366 LVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQ 425

Query: 391 GWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           G   H + +K  Y  D      + ++ +  + G L +A + + E   + + V W A++ A
Sbjct: 426 GRQIHDRIIKAGYITDDRVR--TALLSMYAKCGSLMDA-RNVFERISKQNVVAWNAMITA 482

Query: 450 CKVHRNTDLAICAAKKIL--NLDPQDPGTYILLSNI 483
              H   D A+   + +L   + P D  T+  + N+
Sbjct: 483 YVQHEKYDNAVATFQALLKEGIKP-DSSTFTSILNV 517



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 127/412 (30%), Positives = 220/412 (53%), Gaps = 7/412 (1%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           T     R   +A      M+  GV+ D V +  L+K C    A+E+ K VH  +   G +
Sbjct: 279 TGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLD 338

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
            E ++   LL+M+ K   +E+A  +F+ +  RNVVSWT MI+ +      ++A      M
Sbjct: 339 TEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKM 398

Query: 167 LREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
           +  G+ PN  T+ ++L AC     L   RQ+H  IIK G+ +D  VR+AL+ +YAK G L
Sbjct: 399 IESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSL 458

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
            +A  VF  +  +++V WN++I  + Q+   D A+  ++ + + G   D ST TS+L  C
Sbjct: 459 MDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVC 518

Query: 284 TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
                LELG  V   +++  ++ DL + NAL+ M+  CG L  AM++F+ M ++D++SW+
Sbjct: 519 KSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWN 578

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
           T+I+G  Q+G +Q A   F+ M+ S +KP+ IT  G+L AC+    + +G     ++   
Sbjct: 579 TIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEG-RRLHALITE 637

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             +D      + +I +  + G + +A  + H +P + +  +W +++     H
Sbjct: 638 AALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLP-KKNVYSWTSMITGYAQH 688



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 119/418 (28%), Positives = 222/418 (53%), Gaps = 9/418 (2%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           +   R    A +    M   GV+ D  T+  ++  C     V++   + + +L+ G++ +
Sbjct: 180 YVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTD 239

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F+   L+NMH+K   +++A  +F+ +P R++++WT+MI+     +   +A  L   M  
Sbjct: 240 LFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEE 299

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           EGV+P+   + ++L+AC+    L Q   +H  + +VG +++++V +AL+ +Y K G + +
Sbjct: 300 EGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMED 359

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VFN +  R++V W ++I GFAQ+  ++EA   + +M  +G   ++ T  S+L AC+ 
Sbjct: 360 ALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSR 419

Query: 286 LALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
            + L+ G Q+H  ++K  Y  D  +  ALL MY KCGSL DA +VF R+ +++V++W+ M
Sbjct: 420 PSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAM 479

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFY 402
           I+   Q+     A+  F+++    IKP+  T   +L  C     +E G W   +S+    
Sbjct: 480 ITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKW--VQSLIIRA 537

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           G +      + ++ +    G L  A+ L ++MP E D V+W  ++     H     A 
Sbjct: 538 GFESDLHIRNALVSMFVNCGDLMSAMNLFNDMP-ERDLVSWNTIIAGFVQHGENQFAF 594



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 127/271 (46%), Gaps = 7/271 (2%)

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV-- 299
           N+ +   ++   + EA+ +   +        + T +S+L+ C     L  G ++H H+  
Sbjct: 73  NAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKF 132

Query: 300 LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
            K   D+ + N L+ MY KCG+   A  +F  M  KDV SW+ ++ G  Q+   +EA +L
Sbjct: 133 SKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRL 192

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
            E M    +KP+  T V +L AC+ A  V+ G   F S+    G D      + +I++  
Sbjct: 193 HEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELF-SLILNAGWDTDLFVGTALINMHI 251

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           + G + +A+K+ + +P   D +TW +++     HR    A C   +++  +   P     
Sbjct: 252 KCGGVDDALKVFNNLPRR-DLITWTSMITGLARHRQFKQA-CNLFQVMEEEGVQPDKVAF 309

Query: 480 LSNIYA--NSQKWDEVAEVRKTMRARGITKE 508
           +S + A  + +  ++   V   M+  G+  E
Sbjct: 310 VSLLKACNHPEALEQGKRVHARMKEVGLDTE 340


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/582 (42%), Positives = 379/582 (65%), Gaps = 12/582 (2%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           + AD   Y  L+K C     + + ++VH H+L   F  +  + N LLNM+ K   LEEA+
Sbjct: 56  IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF---MLREGVRPNMFTYSAVLRACD 186
            +F++MP+R+ V+WTT+IS Y     +D+  + L+F   MLR G  PN FT S+V++A  
Sbjct: 116 KVFEKMPQRDFVTWTTLISGY---SQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAA 172

Query: 187 SL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
           +        QLH   +K GF+S+V V SAL+D+Y + G + +A+ VF+ + +R+ V WN+
Sbjct: 173 AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNA 232

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD 303
           +I G A+ S  ++AL L++ M R GF     +  S+  AC+    LE G  VH +++K  
Sbjct: 233 LIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSG 292

Query: 304 HDLIL--NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
             L+    N LLDMY K GS+ DA  +F R+ ++DV+SW+++++  AQ+G+ +EA+  FE
Sbjct: 293 EKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFE 352

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            M+   I+PN I+ + VL ACSH+G +++GW++++ MKK  GI P   HY  ++DLLGRA
Sbjct: 353 EMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKK-DGIVPEAWHYVTVVDLLGRA 411

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           G L  A++ I EMP EP A  W+ALL AC++H+NT+L   AA+ +  LDP DPG +++L 
Sbjct: 412 GDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILY 471

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
           NIYA+  +W++ A VRK M+  G+ KEP CSW+E+   IH F   D  HPQ ++I +  +
Sbjct: 472 NIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWE 531

Query: 542 HLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
            ++ K+  +GY PDT++V+  ++ +++E ++QYHSEK+A+ F L++   G TI I+KN+R
Sbjct: 532 EVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIR 591

Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +CGDCHT  KL +K+  + I++RD  R+HHF+DGNCSC DYW
Sbjct: 592 VCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 157/305 (51%), Gaps = 13/305 (4%)

Query: 52  QRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Q D P  A+   + M   G   +  T + +IK   A         +H   +  GF+    
Sbjct: 138 QHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVH 197

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           + + LL+++ ++ L+++AQ++FD +  RN VSW  +I+ +      +KALEL   MLR+G
Sbjct: 198 VGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDG 257

Query: 171 VRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
            RP+ F+Y+++  AC S   L Q   +H  +IK G +   F  + L+D+YAK G + +A 
Sbjct: 258 FRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDAR 317

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            +F+ +  RD+V WNS++  +AQ+    EA+  ++ M+R G   ++ +  SVL AC+   
Sbjct: 318 KIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSG 377

Query: 288 LLELGTQVHVHVLKYDHDLILNNA-----LLDMYCKCGSLEDAMSVFSRM-IQKDVISWS 341
           LL+ G   +  + K   D I+  A     ++D+  + G L  A+     M I+     W 
Sbjct: 378 LLDEGWHYYELMKK---DGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWK 434

Query: 342 TMISG 346
            +++ 
Sbjct: 435 ALLNA 439



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 126/287 (43%), Gaps = 42/287 (14%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++    M   G R    +YA L   C +   +E+ K VH +++  G +   F  N LL
Sbjct: 245 KALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLL 304

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   + +A+ +FD++ +R+VVSW ++++AY       +A+     M R G+RPN  
Sbjct: 305 DMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEI 364

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           ++ +VL AC         H G++  G+                          + E+  +
Sbjct: 365 SFLSVLTACS--------HSGLLDEGWH-------------------------YYELMKK 391

Query: 237 DLVV---WN--SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           D +V   W+  +++    +  D++ AL   + M     AA      ++L AC      EL
Sbjct: 392 DGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAA---IWKALLNACRMHKNTEL 448

Query: 292 GTQVHVHVLKYDHDLILNNALL-DMYCKCGSLEDAMSVFSRMIQKDV 337
           G     HV + D D    + +L ++Y   G   DA  V  +M +  V
Sbjct: 449 GAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGV 495


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/601 (41%), Positives = 387/601 (64%), Gaps = 7/601 (1%)

Query: 50  CYQRD--LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY  +     ++K    M+  G + ++ T+A ++K C+        K VH       +  
Sbjct: 220 CYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLE 279

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           E F+   L+++++K   +++A  +F++MP+ +V+ W+ MI+ Y  ++ +++A+E+   M 
Sbjct: 280 ELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMR 339

Query: 168 REGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           R  V PN FT +++L+AC SL+ L+   Q+HC ++KVG + +VFV +AL+D+YAK G + 
Sbjct: 340 RGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRME 399

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
           N+  +F+E P    V WN++I G+ Q  + ++AL L+K M        + T +SVLRAC 
Sbjct: 400 NSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACA 459

Query: 285 GLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
           G+A LE G+Q+H   +K  YD + ++ NAL+DMY KCG+++DA  VF  + + D +SW+ 
Sbjct: 460 GIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNA 519

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           MISG + +G   EALK FESM  +  KP+ +T VG+L ACS+AG ++ G  +FKSM + Y
Sbjct: 520 MISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEY 579

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            I+P  EHY+CM+ LLGR+G L +A KL+HE+P+EP  + WRALL AC +H + +L   +
Sbjct: 580 DIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRIS 639

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A+++L ++P+D  T++LLSNIYAN+++W  VA +R +M+ +GI KEPG SWIE   ++H 
Sbjct: 640 AQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHY 699

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F+V D+SHP    IN  L+ L  K    GY PD + VL D+E   KE  +  HSE+LA+ 
Sbjct: 700 FSVGDTSHPDTKLINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALA 759

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           +GL+       +RI KNLRIC DCH   KL +K+  + I+IRD  R+HHF +G CSCGDY
Sbjct: 760 YGLIRTPSISPLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDY 819

Query: 643 W 643
           W
Sbjct: 820 W 820



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/423 (30%), Positives = 230/423 (54%), Gaps = 9/423 (2%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN+ S +     +        A+     +Q  G   +   ++ ++K  ++    +    V
Sbjct: 108 RNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSV 167

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H  V   GF+ + F+   L++ +      E A+ +FD +  +++VSWT M++ Y + +  
Sbjct: 168 HACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECF 227

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSAL 213
           +++L+L   M   G +PN FT+++VL+AC  L +    + +H    K  +  ++FV   L
Sbjct: 228 EESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVEL 287

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           ID+Y K G++ +A  VF EMP  D++ W+ +I  +AQ+   +EA+ ++ RM+R     +Q
Sbjct: 288 IDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQ 347

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
            TL S+L+AC  L  L+LG Q+H HV+K   D ++ ++NAL+DMY KCG +E+++ +FS 
Sbjct: 348 FTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSE 407

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
                 +SW+T+I G  Q G  ++AL LF+ M   +++   +T   VL AC+    +E G
Sbjct: 408 SPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPG 467

Query: 392 WN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
              H  S+K  Y  D      + +ID+  + G +++A +L+ +M  E D V+W A++   
Sbjct: 468 SQIHSLSVKTIY--DKNTVVGNALIDMYAKCGNIKDA-RLVFDMLREHDQVSWNAMISGY 524

Query: 451 KVH 453
            VH
Sbjct: 525 SVH 527



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/416 (31%), Positives = 216/416 (51%), Gaps = 9/416 (2%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           ++  Y  L++ C+        K +H  ++  G   + F  NILLN +VK+  L +A  LF
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLF 102

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192
           D+MP+RN VS+ T+I  Y       +A+ L   +  EG   N F +S VL+   S    +
Sbjct: 103 DEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAK 162

Query: 193 ---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
               +H  + K+GF+SD FV +ALID Y+  G    A  VF+ +  +D+V W  ++  + 
Sbjct: 163 LGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYV 222

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           +N   +E+L L+ RM+  GF  +  T  SVL+AC GL +  +G  VH    K  Y  +L 
Sbjct: 223 ENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELF 282

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           +   L+D+Y K G ++DA+ VF  M + DVI WS MI+  AQ+  S+EA+++F  M+   
Sbjct: 283 VGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGL 342

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           + PN  T+  +L AC+    ++ G N         G+D      + ++D+  + G+++ +
Sbjct: 343 VLPNQFTLASLLQACASLVDLQLG-NQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENS 401

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           ++L  E P   D V+W  ++       N + A+   K +L    Q  GT +  S++
Sbjct: 402 LQLFSESPNCTD-VSWNTVIVGYVQAGNGEKALILFKDMLECQVQ--GTEVTYSSV 454



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 132/263 (50%), Gaps = 4/263 (1%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
            R+        A++    M+   V  +  T A L++ C +   ++    +H HV+  G +
Sbjct: 320 ARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLD 379

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
              F+ N L++M+ K   +E +  LF + P    VSW T+I  Y  A   +KAL L   M
Sbjct: 380 MNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDM 439

Query: 167 LREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
           L   V+    TYS+VLRAC  +  L    Q+H   +K  ++ +  V +ALID+YAK G +
Sbjct: 440 LECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNI 499

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           ++A  VF+ +   D V WN++I G++ +    EAL  ++ M       D+ T   +L AC
Sbjct: 500 KDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSAC 559

Query: 284 TGLALLELGTQVHVHVLKYDHDL 306
           +   LL+ G Q +   +  ++D+
Sbjct: 560 SNAGLLDRG-QAYFKSMVEEYDI 581


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 261/591 (44%), Positives = 370/591 (62%), Gaps = 5/591 (0%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           AM+    M   GV+ ++ TY  ++K C +  A++  K VH  +  GG E +  +   LL 
Sbjct: 113 AMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLR 172

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   + EA+ +FD +   +++SWT MI AY  +    +A  L++ M +EG +PN  T
Sbjct: 173 MYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAIT 232

Query: 178 YSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           Y ++L AC S   L  ++++H   +  G E DV V +AL+ +YAK G + +A  VF+ M 
Sbjct: 233 YVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMK 292

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD+V WN +IG FA++    EA +L+ +M+  G   D     S+L AC     LE   +
Sbjct: 293 VRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKK 352

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H H L    + D+ +  AL+ MY K GS++DA  VF RM  ++V+SW+ MISGLAQ+G 
Sbjct: 353 IHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGL 412

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            Q+AL++F  M    +KP+ +T V VL ACSHAG V++G + + +M + YGI+P   H +
Sbjct: 413 GQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCN 472

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           CM+DLLGRAG+L EA   I  M  +PD  TW ALLG+C+ + N +L    AK+ L LDP+
Sbjct: 473 CMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPK 532

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           +  TY+LLSNIYA + KWD V+ VR  MR RGI KEPG SWIEV+ +IH F VADSSHP+
Sbjct: 533 NAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPE 592

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
             +IN+    +I+K+   GY PDT  VL++   + KE  I  HSEKLAIV+GLM    G 
Sbjct: 593 CKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKLAIVYGLMHTPPGN 652

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            IR+ KNLR+C DCH   KL +K+E + I++RD  R+HHF+DG CSCGDYW
Sbjct: 653 PIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/394 (32%), Positives = 214/394 (54%), Gaps = 15/394 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+  DS  Y E++K CL +  +  AK VH+ ++    E    ++N LL+++++   L+EA
Sbjct: 23  GLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEA 82

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +FD + +++  SW  MI+ Y + K  + A+ L   M  EGV+PN  TY  +L+AC SL
Sbjct: 83  RCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASL 142

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             L   +++H  I   G ESDV V +AL+ +Y K G +  A  +F+ +   D++ W  +I
Sbjct: 143 SALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMI 202

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YD 303
           G +AQ+ +  EA  L  +M++ GF  +  T  S+L AC     L+   +VH H L    +
Sbjct: 203 GAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLE 262

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D+ +  AL+ MY K GS++DA  VF RM  +DV+SW+ MI   A++G   EA  LF  M
Sbjct: 263 LDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQM 322

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE----HYSCMIDLLG 419
           +    KP+ I  + +L AC+ AG +E  W   K + + + +D G E      + ++ +  
Sbjct: 323 QTEGCKPDAIMFLSILNACASAGALE--W--VKKIHR-HALDSGLEVDVRVGTALVHMYS 377

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           ++G + +A  +   M    + V+W A++     H
Sbjct: 378 KSGSIDDARVVFDRMKVR-NVVSWNAMISGLAQH 410



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 139/320 (43%), Gaps = 63/320 (19%)

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYC 317
           L  R++R G   D      VL+ C     L    QVH  ++K   + +  + N LL +Y 
Sbjct: 16  LMNRLQR-GLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYI 74

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           +CG L++A  VF  +++K   SW+ MI+G  ++ ++++A++LF  M    ++PN  T + 
Sbjct: 75  ECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMI 134

Query: 378 VLFACS----------------HAGFVED---GWNHFKSMKKFYGIDPGRE--------- 409
           +L AC+                H G   D   G    +   K   I+  R          
Sbjct: 135 ILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHD 194

Query: 410 --HYSCMIDLLGRAGKLQEAVKLIHEMP---YEPDAVTWRALLGAC----------KVHR 454
              ++ MI    ++G  +EA +L+ +M    ++P+A+T+ ++L AC          +VHR
Sbjct: 195 IISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHR 254

Query: 455 NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWI 514
           +      A    L LD +  GT ++   +YA S   D+   V   M+ R +      SW 
Sbjct: 255 H------ALDAGLELDVR-VGTALV--QMYAKSGSIDDARVVFDRMKVRDVV-----SW- 299

Query: 515 EVNKQIHAFNVADSSHPQID 534
             N  I AF      H   D
Sbjct: 300 --NVMIGAFAEHGRGHEAYD 317


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 248/614 (40%), Positives = 379/614 (61%), Gaps = 6/614 (0%)

Query: 35  ITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAK 94
           +  N +S  +  + FC      +  + +  +   G   +  T+  ++K C ++  + E K
Sbjct: 152 MIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGK 211

Query: 95  LVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK 154
            +H  V+  G  P++ L N L+N++ K      A  +F ++PER+VVSWT +I+ +  A+
Sbjct: 212 AIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFV-AE 270

Query: 155 MNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRS 211
                L +   ML EG  PNM+T+ ++LR+C SL    + +Q+H  I+K   + + FV +
Sbjct: 271 GYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGT 330

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
           AL+D+YAK   L +AE +FN +  RDL  W  I+ G+AQ+   ++A+  + +M+R G   
Sbjct: 331 ALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKP 390

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVF 329
           ++ TL S L  C+ +A L+ G Q+H   +K     D+ + +AL+DMY KCG +EDA  VF
Sbjct: 391 NEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVF 450

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
             ++ +D +SW+T+I G +Q+G   +ALK FE+M      P+ +T +GVL ACSH G +E
Sbjct: 451 DGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIE 510

Query: 390 DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           +G  HF S+ K YGI P  EHY+CM+D+LGRAGK  E    I EM    + + W  +LGA
Sbjct: 511 EGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGA 570

Query: 450 CKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEP 509
           CK+H N +    AA K+  L+P+    YILLSN++A    WD+V  VR  M  RG+ KEP
Sbjct: 571 CKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEP 630

Query: 510 GCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKE 569
           GCSW+EVN Q+H F   D SHP+I +I+  L+ L QKL+ VGY P+T++VL ++   +K+
Sbjct: 631 GCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQ 690

Query: 570 DSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRY 629
           + + YHSE+LA+ F L+S +  KTIRI KNLRICGDCH F K  +++ NQ +V+RD   +
Sbjct: 691 ELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCF 750

Query: 630 HHFQDGNCSCGDYW 643
           HHF++G+CSC ++W
Sbjct: 751 HHFKNGSCSCQNFW 764



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/419 (28%), Positives = 217/419 (51%), Gaps = 8/419 (1%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           L  A++  + M+   +R +   +A LI    +       + +H  V   GFE +  + N 
Sbjct: 71  LQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNA 130

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
            + M++K   +E     F  M   N+ S   ++S +CD +  D+   +LI +L EG  PN
Sbjct: 131 FVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPN 190

Query: 175 MFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
           M+T+ ++L+ C S   L +   +H  +IK G   D  + ++L+++YAK G    A  VF 
Sbjct: 191 MYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFG 250

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           E+P RD+V W ++I GF         L ++ +M   GF  +  T  S+LR+C+ L+ ++L
Sbjct: 251 EIPERDVVSWTALITGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDL 309

Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G QVH  ++K   D +  +  AL+DMY K   LEDA ++F+R+I++D+ +W+ +++G AQ
Sbjct: 310 GKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQ 369

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           +G  ++A+K F  M+   +KPN  T+   L  CS    ++ G     SM    G      
Sbjct: 370 DGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSG-RQLHSMAIKAGQSGDMF 428

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
             S ++D+  + G +++A +++ +     D V+W  ++     H     A+ A + +L+
Sbjct: 429 VASALVDMYAKCGCVEDA-EVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLD 486



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 148/297 (49%), Gaps = 6/297 (2%)

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           V+  G  P++ L + L+N++VK   L+ A+ + ++MP ++V  W   +S+        +A
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDI 216
           ++L   M    +R N F +++++ A  SL        +H  + K GFESD+ + +A + +
Sbjct: 75  VQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTM 134

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           Y K   + N    F  M   +L   N+++ GF      D+   +  ++   GF  +  T 
Sbjct: 135 YMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTF 194

Query: 277 TSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
            S+L+ C     L  G  +H  V+K   + D  L N+L+++Y KCGS   A  VF  + +
Sbjct: 195 ISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPE 254

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           +DV+SW+ +I+G    GY    L++F  M      PN  T + +L +CS    V+ G
Sbjct: 255 RDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLG 310



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 129/261 (49%), Gaps = 6/261 (2%)

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           IL+++   +IK G   D  + S+L+++Y K   L+ A  V  EMP +D+  WN  +    
Sbjct: 7   ILKKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSAN 66

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLI 307
               + EA+ L+  M+      +Q    S++ A   L     G  +H  V KY  + D++
Sbjct: 67  SPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDIL 126

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           ++NA + MY K  S+E+    F  M+ +++ S + ++SG        +  ++   + V  
Sbjct: 127 ISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEG 186

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
            +PN  T + +L  C+  G + +G   H + +K   GI+P    ++ ++++  + G    
Sbjct: 187 FEPNMYTFISILKTCASKGDLNEGKAIHGQVIKS--GINPDSHLWNSLVNVYAKCGSANY 244

Query: 427 AVKLIHEMPYEPDAVTWRALL 447
           A K+  E+P E D V+W AL+
Sbjct: 245 ACKVFGEIP-ERDVVSWTALI 264


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 249/592 (42%), Positives = 379/592 (64%), Gaps = 6/592 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A K    M+  G + D VT+  L+        ++  + VH  ++  G E E  +   L+ 
Sbjct: 132 AFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVG 191

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   + +A+V+FD++PE+NVV+WT +I+ Y      D ALELL  M +  V PN  T
Sbjct: 192 MYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKIT 251

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           ++++L+ C +   L   +++H  II+ G+  +++V ++LI +Y K G L  A  +F+++P
Sbjct: 252 FASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLP 311

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD+V W +++ G+AQ    DEA+NL++RM++ G   D+ T TSVL +C+  A L+ G +
Sbjct: 312 HRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKR 371

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL-AQNG 351
           +H  ++   Y+ D+ L +AL+ MY KCGS++DA  VF++M +++V++W+ +I+G  AQ+G
Sbjct: 372 IHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHG 431

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
             +EAL+ F+ MK   IKP+ +T   VL AC+H G VE+G  HF+SM   YGI P  EHY
Sbjct: 432 RCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHY 491

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           SC +DLLGRAG L+EA  +I  MP+ P    W ALL AC+VH + +    AA+ +L LDP
Sbjct: 492 SCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDP 551

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
            D G Y+ LS+IYA + ++++  +VR+ M  R + KEPG SWIEV+ ++H F+V D SHP
Sbjct: 552 DDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHP 611

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
           + ++I   L  L +++  +GY PDT +VL D++ EQKE  +  HSE+LAI +GLM    G
Sbjct: 612 ESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSERLAITYGLMKTPPG 671

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             IRI KNLR+CGDCHT  K  +K+  + I+ RD  R+HHF DG CSCGD+W
Sbjct: 672 MPIRIVKNLRVCGDCHTATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/412 (32%), Positives = 234/412 (56%), Gaps = 9/412 (2%)

Query: 45  DFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGG 104
           D +  C    L  A+  M+ M   G R  S  +  L++ C    ++E+ + VH  +L  G
Sbjct: 18  DVSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSG 77

Query: 105 FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
            +P  +L N LL+M+ K   L +A+ +FD + +RN+VSWT MI A+     N +A +   
Sbjct: 78  IQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYE 137

Query: 165 FMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
            M   G +P+  T+ ++L A  +  +L   +++H  I++ G E +  V ++L+ +YAK G
Sbjct: 138 TMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCG 197

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
           ++  A  +F+ +P +++V W  +I G+AQ   VD AL L + M++A  A ++ T  S+L+
Sbjct: 198 DISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQ 257

Query: 282 ACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
            CT  A LE G +VH ++++  Y  +L + N+L+ MYCKCG LE+A  +FS +  +DV++
Sbjct: 258 GCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVT 317

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSM 398
           W+ M++G AQ G+  EA+ LF  M+   IKP+ +T   VL +CS   F+++G   H + +
Sbjct: 318 WTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLV 377

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
              Y +D   +  S ++ +  + G + +A  + ++M  E + V W A++  C
Sbjct: 378 HAGYNLDVYLQ--SALVSMYAKCGSMDDASLVFNQMS-ERNVVAWTAIITGC 426



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 169/292 (57%), Gaps = 9/292 (3%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           +  Q  +  A++ +  MQ   V  + +T+A +++ C    A+E  K VH +++  G+  E
Sbjct: 224 YAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRE 283

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            ++VN L+ M+ K   LEEA+ LF  +P R+VV+WT M++ Y     +D+A+ L   M +
Sbjct: 284 LWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQ 343

Query: 169 EGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           +G++P+  T+++VL +C S   L   +++H  ++  G+  DV+++SAL+ +YAK G + +
Sbjct: 344 QGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDD 403

Query: 226 AECVFNEMPTRDLVVWNSIIGG-FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
           A  VFN+M  R++V W +II G  AQ+    EAL  + +MK+ G   D+ T TSVL ACT
Sbjct: 404 ASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACT 463

Query: 285 GLALLELGTQVHVHVLKYDHDLIL----NNALLDMYCKCGSLEDAMSVFSRM 332
            + L+E G + H   +  D+ +       +  +D+  + G LE+A +V   M
Sbjct: 464 HVGLVEEGRK-HFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSM 514


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 255/633 (40%), Positives = 376/633 (59%), Gaps = 41/633 (6%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111
            R L  A +    M   G+  ++VT+  L+  C    A+   + +H+H+   G E +  +
Sbjct: 236 HRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIV 295

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK-----ALELLIFM 166
            N L+ M+ K + ++EA+ +FD+M +R+V+SW+ MI+ Y  +   DK       +LL  M
Sbjct: 296 ANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERM 355

Query: 167 LREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLG-- 221
            REGV PN  T+ ++LRAC +   L   RQ+H  + KVGFE D  +++A+ ++YAK G  
Sbjct: 356 RREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSI 415

Query: 222 -----------------------------ELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
                                        +L +AE VF+EMPTR++V WN +I G+AQN 
Sbjct: 416 YEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNG 475

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNN 310
           D+ +   L   MK  GF  D+ T+ ++L AC  LA LE G  VH   +K   + D ++  
Sbjct: 476 DIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVAT 535

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           +L+ MY KCG + +A +VF +M  +D ++W+ M++G  Q+G   EA+ LF+ M   R+ P
Sbjct: 536 SLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSP 595

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           N IT+  V+ ACS AG V++G   F+ M++ + + P ++HY CM+DLLGRAG+LQEA + 
Sbjct: 596 NEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEF 655

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
           I  MP EPD   W ALLGACK H N  LA  AA  IL L+P     YI LSNIYA + +W
Sbjct: 656 IQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRW 715

Query: 491 DEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGV 550
           D+  +VR+ M  RG+ K+ G S IE++ +IH F   D +HP+ID I+  L+ L +++   
Sbjct: 716 DDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEA 775

Query: 551 GYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFA 610
           GY PD  +VL D++  QKE ++ +HSEKLAI +GL+    G  IRI KNLR+CGDCHT  
Sbjct: 776 GYTPDMRFVLHDVDDVQKEKALCHHSEKLAIAYGLLKTPSGTPIRIMKNLRVCGDCHTAT 835

Query: 611 KLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           K  +K+  + IV RD  R+H+F +G CSCGD+W
Sbjct: 836 KFISKIRKREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 148/469 (31%), Positives = 258/469 (55%), Gaps = 17/469 (3%)

Query: 48  RFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           R C    L  A++ +  ++  G+  +S TY  +I+ C      E+ K+VH  +   G E 
Sbjct: 30  RLCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEI 89

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           + +L N L+N + KF  +  A+ +F +M  R+VV+W++MI+AY       KA +    M 
Sbjct: 90  DIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMT 149

Query: 168 REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
              + PN  T+ ++L+AC++  IL   R++H  +  +G E+DV V +ALI +Y+K GE+ 
Sbjct: 150 DANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEIS 209

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
            A  VF++M  R++V W +II   AQ+  ++EA  LY++M +AG + +  T  S+L +C 
Sbjct: 210 VACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCN 269

Query: 285 GLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
               L  G ++H H+ +   + D+I+ NAL+ MYCKC S+++A  +F RM ++DVISWS 
Sbjct: 270 TPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSA 329

Query: 343 MISGLAQNGYS-----QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           MI+G AQ+GY       E  +L E M+   + PN +T + +L AC+  G +E G      
Sbjct: 330 MIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAE 389

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457
           + K  G +  R   + + ++  + G + EA ++  +M    + V W + L      +  D
Sbjct: 390 LSKV-GFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMA-NKNVVAWTSFLSM--YIKCGD 445

Query: 458 LAICAAKKILNLDP-QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           L+  +A+K+ +  P ++  ++ L+   YA +    +V E+  +M+A G 
Sbjct: 446 LS--SAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGF 492



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 111/235 (47%), Gaps = 21/235 (8%)

Query: 36  TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL 95
           TRN  S       +    D+ +  + + +M+  G + D VT   +++ C A   +E  KL
Sbjct: 458 TRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKL 517

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           VH   +  G E +T +   L+ M+ K   + EA+ +FD+M  R+ V+W  M++ Y     
Sbjct: 518 VHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGD 577

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVR----- 210
             +A++L   ML+E V PN  T +AV+ AC           G+++ G E    ++     
Sbjct: 578 GLEAVDLFKRMLKERVSPNEITLTAVISACS--------RAGLVQEGREIFRMMQEDFKM 629

Query: 211 -------SALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
                    ++D+  + G L+ AE     MP   D+ VW++++G    +++V  A
Sbjct: 630 TPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLA 684


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/584 (41%), Positives = 375/584 (64%), Gaps = 6/584 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           + C  +  +   Y++++  C     +++ + +H H+ S  FE +  L+N +LNM+ K   
Sbjct: 96  INCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGS 155

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           LEEAQ LFD+MP +++VSWT +IS Y  +    +AL L   ML  G +PN FT S++L+A
Sbjct: 156 LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA 215

Query: 185 CD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
                S    RQLH   +K G++ +V V S+L+D+YA+   +R A+ +FN +  +++V W
Sbjct: 216 SGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSW 275

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N++I G A+  + +  + L+ +M R GF     T +SV  AC     LE G  VH HV+K
Sbjct: 276 NALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIK 335

Query: 302 YDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
                I  + N L+DMY K GS++DA  VF R++++D++SW+++ISG AQ+G   EAL+L
Sbjct: 336 SGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQL 395

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           FE M  ++++PN IT + VL ACSH+G +++G  +F+ MKK + I+    H+  ++DLLG
Sbjct: 396 FEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDLLG 454

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           RAG+L EA K I EMP +P A  W ALLG+C++H+N DL + AA++I  LDP D G ++L
Sbjct: 455 RAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVL 514

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LSNIYA++ +  + A+VRK M+  G+ KEP CSW+E+  ++H F   D SHP  ++I + 
Sbjct: 515 LSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRM 574

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
            + +  K+  +GY PDT++VL  +  + +E  +QYHSEKLA+ F ++    G TIRI+KN
Sbjct: 575 WEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKN 634

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +RICGDCH+  K  +++  + I++RD  R+HHF  G CSC DYW
Sbjct: 635 IRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 127/291 (43%), Gaps = 54/291 (18%)

Query: 59  MKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118
           M+    M   G      TY+ +   C +  ++E+ K VH HV+  G +P  ++ N L++M
Sbjct: 292 MRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDM 351

Query: 119 HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTY 178
           + K   +++A+ +F ++ ++++VSW ++IS Y    +  +AL+L   ML+  V+PN  T+
Sbjct: 352 YAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITF 411

Query: 179 SAVLRACDSLIILRQLHCGIIKVG-----------FESDVFVRSALIDIYAKLGELRNAE 227
            +VL AC         H G++  G            E+ V     ++D+  + G L  A 
Sbjct: 412 LSVLTACS--------HSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEAN 463

Query: 228 CVFNEMPTRDL-VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
               EMP +    VW +++G          +  ++K M    +AA+Q             
Sbjct: 464 KFIEEMPIKPTAAVWGALLG----------SCRMHKNMDLGVYAAEQ------------- 500

Query: 287 ALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
            + EL            HD   +  L ++Y   G L DA  V   M +  V
Sbjct: 501 -IFELDP----------HDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGV 540


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/591 (41%), Positives = 372/591 (62%), Gaps = 5/591 (0%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           ++K  HAM   GVR   +TY  ++  C +  A+E+ K +H  ++      +  +   L  
Sbjct: 230 SLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTK 289

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M++K   +++A+ +F+ +P R+V++W TMI    D+   ++A  +   ML+E V P+  T
Sbjct: 290 MYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVT 349

Query: 178 YSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           Y A+L AC     L   +++H   +K G  SDV   +ALI++Y+K G +++A  VF+ MP
Sbjct: 350 YLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP 409

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD+V W +++GG+A    V E+ + +K+M + G  A++ T   VL+AC+    L+ G +
Sbjct: 410 KRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKE 469

Query: 295 VHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  V+K     DL + NAL+ MY KCGS+EDA+ V   M  +DV++W+T+I GLAQNG 
Sbjct: 470 IHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGR 529

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
             EAL+ FE MK   ++PN  T V V+ AC     VE+G   F SM+K YGI P  +HY+
Sbjct: 530 GLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYA 589

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           CM+D+L RAG L EA  +I  MP++P A  W ALL AC+ H N ++   AA++ L L+PQ
Sbjct: 590 CMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQ 649

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           + GTY+ LS IYA +  W +VA++RK M+ RG+ KEPG SWIEV  ++H+F   D SHP+
Sbjct: 650 NAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPR 709

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
            ++I   L+ L +++  +GY PDT +V+ DL+ E KE ++ +HSEKLAI +GL+S     
Sbjct: 710 TEEIYSELEALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPET 769

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            IR+ KNLR+C DCHT  K  +K+  + I+ RD  R+HHF++G CSCGDYW
Sbjct: 770 PIRVSKNLRVCTDCHTATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 131/387 (33%), Positives = 221/387 (57%), Gaps = 9/387 (2%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G + DS  Y +L++ C+    +   K VH H+L  G +P  +++N LL ++V    + EA
Sbjct: 39  GSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEA 98

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + LFD+   ++VVSW  MIS Y    +  +A  L   M +EG+ P+ FT+ ++L AC S 
Sbjct: 99  RRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSP 158

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             L   R++H  +++ G  ++  V +ALI +YAK G +R+A  VF+ M +RD V W ++ 
Sbjct: 159 AALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLT 218

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH- 304
           G +A++    E+L  Y  M + G    + T  +VL AC  LA LE G Q+H  +++ +H 
Sbjct: 219 GAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHH 278

Query: 305 -DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D+ ++ AL  MY KCG+++DA  VF  +  +DVI+W+TMI GL  +G  +EA  +F  M
Sbjct: 279 SDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRM 338

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
               + P+ +T + +L AC+  G +  G   H +++K   G+       + +I++  +AG
Sbjct: 339 LKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKD--GLVSDVRFGNALINMYSKAG 396

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGA 449
            +++A ++   MP + D V+W AL+G 
Sbjct: 397 SMKDARQVFDRMP-KRDVVSWTALVGG 422



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 128/391 (32%), Positives = 212/391 (54%), Gaps = 9/391 (2%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  G+  D  T+  ++  C +  A+   + VH  V+  G      + N L++M+ K   
Sbjct: 136 MQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGS 195

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           + +A+ +FD M  R+ VSWTT+  AY ++    ++L+    ML+EGVRP+  TY  VL A
Sbjct: 196 VRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSA 255

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C SL  L   +Q+H  I++    SDV V +AL  +Y K G +++A  VF  +P RD++ W
Sbjct: 256 CGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAW 315

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N++IGG   +  ++EA  ++ RM +   A D+ T  ++L AC     L  G ++H   +K
Sbjct: 316 NTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVK 375

Query: 302 YD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
                D+   NAL++MY K GS++DA  VF RM ++DV+SW+ ++ G A  G   E+   
Sbjct: 376 DGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFST 435

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLL 418
           F+ M    ++ N IT + VL ACS+   ++ G   H + +K   GI       + ++ + 
Sbjct: 436 FKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKA--GIFADLAVANALMSMY 493

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            + G +++A+++   M    D VTW  L+G 
Sbjct: 494 FKCGSVEDAIRVSEGMSTR-DVVTWNTLIGG 523



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 179/365 (49%), Gaps = 15/365 (4%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           L  A    H M    V  D VTY  ++  C     +   K +H   +  G   +    N 
Sbjct: 328 LEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNA 387

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           L+NM+ K   +++A+ +FD+MP+R+VVSWT ++  Y D     ++      ML++GV  N
Sbjct: 388 LINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEAN 447

Query: 175 MFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
             TY  VL+AC + + L   +++H  ++K G  +D+ V +AL+ +Y K G + +A  V  
Sbjct: 448 KITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSE 507

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
            M TRD+V WN++IGG AQN    EAL  ++ MK      + +T  +V+ AC    L+E 
Sbjct: 508 GMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEE 567

Query: 292 GTQVHVHVLKYDHDLILNN----ALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
           G +     ++ D+ ++        ++D+  + G L +A  V   M  +     W  +++ 
Sbjct: 568 GRR-QFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAA 626

Query: 347 LAQNGYSQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI- 404
              +G  +   +  E  +  +++P N  T V + F  + AG   D     K MK+  G+ 
Sbjct: 627 CRAHGNVEIGEQAAE--QCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKE-RGVK 683

Query: 405 -DPGR 408
            +PGR
Sbjct: 684 KEPGR 688



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 98/194 (50%), Gaps = 6/194 (3%)

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMY 316
           ++ + + + G   D      +L++C     L +G QVH H+L++    ++ + N LL +Y
Sbjct: 30  DVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLY 89

Query: 317 CKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIV 376
             CGS+ +A  +F +   K V+SW+ MISG A  G  QEA  LF  M+   ++P+  T V
Sbjct: 90  VHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFV 149

Query: 377 GVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435
            +L ACS    +  G   H + M+   G+       + +I +  + G +++A ++   M 
Sbjct: 150 SILSACSSPAALNWGREVHVRVMEA--GLANNATVGNALISMYAKCGSVRDARRVFDAMA 207

Query: 436 YEPDAVTWRALLGA 449
              D V+W  L GA
Sbjct: 208 SR-DEVSWTTLTGA 220


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 251/591 (42%), Positives = 379/591 (64%), Gaps = 6/591 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            +  +  + C  +  D   Y  L+K C     ++E KLVH HVL+  F+ +  + N LL 
Sbjct: 58  GLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLF 117

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ +   LE A+ LFD+MP R++VSWT+MI+ Y        AL L   ML +G  PN FT
Sbjct: 118 MYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFT 177

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            S++++ C  +      RQ+H    K G  S+VFV S+L+D+YA+ G L  A  VF+++ 
Sbjct: 178 LSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLG 237

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            ++ V WN++I G+A+  + +EAL L+ RM+R G+   + T +++L +C+ +  LE G  
Sbjct: 238 CKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKW 297

Query: 295 VHVHVLKYDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H H++K    L+  + N LL MY K GS+ DA  VF ++++ DV+S ++M+ G AQ+G 
Sbjct: 298 LHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGL 357

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            +EA + F+ M    I+PN IT + VL ACSHA  +++G ++F  M+K Y I+P   HY+
Sbjct: 358 GKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRK-YNIEPKVSHYA 416

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
            ++DLLGRAG L +A   I EMP EP    W ALLGA K+H+NT++   AA+++  LDP 
Sbjct: 417 TIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPS 476

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
            PGT+ LL+NIYA++ +W++VA+VRK M+  G+ KEP CSW+EV   +H F   D +HPQ
Sbjct: 477 YPGTHTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQ 536

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
            +KI+K  + L QK+  +GY PDT++VL  ++ ++KE ++QYHSEKLA+ F L++   G 
Sbjct: 537 KEKIHKMWEKLNQKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGS 596

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           TIRI KN+R+CGDCH+  K  + +  + I++RD  R+HHF DG CSCGDYW
Sbjct: 597 TIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 256/601 (42%), Positives = 379/601 (63%), Gaps = 7/601 (1%)

Query: 50  CYQRD--LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY  +     +++  + M+  G + ++ T +  +K CL   A    K VH   L G ++ 
Sbjct: 211 CYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDH 270

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           + F+   LL ++ K   + +AQ LF++MP+ +++ W+ MI+ Y  +  + +AL+L + M 
Sbjct: 271 DLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMR 330

Query: 168 REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           +  V PN FT+++VL+AC S + L   +Q+H  ++K G  S+VFV +A++D+YAK GE+ 
Sbjct: 331 QTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIE 390

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
           N+  +F E+P R+ V WN+II G+ Q  D + A+NL+  M        + T +SVLRA  
Sbjct: 391 NSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASA 450

Query: 285 GLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            LA LE G Q+H   +K  Y+ D ++ N+L+DMY KCG + DA   F +M ++D +SW+ 
Sbjct: 451 SLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNA 510

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           MI G + +G S EAL LF+ M+ +  KPN +T VGVL ACS+AG +  G  HF+SM K Y
Sbjct: 511 MICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDY 570

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            I P  EHY+CM+ LLGR G+  EA+KLI E+ Y+P  + WRALLGAC +H+  DL    
Sbjct: 571 DIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVC 630

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A+ +L ++P D  T++LLSN+YA + +WD VA VRK M+ + + KEPG SW+E    +H 
Sbjct: 631 AQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHY 690

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F+V D+SHP I  I   L+ L +K    GY PD N VL D++ ++KE  +  HSE+LA+ 
Sbjct: 691 FSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSERLALA 750

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           +GL+      +IRI KNLRIC DCHT  KL +K+  + IVIRD  R+HHF+ G CSCGDY
Sbjct: 751 YGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCGDY 810

Query: 643 W 643
           W
Sbjct: 811 W 811



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 133/420 (31%), Positives = 226/420 (53%), Gaps = 19/420 (4%)

Query: 34  TITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEA 93
           TI R+S+ L            L    + +H  QC     DS +YA +++  +   A   A
Sbjct: 5   TIVRDSTKL----------SQLLHQCRNIHHQQCLSA-LDSHSYAHMLQQIIRNGADPIA 53

Query: 94  -KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
            K +H H+L  G   + F  NILLN +V+ + L++A  LFD+MP+ N +S+ T+   Y  
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFV 209
                +AL  ++ + +EG   N F ++ +L+   S+ +      LH  + K+G  +D FV
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFV 173

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
            +ALID Y+  G +  A  VF+++  +D+V W  ++  +A+N   +E+L L+ +M+  G+
Sbjct: 174 GTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGY 233

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMS 327
             +  T++  L++C GL    +G  VH   LK  YDHDL +  ALL++Y K G + DA  
Sbjct: 234 KPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQR 293

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           +F  M + D+I WS MI+  AQ+  S+EAL LF  M+ + + PN  T   VL AC+ +  
Sbjct: 294 LFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVS 353

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           ++ G      + KF G++      + ++D+  + G+++ ++KL  E+P   D VTW  ++
Sbjct: 354 LDLGKQIHSCVLKF-GLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRND-VTWNTII 411


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/584 (41%), Positives = 376/584 (64%), Gaps = 7/584 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           + C  +  +   Y++++  C     +++ + +H H+ S  FE +  L+N +LNM+ K   
Sbjct: 96  INCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGS 155

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           LEEAQ LFD+MP +++VSWT +IS Y  +    +AL L   ML  G +PN FT S++L+A
Sbjct: 156 LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA 215

Query: 185 CD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
                S    RQLH   +K G++ +V V S+L+D+YA+   +R A+ +FN +  +++V W
Sbjct: 216 SGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSW 275

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N++I G A+  + +  + L+ +M R GF     T +SVL AC     LE G  VH HV+K
Sbjct: 276 NALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIK 334

Query: 302 YDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
                I  + N L+DMY K GS++DA  VF R++++D++SW+++ISG AQ+G   EAL+L
Sbjct: 335 SGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQL 394

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           FE M  ++++PN IT + VL ACSH+G +++G  +F+ MKK + I+    H+  ++DLLG
Sbjct: 395 FEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDLLG 453

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           RAG+L EA K I EMP +P A  W ALLGAC++H+N DL + AA++I  LDP D G ++L
Sbjct: 454 RAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVL 513

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LSNIYA++ +  + A+VRK M+  G+ KEP CSW+E+  ++H F   D SHP  ++I + 
Sbjct: 514 LSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRM 573

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
            + +  K+  +GY PDT++VL  +  + +E  +QYHSEKLA+ F ++    G TIRI+KN
Sbjct: 574 WEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKN 633

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +RICGDCH+  K  +++  + I++RD  R+HHF  G CSC DYW
Sbjct: 634 IRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 251/600 (41%), Positives = 392/600 (65%), Gaps = 13/600 (2%)

Query: 56  PRAMKAMHAMQC---HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
           P +   +H +       +  D   Y +L+K C     +++ KLVH H+++  F  +  + 
Sbjct: 70  PNSTTGLHVLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIK 129

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD---AKMNDKALELLIFMLRE 169
           N +L M+ K   LE A+ +FD+M  ++VV+WT+MI+ Y     A     AL L + M+R+
Sbjct: 130 NSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRD 189

Query: 170 GVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           G+RPN F  S++++ C    S +  +Q+H    K GF+ +VFV S+L+D+YA+ GELR +
Sbjct: 190 GLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRES 249

Query: 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
             VF+E+ +++ V WN++I GFA+  + +EAL L+ +M+R GF A + T +++L + +  
Sbjct: 250 RLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTT 309

Query: 287 ALLELGTQVHVHVLKYDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
             LE G  +H H++K    L+  + N LL MY K G++ DA  VF R+++ DV+S ++M+
Sbjct: 310 GSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSML 369

Query: 345 SGLAQNGYSQEALKLFESMKV-SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
            G AQ+G  +EA++LFE M +   I+PN IT + VL ACSHAG +++G  +F+ MKK YG
Sbjct: 370 IGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKK-YG 428

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           ++P   HY+ ++DL GRAG L +A   I EMP EP+A  W ALLGA K+H+NT++   AA
Sbjct: 429 LEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAA 488

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
           +K+L LDP  PG + LLSNIYA++ +W +VA+VRK M+  G+ KEP CSW+E+   +H F
Sbjct: 489 QKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIF 548

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
           +  D SHPQ +K+ +  ++L QK+  +GY PDT++V   ++ ++KE ++QYHSEKLA+ F
Sbjct: 549 SANDISHPQKNKVYEMWENLNQKIKEIGYVPDTSHVHVFVDQQEKELNLQYHSEKLALAF 608

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            L++   G  IRI KN+R+CGDCH+  K  + +  + I++RD  R+HHF+DG+CSC DYW
Sbjct: 609 ALLNTKPGSVIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/579 (41%), Positives = 369/579 (63%), Gaps = 6/579 (1%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           +  D   Y  L+K C     + + ++VH H++   F  +  + N LLNM+ K   LEEA+
Sbjct: 47  IPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEAR 106

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL- 188
            +FD+MPER+ V+WTT+IS Y        AL L   MLR G  PN FT S+V++A  +  
Sbjct: 107 KVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAER 166

Query: 189 --IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
                 QLH   +K GF+S+V V SAL+D+Y + G + +A+ VF+ + +R+ V WN++I 
Sbjct: 167 RGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIA 226

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL 306
           G A+    ++AL L++ M R GF     +  S+  AC+    LE G  VH +++K    L
Sbjct: 227 GHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKL 286

Query: 307 IL--NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           +    N LLDMY K GS+ DA  +F R+ ++DV+SW+++++  AQ+G+  EA+  FE M+
Sbjct: 287 VAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMR 346

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
              I+PN I+ + VL ACSH+G +++GW++++ MKK  GI     HY  ++DLLGRAG L
Sbjct: 347 RGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKK-DGIVLEAWHYVTIVDLLGRAGDL 405

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484
             A++ I EMP EP A  W+ALL AC++H+NT+L   AA+ +  LDP DPG +++L NIY
Sbjct: 406 NRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIY 465

Query: 485 ANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLI 544
           A+  +W++ A VRK M+  G+ KEP CSW+E+   IH F   D  HPQ ++I +  + ++
Sbjct: 466 ASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVL 525

Query: 545 QKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICG 604
            K+  +GY PDT++V+  ++ +++E ++QYHSEK+A+ F L++   G TI I+KN+R+CG
Sbjct: 526 AKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCG 585

Query: 605 DCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           DCH+  KL +K   + I++RD  R+HHF+DG CSC DYW
Sbjct: 586 DCHSAIKLASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 157/304 (51%), Gaps = 11/304 (3%)

Query: 52  QRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Q D P  A+   + M   G   +  T + +IK   A         +H   +  GF+    
Sbjct: 129 QHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVH 188

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           + + LL+++ ++ L+++AQ++FD +  RN VSW  +I+ +      +KALEL   MLREG
Sbjct: 189 VGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREG 248

Query: 171 VRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
            RP+ F+Y+++  AC S   L Q   +H  +IK G +   F  + L+D+YAK G + +A 
Sbjct: 249 FRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDAR 308

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            +F+ +  RD+V WNS++  +AQ+   +EA+  ++ M+R G   ++ +  SVL AC+   
Sbjct: 309 KIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSG 368

Query: 288 LLELGTQVHVHVLKYDHDLILNN----ALLDMYCKCGSLEDAMSVFSRM-IQKDVISWST 342
           LL+ G   H + L     ++L       ++D+  + G L  A+     M I+     W  
Sbjct: 369 LLDEGW--HYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKA 426

Query: 343 MISG 346
           +++ 
Sbjct: 427 LLNA 430



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 127/287 (44%), Gaps = 42/287 (14%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++    M   G R    +YA L   C +   +E+ K VH +++  G +   F  N LL
Sbjct: 236 KALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLL 295

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   + +A+ +FD++ +R+VVSW ++++AY      ++A+     M R G+RPN  
Sbjct: 296 DMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEI 355

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           ++ +VL AC         H G++  G+                          + E+  +
Sbjct: 356 SFLSVLTACS--------HSGLLDEGWH-------------------------YYELMKK 382

Query: 237 DLVV---WN--SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           D +V   W+  +I+    +  D++ AL   + M     AA      ++L AC      EL
Sbjct: 383 DGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAA---IWKALLNACRMHKNTEL 439

Query: 292 GTQVHVHVLKYDHDLILNNALL-DMYCKCGSLEDAMSVFSRMIQKDV 337
           G     HV + D D    + +L ++Y   G   DA  V  +M +  V
Sbjct: 440 GAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGV 486


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/591 (41%), Positives = 373/591 (63%), Gaps = 5/591 (0%)

Query: 58   AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            A +  H MQ  G+  + +TY  L+  C+   A+   + +H+ V+  GF  +  + N L++
Sbjct: 430  ASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALIS 489

Query: 118  MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            M+ +   +++A++LF++M  ++++SWT MI     + +  +AL +   M + G++PN  T
Sbjct: 490  MYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVT 549

Query: 178  YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            Y+++L AC S   L   R++H  +I+ G  +D  V + L+++Y+  G +++A  VF+ M 
Sbjct: 550  YTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMT 609

Query: 235  TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             RD+V +N++IGG+A ++   EAL L+ R++  G   D+ T  ++L AC     LE   +
Sbjct: 610  QRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKE 669

Query: 295  VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
            +H  VLK  Y  D  L NAL+  Y KCGS  DA+ VF +M++++VISW+ +I G AQ+G 
Sbjct: 670  IHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGR 729

Query: 353  SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
             Q+ L+LFE MK+  IKP+ +T V +L ACSHAG +E+G  +F SM + +GI P  EHY 
Sbjct: 730  GQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYG 789

Query: 413  CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
            CM+DLLGRAG+L E   LI  MP++ +   W ALLGAC++H N  +A  AA+  L LDP 
Sbjct: 790  CMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPD 849

Query: 473  DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
            +   Y+ LS++YA +  WD  A++RK M  RG+TKEPG SWIEV  ++H F   D SHP+
Sbjct: 850  NAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPE 909

Query: 533  IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
             +KI   L  L   +   GY PDT  V+ D++  +KE+++ +HSE+LAI +GL+S   G 
Sbjct: 910  SEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTLPGT 969

Query: 593  TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             IRI KNLR+C DCHT  K   K+ ++ IV RD  R+HHF+DG CSCGDYW
Sbjct: 970  PIRIFKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKDGVCSCGDYW 1020



 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 242/449 (53%), Gaps = 10/449 (2%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           +  A+K +  MQ HG+     T   L+  C +  A+E  + +H   +      +  + N 
Sbjct: 225 IEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANC 284

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           +LNM+ K   + EA+ +FD+M  ++VVSWT +I  Y D   ++ A E+   M +EGV PN
Sbjct: 285 ILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPN 344

Query: 175 MFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
             TY  VL A      L+    +H  I+  G ESD+ V +AL+ +YAK G  ++   VF 
Sbjct: 345 RITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFE 404

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           ++  RDL+ WN++IGG A+  + +EA  +Y +M+R G   ++ T   +L AC     L  
Sbjct: 405 KLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHW 464

Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G ++H  V+K  +  D+ + NAL+ MY +CGS++DA  +F++M++KD+ISW+ MI GLA+
Sbjct: 465 GREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAK 524

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           +G   EAL +F+ M+ + +KPN +T   +L ACS    ++ G    + + +  G+     
Sbjct: 525 SGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIE-AGLATDAH 583

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL-- 467
             + ++++    G +++A ++   M  + D V + A++G    H     A+    ++   
Sbjct: 584 VANTLVNMYSMCGSVKDARQVFDRMT-QRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEE 642

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEV 496
            L P D  TYI + N  ANS   +   E+
Sbjct: 643 GLKP-DKVTYINMLNACANSGSLEWAKEI 670



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/401 (31%), Positives = 220/401 (54%), Gaps = 11/401 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           RAM  +  +Q  G R +S  Y +++K C+    +   + VH H++      + + VN L+
Sbjct: 124 RAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALI 183

Query: 117 NMHVKFSLLEEAQVLFDQM--PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           NM+++   +EEA+ +++++   ER V SW  M+  Y      ++AL+LL  M + G+   
Sbjct: 184 NMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALG 243

Query: 175 MFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
             T   +L +C S   L   R++H   +K     DV V + ++++YAK G +  A  VF+
Sbjct: 244 RATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFD 303

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           +M T+ +V W  IIGG+A     + A  ++++M++ G   ++ T  +VL A +G A L+ 
Sbjct: 304 KMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKW 363

Query: 292 GTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G  VH H+L   H  DL +  AL+ MY KCGS +D   VF +++ +D+I+W+TMI GLA+
Sbjct: 364 GKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 423

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGR 408
            G  +EA +++  M+   + PN IT V +L AC +   +  G   H + +K  +  D   
Sbjct: 424 GGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISV 483

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           +  + +I +  R G +++A  L ++M    D ++W A++G 
Sbjct: 484 Q--NALISMYARCGSIKDARLLFNKM-VRKDIISWTAMIGG 521



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 171/334 (51%), Gaps = 40/334 (11%)

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSAL 213
           D+A++++ ++ ++G R N   Y  +L+ C     L+  R++H  II+     D +  +AL
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNAL 182

Query: 214 IDIYAKLGELRNAECVFNEM--PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
           I++Y + G +  A  V+N++    R +  WN+++ G+ Q   ++EAL L + M++ G A 
Sbjct: 183 INMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLAL 242

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVF 329
            ++T   +L +C   + LE G ++HV  +K     D+ + N +L+MY KCGS+ +A  VF
Sbjct: 243 GRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVF 302

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS------ 383
            +M  K V+SW+ +I G A  G+S+ A ++F+ M+   + PN IT + VL A S      
Sbjct: 303 DKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALK 362

Query: 384 ----------HAGFVED------------GWNHFKSMKKFYGIDPGRE--HYSCMIDLLG 419
                     +AG   D                +K  ++ +     R+   ++ MI  L 
Sbjct: 363 WGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLA 422

Query: 420 RAGKLQEAVKLIHEMPYE---PDAVTWRALLGAC 450
             G  +EA ++ H+M  E   P+ +T+  LL AC
Sbjct: 423 EGGNWEEASEIYHQMQREGMMPNKITYVILLNAC 456


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 258/585 (44%), Positives = 378/585 (64%), Gaps = 6/585 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  G R ++ T +  +K C    A +  K VH   L   ++ + ++   LL ++ K   
Sbjct: 196 MRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGE 255

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR-PNMFTYSAVLR 183
           + EAQ  F++MP+ +++ W+ MIS Y  +  + +ALEL   M +  V  PN FT+++VL+
Sbjct: 256 IAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQ 315

Query: 184 ACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           AC SL++L    Q+H  ++KVG +S+VFV +AL+D+YAK GE+ N+  +F     ++ V 
Sbjct: 316 ACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVA 375

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           WN+II G+ Q  D ++ALNL+  M        + T +SVLRA   L  LE G Q+H   +
Sbjct: 376 WNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTI 435

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K  Y+ D ++ N+L+DMY KCG ++DA   F +M ++D +SW+ +I G + +G   EAL 
Sbjct: 436 KTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALN 495

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
           LF+ M+ S  KPN +T VGVL ACS+AG ++ G  HFKSM + YGI+P  EHY+CM+ LL
Sbjct: 496 LFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLL 555

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
           GR+G+  EAVKLI E+P++P  + WRALLGAC +H+N DL    A+++L ++PQD  T++
Sbjct: 556 GRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHV 615

Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
           LLSN+YA +++WD VA VRK M+ + + KEPG SW+E    +H F V D+SHP I  I  
Sbjct: 616 LLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFA 675

Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRK 598
            L+ L +K    GY PD + VL D+E ++KE  +  HSE+LA+ FGL+ +  G +IRI K
Sbjct: 676 MLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPSGCSIRIIK 735

Query: 599 NLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           NLRIC DCH   KL +K+  + IVIRD  R+HHF+ G CSCGDYW
Sbjct: 736 NLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/392 (31%), Positives = 217/392 (55%), Gaps = 10/392 (2%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G   +   +  L+K  ++    +    VH +V   G + + F+   L++ +     ++ A
Sbjct: 99  GYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAA 158

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +FD +  +++VSWT M++ Y +   ++ +L L   M   G RPN FT SA L++C+ L
Sbjct: 159 RQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGL 218

Query: 189 ---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
               + + +H   +KV ++ D++V  AL+++Y K GE+  A+  F EMP  DL+ W+ +I
Sbjct: 219 EAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMI 278

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQS-TLTSVLRACTGLALLELGTQVHVHVLK--Y 302
             +AQ+    EAL L+ RM+++      + T  SVL+AC  L LL LG Q+H  VLK   
Sbjct: 279 SRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGL 338

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           D ++ ++NAL+D+Y KCG +E+++ +F+   +K+ ++W+T+I G  Q G  ++AL LF +
Sbjct: 339 DSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSN 398

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRA 421
           M    I+P  +T   VL A +    +E G   H  ++K  Y  D    +   +ID+  + 
Sbjct: 399 MLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVAN--SLIDMYAKC 456

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           G++ +A +L  +   + D V+W AL+    +H
Sbjct: 457 GRIDDA-RLTFDKMDKQDEVSWNALICGYSIH 487



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 128/406 (31%), Positives = 214/406 (52%), Gaps = 8/406 (1%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           DS +YA +++  +        K +H H+L  G   + F  NILLN +V F  LE+A  LF
Sbjct: 2   DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192
           D+MP  N VS+ T+   +  +    +A  LL+ + REG   N F ++ +L+   S+ +  
Sbjct: 62  DEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLAD 121

Query: 193 ---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
               +H  + K+G ++D FV +ALID Y+  G +  A  VF+ +  +D+V W  ++  +A
Sbjct: 122 TCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYA 181

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           +N   +++L L+ +M+  G+  +  T+++ L++C GL   ++G  VH   LK  YD DL 
Sbjct: 182 ENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLY 241

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           +  ALL++Y K G + +A   F  M + D+I WS MIS  AQ+  S+EAL+LF  M+ S 
Sbjct: 242 VGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSS 301

Query: 368 -IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
            + PN  T   VL AC+    +  G N   S     G+D      + ++D+  + G+++ 
Sbjct: 302 VVVPNNFTFASVLQACASLVLLNLG-NQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIEN 360

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           +VKL      E + V W  ++       + + A+     +L LD Q
Sbjct: 361 SVKLF-TGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQ 405



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 102/207 (49%), Gaps = 5/207 (2%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D  +A+     M    ++   VTY+ +++   +  A+E  + +H+  +   +  ++ + N
Sbjct: 388 DGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVAN 447

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L++M+ K   +++A++ FD+M +++ VSW  +I  Y    +  +AL L   M +   +P
Sbjct: 448 SLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKP 507

Query: 174 NMFTYSAVLRACDSLIILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           N  T+  VL AC +  +L +        +   G E  +   + ++ +  + G+   A  +
Sbjct: 508 NKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKL 567

Query: 230 FNEMPTR-DLVVWNSIIGGFAQNSDVD 255
             E+P +  ++VW +++G    + ++D
Sbjct: 568 IGEIPFQPSVMVWRALLGACVIHKNLD 594


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/632 (39%), Positives = 376/632 (59%), Gaps = 41/632 (6%)

Query: 53  RDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
           R L  A +    M   G+  ++VT+  L+  C    A+   + +H+H+   G E +  + 
Sbjct: 259 RKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVA 318

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK-----ALELLIFML 167
           N L+ M+ K + +++A+  FD+M +R+V+SW+ MI+ Y  +   DK       +LL  M 
Sbjct: 319 NALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMR 378

Query: 168 REGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLG--- 221
           REGV PN  T+ ++L+AC    +L   RQ+H  I KVGFESD  +++A+ ++YAK G   
Sbjct: 379 REGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIY 438

Query: 222 ----------------------------ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
                                       +L +AE VF+EM TR++V WN +I G+AQ+ D
Sbjct: 439 EAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGD 498

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNA 311
           + +   L   MK  GF  D+ T+ S+L AC  L+ LE G  VH   +K   + D ++  +
Sbjct: 499 IAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATS 558

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+ MY KCG + +A +VF ++  +D ++W+ M++G  Q+G   EA+ LF+ M   R+ PN
Sbjct: 559 LIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPN 618

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            IT   V+ AC  AG V++G   F+ M++ + + PG++HY CM+DLLGRAG+LQEA + I
Sbjct: 619 EITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFI 678

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
             MP EPD   W ALLGACK H N  LA  AA  IL L+P +   Y+ LSNIYA + +WD
Sbjct: 679 QRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWD 738

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
           +  +VRK M  +G+ K+ G S IE++ +IH F   D +HP+ID I+  L+ L +++   G
Sbjct: 739 DSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAG 798

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           Y PD  +VL D++  QKE ++ +HSEKLAI +GL+    G  IRI KNLR+CGDCHT  K
Sbjct: 799 YTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPPGTPIRIMKNLRVCGDCHTATK 858

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             +K+  + IV RD  R+H+F++G CSCGD+W
Sbjct: 859 FISKIRKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 142/468 (30%), Positives = 246/468 (52%), Gaps = 15/468 (3%)

Query: 48  RFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           R C    L  A++ +  ++  G+  +S TY  +I+ C      E+ K+VH  +   G   
Sbjct: 52  RLCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAI 111

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           + +L N L+N + KF  +   + +F +M  R+VV+W++MI+AY       KA +    M 
Sbjct: 112 DIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMK 171

Query: 168 REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
              + PN  T+ ++L+AC++  +L   R++H  +   G E+DV V +ALI +Y+K GE+ 
Sbjct: 172 DANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEIS 231

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
            A  +F +M  R++V W +II   AQ+  ++EA  LY++M +AG + +  T  S+L +C 
Sbjct: 232 LACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCN 291

Query: 285 GLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
               L  G ++H H+ +   + D+++ NAL+ MYCKC  ++DA   F RM ++DVISWS 
Sbjct: 292 TPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSA 351

Query: 343 MISGLAQNGYS-----QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           MI+G AQ+GY       E  +L E M+   + PN +T + +L ACS  G +E G      
Sbjct: 352 MIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAE 411

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457
           + K  G +  R   + + ++  + G + EA ++  +M    + V W +LL    ++    
Sbjct: 412 ISKV-GFESDRSLQTAIFNMYAKCGSIYEAEQVFSKME-NKNVVAWASLL---TMYIKCG 466

Query: 458 LAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
               A K    +  ++  ++ L+   YA S    +V E+  +M+  G 
Sbjct: 467 DLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGF 514



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 114/235 (48%), Gaps = 21/235 (8%)

Query: 36  TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL 95
           TRN  S       +    D+ +  + + +M+  G + D VT   +++ C A  A+E  KL
Sbjct: 480 TRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKL 539

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           VH   +  G E +T +   L+ M+ K   + EA+ +FD++  R+ V+W  M++ Y    +
Sbjct: 540 VHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGI 599

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFE------SDVFV 209
             +A++L   ML+E V PN  T++AV+ AC           G+++ G E       D  +
Sbjct: 600 GPEAVDLFKRMLKERVPPNEITFTAVISACG--------RAGLVQEGREIFRIMQEDFRM 651

Query: 210 RSA------LIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
           +        ++D+  + G L+ AE     MP   D+ VW++++G    + +V  A
Sbjct: 652 KPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLA 706


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 266/630 (42%), Positives = 382/630 (60%), Gaps = 21/630 (3%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDL-PRAMKAMHAMQCHGVRADSVTYAE 79
           FS    P   +CN+I R            C  ++L   A+     M   G+  D  T+  
Sbjct: 45  FSQIPNPTSYTCNSIIRG-----------CTDKNLHQEALLFYQEMMVQGLIPDRYTFPS 93

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139
           L K C  R++  E K +H H    GF  +T+  N L+NM+     L  A+ +FD+M ++ 
Sbjct: 94  LFKSC--RNS-SEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKT 150

Query: 140 VVSWTTMISAYCDAKMNDKALELLIFMLR-EGVRPNMFTYSAVLRAC---DSLIILRQLH 195
           VVSW TMI  +      ++A+ L   M++ E V+PN  T   VL AC     L +++++H
Sbjct: 151 VVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIH 210

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
             I + GF   V + + L+D+Y K G ++ A  +F++   ++L  WN +I G  ++S+ +
Sbjct: 211 EYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYE 270

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
           EAL L++ M+  G   D+ T+ S+L ACT L  LELG  +H ++ K   D D+ L  AL+
Sbjct: 271 EALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALV 330

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           DMY KCGS+E A+ VF  M +KDV++W+ +I GLA  G ++ AL+ F+ M +  +KP+ I
Sbjct: 331 DMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAI 390

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
           T VGVL ACSHAGFV++G +HF SM   YGI P  EHY  ++D+LGRAG++ EA +LI  
Sbjct: 391 TFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKS 450

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
           MP  PD      LLGAC++H N + A  AAK++L +DP   GTY+LLSNIY +S+KW+E 
Sbjct: 451 MPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEA 510

Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYA 553
              R+ M  RG+ K PGCS IEV+  +H F   DSSH Q  +IN+ L+ +I KL   GY 
Sbjct: 511 KRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYV 570

Query: 554 PDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLT 613
           PD + VL D+  E+KE  +  HSEKLAI FGL+S + G  IR+ KNLRIC DCH+  KL 
Sbjct: 571 PDKSEVLFDMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIRVVKNLRICSDCHSATKLI 630

Query: 614 AKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +K+ N+ I++RD  R+HHF+DG CSC  +W
Sbjct: 631 SKLYNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 203/364 (55%), Gaps = 9/364 (2%)

Query: 90  VEEAKLVHNHVLSGG--FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMI 147
           + + K +H  +L  G  F+P T    +      +   L+ A+++F Q+P     +  ++I
Sbjct: 1   MSQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSII 60

Query: 148 SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDV 207
               D  ++ +AL     M+ +G+ P+ +T+ ++ ++C +    +Q+HC   K+GF SD 
Sbjct: 61  RGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSEGKQIHCHSTKLGFASDT 120

Query: 208 FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR-MKR 266
           + ++ L+++Y+  G L +A  VF++M  + +V W ++IG  AQ    +EA+ L+ R MK 
Sbjct: 121 YAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKS 180

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLED 324
                ++ TL +VL AC     L +  ++H ++ +  +   ++LN  L+D+YCKCG ++ 
Sbjct: 181 ENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQL 240

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           A  +F +  +K++ SW+ MI+G  ++   +EAL LF  M+   IK + +T+  +L AC+H
Sbjct: 241 ARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTH 300

Query: 385 AGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
            G +E G W H    K+   +D      + ++D+  + G ++ A+++ HEMP E D +TW
Sbjct: 301 LGALELGKWLHAYIKKQRIDVDVALG--TALVDMYAKCGSIETAIQVFHEMP-EKDVMTW 357

Query: 444 RALL 447
            AL+
Sbjct: 358 TALI 361


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 257/650 (39%), Positives = 402/650 (61%), Gaps = 15/650 (2%)

Query: 1    MILKAVSKLKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMK 60
            MI K ++ L + +P    +Q   +I+ P +    +     +   D    C  R L    +
Sbjct: 412  MIWK-ITSLIFHRP----KQVLSSISNPFSRQRILLSTFPANSPDLKTLCSNRQLK---E 463

Query: 61   AMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHV 120
            A+  M   G+  +   Y  ++  C+++ A+ E + VH H++   +EP  +L   L+ ++ 
Sbjct: 464  ALLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYN 523

Query: 121  KFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSA 180
            K   L +A+ + D+MPERNVVSWT MIS Y       +AL L + ML  G  PN FT++ 
Sbjct: 524  KCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFAT 583

Query: 181  VLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
            VL +C S     + RQ+H  +IK  FES +FV S+L+D+YAK G++  A  VF+ +P RD
Sbjct: 584  VLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERD 643

Query: 238  LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
            +V   +II G+AQ    +EAL+L++R++R G  ++  T  SVL A +GLA L+ G QVH 
Sbjct: 644  VVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHS 703

Query: 298  HVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
            HVL  K    ++L N+L+DMY KCGSL  +  +F  M ++ VISW+ M+ G +++G  +E
Sbjct: 704  HVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGRE 763

Query: 356  ALKLFESMKV-SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM-KKFYGIDPGREHYSC 413
            A++LF+ MK  +++KP+ +T + VL  CSH G  + G   F  M  +  G +P  EHY C
Sbjct: 764  AVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGC 823

Query: 414  MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
            ++DL GRAG+++EA + I +MP+EP A  W +LLGAC+VH+N  +    A+++L ++ ++
Sbjct: 824  VVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESEN 883

Query: 474  PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQI 533
             G Y++LSN+YA++ +WD+V  VR+ M+ + + KEPG SWIE+++ +H F+ +D SHP+ 
Sbjct: 884  AGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRK 943

Query: 534  DKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT 593
            +++   ++ L  K+   GY P+ + VL D++ EQKE  +Q HSEKLA+ FGL+    G  
Sbjct: 944  EEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTP 1003

Query: 594  IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +RI KNLRIC DCH FAK  +++  + + +RD  R+HH   G CSCGDYW
Sbjct: 1004 VRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/592 (40%), Positives = 369/592 (62%), Gaps = 5/592 (0%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A+     MQ +G++ +S T   ++  C    A+E+ K +H + +  G E +  +VN L+
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLV 263

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           NM+ K   +  A  LF++MP R+V SW  +I  Y     + +AL     M   G++PN  
Sbjct: 264 NMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSI 323

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T  +VL AC  L  L   +Q+H   I+ GFES+  V +AL+++YAK G + +A  +F  M
Sbjct: 324 TMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERM 383

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           P +++V WN+II G++Q+    EAL L+  M+  G   D   + SVL AC     LE G 
Sbjct: 384 PKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGK 443

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+H + ++  ++ ++++   L+D+Y KCG++  A  +F RM ++DV+SW+TMI     +G
Sbjct: 444 QIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHG 503

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           + ++AL LF  M+ +  K ++I    +L ACSHAG V+ G  +F+ MK  YG+ P  EHY
Sbjct: 504 HGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHY 563

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +C++DLLGRAG L EA  +I  M  EPDA  W ALLGAC++H N +L   AAK +  LDP
Sbjct: 564 ACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDP 623

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
            + G Y+LLSNIYA +Q+W++VA++RK M+ +G+ K+PGCS + V++ +  F V D +HP
Sbjct: 624 DNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHP 683

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
           Q ++I   L+ L +++   GY P+TN  LQD+E E KE+ +  HSEKLAI FG+++ + G
Sbjct: 684 QSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPG 743

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             IRI KNLR+C DCH   K  +K+  + I++RD  R+HH ++G CSCGDYW
Sbjct: 744 IPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  271 bits (694), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 162/490 (33%), Positives = 268/490 (54%), Gaps = 34/490 (6%)

Query: 7   SKLKWTKPSSQARQFSLTITPPVASC-------NTITRNSSSLLDDFTRFCYQRD--LPR 57
           S L  +   +Q R+  +  T  V++C        T  RN++ +  + T   Y ++    +
Sbjct: 45  SPLPTSTVVAQLRRNKVKTTREVSACANQTQFTQTDIRNNAVVWKE-TIIGYVKNGFWNK 103

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++  + MQ  G+  D + +  +IK C ++  ++  + VH  +++ GFE +  +   L +
Sbjct: 104 ALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALAS 163

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   LE A+ +FD+MP+R+VVSW  +I+ Y       +AL L   M   G++PN  T
Sbjct: 164 MYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSST 223

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             +V+  C  L+ L   +Q+HC  I+ G ESDV V + L+++YAK G +  A  +F  MP
Sbjct: 224 LVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMP 283

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD+  WN+IIGG++ NS   EAL  + RM+  G   +  T+ SVL AC  L  LE G Q
Sbjct: 284 IRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQ 343

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H + ++  ++ + ++ NAL++MY KCG++  A  +F RM +K+V++W+ +ISG +Q+G+
Sbjct: 344 IHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGH 403

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG--IDPGREH 410
             EAL LF  M+   IKP+   IV VL AC+H   +E G       K+ +G  I  G E 
Sbjct: 404 PHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQG-------KQIHGYTIRSGFES 456

Query: 411 Y----SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
                + ++D+  + G +  A KL   MP E D V+W  ++ A  +H + + A+    K+
Sbjct: 457 NVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDVVSWTTMILAYGIHGHGEDALALFSKM 515

Query: 467 LNLDPQDPGT 476
                Q+ GT
Sbjct: 516 -----QETGT 520


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 257/604 (42%), Positives = 377/604 (62%), Gaps = 14/604 (2%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D   A++A  +M+   ++ +  T+   IK C A   +   +  H   L  GFEP+ F+ +
Sbjct: 132 DSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSS 191

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI-FMLREG-- 170
            L++M+ K   L +A+ LFD++  RN+VSWT+MI+ Y       +AL L   F++ E   
Sbjct: 192 ALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGS 251

Query: 171 -----VRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
                V  +     +VL AC  +    I   +H  +IK GFE D+ V + L+D YAK GE
Sbjct: 252 EGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGE 311

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG-FAADQSTLTSVLR 281
           L  +  VF+ M  RD++ WNSII  +AQN    E++ ++ RM + G    +  TL++VL 
Sbjct: 312 LGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLL 371

Query: 282 ACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
           AC       LG  +H  V+K   + ++ +  +++DMYCKCG +E A   F RM +K+V S
Sbjct: 372 ACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKS 431

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           WS M++G   +G+++EAL++F  M ++ +KPNYIT V VL ACSHAG +E+GW+ FK+M 
Sbjct: 432 WSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMS 491

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
             + ++PG EHY CM+DLLGRAG L+EA  LI  M   PD V W ALLGAC++H+N DL 
Sbjct: 492 HEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLG 551

Query: 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQ 519
             +A+K+  LDP++ G Y+LLSNIYA++ +W++V  +R  M+  G+ K PG S +++  +
Sbjct: 552 EISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGR 611

Query: 520 IHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKL 579
           +H F V D  HPQ +KI ++L+ L  KL  VGY PD   VL D+  E+KE  ++ HSEKL
Sbjct: 612 VHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKL 671

Query: 580 AIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
           A+ FG+M+   G TI I KNLR+CGDCHT  K  +K+ ++ IV+RD  R+HHF+DG CSC
Sbjct: 672 AVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSC 731

Query: 640 GDYW 643
           GDYW
Sbjct: 732 GDYW 735



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 191/345 (55%), Gaps = 17/345 (4%)

Query: 131 LFDQMPER-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
           LF++  ++ NV SW ++I+    +  + +AL     M +  ++PN  T+   +++C +L+
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166

Query: 190 IL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            L   RQ H   +  GFE D+FV SAL+D+Y+K GELR+A  +F+E+  R++V W S+I 
Sbjct: 167 DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 226

Query: 247 GFAQNSDVDEALNLYKR--MKRAGFAADQST------LTSVLRACTGLALLELGTQVHVH 298
           G+ QN D   AL L+K   ++ +G   D         + SVL AC+ ++   +   VH  
Sbjct: 227 GYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGF 286

Query: 299 VLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           ++K  ++ DL + N L+D Y KCG L  +  VF  M ++DVISW+++I+  AQNG S E+
Sbjct: 287 LIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTES 346

Query: 357 LKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           +++F  M K   I  N +T+  VL AC+H+G    G      + K  G++      + +I
Sbjct: 347 MEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKM-GLESNVFVGTSII 405

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           D+  + GK++ A K    M  E +  +W A++    +H +   A+
Sbjct: 406 DMYCKCGKVEMARKAFDRMR-EKNVKSWSAMVAGYGMHGHAKEAL 449



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 124/236 (52%), Gaps = 17/236 (7%)

Query: 225 NAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           N   +FN+   + ++  WNS+I   A++ D  EAL  +  M++     ++ST    +++C
Sbjct: 103 NLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSC 162

Query: 284 TGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
           + L  L  G Q H   L   ++ DL +++AL+DMY KCG L DA ++F  +  ++++SW+
Sbjct: 163 SALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWT 222

Query: 342 TMISGLAQNGYSQEALKLFESMKV--------SRIKPNYITIVGVLFACSHAG--FVEDG 391
           +MI+G  QN  +  AL LF+   V          +  + I +V VL ACS      + +G
Sbjct: 223 SMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEG 282

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
            + F   + F G D G E  + ++D   + G+L  + ++   M  E D ++W +++
Sbjct: 283 VHGFLIKRGFEG-DLGVE--NTLMDAYAKCGELGVSRRVFDGMA-ERDVISWNSII 334


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/592 (41%), Positives = 381/592 (64%), Gaps = 5/592 (0%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           RA++ +  M   G+  +  T +  +K C      E  + +H+ ++      ++FL   L+
Sbjct: 195 RALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLI 254

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K + +++A+++F  MPER++++W  +IS +   + +++A  L   M  EG+  N  
Sbjct: 255 DMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQT 314

Query: 177 TYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T S VL++  +L    + RQ+H   +K GFE D +V ++LID Y K G + +A  VF E 
Sbjct: 315 TLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEES 374

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           P  DLV++ S++  +AQ+   +EAL LY  M+  G   D    +S+L AC  L+  E G 
Sbjct: 375 PIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGK 434

Query: 294 QVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           QVHVH+LK+    D+   N+L++MY KCGS+EDA   FSR+  + ++SWS MI GLAQ+G
Sbjct: 435 QVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHG 494

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           Y +EAL+LF+ M    + PN+IT+V VL AC+HAG V +  ++F SMK  +GI+P +EHY
Sbjct: 495 YGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHY 554

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +CMIDLLGRAGKL+ A++L+++MP++ +A+ W ALLGA ++H+N DL   AA+ +L L+P
Sbjct: 555 ACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEP 614

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
           +  GT++LL+NIYA+   WD+VA VR+ M+   + KEPG SW+EV  +++ F V D SH 
Sbjct: 615 EKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHS 674

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
           +  +I   L  L   L   GY P     L D+E  +KE  + +HSEKLA+ FGL++   G
Sbjct: 675 RSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVAFGLIATPPG 734

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             IR++KNLRIC DCHT  K  +K+ ++ I++RD  R+HHF++G+CSCG+YW
Sbjct: 735 APIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 135/392 (34%), Positives = 219/392 (55%), Gaps = 11/392 (2%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   G++ +   +  ++K C     +   K VH  V+  GF+ + F+ N L+ ++ K   
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
             +A+ LFD +P+R+VVSW  + S Y  + M+ +A+ L   M+  G+RPN F+ S+++  
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 185 CDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C  L   +  R++H  +IK+G++SD F  +AL+D+YAK+G L +A  VF+E+   D+V W
Sbjct: 121 CTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSW 180

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N+II G   +     AL L + M ++G   +  TL+S L+AC G+AL ELG Q+H  ++K
Sbjct: 181 NAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIK 240

Query: 302 YD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
            D   D  L   L+DMY KC S++DA  VF  M ++D+I+W+ +ISG +QN   +EA  L
Sbjct: 241 MDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASL 300

Query: 360 FESMKVSRIKPNYITIVGVL--FACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
           F  M    I  N  T+  VL   A   A ++     H  S+K  +  D      + +ID 
Sbjct: 301 FPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQI-HALSLKSGFEFD--NYVVNSLIDT 357

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            G+ G +++A ++  E P   D V + +L+ A
Sbjct: 358 YGKCGHVEDATRVFEESPI-VDLVLFTSLVTA 388



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 131/446 (29%), Positives = 236/446 (52%), Gaps = 9/446 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A+   H M   G+R +  + + +I  C       + + +H +++  G++ + F  N L+
Sbjct: 94  EAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALV 153

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K  +LE+A  +FD++ + ++VSW  +I+     + + +ALELL  M + G+ PNMF
Sbjct: 154 DMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMF 213

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T S+ L+AC  + +    RQLH  +IK+   SD F+   LID+Y+K   + +A  VF  M
Sbjct: 214 TLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLM 273

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           P RD++ WN++I G +QN + +EA +L+  M   G   +Q+TL++VL++   L    +  
Sbjct: 274 PERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCR 333

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+H   LK  ++ D  + N+L+D Y KCG +EDA  VF      D++ ++++++  AQ+G
Sbjct: 334 QIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDG 393

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
             +EAL+L+  M+   IKP+      +L AC+     E G      + KF G        
Sbjct: 394 QGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKF-GFMSDIFAG 452

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           + ++++  + G +++A      +P     V+W A++G    H     A+   K++L +  
Sbjct: 453 NSLVNMYAKCGSIEDASCAFSRIPVR-GIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGV 511

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVR 497
             P  +I L ++         VAE +
Sbjct: 512 --PPNHITLVSVLCACNHAGLVAEAK 535


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/586 (41%), Positives = 377/586 (64%), Gaps = 7/586 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   G+  +   Y  ++  C+++ A+ E + VH H++   +EP  +L   L+ ++ K   
Sbjct: 1   MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L +A+ + D+MPERNVVSWT MIS Y       +AL L + ML  G  PN FT++ VL +
Sbjct: 61  LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120

Query: 185 CDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C S     + RQ+H  +IK  FES +FV S+L+D+YAK G++  A  VF+ +P RD+V  
Sbjct: 121 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC 180

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL- 300
            +II G+AQ    +EAL+L++R++R G  ++  T  SVL A +GLA L+ G QVH HVL 
Sbjct: 181 TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 240

Query: 301 -KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
            K    ++L N+L+DMY KCGSL  +  +F  M ++ VISW+ M+ G +++G  +EA++L
Sbjct: 241 AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVEL 300

Query: 360 FESMKV-SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM-KKFYGIDPGREHYSCMIDL 417
           F+ MK  +++KP+ +T + VL  CSH G  + G   F  M  +  G +P  EHY C++DL
Sbjct: 301 FKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDL 360

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
            GRAG+++EA + I +MP+EP A  W +LLGAC+VH+N  +    A+++L ++ ++ G Y
Sbjct: 361 FGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNY 420

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           ++LSN+YA++ +WD+V  VR+ M+ + + KEPG SWIE+++ +H F+ +D SHP+ +++ 
Sbjct: 421 VILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVF 480

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
             ++ L  K+   GY P+ + VL D++ EQKE  +Q HSEKLA+ FGL+    G  +RI 
Sbjct: 481 AKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRII 540

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLRIC DCH FAK  +++  + + +RD  R+HH   G CSCGDYW
Sbjct: 541 KNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 135/313 (43%), Gaps = 43/313 (13%)

Query: 29  VASCNTITRNSSSL-LDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLAR 87
           V SC  I    + L LD+            A+     +Q  G+R++ VTYA ++      
Sbjct: 177 VVSCTAIISGYAQLGLDE-----------EALDLFRRLQREGMRSNYVTYASVLTALSGL 225

Query: 88  HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMI 147
            A++  + VH+HVL         L N L++M+ K   L  ++ +FD MPER V+SW  M+
Sbjct: 226 AALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAML 285

Query: 148 SAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESD 206
             Y    +  +A+EL   M  E  V+P+  T+ AVL  C         H G+   G E  
Sbjct: 286 VGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCS--------HGGMEDRGLE-- 335

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
           +F             E+ N +  F      ++  +  ++  F +   V+EA    K+M  
Sbjct: 336 IFY------------EMVNQKDGFEP----EIEHYGCVVDLFGRAGRVEEAFEFIKKMP- 378

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALL-DMYCKCGSLEDA 325
             F    +   S+L AC     + +G  V   +L+ + +   N  +L ++Y   G  +D 
Sbjct: 379 --FEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDV 436

Query: 326 MSVFSRMIQKDVI 338
            +V   M +K VI
Sbjct: 437 RTVRELMKEKAVI 449


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 262/629 (41%), Positives = 378/629 (60%), Gaps = 20/629 (3%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPR-AMKAMHAMQCHGVRADSVTYAE 79
           F+    P   +CN+I R  ++           ++LPR A+     M   G+  D  T+  
Sbjct: 97  FNQIPNPTTFTCNSIIRGYTN-----------KNLPRQAILFYQLMMLQGLDPDRFTFPS 145

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139
           L K C     + E K +H H    GF  + ++ N L+NM+     L  A+ +FD+M  ++
Sbjct: 146 LFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKS 202

Query: 140 VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHC 196
           VVSW TMI AY    +  +A++L   M    V+PN  T   VL AC     L   +Q+H 
Sbjct: 203 VVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHK 262

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
            I + G      + SAL+D+Y K G    A  +FN+MP ++L  WN +I G  ++SD +E
Sbjct: 263 YIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEE 322

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLD 314
           AL+L+  M+ +G   D+ T+ S+L ACT L  LELG  +HV++ K   + D+ L  AL+D
Sbjct: 323 ALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVD 382

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           MY KCGS+E AM VF  M +KDV++W+ +I GLA  G   +AL+LF  M++S +KP+ IT
Sbjct: 383 MYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAIT 442

Query: 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
            VGVL ACSHAG V +G  +F SM   YGI P  EHY CM+D+LGRAG++ EA  LI  M
Sbjct: 443 FVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNM 502

Query: 435 PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494
           P  PD      LL AC++H N  +A  AA++++ LDP++ GTY+LLSNIY++ + W+   
Sbjct: 503 PMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAK 562

Query: 495 EVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAP 554
           ++R+ M  R I K PGCS IEV   +H F   D SHPQ  +I + L  ++++L   GY P
Sbjct: 563 KMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVP 622

Query: 555 DTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTA 614
           D + VL D++ ++KE+ +  HSEKLAI FGL+S T G  IR+ KNLR+C DCH+  K  +
Sbjct: 623 DKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFIS 682

Query: 615 KMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           ++ N+ I++RD  R+HHF  G+CSC D+W
Sbjct: 683 EVYNREIIVRDRNRFHHFTKGSCSCRDFW 711



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 190/326 (58%), Gaps = 6/326 (1%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L  A+++F+Q+P     +  ++I  Y +  +  +A+     M+ +G+ P+ FT+ ++ ++
Sbjct: 90  LPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKS 149

Query: 185 CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           C  L   +QLHC   K+GF SD ++++ L+++Y+  G L +A  VF++M  + +V W ++
Sbjct: 150 CGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATM 209

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKY 302
           IG +AQ     EA+ L++RM+ A    ++ TL +VL AC     LE   QVH ++     
Sbjct: 210 IGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGI 269

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
               +L +AL+D+YCKCG    A  +F++M +K++  W+ MI+G  ++   +EAL LF  
Sbjct: 270 GFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNE 329

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
           M++S +K + +T+  +L AC+H G +E G W H    K+   +D      + ++D+  + 
Sbjct: 330 MQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALG--TALVDMYAKC 387

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALL 447
           G ++ A+++  EMP E D +TW AL+
Sbjct: 388 GSIESAMRVFQEMP-EKDVMTWTALI 412



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 135/272 (49%), Gaps = 9/272 (3%)

Query: 182 LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRDLV 239
           L  C ++  L+Q+H  +++     D F  S ++   A    G L  A  VFN++P     
Sbjct: 47  LEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTF 106

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
             NSII G+   +   +A+  Y+ M   G   D+ T  S+ ++C    +L  G Q+H H 
Sbjct: 107 TCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHS 163

Query: 300 LK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
            K  +  D  + N L++MY  CG L  A  VF +M+ K V+SW+TMI   AQ     EA+
Sbjct: 164 TKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAI 223

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
           KLF  M+++ +KPN IT+V VL AC+ +  +E      K + +  GI       S ++D+
Sbjct: 224 KLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDE-TGIGFHTVLTSALMDV 282

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
             + G    A  L ++MP E +   W  ++  
Sbjct: 283 YCKCGCYPLARDLFNKMP-EKNLFCWNIMING 313


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/591 (41%), Positives = 364/591 (61%), Gaps = 5/591 (0%)

Query: 58   AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            A K    M+  G+  D +T+A ++  C    A+E  + +H  ++  G + +  L N L+N
Sbjct: 571  AYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALIN 630

Query: 118  MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            M+++   L++A  +F  +  RNV+SWT MI  + D   + KA EL   M  +G +P   T
Sbjct: 631  MYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKST 690

Query: 178  YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            +S++L+AC S   L   +++   I+  G+E D  V +ALI  Y+K G + +A  VF++MP
Sbjct: 691  FSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMP 750

Query: 235  TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             RD++ WN +I G+AQN     AL    +M+  G   ++ +  S+L AC+  + LE G +
Sbjct: 751  NRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKR 810

Query: 295  VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
            VH  ++K     D+ +  AL+ MY KCGSLE+A  VF    +K+V++W+ MI+  AQ+G 
Sbjct: 811  VHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGL 870

Query: 353  SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            + +AL  F  M    IKP+  T   +L AC+H+G V +G   F S++  +G+ P  EHY 
Sbjct: 871  ASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYG 930

Query: 413  CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
            C++ LLGRAG+ QEA  LI++MP+ PDA  W  LLGAC++H N  LA  AA   L L+ +
Sbjct: 931  CLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNAR 990

Query: 473  DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
            +P  Y+LLSN+YA + +WD+VA++R+ M  RGI KEPG SWIEV+  IH F  AD SHP+
Sbjct: 991  NPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPE 1050

Query: 533  IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
              +I + LK L  ++   GY+PDT YVL +L+ E +E S+  HSE+LAI +GL+    G 
Sbjct: 1051 TAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKEHQETSLCTHSERLAIAYGLLKTPPGT 1110

Query: 593  TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             IRI KNLRICGDCHT +K  +K+  + I+ RD  R+H F++G CSC D+W
Sbjct: 1111 PIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  234 bits (598), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 133/411 (32%), Positives = 226/411 (54%), Gaps = 9/411 (2%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           +  + D   AMK    MQ  GV+   VT+  L+  C    A  + K++H  +L  G +  
Sbjct: 461 YARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSN 520

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             L N L+NM+ +   + EAQ +F+    R+++SW +MI+ +      + A +L + M +
Sbjct: 521 GHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKK 580

Query: 169 EGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           EG+ P+  T+++VL  C   ++L + RQ+H  II+ G + DV + +ALI++Y + G L++
Sbjct: 581 EGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQD 640

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VF+ +  R+++ W ++IGGFA   +  +A  L+ +M+  GF   +ST +S+L+AC  
Sbjct: 641 AYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMS 700

Query: 286 LALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
            A L+ G +V  H+L   Y+ D  + NAL+  Y K GS+ DA  VF +M  +D++SW+ M
Sbjct: 701 SACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKM 760

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFY 402
           I+G AQNG    AL+    M+   +  N  + V +L ACS    +E+G   H + +K+  
Sbjct: 761 IAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKM 820

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             D      + +I +  + G L+EA ++      E + VTW A++ A   H
Sbjct: 821 QGDV--RVGAALISMYAKCGSLEEAQEVFDNFT-EKNVVTWNAMINAYAQH 868



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 119/398 (29%), Positives = 212/398 (53%), Gaps = 9/398 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A +  + M+  GV  +  TY  ++  C    A+   +L+H+H+   G   +  + N L++
Sbjct: 369 AFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLIS 428

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ +   L  A+ LF+ MP+R+++SW  +I+ Y   +   +A++L   M  EGV+P   T
Sbjct: 429 MYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVT 488

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +  +L AC +       + +H  I++ G +S+  + +AL+++Y + G +  A+ VF    
Sbjct: 489 FLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTR 548

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD++ WNS+I G AQ+   + A  L+  MK+ G   D+ T  SVL  C     LELG Q
Sbjct: 549 ARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQ 608

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H+ +++     D+ L NAL++MY +CGSL+DA  VF  +  ++V+SW+ MI G A  G 
Sbjct: 609 IHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGE 668

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS-MKKFYGIDPGREHY 411
            ++A +LF  M+    KP   T   +L AC  +  +++G       +   Y +D G  + 
Sbjct: 669 DRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN- 727

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
             +I    ++G + +A K+  +MP   D ++W  ++  
Sbjct: 728 -ALISAYSKSGSMTDARKVFDKMP-NRDIMSWNKMIAG 763



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 205/391 (52%), Gaps = 9/391 (2%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   G+  D VTY  L+        ++E K +H   ++ G   +  +   L  M V+   
Sbjct: 275 MSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGD 334

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +  A+   +   +R+VV +  +I+A       ++A E    M  +GV  N  TY +VL A
Sbjct: 335 VAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNA 394

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C +   L     +H  I +VG  SDV + ++LI +YA+ G+L  A  +FN MP RDL+ W
Sbjct: 395 CSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISW 454

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N+II G+A+  D  EA+ LYK+M+  G    + T   +L ACT  +    G  +H  +L+
Sbjct: 455 NAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILR 514

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
                +  L NAL++MY +CGS+ +A +VF     +D+ISW++MI+G AQ+G  + A KL
Sbjct: 515 SGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKL 574

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLL 418
           F  MK   ++P+ IT   VL  C +   +E G   H   ++    +D    +   +I++ 
Sbjct: 575 FLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGN--ALINMY 632

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            R G LQ+A ++ H + +  + ++W A++G 
Sbjct: 633 IRCGSLQDAYEVFHSLRHR-NVMSWTAMIGG 662



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 136/502 (27%), Positives = 254/502 (50%), Gaps = 26/502 (5%)

Query: 14  PSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD 73
           P+ Q R  S T     AS N ++     + D+  R   + DL       +A Q      +
Sbjct: 32  PAEQNR--SSTGAAGGASSNLVS--VKVMRDEQHRGSEREDLS------NAYQPRPTETN 81

Query: 74  SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFD 133
              Y +L++ C  + ++ EAK +H  ++  G  P+ FL N+L+NM+VK   + +A  +F 
Sbjct: 82  RAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFL 141

Query: 134 QMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL-- 191
           +MP R+V+SW ++IS Y       KA +L   M   G  P+  TY ++L AC S   L  
Sbjct: 142 KMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEY 201

Query: 192 -RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
            +++H  II+ G++ D  V+++L+++Y K  +L +A  VF+ +  RD+V +N+++G +AQ
Sbjct: 202 GKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQ 261

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
            + V+E + L+ +M   G   D+ T  ++L A T  ++L+ G ++H   +    + D+ +
Sbjct: 262 KAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRV 321

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
             AL  M+ +CG +  A         +DV+ ++ +I+ LAQ+G+ +EA + +  M+   +
Sbjct: 322 GTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGV 381

Query: 369 KPNYITIVGVLFACSHAGFVEDG---WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
             N  T + VL ACS +  +  G    +H   +     +  G    + +I +  R G L 
Sbjct: 382 VMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIG----NSLISMYARCGDLP 437

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG--TYILLSNI 483
            A +L + MP + D ++W A++       +   A+   K++ + +   PG  T++ L + 
Sbjct: 438 RARELFNTMP-KRDLISWNAIIAGYARREDRGEAMKLYKQMQS-EGVKPGRVTFLHLLSA 495

Query: 484 YANSQKWDEVAEVRKTMRARGI 505
             NS  + +   + + +   GI
Sbjct: 496 CTNSSAYSDGKMIHEDILRSGI 517



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 212/408 (51%), Gaps = 7/408 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A +    MQ  G     +TY  ++  C +   +E  K +H+ ++  G++ +  + N LL
Sbjct: 166 KAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLL 225

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           NM+ K   L  A+ +F  +  R+VVS+ TM+  Y      ++ + L   M  EG+ P+  
Sbjct: 226 NMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKV 285

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           TY  +L A  +  +L   +++H   +  G  SD+ V +AL  ++ + G++  A+      
Sbjct: 286 TYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAF 345

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             RD+VV+N++I   AQ+   +EA   Y +M+  G   +++T  SVL AC+    L  G 
Sbjct: 346 ADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGE 405

Query: 294 QVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
            +H H+ +  H  D+ + N+L+ MY +CG L  A  +F+ M ++D+ISW+ +I+G A+  
Sbjct: 406 LIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARRE 465

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
              EA+KL++ M+   +KP  +T + +L AC+++    DG    + + +  GI       
Sbjct: 466 DRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILR-SGIKSNGHLA 524

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
           + ++++  R G + EA + + E     D ++W +++     H + + A
Sbjct: 525 NALMNMYRRCGSIMEA-QNVFEGTRARDIISWNSMIAGHAQHGSYEAA 571



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 165/316 (52%), Gaps = 9/316 (2%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN  S       F  Q +  +A +    MQ  G +    T++ ++K C++   ++E K V
Sbjct: 651 RNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKV 710

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
             H+L+ G+E +T + N L++ + K   + +A+ +FD+MP R+++SW  MI+ Y    + 
Sbjct: 711 IAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLG 770

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSAL 213
             AL+    M  +GV  N F++ ++L AC S   L   +++H  I+K   + DV V +AL
Sbjct: 771 GTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAAL 830

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           I +YAK G L  A+ VF+    +++V WN++I  +AQ+    +AL+ +  M + G   D 
Sbjct: 831 ISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDG 890

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVF 329
           ST TS+L AC    L+  G ++    L+  H L         L+ +  + G  ++A ++ 
Sbjct: 891 STFTSILSACNHSGLVMEGNRI-FSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLI 949

Query: 330 SRM-IQKDVISWSTMI 344
           ++M    D   W T++
Sbjct: 950 NQMPFPPDAAVWETLL 965


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 241/595 (40%), Positives = 364/595 (61%), Gaps = 5/595 (0%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           +L  + +    MQ  G+  +  TY  +++ C +  A++  + +H  V+  GF+   ++ +
Sbjct: 395 NLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCS 454

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
           +L++M+ K   L+ A V+   + E +VVSWT +IS Y    +  +AL+    ML  G++ 
Sbjct: 455 VLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQS 514

Query: 174 NMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +   +S+ + AC  +  L   RQ+H      G+  D+ + +AL+ +YA+ G ++ A   F
Sbjct: 515 DNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEF 574

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
            ++  +D + WN +I GFAQ+   ++AL ++ +M RA   A   T  S + A   +A ++
Sbjct: 575 EKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIK 634

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G Q+H  ++K  +D D+ ++NAL+  Y KCGS+EDA   F  M +K+ +SW+ MI+G +
Sbjct: 635 QGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYS 694

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           Q+GY  EA+ LFE MK     PN++T VGVL ACSH G V  G  +F+SM K +G+ P  
Sbjct: 695 QHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKP 754

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
            HY+C++DL+ RAG L  A K I EMP EPDA  WR LL AC VH+N ++   AA+ +L 
Sbjct: 755 AHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLE 814

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           L+P+D  TY+LLSN+YA S KWD   + R+ MR RG+ KEPG SWIEV   +HAF V D 
Sbjct: 815 LEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDR 874

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
            HP  DKI + L  L +K   +GY  D   +L D+E EQK+ ++  HSEKLAI FGL+SL
Sbjct: 875 LHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSL 934

Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +    I + KNLR+C DCH++ K  +K+ N+ I++RD  R+HHF+ G CSC DYW
Sbjct: 935 SDTVPIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 117/328 (35%), Positives = 186/328 (56%), Gaps = 6/328 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  G+ A+  TY  L+  CL   ++ E K +H  +L  GF  E+ L N L++++     
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L+    +F+ MP R+V SW  +IS + + KM+++ L+L   M+ E V P   ++++VLRA
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 185 CDSLII----LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           C    I      Q+H  II  G      + + LI +YAK G + +A  VF+ + T+D V 
Sbjct: 121 CSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVS 180

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           W ++I GF+QN   +EA++L+  M  AG        +SVL  CT + L ++G Q+H  V 
Sbjct: 181 WVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVF 240

Query: 301 KYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           KY   L   + NAL+ +Y +  +   A  VFS+M  KD +S++++ISGLAQ G+S  AL+
Sbjct: 241 KYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALE 300

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAG 386
           LF  MK   +KP+ +T+  +L AC+  G
Sbjct: 301 LFTKMKRDYLKPDCVTVASLLSACASNG 328



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 214/426 (50%), Gaps = 15/426 (3%)

Query: 33  NTITRNSSS---LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHA 89
           N  T++S S   ++  F++  Y+ +       MH     G+      ++ ++  C     
Sbjct: 172 NLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTA---GIFPTPYVFSSVLSGCTKIKL 228

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
            +  + +H  V   G   ET++ N L+ ++ +      A+ +F +M  ++ VS+ ++IS 
Sbjct: 229 FDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISG 288

Query: 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESD 206
                 +D ALEL   M R+ ++P+  T +++L AC S   L    QLH  +IK G  SD
Sbjct: 289 LAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSD 348

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
           + V  AL+D+Y    +++ A  +F    T ++V+WN ++  F +  ++ E+  ++++M+ 
Sbjct: 349 MIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQI 408

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLED 324
            G   +Q T  S+LR CT +  L+LG Q+H  V+K  +  ++ + + L+DMY K G L+ 
Sbjct: 409 KGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDT 468

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           A  +   + + DV+SW+ +ISG AQ+    EALK F+ M    I+ + I     + AC+ 
Sbjct: 469 AHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAG 528

Query: 385 AGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
              +  G   H +S    Y  D    +   ++ L  R G+++EA  L  E     D+++W
Sbjct: 529 IQALNQGRQIHAQSYVSGYSEDLSIGN--ALVSLYARCGRIKEAY-LEFEKIDAKDSISW 585

Query: 444 RALLGA 449
             L+  
Sbjct: 586 NGLISG 591


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 252/582 (43%), Positives = 363/582 (62%), Gaps = 19/582 (3%)

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS--------------LLE 126
           +K C A         +H   L  G   + F  N LLN++ K                +LE
Sbjct: 65  LKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLE 124

Query: 127 EAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD 186
             + +FD+MPE++VVSW T++    ++  + +AL L+  M R+G +P+ FT S+VL    
Sbjct: 125 SVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFA 184

Query: 187 SLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
               +R   +LH    + GF  DVFV S+LID+YA       +  VF+ +P RD ++WNS
Sbjct: 185 EGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNS 244

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-- 301
           ++ G AQN  VDEAL L++RM  +G      T +S++ AC  LA L LG Q+H +V++  
Sbjct: 245 MLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGG 304

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
           +D ++ ++++L+DMYCKCG++  A  +F R+   D++SW+ MI G A +G ++EAL LF+
Sbjct: 305 FDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFD 364

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            M++  +KPN+IT + VL ACSHAG V+ GW +F SM   YGI P  EH++ + D LGR 
Sbjct: 365 RMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRP 424

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           GKL+EA   I  M  +P A  W  LL ACKVH+NT LA   AKKI +L+P+  G++I+LS
Sbjct: 425 GKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILS 484

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
           N Y++S +W+E A +RK+MR +G+ KEP CSWIEV  + H F   D SHP  ++I   L 
Sbjct: 485 NTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALN 544

Query: 542 HLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
              +++V  GY P+T+ V QD+E EQK   +  HSEKLAIVFG++S   G TIR+ KNLR
Sbjct: 545 VFSEQMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPGTTIRVMKNLR 604

Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +C DCHT  K  +K+  + IV+RD  R+HHF+DG CSCGD+W
Sbjct: 605 VCVDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 151/296 (51%), Gaps = 11/296 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+  +  M   G + DS T + ++        V     +H      GF  + F+ + L++
Sbjct: 157 ALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLID 216

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+   +  + +  +FD +P R+ + W +M++        D+AL L   ML  G++P   T
Sbjct: 217 MYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVT 276

Query: 178 YSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +S+++ AC    SL++ +QLH  +I+ GF+ +VF+ S+LID+Y K G +  A  +F+ + 
Sbjct: 277 FSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQ 336

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
           + D+V W ++I G A +    EAL L+ RM+      +  T  +VL AC+   L++ G +
Sbjct: 337 SPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWK 396

Query: 295 VHVHVLKYDHDLILNN-----ALLDMYCKCGSLEDAMSVFSRMIQKDVIS-WSTMI 344
               +   DH  I+ +     AL D   + G LE+A +  S M  K   S WST++
Sbjct: 397 YFNSM--SDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLL 450


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 243/591 (41%), Positives = 360/591 (60%), Gaps = 5/591 (0%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A +  H M+  G R +  T + L+        +   + +H  +   GFE +  + N L+ 
Sbjct: 136 AAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIM 195

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M++K   +E+   +F+ M   ++VSW  ++S + D++   +   +   ML EG +PNMFT
Sbjct: 196 MYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFT 255

Query: 178 YSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           + +VLR+C SL+     +Q+H  IIK   + D FV +AL+D+YAK   L +A   F+ + 
Sbjct: 256 FISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLV 315

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD+  W  II G+AQ    ++A+  +++M+R G   ++ TL S L  C+ +A LE G Q
Sbjct: 316 NRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQ 375

Query: 295 VHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H   +K  H  D+ + +AL+D+Y KCG +E A ++F  +I +D++SW+T+ISG +Q+G 
Sbjct: 376 LHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQ 435

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            ++AL+ F  M    I P+  T +GVL ACS  G VE+G   F SM K YGI+P  EHY+
Sbjct: 436 GEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYA 495

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           CM+D+LGRAGK  E    I EM   P ++ W  +LGACK+H N D    AAKK+  ++P 
Sbjct: 496 CMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPM 555

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
              +YILLSNI+A+  +WD+V  +R  M +RGI KEPGCSW+EV+ Q+H F   D SHP+
Sbjct: 556 MDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPK 615

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
           I +I   L  L Q L+ +GY P T  VL ++  ++K + + YHSE+LA+ F L+S    K
Sbjct: 616 IREIYAKLDKLGQSLMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVK 675

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            IRI KNLRIC DCH F KL + + NQ IV+RD  R+HHF+ G CSC D W
Sbjct: 676 PIRIFKNLRICEDCHDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 130/426 (30%), Positives = 214/426 (50%), Gaps = 19/426 (4%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D  + +K    M+    +    T + ++K C    ++ E K++H   L  G E + FL  
Sbjct: 31  DGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGC 90

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L++M+ K   + +A  +F ++   +VV+W+ MI+         +A EL   M R+G RP
Sbjct: 91  SLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARP 150

Query: 174 NMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           N FT S+++    ++  LR    +H  I K GFESD  V + LI +Y K   + +   VF
Sbjct: 151 NQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVF 210

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
             M   DLV WN+++ GF  +        ++ +M   GF  +  T  SVLR+C+ L   E
Sbjct: 211 EAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPE 270

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G QVH H++K   D D  +  AL+DMY K   LEDA   F R++ +D+ SW+ +ISG A
Sbjct: 271 FGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYA 330

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           Q   +++A+K F  M+   IKPN  T+   L  CSH   +E+G       ++ + +    
Sbjct: 331 QTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENG-------RQLHAVAVKA 383

Query: 409 EHY------SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            H+      S ++DL G+ G ++ A + I +     D V+W  ++     H   + A+ A
Sbjct: 384 GHFGDIFVGSALVDLYGKCGCMEHA-EAIFKGLISRDIVSWNTIISGYSQHGQGEKALEA 442

Query: 463 AKKILN 468
            + +L+
Sbjct: 443 FRMMLS 448



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 173/353 (49%), Gaps = 37/353 (10%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           R  +  + M   G + +  T+  +++ C +    E  K VH H++    + + F+   L+
Sbjct: 236 RGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALV 295

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   LE+A V FD++  R++ SWT +IS Y      +KA++    M REG++PN +
Sbjct: 296 DMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEY 355

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T ++ L  C  +  L   RQLH   +K G   D+FV SAL+D+Y K G + +AE +F  +
Sbjct: 356 TLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGL 415

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
            +RD+V WN+II G++Q+   ++AL  ++ M   G   D++T   VL AC+ + L+E G 
Sbjct: 416 ISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGK 475

Query: 294 QVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           +                             D+MS     I   +  ++ M+  L + G  
Sbjct: 476 KRF---------------------------DSMSKIYG-INPSIEHYACMVDILGRAGKF 507

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
            E     E M ++     + T++G   AC   G V+ G    K+ KK + ++P
Sbjct: 508 NEVKIFIEEMNLTPYSLIWETVLG---ACKLHGNVDFGE---KAAKKLFEMEP 554



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/264 (32%), Positives = 139/264 (52%), Gaps = 5/264 (1%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +E A+ LF  MPE+N VSW  +++ Y       K L+L   M     + + FT S VL+ 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 185 CDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C +   LR+   LH   ++ G E D F+  +L+D+Y+K G + +A  VF ++   D+V W
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           +++I G  Q     EA  L+  M+R G   +Q TL+S++   T +  L  G  +H  + K
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICK 180

Query: 302 Y--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
           Y  + D +++N L+ MY K   +ED   VF  M   D++SW+ ++SG   +       ++
Sbjct: 181 YGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRI 240

Query: 360 FESMKVSRIKPNYITIVGVLFACS 383
           F  M +   KPN  T + VL +CS
Sbjct: 241 FYQMLLEGFKPNMFTFISVLRSCS 264



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 4/226 (1%)

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           AE +F  MP ++ V WN+++ G+AQ  D  + L L+ +MK       + TL++VL+ C  
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 286 LALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
              L  G  +H   L+   + D  L  +L+DMY KCG++ DA+ VF+++   DV++WS M
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM 123

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           I+GL Q G+ QEA +LF  M+    +PN  T+  ++   ++ G +  G +    + K YG
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICK-YG 182

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            +      + +I +  ++  +++  K+   M   PD V+W ALL  
Sbjct: 183 FESDNLVSNPLIMMYMKSRCVEDGNKVFEAMT-NPDLVSWNALLSG 227



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 6/128 (4%)

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
           +E A  +F  M +K+ +SW+ +++G AQ G  ++ LKLF  MK    K +  T+  VL  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 382 CSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSC-MIDLLGRAGKLQEAVKLIHEMPYEPD 439
           C++ G + +G   H  +++    ID   E   C ++D+  + G + +A+K+  ++   PD
Sbjct: 61  CANTGSLREGKVLHALALRSGCEID---EFLGCSLVDMYSKCGTVYDALKVFTKIR-NPD 116

Query: 440 AVTWRALL 447
            V W A++
Sbjct: 117 VVAWSAMI 124


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 249/584 (42%), Positives = 369/584 (63%), Gaps = 5/584 (0%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  GV  D V    ++  C    A+ +A+++ +++    F+ +  L   +++M+ K   
Sbjct: 122 MREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGC 181

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +E A+ +FD+M E+NV+SW+ MI+AY       KAL+L   ML  G+ P+  T +++L A
Sbjct: 182 VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYA 241

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C  L  L   R +H  + K G + D FV +AL+D+Y K  E+ +A  +F++MP RDLV W
Sbjct: 242 CSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTW 301

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV--HVHV 299
             +IGG+A+  + +E+L L+ +M+  G   D+  + +V+ AC  L  +     +  ++  
Sbjct: 302 TVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQR 361

Query: 300 LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
            K+  D+IL  A++DM+ KCG +E A  +F RM +K+VISWS MI+    +G  ++AL L
Sbjct: 362 KKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDL 421

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F  M  S I PN IT+V +L+ACSHAG VE+G   F  M + Y +    +HY+C++DLLG
Sbjct: 422 FPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLG 481

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           RAG+L EA+KLI  M  E D   W A LGAC+ H++  LA  AA  +L L PQ+PG YIL
Sbjct: 482 RAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYIL 541

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LSNIYAN+ +W++VA+ R  M  R + K PG +WIEV+ + H F+V D++HP+  +I + 
Sbjct: 542 LSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEM 601

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
           LK L  KL  VGY PDTN+VL D++ E K   +  HSEKLAI FGL++  +   IRI KN
Sbjct: 602 LKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKN 661

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           LR+CGDCHTF KL + +  + I++RD  R+HHF++G CSCGDYW
Sbjct: 662 LRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 133/434 (30%), Positives = 235/434 (54%), Gaps = 26/434 (5%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G R D+ T   +I+ C     ++  +L+H+ V   G + + F+   L++M+VK   +E+A
Sbjct: 25  GARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDA 84

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + LFD+M ER++V+WT MI  Y +    +++L L   M  EGV P+      V+ AC  L
Sbjct: 85  RFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKL 144

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             +   R +   I +  F+ DV + +A+ID+YAK G + +A  +F+ M  ++++ W+++I
Sbjct: 145 GAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMI 204

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD 305
             +  +    +AL+L++ M  +G   D+ TL S+L AC+ L  L++G  +H  V K+  D
Sbjct: 205 AAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLD 264

Query: 306 L--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
           L   +  AL+DMY KC  +EDA  +F +M ++D+++W+ MI G A+ G + E+L LF+ M
Sbjct: 265 LDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKM 324

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDG--WNHFKSMKKF-YGIDPGREHYSCMIDLLGR 420
           +   + P+ + +V V+FAC+  G +      + +   KKF   +  G    + MID+  +
Sbjct: 325 REEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILG----TAMIDMHAK 380

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD------P 474
            G ++ A ++   M  E + ++W A++ A   H          +K L+L P        P
Sbjct: 381 CGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ-------GRKALDLFPMMLRSGILP 432

Query: 475 GTYILLSNIYANSQ 488
               L+S +YA S 
Sbjct: 433 NKITLVSLLYACSH 446



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 103/291 (35%), Positives = 170/291 (58%), Gaps = 11/291 (3%)

Query: 166 MLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           ++R G RP+ +T   V+RAC  L  L   R +H  + K G + D FV +AL+D+Y K  E
Sbjct: 21  LIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCRE 80

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           + +A  +F++M  RDLV W  +IGG+A+    +E+L L+++M+  G   D+  + +V+ A
Sbjct: 81  IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFA 140

Query: 283 CTGLALLELGTQV--HVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           C  L  +     +  ++   K+  D+IL  A++DMY KCG +E A  +F RM +K+VISW
Sbjct: 141 CAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISW 200

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           S MI+    +G  ++AL LF  M  S + P+ IT+  +L+ACS    ++ G      + K
Sbjct: 201 SAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYK 260

Query: 401 FYGIDPGREHYSC--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           F G+D   +H+ C  ++D+ G+  ++++A  L  +MP E D VTW  ++G 
Sbjct: 261 F-GLDL--DHFVCAALVDMYGKCREIEDARFLFDKMP-ERDLVTWTVMIGG 307



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 184/389 (47%), Gaps = 46/389 (11%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           + Y     +A+     M   G+  D +T A L+  C     ++  +L+H+ V   G + +
Sbjct: 207 YGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLD 266

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F+   L++M+ K   +E+A+ LFD+MPER++V+WT MI  Y +    +++L L   M  
Sbjct: 267 HFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMRE 326

Query: 169 EGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           EGV P+      V+ AC  L  +   R +   I +  F+ DV + +A+ID++AK G + +
Sbjct: 327 EGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVES 386

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F+ M  ++++ W+++I  +  +    +AL+L+  M R+G   ++ TL S+L AC+ 
Sbjct: 387 AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACS- 445

Query: 286 LALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-----IQKDVISW 340
                                             G +E+ +  FS M     ++ DV  +
Sbjct: 446 --------------------------------HAGLVEEGLRFFSLMWEDYSVRADVKHY 473

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           + ++  L + G   EALKL ESM V + +  +   +G   AC     V        S+ +
Sbjct: 474 TCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLG---ACRTHKDVVLAEKAATSLLE 530

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
               +PG  HY  + ++   AG+ ++  K
Sbjct: 531 LQPQNPG--HYILLSNIYANAGRWEDVAK 557



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 130/249 (52%), Gaps = 11/249 (4%)

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD 303
           ++GGFA+  D       ++ + R G   D  TL  V+RAC  L  L++G  +H  V K+ 
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 304 HDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
            DL   +  AL+DMY KC  +EDA  +F +M ++D+++W+ MI G A+ G + E+L LFE
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDG--WNHFKSMKKF-YGIDPGREHYSCMIDLL 418
            M+   + P+ + +V V+FAC+  G +      + +   KKF   +  G    + MID+ 
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG----TAMIDMY 176

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
            + G ++ A ++   M  E + ++W A++ A   H     A+   + +L+     P    
Sbjct: 177 AKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQGRKALDLFRMMLS-SGMLPDKIT 234

Query: 479 LLSNIYANS 487
           L S +YA S
Sbjct: 235 LASLLYACS 243


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 248/594 (41%), Positives = 376/594 (63%), Gaps = 5/594 (0%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
              A++    M+  G + ++ T+A ++K CL     +  K VH  VL   +E + ++   
Sbjct: 128 FSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVG 187

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           LL ++ +    ++A   F  MP+ +V+ W+ MIS +  +  ++KALE+   M R  V PN
Sbjct: 188 LLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPN 247

Query: 175 MFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
            FT+S+VL+A    +SL + + +H   +K G  +DVFV +AL+  YAK G +  +  +F 
Sbjct: 248 QFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFE 307

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
            +  R+ V WN+II  + Q  D + AL+L+  M R    A + T +S+LRAC  LA LEL
Sbjct: 308 ALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALEL 367

Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G QVH    K  Y  D+ + NAL+DMY KCGS++DA  +F  +  +D +SW+ +I G + 
Sbjct: 368 GLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSM 427

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           +G   EA+K+F  MK ++ KP+ +T VGVL ACS+ G +++G  +F SMK+ YGI+P  E
Sbjct: 428 HGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCME 487

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
           HY+CM+ L+GR+G L +AVK I ++P+EP  + WRALLGAC +H + +L   +A+++L L
Sbjct: 488 HYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLEL 547

Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
           +P+D  +++LLSNIYA +++W  VA VRK M+ +G+ KEPG SWIE    +H F VAD+S
Sbjct: 548 EPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTS 607

Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
           H  +  IN  L+ L  K    GY+P  N VL D+E ++KE  +  HSE+LA+ FGL+ + 
Sbjct: 608 HADLKLINGMLEFLNMKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALAFGLVRMP 667

Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            G  IRI KNLRIC DCH+  KL +K+  + I++RD  R+HHF++G+CSC DYW
Sbjct: 668 AGCPIRIIKNLRICVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 129/476 (27%), Positives = 244/476 (51%), Gaps = 18/476 (3%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN+ S +     +        A +    +   G   +   +  ++K  ++    E  ++V
Sbjct: 9   RNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEWAELGRIV 68

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H  VL  G+   TF+   L++ +     +  A+ +FD++  +++VSWT MI++Y +    
Sbjct: 69  HGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCF 128

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSAL 213
            +ALE    M   G +PN FT++ VL+AC  L      + +HC ++K  +E D++V   L
Sbjct: 129 SEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGL 188

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           +++Y + G+  +A   F +MP  D++ W+ +I  FAQ+   ++AL ++ +M+RA    +Q
Sbjct: 189 LELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQ 248

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
            T +SVL+A   +  L+L   +H H LK     D+ ++NAL+  Y KCG +E +M +F  
Sbjct: 249 FTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEA 308

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           +  ++ +SW+T+I    Q G  + AL LF +M   +++   +T   +L AC+    +E G
Sbjct: 309 LSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELG 368

Query: 392 WN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
              H  + K  YG D    +   +ID+  + G +++A + + +M    D V+W A++   
Sbjct: 369 LQVHCLTAKTIYGQDVAVGN--ALIDMYAKCGSIKDA-RFMFDMLDLRDKVSWNAIICGY 425

Query: 451 KVHRNTDLAICAAKKILNLDPQ-----DPGTYILLSNIYANSQKWDEVAEVRKTMR 501
            +H    L +  A K+ NL  +     D  T++ + +  +N+ + DE  +   +M+
Sbjct: 426 SMH---GLGV-EAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMK 477



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/257 (38%), Positives = 150/257 (58%), Gaps = 5/257 (1%)

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
           ++FD+MPERN VS+ T+I  Y  +    +A EL   +  EG   N F ++ VL+   S+ 
Sbjct: 1   MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME 60

Query: 190 ---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
              + R +H  ++KVG+ S+ F+ +ALID Y+  G +  A  VF+E+ ++D+V W  +I 
Sbjct: 61  WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDH 304
            +A+N    EAL  + +M+ AGF  +  T   VL+AC GL   + G  VH  VLK  Y+ 
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYER 180

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           DL +   LL++Y +CG  +DA   F  M + DVI WS MIS  AQ+G S++AL++F  M+
Sbjct: 181 DLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMR 240

Query: 365 VSRIKPNYITIVGVLFA 381
            + + PN  T   VL A
Sbjct: 241 RAFVIPNQFTFSSVLQA 257


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 239/584 (40%), Positives = 366/584 (62%), Gaps = 5/584 (0%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  G+  +  TY  +++ C +  A++  + +H  V+  GF+   ++ ++L++M+ K   
Sbjct: 406 MQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGE 465

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L+ A+ +  ++ E +VVSWT MI+ Y    +  +AL+L   M  +G+R +   +S+ + A
Sbjct: 466 LDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISA 525

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C  +  L   +Q+H      G+  D+ + +AL+ +YA+ G  ++A   F ++  +D + W
Sbjct: 526 CAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISW 585

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N++I GFAQ+   +EAL ++ +M +AG  A+  T  S + A    A ++ G Q+H  ++K
Sbjct: 586 NALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIK 645

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
             YD +   +N L+ +Y KCGS+EDA   F  M +K+V+SW+ MI+G +Q+GY  EA+ L
Sbjct: 646 TGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSL 705

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           FE MK   + PN++T VGVL ACSH G V +G ++F+SM K +G+ P  EHY C++DLLG
Sbjct: 706 FEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLG 765

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           RA  L  A + I EMP EPDA+ WR LL AC VH+N ++   AA+ +L L+P+D  TY+L
Sbjct: 766 RAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVL 825

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LSN+YA S KWD     R+ M+ RG+ KEPG SWIEV   IHAF V D  HP  ++I ++
Sbjct: 826 LSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEY 885

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
           +  L ++   +GY  D   +L D+E EQK+ +   HSEKLA+ FGL+SLT    IR+ KN
Sbjct: 886 IDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKN 945

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           LR+C DCH + K  +K+ N+ IV+RD  R+HHF+ G CSC DYW
Sbjct: 946 LRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  231 bits (590), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 130/402 (32%), Positives = 213/402 (52%), Gaps = 7/402 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           RA++    MQ   ++ D VT A L+  C +  A  + K +H++V+  G   +  +   LL
Sbjct: 297 RALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLL 356

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +++VK   +E A   F      NVV W  M+ AY       ++  + + M  EG+ PN +
Sbjct: 357 DLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQY 416

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           TY ++LR C SL  L    Q+H  +IK GF+ +V+V S LID+YAK GEL  A  +   +
Sbjct: 417 TYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRL 476

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
              D+V W ++I G+ Q+    EAL L++ M+  G  +D    +S + AC G+  L  G 
Sbjct: 477 REEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQ 536

Query: 294 QVHV--HVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+H   ++  Y  DL + NAL+ +Y +CG  +DA   F ++  KD ISW+ +ISG AQ+G
Sbjct: 537 QIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSG 596

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           + +EAL++F  M  + ++ N  T    + A ++   ++ G     +M    G D   E  
Sbjct: 597 HCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQG-KQIHAMMIKTGYDSETEAS 655

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           + +I L  + G +++A +   EMP E + V+W A++     H
Sbjct: 656 NVLITLYSKCGSIEDAKREFFEMP-EKNVVSWNAMITGYSQH 696



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 189/328 (57%), Gaps = 6/328 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  G+RA+  TY  L + C    ++ +AK +H  +   GF+ E  L + L+++++    
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           ++ A  LFD +P  NV  W  +IS     K+  + L L   M+ E V P+  T+++VLRA
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 185 CDS----LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           C        +  Q+H  II  GF S   V + LID+Y+K G +  A+ VF  +  +D V 
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS 180

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           W ++I G +QN   DEA+ L+ +M ++         +SVL ACT + L +LG Q+H  ++
Sbjct: 181 WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIV 240

Query: 301 KY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K+    +  + NAL+ +Y + G+L  A  +FS+M ++D IS++++ISGLAQ G+S  AL+
Sbjct: 241 KWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQ 300

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAG 386
           LFE M++  +KP+ +T+  +L AC+  G
Sbjct: 301 LFEKMQLDCMKPDCVTVASLLSACASVG 328



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 201/380 (52%), Gaps = 9/380 (2%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
            ++ ++  C      +  + +H  ++  G   ETF+ N L+ ++ ++  L  A+ +F +M
Sbjct: 215 VFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKM 274

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILR 192
             R+ +S+ ++IS       +D+AL+L   M  + ++P+  T +++L AC S+      +
Sbjct: 275 HRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGK 334

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           QLH  +IK+G  SD+ +  +L+D+Y K  ++  A   F    T ++V+WN ++  + Q  
Sbjct: 335 QLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLG 394

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNN 310
           ++ E+  ++ +M+  G   +Q T  S+LR CT L  L+LG Q+H  V+K  +  ++ + +
Sbjct: 395 NLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCS 454

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
            L+DMY K G L+ A  +  R+ ++DV+SW+ MI+G  Q+    EALKLF+ M+   I+ 
Sbjct: 455 VLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRS 514

Query: 371 NYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           + I     + AC+    +  G   H +S    Y  D    +   ++ L  R G+ Q+A  
Sbjct: 515 DNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGN--ALVSLYARCGRAQDAY- 571

Query: 430 LIHEMPYEPDAVTWRALLGA 449
           L  E     D ++W AL+  
Sbjct: 572 LAFEKIDAKDNISWNALISG 591



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 101/231 (43%), Gaps = 37/231 (16%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A++    M   GV A+  T+   +        +++ K +H  ++  G++ ET   N+L+
Sbjct: 600 EALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLI 659

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
            ++ K   +E+A+  F +MPE+NVVSW  MI+ Y       +A+ L   M + G+ PN  
Sbjct: 660 TLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHV 719

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRS---------------ALIDIYAKLG 221
           T+  VL AC         H G++  G     + RS                ++D+  +  
Sbjct: 720 TFVGVLSACS--------HVGLVNEGLS---YFRSMSKEHGLVPKPEHYVCVVDLLGRAA 768

Query: 222 ELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
            L  A     EMP   D ++W +++           A  ++K ++   FAA
Sbjct: 769 LLCCAREFIEEMPIEPDAMIWRTLL----------SACTVHKNIEIGEFAA 809



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 11/203 (5%)

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGS 321
           M+  G  A+  T   +   C     L    ++H  + K  +D + +L + L+D+Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
           +++A+ +F  +   +V  W+ +ISGL     + + L LF  M    + P+  T   VL A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 382 CS--HAGFVEDGWNHFKSMKKFYGIDPGREHYSC--MIDLLGRAGKLQEAVKLIHEMPYE 437
           CS   A F      H K +   +G  P      C  +IDL  + G +  A KL+ E  + 
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSP----LVCNPLIDLYSKNGHVDLA-KLVFERLFL 175

Query: 438 PDAVTWRALLGACKVHRNTDLAI 460
            D+V+W A++     +   D AI
Sbjct: 176 KDSVSWVAMISGLSQNGREDEAI 198


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/575 (41%), Positives = 372/575 (64%), Gaps = 12/575 (2%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           + AD   Y  L+K C     + + ++VH H+L   F  +  + N LLNM+ K   LEEA+
Sbjct: 56  IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF---MLREGVRPNMFTYSAVLRACD 186
            +F++MP+R+ V+WTT+IS Y     +D+  + L+F   MLR G  PN FT S+V++A  
Sbjct: 116 KVFEKMPQRDFVTWTTLISGYS---QHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAA 172

Query: 187 SL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
           +        QLH   +K GF+S+V V SAL+D+Y + G + +A+ VF+ + +R+ V WN+
Sbjct: 173 AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNA 232

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD 303
           +I G A+ S  ++AL L++ M R GF     +  S+  AC+    LE G  VH +++K  
Sbjct: 233 LIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSG 292

Query: 304 HDLIL--NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
             L+    N LLDMY K GS+ DA  +F R+ ++DV+SW+++++  AQ+G+ +EA+  FE
Sbjct: 293 EKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFE 352

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            M+   I+PN I+ + VL ACSH+G +++GW++++ MKK  GI P   HY  ++DLLGRA
Sbjct: 353 EMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKK-DGIVPEAWHYVTVVDLLGRA 411

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           G L  A++ I EMP EP A  W+ALL AC++H+NT+L   AA+ +  LDP DPG +++L 
Sbjct: 412 GDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILY 471

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
           NIYA+  +W++ A VRK M+  G+ KEP CSW+E+   IH F   D  HPQ ++I +  +
Sbjct: 472 NIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWE 531

Query: 542 HLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
            ++ K+  +GY PDT++V+  ++ +++E ++QYHSEK+A+ F L++   G TI I+KN+R
Sbjct: 532 EVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIR 591

Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGN 636
           +CGDCHT  KL +K+  + I++RD  R+HHF+D +
Sbjct: 592 VCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDAS 626



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 157/305 (51%), Gaps = 13/305 (4%)

Query: 52  QRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Q D P  A+   + M   G   +  T + +IK   A         +H   +  GF+    
Sbjct: 138 QHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVH 197

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           + + LL+++ ++ L+++AQ++FD +  RN VSW  +I+ +      +KALEL   MLR+G
Sbjct: 198 VGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDG 257

Query: 171 VRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
            RP+ F+Y+++  AC S   L Q   +H  +IK G +   F  + L+D+YAK G + +A 
Sbjct: 258 FRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDAR 317

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            +F+ +  RD+V WNS++  +AQ+    EA+  ++ M+R G   ++ +  SVL AC+   
Sbjct: 318 KIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSG 377

Query: 288 LLELGTQVHVHVLKYDHDLILNNA-----LLDMYCKCGSLEDAMSVFSRM-IQKDVISWS 341
           LL+ G   +  + K   D I+  A     ++D+  + G L  A+     M I+     W 
Sbjct: 378 LLDEGWHYYELMKK---DGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWK 434

Query: 342 TMISG 346
            +++ 
Sbjct: 435 ALLNA 439



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 126/287 (43%), Gaps = 42/287 (14%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++    M   G R    +YA L   C +   +E+ K VH +++  G +   F  N LL
Sbjct: 245 KALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLL 304

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   + +A+ +FD++ +R+VVSW ++++AY       +A+     M R G+RPN  
Sbjct: 305 DMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEI 364

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           ++ +VL AC         H G++  G+                          + E+  +
Sbjct: 365 SFLSVLTACS--------HSGLLDEGWH-------------------------YYELMKK 391

Query: 237 DLVV---WN--SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           D +V   W+  +++    +  D++ AL   + M     AA      ++L AC      EL
Sbjct: 392 DGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAA---IWKALLNACRMHKNTEL 448

Query: 292 GTQVHVHVLKYDHDLILNNALL-DMYCKCGSLEDAMSVFSRMIQKDV 337
           G     HV + D D    + +L ++Y   G   DA  V  +M +  V
Sbjct: 449 GAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGV 495


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 248/656 (37%), Positives = 388/656 (59%), Gaps = 49/656 (7%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN  S       +C   D    +K  + M   GVR D   + ++ K C         K V
Sbjct: 74  RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 133

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           ++++LS GFE  + +   +L+M +K   ++ A+  F+++  ++V  W  M+S Y      
Sbjct: 134 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEF 193

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVG-FESDVFVRSA 212
            KAL +   M+ EGV+PN  T ++ + AC +L +LR   ++H   IKV   +SD+ V ++
Sbjct: 194 KKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNS 253

Query: 213 LIDIYAK----------LGELRNAE---------------------------------CV 229
           L+D YAK           G ++  +                                  V
Sbjct: 254 LVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSV 313

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F+E+ TRD+VVWNSII   AQ+     AL+L + M  +    +  T+ S L AC+ LA L
Sbjct: 314 FSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAAL 373

Query: 290 ELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
             G ++H  +++   D    + N+L+DMY +CGS++ +  +F  M Q+D++SW+ MIS  
Sbjct: 374 RQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVY 433

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
             +G+  +A+ LF+  +   +KPN+IT   +L ACSH+G +E+GW +FK MK  Y +DP 
Sbjct: 434 GMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPA 493

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            E Y+CM+DLL RAG+  E ++ I +MP+EP+A  W +LLGAC++H N DLA  AA+ + 
Sbjct: 494 VEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLF 553

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
            L+PQ  G Y+L++NIY+ + +W++ A++R  M+ RG+TK PGCSWIEV +++H+F V D
Sbjct: 554 ELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGD 613

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
           +SHP +++I+  ++ L   +  +GY PDTN+VLQD++ ++KE S+  HSEK+A+ FGL+S
Sbjct: 614 TSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLIS 673

Query: 588 LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            T G  +RI KNLR+CGDCH+  K  +K+E + I++RD  R+HHF DG CSCGDYW
Sbjct: 674 TTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 121/429 (28%), Positives = 219/429 (51%), Gaps = 57/429 (13%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           YA +++ C   + +     VH  ++  G +   FL + LL ++ +   +E+A+ +FD+M 
Sbjct: 13  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 72

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQ 193
           ERNV SWT ++  YC     ++ ++L   M+ EGVRP+ F +  V +AC  L    + + 
Sbjct: 73  ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 132

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           ++  ++ +GFE +  V+ +++D++ K G +  A   F E+  +D+ +WN ++ G+    +
Sbjct: 133 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 192

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHDLILNN 310
             +ALN++++M   G   +  T+ S + ACT L+LL  G ++H + +K    D DL++ N
Sbjct: 193 FKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGN 252

Query: 311 ALLDMYCKCGSLE-----------------DAM--------------------------S 327
           +L+D Y KC S+E                 +AM                          S
Sbjct: 253 SLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACS 312

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           VFS +  +DV+ W+++IS  AQ+G S  AL L   M +S ++ N +T+V  L ACS    
Sbjct: 313 VFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAA 372

Query: 388 VEDGWNHFKSMKKFY---GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           +  G    K + +F    G+D      + +ID+ GR G +Q++ ++   MP + D V+W 
Sbjct: 373 LRQG----KEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWN 427

Query: 445 ALLGACKVH 453
            ++    +H
Sbjct: 428 VMISVYGMH 436


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/591 (41%), Positives = 360/591 (60%), Gaps = 5/591 (0%)

Query: 58   AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            A K    MQ   +  D++T+A ++  C    A+E  K +H  +   G + +  L N L+N
Sbjct: 516  AYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALIN 575

Query: 118  MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            M+++   L++A+ +F  +  R+V+SWT MI    D   + KA+EL   M  EG RP   T
Sbjct: 576  MYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKST 635

Query: 178  YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            +S++L+ C S   L   +++   I+  G+E D  V +ALI  Y+K G + +A  VF++MP
Sbjct: 636  FSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMP 695

Query: 235  TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            +RD+V WN II G+AQN     A+    +M+      ++ +  S+L AC+  + LE G +
Sbjct: 696  SRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKR 755

Query: 295  VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
            VH  ++K     D+ +  AL+ MY KCGS  +A  VF  +I+K+V++W+ MI+  AQ+G 
Sbjct: 756  VHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGL 815

Query: 353  SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            + +AL  F  M+   IKP+  T   +L AC+HAG V +G+  F SM+  YG+ P  EHY 
Sbjct: 816  ASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYG 875

Query: 413  CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
            C++ LLGRA + QEA  LI++MP+ PDA  W  LLGAC++H N  LA  AA   L L+ +
Sbjct: 876  CLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNAR 935

Query: 473  DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
            +P  YILLSN+YA + +WD+VA++R+ M  RGI KEPG SWIEV+  IH F  AD SHP+
Sbjct: 936  NPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPE 995

Query: 533  IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
              +I   LK L  ++   GY PDT +VL DL    +E S+  HSE+LAI +GL+    G 
Sbjct: 996  TAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGT 1055

Query: 593  TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             IRI KNLRICGDCHT +K  +K+  + I+ RD  R+H F++G CSC DYW
Sbjct: 1056 PIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 129/411 (31%), Positives = 223/411 (54%), Gaps = 9/411 (2%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           +  + D   AM+    MQ  GV+   VT+  L+  C    A  + K++H  +L  G +  
Sbjct: 406 YARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSN 465

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             L N L+NM+ +   L EAQ +F+    R+V+SW +MI+ +      + A +L   M  
Sbjct: 466 GHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQN 525

Query: 169 EGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           E + P+  T+++VL  C   ++L + +Q+H  I + G + DV + +ALI++Y + G L++
Sbjct: 526 EELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQD 585

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VF+ +  RD++ W ++IGG A   +  +A+ L+ +M+  GF   +ST +S+L+ CT 
Sbjct: 586 ARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTS 645

Query: 286 LALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
            A L+ G +V  ++L   Y+ D  + NAL+  Y K GS+ DA  VF +M  +D++SW+ +
Sbjct: 646 SACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKI 705

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFY 402
           I+G AQNG  Q A++    M+   + PN  + V +L ACS    +E+G   H + +K+  
Sbjct: 706 IAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKL 765

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             D      + +I +  + G   EA ++   +  E + VTW A++ A   H
Sbjct: 766 QGDV--RVGAALISMYAKCGSQGEAQEVFDNI-IEKNVVTWNAMINAYAQH 813



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 119/398 (29%), Positives = 209/398 (52%), Gaps = 9/398 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A +  + M+  GV  +  TY  ++  C    A+E  KL+H+H+   G   +  + N L++
Sbjct: 314 AFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALIS 373

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ +   L +A+ LF  MP+R+++SW  +I+ Y   +   +A+ L   M  EGV+P   T
Sbjct: 374 MYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVT 433

Query: 178 YSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +  +L AC    +    + +H  I++ G +S+  + +AL+++Y + G L  A+ VF    
Sbjct: 434 FLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD++ WNS+I G AQ+   + A  L++ M+      D  T  SVL  C     LELG Q
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ 553

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  + +     D+ L NAL++MY +CGSL+DA +VF  +  +DV+SW+ MI G A  G 
Sbjct: 554 IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGE 613

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS-MKKFYGIDPGREHY 411
             +A++LF  M+    +P   T   +L  C+ +  +++G       +   Y +D G  + 
Sbjct: 614 DMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGN- 672

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
             +I    ++G + +A ++  +MP   D V+W  ++  
Sbjct: 673 -ALISAYSKSGSMTDAREVFDKMPSR-DIVSWNKIIAG 708



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 235/450 (52%), Gaps = 16/450 (3%)

Query: 66  QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL 125
           Q      +  TY  L++ C  +  + EAK +H  ++     P+ FL N+L+NM+VK   +
Sbjct: 19  QPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSV 78

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
            +A  +F +MP R+V+SW ++IS Y       KA +L   M   G  PN  TY ++L AC
Sbjct: 79  LDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTAC 138

Query: 186 DSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
            S   L   +++H  IIK G++ D  V+++L+ +Y K G+L  A  VF  +  RD+V +N
Sbjct: 139 YSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYN 198

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK- 301
           +++G +AQ + V E L L+ +M   G + D+ T  ++L A T  ++L+ G ++H   ++ 
Sbjct: 199 TMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE 258

Query: 302 -YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
             + D+ +  AL+ M  +CG ++ A   F     +DV+ ++ +I+ LAQ+G++ EA + +
Sbjct: 259 GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQY 318

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDG---WNHFKSMKKFYGIDPGREHYSCMIDL 417
             M+   +  N  T + +L ACS +  +E G    +H         +  G    + +I +
Sbjct: 319 YRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIG----NALISM 374

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG-- 475
             R G L +A +L + MP + D ++W A++       +   A+   K++ + +   PG  
Sbjct: 375 YARCGDLPKARELFYTMP-KRDLISWNAIIAGYARREDRGEAMRLYKQMQS-EGVKPGRV 432

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           T++ L +  ANS  + +   + + +   GI
Sbjct: 433 TFLHLLSACANSSAYADGKMIHEDILRSGI 462



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 223/424 (52%), Gaps = 9/424 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A +    MQ  G   + +TY  ++  C +   +E  K +H+ ++  G++ +  + N LL
Sbjct: 111 KAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLL 170

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   L  A+ +F  +  R+VVS+ TM+  Y       + L L   M  EG+ P+  
Sbjct: 171 SMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKV 230

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           TY  +L A  +  +L   +++H   ++ G  SD+ V +AL+ +  + G++ +A+  F   
Sbjct: 231 TYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGT 290

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             RD+VV+N++I   AQ+    EA   Y RM+  G A +++T  S+L AC+    LE G 
Sbjct: 291 ADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGK 350

Query: 294 QVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
            +H H+ +  H  D+ + NAL+ MY +CG L  A  +F  M ++D+ISW+ +I+G A+  
Sbjct: 351 LIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRE 410

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
              EA++L++ M+   +KP  +T + +L AC+++    DG    + + +  GI       
Sbjct: 411 DRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILR-SGIKSNGHLA 469

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN--L 469
           + ++++  R G L EA + + E     D ++W +++     H + + A    +++ N  L
Sbjct: 470 NALMNMYRRCGSLMEA-QNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEEL 528

Query: 470 DPQD 473
           +P +
Sbjct: 529 EPDN 532



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 137/242 (56%), Gaps = 3/242 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++    MQ  G R    T++ ++K C +   ++E K V  ++L+ G+E +T + N L+
Sbjct: 616 KAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALI 675

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           + + K   + +A+ +FD+MP R++VSW  +I+ Y    +   A+E    M  + V PN F
Sbjct: 676 SAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKF 735

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           ++ ++L AC S   L   +++H  I+K   + DV V +ALI +YAK G    A+ VF+ +
Sbjct: 736 SFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNI 795

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +++V WN++I  +AQ+    +AL  +  M++ G   D ST TS+L AC    L+  G 
Sbjct: 796 IEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGY 855

Query: 294 QV 295
           Q+
Sbjct: 856 QI 857


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 240/592 (40%), Positives = 365/592 (61%), Gaps = 5/592 (0%)

Query: 57   RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
             A +    M+  GV  +  T A L+        +   + +H  V   GFE +  + N L+
Sbjct: 414  EAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALV 473

Query: 117  NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
             M++K   +++   +F+    R+++SW  ++S + D +  D  L +   ML EG  PNM+
Sbjct: 474  TMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMY 533

Query: 177  TYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
            T+ ++LR+C SL    + +Q+H  I+K   + + FV +AL+D+YAK   L +AE +FN +
Sbjct: 534  TFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL 593

Query: 234  PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
              RDL  W  I+ G+AQ+   ++A+  + +M+R G   ++ TL S L  C+ +A L+ G 
Sbjct: 594  IKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGR 653

Query: 294  QVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
            Q+H   +K     D+ + +AL+DMY KCG +EDA  VF  ++ +D +SW+T+I G +Q+G
Sbjct: 654  QLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHG 713

Query: 352  YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
               +ALK FE+M      P+ +T +GVL ACSH G +E+G  HF S+ K YGI P  EHY
Sbjct: 714  QGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHY 773

Query: 412  SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
            +CM+D+LGRAGK  E    I EM    + + W  +LGACK+H N +    AA K+  L+P
Sbjct: 774  ACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEP 833

Query: 472  QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
            +    YILLSN++A    WD+V  VR  M  RG+ KEPGCSW+EVN Q+H F   D SHP
Sbjct: 834  EIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHP 893

Query: 532  QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
            +I +I+  L+ L QKL+ VGY P+T++VL ++   +K++ + YHSE+LA+ F L+S +  
Sbjct: 894  KIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTR 953

Query: 592  KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KTIRI KNLRICGDCH F K  +++ NQ +V+RD   +HHF++G+CSC ++W
Sbjct: 954  KTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/410 (33%), Positives = 223/410 (54%), Gaps = 8/410 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y+ +++ C ++  + E K +H  V+  G  P++ L N L+N++ K      A  +F ++P
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQ 193
           ER+VVSWT +I+ +        A+ L   M REGV  N FTY+  L+AC   + L   +Q
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H   IKVG  SD+FV SAL+D+YAK GE+  AE VF  MP ++ V WN+++ GFAQ  D
Sbjct: 251 VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGD 310

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNA 311
            ++ LNL+ RM  +     + TL++VL+ C     L  G  VH   ++   + D  ++  
Sbjct: 311 AEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCC 370

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+DMY KCG   DA+ VF R+   DV+SWS +I+ L Q G S+EA ++F+ M+ S + PN
Sbjct: 371 LVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPN 430

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
             T+  ++ A +  G +  G +    + K YG +      + ++ +  + G +Q+  + +
Sbjct: 431 QFTLASLVSAATDLGDLYYGESIHACVCK-YGFEYDNTVCNALVTMYMKIGSVQDGCR-V 488

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
            E     D ++W ALL     +   D  +    ++L  +  +P  Y  +S
Sbjct: 489 FEATTNRDLISWNALLSGFHDNETCDTGLRIFNQML-AEGFNPNMYTFIS 537



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 218/425 (51%), Gaps = 7/425 (1%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           F    D  + +     M    +     T + ++K C     +   ++VH+  +  G E +
Sbjct: 305 FAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELD 364

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F+   L++M+ K  L  +A  +F ++ + +VVSW+ +I+       + +A E+   M  
Sbjct: 365 EFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRH 424

Query: 169 EGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
            GV PN FT ++++ A   L  L     +H  + K GFE D  V +AL+ +Y K+G +++
Sbjct: 425 SGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQD 484

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
              VF     RDL+ WN+++ GF  N   D  L ++ +M   GF  +  T  S+LR+C+ 
Sbjct: 485 GCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSS 544

Query: 286 LALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L+ ++LG QVH  ++K   D +  +  AL+DMY K   LEDA ++F+R+I++D+ +W+ +
Sbjct: 545 LSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVI 604

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           ++G AQ+G  ++A+K F  M+   +KPN  T+   L  CS    ++ G     SM    G
Sbjct: 605 VAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSG-RQLHSMAIKAG 663

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
                   S ++D+  + G +++A +++ +     D V+W  ++     H     A+ A 
Sbjct: 664 QSGDMFVASALVDMYAKCGCVEDA-EVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAF 722

Query: 464 KKILN 468
           + +L+
Sbjct: 723 EAMLD 727



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 169/332 (50%), Gaps = 5/332 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  GV A+  TYA  +K C     +E  K VH   +  G   + F+ + L++++ K   
Sbjct: 220 MRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGE 279

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +  A+ +F  MP++N VSW  +++ +      +K L L   M    +  + FT S VL+ 
Sbjct: 280 MVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKG 339

Query: 185 CDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C +   LR    +H   I++G E D F+   L+D+Y+K G   +A  VF  +   D+V W
Sbjct: 340 CANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSW 399

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           ++II    Q     EA  ++KRM+ +G   +Q TL S++ A T L  L  G  +H  V K
Sbjct: 400 SAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCK 459

Query: 302 Y--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
           Y  ++D  + NAL+ MY K GS++D   VF     +D+ISW+ ++SG   N      L++
Sbjct: 460 YGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRI 519

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           F  M      PN  T + +L +CS    V+ G
Sbjct: 520 FNQMLAEGFNPNMYTFISILRSCSSLSDVDLG 551


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/591 (41%), Positives = 365/591 (61%), Gaps = 5/591 (0%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           ++K  HAM    VR   +TY  ++  C +  A+E+ K +H H++   +  +  +   L  
Sbjct: 214 SLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTK 273

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M++K    ++A+ +F+ +  R+V++W TMI  + D+   ++A      ML EGV P+  T
Sbjct: 274 MYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRAT 333

Query: 178 YSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           Y+ VL AC     L   +++H    K G  SDV   +ALI++Y+K G +++A  VF+ MP
Sbjct: 334 YTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP 393

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD+V W +++G +A    V E+   +K+M + G  A++ T   VL+AC+    L+ G +
Sbjct: 394 KRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKE 453

Query: 295 VHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  V+K     DL + NAL+ MY KCGS+EDA+ VF  M  +DV++W+T+I GL QNG 
Sbjct: 454 IHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGR 513

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
             EAL+ +E MK   ++PN  T V VL AC     VE+G   F  M K YGI P  +HY+
Sbjct: 514 GLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYA 573

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           CM+D+L RAG L+EA  +I  +P +P A  W ALL AC++H N ++   AA+  L L+PQ
Sbjct: 574 CMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQ 633

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           + G Y+ LS IYA +  W +VA++RK M+ RG+ KEPG SWIE+  ++H+F   D SHP+
Sbjct: 634 NAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPR 693

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
             +I   L+ L +++  +GY PDT +V+ DL+ E KE ++ +HSEKLAI +GL+S   G 
Sbjct: 694 TQEIYAELETLKKQMKSLGYVPDTRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPPGT 753

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            IRI KNLR+C DCHT  K  +K+  + I+ RD  R+HHF++G CSCGDYW
Sbjct: 754 PIRISKNLRVCTDCHTATKFISKITKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 212/386 (54%), Gaps = 9/386 (2%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G + DS  Y +L++ C+    +   K VH H+L  G +P  ++ N LL ++     + EA
Sbjct: 23  GPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEA 82

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + LFD+   ++VVSW  MIS Y    +  +A  L   M +E + P+ FT+ ++L AC S 
Sbjct: 83  RQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSP 142

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
            +L   R++H  +++ G  +D  V +ALI +YAK G +R+A  VF+ M +RD V W ++ 
Sbjct: 143 AVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLT 202

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYD 303
           G +A++   +E+L  Y  M +      + T  +VL AC  LA LE G Q+H H++  +Y 
Sbjct: 203 GAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYH 262

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D+ ++ AL  MY KCG+ +DA  VF  +  +DVI+W+TMI G   +G  +EA   F  M
Sbjct: 263 SDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRM 322

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
               + P+  T   VL AC+  G +  G   H ++ K   G+       + +I++  +AG
Sbjct: 323 LEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKD--GLVSDVRFGNALINMYSKAG 380

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLG 448
            +++A ++   MP + D V+W  LLG
Sbjct: 381 SMKDARQVFDRMP-KRDVVSWTTLLG 405



 Score =  215 bits (548), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 126/391 (32%), Positives = 210/391 (53%), Gaps = 9/391 (2%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ   +  D  T+  ++  C +   +   + +H  V+  G   +T + N L++M+ K   
Sbjct: 120 MQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGS 179

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           + +A+ +FD M  R+ VSWTT+  AY ++   +++L+    ML+E VRP+  TY  VL A
Sbjct: 180 VRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSA 239

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C SL  L   +Q+H  I++  + SDV V +AL  +Y K G  ++A  VF  +  RD++ W
Sbjct: 240 CGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAW 299

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N++I GF  +  ++EA   + RM   G A D++T T+VL AC     L  G ++H    K
Sbjct: 300 NTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAK 359

Query: 302 YD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
                D+   NAL++MY K GS++DA  VF RM ++DV+SW+T++   A      E+   
Sbjct: 360 DGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTT 419

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLL 418
           F+ M    +K N IT + VL ACS+   ++ G   H + +K   G+       + ++ + 
Sbjct: 420 FKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKA--GLLADLAVTNALMSMY 477

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            + G +++A+++   M    D VTW  L+G 
Sbjct: 478 FKCGSVEDAIRVFEGMSMR-DVVTWNTLIGG 507



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 146/288 (50%), Gaps = 8/288 (2%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           F     L  A    H M   GV  D  TY  ++  C     +   K +H      G   +
Sbjct: 306 FVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSD 365

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
               N L+NM+ K   +++A+ +FD+MP+R+VVSWTT++  Y D     ++      ML+
Sbjct: 366 VRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQ 425

Query: 169 EGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           +GV+ N  TY  VL+AC + + L   +++H  ++K G  +D+ V +AL+ +Y K G + +
Sbjct: 426 QGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVED 485

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VF  M  RD+V WN++IGG  QN    EAL  Y+ MK  G   + +T  +VL AC  
Sbjct: 486 AIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRV 545

Query: 286 LALLELGTQVHVHVLKYDHDLILNN----ALLDMYCKCGSLEDAMSVF 329
             L+E G +    + K D+ ++        ++D+  + G L +A  V 
Sbjct: 546 CNLVEEGRRQFAFMSK-DYGIVPTEKHYACMVDILARAGHLREAEDVI 592



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 99/194 (51%), Gaps = 6/194 (3%)

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMY 316
           ++ + + R G   D      +L++C     L +G QVH H+L+     ++ + N LL +Y
Sbjct: 14  DVLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLY 73

Query: 317 CKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIV 376
             CGS+ +A  +F +   K V+SW+ MISG A  G +QEA  LF  M+  R++P+  T V
Sbjct: 74  AHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFV 133

Query: 377 GVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435
            +L ACS    +  G   H + M+   G+       + +I +  + G +++A ++   M 
Sbjct: 134 SILSACSSPAVLNWGREIHVRVMEA--GLANDTTVGNALISMYAKCGSVRDARRVFDAMA 191

Query: 436 YEPDAVTWRALLGA 449
              D V+W  L GA
Sbjct: 192 SR-DEVSWTTLTGA 204


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 254/630 (40%), Positives = 386/630 (61%), Gaps = 20/630 (3%)

Query: 24  TITPPVASCNTITRNSSSLLD-DFTRFCY----------QRDLPRAMKAMHAMQCHGVRA 72
           TI  P A  +    N S + D D   FC           Q D    + A+  +Q   +  
Sbjct: 28  TIHAPAAPFSD--SNDSEVEDGDAASFCVFQDKDLLRKSQSDGGTGLYALDLIQRGSLVP 85

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF-EPETFLVNILLNMHVKFSLLEEAQVL 131
           D   Y++L+K C     VE+ ++VH H++   F +    L NI++NM+ K   L++A+ +
Sbjct: 86  DYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRM 145

Query: 132 FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS---L 188
           FD+MP +++V+WT +I+ +        AL L   MLR G +PN FT S++L+A  S   L
Sbjct: 146 FDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGL 205

Query: 189 IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
               QLH   +K G++S V+V SAL+D+YA+ G +  A+  F+ MPT+  V WN++I G 
Sbjct: 206 DPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGH 265

Query: 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI- 307
           A+  + + AL+L  +M+R  F     T +SVL AC  +  LE G  VH H++K    LI 
Sbjct: 266 ARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIA 325

Query: 308 -LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
            + N LLDMY K GS++DA  VF R+++ DV+SW+TM++G AQ+G  +E L  FE M   
Sbjct: 326 FIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRI 385

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
            I+PN I+ + VL ACSH+G +++G  +F+ MKK Y ++P   HY   +DLLGR G L  
Sbjct: 386 GIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVGLLDR 444

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           A + I EMP EP A  W ALLGAC++H+N +L + AA++   LDP D G  +LLSNIYA+
Sbjct: 445 AERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYAS 504

Query: 487 SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
           + +W +VA+VRK M+  G+ K+P CSW+E+   +H F   D +HP+I +I    + +  K
Sbjct: 505 AGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGK 564

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           +  +GY PDT++VL  ++ +++E+ +QYHSEKLA+ F L++   G  IRI+KN+R+CGDC
Sbjct: 565 IKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDC 624

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGN 636
           H   K  +K+ ++ I++RD  R+H F+DG+
Sbjct: 625 HAAIKFVSKVVDREIIVRDTNRFHRFRDGS 654


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 241/571 (42%), Positives = 367/571 (64%), Gaps = 8/571 (1%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139
           L+K C   + + E K++H  +L+  F  +  + N LLN++ K   L  A+ LFD+M  R+
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRD 80

Query: 140 VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL-----IILRQL 194
           VV+WT +I+ Y        AL LL  MLR G++PN FT +++L+A   +     +  RQL
Sbjct: 81  VVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQL 140

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
           H   ++ G++S+V+V  A++D+YA+   L  A+ +F+ M +++ V WN++I G+A+    
Sbjct: 141 HGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQG 200

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNAL 312
           D+A  L+  M R        T +SVL AC  +  LE G  VH  ++K+   L+  + N L
Sbjct: 201 DKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTL 260

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           LDMY K GS+EDA  VF R+ ++DV+SW++M++G +Q+G  + AL+ FE M  +RI PN 
Sbjct: 261 LDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPND 320

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           IT + VL ACSHAG +++G ++F  MKK Y ++P   HY  M+DLLGRAG L  A++ I 
Sbjct: 321 ITFLCVLTACSHAGLLDEGRHYFDMMKK-YNVEPQISHYVTMVDLLGRAGHLDRAIQFIS 379

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
           EMP +P A  W ALLGAC++H+N +L   AA+ I  LD   PGT++LL NIYA + +W++
Sbjct: 380 EMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWND 439

Query: 493 VAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGY 552
            A+VRK M+  G+ KEP CSW+E+  ++H F   D +HPQ  +I+   + +  K+  +GY
Sbjct: 440 AAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGY 499

Query: 553 APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
            PD+++VL  ++ +++E  +QYHSEKLA+ F L++   G TIRI+KN+RICGDCH+  K 
Sbjct: 500 VPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSAFKF 559

Query: 613 TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +K+  + I++RD  R+HHF DG CSC DYW
Sbjct: 560 VSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 14/207 (6%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V+    TY+ ++  C +  ++E+ K VH  ++  G +   F+ N LL+M+ K   +E+A+
Sbjct: 215 VKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAK 274

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            +FD++ +R+VVSW +M++ Y    +   AL+    MLR  + PN  T+  VL AC    
Sbjct: 275 KVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAG 334

Query: 190 IL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL-VVWNSII 245
           +L   R     + K   E  +     ++D+  + G L  A    +EMP +    VW +++
Sbjct: 335 LLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALL 394

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAAD 272
           G          A  ++K M+  G+AA+
Sbjct: 395 G----------ACRMHKNMELGGYAAE 411


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  497 bits (1279), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 249/590 (42%), Positives = 362/590 (61%), Gaps = 41/590 (6%)

Query: 90   VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
            +++A+L+ + +L+    P     N ++  + +  +L+EA+ LF +MP +N  SW  MI+ 
Sbjct: 474  IQKARLIFDEILN----PNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAG 529

Query: 150  YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESD 206
            +   + + +ALELLI + R G  P+  ++++ L AC ++    I R +H   IK G + +
Sbjct: 530  FVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFN 589

Query: 207  VFVRSALIDIYAKLGE-------------------------------LRNAECVFNEMPT 235
             +V + LI +YAK G                                L +A  VF +MP 
Sbjct: 590  SYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPK 649

Query: 236  RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
            RD+V W +II  + Q    + AL+L+  M   G   +Q T+TS+L AC  L  ++LG Q 
Sbjct: 650  RDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQF 709

Query: 296  HVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
            H  + K  +D  L + N+L+ MY KCG  ED   VF  M + D+I+W+ ++ G AQNG  
Sbjct: 710  HALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLG 768

Query: 354  QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
            +EA+K+FE M+V  I P+ ++ +GVL ACSHAG V++GW HF SM + YGI P   HY+C
Sbjct: 769  KEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTC 828

Query: 414  MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
            M+DLLGRAG L EA  LI  MP +PD+V W ALLGAC++HRN +L    A+++  +    
Sbjct: 829  MVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPK 888

Query: 474  PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQI 533
              TY+LLSN++A+   WD+VAE+RK M+ +G+TKEPG SWI+V  ++H F   D +H QI
Sbjct: 889  SATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQI 948

Query: 534  DKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT 593
            ++I   LK         GY PDTN+VL D+E EQK++ + YHSEKLA+VFG++S   G  
Sbjct: 949  EEIYSALKEYYGCFRATGYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGSP 1008

Query: 594  IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            I+I KNLRICGDCHTF K  +K+  + I+IRD  R+HHF+DG+CSCGDYW
Sbjct: 1009 IQIIKNLRICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 203/450 (45%), Gaps = 47/450 (10%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RNS S +   + + +  D   A      M     R D   +  ++        +E    +
Sbjct: 324 RNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSL 383

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
               +  G+E +  + + +LN + +   L+ A   F+ MPERN  SWTTMI+A+      
Sbjct: 384 RPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRL 443

Query: 157 DKALELLIFMLREGVRPN---MFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSAL 213
           D A++L   +  + V      M  Y+ V R   + +I  ++           +V   +A+
Sbjct: 444 DDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEI--------LNPNVVAWNAI 495

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           I  Y + G L+ A+ +F +MP ++   W ++I GF QN +  EAL L   + R+G     
Sbjct: 496 IAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSD 555

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSR 331
           S+ TS L AC  +  +E+G  +H   +K     +  + N L+ MY KCG++ED   VF  
Sbjct: 556 SSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRT 615

Query: 332 MIQKDVISWSTMISGLAQN-------------------------------GYSQEALKLF 360
           +  KD +SW+++ISGL++N                               G+ + AL LF
Sbjct: 616 IRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLF 675

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420
             M    IKPN +T+  +L AC + G ++ G   F ++    G D      + +I +  +
Sbjct: 676 LDMLARGIKPNQLTVTSLLSACGNLGAIKLG-EQFHALIFKLGFDTFLFVGNSLITMYFK 734

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
            G  ++   +  EMP E D +TW A+L  C
Sbjct: 735 CG-YEDGFCVFEEMP-EHDLITWNAVLVGC 762



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 187/384 (48%), Gaps = 14/384 (3%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           + EA+ LFDQMPERN VSW  MIS Y       +A ++ + M R   RP+   +  VL A
Sbjct: 311 MSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSA 370

Query: 185 C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
               D L ++  L    IK G+E DV V SA+++ Y + G L  A   F  MP R+   W
Sbjct: 371 ITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSW 430

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            ++I  FAQ   +D+A+ LY+R+     A    T T+++ A   +  ++    +   +L 
Sbjct: 431 TTMIAAFAQCGRLDDAIQLYERVPEQTVA----TKTAMMTAYAQVGRIQKARLIFDEIL- 485

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
            + +++  NA++  Y + G L++A  +F +M  K+  SW+ MI+G  QN  S+EAL+L  
Sbjct: 486 -NPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLI 544

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            +  S   P+  +    L AC++ G VE G     S+    G        + +I +  + 
Sbjct: 545 ELHRSGSVPSDSSFTSALSACANIGDVEIG-RVIHSLAIKTGCQFNSYVMNGLISMYAKC 603

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           G +++   +   +  + D V+W +L+     +   D A    +K   +  +D  ++  + 
Sbjct: 604 GNVEDGSHVFRTIRVK-DTVSWNSLISGLSENYMLDDARVVFEK---MPKRDVVSWTAII 659

Query: 482 NIYANSQKWDEVAEVRKTMRARGI 505
           + Y  +   +   ++   M ARGI
Sbjct: 660 SAYVQAGHGEVALDLFLDMLARGI 683



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 178/382 (46%), Gaps = 52/382 (13%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           ++ D V++  +I        V+EA+L+ +  +       T    ILL  + K   +EEA+
Sbjct: 198 IQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWT----ILLTGYAKEGRIEEAR 253

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            +F+ M ERNVVSW  MIS Y        A +L      E    N+ ++++V+       
Sbjct: 254 EVFESMTERNVVSWNAMISGYVQNGDLKNARKL----FDEMPEKNVASWNSVVTG----- 304

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
                HC                      ++ E R    +F++MP R+ V W  +I G+ 
Sbjct: 305 ---YCHC---------------------YRMSEARE---LFDQMPERNSVSWMVMISGYV 337

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
             SD  EA +++ +M R     DQS    VL A TGL  LEL   +    +K  Y+ D++
Sbjct: 338 HISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVV 397

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + +A+L+ Y + GSL+ AM  F  M +++  SW+TMI+  AQ G   +A++L+E +    
Sbjct: 398 VGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQT 457

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           +     T   ++ A +  G ++     F  +     ++P    ++ +I    + G L+EA
Sbjct: 458 VA----TKTAMMTAYAQVGRIQKARLIFDEI-----LNPNVVAWNAIIAGYTQNGMLKEA 508

Query: 428 VKLIHEMPYEPDAVTWRALLGA 449
             L  +MP + ++ +W A++  
Sbjct: 509 KDLFQKMPVK-NSASWAAMIAG 529



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 124/264 (46%), Gaps = 22/264 (8%)

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
           ++ +F  +  I    +LG +  A  VFNEM  RD+V WNS+I G++QN  VDEA  L+  
Sbjct: 168 QTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFD- 226

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLE 323
              A    +  T T +L        +E   +V   +   + +++  NA++  Y + G L+
Sbjct: 227 ---AFVGKNIRTWTILLTGYAKEGRIEEAREVFESMT--ERNVVSWNAMISGYVQNGDLK 281

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
           +A  +F  M +K+V SW+++++G        EA +LF+ M     + N ++ + ++    
Sbjct: 282 NARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMP----ERNSVSWMVMISGYV 337

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-------PY 436
           H     + W+ F  M +       R   S  + +L     L + ++LI  +        Y
Sbjct: 338 HISDYWEAWDVFVKMCR----TVARPDQSIFVVVLSAITGLDD-LELIGSLRPIAIKTGY 392

Query: 437 EPDAVTWRALLGACKVHRNTDLAI 460
           E D V   A+L A   + + DLA+
Sbjct: 393 EGDVVVGSAILNAYTRNGSLDLAM 416



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 99/213 (46%), Gaps = 22/213 (10%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   G++ + +T   L+  C    A++  +  H  +   GF+   F+ N L+ M+ K   
Sbjct: 678 MLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG- 736

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            E+   +F++MPE ++++W  ++       +  +A+++   M  EG+ P+  ++  VL A
Sbjct: 737 YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCA 796

Query: 185 CDSLIILRQLHCGII------------KVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           C         H G++            K G    V+  + ++D+  + G L  AE +   
Sbjct: 797 CS--------HAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIEN 848

Query: 233 MPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRM 264
           MP + D V+W +++G    + +V+    + +R+
Sbjct: 849 MPVKPDSVIWEALLGACRIHRNVELGQRVAERL 881


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/592 (40%), Positives = 379/592 (64%), Gaps = 5/592 (0%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++ +  M+  G+  +  T +  +K C      E  + +H+ ++    E + F+   L+
Sbjct: 342 QALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLV 401

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K  LLE+A++ F+ +PE+++++W  +IS Y     + +AL L + M +EG+  N  
Sbjct: 402 DMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQT 461

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T S +L++   L ++   RQ+H   +K GF SD++V ++LID Y K   + +AE +F E 
Sbjct: 462 TLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEEC 521

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
              DLV + S+I  +AQ    +EAL L+  M+      D+   +S+L AC  L+  E G 
Sbjct: 522 TIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGK 581

Query: 294 QVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+HVH+LKY    D+   N+L++MY KCGS++DA   FS + ++ ++SWS MI GLAQ+G
Sbjct: 582 QLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHG 641

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           + ++AL+LF  M    + PN+IT+V VL AC+HAG V +   +F+SM++ +G  P +EHY
Sbjct: 642 HGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHY 701

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +CMIDLLGRAGK+ EAV+L+++MP+E +A  W ALLGA ++H++ +L   AA+ +  L+P
Sbjct: 702 ACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEP 761

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
           +  GT++LL+NIYA++ KW+ VAEVR+ MR   + KEPG SWIEV  +++ F V D SH 
Sbjct: 762 EKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHY 821

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
           +  +I   L  L   +   GY P     L D+E  +KE  + +HSEKLA+ FGL++  QG
Sbjct: 822 RSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQG 881

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             IR++KNLR+C DCHT  K   K+ ++ I++RD  R+HHF+DG+CSCGDYW
Sbjct: 882 APIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 157/494 (31%), Positives = 250/494 (50%), Gaps = 51/494 (10%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+ A H M   GV+ +  T++ ++K C     +   K VH  V+  GFE + F+ N L+ 
Sbjct: 141 ALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVV 200

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K     +++ LFD++PERNVVSW  + S Y       +A+ L   M+  G++PN F+
Sbjct: 201 MYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFS 260

Query: 178 YSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            S+++ AC  L    +   +H  +IK+G++ D F  +AL+D+YAK+G+L +A  VF ++ 
Sbjct: 261 LSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK 320

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             D+V WN++I G   +   ++AL L  +MKR+G   +  TL+S L+AC G+ L ELG Q
Sbjct: 321 QPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQ 380

Query: 295 VHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  ++K D   DL ++  L+DMY KC  LEDA   F+ + +KD+I+W+ +ISG +Q   
Sbjct: 381 LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWE 440

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACS-----------HAGFVEDGWNH----FKS 397
             EAL LF  M    I  N  T+  +L + +           H   V+ G++       S
Sbjct: 441 DMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNS 500

Query: 398 MKKFYGI-----DPGREHYSC----------MIDLLGRAGKLQEAVKL---IHEMPYEPD 439
           +   YG      D  R    C          MI    + G+ +EA+KL   + +M  +PD
Sbjct: 501 LIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPD 560

Query: 440 AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL-------LSNIYANSQKWDE 492
                +LL AC      +L+     K L++     G ++L       L N+YA     D+
Sbjct: 561 RFVCSSLLNAC-----ANLSAFEQGKQLHVHILKYG-FVLDIFAGNSLVNMYAKCGSIDD 614

Query: 493 VAEVRKTMRARGIT 506
                  +  RGI 
Sbjct: 615 AGRAFSELTERGIV 628



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/383 (32%), Positives = 210/383 (54%), Gaps = 11/383 (2%)

Query: 74  SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFD 133
           SV+Y++L+  C    ++     +H H+   G   +  + N L+N++ K      A+ L D
Sbjct: 56  SVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVD 115

Query: 134 QMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLII 190
           +  E ++VSW+ +IS Y    +   AL     M   GV+ N FT+S+VL+AC     L I
Sbjct: 116 ESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRI 175

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
            +Q+H  ++  GFE DVFV + L+ +YAK  E  +++ +F+E+P R++V WN++   + Q
Sbjct: 176 GKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQ 235

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
                EA+ L+  M  +G   ++ +L+S++ ACTGL     G  +H +++K  YD D   
Sbjct: 236 IDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFS 295

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            NAL+DMY K G L DA+SVF ++ Q D++SW+ +I+G   + + ++AL+L   MK S I
Sbjct: 296 ANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGI 355

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC--MIDLLGRAGKLQE 426
            PN  T+   L AC+  G  E G     S+ K   +D   + +    ++D+  +   L++
Sbjct: 356 CPNIFTLSSALKACAGMGLKELGRQLHSSLMK---MDMESDLFVSVGLVDMYSKCDLLED 412

Query: 427 AVKLIHEMPYEPDAVTWRALLGA 449
           A    + +P E D + W A++  
Sbjct: 413 ARMAFNLLP-EKDLIAWNAIISG 434



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 156/298 (52%), Gaps = 17/298 (5%)

Query: 173 PNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P   +YS +L  C +   LR   Q+H  I K G   D  +R+ LI++Y+K      A  +
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKL 113

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
            +E    DLV W+++I G+AQN     AL  +  M   G   ++ T +SVL+AC+ +  L
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDL 173

Query: 290 ELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
            +G QVH  V V  ++ D+ + N L+ MY KC    D+  +F  + +++V+SW+ + S  
Sbjct: 174 RIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCY 233

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC-----SHAGFVEDGWNHFKSMKKFY 402
            Q  +  EA+ LF  M +S IKPN  ++  ++ AC     S  G +  G+     +K  Y
Sbjct: 234 VQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGY----LIKLGY 289

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
             DP     + ++D+  + G L +A+ +  ++  +PD V+W A++  C +H + + A+
Sbjct: 290 DWDPFSA--NALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQAL 344



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 20/214 (9%)

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHD 305
           F+Q+      LNL   + +  F     + + +L  C     L  G Q+H H+ K     D
Sbjct: 34  FSQDPQTTAILNL---IDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDD 90

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
             + N L+++Y KC +   A  +     + D++SWS +ISG AQNG    AL  F  M +
Sbjct: 91  PSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHL 150

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG--IDPGREH----YSCMIDLLG 419
             +K N  T   VL ACS    V+D     +  K+ +G  +  G E      + ++ +  
Sbjct: 151 LGVKCNEFTFSSVLKACS---IVKD----LRIGKQVHGVVVVSGFEGDVFVANTLVVMYA 203

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           +  +  ++ +L  E+P E + V+W AL  +C V 
Sbjct: 204 KCDEFLDSKRLFDEIP-ERNVVSWNALF-SCYVQ 235


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/594 (40%), Positives = 375/594 (63%), Gaps = 7/594 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           R  +A+  M   G+  +   Y  ++  CL + A+ E + VH H++   + P  +L   L+
Sbjct: 41  RLREALLHMALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLI 100

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
             +VK   L +A+ +FD MPERNVVSWT MISAY       +AL L + MLR G  PN F
Sbjct: 101 VFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEF 160

Query: 177 TYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T++ VL +C      ++ RQ+H  IIK+ +E+ V+V S+L+D+YAK G++  A  +F  +
Sbjct: 161 TFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCL 220

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           P RD+V   +II G+AQ    +EAL L++R++R G  ++  T TSVL A +GLA L+ G 
Sbjct: 221 PERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGK 280

Query: 294 QVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           QVH H+L+ +    ++L N+L+DMY KCG+L  A  +F  + ++ VISW+ M+ G +++G
Sbjct: 281 QVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHG 340

Query: 352 YSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF-YGIDPGRE 409
             +E L+LF  M   +++KP+ +T++ VL  CSH G  + G + F  M      + P  +
Sbjct: 341 EGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSK 400

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
           HY C++D+LGRAG+++ A + + +MP+EP A  W  LLGAC VH N D+      ++L +
Sbjct: 401 HYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQI 460

Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
           +P++ G Y++LSN+YA++ +W++V  +R  M  + +TKEPG SWIE+++ +H F+ +D S
Sbjct: 461 EPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCS 520

Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
           HP+ ++++  ++ L  +    GY PD + VL D++ EQKE  +  HSEKLA+ FGL++  
Sbjct: 521 HPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSEKLALTFGLIATP 580

Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +   IR+ KNLRIC DCH FAK T+K+  + + +RD  R+H    G CSCGDYW
Sbjct: 581 ESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/514 (47%), Positives = 340/514 (66%), Gaps = 36/514 (7%)

Query: 166 MLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           M+ +GV+PN FT S V++AC S+  L   +Q H  IIK+GFESDV V++AL+ +YA+ G 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 223 LRNAECVFN-------------------------------EMPTRDLVVWNSIIGGFAQN 251
           L +A  VF+                               EM  RD+V W ++I G+AQN
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILN 309
              DE+LN++ +M++ G  +D+  + SVL AC  LA LELG Q H +V++  +  D+++ 
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
           +AL+DMY K GS+EDA  VF +M Q++ +SW+++I+G AQ+G   +A+ LFE M  + IK
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIK 240

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           PN I+ VGVL ACSH G V +G  +F  M + YGI P   HY+CMIDLLGRAG L EA  
Sbjct: 241 PNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAEN 300

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489
            I+ MP EPD   W ALLGAC++H NT+LA   A+ +L ++ Q  G Y+LLSNIYA + +
Sbjct: 301 FINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQ 360

Query: 490 WDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549
           WD+ A+VRK M+ RG+ K+PG SWIEV   +HAF   ++SHPQ+ +I++ L+ L +K+  
Sbjct: 361 WDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKA 420

Query: 550 VGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
            GY P+ N+VLQD+E ++KE S+ +HSEKLAI FG+++   G TIR+ KNLR+CGDCHT 
Sbjct: 421 AGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHTV 480

Query: 610 AKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            K  +    + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 481 IKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 177/338 (52%), Gaps = 40/338 (11%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   GV+ +  T + ++K C +  ++E+ K  HN+++  GFE +  +   L++M+ +   
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 125 LEEAQVLFD-------------------------------QMPERNVVSWTTMISAYCDA 153
           LE+A  +FD                               +M ER+VVSWT +I+ Y   
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVR 210
              D++L +   M + G++ + F   +VL AC  L  L   RQ H  +++ GF  D+ V 
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
           SAL+D+YAK G + +A  VF++MP R+ V WNSII G AQ+   ++A+ L+++M +AG  
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIK 240

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAM 326
            ++ +   VL AC+   L+  G + + +++  ++ ++ +      ++D+  + G L++A 
Sbjct: 241 PNEISFVGVLSACSHTGLVNEG-RGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAE 299

Query: 327 SVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESM 363
           +  + M ++ DV  W  ++     +G ++ A ++ E +
Sbjct: 300 NFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHL 337



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 98/195 (50%), Gaps = 5/195 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            ++   + M+  G+++D      ++  C    A+E  +  H +V+  GF  +  + + L+
Sbjct: 125 ESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALV 184

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   +E+A  +FD+MP+RN VSW ++I+        + A+ L   ML+ G++PN  
Sbjct: 185 DMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEI 244

Query: 177 TYSAVLRACDSLIILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           ++  VL AC    ++ +     +      G   DV   + +ID+  + G L  AE   N 
Sbjct: 245 SFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFING 304

Query: 233 MPTR-DLVVWNSIIG 246
           MP   D+ VW +++G
Sbjct: 305 MPVEPDVSVWGALLG 319


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/591 (40%), Positives = 367/591 (62%), Gaps = 5/591 (0%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A +  + MQ  GV  + +TY  L+  C+   A+   K +H+ V   GF  +  + N L++
Sbjct: 312 ASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALIS 371

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ +   +++A+++FD+M  ++V+SWT MI     +    +AL +   M + GV PN  T
Sbjct: 372 MYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVT 431

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           Y+++L AC S   L   R++H  +++ G  +D  V + L+++Y+  G +++A  VF+ M 
Sbjct: 432 YTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMI 491

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD+V +N++IGG+A ++   EAL L+ R++  G   D+ T  ++L AC     LE   +
Sbjct: 492 QRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWARE 551

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  V K  +  D  + NAL+  Y KCGS  DA  VF +M +++VISW+ +I G AQ+G 
Sbjct: 552 IHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGR 611

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            Q+AL+LFE MK+  +KP+ +T V +L ACSHAG +E+G  +F SM + + I P  EHY 
Sbjct: 612 GQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYG 671

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           CM+DLLGRAG+L EA  LI  MP++ +   W ALLGAC++H N  +A  AA+  L LD  
Sbjct: 672 CMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLD 731

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           +   Y+ LS++YA +  WD  A++RK M  RG+TKEPG SWI+V  ++H F   D SHPQ
Sbjct: 732 NAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQ 791

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
            +KI   L  L   +   GY PDT  V+ D++  +KE+++ +HSE+LAI +GL+S   G 
Sbjct: 792 SEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTPPGT 851

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            I I KNLR+C DCHT  K  +K+ ++ I+ RD  R+HHF+DG CSCGDYW
Sbjct: 852 RIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNRFHHFKDGVCSCGDYW 902



 Score =  258 bits (658), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 149/458 (32%), Positives = 248/458 (54%), Gaps = 10/458 (2%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           + +A+K +  MQ HG+  D  T    +  C +  A+E  + +H   +  G   +  + N 
Sbjct: 107 IEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANC 166

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           +LNM+ K   +EEA+ +FD+M +++VVSWT  I  Y D   ++ A E+   M +EGV PN
Sbjct: 167 ILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPN 226

Query: 175 MFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
             TY +VL A  S   L   + +H  I+  G ESD  V +AL+ +YAK G  ++   VF 
Sbjct: 227 RITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFE 286

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           ++  RDL+ WN++IGG A+    +EA  +Y +M+R G   ++ T   +L AC   A L  
Sbjct: 287 KLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHW 346

Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G ++H  V K  +  D+ + NAL+ MY +CGS++DA  VF +M++KDVISW+ MI GLA+
Sbjct: 347 GKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAK 406

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           +G+  EAL +++ M+ + ++PN +T   +L ACS    +E G    + + +  G+     
Sbjct: 407 SGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVE-AGLATDAH 465

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL-- 467
             + ++++    G +++A ++   M  + D V + A++G    H     A+    ++   
Sbjct: 466 VGNTLVNMYSMCGSVKDARQVFDRM-IQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEE 524

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
            L P D  TYI + N  ANS   +   E+   +R  G 
Sbjct: 525 GLKP-DKVTYINMLNACANSGSLEWAREIHTLVRKGGF 561



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 122/400 (30%), Positives = 219/400 (54%), Gaps = 11/400 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+  +  +Q  G + +S  Y +++K C+    +   + VH H++     P+ + VN L+N
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 118 MHVKFSLLEEAQVLFDQMP--ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
           M+++   +EEA+ ++ ++   ER V SW  M+  Y      +KAL+LL  M + G+ P+ 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 176 FTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
            T  + L +C S   L   R++H   ++ G   DV V + ++++YAK G +  A  VF++
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           M  + +V W   IGG+A     + A  ++++M++ G   ++ T  SVL A +  A L+ G
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWG 246

Query: 293 TQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
             VH  +L   H  D  +  AL+ MY KCGS +D   VF +++ +D+I+W+TMI GLA+ 
Sbjct: 247 KAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 306

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGRE 409
           GY +EA +++  M+   + PN IT V +L AC ++  +  G   H +  K  +  D G +
Sbjct: 307 GYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQ 366

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
             + +I +  R G +++A +L+ +     D ++W A++G 
Sbjct: 367 --NALISMYSRCGSIKDA-RLVFDKMVRKDVISWTAMIGG 403



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 111/200 (55%), Gaps = 8/200 (4%)

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNAL 312
           D A+++ + +++ G   + S    +L+ C  +  L  G QVH H++++    D    NAL
Sbjct: 5   DGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNAL 64

Query: 313 LDMYCKCGSLEDAMSVFSRM--IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           ++MY +CGS+E+A  V+ ++  +++ V SW+ M+ G  Q GY ++ALKL   M+   + P
Sbjct: 65  INMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAP 124

Query: 371 NYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           +  TI+  L +C   G +E G   HF++M+     D   +  +C++++  + G ++EA +
Sbjct: 125 DRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDV--KVANCILNMYAKCGSIEEARE 182

Query: 430 LIHEMPYEPDAVTWRALLGA 449
           +  +M  +   V+W   +G 
Sbjct: 183 VFDKME-KKSVVSWTITIGG 201


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 250/595 (42%), Positives = 372/595 (62%), Gaps = 8/595 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+K    MQ  G++ +  T+A ++    A  AVE+   VH  V+  G +   F+ N ++
Sbjct: 176 QALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMV 235

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           NM+ K  ++ +A+ +FD M  RN VSW +MI+ +    ++ +A EL   M  EGV+    
Sbjct: 236 NMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQT 295

Query: 177 TYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
            ++ V++ C     +   +QLHC +IK G + D+ +++AL+  Y+K  E+ +A  +F  M
Sbjct: 296 IFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMM 355

Query: 234 -PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA-GFAADQSTLTSVLRACTG-LALLE 290
              +++V W +II G+ QN   D A+NL+ +M+R  G   ++ T +SVL AC    A +E
Sbjct: 356 HGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVE 415

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G Q H   +K  + + L +++AL+ MY K G++E A  VF R + +D++SW++MISG A
Sbjct: 416 QGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYA 475

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           Q+G  +++LK+FE M+   ++ + IT +GV+ AC+HAG V +G  +F  M K Y I P  
Sbjct: 476 QHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTM 535

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           EHYSCM+DL  RAG L++A+ LI++MP+   A  WR LL AC+VH N  L   AA+K+++
Sbjct: 536 EHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLIS 595

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           L PQD   Y+LLSNIYA +  W E A+VRK M  + + KE G SWIEV  +  +F   D 
Sbjct: 596 LQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDL 655

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
           SHPQ D+I   L+ L  +L   GY PDT YVL D+E E KE  +  HSE+LAI FGL++ 
Sbjct: 656 SHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIAT 715

Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             G  I+I KNLR+CGDCHT  KL +K+E + IV+RD  R+HHF+ G+CSCGDYW
Sbjct: 716 PPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 770



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/426 (29%), Positives = 222/426 (52%), Gaps = 12/426 (2%)

Query: 35  ITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAK 94
           ++RN+  LL +F+R    ++   A+     ++  G   D  + + ++K C         K
Sbjct: 57  LSRNNH-LLFEFSRNDQNKE---ALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGK 112

Query: 95  LVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK 154
            VH   +  GF  +  +   L++M++K   +E+ + +FD+M  +NVVSWT++++ Y    
Sbjct: 113 QVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNG 172

Query: 155 MNDKALELLIFMLREGVRPNMFTYSAVLR--ACDSLIILR-QLHCGIIKVGFESDVFVRS 211
           +N++AL+L   M  EG++PN FT++AVL   A D  +    Q+H  +IK G +S +FV +
Sbjct: 173 LNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGN 232

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
           +++++Y+K   + +A+ VF+ M  R+ V WNS+I GF  N    EA  L+ RM+  G   
Sbjct: 233 SMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKL 292

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVF 329
            Q+   +V++ C  +  +    Q+H  V+K   D DL +  AL+  Y KC  ++DA  +F
Sbjct: 293 TQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLF 352

Query: 330 SRMIQ-KDVISWSTMISGLAQNGYSQEALKLFESMKVSR-IKPNYITIVGVLFACSHAGF 387
             M   ++V+SW+ +ISG  QNG +  A+ LF  M+    ++PN  T   VL AC+    
Sbjct: 353 CMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTA 412

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
             +    F S     G        S ++ +  + G ++ A + + +   + D V+W +++
Sbjct: 413 SVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANE-VFKRQVDRDLVSWNSMI 471

Query: 448 GACKVH 453
                H
Sbjct: 472 SGYAQH 477



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 179/355 (50%), Gaps = 11/355 (3%)

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           +Q LFD+ P++ +     ++  +     N +AL L + + R G   +  + S VL+ C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 188 L---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L   I+ +Q+HC  IK GF  DV V ++L+D+Y K   + + E VF+EM  +++V W S+
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           + G+ QN   ++AL L+ +M+  G   +  T  +VL        +E G QVH  V+K   
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           D  + + N++++MY K   + DA +VF  M  ++ +SW++MI+G   NG   EA +LF  
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRA 421
           M++  +K        V+  C++   +      H + +K   G D      + ++    + 
Sbjct: 285 MRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKN--GSDFDLNIKTALMVAYSKC 342

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI---CAAKKILNLDPQD 473
            ++ +A KL   M    + V+W A++     +  TD A+   C  ++   ++P +
Sbjct: 343 SEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNE 397


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/576 (41%), Positives = 363/576 (63%), Gaps = 7/576 (1%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D  T   L+  C+        K +H+ V+  G   + F+   L++M+ K + +E ++ +F
Sbjct: 247 DKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIF 306

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI--- 189
           + M   NV+SWT +IS Y  ++   +A++L   ML   V PN FT+S+VL+AC SL    
Sbjct: 307 NTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFG 366

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           I +QLH   IK+G  +   V ++LI++YA+ G +  A   FN +  ++L+ +N+     A
Sbjct: 367 IGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANA 426

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           +  D DE+ N    ++  G  A   T   +L     +  +  G Q+H  ++K  +  +L 
Sbjct: 427 KALDSDESFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLC 484

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           +NNAL+ MY KCG+ E A+ VF+ M  ++VI+W+++ISG A++G++ +AL+LF  M    
Sbjct: 485 INNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIG 544

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           +KPN +T + VL ACSH G +++ W HF SM   + I P  EHY+CM+DLLGR+G L EA
Sbjct: 545 VKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEA 604

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487
           ++ I+ MP++ DA+ WR  LG+C+VHRNT L   AAKKIL  +P DP TYILLSN+YA+ 
Sbjct: 605 IEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASE 664

Query: 488 QKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL 547
            +WD+VA +RK+M+ + + KE G SWIEV+ Q+H F+V D+SHPQ  KI   L  L  K+
Sbjct: 665 GRWDDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKI 724

Query: 548 VGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCH 607
             +GY P+T++VL D+E EQKE  +  HSEK+A+ + L+S  + K IR+ KNLR+CGDCH
Sbjct: 725 KNLGYIPNTDFVLHDVEDEQKEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCH 784

Query: 608 TFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           T  K  + +  + IV+RD  R+HH +DG CSC DYW
Sbjct: 785 TAIKYISIVTGREIVVRDANRFHHIKDGKCSCNDYW 820



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/382 (30%), Positives = 211/382 (55%), Gaps = 26/382 (6%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP--E 137
           L+K C+    +E  KL+H+ ++  G   ++ L+N L+ ++ K    E A  +F  M   +
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFML---REGVRPNMFTYSAVLRACDSLIILRQ- 193
           R++VSW+ +IS + +  M  +AL   + ML   R  + PN + ++A+LR+C + +     
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTG 164

Query: 194 --LHCGIIKVG-FESDVFVRSALIDIYAKLG-ELRNAECVFNEMPTRDLVVWNSIIGGFA 249
             +   ++K G F+S V V  ALID++ K G ++++A  VF++M  ++LV W  +I  ++
Sbjct: 165 LAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYS 224

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLI 307
           Q   +D+A++L+ R+  + +  D+ TLTS+L AC  L    LG Q+H  V++     D+ 
Sbjct: 225 QLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVF 284

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           +   L+DMY K  ++E++  +F+ M+  +V+SW+ +ISG  Q+   QEA+KLF +M    
Sbjct: 285 VGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGH 344

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG--IDPGREHYSC----MIDLLGRA 421
           + PN  T   VL AC+           F   K+ +G  I  G    +C    +I++  R+
Sbjct: 345 VTPNCFTFSSVLKACA-------SLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARS 397

Query: 422 GKLQEAVKLIHEMPYEPDAVTW 443
           G ++ A K  + + +E + +++
Sbjct: 398 GTMECARKAFNIL-FEKNLISY 418



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 144/286 (50%), Gaps = 12/286 (4%)

Query: 68  HG-VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLE 126
           HG V  +  T++ ++K C +       K +H   +  G      + N L+NM+ +   +E
Sbjct: 342 HGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTME 401

Query: 127 EAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR--A 184
            A+  F+ + E+N++S+ T   A   A  +D++    +     G  P  FTY+ +L   A
Sbjct: 402 CARKAFNILFEKNLISYNTAADANAKALDSDESFNHEVEHTGVGASP--FTYACLLSGAA 459

Query: 185 CDSLIIL-RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
           C   I+   Q+H  I+K GF +++ + +ALI +Y+K G    A  VFN+M  R+++ W S
Sbjct: 460 CIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTS 519

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD 303
           II GFA++    +AL L+  M   G   ++ T  +VL AC+ + L++   + H + + Y+
Sbjct: 520 IISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWK-HFNSMHYN 578

Query: 304 HDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMI 344
           H +         ++D+  + G L +A+   + M    D + W T +
Sbjct: 579 HSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFL 624



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 5/189 (2%)

Query: 63  HAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF 122
           H ++  GV A   TYA L+        + + + +H  ++  GF     + N L++M+ K 
Sbjct: 437 HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKC 496

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
              E A  +F+ M  RNV++WT++IS +       KALEL   ML  GV+PN  TY AVL
Sbjct: 497 GNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVL 556

Query: 183 RACDSLIILRQLHCGIIKVGFESDVFVR----SALIDIYAKLGELRNAECVFNEMP-TRD 237
            AC  + ++ +       + +   +  R    + ++D+  + G L  A    N MP   D
Sbjct: 557 SACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDAD 616

Query: 238 LVVWNSIIG 246
            +VW + +G
Sbjct: 617 ALVWRTFLG 625


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/600 (39%), Positives = 376/600 (62%), Gaps = 3/600 (0%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           T +    D  +A++    M   GV  +  T+  ++  C +  A    + VH  ++  GF 
Sbjct: 238 TGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFG 297

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
              ++ + L++M+ K   L+ A+ + + M + +VVSW +++  +    + ++AL L   M
Sbjct: 298 SNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNM 357

Query: 167 LREGVRPNMFTYSAVLRACD-SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
               ++ + +T+ +VL  C    I  + +H  IIK GFE+   V +AL+D+YAK G++  
Sbjct: 358 HGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDC 417

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VF +M  +D++ W S++ G+AQN+  +E+L ++  M+  G   DQ  + S+L AC  
Sbjct: 418 AYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAE 477

Query: 286 LALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L LLE G QVH+  +K        + N+L+ MY KCG L+DA ++F  M  KDVI+W+ +
Sbjct: 478 LTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAI 537

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           I G AQNG  + +LK +++M  S  +P++IT +G+LFACSHAG V++G  +F+ M K YG
Sbjct: 538 IVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYG 597

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           I PG EHY+CMIDL GR+GKL EA +L+ +M  +PDA  W++LL AC+VH N +LA  AA
Sbjct: 598 IKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAA 657

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
             +  L+P +   Y++LSN+Y+ S+KW++VA++RK M+++GI KEPGCSW+E+N +++ F
Sbjct: 658 TNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTF 717

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
              D  HP+  +I   +  +I ++   GY PD ++ L D++ E KE  + YHSEKLA+ F
Sbjct: 718 ISDDRGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAF 777

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GL++      IRI KNLR+CGDCH+  K  +++  + I++RD   +HHF++G CSCGDYW
Sbjct: 778 GLLAAPPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 127/399 (31%), Positives = 223/399 (55%), Gaps = 13/399 (3%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A     +M+  G +A   T   +++ C +   ++  +++H  V+  GFE   F+V  L+
Sbjct: 145 EAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLV 204

Query: 117 NMHVKFSLLEEAQVLFD--QMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           +M+ K   + EA+ LF   +   +N V WT M++ Y       KA+E   +M  +GV  N
Sbjct: 205 DMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECN 264

Query: 175 MFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
            +T+  +L AC S++      Q+H  I+K GF S+V+V+SAL+D+YAK G+L+NA+ +  
Sbjct: 265 QYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLE 324

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
            M   D+V WNS++ GF ++   +EAL L+K M       D  T  SVL  C   ++   
Sbjct: 325 TMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINP- 383

Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
              VH  ++K  +++  +++NAL+DMY K G ++ A +VF +M++KDVISW+++++G AQ
Sbjct: 384 -KSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQ 442

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGR 408
           N   +E+LK+F  M+V+ + P+   +  +L AC+    +E G   H   +K   G+   +
Sbjct: 443 NNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKS--GLRWSQ 500

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
             Y+ ++ +  + G L +A  +   M  + D +TW A++
Sbjct: 501 SVYNSLVAMYAKCGCLDDADAIFVSMQVK-DVITWTAII 538



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 194/393 (49%), Gaps = 54/393 (13%)

Query: 99  HVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTM------------ 146
           H  +       +  N LLN   K   + +A+ LFD+MP+++  SW TM            
Sbjct: 55  HTTTAASYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVE 114

Query: 147 -------------------ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
                              IS YC      +A +L   M  EG + + FT  +VLR C S
Sbjct: 115 ARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSS 174

Query: 188 LIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN--EMPTRDLVVWN 242
           L +++    +H  ++K GFE +VFV + L+D+YAK   +  AE +F   E   ++ V+W 
Sbjct: 175 LGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWT 234

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK- 301
           +++ G+AQN D  +A+  ++ M   G   +Q T  ++L AC+ +     G QVH  ++K 
Sbjct: 235 AMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKS 294

Query: 302 -YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
            +  ++ + +AL+DMY KCG L++A ++   M   DV+SW++++ G  ++G  +EAL+LF
Sbjct: 295 GFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLF 354

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG--IDPGREHY----SCM 414
           ++M    +K +  T   VL  C              + K  +G  I  G E+Y    + +
Sbjct: 355 KNMHGRNMKIDDYTFPSVLNCCVVGSI---------NPKSVHGLIIKTGFENYKLVSNAL 405

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           +D+  + G +  A  +  +M  E D ++W +L+
Sbjct: 406 VDMYAKTGDMDCAYTVFEKM-LEKDVISWTSLV 437



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 77/201 (38%), Gaps = 44/201 (21%)

Query: 283 CTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
           C  +A L     +H         +   N LL+   K G + DA  +F +M QKD  SW+T
Sbjct: 45  CKFMAFLR---SIHTTTAASYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNT 101

Query: 343 MIS-------------------------------GLAQNGYSQEALKLFESMKVSRIKPN 371
           MIS                               G  + G   EA  LF SM++   K +
Sbjct: 102 MISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKAS 161

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH----YSCMIDLLGRAGKLQEA 427
             T+  VL  CS  G ++ G      M   + +  G E      + ++D+  +   + EA
Sbjct: 162 QFTLGSVLRVCSSLGLIQTG-----EMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEA 216

Query: 428 VKLIHEMPYE-PDAVTWRALL 447
             L   + ++  + V W A++
Sbjct: 217 EFLFKGLEFDRKNHVLWTAMV 237


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 248/632 (39%), Positives = 376/632 (59%), Gaps = 41/632 (6%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
            C Q  L  A++ +H +     +  +  Y+ LI+ C+    +++ K VH H+   GF P 
Sbjct: 49  LCQQNRLKEALQILHQID----KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPG 104

Query: 109 TFLVNILLNMHVK-------------------------------FSLLEEAQVLFDQMPE 137
            F++N LL M+ K                                 LL+EA+ LFD+MPE
Sbjct: 105 LFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPE 164

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLR-EGVRPNMFTYSAVLRACDSLIILR---Q 193
           R+  SWT MIS Y      ++ALEL   M R +  + N FT S+ L A  ++  LR   +
Sbjct: 165 RDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKE 224

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H  I++ G +SD  V SAL D+Y K G +  A  +F++M  RD+V W ++I  + Q+  
Sbjct: 225 IHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGR 284

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNA 311
             E  +L+  + R+G   ++ T + VL AC      ELG +VH ++ +  +D      +A
Sbjct: 285 RKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASA 344

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+ MY KCG++  A  VF    Q D+ SW+++I+G AQNG   EA++ FE +  S  +P+
Sbjct: 345 LVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPD 404

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
           +IT VGVL AC+HAG V+ G ++F S+K+ YG+    +HY+C+IDLL R+G+  EA  +I
Sbjct: 405 HITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENII 464

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
            +M  +PD   W +LLG C++H N  LA  AA+ +  ++P++P TY+ L+NIYA +  W 
Sbjct: 465 SKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWS 524

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
           EVA++RKTM  RG+ K+PG SWI + + +H F V D SHP+  +IN+ L  L +++   G
Sbjct: 525 EVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEG 584

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           + PDTN+VL D+E EQKE ++ YHSEKLA+ FG++S  +G  I++ KNLR C DCHT  K
Sbjct: 585 FVPDTNFVLHDVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHTAIK 644

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             +K+ N+ I++RD  R+H F+DG+CSC DYW
Sbjct: 645 FISKITNRKIIVRDSNRFHFFEDGHCSCRDYW 676


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 256/584 (43%), Positives = 356/584 (60%), Gaps = 6/584 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  G   DS TY  L+   ++  A E  K VH H +  G   +  + +  ++M+++   
Sbjct: 326 MQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGS 385

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +++AQ++FD++  RNV +W  MI      K   +AL L + M REG  P+  T+  +L A
Sbjct: 386 IDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA 445

Query: 185 C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
               ++L  ++++H   I  G   D+ V +AL+ +YAK G    A+ VF++M  R++  W
Sbjct: 446 NVGEEALEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTW 504

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
             +I G AQ+    EA +L+ +M R G   D +T  S+L AC     LE   +VH H + 
Sbjct: 505 TVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVN 564

Query: 302 YD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
                DL + NAL+ MY KCGS++DA  VF  M+++DV SW+ MI GLAQ+G   +AL L
Sbjct: 565 AGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDL 624

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F  MK+   KPN  + V VL ACSHAG V++G   F S+ + YGI+P  EHY+CM+DLLG
Sbjct: 625 FVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLG 684

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           RAG+L+EA   I  MP EP    W ALLGAC  + N ++A  AAK+ L L P+   TY+L
Sbjct: 685 RAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVL 744

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LSNIYA +  W++   VR  M+ RGI KEPG SWIEV+ QIH+F V D+SHP+  +I   
Sbjct: 745 LSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAK 804

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
           LK LI++L   GY PDT  VL++ + E KE ++  HSEKLAIV+GLM       IR+ KN
Sbjct: 805 LKDLIKRLKAEGYVPDTRLVLRNTDQEYKEQALCSHSEKLAIVYGLMHTPYRNPIRVYKN 864

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           LR+C DCHT  K  +K+  + IV RD  R+HHF+DG CSCGDYW
Sbjct: 865 LRVCSDCHTATKFISKVTGREIVARDAKRFHHFKDGVCSCGDYW 908



 Score =  228 bits (581), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 137/418 (32%), Positives = 218/418 (52%), Gaps = 18/418 (4%)

Query: 42  LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL 101
           ++  +  + Y  D   AMK    M+  G + + +TY  ++K C +  +++  K +H H++
Sbjct: 1   MIGGYAEYGYAED---AMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHII 57

Query: 102 SGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALE 161
             GF+ +  +   L+NM+VK   +++AQ++FD+M ERNV+SWT MI          +A  
Sbjct: 58  QSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFH 117

Query: 162 LLIFMLREGVRPNMFTYSAVLRA---CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA 218
             + M REG  PN +TY ++L A     +L  ++++H   +  G   D+ V +AL+ +YA
Sbjct: 118 RFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYA 177

Query: 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278
           K G + +A  VF+ M  RD+  W  +IGG AQ+    EA +L+ +M+R G   + +T  S
Sbjct: 178 KSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLS 237

Query: 279 VLRAC--TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
           +L A   T    LE   +VH H  K  +  DL + NAL+ MY KCGS++DA  VF  M  
Sbjct: 238 ILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCD 297

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
           +DVISW+ MI GLAQNG   EA  +F  M+     P+  T + +L      G     W  
Sbjct: 298 RDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTG----AWEW 353

Query: 395 FKSMKKF---YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            K + K     G+       S  + +  R G + +A +LI +     +  TW A++G 
Sbjct: 354 VKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDA-QLIFDKLAVRNVTTWNAMIGG 410


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/587 (40%), Positives = 370/587 (63%), Gaps = 12/587 (2%)

Query: 69  GVRADSVTYAELIKCCL--ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLE 126
           G+R D  +   ++  CL      +E  K VH   +  G + +  + N L+NM+ K     
Sbjct: 279 GLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAY 338

Query: 127 EAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL---- 182
            A+ +F+ M   +++SW +MIS+   + + ++++ L I +L EG++P+ FT +++     
Sbjct: 339 FAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATA 398

Query: 183 -RACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
            +AC  L++L   +Q+H   IK GF+SD+ V S ++D+Y K G++ NA  VFN +   D 
Sbjct: 399 AKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDD 458

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           V W S+I G   N + D+AL +Y RM+++    D+ T  ++++A + +  LE G Q+H +
Sbjct: 459 VAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHAN 518

Query: 299 VLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           V+K D   D  +  +L+DMY KCG++EDA  +F +M  +++  W+ M+ GLAQ+G ++EA
Sbjct: 519 VIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEA 578

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           + LF+SMK   I+P+ ++ +G+L ACSHAG   + + +  SM   YGI+P  EHYSC++D
Sbjct: 579 VNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVD 638

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476
            LGRAG +QEA K+I  MP++  A   RALLGAC++  + +     A ++  L+P D   
Sbjct: 639 ALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAA 698

Query: 477 YILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKI 536
           Y+LLSNIYA + +WD+V + RK M+ + + K+PG SWI+V   +H F V D SHPQ D I
Sbjct: 699 YVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADII 758

Query: 537 NKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRI 596
              ++ +++ +   GY PDT +VL D+E E+KE S+ YHSEKLAI +GL+S     TIR+
Sbjct: 759 YDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRV 818

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KNLR+CGDCH   K  +K+  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 819 IKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 201/399 (50%), Gaps = 21/399 (5%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139
           L++  ++ H +   K  H  ++  G   + FL N LL M+ K   L  A+ +FD  PER+
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142

Query: 140 VVSWTTMISAYC---DAKMNDKALELLIF-MLREGV-RPNMFTYSAVLRAC---DSLIIL 191
           +V+W  ++ AY    D+   +    L +F +LR  +      T + VL+ C     L   
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 202

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
             +H   IK+G E DVFV  AL++IY+K G +R+A  +F+ M  RD+V+WN ++ G+ Q 
Sbjct: 203 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 262

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRAC--TGLALLELGTQVHVHVLK--YDHDLI 307
               EA  L+    R+G   D+ ++  +L  C   G   LELG QVH   +K   D D+ 
Sbjct: 263 GLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVS 322

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + N+L++MY K G    A  VF+ M   D+ISW++MIS  AQ+   +E++ LF  +    
Sbjct: 323 VANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEG 382

Query: 368 IKPNYITIVGVLF-----ACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRA 421
           +KP++ T+  +       AC     ++ G   H  ++K   G D      S ++D+  + 
Sbjct: 383 LKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKA--GFDSDLHVNSGILDMYIKC 440

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           G +  A  ++      PD V W +++  C  + N D A+
Sbjct: 441 GDMVNA-GIVFNYISAPDDVAWTSMISGCVDNGNEDQAL 478



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 97/213 (45%), Gaps = 5/213 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++  H M+   V  D  T+A LIK      A+E+ + +H +V+      + F+   L+
Sbjct: 476 QALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLV 535

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   +E+A  LF +M  RN+  W  M+         ++A+ L   M   G+ P+  
Sbjct: 536 DMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRV 595

Query: 177 TYSAVLRACDSLIILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           ++  +L AC    +  +    LH      G E ++   S L+D   + G ++ A+ V   
Sbjct: 596 SFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIET 655

Query: 233 MPTRDLVVWN-SIIGGFAQNSDVDEALNLYKRM 264
           MP +     N +++G      DV+    +  R+
Sbjct: 656 MPFKASASINRALLGACRIQGDVETGKRVAARL 688


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 233/572 (40%), Positives = 361/572 (63%), Gaps = 6/572 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y  LI  C    ++++A+ +H H+    F    FL N L++++ K   + +A+ +FD MP
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQ 193
            R++ SWT++I+ Y    M D+AL LL  MLR   +PN FT++++L+A     S  I  Q
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H   +K  +  DV+V SAL+D+YA+ G +  A  VF+++ +++ V WN++I GFA+  D
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNA 311
            +  L ++  M+R GF A   T +SV  A  G+  LE G  VH H++K    L   + N 
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNT 306

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           +LDMY K GS+ DA  VF R+ +KDV++W++M++  AQ G  +EA+  FE M+   +  N
Sbjct: 307 ILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLN 366

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            IT + +L ACSH G V++G  +F  MK+ Y ++P  +HY  ++DLLGRAG L +A+  I
Sbjct: 367 QITFLSILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFI 425

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
            +MP +P A  W ALLG+C++H+N  +   AA  +  LDP D G  +LL NIYA++ +WD
Sbjct: 426 FKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWD 485

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
             A VRK M+A G+ KEP CSW+E+   +H F   D +HP+ ++I K  + +  ++   G
Sbjct: 486 AAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAG 545

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           Y P+T+YVL  ++ ++++  +QYHSEK+A+ F L+++  G TIRI KN+RICGDCH+  +
Sbjct: 546 YVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFR 605

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             +K+  + IV+RD  R+HHF  G+CSCGDYW
Sbjct: 606 YISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 154/303 (50%), Gaps = 11/303 (3%)

Query: 52  QRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Q D+P  A+  +  M     + +  T+A L+K   A  +    + +H   +   +  + +
Sbjct: 142 QNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVY 201

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF--MLR 168
           + + LL+M+ +   ++ A  +FDQ+  +N VSW  +I+ +  A+  D    LL+F  M R
Sbjct: 202 VGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGF--ARKGDGETTLLMFAEMQR 259

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
            G     FTYS+V  A   +  L Q   +H  +IK G     FV + ++D+YAK G + +
Sbjct: 260 NGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMID 319

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VF+ +  +D+V WNS++  FAQ     EA+  ++ M++ G   +Q T  S+L AC+ 
Sbjct: 320 ARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSH 379

Query: 286 LALLELGTQVHVHVLKYDHDLILNN--ALLDMYCKCGSLEDAMSVFSRMIQKDVIS-WST 342
             L++ G Q    + +Y+ +  +++   ++D+  + G L DA+    +M  K   + W  
Sbjct: 380 GGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGA 439

Query: 343 MIS 345
           ++ 
Sbjct: 440 LLG 442



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 104/221 (47%), Gaps = 30/221 (13%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ +G  A   TY+ +        A+E+ K VH H++  G     F+ N +L+M+ K   
Sbjct: 257 MQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGS 316

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           + +A+ +FD++ +++VV+W +M++A+    +  +A+     M + GV  N  T+ ++L A
Sbjct: 317 MIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTA 376

Query: 185 CDSLIILRQLHCGIIKVG-----------FESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           C         H G++K G            E ++     ++D+  + G L +A     +M
Sbjct: 377 CS--------HGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKM 428

Query: 234 PTRDL-VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           P +    VW +++G          +  ++K  K   FAAD 
Sbjct: 429 PMKPTAAVWGALLG----------SCRMHKNAKIGQFAADH 459


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/591 (41%), Positives = 366/591 (61%), Gaps = 5/591 (0%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+  G   ++ T+  ++K C     ++    +H  V+ GGF+ + F+   L+ 
Sbjct: 96  AIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVC 155

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++ K   LE+A  +FD +P++NVVSWT +IS Y       +A+++   +L   + P+ FT
Sbjct: 156 LYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFT 215

Query: 178 YSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
              VL AC  L  L     +H  I+++G   +VFV ++L+D+YAK G +  A  VF+ MP
Sbjct: 216 IVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMP 275

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            +D+V W ++I G+A N    EA++L+ +M+R     D  T+  VL AC  L  LELG  
Sbjct: 276 EKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEW 335

Query: 295 VH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           V   V   ++ ++ +L  AL+D+Y KCGS+  A  VF  M +KD + W+ +ISGLA NGY
Sbjct: 336 VSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGY 395

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            + +  LF  ++   IKP+  T +G+L  C+HAG V++G  +F SM +F+ + P  EHY 
Sbjct: 396 VKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYG 455

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           CM+DLLGRAG L EA +LI  MP E +A+ W ALLGAC++HR+T LA  A K+++ L+P 
Sbjct: 456 CMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPW 515

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           + G Y+LLSNIY+ + KWDE A+VR +M  + I K PGCSWIEV+  +H F V D  HP 
Sbjct: 516 NSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPL 575

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
            +KI   L  L +K+   GY P T++VL D+E E+KE  +  HSEKLAI FGL+S T   
Sbjct: 576 SEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTA 635

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            IR+ KNLR+CGDCH   KL + +  + I +RD  R+H F++G+CSC DYW
Sbjct: 636 VIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686



 Score =  215 bits (547), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 208/385 (54%), Gaps = 12/385 (3%)

Query: 104 GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL 163
           G   + +L+N++L     FS     + LF Q+ + N+  W TMI         D A+E  
Sbjct: 41  GLCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFY 100

Query: 164 IFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKL 220
             M  EG  PN FT+  VL+AC  L+ L+   ++H  ++K GF+ DVFV+++L+ +YAK 
Sbjct: 101 GLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKC 160

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           G L +A  VF+++P +++V W +II G+       EA+++++R+     A D  T+  VL
Sbjct: 161 GYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVL 220

Query: 281 RACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
            ACT L  L  G  +H  +++     ++ +  +L+DMY KCG++E A SVF  M +KD++
Sbjct: 221 SACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIV 280

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKS 397
           SW  MI G A NG  +EA+ LF  M+   +KP+  T+VGVL AC+  G +E G W     
Sbjct: 281 SWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLV 340

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457
            +  +  +P     + +IDL  + G +  A ++   M  E D V W A++    ++    
Sbjct: 341 DRNEFLYNPVLG--TALIDLYAKCGSMSRAWEVFKGMK-EKDRVVWNAIISGLAMNGYVK 397

Query: 458 LAICAAKKI--LNLDPQDPGTYILL 480
           ++     ++  L + P D  T+I L
Sbjct: 398 ISFGLFGQVEKLGIKP-DGNTFIGL 421


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/606 (40%), Positives = 377/606 (62%), Gaps = 9/606 (1%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           TRF        A+     M+  G   D  TY+ ++  C     +   K +H+ V+  G  
Sbjct: 24  TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLA 83

Query: 107 PETFLVNILLNMHVKFSL---LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK-ALEL 162
            +  +   L++M+ K +    +++++ +F+QMPE NV+SWT +I+AY  +   DK A+EL
Sbjct: 84  LDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIEL 143

Query: 163 LIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
              M+   +RPN F++S+VL+AC +L       Q++   +K+G  S   V ++LI +YA+
Sbjct: 144 FCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYAR 203

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
            G + +A   F+ +  ++LV +N+I+ G+A+N   +EA  L+  +   G      T  S+
Sbjct: 204 SGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASL 263

Query: 280 LRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
           L     +  +  G Q+H  +LK  Y  +  + NAL+ MY +CG++E A  VF+ M  ++V
Sbjct: 264 LSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNV 323

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           ISW++MI+G A++G++  AL++F  M  +  KPN IT V VL ACSH G + +G  HF S
Sbjct: 324 ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNS 383

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457
           M K +GI P  EHY+CM+DLLGR+G L EA++ I+ MP   DA+ WR LLGAC+VH NT+
Sbjct: 384 MYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTE 443

Query: 458 LAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVN 517
           L   AA+ IL  +P DP  YILLSN++A++ +W +V ++RK+M+ R + KE GCSWIEV 
Sbjct: 444 LGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVE 503

Query: 518 KQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSE 577
            ++H F+V ++SHPQ  +I + L  L  K+  +GY PDT++VL D+E EQKE  +  HSE
Sbjct: 504 NRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSE 563

Query: 578 KLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNC 637
           K+A+ FGL+S +Q K IRI KNLR+CGDCHT  K  +    + IV+RD  R+HH ++G C
Sbjct: 564 KIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVC 623

Query: 638 SCGDYW 643
           SC DYW
Sbjct: 624 SCNDYW 629



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 183/336 (54%), Gaps = 13/336 (3%)

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A  +FD+MPERN+V+WT MI+ +        A++L + M   G  P+ FTYS+VL AC  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 188 LIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKL---GELRNAECVFNEMPTRDLVVW 241
           L +L   +QLH  +I++G   DV V  +L+D+YAK    G + ++  VF +MP  +++ W
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 242 NSIIGGFAQNSDVD-EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
            +II  +AQ+ + D EA+ L+ +M       +  + +SVL+AC  L+    G QV+ + +
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183

Query: 301 KYDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K     +  + N+L+ MY + G +EDA   F  + +K+++S++ ++ G A+N  S+EA  
Sbjct: 184 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 243

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDL 417
           LF  +  + I  +  T   +L   +  G +  G   H + +K   G    +   + +I +
Sbjct: 244 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG--GYKSNQCICNALISM 301

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             R G ++ A ++ +EM  + + ++W +++     H
Sbjct: 302 YSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKH 336


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 238/595 (40%), Positives = 372/595 (62%), Gaps = 5/595 (0%)

Query: 54   DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
            +L  + K    MQ  G+  +  TY  +++ C +  AV+  + +H  VL  GF+   ++ +
Sbjct: 453  NLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSS 512

Query: 114  ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            +L++M+ K   L+ A  +F ++ E++VVSWT MI+ Y   +   +AL L   M  +G+  
Sbjct: 513  VLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHS 572

Query: 174  NMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
            +   +++ + AC  +  L   +Q+H      G+  D+ V +AL+ +YA+ G++R+A   F
Sbjct: 573  DNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAF 632

Query: 231  NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
            +++ ++D + WNS+I GFAQ+   +EAL+L+ +M +AG   +  T    + A   +A ++
Sbjct: 633  DKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVK 692

Query: 291  LGTQVHVHVLKYDHD--LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            LG Q+H  ++K  HD    ++N L+ +Y KCG+++DA   F  M +K+ ISW+ M++G +
Sbjct: 693  LGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYS 752

Query: 349  QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
            Q+G+  +AL LFE MK   + PN++T VGVL ACSH G V++G  +F+SM++ +G+ P  
Sbjct: 753  QHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKP 812

Query: 409  EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
            EHY+C++DLLGR+G L  A + + EMP +PDA+  R LL AC VH+N D+   AA  +L 
Sbjct: 813  EHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLE 872

Query: 469  LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
            L+P+D  TY+LLSN+YA + KW      R+ M+ RG+ KEPG SWIEVN  +HAF   D 
Sbjct: 873  LEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQ 932

Query: 529  SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
             HP +DKI ++L+ L +     GY P TN +L D E  QK  +   HSEKLAI FGL+SL
Sbjct: 933  KHPNVDKIYEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSL 992

Query: 589  TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +    I + KNLR+CGDCH + K  +K+ ++ IV+RD  R+HHF+ G CSC DYW
Sbjct: 993  SSSTPIHVFKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  229 bits (583), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 134/402 (33%), Positives = 214/402 (53%), Gaps = 7/402 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++    M    ++ D VT A L+  C +  A+   K  H++ +  G   +  L   LL
Sbjct: 355 KALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALL 414

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +++VK S ++ A   F      NVV W  M+ AY      +++ ++   M  EG+ PN F
Sbjct: 415 DLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQF 474

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           TY ++LR C SL  +    Q+H  ++K GF+ +V+V S LID+YAKLG+L +A  +F  +
Sbjct: 475 TYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRL 534

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +D+V W ++I G+AQ+    EALNL+K M+  G  +D     S + AC G+  L  G 
Sbjct: 535 KEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQ 594

Query: 294 QVHVH--VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+H    V  Y  DL + NAL+ +Y +CG + DA   F ++  KD ISW+++ISG AQ+G
Sbjct: 595 QIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSG 654

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           + +EAL LF  M  +  + N  T    + A ++   V+ G     +M    G D   E  
Sbjct: 655 HCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLG-KQIHAMIIKTGHDSETEVS 713

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           + +I L  + G + +A +   EMP E + ++W A+L     H
Sbjct: 714 NVLITLYAKCGNIDDAERQFFEMP-EKNEISWNAMLTGYSQH 754



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 146/506 (28%), Positives = 250/506 (49%), Gaps = 54/506 (10%)

Query: 49  FCYQRDLPRA--MKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           + Y  D   A  +  +H M+  GVRA+S TY  L+  CL+     +   +H  +L  GF 
Sbjct: 41  YAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFC 100

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
            E  L   L+++++ F  L+ A  +FD+MP R +  W  ++  +   KM  + L L   M
Sbjct: 101 AEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRM 160

Query: 167 LREGVRPNMFTYSAVLRACDSLII----LRQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           L+E V+P+  TY+ VLR C    +    + ++H   I  G+E+ +FV + LID+Y K G 
Sbjct: 161 LQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGF 220

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           L +A+ VF+ +  RD V W +++ G +Q+   +EA+ L+ +M  +G        +SVL A
Sbjct: 221 LNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSA 280

Query: 283 CTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           CT +   ++G Q+H  VLK  +  +  + NAL+ +Y + G+   A  VF+ M+Q+D +S+
Sbjct: 281 CTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSY 340

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           +++ISGL+Q GYS +AL+LF+ M +  +KP+ +T+  +L ACS  G +  G   F S   
Sbjct: 341 NSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVG-KQFHS--- 396

Query: 401 FYGIDPGREH-----------------------------------YSCMIDLLGRAGKLQ 425
            Y I  G                                      ++ M+   G    L 
Sbjct: 397 -YAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLN 455

Query: 426 EAVKLIHEMPY---EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI--LL 480
           E+ K+  +M     EP+  T+ ++L  C   R  DL      ++L    Q    Y+  +L
Sbjct: 456 ESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQ-FNVYVSSVL 514

Query: 481 SNIYANSQKWDEVAEVRKTMRARGIT 506
            ++YA   K D   ++ + ++ + + 
Sbjct: 515 IDMYAKLGKLDHALKIFRRLKEKDVV 540



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 208/391 (53%), Gaps = 9/391 (2%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   GV      ++ ++  C      +  + +H  VL  GF  ET++ N L+ ++ +   
Sbjct: 262 MHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGN 321

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
              A+ +F+ M +R+ VS+ ++IS       +DKALEL   M  + ++P+  T +++L A
Sbjct: 322 FIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSA 381

Query: 185 CDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C S   L++ +Q H   IK G  SD+ +  AL+D+Y K  +++ A   F    T ++V+W
Sbjct: 382 CSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLW 441

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N ++  +    +++E+  ++ +M+  G   +Q T  S+LR C+ L  ++LG Q+H  VLK
Sbjct: 442 NVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLK 501

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
             +  ++ +++ L+DMY K G L+ A+ +F R+ +KDV+SW+ MI+G AQ+    EAL L
Sbjct: 502 TGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNL 561

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLL 418
           F+ M+   I  + I     + AC+    +  G   H ++    Y  D      + ++ L 
Sbjct: 562 FKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVG--NALVSLY 619

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            R GK+++A     ++ +  D ++W +L+  
Sbjct: 620 ARCGKVRDAYFAFDKI-FSKDNISWNSLISG 649


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/606 (40%), Positives = 377/606 (62%), Gaps = 9/606 (1%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           TRF        A+     M+  G   D  TY+ ++  C     +   K +H+ V+  G  
Sbjct: 29  TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLA 88

Query: 107 PETFLVNILLNMHVKFSL---LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK-ALEL 162
            +  +   L++M+ K +    +++++ +F+QMPE NV+SWT +I+AY  +   DK A+EL
Sbjct: 89  LDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIEL 148

Query: 163 LIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
              M+   +RPN F++S+VL+AC +L       Q++   +K+G  S   V ++LI +YA+
Sbjct: 149 FCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYAR 208

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
            G + +A   F+ +  ++LV +N+I+ G+A+N   +EA  L+  +   G      T  S+
Sbjct: 209 SGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASL 268

Query: 280 LRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
           L     +  +  G Q+H  +LK  Y  +  + NAL+ MY +CG++E A  VF+ M  ++V
Sbjct: 269 LSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNV 328

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           ISW++MI+G A++G++  AL++F  M  +  KPN IT V VL ACSH G + +G  HF S
Sbjct: 329 ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNS 388

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457
           M K +GI P  EHY+CM+DLLGR+G L EA++ I+ MP   DA+ WR LLGAC+VH NT+
Sbjct: 389 MYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTE 448

Query: 458 LAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVN 517
           L   AA+ IL  +P DP  YILLSN++A++ +W +V ++RK+M+ R + KE GCSWIEV 
Sbjct: 449 LGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVE 508

Query: 518 KQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSE 577
            ++H F+V ++SHPQ  +I + L  L  K+  +GY PDT++VL D+E EQKE  +  HSE
Sbjct: 509 NRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSE 568

Query: 578 KLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNC 637
           K+A+ FGL+S +Q K IRI KNLR+CGDCHT  K  +    + IV+RD  R+HH ++G C
Sbjct: 569 KIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVC 628

Query: 638 SCGDYW 643
           SC DYW
Sbjct: 629 SCNDYW 634



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 183/336 (54%), Gaps = 13/336 (3%)

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A  +FD+MPERN+V+WT MI+ +        A++L + M   G  P+ FTYS+VL AC  
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 188 LIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKL---GELRNAECVFNEMPTRDLVVW 241
           L +L   +QLH  +I++G   DV V  +L+D+YAK    G + ++  VF +MP  +++ W
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 242 NSIIGGFAQNSDVD-EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
            +II  +AQ+ + D EA+ L+ +M       +  + +SVL+AC  L+    G QV+ + +
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188

Query: 301 KYDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K     +  + N+L+ MY + G +EDA   F  + +K+++S++ ++ G A+N  S+EA  
Sbjct: 189 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 248

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDL 417
           LF  +  + I  +  T   +L   +  G +  G   H + +K   G    +   + +I +
Sbjct: 249 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG--GYKSNQCICNALISM 306

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             R G ++ A ++ +EM  + + ++W +++     H
Sbjct: 307 YSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKH 341


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/595 (41%), Positives = 368/595 (61%), Gaps = 34/595 (5%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
              A+K    M+  G + ++ T+A + K CL   A +  K VH   L   +E + ++   
Sbjct: 221 FKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVA 280

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           LL+++ K   +++A+  F+++P+++V+ W+ MI+ Y  +  + +A+E+   M +  V PN
Sbjct: 281 LLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPN 340

Query: 175 MFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
            FT+++VL+AC   + L +  Q+HC +IK+G  SDVFV +AL+D+YAK G + N+  +F 
Sbjct: 341 QFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFA 400

Query: 232 EMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           E P R D+  WN++I G  Q  D ++AL L+  M      A + T +S LRAC  LA LE
Sbjct: 401 ESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALE 460

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G Q+H   +K  +D D+++ NAL+DMY KCGS++DA  VF  M ++D +SW+ MISG +
Sbjct: 461 PGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYS 520

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
            +G                             AC++AG ++ G  +F SM + +GI+P  
Sbjct: 521 MHG----------------------------LACANAGLLDQGQAYFTSMIQDHGIEPCI 552

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           EHY+CM+ LLGR G L +AVKLI E+P++P  + WRALLGAC +H + +L   +A+ +L 
Sbjct: 553 EHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQHVLE 612

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           ++PQD  T++LLSN+YA +++WD VA VRK M+ +G+ KEPG SWIE    +H+F V D+
Sbjct: 613 MEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDT 672

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
           SHP++  IN  L+ L  K    GY P+ N VL D+E E+KE  +  HSE+LA+ FG++  
Sbjct: 673 SHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRT 732

Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             G  IRI KNLRIC DCH   K  +K+  + IV+RD  R+HHFQ+G CSCGDYW
Sbjct: 733 PSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 787



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 206/380 (54%), Gaps = 6/380 (1%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           +S  YA  ++ C+ +      K +H  +L  G   + F  NILLNM+VK   L +A  LF
Sbjct: 37  NSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLF 96

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR---ACDSLI 189
           D+MPERN +S+ T+I  Y ++    +A+EL + + REG   N F ++ +L+   + D   
Sbjct: 97  DEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDCGE 156

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           +   +H  I K+G ES+ FV +ALID Y+  G +  A  VF+ +  +D+V W  ++  FA
Sbjct: 157 LGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFA 216

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           +N    EAL L+ +M+  GF  +  T  SV +AC GL   ++G  VH   LK  Y+ DL 
Sbjct: 217 ENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLY 276

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           +  ALLD+Y K G ++DA   F  + +KDVI WS MI+  AQ+  S+EA+++F  M+ + 
Sbjct: 277 VGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQAL 336

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           + PN  T   VL AC+    +  G N         G+       + ++D+  + G+++ +
Sbjct: 337 VLPNQFTFASVLQACATMEGLNLG-NQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENS 395

Query: 428 VKLIHEMPYEPDAVTWRALL 447
           + L  E P+  D   W  ++
Sbjct: 396 MXLFAESPHRNDVTPWNTVI 415



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 109/210 (51%), Gaps = 4/210 (1%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
            R+        A++    M+   V  +  T+A +++ C     +     +H HV+  G  
Sbjct: 314 ARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLH 373

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERN-VVSWTTMISAYCDAKMNDKALELLIF 165
            + F+ N L++++ K   +E +  LF + P RN V  W T+I  +      +KAL L + 
Sbjct: 374 SDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLN 433

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           ML   V+    TYS+ LRAC SL  L    Q+H   +K  F+ D+ V +ALID+YAK G 
Sbjct: 434 MLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGS 493

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           +++A  VF+ M  +D V WN++I G++ + 
Sbjct: 494 IKDARLVFDLMNKQDEVSWNAMISGYSMHG 523



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 111/235 (47%), Gaps = 29/235 (12%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D  +A++    M  + V+A  VTY+  ++ C +  A+E    +H+  +   F+ +  + N
Sbjct: 423 DGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTN 482

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY-------CDAKMNDKALELLIFM 166
            L++M+ K   +++A+++FD M +++ VSW  MIS Y        +A + D+       M
Sbjct: 483 ALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLACANAGLLDQGQAYFTSM 542

Query: 167 LRE-GVRPNMFTYSAVLRACDSLIILRQLHCG-----IIKVGFESDVFVRSALI------ 214
           +++ G+ P +  Y+     C   ++ R  H       I ++ F+  V V  AL+      
Sbjct: 543 IQDHGIEPCIEHYT-----CMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIH 597

Query: 215 -DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
            DI  +LG + +A+ V  EM  +D      +   +A     D   ++ K MKR G
Sbjct: 598 NDI--ELGRI-SAQHVL-EMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKG 648


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/606 (40%), Positives = 377/606 (62%), Gaps = 9/606 (1%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           TRF        A+     M+  G   D  TY+ ++  C     +   K +H+ V+  G  
Sbjct: 222 TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLA 281

Query: 107 PETFLVNILLNMHVKFSL---LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK-ALEL 162
            +  +   L++M+ K +    +++++ +F+QMPE NV+SWT +I+AY  +   DK A+EL
Sbjct: 282 LDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIEL 341

Query: 163 LIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
              M+   +RPN F++S+VL+AC +L       Q++   +K+G  S   V ++LI +YA+
Sbjct: 342 FCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYAR 401

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
            G + +A   F+ +  ++LV +N+I+ G+A+N   +EA  L+  +   G      T  S+
Sbjct: 402 SGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASL 461

Query: 280 LRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
           L     +  +  G Q+H  +LK  Y  +  + NAL+ MY +CG++E A  VF+ M  ++V
Sbjct: 462 LSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNV 521

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           ISW++MI+G A++G++  AL++F  M  +  KPN IT V VL ACSH G + +G  HF S
Sbjct: 522 ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNS 581

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457
           M K +GI P  EHY+CM+DLLGR+G L EA++ I+ MP   DA+ WR LLGAC+VH NT+
Sbjct: 582 MYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTE 641

Query: 458 LAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVN 517
           L   AA+ IL  +P DP  YILLSN++A++ +W +V ++RK+M+ R + KE GCSWIEV 
Sbjct: 642 LGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVE 701

Query: 518 KQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSE 577
            ++H F+V ++SHPQ  +I + L  L  K+  +GY PDT++VL D+E EQKE  +  HSE
Sbjct: 702 NRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSE 761

Query: 578 KLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNC 637
           K+A+ FGL+S +Q K IRI KNLR+CGDCHT  K  +    + IV+RD  R+HH ++G C
Sbjct: 762 KIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVC 821

Query: 638 SCGDYW 643
           SC DYW
Sbjct: 822 SCNDYW 827



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/420 (31%), Positives = 233/420 (55%), Gaps = 25/420 (5%)

Query: 47  TRFCYQRDLPR---AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSG 103
            R   Q D+ R   A   +  M       D  TY+ L+K C+     +  KLVH  ++  
Sbjct: 14  NRLIRQLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQS 73

Query: 104 GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP-ERNVVSWTTMISAYCDAKMNDKALEL 162
           G E ++ ++N L++++ K    E A+++F+ M  +R++VSW+ M+S + +  M  +A+  
Sbjct: 74  GLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWT 133

Query: 163 LIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGF-ESDVFVRSALIDIYA 218
            + ML  G  PN + ++AV+RAC +     +   ++  ++K G+ E+DV V   LID++ 
Sbjct: 134 FLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFV 193

Query: 219 K-LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT 277
           K  G+L +A  VF++MP R+LV W  +I  FAQ     +A++L+  M+ +G+  D+ T +
Sbjct: 194 KGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYS 253

Query: 278 SVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKC---GSLEDAMSVFSRM 332
           SVL ACT L LL LG Q+H  V++     D+ +  +L+DMY KC   GS++D+  VF +M
Sbjct: 254 SVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM 313

Query: 333 IQKDVISWSTMISGLAQNGY-SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
            + +V+SW+ +I+   Q+G   +EA++LF  M    I+PN+ +   VL AC +      G
Sbjct: 314 PEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTG 373

Query: 392 WNHFKSMKKFYGIDPGREHYSC----MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
              +      Y +  G    +C    +I +  R+G++++A K   ++ +E + V++ A++
Sbjct: 374 EQVYS-----YAVKLGIASVNCVGNSLISMYARSGRMEDARKAF-DILFEKNLVSYNAIV 427


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/606 (40%), Positives = 377/606 (62%), Gaps = 9/606 (1%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           TRF        A+     M+  G   D  TY+ ++  C     +   K +H+ V+  G  
Sbjct: 204 TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLA 263

Query: 107 PETFLVNILLNMHVKFSL---LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK-ALEL 162
            +  +   L++M+ K +    +++++ +F+QMPE NV+SWT +I+AY  +   DK A+EL
Sbjct: 264 LDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIEL 323

Query: 163 LIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
              M+   +RPN F++S+VL+AC +L       Q++   +K+G  S   V ++LI +YA+
Sbjct: 324 FCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYAR 383

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
            G + +A   F+ +  ++LV +N+I+ G+A+N   +EA  L+  +   G      T  S+
Sbjct: 384 SGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASL 443

Query: 280 LRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
           L     +  +  G Q+H  +LK  Y  +  + NAL+ MY +CG++E A  VF+ M  ++V
Sbjct: 444 LSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNV 503

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           ISW++MI+G A++G++  AL++F  M  +  KPN IT V VL ACSH G + +G  HF S
Sbjct: 504 ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNS 563

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457
           M K +GI P  EHY+CM+DLLGR+G L EA++ I+ MP   DA+ WR LLGAC+VH NT+
Sbjct: 564 MYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTE 623

Query: 458 LAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVN 517
           L   AA+ IL  +P DP  YILLSN++A++ +W +V ++RK+M+ R + KE GCSWIEV 
Sbjct: 624 LGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVE 683

Query: 518 KQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSE 577
            ++H F+V ++SHPQ  +I + L  L  K+  +GY PDT++VL D+E EQKE  +  HSE
Sbjct: 684 NRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSE 743

Query: 578 KLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNC 637
           K+A+ FGL+S +Q K IRI KNLR+CGDCHT  K  +    + IV+RD  R+HH ++G C
Sbjct: 744 KIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVC 803

Query: 638 SCGDYW 643
           SC DYW
Sbjct: 804 SCNDYW 809



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 128/409 (31%), Positives = 229/409 (55%), Gaps = 22/409 (5%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           L  A   +  M       D  TY+ L+K C+     +  KLVH  ++  G E ++ ++N 
Sbjct: 7   LHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNT 66

Query: 115 LLNMHVKFSLLEEAQVLFDQMP-ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
           L++++ K    E A+++F+ M  +R++VSW+ M+S + +  M  +A+   + ML  G  P
Sbjct: 67  LISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYP 126

Query: 174 NMFTYSAVLRACDSL---IILRQLHCGIIKVGF-ESDVFVRSALIDIYAK-LGELRNAEC 228
           N + ++AV+RAC +     +   ++  ++K G+ E+DV V   LID++ K  G+L +A  
Sbjct: 127 NEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYK 186

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           VF++MP R+LV W  +I  FAQ     +A++L+  M+ +G+  D+ T +SVL ACT L L
Sbjct: 187 VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 246

Query: 289 LELGTQVHVHVLKYD--HDLILNNALLDMYCKC---GSLEDAMSVFSRMIQKDVISWSTM 343
           L LG Q+H  V++     D+ +  +L+DMY KC   GS++D+  VF +M + +V+SW+ +
Sbjct: 247 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 306

Query: 344 ISGLAQNGY-SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           I+   Q+G   +EA++LF  M    I+PN+ +   VL AC +      G   +      Y
Sbjct: 307 ITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS-----Y 361

Query: 403 GIDPGREHYSC----MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
            +  G    +C    +I +  R+G++++A K   ++ +E + V++ A++
Sbjct: 362 AVKLGIASVNCVGNSLISMYARSGRMEDARKAF-DILFEKNLVSYNAIV 409


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/573 (41%), Positives = 359/573 (62%), Gaps = 6/573 (1%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
            Y   I  C     +++A+ +H H+ S  FE + FL N L++++ K   + EA  +FD+M
Sbjct: 53  VYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKM 112

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILR 192
            ++++VSWT++I+ Y    M  +A+ LL  ML+   +PN FT++++L+A  +     I  
Sbjct: 113 RKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGG 172

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           Q+H   +K  +  DV+V SAL+D+YA+ G++  A  VF+++ +++ V WN++I GFA+  
Sbjct: 173 QIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKG 232

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNN 310
           D + AL ++  M+R GF A   T +S+     G+  LE G  VH H++K    L   + N
Sbjct: 233 DGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGN 292

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
            +LDMY K GS+ DA  VF R++ KD+++W++M++  AQ G  +EA+  FE M+ S I  
Sbjct: 293 TMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYL 352

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           N IT + +L ACSH G V++G  H+  M K Y ++P  EHY  ++DLLGRAG L  A+  
Sbjct: 353 NQITFLCILTACSHGGLVKEG-KHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVF 411

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
           I +MP EP A  W ALL AC++H+N  +   AA  +  LDP D G  +LL NIYA++  W
Sbjct: 412 IFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHW 471

Query: 491 DEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGV 550
           D  A VRK M+A G+ KEP CSW+E+   +H F   D +HP+ ++I K    +  K+   
Sbjct: 472 DAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEISMKIRKE 531

Query: 551 GYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFA 610
           GY PD +YVL  ++ +++E ++QYHSEK+A+ F L+ +  G TIRI KN+RICGDCH+  
Sbjct: 532 GYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAF 591

Query: 611 KLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           K  +K+  + IV+RD  R+HHF +G+CSCGDYW
Sbjct: 592 KYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 113/255 (44%), Gaps = 35/255 (13%)

Query: 31  SCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAV 90
           S N ++ N+  L+  F R   + D   A+     MQ +G  A   TY+ +        A+
Sbjct: 215 SKNGVSWNA--LISGFAR---KGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGAL 269

Query: 91  EEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
           E+ K VH H++    +   F+ N +L+M+ K   + +A+ +F+++  +++V+W +M++A+
Sbjct: 270 EQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAF 329

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVG-------- 202
               +  +A+     M + G+  N  T+  +L AC         H G++K G        
Sbjct: 330 AQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACS--------HGGLVKEGKHYFDMIK 381

Query: 203 ---FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL-VVWNSIIGGFAQNSDVDEAL 258
               E ++     ++D+  + G L  A     +MP      VW +++           A 
Sbjct: 382 EYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLA----------AC 431

Query: 259 NLYKRMKRAGFAADQ 273
            ++K  K   FAAD 
Sbjct: 432 RMHKNAKVGQFAADH 446


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/587 (41%), Positives = 357/587 (60%), Gaps = 24/587 (4%)

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF------------------ 122
           +K C A         +H   +  G   + F  N LLN++ K                   
Sbjct: 57  LKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGS 116

Query: 123 -SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
            +  E  + +FD+M ER+VVSW T++    +   + +AL  +  M REG RP+ FT S V
Sbjct: 117 STAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTV 176

Query: 182 L---RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
           L     C  +    ++H    + GF+SDVFV S+LID+YA       +  VF+ +P RD 
Sbjct: 177 LPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDH 236

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           ++WNS++ G AQN  V+EAL +++RM +AG      T +S++  C  LA L  G Q+H +
Sbjct: 237 ILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAY 296

Query: 299 VL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           V+   ++ ++ ++++L+DMYCKCG +  A  +F +M   DV+SW+ MI G A +G ++EA
Sbjct: 297 VICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREA 356

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           L LFE M++   KPN+IT + VL ACSHAG V+ GW +FKSM   YGI P  EH++ + D
Sbjct: 357 LVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALAD 416

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476
            LGRAG+L EA   I +M  +P A  W  LL AC+VH+NT LA   AKKI+ L+P+  G+
Sbjct: 417 TLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGS 476

Query: 477 YILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKI 536
           +++LSN+Y+ S +W+E A +R++MR +G+ K+P CSWIEV  ++H F   D SHP  D+I
Sbjct: 477 HVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRI 536

Query: 537 NKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRI 596
              L    +++   G+ P+T  V QD+E E K   +  HSEKLAIVFG++S   G  IR+
Sbjct: 537 IDALNAFSEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAGTKIRV 596

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KNLR+C DCHT  K  +K+ ++ IV+RD  R+HHF+DGNCSCGD+W
Sbjct: 597 MKNLRVCIDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 152/284 (53%), Gaps = 9/284 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G R DS T + ++        V+    VH      GF+ + F+ + L++M+   +  + +
Sbjct: 165 GFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYS 224

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
             +FD +P R+ + W ++++        ++AL +   ML+ GVRP   T+S+++  C +L
Sbjct: 225 VKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNL 284

Query: 189 IILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             LR   QLH  +I  GFE +VF+ S+LID+Y K GE+  A C+F++M + D+V W ++I
Sbjct: 285 ASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMI 344

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD 305
            G+A +    EAL L++RM+      +  T  +VL AC+   L++ G + +   +   + 
Sbjct: 345 MGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWK-YFKSMSNHYG 403

Query: 306 LILN----NALLDMYCKCGSLEDAMSVFSRMIQKDVIS-WSTMI 344
           ++       AL D   + G L++A +  S+M  K   S WST++
Sbjct: 404 IVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLL 447


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 239/595 (40%), Positives = 365/595 (61%), Gaps = 5/595 (0%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D  +A +  + MQ  G + + +++  ++  C    A+   K VH   ++ G   +  +  
Sbjct: 243 DGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVAT 302

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L+ M++    +E A+ +FD+M  R+VVSWT MI  Y +    + A  L   M  EG++P
Sbjct: 303 ALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQP 362

Query: 174 NMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +  TY  ++ AC S   L + R++H  +++ GF +D+ V +AL+ +YAK G +++A  VF
Sbjct: 363 DRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVF 422

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           + M  RD+V W+++IG + +N   +EA   +  MKR     D  T  ++L AC  L  L+
Sbjct: 423 DAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALD 482

Query: 291 LGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
           LG +++   +K D    + + NAL++M  K GS+E A  +F  M+Q+DV++W+ MI G +
Sbjct: 483 LGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYS 542

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
            +G ++EAL LF+ M   R +PN +T VGVL ACS AGFVE+G   F  +    GI P  
Sbjct: 543 LHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTM 602

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           E Y CM+DLLGRAG+L EA  LI+ MP +P++  W  LL AC+++ N D+A  AA++ L 
Sbjct: 603 ELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLM 662

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
            +P D   Y+ LS++YA +  W+ VA+VRK M +RG+ KE GC+WIEV  ++H F V D 
Sbjct: 663 SEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDR 722

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
           SHPQ  +I   L  L+  +   GY P T  VL ++  ++KE++I YHSEKLAI +G++SL
Sbjct: 723 SHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSL 782

Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             G  IRI KNLR+CGDCH+ +K  +K+  + I+ RD  R+HHF++G CSCGDYW
Sbjct: 783 PSGAPIRIFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 206/383 (53%), Gaps = 9/383 (2%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           DS TY +L + C+        K V +H++  G +   + +N L+ +H     + EA+  F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS---LI 189
           D +  + VV+W  +I+ Y       +A  L   M+ E + P++ T+  VL AC S   L 
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           + ++ H  +IKVGF SD  + +AL+ +Y K G +  A  VF+ +  RD+  +N +IGG+A
Sbjct: 180 LGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYA 239

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLI 307
           ++ D ++A  L+ RM++ GF  ++ +  S+L  C+    L  G  VH   +      D+ 
Sbjct: 240 KSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVR 299

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           +  AL+ MY  CGS+E A  VF +M  +DV+SW+ MI G A+N   ++A  LF +M+   
Sbjct: 300 VATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEG 359

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
           I+P+ IT + ++ AC+ +  +      H + ++  +G D   +  + ++ +  + G +++
Sbjct: 360 IQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVD--TALVHMYAKCGAIKD 417

Query: 427 AVKLIHEMPYEPDAVTWRALLGA 449
           A ++   M    D V+W A++GA
Sbjct: 418 ARQVFDAMS-RRDVVSWSAMIGA 439


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 239/590 (40%), Positives = 368/590 (62%), Gaps = 13/590 (2%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   G   D  T + +I  C     +   + +H+  +  G   +  +   L+NM+ K S+
Sbjct: 262 MILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSV 321

Query: 125 ---LEEAQVLFDQMPERNVVSWTTMISAYCD-AKMNDKALELLIFMLREGVRPNMFTYSA 180
              +  A+ +FDQ+ + NV SWT MI+ Y      +++AL+L   M+   V PN FT+S+
Sbjct: 322 DGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSS 381

Query: 181 VLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
            L+AC +L  LR   Q+    +K+GF S   V ++LI +YA+ G + +A   F+ +  ++
Sbjct: 382 TLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKN 441

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           L+ +N++I  +A+N + +EAL L+  ++  G  A   T  S+L     +  +  G Q+H 
Sbjct: 442 LISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHA 501

Query: 298 HVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
            V+K    L LN    NAL+ MY +CG++E A  VF  M  ++VISW+++I+G A++G++
Sbjct: 502 RVIK--SGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFA 559

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
            +AL+LF  M    ++PN +T + VL ACSH G V +GW HFKSM   +G+ P  EHY+C
Sbjct: 560 TQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYAC 619

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           M+D+LGR+G L EA++ I+ MPY+ DA+ WR  LGAC+VH N +L   AAK I+  +P D
Sbjct: 620 MVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHD 679

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQI 533
           P  YILLSN+YA++ KWDEV+ +RK M+ + + KE GCSW+EV  ++H F V D+SHP+ 
Sbjct: 680 PAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKA 739

Query: 534 DKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT 593
            +I   L++L  K+  +GY P+ ++VL D+E EQKE  +  HSEK+A+ FGL+S ++ K 
Sbjct: 740 AEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKP 799

Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           IR+ KNLRICGDCH+  K  +    + I++RD  R+HH +DG CSC +YW
Sbjct: 800 IRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 220/424 (51%), Gaps = 26/424 (6%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           L +A+  +  M   G   D  TY+  +K C+   + +   LVH  +     + ++  +N 
Sbjct: 47  LHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNS 106

Query: 115 LLNMHVKFSLLEEAQVLFDQM-PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
           L++++ K    E+A  +F  M   R+++SW+ M+S + +  M  +AL   + M+  G  P
Sbjct: 107 LISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYP 166

Query: 174 NMFTYSAVLRACDS---LIILRQLHCGIIKVGF-ESDVFVRSALIDIYAK-LGELRNAEC 228
           N + ++A  RAC +   + +   +   ++K G+ +SDV V   LID++ K  G+L +A  
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFK 226

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           VF +MP R+ V W  +I    Q     EA++L+  M  +G+  D+ TL+ V+ AC  + L
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMEL 286

Query: 289 LELGTQVHVHVLKYDHDLILNN----ALLDMYCKC---GSLEDAMSVFSRMIQKDVISWS 341
           L LG Q+H   ++  H L L+      L++MY KC   GS+  A  +F +++  +V SW+
Sbjct: 287 LLLGQQLHSQAIR--HGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWT 344

Query: 342 TMISGLAQ-NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
            MI+G  Q  GY +EAL LF  M ++ + PN+ T    L AC++   +  G   F     
Sbjct: 345 AMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFT---- 400

Query: 401 FYGIDPGREHYSC----MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
            + +  G    +C    +I +  R+G++ +A K   ++ +E + +++  ++ A   + N+
Sbjct: 401 -HAVKLGFSSVNCVANSLISMYARSGRIDDARKAF-DILFEKNLISYNTVIDAYAKNLNS 458

Query: 457 DLAI 460
           + A+
Sbjct: 459 EEAL 462



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 107/212 (50%), Gaps = 23/212 (10%)

Query: 51  YQRDL--PRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           Y ++L    A++  + ++  G+ A + T+A L+    +   + + + +H  V+  G +  
Sbjct: 452 YAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLN 511

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             + N L++M+ +   +E A  +F+ M +RNV+SWT++I+ +       +ALEL   ML 
Sbjct: 512 QSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLE 571

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGF--------ESDVFVR----SALIDI 216
           EGVRPN+ TY AVL AC         H G++  G+        E  V  R    + ++DI
Sbjct: 572 EGVRPNLVTYIAVLSACS--------HVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDI 623

Query: 217 YAKLGELRNAECVFNEMPTR-DLVVWNSIIGG 247
             + G L  A    N MP + D +VW + +G 
Sbjct: 624 LGRSGSLSEAIQFINSMPYKADALVWRTFLGA 655


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 254/649 (39%), Positives = 375/649 (57%), Gaps = 57/649 (8%)

Query: 52  QRDLPRAMKAMHAMQCHG-----------------VRADSVTYAELIKCCLARHAVEEAK 94
           Q DLP     + A+  HG                 V  D +    + K C +   V  AK
Sbjct: 39  QPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAK 98

Query: 95  LVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK 154
            VH   +  GF  +  L N L++M+ K    E A+++F+ MP R+V+SWT+M S Y +  
Sbjct: 99  RVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCG 158

Query: 155 MNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRS 211
           +  +AL     M   G RPN  T S++L AC  L  L   R++H  +++ G   +VFV S
Sbjct: 159 LLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSS 218

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWN----------------------------- 242
           AL+++YA    +R A+ VF+ M  RD V WN                             
Sbjct: 219 ALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGL 278

Query: 243 ------SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
                 ++IGG  QN   ++AL +  RM+ +GF  +Q T+TSVL ACT L  L  G Q+H
Sbjct: 279 NYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIH 338

Query: 297 VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
            ++ +  +  DL    AL+ MY KCG LE +  VFS M ++D +SW+TMI   + +G  +
Sbjct: 339 GYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGE 398

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414
           EAL LF  M  S ++PN +T  GVL  CSH+  V++G   F SM + + ++P  +H+SCM
Sbjct: 399 EALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCM 458

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474
           +D+L RAG+L+EA + I +MP EP A  W ALLG C+V++N +L   AA ++  ++  +P
Sbjct: 459 VDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNP 518

Query: 475 GTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQID 534
           G Y+LLSNI  +++ W E +E RK MR RG+TK PGCSWI+V  ++H F V D S+ Q D
Sbjct: 519 GNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSD 578

Query: 535 KINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTI 594
           +I + L ++ +K+   GY P+T++VLQD++ E+KE+ +  HSEKLA+ FG+++L    +I
Sbjct: 579 EIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGESSI 638

Query: 595 RIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           R+ KNLRICGDCH   K  AK+    I++RD +R+HHF+DG CSC D+W
Sbjct: 639 RVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLCSCQDFW 687



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 191/386 (49%), Gaps = 45/386 (11%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL-IFMLREGVRPNMFTYSAVLR 183
           L+ A+ LFD++P+ ++ +WT +ISA      + +A++    F  +  V P+     +V +
Sbjct: 27  LQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAK 86

Query: 184 ACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           AC SL   +  +++H   I+ GF SDV + +ALID+Y K      A  VF  MP RD++ 
Sbjct: 87  ACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVIS 146

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           W S+   +     + EAL  +++M   G   +  T++S+L ACT L  L+ G +VH  V+
Sbjct: 147 WTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVV 206

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS------------- 345
           +     ++ +++AL++MY  C S+  A  VF  M ++D +SW+ +I+             
Sbjct: 207 RNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLS 266

Query: 346 ----------------------GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
                                 G  QNG +++AL++   M+ S  KPN ITI  VL AC+
Sbjct: 267 VFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACT 326

Query: 384 HAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
           +   +  G   H    + ++  D      + ++ +  + G L E  + +  M  + D V+
Sbjct: 327 NLESLRGGKQIHGYIFRHWFFQD--LTTTTALVFMYAKCGDL-ELSRRVFSMMTKRDTVS 383

Query: 443 WRALLGACKVHRNTDLAICAAKKILN 468
           W  ++ A  +H N + A+   +++++
Sbjct: 384 WNTMIIATSMHGNGEEALLLFREMVD 409



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 11/243 (4%)

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG-FAA 271
            I +Y+  G+L+ A  +F+++P  DL  W  +I    ++    EA+  Y   +       
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVF 329
           D+  L SV +AC  L  +    +VH   +++    D++L NAL+DMY KC   E A  VF
Sbjct: 77  DKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVF 136

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
             M  +DVISW++M S     G  +EAL  F  M ++  +PN +T+  +L AC+    ++
Sbjct: 137 EGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLK 196

Query: 390 DGWNHFKSMKKFY---GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            G    + +  F    G+       S ++++      +++A +L+ +     D V+W  L
Sbjct: 197 SG----REVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQA-QLVFDSMSRRDTVSWNVL 251

Query: 447 LGA 449
           + A
Sbjct: 252 ITA 254



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 84/172 (48%), Gaps = 6/172 (3%)

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR-IKP 370
            + +Y   G L+ A  +F ++ Q D+ +W+ +IS L ++G S EA++ +   +    ++P
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           + + ++ V  AC+    V +     +   +F G        + +ID+ G+  +  E  +L
Sbjct: 77  DKLLLLSVAKACASLRDVMNAKRVHEDAIRF-GFCSDVLLGNALIDMYGKC-RCSEGARL 134

Query: 431 IHE-MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           + E MP+  D ++W + + +C V+         A + + L+ + P +  + S
Sbjct: 135 VFEGMPFR-DVISWTS-MASCYVNCGLLREALGAFRKMGLNGERPNSVTVSS 184


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 241/586 (41%), Positives = 375/586 (63%), Gaps = 13/586 (2%)

Query: 71  RADSVTYAELIKCCLARHAVEEA--------KLVHNHVLSGGFEPETFLVNILLNMHVKF 122
           + D V++  +I  C+     E+A        + +H+ ++    E + F+   L++M+ K 
Sbjct: 321 QPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKC 380

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
            LLE+A++ F+ +PE+++++W  +IS Y     + +AL L + M +EG+  N  T S +L
Sbjct: 381 DLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTIL 440

Query: 183 RACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
           ++   L ++   RQ+H   +K GF SD++V ++LID Y K   + +AE +F E    DLV
Sbjct: 441 KSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLV 500

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
            + S+I  +AQ    +EAL L+  M+      D+   +S+L AC  L+  E G Q+HVH+
Sbjct: 501 SFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHI 560

Query: 300 LKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           LKY    D+   N+L++MY KCGS++DA   FS + ++ ++SWS MI GLAQ+G+ ++AL
Sbjct: 561 LKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQAL 620

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
           +LF  M    + PN+IT+V VL AC+HAG V +   +F+SM++ +G  P +EHY+CMIDL
Sbjct: 621 QLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDL 680

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           LGRAGK+ EAV+L+++MP+E +A  W ALLGA ++H++ +L   AA+ +  L+P+  GT+
Sbjct: 681 LGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTH 740

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           +LL+NIYA++ KW+ VAEVR+ MR   + KEPG SWIEV  +++ F V D SH +  +I 
Sbjct: 741 VLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIY 800

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
             L  L   +   GY P     L D+E  +KE  + +HSEKLA+ FGL++  QG  IR++
Sbjct: 801 AKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVK 860

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLR+C DCHT  K   K+ ++ I++RD  R+HHF+DG+CSCGDYW
Sbjct: 861 KNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 145/494 (29%), Positives = 233/494 (47%), Gaps = 78/494 (15%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+ A H M   GV+ +  T++ ++K C     +   K VH  V+  GFE + F+ N L+ 
Sbjct: 141 ALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVV 200

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K     +++ LFD++PERNVVSW  + S Y       +A+ L   M+  G++PN F+
Sbjct: 201 MYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFS 260

Query: 178 YSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            S+++ AC  L    +   +H  +IK+G++ D F  +AL+D+YAK+G+L +A  VF ++ 
Sbjct: 261 LSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK 320

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             D+V WN++I G   +   ++AL L  +MKR                           Q
Sbjct: 321 QPDIVSWNAVIAGCVLHEHHEQALELLGQMKR---------------------------Q 353

Query: 295 VHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  ++K D   DL ++  L+DMY KC  LEDA   F+ + +KD+I+W+ +ISG +Q   
Sbjct: 354 LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWE 413

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACS-----------HAGFVEDGWNH----FKS 397
             EAL LF  M    I  N  T+  +L + +           H   V+ G++       S
Sbjct: 414 DMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNS 473

Query: 398 MKKFYGI-----DPGREHYSC----------MIDLLGRAGKLQEAVKL---IHEMPYEPD 439
           +   YG      D  R    C          MI    + G+ +EA+KL   + +M  +PD
Sbjct: 474 LIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPD 533

Query: 440 AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL-------LSNIYANSQKWDE 492
                +LL AC      +L+     K L++     G ++L       L N+YA     D+
Sbjct: 534 RFVCSSLLNAC-----ANLSAFEQGKQLHVHILKYG-FVLDIFAGNSLVNMYAKCGSIDD 587

Query: 493 VAEVRKTMRARGIT 506
                  +  RGI 
Sbjct: 588 AGRAFSELTERGIV 601



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 171/296 (57%), Gaps = 5/296 (1%)

Query: 74  SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFD 133
           SV+Y++L+  C    ++     +H H+   G   +  + N L+N++ K      A+ L D
Sbjct: 56  SVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVD 115

Query: 134 QMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLII 190
           +  E ++VSW+ +IS Y    +   AL     M   GV+ N FT+S+VL+AC     L I
Sbjct: 116 ESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRI 175

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
            +Q+H  ++  GFE DVFV + L+ +YAK  E  +++ +F+E+P R++V WN++   + Q
Sbjct: 176 GKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQ 235

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
                EA+ L+  M  +G   ++ +L+S++ ACTGL     G  +H +++K  YD D   
Sbjct: 236 XDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFS 295

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
            NAL+DMY K G L DA+SVF ++ Q D++SW+ +I+G   + + ++AL+L   MK
Sbjct: 296 ANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK 351



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 156/298 (52%), Gaps = 17/298 (5%)

Query: 173 PNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P   +YS +L  C +   LR   Q+H  I K G   D  +R+ LI++Y+K      A  +
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKL 113

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
            +E    DLV W+++I G+AQN     AL  +  M   G   ++ T +SVL+AC+ +  L
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDL 173

Query: 290 ELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
            +G QVH  V V  ++ D+ + N L+ MY KC    D+  +F  + +++V+SW+ + S  
Sbjct: 174 RIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCY 233

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC-----SHAGFVEDGWNHFKSMKKFY 402
            Q  +  EA+ LF  M +S IKPN  ++  ++ AC     S  G +  G+     +K  Y
Sbjct: 234 VQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGY----LIKLGY 289

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
             DP     + ++D+  + G L +A+ +  ++  +PD V+W A++  C +H + + A+
Sbjct: 290 DWDPFSA--NALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQAL 344



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 136/242 (56%), Gaps = 4/242 (1%)

Query: 51  YQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Y  D+  A+     M   G+  +  T + ++K       V   + VH   +  GF  + +
Sbjct: 411 YWEDM-EALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIY 469

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           +VN L++ + K S +E+A+ +F++    ++VS+T+MI+AY      ++AL+L + M    
Sbjct: 470 VVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDME 529

Query: 171 VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
           ++P+ F  S++L AC +L      +QLH  I+K GF  D+F  ++L+++YAK G + +A 
Sbjct: 530 LKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAG 589

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
             F+E+  R +V W+++IGG AQ+    +AL L+ +M + G + +  TL SVL AC    
Sbjct: 590 RAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAG 649

Query: 288 LL 289
           L+
Sbjct: 650 LV 651



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 106/212 (50%), Gaps = 21/212 (9%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A+K    MQ   ++ D    + L+  C    A E+ K +H H+L  GF  + F  N L+
Sbjct: 517 EALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLV 576

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           NM+ K   +++A   F ++ ER +VSW+ MI          +AL+L   ML+EGV PN  
Sbjct: 577 NMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHI 636

Query: 177 TYSAVLRACDSLIILRQLHCGII---KVGFES--DVFV-------RSALIDIYAKLGELR 224
           T  +VL AC+        H G++   K+ FES  ++F         + +ID+  + G++ 
Sbjct: 637 TLVSVLGACN--------HAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKIN 688

Query: 225 NAECVFNEMPTR-DLVVWNSIIGGFAQNSDVD 255
            A  + N+MP   +  VW +++G    + DV+
Sbjct: 689 EAVELVNKMPFEANASVWGALLGAARIHKDVE 720



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 99/216 (45%), Gaps = 20/216 (9%)

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHD 305
           F+++      LNL   + +  F     + + +L  C     L  G Q+H H+ K     D
Sbjct: 34  FSEDPQTTAILNL---IDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDD 90

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
             + N L+++Y KC     A  +     + D++SWS +ISG AQNG    AL  F  M +
Sbjct: 91  PSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHL 150

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG--IDPGREH----YSCMIDLLG 419
             +K N  T   VL ACS    V+D     +  K+ +G  +  G E      + ++ +  
Sbjct: 151 LGVKCNEFTFSSVLKACS---IVKD----LRIGKQVHGVVVVSGFEGDVFVANTLVVMYA 203

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN 455
           +  +  ++ +L  E+P E + V+W AL  +C V  +
Sbjct: 204 KCDEFLDSKRLFDEIP-ERNVVSWNALF-SCYVQXD 237


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/583 (41%), Positives = 363/583 (62%), Gaps = 5/583 (0%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  GV+   +T+A +IK C +   +   KL+    L  GF  +  ++  L+    K   
Sbjct: 286 MQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKE 345

Query: 125 LEEAQVLFDQMPE-RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
           +++A  LF  M E +NVVSWT MIS       ND+A+ L   M REGV+PN FTYSA+L 
Sbjct: 346 MDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAIL- 404

Query: 184 ACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
                + + ++H  +IK  +E    V +AL+D Y KLG   +A  VF  +  +DL+ W++
Sbjct: 405 TVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSA 464

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG-LALLELGTQVHVHVLK- 301
           ++ G+AQ  + +EA  L+ ++ + G   ++ T +SV+ AC    A  E G Q H + +K 
Sbjct: 465 MLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKM 524

Query: 302 -YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
             ++ L +++AL+ MY K G+++ A  VF R  ++D++SW++MISG +Q+G +++AL++F
Sbjct: 525 RLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVF 584

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420
           + M+   +  + +T +GV+ AC+HAG VE G  +F SM   + I+P  +HYSCMIDL  R
Sbjct: 585 DEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSR 644

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480
           AG L++A+ +I+EMP+ P A  WR LLGA +VHRN +L   AA+K+++L P+D   Y+LL
Sbjct: 645 AGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLL 704

Query: 481 SNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHL 540
           SN+YA +  W E   VRK M  R + KEPG SWIEV  + ++F   D +HP  ++I   L
Sbjct: 705 SNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKL 764

Query: 541 KHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNL 600
             L  +L   GY PDT  V  D+E EQKE  + +HSE+LAI FGL++      I+I KNL
Sbjct: 765 SELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPIQIVKNL 824

Query: 601 RICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           R+CGDCH F KL + +E + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 825 RVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 219/439 (49%), Gaps = 37/439 (8%)

Query: 49  FCYQRD--LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           F Y RD     A+    ++    ++ D  T + +   C      +  + VH   +  G  
Sbjct: 66  FSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVKFGLV 125

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
               +   L++M++K   + + + +FD+M ERNVVSWT++++ Y    +     EL   M
Sbjct: 126 DHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQM 185

Query: 167 LREGVRPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
             EGV PN +T S V+ A  +   + I  Q+H  ++K GFE  + V ++LI +Y++LG L
Sbjct: 186 QYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGML 245

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           R+A  VF++M  RD V WNS+I G+ +N    E   ++ +M+ AG      T  SV+++C
Sbjct: 246 RDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSC 305

Query: 284 TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ-KDVISW 340
             L  L L   +    LK  +  D I+  AL+    KC  ++DA+S+FS M + K+V+SW
Sbjct: 306 ASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSW 365

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL-------FACSHAGFVEDGWN 393
           + MISG  QNG + +A+ LF  M+   +KPN+ T   +L        +  HA  ++  + 
Sbjct: 366 TAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYE 425

Query: 394 HFKSMK-----------------KFYGIDPGRE--HYSCMIDLLGRAGKLQEAVKLIHEM 434
              S+                  K + I   ++   +S M+    + G+ +EA KL H++
Sbjct: 426 RSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQL 485

Query: 435 PYE---PDAVTWRALLGAC 450
             E   P+  T+ +++ AC
Sbjct: 486 IKEGIKPNEFTFSSVINAC 504



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 138/277 (49%), Gaps = 10/277 (3%)

Query: 226 AECVFNEMPTRDLVV--WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           A  +F+++P R   +   N ++  ++++    EALNL+  +  +    D+STL+ V   C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 284 TGLALLELGTQVHVHVLKY---DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
            G    +LG QVH   +K+   DH + +  +L+DMY K  ++ D   VF  M +++V+SW
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDH-VSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSW 162

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           +++++G + NG      +LF  M+   + PN  T+  V+ A  + G V  G     +M  
Sbjct: 163 TSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGL-QVHAMVV 221

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            +G +     ++ +I L  R G L++A  +  +M    D VTW +++ A  V    DL +
Sbjct: 222 KHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIR-DWVTWNSMI-AGYVRNGQDLEV 279

Query: 461 CAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497
                 + L    P T++  +++  +     E+A V+
Sbjct: 280 FEIFNKMQLAGVKP-THMTFASVIKSCASLRELALVK 315


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/625 (38%), Positives = 378/625 (60%), Gaps = 31/625 (4%)

Query: 50  CYQRD--LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY     L  ++ + + ++  G+  D   +  L++          A+ +H  V+  GF  
Sbjct: 50  CYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGFHF 109

Query: 108 ETFLVNILLNMHVKF----SLLEE------------------AQVLFDQMPERNVVSWTT 145
           + +  N L+NM+ KF    S L E                   + LFD+MP R+VVSW T
Sbjct: 110 DLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNT 169

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVG 202
           +I+      M ++AL ++  M +E +RP+ FT S++L       ++   +++H   I+ G
Sbjct: 170 VIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHG 229

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
           F+ DVF+ S+LID+YAK  ++  + C F+ +  RD + WNSII G  QN   D+ L  ++
Sbjct: 230 FDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFR 289

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCG 320
           RM +      Q + +SV+ AC  L  L LG Q+H ++++  +D +  + ++LLDMY KCG
Sbjct: 290 RMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCG 349

Query: 321 SLEDAMSVFSR--MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
           +++ A  +F++  M  +D++SW+ +I G A +G++ +A+ LFE M V  +KP Y+  + V
Sbjct: 350 NIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAV 409

Query: 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP 438
           L ACSHAG V++GW +F SM++ +G+ PG EHY+ + DLLGRAG+L+EA   I  M  EP
Sbjct: 410 LTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEP 469

Query: 439 DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRK 498
               W  LL AC+ H+N +LA     KIL +DP + G ++++SNIY+ +Q+W + A++R 
Sbjct: 470 TGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRV 529

Query: 499 TMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNY 558
            MR  G+ K P CSWIEV  ++H F   D SHP  DKIN+ L  L++++   GY  DTN 
Sbjct: 530 RMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYVLDTNE 589

Query: 559 VLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMEN 618
           VL D++ E K D ++ HSE+LAI FG++S T G TIR+ KN+R+C DCHT  K  AK+  
Sbjct: 590 VLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAIKFMAKIVG 649

Query: 619 QTIVIRDPIRYHHFQDGNCSCGDYW 643
           + I++RD  R+HHF++G+CSCGDYW
Sbjct: 650 REIIVRDNSRFHHFKNGSCSCGDYW 674



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 176/355 (49%), Gaps = 29/355 (8%)

Query: 127 EAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC- 185
            AQ++       + ++W  +I  Y    +   +L     +   G+ P+   + ++LRA  
Sbjct: 28  HAQIVKTTKATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRAST 87

Query: 186 --DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLG---------------------- 221
                 + + LH  +I++GF  D++  +AL+++Y+K                        
Sbjct: 88  LFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSV 147

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
           ++ +   +F+ MP RD+V WN++I G AQN   +EALN+ K M +     D  TL+S+L 
Sbjct: 148 KIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILP 207

Query: 282 ACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
             T  A +  G ++H + ++  +D D+ + ++L+DMY KC  +E ++  F  +  +D IS
Sbjct: 208 IFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAIS 267

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           W+++I+G  QNG   + L  F  M   ++KP  ++   V+ AC+H   +  G      + 
Sbjct: 268 WNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYII 327

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY-EPDAVTWRALLGACKVH 453
           +  G D  +   S ++D+  + G ++ A  + +++   + D V+W A++  C +H
Sbjct: 328 RL-GFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMH 381


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 258/648 (39%), Positives = 385/648 (59%), Gaps = 21/648 (3%)

Query: 14   PSSQARQFSLTITPPVASCNTITRNS----SSLLDDFTRFCYQRDLPRAMKAMHAMQCHG 69
            PSS+ R  SL+          + +++    +S++ D  R     D   A++A  +++  G
Sbjct: 1081 PSSRRRPVSLSSNLATWFYKYVDKSNVHSWNSVIADLAR---GGDSVEALRAFSSLRKLG 1137

Query: 70   VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
            +     ++   IK C A   +   ++ H      GFE + F+ + L++M+ K   L++A+
Sbjct: 1138 LIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDAR 1197

Query: 130  VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE--------GVRPNMFTYSAV 181
             LFD++P RNVVSWT+MI+ Y   +  D AL L    L E         V  +     +V
Sbjct: 1198 ALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSV 1257

Query: 182  LRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
            L AC  +    I   +H  ++K GF+  + V + L+D YAK G+   ++ VF+ M  +D 
Sbjct: 1258 LSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDD 1317

Query: 239  VVWNSIIGGFAQNSDVDEALNLYKRMKR-AGFAADQSTLTSVLRACTGLALLELGTQVHV 297
            + WNS+I  +AQ+    EAL ++  M R  G   +  TL++VL AC     L  G  +H 
Sbjct: 1318 ISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHD 1377

Query: 298  HVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
             V+K D  +++ +  +++DMYCKCG +E A   F RM +K+V SW+ M++G   +G ++E
Sbjct: 1378 QVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKE 1437

Query: 356  ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
            AL +F  M  + +KPNYIT V VL ACSHAG VE+GW+ F +MK  Y I+PG EHY CM+
Sbjct: 1438 ALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMV 1497

Query: 416  DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
            DL GRAG L EA  LI  M  +PD V W +LLGAC++H+N DL   AA+K+  LDP + G
Sbjct: 1498 DLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCG 1557

Query: 476  TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
             Y+LLSN+YA++ +W +V  +R  M+ R + K PG S +E+  ++H F V D  HP  + 
Sbjct: 1558 YYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEM 1617

Query: 536  INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
            I K+L+ L  +L  +GY P+   VL D++ E+KE  ++ HSEKLA+ FG+M+   G TI 
Sbjct: 1618 IYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTIN 1677

Query: 596  IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            I KNLR+CGDCHT  KL +K+ ++  V+RD  R+HHF+DG CSCGDYW
Sbjct: 1678 IIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/375 (32%), Positives = 204/375 (54%), Gaps = 36/375 (9%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  ++  G   +  L   L++++     +  A +LF Q+      +W  +I A     +
Sbjct: 46  IHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGL 105

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSA 212
           +++AL L   M+ +G+  + FT+  V++AC + + +   + +H  +IK GF  DVFV++ 
Sbjct: 106 SEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNN 165

Query: 213 LIDIYAK-------------------------------LGELRNAECVFNEMPTRDLVVW 241
           LID Y K                                G+L+ A  +F+E+P++++V W
Sbjct: 166 LIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSW 225

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            ++I G+ +N   +EAL L+KRM+      ++ T+ S+++ACT + +L LG  +H + +K
Sbjct: 226 TAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIK 285

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
              +  + L  AL+DMY KCGS++DA+ VF  M +K + +W++MI+ L  +G  QEAL L
Sbjct: 286 NCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNL 345

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F  M+   +KP+ IT +GVL AC H   V++G  +F  M + YGI P  EHY CM +L  
Sbjct: 346 FSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYA 405

Query: 420 RAGKLQEAVKLIHEM 434
           R+  L EA K   E+
Sbjct: 406 RSNNLDEAFKSTKEV 420



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 133/261 (50%), Gaps = 34/261 (13%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+     M C G+ AD  T+  +IK C    +++  K+VH  ++  GF  + F+ N L+
Sbjct: 108 QALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLI 167

Query: 117 NM-----HVKFSL--------------------------LEEAQVLFDQMPERNVVSWTT 145
           +      H +F+L                          L+EA+ +FD++P +NVVSWT 
Sbjct: 168 DFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTA 227

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVG 202
           MI+ Y   +  ++ALEL   M  E + PN +T  ++++AC  + IL   R +H   IK  
Sbjct: 228 MINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNC 287

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
            E  V++ +ALID+Y+K G +++A  VF  MP + L  WNS+I     +    EALNL+ 
Sbjct: 288 IEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFS 347

Query: 263 RMKRAGFAADQSTLTSVLRAC 283
            M+R     D  T   VL AC
Sbjct: 348 EMERVNVKPDAITFIGVLCAC 368



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 153/307 (49%), Gaps = 37/307 (12%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           +L+ C +   LRQ+H  II+ G  +D  +   LI +Y+  G +  A  +F ++       
Sbjct: 33  LLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFT 92

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           WN II     N   ++AL LYK M   G AAD+ T   V++ACT    ++LG  VH  ++
Sbjct: 93  WNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLI 152

Query: 301 KY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ--------- 349
           KY    D+ + N L+D Y KCG    A+ VF +M  ++V+SW+T+ISGL           
Sbjct: 153 KYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARR 212

Query: 350 -----------------NGY-----SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
                            NGY      +EAL+LF+ M+   I PN  T+V ++ AC+  G 
Sbjct: 213 IFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGI 272

Query: 388 VEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
           +  G   H  ++K    I+ G    + +ID+  + G +++A+++   MP +    TW ++
Sbjct: 273 LTLGRGIHDYAIKNC--IEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK-SLPTWNSM 329

Query: 447 LGACKVH 453
           + +  VH
Sbjct: 330 ITSLGVH 336


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 232/571 (40%), Positives = 360/571 (63%), Gaps = 6/571 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y  LI  C    ++++A+ +H H+    F    FL N L++++ K   + +A+ +FD MP
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQ 193
            R++ SWT++I+ Y    M D+AL LL  MLR   +PN FT++++L+A     S  I  Q
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H   +K  +  DV+V SAL+D+YA+ G +  A  VF+++ +++ V WN++I GFA+  D
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNA 311
            +  L ++  M+R GF A   T +SV  A  G+  LE G  VH H++K    L   + N 
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNT 306

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           +LDMY K GS+ DA  VF R+ +KDV++W++M++  AQ G  +EA+  FE M+   +  N
Sbjct: 307 ILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLN 366

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            IT + +L ACSH G V++G  +F  MK+ Y ++P  +HY  ++DLLGRAG L +A+  I
Sbjct: 367 QITFLSILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFI 425

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
            +MP +P A  W ALLG+C++H+N  +   AA  +  LDP D G  +LL NIYA++ +WD
Sbjct: 426 FKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWD 485

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
             A VRK M+A G+ KEP CSW+E+   +H F   D +HP+ ++I K  + +  ++   G
Sbjct: 486 AAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAG 545

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           Y P+T+YVL  ++ ++++  +QYHSEK+A+ F L+++  G TIRI KN+RICGDCH+  +
Sbjct: 546 YVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFR 605

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
             +K+  + IV+RD  R+HHF  G+CSCGDY
Sbjct: 606 YISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 154/303 (50%), Gaps = 11/303 (3%)

Query: 52  QRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Q D+P  A+  +  M     + +  T+A L+K   A  +    + +H   +   +  + +
Sbjct: 142 QNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVY 201

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF--MLR 168
           + + LL+M+ +   ++ A  +FDQ+  +N VSW  +I+ +  A+  D    LL+F  M R
Sbjct: 202 VGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGF--ARKGDGETTLLMFAEMQR 259

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
            G     FTYS+V  A   +  L Q   +H  +IK G     FV + ++D+YAK G + +
Sbjct: 260 NGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMID 319

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VF+ +  +D+V WNS++  FAQ     EA+  ++ M++ G   +Q T  S+L AC+ 
Sbjct: 320 ARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSH 379

Query: 286 LALLELGTQVHVHVLKYDHDLILNN--ALLDMYCKCGSLEDAMSVFSRMIQKDVIS-WST 342
             L++ G Q    + +Y+ +  +++   ++D+  + G L DA+    +M  K   + W  
Sbjct: 380 GGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGA 439

Query: 343 MIS 345
           ++ 
Sbjct: 440 LLG 442



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 104/221 (47%), Gaps = 30/221 (13%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ +G  A   TY+ +        A+E+ K VH H++  G     F+ N +L+M+ K   
Sbjct: 257 MQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGS 316

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           + +A+ +FD++ +++VV+W +M++A+    +  +A+     M + GV  N  T+ ++L A
Sbjct: 317 MIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTA 376

Query: 185 CDSLIILRQLHCGIIKVG-----------FESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           C         H G++K G            E ++     ++D+  + G L +A     +M
Sbjct: 377 CS--------HGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKM 428

Query: 234 PTRDL-VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           P +    VW +++G          +  ++K  K   FAAD 
Sbjct: 429 PMKPTAAVWGALLG----------SCRMHKNAKIGQFAADH 459


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 235/592 (39%), Positives = 367/592 (61%), Gaps = 6/592 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           + +     M   G+  D  T   ++  C     +   + +H + +   F  E  L N LL
Sbjct: 234 KGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLL 293

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   L  A  +F+ M ER+VVSWT+MI+ Y    ++D ++ L   M +EG+ P++F
Sbjct: 294 DMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIF 353

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T + +L AC    +L   + +H  I +   +SD+FV +AL+D+YAK G + +A  VF+EM
Sbjct: 354 TITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEM 413

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +D+V WN++IGG+++NS  +EALNL+  M+      +  T+  +L AC  LA LE G 
Sbjct: 414 QVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPACASLAALERGQ 472

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           ++H H+L+  +  D  + NAL+DMY KCG+L  A  +F  + +KD++SW+ MI+G   +G
Sbjct: 473 EIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHG 532

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           Y  EA+  F  M+ S I+P+ ++ + +L+ACSH+G +++GW  F  M+    I+P  EHY
Sbjct: 533 YGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHY 592

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +C++DLL RAG L +A K I  MP EPDA  W ALL  C+++ +  LA   A+ +  L+P
Sbjct: 593 ACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEP 652

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
           ++ G Y+LL+NIYA ++KW+EV ++R+ +  RG+ K PGCSWIE+  ++H F   DSSHP
Sbjct: 653 ENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHP 712

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
             +KI   LK    ++   G+ P   Y L   +  +KE ++  HSEK+A+ FG++SL  G
Sbjct: 713 LANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPG 772

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KT+R+ KNLR+CGDCH  AK  +KM  + I++RD  R+HHF+DG+CSC  +W
Sbjct: 773 KTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 824



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 158/538 (29%), Positives = 265/538 (49%), Gaps = 69/538 (12%)

Query: 13  KPSSQARQFSLTITPPVASCNTITRNSSSL---LDDFT----RFCYQRDLPRAMKAMHAM 65
           +PSS+    S  +    A+  T    S ++   + D+     RFC   +L RAM+ ++  
Sbjct: 35  RPSSKTPLVSSNLYHSCATIGTSVLPSETIDCKITDYNIEICRFCELGNLRRAMELIN-- 92

Query: 66  QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE------------------- 106
           Q      +  TY  +++ C    ++++ + +H+ + S   E                   
Sbjct: 93  QSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDL 152

Query: 107 ------------PETFLVNILLNMHVKFS------------------LLEEAQVLFDQMP 136
                        + FL N+L+N + K                     +E A+ LFD++ 
Sbjct: 153 REGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELG 212

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS---LIILRQ 193
           +R+V+SW +MIS Y    +++K L+L   ML  G+  ++ T  +V+  C +   L++ R 
Sbjct: 213 DRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRA 272

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           LH   IK  F  ++ + + L+D+Y+K G L +A  VF  M  R +V W S+I G+A+   
Sbjct: 273 LHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGL 332

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNA 311
            D ++ L+  M++ G + D  T+T++L AC    LLE G  VH ++   K   DL ++NA
Sbjct: 333 SDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNA 392

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+DMY KCGS+ DA SVFS M  KD++SW+TMI G ++N    EAL LF  M+ +  KPN
Sbjct: 393 LMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPN 451

Query: 372 YITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
            IT+  +L AC+    +E G   H   ++  + +D  R   + ++D+  + G L  A +L
Sbjct: 452 SITMACILPACASLAALERGQEIHGHILRNGFSLD--RHVANALVDMYLKCGALGLA-RL 508

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
           + +M  E D V+W  ++    +H     AI A  ++ N    +P     +S +YA S 
Sbjct: 509 LFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRN-SGIEPDEVSFISILYACSH 565



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 102/219 (46%), Gaps = 21/219 (9%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111
           +  LP     +     +  + +S+T A ++  C +  A+E  + +H H+L  GF  +  +
Sbjct: 430 KNSLPNEALNLFVEMQYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHV 489

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV 171
            N L++M++K   L  A++LFD +PE+++VSWT MI+ Y       +A+     M   G+
Sbjct: 490 ANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGI 549

Query: 172 RPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVR------------SALIDIYAK 219
            P+  ++ ++L AC         H G++  G+     +R            + ++D+ A+
Sbjct: 550 EPDEVSFISILYACS--------HSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLAR 601

Query: 220 LGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
            G L  A      MP   D  +W +++ G     DV  A
Sbjct: 602 AGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLA 640


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/581 (40%), Positives = 362/581 (62%), Gaps = 6/581 (1%)

Query: 69   GVRADSVTYAELIKCCLAR-HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
            G++ D  T A +++ C +    +  ++ +H H L  G   ++F+   L++++ K   +EE
Sbjct: 1000 GLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEE 1059

Query: 128  AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
            A+ LF    + ++  W  M+  Y       KALEL   + + G + +  T +   +AC  
Sbjct: 1060 AEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGC 1119

Query: 188  LIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
            L++L   +Q+H   IK GF+SD+ V S ++D+Y K G++ NA  VFN +   D V W S+
Sbjct: 1120 LVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSM 1179

Query: 245  IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD- 303
            I G   N + D+AL +Y RM+++    D+ T  ++++A + +  LE G Q+H +V+K D 
Sbjct: 1180 ISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDC 1239

Query: 304  -HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
              D  +  +L+DMY KCG++EDA  +F +M  +++  W+ M+ GLAQ+G ++EA+ LF+S
Sbjct: 1240 VSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKS 1299

Query: 363  MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
            MK   I+P+ ++ +G+L ACSHAG   + + +  SM   YGI+P  EHYSC++D LGRAG
Sbjct: 1300 MKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAG 1359

Query: 423  KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
             +QEA K+I  MP++  A   RALLGAC++  + +     A ++  L+P D   Y+LLSN
Sbjct: 1360 LVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSN 1419

Query: 483  IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKH 542
            IYA + +WD+V + RK M+ + + K+PG SWI+V   +H F V D SHPQ D I   ++ 
Sbjct: 1420 IYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEE 1479

Query: 543  LIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
            +++ +   GY PDT +VL D+E E+KE S+ YHSEKLAI +GL+S     TIR+ KNLR+
Sbjct: 1480 MMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRV 1539

Query: 603  CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            CGDCH   K  +K+  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 1540 CGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 117/406 (28%), Positives = 192/406 (47%), Gaps = 22/406 (5%)

Query: 73   DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
            D V +  ++K  +     +EA  + +     G  P+ F V ++LN  V     +E + L 
Sbjct: 792  DVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILN-GVSEVNWDEGKWLA 850

Query: 133  DQM-----------PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
            DQ+              +V  W   +S    A  N  A+E  + M    +  +  T   V
Sbjct: 851  DQVQAYAAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVV 910

Query: 182  LRA---CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
            L A    D L + +Q+H   +K G +SDV V ++L+++Y+K+G    A  VFN+M   DL
Sbjct: 911  LAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDL 970

Query: 239  VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA-LLELGTQVHV 297
            + WNS+I   AQ+S  +E++NL+  +   G   D  TL SVLRAC+ L   L +  Q+HV
Sbjct: 971  ISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHV 1030

Query: 298  HVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
            H LK  +  D  +   L+D+Y K G +E+A  +F      D+  W+ M+ G       ++
Sbjct: 1031 HALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKK 1090

Query: 356  ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCM 414
            AL+LF  +  S  K + IT+     AC     ++ G   H  ++K   G D      S +
Sbjct: 1091 ALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKA--GFDSDLHVNSGI 1148

Query: 415  IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            +D+  + G +  A  ++      PD V W +++  C  + N D A+
Sbjct: 1149 LDMYIKCGDMVNA-GIVFNYISAPDDVAWTSMISGCVDNGNEDQAL 1193



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 179/380 (47%), Gaps = 35/380 (9%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139
           L++  ++ H +   K  H  ++  G   + FL N LL M+ K   L  A+ +FD  PER+
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 140 VVSWTTMISAYC---DAKMNDKALELLIF-MLREGVRPNM-FTYSAVLRAC---DSLIIL 191
           +V+W  ++ AY    D+   +    L +F +LR  +      T + VL+ C     L   
Sbjct: 687 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 746

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
             +H   IK+G E DVFV  AL++IY+K G +R+A  +F+ M  RD+V+WN ++ G+ Q 
Sbjct: 747 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 806

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNA 311
               EA  L+    R+G   D+ ++  +L   + +   E G  +   V  Y   L L++ 
Sbjct: 807 GLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDE-GKWLADQVQAYAAKLSLSDD 865

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
             D++C                      W+  +S     G +  A++ F +M    I  +
Sbjct: 866 NPDVFC----------------------WNKKLSECLWAGDNWGAIECFVNMNGLNIDYD 903

Query: 372 YITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
            +T++ VL A +    +E G   H  ++K   G+D      + ++++  + G    A ++
Sbjct: 904 AVTLLVVLAAVAGTDDLELGKQVHGIAVKS--GLDSDVSVANSLVNMYSKMGCAYFAREV 961

Query: 431 IHEMPYEPDAVTWRALLGAC 450
            ++M +  D ++W +++ +C
Sbjct: 962 FNDMKH-LDLISWNSMISSC 980


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 246/587 (41%), Positives = 371/587 (63%), Gaps = 9/587 (1%)

Query: 64  AMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123
           A+Q   ++ D   Y  L+  C+ + AV E + VH H++   + P  +L   L+ ++ K  
Sbjct: 2   AIQGPEIKFDG--YNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCE 59

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
            L  A+ +FD+M ERNVVSWT MIS Y       +AL L + MLR    PN FT++ VL 
Sbjct: 60  CLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLS 119

Query: 184 AC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           +C       + RQ+H  I K  +E+ +FV S+L+D+YAK G +  A  VF  +P RD+V 
Sbjct: 120 SCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVS 179

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
             +II G+AQ    +EAL L+ R++R G +++  T  S+L A +GLA L+ G QVH HVL
Sbjct: 180 CTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVL 239

Query: 301 KYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           + +    ++L N+L+DMY KCG+L  A  +F+ M  + VISW+ M+ G +++G   E +K
Sbjct: 240 RCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVK 299

Query: 359 LFESMKV-SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG-IDPGREHYSCMID 416
           LF+ M+  +++KP+ +T + VL  CSH G  + G   F  M      I+ G EHY C+ID
Sbjct: 300 LFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVID 359

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476
           LLGRAG+++EA +LI +MP+EP A  W +LLGAC+VH NT++      ++L ++P++ G 
Sbjct: 360 LLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGN 419

Query: 477 YILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKI 536
           Y++LSN+YA++ +W++V  VR+ M  + + KEPG SWIE+++ IH F  +D SHP+ +++
Sbjct: 420 YVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEV 479

Query: 537 NKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRI 596
              ++ L+ K    GY PD + VL D++ EQKE  +  HSEKLA+ FGL+S ++G  +R+
Sbjct: 480 FLKVRELLVKFKESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRV 539

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KNLRIC DCH FAK  +K+  + + IRD  R+HH   G CSCGDYW
Sbjct: 540 IKNLRICVDCHNFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 130/313 (41%), Gaps = 43/313 (13%)

Query: 29  VASCNTITRNSSSL-LDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLAR 87
           V SC  I    + L LD+            A++    +Q  G+ ++ VTYA L+      
Sbjct: 177 VVSCTAIISGYAQLGLDE-----------EALELFCRLQREGMSSNYVTYASLLTALSGL 225

Query: 88  HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMI 147
            A++  K VH+HVL         L N L++M+ K   L  A+ +F+ MP R V+SW  M+
Sbjct: 226 AALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAML 285

Query: 148 SAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESD 206
             Y       + ++L   M  E  V+P+  T+ AVL  C         H G+   G E  
Sbjct: 286 VGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCS--------HGGLEDKGLE-- 335

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
                 + D     G+   A           +  +  +I    +   V+EA  L K+M  
Sbjct: 336 ------MFDEMMNGGDEIEA----------GIEHYGCVIDLLGRAGRVEEAFELIKKMP- 378

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALL-DMYCKCGSLEDA 325
             F    +   S+L AC   +   +G  V   +L+ + +   N  +L ++Y   G  ED 
Sbjct: 379 --FEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDV 436

Query: 326 MSVFSRMIQKDVI 338
            +V   M++K VI
Sbjct: 437 RNVRELMMEKAVI 449


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 248/590 (42%), Positives = 368/590 (62%), Gaps = 5/590 (0%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A +  + M+  GV+     +A +IK C     +  AK +H  V+  G + +  +   L+ 
Sbjct: 278 AFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMV 337

Query: 118 MHVKFSLLEEAQVLFDQM-PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
            + K S +++A  LF  M   +NVVSWT +IS Y      D+A+ L   M REGVRPN F
Sbjct: 338 AYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHF 397

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           TYS +L A ++ +   Q+H  ++K  +E+   V +AL D Y+K+G+   A  +F  +  +
Sbjct: 398 TYSTILTA-NAAVSPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEK 456

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG-LALLELGTQV 295
           D+V W++++ G+AQ  D++ A+ ++ ++ + G   ++ T +SVL AC    A +E G Q 
Sbjct: 457 DIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQF 516

Query: 296 HVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H   +K  + + L +++AL+ MY K G++E A  VF R + +D++SW++MISG AQ+G  
Sbjct: 517 HSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCG 576

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
           +++LK+FE M+   ++ + IT +GV+ AC+HAG V +G  +F  M K Y I P  EHYSC
Sbjct: 577 KKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSC 636

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           M+DL  RAG L++A+ LI++MP+   A  WR LL AC+VH N  L   AA+K+++L PQD
Sbjct: 637 MVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQD 696

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQI 533
              Y+LLSNIYA +  W E A+VRK M  + + KE G SWIEV  +  +F   D SHPQ 
Sbjct: 697 SAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQS 756

Query: 534 DKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT 593
           D+I   L+ L  +L   GY PDT YVL D+E E KE  +  HSE+LAI FGL++   G  
Sbjct: 757 DRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTP 816

Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           I+I KNLR+CGDCHT  KL +K+E + IV+RD  R+HHF+ G+CSCGDYW
Sbjct: 817 IQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 119/404 (29%), Positives = 213/404 (52%), Gaps = 13/404 (3%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+K    MQ  G++ +  T+A ++    A  AVE+   VH  V+  G +   F+ N ++
Sbjct: 176 QALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMV 235

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           NM+ K  ++ +A+ +FD M  RN VSW +MI+ +    ++ +A EL   M  EGV+    
Sbjct: 236 NMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQT 295

Query: 177 TYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
            ++ V++ C     +   +QLHC +IK G + D+ +++AL+  Y+K  E+ +A  +F  M
Sbjct: 296 IFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMM 355

Query: 234 -PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
              +++V W +II G+ QN   D A+NL+ +M+R G   +  T +++L A   ++     
Sbjct: 356 HGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVS----P 411

Query: 293 TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
           +Q+H  V+K  Y++   +  AL D Y K G   +A  +F  + +KD+++WS M+SG AQ 
Sbjct: 412 SQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQM 471

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSH-AGFVEDGWNHFKSMKKFYGIDPGRE 409
           G  + A+K+F  +    ++PN  T   VL AC+     VE G   F S     G      
Sbjct: 472 GDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQG-KQFHSCSIKSGFSNALC 530

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             S ++ +  + G ++ A + + +   + D V+W +++     H
Sbjct: 531 VSSALVTMYAKRGNIESANE-VFKRQVDRDLVSWNSMISGYAQH 573



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 130/421 (30%), Positives = 221/421 (52%), Gaps = 16/421 (3%)

Query: 35  ITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAK 94
           ++RN+  LL +F+R    ++   A+     ++  G   D  + + ++K C         K
Sbjct: 57  LSRNNH-LLFEFSRNDQNKE---ALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGK 112

Query: 95  LVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK 154
            VH   +  GF  +  +   L++M++K   +E+ + +FD+M  +NVVSWT++++ Y    
Sbjct: 113 QVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNG 172

Query: 155 MNDKALELLIFMLREGVRPNMFTYSAVLR--ACDSLIILR-QLHCGIIKVGFESDVFVRS 211
           +N++AL+L   M  EG++PN FT++AVL   A D  +    Q+H  +IK G +S +FV +
Sbjct: 173 LNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGN 232

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
           +++++Y+K   + +A+ VF+ M  R+ V WNS+I GF  N    EA  L+ RM+  G   
Sbjct: 233 SMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKL 292

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVF 329
            Q+   +V++ C  +  +    Q+H  V+K   D DL +  AL+  Y KC  ++DA  +F
Sbjct: 293 TQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLF 352

Query: 330 SRMIQ-KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
             M   ++V+SW+ +ISG  QNG +  A+ LF  M+   ++PN+ T   +L A +    V
Sbjct: 353 CMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAA---V 409

Query: 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
                H   +K  Y   P     + + D   + G   EA K I E+  E D V W A+L 
Sbjct: 410 SPSQIHALVVKTNYENSPSVG--TALSDSYSKIGDANEAAK-IFELIDEKDIVAWSAMLS 466

Query: 449 A 449
            
Sbjct: 467 G 467



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 172/339 (50%), Gaps = 8/339 (2%)

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           +Q LFD+ P++ +     ++  +     N +AL L + + R G   +  + S VL+ C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 188 L---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L   I+ +Q+HC  IK GF  DV V ++L+D+Y K   + + E VF+EM  +++V W S+
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           + G+ QN   ++AL L+ +M+  G   +  T  +VL        +E G QVH  V+K   
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           D  + + N++++MY K   + DA +VF  M  ++ +SW++MI+G   NG   EA +LF  
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRA 421
           M++  +K        V+  C++   +      H + +K   G D      + ++    + 
Sbjct: 285 MRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKN--GSDFDLNIKTALMVAYSKC 342

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            ++ +A KL   M    + V+W A++     +  TD A+
Sbjct: 343 SEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAM 381


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 251/584 (42%), Positives = 355/584 (60%), Gaps = 6/584 (1%)

Query: 65   MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
            MQ  G+  DS TY  L+    +  A+E    VH H +  G   +  + +  ++M+++   
Sbjct: 515  MQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGS 574

Query: 125  LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            +++A++LFD++  R+V +W  MI      +   +AL L + M REG  P+  T+  +L A
Sbjct: 575  IDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSA 634

Query: 185  C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
                ++L  ++++H      G   D+ V +AL+  Y+K G ++ A+ VF++M  R++  W
Sbjct: 635  NVDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTW 693

Query: 242  NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
              +IGG AQ+    +A + + +M R G   D +T  S+L AC     LE   +VH H + 
Sbjct: 694  TMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVS 753

Query: 302  YD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
                 DL + NAL+ MY KCGS++DA SVF  M+++DV SW+ MI GLAQ+G   EAL  
Sbjct: 754  AGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDF 813

Query: 360  FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
            F  MK    KPN  + V VL ACSHAG V++G   F SM + YGI+P  EHY+CM+DLLG
Sbjct: 814  FVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLG 873

Query: 420  RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
            RAG L+EA   I  MP EPD   W ALLGAC  + N ++A  AAK+ L L P+   TY+L
Sbjct: 874  RAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVL 933

Query: 480  LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
            LSNIYA + KW++   VR  M+ +GI KEPG SWIEV+ +IH+F V D+SHP+  +I   
Sbjct: 934  LSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQ 993

Query: 540  LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
            L  LI++L   GY PDT  VL++ + E KE ++  HSEKLAIV+GLM       IR+ KN
Sbjct: 994  LNDLIERLKAKGYVPDTRLVLRNTDQEHKEQALCSHSEKLAIVYGLMHTQSKDPIRVYKN 1053

Query: 600  LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            LR+C DCHT  K  +K+  + IV RD  R+HHF+DG CSCGDYW
Sbjct: 1054 LRVCSDCHTATKFISKITGREIVARDAKRFHHFKDGVCSCGDYW 1097



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/453 (30%), Positives = 237/453 (52%), Gaps = 18/453 (3%)

Query: 68  HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
            G+  DS +Y  +++ CL +  +  AK VH  ++  G E   ++ N LL ++++   L+ 
Sbjct: 112 QGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQC 171

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A+ +FD++ ++N+  WTTMI  Y +    + A+ +   M +E  +PN  TY ++L+AC  
Sbjct: 172 ARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCC 231

Query: 188 LIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
            + L   +++H  II+ GF+SDV V +AL+++Y K G + +A+ +F++M  R+++ W  +
Sbjct: 232 PVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVM 291

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD- 303
           IGG A      EA +L+ +M+R GF  +  T  S+L A      LE   +VH H +    
Sbjct: 292 IGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGL 351

Query: 304 -HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
             DL + NAL+ MY K GS++DA  VF  M ++D+ SW+ MI GLAQ+G  QEA  LF  
Sbjct: 352 ALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQ 411

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGW-----NHFKSMKKFYGIDPGREHYSCMIDL 417
           M+ +   PN  T + +L A + A      W      H +       +  G    + +I +
Sbjct: 412 MQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIG----NALIHM 467

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH--RNTDLAICAAKKILNLDPQDPG 475
             + G + +A +L+ +   + D ++W A++G    +   +    +    +   L P D  
Sbjct: 468 YAKCGSIDDA-RLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVP-DST 525

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
           TY+ L N + ++   + V EV K     G+  +
Sbjct: 526 TYLSLLNTHGSTDALEWVNEVHKHAVETGLISD 558



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 133/423 (31%), Positives = 216/423 (51%), Gaps = 14/423 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++  +  + +  D   AM+    M+    + + +TY  ++K C     ++  K +H H
Sbjct: 188 TTMIGGYAEYGHAED---AMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAH 244

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           ++  GF+ +  +   L+NM+VK   +E+AQ++FD+M ERNV+SWT MI          +A
Sbjct: 245 IIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEA 304

Query: 160 LELLIFMLREGVRPNMFTYSAVLRA---CDSLIILRQLHCGIIKVGFESDVFVRSALIDI 216
             L + M REG  PN +TY ++L A     +L  ++++H   +  G   D+ V +AL+ +
Sbjct: 305 FHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHM 364

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           YAK G + +A  VF+ M  RD+  W  +IGG AQ+    EA +L+ +M+R G   + +T 
Sbjct: 365 YAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTY 424

Query: 277 TSVLRAC--TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
            S+L A      + LE    VH H  +  +  DL + NAL+ MY KCGS++DA  VF  M
Sbjct: 425 LSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGM 484

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
             +DVISW+ M+ GLAQNG   EA  +F  M+   + P+  T + +L        +E  W
Sbjct: 485 CDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALE--W 542

Query: 393 -NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
            N         G+       S  I +  R G + +A  L  ++       TW A++G   
Sbjct: 543 VNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVR-HVTTWNAMIGGAA 601

Query: 452 VHR 454
             R
Sbjct: 602 QQR 604



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 173/301 (57%), Gaps = 9/301 (2%)

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALID 215
           A+ +L   +++G+  + F+Y  +L+ C   + +++ +Q+H  IIK G E +++V + L+ 
Sbjct: 102 AVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLR 161

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           +Y + G L+ A  VF+++  +++ +W ++IGG+A+    ++A+ +Y +M++     ++ T
Sbjct: 162 VYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEIT 221

Query: 276 LTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
             S+L+AC     L+ G ++H H+++  +  D+ +  AL++MY KCGS+EDA  +F +M+
Sbjct: 222 YLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMV 281

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW- 392
           +++VISW+ MI GLA  G  QEA  LF  M+     PN  T V +L A + AG +E  W 
Sbjct: 282 ERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALE--WV 339

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
               S     G+       + ++ +  ++G + +A +++ +   E D  +W  ++G    
Sbjct: 340 KEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDA-RVVFDGMTERDIFSWTVMIGGLAQ 398

Query: 453 H 453
           H
Sbjct: 399 H 399


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/611 (39%), Positives = 382/611 (62%), Gaps = 12/611 (1%)

Query: 42  LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL 101
           ++  F +  + RD   A+     M   G   D  T + ++  C     +   +  H  V+
Sbjct: 116 MITRFQQLGFSRD---AVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVM 172

Query: 102 SGGFEPETFLVNILLNMHVKF---SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
             G + +  +   L++M+ K      +++A+ +FD+MP  NV+SWT +I+ Y  +   D+
Sbjct: 173 KSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDR 232

Query: 159 -ALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALI 214
            A+EL + M++  V+PN FT+S+VL+AC +L  +    Q++  ++K+   S   V ++LI
Sbjct: 233 EAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLI 292

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
            +Y++ G + NA   F+ +  ++LV +N+I+  +A++ + +EA  L+  ++ AG   +  
Sbjct: 293 SMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAF 352

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           T  S+L   + +  +  G Q+H  +LK  +  +L + NAL+ MY +CG++E A  VF+ M
Sbjct: 353 TFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEM 412

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
              +VISW++MI+G A++G++  AL+ F  M  + + PN +T + VL ACSH G + +G 
Sbjct: 413 GDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGL 472

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
            HFKSMK  +GI P  EHY+C++DLLGR+G L+EA++L++ MP++ DA+  R  LGAC+V
Sbjct: 473 KHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRV 532

Query: 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCS 512
           H N DL   AA+ IL  DP DP  YILLSN++A++ +W+EVAE+RK M+ R +TKE GCS
Sbjct: 533 HGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCS 592

Query: 513 WIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSI 572
           WIEV  ++H F V D+SHPQ  +I   L  L  K+  +GY P T++VL D+E EQKE  +
Sbjct: 593 WIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYL 652

Query: 573 QYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF 632
             HSEK+A+ +G +S +  + IR+ KNLR+CGDCHT  K  + +  + IV+RD  R+HHF
Sbjct: 653 FQHSEKIAVAYGFISTSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHF 712

Query: 633 QDGNCSCGDYW 643
           +DG CSC DYW
Sbjct: 713 KDGTCSCNDYW 723



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 130/447 (29%), Positives = 238/447 (53%), Gaps = 24/447 (5%)

Query: 50  CYQRDLPRAMKAMHA----MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL-SGG 104
           CY  +  +A +A+ A    ++C G   +   +  + + C  +  +   K++   +L +G 
Sbjct: 16  CYANN-EKAFEAISAFFDMLEC-GFYPNEYCFTGVFRACSNKENISLGKIIFGFLLKTGY 73

Query: 105 FEPETFLVNILLNMHVKFSL-LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL 163
           FE +  +   L++M VK +  LE A  +FD+MP+RNVV+WT MI+ +     +  A++L 
Sbjct: 74  FESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLF 133

Query: 164 IFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKL 220
           + M+  G  P+ FT S V+ AC  + +L   RQ HC ++K G + DV V  +L+D+YAK 
Sbjct: 134 LDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKC 193

Query: 221 ---GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD-EALNLYKRMKRAGFAADQSTL 276
              G + +A  VF+ MP  +++ W +II G+ Q+   D EA+ L+  M +     +  T 
Sbjct: 194 VADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTF 253

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQ 334
           +SVL+AC  L+ + LG QV+  V+K     I  + N+L+ MY +CG++E+A   F  + +
Sbjct: 254 SSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFE 313

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN- 393
           K+++S++T+++  A++  S+EA +LF  ++ +    N  T   +L   S  G +  G   
Sbjct: 314 KNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQI 373

Query: 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           H + +K   G        + +I +  R G ++ A ++ +EM  + + ++W +++     H
Sbjct: 374 HSRILKS--GFKSNLHICNALISMYSRCGNIEAAFQVFNEMG-DGNVISWTSMITGFAKH 430

Query: 454 RNTDLAICAAKKIL--NLDPQDPGTYI 478
                A+    K+L   + P +  TYI
Sbjct: 431 GFATRALETFHKMLEAGVSPNEV-TYI 456



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 186/335 (55%), Gaps = 13/335 (3%)

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQ 193
           +R++VSW+ +IS Y + +   +A+     ML  G  PN + ++ V RAC   +++ + + 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 194 LHCGIIKVG-FESDVFVRSALIDIYAKL-GELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           +   ++K G FESDV V  ALID++ K  G+L +A  VF+ MP R++V W  +I  F Q 
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILN 309
               +A++L+  M  +G+  D+ TL+ V+ AC  + LL LG Q H  V+K   D D+ + 
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVG 183

Query: 310 NALLDMYCKC---GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY-SQEALKLFESMKV 365
            +L+DMY KC   GS++DA  VF RM   +V+SW+ +I+G  Q+G   +EA++LF  M  
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQ 243

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
            ++KPN+ T   VL AC++   +  G   +  + K           S +I +  R G ++
Sbjct: 244 GQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNS-LISMYSRCGNME 302

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            A K   ++ +E + V++  ++ A     N++ A 
Sbjct: 303 NARKAF-DVLFEKNLVSYNTIVNAYAKSLNSEEAF 336


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/628 (37%), Positives = 378/628 (60%), Gaps = 15/628 (2%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAEL 80
           F    +PPV +  ++ R           F  Q    RA+ +   M+  G   D   +  +
Sbjct: 62  FKTLESPPVLAWKSVIRC----------FTDQSLFSRALASFVEMRASGRCPDHNVFPSV 111

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
           +K C     +   + VH  ++  G + + +  N L+NM+ K   ++  + +F+ MP ++V
Sbjct: 112 LKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDV 171

Query: 141 VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCG 197
           VS+ T+I+ Y  + M + AL ++  M    ++P+ FT S+VL      + +   +++H  
Sbjct: 172 VSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGY 231

Query: 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEA 257
           +I+ G +SDV++ S+L+D+YAK   + ++E VF+ +  RD + WNS++ G+ QN   +EA
Sbjct: 232 VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEA 291

Query: 258 LNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDM 315
           L L+++M  A         +SV+ AC  LA L LG Q+H +VL+  +  ++ + +AL+DM
Sbjct: 292 LRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDM 351

Query: 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITI 375
           Y KCG+++ A  +F RM   D +SW+ +I G A +G+  EA+ LFE MK   +KPN +  
Sbjct: 352 YSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAF 411

Query: 376 VGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435
           V VL ACSH G V++ W +F SM K YG++   EHY+ + DLLGRAGKL+EA   I +M 
Sbjct: 412 VAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMR 471

Query: 436 YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAE 495
            EP    W  LL +C VH+N +LA   A+KI  +D ++ G Y+L+ N+YA++ +W E+A+
Sbjct: 472 VEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAK 531

Query: 496 VRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPD 555
           +R  +R +G+ K+P CSWIE+  + H F   D SHP +D+IN+ LK +++++   GY  D
Sbjct: 532 LRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVAD 591

Query: 556 TNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAK 615
           T+ VL D++ E K + +  HSE+LA+ FG+++   G TIR+ KN+RIC DCH   K  +K
Sbjct: 592 TSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISK 651

Query: 616 MENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +  + I++RD  R+HHF  G+CSCGDYW
Sbjct: 652 ITEREIIVRDNSRFHHFNRGSCSCGDYW 679



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 134/261 (51%), Gaps = 7/261 (2%)

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           +QLH   I+    S     S +I IY  L  L  A  VF  + +  ++ W S+I  F   
Sbjct: 25  KQLHAQFIRTQSLSHTSA-SIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQ 83

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILN 309
           S    AL  +  M+ +G   D +   SVL++CT +  L  G  VH  +++   D DL   
Sbjct: 84  SLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTG 143

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
           NAL++MY K   ++    VF  M +KDV+S++T+I+G AQ+G  ++AL++   M  S +K
Sbjct: 144 NALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLK 203

Query: 370 PNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
           P+  T+  VL   S    V  G   H   ++K  GID      S ++D+  ++ +++++ 
Sbjct: 204 PDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRK--GIDSDVYIGSSLVDMYAKSARIEDSE 261

Query: 429 KLIHEMPYEPDAVTWRALLGA 449
           ++   + Y  D+++W +L+  
Sbjct: 262 RVFSHL-YRRDSISWNSLVAG 281


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/591 (40%), Positives = 372/591 (62%), Gaps = 5/591 (0%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+K +  M  + V     T +  +K C A   V+  + +H+ ++    EP++F+   L++
Sbjct: 273 ALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLID 332

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K  LL++A+++FD MP ++V+ W ++IS Y +   + +A+ L   M +EG+  N  T
Sbjct: 333 MYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTT 392

Query: 178 YSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            S +L++     +     Q+H   IK G++ D +V ++L+D Y K   L +A  VF   P
Sbjct: 393 LSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCP 452

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             DLV + S+I  ++Q    +EAL +Y RM+      D    +S+  AC  L+  E G Q
Sbjct: 453 AEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQ 512

Query: 295 VHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +HVHVLK     D+   N+L++MY KCGS++DA  +F+ +  + ++SWS MI GLAQ+G+
Sbjct: 513 IHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGH 572

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            ++AL+LF  M  + I PN+IT+V VL AC+HAG V +    F  M+K +GI P +EHY+
Sbjct: 573 GRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYA 632

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           CM+D+LGR G+L EA+ L+ EMP++  A  W ALLGA ++H+N +L   AA+ +L L+P+
Sbjct: 633 CMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPE 692

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
             GT+ILL+NIYA++  WD VA+VR++M+   + KEPG SWIE+  +++ F V D SHP+
Sbjct: 693 KSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPR 752

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
             +I   L  L ++L   GY P     L D+E  +KE  + +HSEKLA+ FGL++   G 
Sbjct: 753 SKEIYVKLDDLRERLTSAGYVPMIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPGA 812

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            IR++KNLR+C DCHT  K  +K+ ++ I++RD  R+HHF+DG+CSCGDYW
Sbjct: 813 PIRVKKNLRVCIDCHTAFKFISKVASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 215/395 (54%), Gaps = 9/395 (2%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   G+  +  + + ++  C           VH +++  G++ + F  N LL+M+ K   
Sbjct: 179 MISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGC 238

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            E A  +F ++P+ ++VSW  +I+     + ND AL+LL  M    V P+MFT S+ L+A
Sbjct: 239 PEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKA 298

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C ++ ++   RQLH  ++K+  E D FV   LID+Y+K G L++A  VF+ MP +D++VW
Sbjct: 299 CAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVW 358

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           NSII G++      EA++L+  M + G   +Q+TL+++L++  G        QVH   +K
Sbjct: 359 NSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIK 418

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
             Y +D  + N+LLD Y KC  LEDA  VF     +D++++++MI+  +Q G  +EALK+
Sbjct: 419 SGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKM 478

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLL 418
           +  M+   IKP+      +  AC++    E G   H   +K   G+       + ++++ 
Sbjct: 479 YLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLK--CGLLSDVFAGNSLVNMY 536

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            + G + +A  + +E+ +    V+W A++G    H
Sbjct: 537 AKCGSIDDASCIFNEISWR-GIVSWSAMIGGLAQH 570



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 130/433 (30%), Positives = 204/433 (47%), Gaps = 60/433 (13%)

Query: 116 LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKAL--------------- 160
           +N++ K      A+ L     E ++VSW+ +IS Y      ++AL               
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 161 -------------------------ELLIFMLREGVRPNMFTYSAVLRACDSLI---ILR 192
                                     L+  M+  G+ PN F+ S VL AC  L       
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           ++H  +IK+G++SD F  +AL+D+YAK G    A  VF E+P  D+V WN++I G   + 
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNN 310
             D AL L  +M     A    TL+S L+AC  + L++LG Q+H  ++K D   D  +  
Sbjct: 269 KNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGV 328

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
            L+DMY KCG L+DA  VF  M  KDVI W+++ISG +  GY  EA+ LF +M    ++ 
Sbjct: 329 GLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEF 388

Query: 371 NYITIVGVLFACSHA---GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           N  T+  +L + + +   GF E    H  S+K  Y  D    +   ++D  G+   L++A
Sbjct: 389 NQTTLSTILKSTAGSQANGFCEQ--VHTISIKSGYQYDGYVAN--SLLDSYGKCCLLEDA 444

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD--PGTYIL--LSNI 483
            K+    P E D V + +++ A   +    L   A K  L +  +D  P  +I   L N 
Sbjct: 445 AKVFEVCPAE-DLVAYTSMITA---YSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNA 500

Query: 484 YANSQKWDEVAEV 496
            AN   +++  ++
Sbjct: 501 CANLSAYEQGKQI 513


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 247/571 (43%), Positives = 353/571 (61%), Gaps = 9/571 (1%)

Query: 78  AELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE 137
           + L KC      + + K VH  V + G   +  + N LL M  K   L  A +LF++M E
Sbjct: 8   STLFKC----RNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEE 63

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQL 194
           R+ VSW+ MI  +      ++  +    ++R G +P+ F+   V++AC     LI+ R +
Sbjct: 64  RDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLI 123

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
           H  ++K G   D FV S L+D+YAK G + NA+ +F+ MP +DLV    +I G+A+    
Sbjct: 124 HSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKP 183

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNAL 312
           +E+  L+ +M+R GF  D+  + +++ AC  L  +     VH +V   +Y  D+ L  A+
Sbjct: 184 NESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAM 243

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           +DMY KCGS++ +  +F RM QK+VISWS MI     +G  +EAL+LF  M  S I PN 
Sbjct: 244 IDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNR 303

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           IT + +L+ACSHAG V+DG   F  M   YG+ P  +HY+CM+DLLGRAG+L +A++LI 
Sbjct: 304 ITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIE 363

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
            M  E D   W A LGAC++HR  DLA  AAK +L+L  Q+PG YILLSNIYAN+ +W +
Sbjct: 364 NMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKD 423

Query: 493 VAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGY 552
           VA++R  M  R + K PG +WIEV+  I+ F   D+SH + ++I + LK L QKL   GY
Sbjct: 424 VAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGY 483

Query: 553 APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
            PDTN VL D++ E K   +  HSEKLAI FGL++   G  IRI KNLR+CGDCH+F KL
Sbjct: 484 VPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFCKL 543

Query: 613 TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            + +  + I++RD  R+HHF++G CSCGDYW
Sbjct: 544 VSAITQRDIIVRDANRFHHFKEGICSCGDYW 574



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 163/321 (50%), Gaps = 13/321 (4%)

Query: 173 PNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           P+ F   + L  C ++  ++Q+H  +   G   D+ V + L+ + AK  +L  A  +FN+
Sbjct: 3   PDFFI--STLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNK 60

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           M  RD V W+ +IGGF +N D +     ++ + RAG   D  +L  V++AC     L +G
Sbjct: 61  MEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMG 120

Query: 293 TQVHVHVLKYDHDLILNN----ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
             +H  VLK  + L L+N     L+DMY KCG +++A  +F RM +KD+++ + MI+G A
Sbjct: 121 RLIHSTVLK--NGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYA 178

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPG 407
           + G   E+  LF+ M+     P+ + +V ++ AC+  G +      H     + Y +D  
Sbjct: 179 ECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDV- 237

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            E  + MID+  + G +  + ++   M  + + ++W A++GA   H     A+     +L
Sbjct: 238 -ELGTAMIDMYAKCGSIDSSREIFDRME-QKNVISWSAMIGAYGYHGQGREALELFHMML 295

Query: 468 NLDPQDPGTYILLSNIYANSQ 488
           N     P     +S +YA S 
Sbjct: 296 N-SGIIPNRITFISLLYACSH 315



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 183/385 (47%), Gaps = 36/385 (9%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           F    D  R  +    +   G + D+ +   +IK C     +   +L+H+ VL  G   +
Sbjct: 76  FVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLD 135

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F+ + L++M+ K  +++ A+ LFD+MP++++V+ T MI+ Y +    +++  L   M R
Sbjct: 136 NFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRR 195

Query: 169 EGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           +G  P+      ++ AC  L  +   R +H  +    +  DV + +A+ID+YAK G + +
Sbjct: 196 DGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDS 255

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           +  +F+ M  ++++ W+++IG +  +    EAL L+  M  +G   ++ T  S+L AC+ 
Sbjct: 256 SREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSH 315

Query: 286 LALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
             L++ G Q                           L   MSV S  ++ DV  ++ M+ 
Sbjct: 316 AGLVDDGLQ---------------------------LFSLMSV-SYGVRPDVKHYTCMVD 347

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
            L + G   +AL+L E+M+V + +  +   +G   AC     V+      K +      +
Sbjct: 348 LLGRAGRLDQALRLIENMEVEKDEGIWCAFLG---ACRIHRQVDLAEKAAKLLLSLQTQN 404

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKL 430
           PG  HY  + ++   AG+ ++  K+
Sbjct: 405 PG--HYILLSNIYANAGRWKDVAKI 427


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 242/616 (39%), Positives = 374/616 (60%), Gaps = 28/616 (4%)

Query: 56  PR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           PR A+     M+   +  DS     ++K C         K +H   +  G   + F+VN 
Sbjct: 90  PRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNA 149

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD--------------------AK 154
           L+ M+ +   L  A++LFD+M ER+VVSW+TMI AY                       +
Sbjct: 150 LMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIR 209

Query: 155 MND--KALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFV 209
            ND  +   L + M+ E V PN  T  +++ +C    ++ + ++LH  I++ GF   + +
Sbjct: 210 CNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLAL 269

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
            +AL+D+Y K GE+R+A  +F+ M  +D++ W ++I  +AQ + +D A  L+ +M+  G 
Sbjct: 270 ATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGV 329

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMS 327
             ++ T+ S+L  C     L++G   H ++ K   + D+IL  AL+DMY KCG +  A  
Sbjct: 330 RPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQR 389

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           +FS  I +D+ +W+ M++G   +GY ++ALKLF  M+   +KPN IT +G L ACSHAG 
Sbjct: 390 LFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGL 449

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           V +G   F+ M   +G+ P  EHY CM+DLLGRAG L EA K+I  MP  P+   W A+L
Sbjct: 450 VVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAML 509

Query: 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507
            ACK+H+N+++   AA+++L L+PQ+ G  +L+SNIYA + +W++VA +RK ++  GI K
Sbjct: 510 AACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKK 569

Query: 508 EPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQ 567
           EPG S IEVN  +H F + D++HP I+KI++ L  + +KL   GY PDT+ VL +++ E+
Sbjct: 570 EPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEE 629

Query: 568 KEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPI 627
           KE ++ YHSEKLA+ FGL+S   G  IR+ KNLRIC DCHT  KL +K+  + I++RD  
Sbjct: 630 KETALNYHSEKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRN 689

Query: 628 RYHHFQDGNCSCGDYW 643
           R+HHF++G+CSCG YW
Sbjct: 690 RFHHFREGSCSCGGYW 705



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 150/301 (49%), Gaps = 9/301 (2%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           DL    +    M    V  + +T   LI  C    AV+  K +H ++L  GF     L  
Sbjct: 212 DLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALAT 271

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L++M+ K   +  A+ +FD M  ++V++WT MISAY  A   D A +L + M   GVRP
Sbjct: 272 ALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRP 331

Query: 174 NMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           N  T  ++L  C    +L + +  H  I K G E DV +++ALID+YAK G++  A+ +F
Sbjct: 332 NELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLF 391

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           +E   RD+  WN ++ G+  +   ++AL L+  M+  G   +  T    L AC+   L+ 
Sbjct: 392 SEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVV 451

Query: 291 LGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMIS 345
            G  +   ++ +D  L+        ++D+  + G L++A  +   M +  ++  W  M++
Sbjct: 452 EGKGLFEKMI-HDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLA 510

Query: 346 G 346
            
Sbjct: 511 A 511


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/604 (41%), Positives = 367/604 (60%), Gaps = 14/604 (2%)

Query: 54   DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
            D   A++A  +++  G+     ++   IK C A   +   ++ H      GFE + F+ +
Sbjct: 1995 DSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSS 2054

Query: 114  ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE---- 169
             L++M+ K   L++A+ LFD++P RNVVSWT+MI+ Y   +  D AL L    L E    
Sbjct: 2055 ALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEV 2114

Query: 170  ----GVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
                 V  +     +VL AC  +    I   +H  ++K GF+  + V + L+D YAK G+
Sbjct: 2115 EDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQ 2174

Query: 223  LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR-AGFAADQSTLTSVLR 281
               ++ VF+ M  +D + WNS+I  +AQ+    EAL ++  M R  G   +  TL++VL 
Sbjct: 2175 PLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLL 2234

Query: 282  ACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
            AC     L  G  +H  V+K D  +++ +  +++DMYCKCG +E A   F RM +K+V S
Sbjct: 2235 ACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKS 2294

Query: 340  WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
            W+ M++G   +G ++EAL +F  M  + +KPNYIT V VL ACSHAG VE+GW+ F +MK
Sbjct: 2295 WTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMK 2354

Query: 400  KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
              Y I+PG EHY CM+DL GRAG L EA  LI  M  +PD V W +LLGAC++H+N DL 
Sbjct: 2355 HKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLG 2414

Query: 460  ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQ 519
              AA+K+  LDP + G Y+LLSN+YA++ +W +V  +R  M+ R + K PG S +E+  +
Sbjct: 2415 EIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGR 2474

Query: 520  IHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKL 579
            +H F V D  HP  + I K+L+ L  +L  +GY P+   VL D++ E+KE  ++ HSEKL
Sbjct: 2475 VHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKL 2534

Query: 580  AIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
            A+ FG+M+   G TI I KNLR+CGDCHT  KL +K+ ++  V+RD  R+HHF+DG CSC
Sbjct: 2535 AVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSC 2594

Query: 640  GDYW 643
            GDYW
Sbjct: 2595 GDYW 2598



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/375 (32%), Positives = 204/375 (54%), Gaps = 36/375 (9%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  ++  G   +  L   L++++     +  A +LF Q+      +W  +I A     +
Sbjct: 46  IHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGL 105

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSA 212
           +++AL L   M+ +G+  + FT+  V++AC + + +   + +H  +IK GF  DVFV++ 
Sbjct: 106 SEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNN 165

Query: 213 LIDIYAK-------------------------------LGELRNAECVFNEMPTRDLVVW 241
           LID Y K                                G+L+ A  +F+E+P++++V W
Sbjct: 166 LIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSW 225

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            ++I G+ +N   +EAL L+KRM+      ++ T+ S+++ACT + +L LG  +H + +K
Sbjct: 226 TAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIK 285

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
              +  + L  AL+DMY KCGS++DA+ VF  M +K + +W++MI+ L  +G  QEAL L
Sbjct: 286 NCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNL 345

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F  M+   +KP+ IT +GVL AC H   V++G  +F  M + YGI P  EHY CM +L  
Sbjct: 346 FSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYA 405

Query: 420 RAGKLQEAVKLIHEM 434
           R+  L EA K   E+
Sbjct: 406 RSNNLDEAFKSTKEV 420



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 137/270 (50%), Gaps = 34/270 (12%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+     M C G+ AD  T+  +IK C    +++  K+VH  ++  GF  + F+ N L+
Sbjct: 108 QALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLI 167

Query: 117 NM-----HVKFSL--------------------------LEEAQVLFDQMPERNVVSWTT 145
           +      H +F+L                          L+EA+ +FD++P +NVVSWT 
Sbjct: 168 DFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTA 227

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVG 202
           MI+ Y   +  ++ALEL   M  E + PN +T  ++++AC  + IL   R +H   IK  
Sbjct: 228 MINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNC 287

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
            E  V++ +ALID+Y+K G +++A  VF  MP + L  WNS+I     +    EALNL+ 
Sbjct: 288 IEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFS 347

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELG 292
            M+R     D  T   VL AC  +  ++ G
Sbjct: 348 EMERVNVKPDAITFIGVLCACVHIKNVKEG 377



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 153/307 (49%), Gaps = 37/307 (12%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           +L+ C +   LRQ+H  II+ G  +D  +   LI +Y+  G +  A  +F ++       
Sbjct: 33  LLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFT 92

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           WN II     N   ++AL LYK M   G AAD+ T   V++ACT    ++LG  VH  ++
Sbjct: 93  WNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLI 152

Query: 301 KY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ--------- 349
           KY    D+ + N L+D Y KCG    A+ VF +M  ++V+SW+T+ISGL           
Sbjct: 153 KYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARR 212

Query: 350 -----------------NGY-----SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
                            NGY      +EAL+LF+ M+   I PN  T+V ++ AC+  G 
Sbjct: 213 IFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGI 272

Query: 388 VEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
           +  G   H  ++K    I+ G    + +ID+  + G +++A+++   MP +    TW ++
Sbjct: 273 LTLGRGIHDYAIKN--CIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK-SLPTWNSM 329

Query: 447 LGACKVH 453
           + +  VH
Sbjct: 330 ITSLGVH 336



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 115/221 (52%), Gaps = 18/221 (8%)

Query: 241  WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VH 298
            WNS+I   A+  D  EAL  +  +++ G    +S+    +++C+ L  L  G   H    
Sbjct: 1983 WNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAF 2042

Query: 299  VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
            V  ++ DL +++AL+DMY KCG L+DA ++F  +  ++V+SW++MI+G  QN  +  AL 
Sbjct: 2043 VFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALL 2102

Query: 359  LF-----ESMKV---SRIKPNYITIVGVLFACSHAG--FVEDGWNHFKSMKKFYG-IDPG 407
            LF     E  +V   + +  + + +V VL ACS      + +G + F   K F G I  G
Sbjct: 2103 LFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVG 2162

Query: 408  REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
                + ++D   + G+   + K+   M  E D ++W +++ 
Sbjct: 2163 ----NTLMDAYAKCGQPLVSKKVFDWME-EKDDISWNSMIA 2198



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 329  FSRMIQK-DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH-AG 386
            F + + K +V SW+++I+ LA+ G S EAL+ F S++   + P   +    + +CS    
Sbjct: 1971 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 2030

Query: 387  FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
             V    +H ++    +G +      S +ID+  + G+L++A  L  E+P   + V+W ++
Sbjct: 2031 LVSGRMSHQQAF--VFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR-NVVSWTSM 2087

Query: 447  LGACKVHRNTDLAICAAKKIL 467
            +     +   D A+   K  L
Sbjct: 2088 ITGYVQNEQADNALLLFKDFL 2108


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 257/625 (41%), Positives = 381/625 (60%), Gaps = 28/625 (4%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           +S++ DF R     D  +A+ A  +M+   +  +  T+   IK C + + +   K +H  
Sbjct: 55  NSIIADFAR---SGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQ 111

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
               G+  + F+ + L++M+ K   L +A+ LFD++PERNVVSWT+MIS Y     N++A
Sbjct: 112 AFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQ---NERA 168

Query: 160 LELLIFMLREGVRPNMFTY---------------SAVLRACDSLIILRQLHC--GI-IKV 201
            E  +F+ +E +  +   Y                 V+ AC  + +     C  G+ +K 
Sbjct: 169 REA-VFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKK 227

Query: 202 GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLY 261
           GFE  + V + L+D YAK GE+  +  VF+ M   D+  WNS+I  +AQN    EA +L+
Sbjct: 228 GFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLF 287

Query: 262 KRM-KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCK 318
             M KR     +  TL++VL AC     L++G  +H  V+K   + +L++  +++DMYCK
Sbjct: 288 SDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCK 347

Query: 319 CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
           CG +E A   F R+ +K+V SW+ M++G   +G+ +EA+K+F  M    IKPNYIT V V
Sbjct: 348 CGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSV 407

Query: 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP 438
           L ACSHAG +++GW+ F  MK  + ++PG EHYSCM+DLLGRAG L+EA  LI EM  +P
Sbjct: 408 LAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKP 467

Query: 439 DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRK 498
           D + W +LLGAC++H+N +L   +A+K+  LDP + G Y+LLSNIYA++ +WD+V  +R 
Sbjct: 468 DFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRI 527

Query: 499 TMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNY 558
            M+  G+ K PG S +E   ++H F V D  HPQ +KI ++L  L  KL  VGY P+   
Sbjct: 528 LMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTS 587

Query: 559 VLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMEN 618
           VL D++ E+K   ++ HSEKLA+ FG+M+   G  I+I KNLRICGDCH   KL +K+ N
Sbjct: 588 VLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRICGDCHFAIKLISKIVN 647

Query: 619 QTIVIRDPIRYHHFQDGNCSCGDYW 643
           + IVIRD  R+HHF+DG CSCGDYW
Sbjct: 648 REIVIRDSKRFHHFKDGLCSCGDYW 672


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 247/667 (37%), Positives = 383/667 (57%), Gaps = 40/667 (5%)

Query: 13  KPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRA 72
           KPS     F   +        ++  +SS+ L +FT  C    + +A     +     + +
Sbjct: 5   KPSRSFNAFLNPLYSFTVRSLSMKISSSASLQEFTSLCNDGRIKQAYDTFTS----EIWS 60

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL--------------------- 111
           D   ++ L++ C+   ++   K VH+ +++ G   + F+                     
Sbjct: 61  DPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLF 120

Query: 112 ----------VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALE 161
                      NIL+N +++   LE AQ LFD+M ERN+ +W  MI+     + N +AL 
Sbjct: 121 SNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALS 180

Query: 162 LLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYA 218
           L   M   G  P+ FT  +VLR C    SL+  +++H  ++K GFE    V S+L  +Y 
Sbjct: 181 LFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYI 240

Query: 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278
           K G L + E +   MP R +V WN++I G AQN   +E LN Y  MK AGF  D+ T  S
Sbjct: 241 KSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVS 300

Query: 279 VLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKD 336
           VL AC+ LA L  G Q+H  V+K     +L   ++L+ MY + G LED++  F      D
Sbjct: 301 VLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFD 360

Query: 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
           V+ WS+MI+    +G  +EAL+LF  M+  +++ N +T + +L+ACSH+G  E G  +F 
Sbjct: 361 VVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFD 420

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
            M K Y + P  EHY+C++DLLGRAG+L+EA  +I  MP +PD + W+ LL ACK+H+  
Sbjct: 421 LMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEA 480

Query: 457 DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEV 516
           ++A   +++I+ LDP D  +Y+LLSNI+A+++ W  V+++RK MR R + KEPG SW+E+
Sbjct: 481 EMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLEL 540

Query: 517 NKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHS 576
              +H F++ D SHPQ  +I+ +LK L+ +L   GY P+   VL D++ E+KE ++ +HS
Sbjct: 541 KNLVHQFSMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLAHHS 600

Query: 577 EKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGN 636
           EK AI F LM+ ++   IR+ KNLR+C DCH   K  +++ N+ I++RD  R+HHF+DG 
Sbjct: 601 EKFAIAFALMNTSENVPIRVMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKDGE 660

Query: 637 CSCGDYW 643
           CSCG+YW
Sbjct: 661 CSCGNYW 667


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/572 (41%), Positives = 356/572 (62%), Gaps = 6/572 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y   I  C     +E+A+ +H H+ S  F  + FL N L++M+ K   + +A+ +FDQM 
Sbjct: 54  YRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMR 113

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQ 193
            +++VSWT++I+ Y    M  +A+ LL  ML+   +PN FT++++L+A  +       RQ
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQ 173

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H   +K G+  DV+V SAL+D+YA+ G++  A  VF+++ +++ V WN++I GFA+  D
Sbjct: 174 IHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNA 311
            + AL  +  M R GF A   T +SV  +   L  LE G  VH HV+K    L   + N 
Sbjct: 234 GESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNT 293

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           LLDMY K GS+ DA  VF R+  KD+++W++M++  AQ G  +EA+  FE M+ S +  N
Sbjct: 294 LLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLN 353

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            IT + +L ACSH G V++G  +F+ MK+ Y ++P  +HY  ++ LLGRAG L  A+  I
Sbjct: 354 QITFLCILTACSHGGLVKEGKRYFEMMKE-YDLEPEIDHYVTVVALLGRAGLLNYALVFI 412

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
            +MP EP A  W ALL AC++H+N  +   AA  +  LDP D G  +LL NIYA++ +WD
Sbjct: 413 FKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWD 472

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
             A VR  M+  G+ KEP CSW+E+   +H F   D +HPQ ++I K    + +K+   G
Sbjct: 473 AAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISKKIRKEG 532

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           Y PD +YVL  ++ ++KE ++QYHSEKLA+ F L+ +  G TIRI KN+RICGDCH+  K
Sbjct: 533 YVPDMDYVLLHVDDQEKEANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFK 592

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             +K+  + IV+RD  R+HHF  G+CSCGDYW
Sbjct: 593 YISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 4/256 (1%)

Query: 52  QRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Q D+P  A+  +  M     + +  T+A L+K   A       + +H   +  G+  + +
Sbjct: 129 QNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVY 188

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           + + LL+M+ +   ++ A  +FD++  +N VSW  +IS +      + AL     MLR G
Sbjct: 189 VGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNG 248

Query: 171 VRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
                FTYS+V  +   L  L Q   +H  +IK   +   FV + L+D+YAK G + +A 
Sbjct: 249 FEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDAR 308

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            VF+ +  +DLV WNS++  FAQ     EA++ ++ M+++G   +Q T   +L AC+   
Sbjct: 309 KVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGG 368

Query: 288 LLELGTQVHVHVLKYD 303
           L++ G +    + +YD
Sbjct: 369 LVKEGKRYFEMMKEYD 384



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 111/255 (43%), Gaps = 35/255 (13%)

Query: 31  SCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAV 90
           S N ++ N+  L+  F R   + D   A+     M  +G  A   TY+ +        A+
Sbjct: 215 SKNGVSWNA--LISGFAR---KGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGAL 269

Query: 91  EEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
           E+ K VH HV+    +   F+ N LL+M+ K   + +A+ +FD++  +++V+W +M++A+
Sbjct: 270 EQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAF 329

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVG-------- 202
               +  +A+     M + GV  N  T+  +L AC         H G++K G        
Sbjct: 330 AQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACS--------HGGLVKEGKRYFEMMK 381

Query: 203 ---FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL-VVWNSIIGGFAQNSDVDEAL 258
               E ++     ++ +  + G L  A     +MP      VW +++           A 
Sbjct: 382 EYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLA----------AC 431

Query: 259 NLYKRMKRAGFAADQ 273
            ++K  K   FAAD 
Sbjct: 432 RMHKNAKVGQFAADH 446


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/595 (40%), Positives = 361/595 (60%), Gaps = 5/595 (0%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D  +A +  + MQ  G++ + +++  ++  C    A+   K VH   ++ G   +  +  
Sbjct: 239 DWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVAT 298

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L+ M+     +E A+ +FD M  R+VVSWT MI  Y +    + A  L   M  EG++P
Sbjct: 299 SLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQP 358

Query: 174 NMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +  TY  ++ AC    +L   R++H  +   GF +D+ V +AL+ +YAK G +++A  VF
Sbjct: 359 DRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVF 418

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           + MP RD+V W+++IG + +N    EA   +  MKR+    D  T  ++L AC  L  L+
Sbjct: 419 DAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALD 478

Query: 291 LGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
           +G +++   +K D    + L NAL+ M  K GS+E A  +F  M+++DVI+W+ MI G +
Sbjct: 479 VGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYS 538

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
            +G ++EAL LF+ M   R +PN +T VGVL ACS AGFV++G   F  + +  GI P  
Sbjct: 539 LHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTV 598

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           + Y CM+DLLGRAG+L EA  LI  MP +P +  W +LL AC++H N D+A  AA++ L 
Sbjct: 599 KLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLM 658

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           +DP D   Y+ LS++YA +  W+ VA+VRK M +RGI KE GC+WIEV  ++H F V D 
Sbjct: 659 IDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDR 718

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
           SHP + +I   L  L+  +   GY P T  VL D+  +QKE++I YHSEKLAI +G++SL
Sbjct: 719 SHPLVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLAIAYGVLSL 778

Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             G  IRI KNLR+C DCH+ +K  +K+  + I+ RD  R+HHF+DG CSCGDYW
Sbjct: 779 PSGTPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGDYW 833



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 119/421 (28%), Positives = 217/421 (51%), Gaps = 13/421 (3%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           +  A      M   G+    +T+  ++  C +   +   K VH  V++ GF  +  +   
Sbjct: 139 VKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTA 198

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           L++M+VK   +++A+ +FD +  R+V ++  M+  Y  +   +KA EL   M + G++PN
Sbjct: 199 LVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPN 258

Query: 175 MFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
             ++ ++L  C   ++L   + +H   +  G   D+ V ++LI +Y   G +  A  VF+
Sbjct: 259 KISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFD 318

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
            M  RD+V W  +I G+A+N ++++A  L+  M+  G   D+ T   ++ AC   A L  
Sbjct: 319 NMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNH 378

Query: 292 GTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
             ++H  V +  +  DL+++ AL+ MY KCG+++DA  VF  M ++DV+SWS MI    +
Sbjct: 379 AREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVE 438

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK---FYGIDP 406
           NGY  EA + F  MK S I+P+ +T + +L AC H G ++ G   +    K      +  
Sbjct: 439 NGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPL 498

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
           G    + +I +  + G ++ A + I +     D +TW A++G   +H N   A+    ++
Sbjct: 499 G----NALIIMNAKHGSVERA-RYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRM 553

Query: 467 L 467
           L
Sbjct: 554 L 554



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 204/389 (52%), Gaps = 13/389 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G   DS TY +L + C         K V +H++ GG +   + +N L+ ++     + EA
Sbjct: 52  GNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEA 111

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +FD +  + VV+W  +I+ Y       +A  L   M+ EG+ P++ T+ +VL AC S 
Sbjct: 112 RQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSP 171

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             L   +++H  ++  GF SD  + +AL+ +Y K G + +A  VF+ +  RD+  +N ++
Sbjct: 172 AGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMV 231

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD-- 303
           GG+A++ D ++A  L+ RM++ G   ++ +  S+L  C     L  G  VH   +     
Sbjct: 232 GGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLV 291

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D+ +  +L+ MY  CGS+E A  VF  M  +DV+SW+ MI G A+NG  ++A  LF +M
Sbjct: 292 DDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATM 351

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK---SMKKFYGIDPGREHYSCMIDLLGR 420
           +   I+P+ IT + ++ AC+    +    NH +   S     G        + ++ +  +
Sbjct: 352 QEEGIQPDRITYMHIMNACA----ISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAK 407

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            G +++A ++   MP   D V+W A++GA
Sbjct: 408 CGAIKDARQVFDAMP-RRDVVSWSAMIGA 435



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 105/229 (45%), Gaps = 35/229 (15%)

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLD 314
           A ++ +R+   G   D  T   + + CT L    LG QV  H+++    L +   N L+ 
Sbjct: 41  ANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIK 100

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           +Y  CG++ +A  +F  +  K V++W+ +I+G AQ G+ +EA  LF  M    ++P+ IT
Sbjct: 101 LYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIIT 160

Query: 375 IVGVLFACSH----------------AGFVED---GWNHFKSMKKFYGIDPGRE------ 409
            + VL ACS                 AGFV D   G        K   +D  R+      
Sbjct: 161 FLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLH 220

Query: 410 -----HYSCMIDLLGRAGKLQEAVKLIHEMP---YEPDAVTWRALLGAC 450
                 ++ M+    ++G  ++A +L + M     +P+ +++ ++L  C
Sbjct: 221 IRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGC 269


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/586 (40%), Positives = 366/586 (62%), Gaps = 13/586 (2%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL---L 125
           G   D  T + +I  C     +   + +H+  +  G   +  +   L+NM+ K S+   +
Sbjct: 266 GYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSM 325

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCD-AKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
             A+ +FDQ+ + NV SWT MI+ Y      +++AL+L   M+   V PN FT+S+ L+A
Sbjct: 326 CAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKA 385

Query: 185 CDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C +L  LR   Q+    +K+GF S   V ++LI +YA+ G + +A   F+ +  ++L+ +
Sbjct: 386 CANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISY 445

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N++I  +A+N + +EAL L+  ++  G  A   T  S+L     +  +  G Q+H  V+K
Sbjct: 446 NTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIK 505

Query: 302 YDHDLILN----NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
               L LN    NAL+ MY +CG++E A  VF  M  ++VISW+++I+G A++G++ +AL
Sbjct: 506 --SGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQAL 563

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
           +LF  M    ++PN +T + VL ACSH G V +GW HFKSM   +G+ P  EHY+C++D+
Sbjct: 564 ELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDI 623

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           LGR+G L EA++ I+ MPY+ DA+ WR  LGAC+VH N +L   AAK I+  +P DP  Y
Sbjct: 624 LGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAY 683

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           ILLSN+YA+  KWDEV+ +RK M+ + + KE GCSW+EV  ++H F V D+SHP+  +I 
Sbjct: 684 ILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIY 743

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
             L++L  K+  +GY P+ ++VL D+E EQKE  +  HSEK+A+ FGL+S ++ K IR+ 
Sbjct: 744 DELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVF 803

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLRICGDCH+  K  +    + I++RD  R+HH +DG CSC +YW
Sbjct: 804 KNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/424 (28%), Positives = 220/424 (51%), Gaps = 26/424 (6%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           L +A+  +  M   G   D  TY+  +K C+   + +   LVH  +     + ++  +N 
Sbjct: 47  LHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNS 106

Query: 115 LLNMHVKFSLLEEAQVLFDQM-PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
           L++++ K    E+A  +F  M   R+++SW+ M+S + +  M  +AL   + M+  G  P
Sbjct: 107 LISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYP 166

Query: 174 NMFTYSAVLRACDS---LIILRQLHCGIIKVGF-ESDVFVRSALIDIYAK-LGELRNAEC 228
           N + ++A  RAC +   + +   +   +IK G+ +SDV V   LID++ K  G+L +A  
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFK 226

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           VF +MP R+ V W  +I    Q     EA++L+  M  +G+  D+ TL+ V+ AC  + L
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMEL 286

Query: 289 LELGTQVHVHVLKYDHDLILNN----ALLDMYCKC---GSLEDAMSVFSRMIQKDVISWS 341
           L LG Q+H   ++  H L L+      L++MY KC   GS+  A  +F +++  +V SW+
Sbjct: 287 LLLGQQLHSQAIR--HGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWT 344

Query: 342 TMISGLAQ-NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
            MI+G  Q  GY +EAL LF  M ++ + PN+ T    L AC++   +  G   F     
Sbjct: 345 AMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFT---- 400

Query: 401 FYGIDPGREHYSC----MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
            + +  G    +C    +I +  R+G++ +A K   ++ +E + +++  ++ A   + N+
Sbjct: 401 -HAVKLGFSSVNCVANSLISMYARSGRIDDARKAF-DILFEKNLISYNTVIDAYAKNLNS 458

Query: 457 DLAI 460
           + A+
Sbjct: 459 EEAL 462



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 106/212 (50%), Gaps = 23/212 (10%)

Query: 51  YQRDL--PRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           Y ++L    A++  + ++  G+ A + T+A L+    +   + + + +H  V+  G +  
Sbjct: 452 YAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLN 511

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             + N L++M+ +   +E A  +F+ M +RNV+SWT++I+ +       +ALEL   ML 
Sbjct: 512 QSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLE 571

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGF--------ESDVFVR----SALIDI 216
           EGVRPN  TY AVL AC         H G++  G+        E  V  R    + ++DI
Sbjct: 572 EGVRPNEVTYIAVLSACS--------HVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDI 623

Query: 217 YAKLGELRNAECVFNEMPTR-DLVVWNSIIGG 247
             + G L  A    N MP + D +VW + +G 
Sbjct: 624 LGRSGSLSEAIQFINSMPYKADALVWRTFLGA 655


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 245/647 (37%), Positives = 376/647 (58%), Gaps = 40/647 (6%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEE 92
           +T   + S L  +FT  C +  L +A     +     + ++   ++ L++ C++ +++  
Sbjct: 15  STNPSSGSELTAEFTNLCSKGHLKQAFDRFSSH----IWSEPSLFSHLLQSCISENSLSL 70

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF-------------------- 132
            K +H+ +++ G   + F+ N LLN++ K   L+ A  LF                    
Sbjct: 71  GKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFR 130

Query: 133 -----------DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
                      D+MPERNV +W  M++     + N++ L L   M   G  P+ F   +V
Sbjct: 131 SGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSV 190

Query: 182 LRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
           LR C  L  L   RQ+H  + K GFE ++ V S+L  +Y K G L   E +   MP++++
Sbjct: 191 LRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNV 250

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           V WN++I G AQN   +E L+ Y  MK AGF  D+ T  SV+ +C+ LA L  G Q+H  
Sbjct: 251 VAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAE 310

Query: 299 VLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           V+K    LI++  ++L+ MY +CG LE ++ VF      DV+ WS+MI+    +G   EA
Sbjct: 311 VIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEA 370

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           + LF  M+  +++ N +T + +L+ACSH G  E G   F  M + YG+ P  EHY+CM+D
Sbjct: 371 IDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVD 430

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476
           LLGR G ++EA  LI  MP + D +TW+ LL ACK+H+ T++A   ++++  LDP+DP  
Sbjct: 431 LLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVP 490

Query: 477 YILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKI 536
           Y+LLSNI+A+ ++WD+V++VRK MR R + KEPG SW+EV  QIH F + D SHP+  +I
Sbjct: 491 YVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEI 550

Query: 537 NKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRI 596
             +L+ L  ++   GY PD + VL D++ E KE S+ +HSEKLAI F L+    G  IR+
Sbjct: 551 ASYLRELTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKLAIAFALLYTPVGTPIRV 610

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KNLR+C DCH   K  +++ N+ I++RD  R+HHF++G CSCGDYW
Sbjct: 611 IKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCGDYW 657


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/572 (40%), Positives = 358/572 (62%), Gaps = 6/572 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y  +I  C     +  A+ +H+H+       + FL+N L++M+ K   + +A+ +FD +P
Sbjct: 65  YHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIP 124

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA---CDSLIILRQ 193
            R+VVSWT +I+ Y    M  +AL LL  MLR   RP+ FT+++ L+A   C    I  Q
Sbjct: 125 TRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQ 184

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H   +K   + DV+V SAL+D+YA+  ++  A  VF+ + +++ V WN++I GFA+  D
Sbjct: 185 MHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGD 244

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNA 311
            +  L  +  M+R GF A   T +SV  A   +  LE G  VH H++K    L   + N 
Sbjct: 245 GETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANT 304

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           +L MY K GS+ DA  VF R+ Q+D+++W+TM++  AQ G  +EA+  FE ++   I+ N
Sbjct: 305 ILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLN 364

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            IT + VL ACSH G V++G  +F  MK  Y ++P  +HY   +DLLGRAG L+EA+  +
Sbjct: 365 QITFLSVLTACSHGGLVKEGKQYFDMMKD-YNVEPEIDHYVSFVDLLGRAGLLKEALIFV 423

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
            +MP EP A  W ALLGAC++H+N  +   AA  +  LDP+D G  +LL NIYA++ +WD
Sbjct: 424 FKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWD 483

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
           + A VRK M+A G+ KEP CSW+E+   +H F   DS+HP+ ++I +  + +  ++   G
Sbjct: 484 DAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWEEVNTRIKKAG 543

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           Y P+T+YVL  ++ +++E  +QYHSEK+A+ F L+++  G TIRI KN+RICGDCH+  +
Sbjct: 544 YVPNTDYVLLHIKEQERETKLQYHSEKIALAFALINMPAGATIRIMKNIRICGDCHSAFR 603

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             +++  + IV+RD  R+HHF +G+CSCGDYW
Sbjct: 604 YVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 148/303 (48%), Gaps = 11/303 (3%)

Query: 52  QRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Q D+P  A+  +  M     R    T+   +K   A       + +H   +    + + +
Sbjct: 140 QNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVY 199

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF--MLR 168
           + + LL+M+ +   ++ A  +FD +  +N VSW  +I+ +  A+  D    L+ F  M R
Sbjct: 200 VGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGF--ARKGDGETTLMKFAEMQR 257

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
            G     FTYS+V  A   +  L Q   +H  +IK G +   FV + ++ +YAK G + +
Sbjct: 258 NGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVD 317

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VF+ +  RDLV WN+++  FAQ     EA+  ++ +++ G   +Q T  SVL AC+ 
Sbjct: 318 ARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSH 377

Query: 286 LALLELGTQVHVHVLKYDHDLILNN--ALLDMYCKCGSLEDAM-SVFSRMIQKDVISWST 342
             L++ G Q    +  Y+ +  +++  + +D+  + G L++A+  VF   ++     W  
Sbjct: 378 GGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGA 437

Query: 343 MIS 345
           ++ 
Sbjct: 438 LLG 440



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 108/237 (45%), Gaps = 30/237 (12%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           F  + D    +     MQ +G  A   TY+ +        A+E+ + VH H++  G +  
Sbjct: 239 FARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLT 298

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F+ N +L M+ K   + +A+ +FD++ +R++V+W TM++A+    +  +A+     + +
Sbjct: 299 AFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRK 358

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVG-----------FESDVFVRSALIDIY 217
            G++ N  T+ +VL AC         H G++K G            E ++    + +D+ 
Sbjct: 359 YGIQLNQITFLSVLTACS--------HGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLL 410

Query: 218 AKLGELRNAECVFNEMPTRDL-VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
            + G L+ A     +MP      VW +++G          A  ++K  K   +AAD 
Sbjct: 411 GRAGLLKEALIFVFKMPMEPTAAVWGALLG----------ACRMHKNAKIGQYAADH 457


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 242/597 (40%), Positives = 366/597 (61%), Gaps = 6/597 (1%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111
           QR     ++A   M   G  A    Y   I  C+ R A+ E + VH  +++  + P  FL
Sbjct: 20  QRCFVAPLRAASGMALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFL 79

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV 171
              L+ M+V+   L++A+ + D+MPER+VVSWTTMIS Y   + + +AL+L I MLR G 
Sbjct: 80  GTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGC 139

Query: 172 RPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
            PN +T + VL +C    S+   +Q+H  ++K  FES +FV S+L+D+YAK   ++ A  
Sbjct: 140 IPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARR 199

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           VF+ +P RD+V   +II G+AQ    +EAL+L++++   G   +  T T+++ A +GLA 
Sbjct: 200 VFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLAS 259

Query: 289 LELGTQVHVHVLKYDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           L+ G QVH  +L+ +      L N+L+DMY KCG L  +  VF  M+++ V+SW+ M+ G
Sbjct: 260 LDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMG 319

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
             ++G   E + LF+ +    +KP+ +T++ VL  CSH G V++G + F ++ K      
Sbjct: 320 YGRHGLGHEVISLFKDLH-KEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALL 378

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
              HY C+IDLLGR+G+L++A+ LI  MP+E     W +LLGAC+VH N  +    A+K+
Sbjct: 379 HTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKL 438

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
           L ++P++ G Y++LSNIYA +  W +V +VRK M  + +TKEPG SWI ++K IH F+ +
Sbjct: 439 LEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSS 498

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           +  HP    IN  +K +   +   G+ PD + VL D++ EQKE  +  HSEKLAI FGLM
Sbjct: 499 ERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLM 558

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +   G TIR+ KNLRIC DCH FAK  +K+  + I +RD  R+H    GNC+CGDYW
Sbjct: 559 NTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/627 (37%), Positives = 361/627 (57%), Gaps = 40/627 (6%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           + +     M  +GV+ D +  + ++  C     ++  K +H   +  G   + F+   L+
Sbjct: 326 KGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALV 385

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           N++     + EAQ +FD MP RNVV+W ++ S Y +     K L +   M+  GV+P++ 
Sbjct: 386 NLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLV 445

Query: 177 TYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T  ++L AC  L  L+    +H   ++ G   DVFV +AL+ +YAK   +R A+ VF+ +
Sbjct: 446 TMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLI 505

Query: 234 PTRDLVVWNSI-----------------------------------IGGFAQNSDVDEAL 258
           P R++  WN I                                   IGG  +NS ++EA+
Sbjct: 506 PHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAM 565

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMY 316
            ++++M+  GF  D++T+ S+LRAC+    L +G ++H +V ++  D DL   NAL+DMY
Sbjct: 566 EIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMY 625

Query: 317 CKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIV 376
            KCG L  + +VF  M  KDV SW+TMI     +G  +EAL LFE M +S +KP+  T  
Sbjct: 626 AKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFT 685

Query: 377 GVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY 436
            VL ACSH+  VE+G   F SM + + ++P  EHY+C++D+  RAG L+EA   I  MP 
Sbjct: 686 CVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPM 745

Query: 437 EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEV 496
           EP A+ W+A L  C+V++N +LA  +AKK+  +DP     Y+ L NI   ++ W E +++
Sbjct: 746 EPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKI 805

Query: 497 RKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDT 556
           RK M+ RGITK PGCSW  V  ++H F   D S+ + DKI   L  L  K+   GY PDT
Sbjct: 806 RKLMKERGITKTPGCSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGYKPDT 865

Query: 557 NYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKM 616
           +YVL D++ E+K +S+  HSEKLA+ FG+++L    TIR+ KNLRICGDCH   K  + +
Sbjct: 866 DYVLHDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSNV 925

Query: 617 ENQTIVIRDPIRYHHFQDGNCSCGDYW 643
              TIV+RD +R+HHF++GNCSC D+W
Sbjct: 926 VGVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/495 (26%), Positives = 233/495 (47%), Gaps = 46/495 (9%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           + +     M   GV+ D VT + ++  C     ++  K +H   L  G     F+ N L+
Sbjct: 225 KGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALV 284

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           N++     + EAQ +FD MP RNV++W ++ S Y +     K L +   M   GV+P+  
Sbjct: 285 NLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPM 344

Query: 177 TYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
             S++L AC  L  L+    +H   +K G   DVFV +AL+++YA    +R A+ VF+ M
Sbjct: 345 AMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLM 404

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           P R++V WNS+   +       + LN+++ M   G   D  T+ S+L AC+ L  L+ G 
Sbjct: 405 PHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGK 464

Query: 294 QVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSV----------------------- 328
            +H   +++    D+ + NALL +Y KC  + +A  V                       
Sbjct: 465 VIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNK 524

Query: 329 --------FSRM----IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIV 376
                   FS+M    ++ D I+WS +I G  +N   +EA+++F  M+    KP+  TI 
Sbjct: 525 EYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIY 584

Query: 377 GVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435
            +L ACS +  +  G   H    + +   D  R +   ++D+  + G L  +  +   MP
Sbjct: 585 SILRACSLSECLRMGKEIHCYVFRHWKDWDLARTN--ALVDMYAKCGGLSLSRNVFDMMP 642

Query: 436 YEPDAVTWRALLGACKVHRNTDLAICAAKK-ILNLDPQDPGTYILLSNIYANSQKWDEVA 494
            + D  +W  ++ A  +H N   A+   +K +L++   D  T+  + +  ++S   +E  
Sbjct: 643 IK-DVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGV 701

Query: 495 EVRKTMRARGITKEP 509
           ++  +M +R    EP
Sbjct: 702 QIFNSM-SRDHLVEP 715



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 180/332 (54%), Gaps = 5/332 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           + +     M  + V+A+ +T + ++  C     ++  K +H  V+  G   + F+ +  +
Sbjct: 124 QGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFV 183

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           N + K   + EAQ +FD MP R+VV+W ++ S Y +     K L +   M+ +GV+P+  
Sbjct: 184 NFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPV 243

Query: 177 TYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T S +L AC  L  L+    +H   +K G   +VFV +AL+++Y     +R A+ VF+ M
Sbjct: 244 TVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLM 303

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           P R+++ WNS+   +       + LN+++ M   G   D   ++S+L AC+ L  L+ G 
Sbjct: 304 PHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGK 363

Query: 294 QVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
            +H   +K+    D+ +  AL+++Y  C  + +A +VF  M  ++V++W+++ S     G
Sbjct: 364 TIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCG 423

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
           + Q+ L +F  M ++ +KP+ +T++ +L ACS
Sbjct: 424 FPQKGLNVFREMVLNGVKPDLVTMLSILHACS 455



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 205/407 (50%), Gaps = 14/407 (3%)

Query: 49  FCYQRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           F     LP  A+K   + +  G++ D   +  + K C A     + K  H+     G   
Sbjct: 14  FGIPHGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMS 73

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           +  + N  ++ + K   +E A+ +FD +  R+VV+W ++ + Y +     + L +   M 
Sbjct: 74  DVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMG 133

Query: 168 REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
              V+ N  T S++L  C  L  L   +++H  +++ G   DVFV SA ++ YAK   +R
Sbjct: 134 LNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVR 193

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
            A+ VF+ MP RD+V WNS+   +       + LN+++ M   G   D  T++ +L AC+
Sbjct: 194 EAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACS 253

Query: 285 GLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            L  L+ G  +H   LK+    ++ ++NAL+++Y  C  + +A +VF  M  ++VI+W++
Sbjct: 254 DLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNS 313

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF- 401
           + S     G+ Q+ L +F  M ++ +KP+ + +  +L ACS    ++ G    K++  F 
Sbjct: 314 LASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSG----KTIHGFA 369

Query: 402 --YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
             +G+       + +++L      ++EA  +   MP+  + VTW +L
Sbjct: 370 VKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHR-NVVTWNSL 415



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 163/308 (52%), Gaps = 16/308 (5%)

Query: 155 MNDKALELLIFMLREGVRPNMFTYSAVLRAC----DSLIILRQLHCGIIKVGFESDVFVR 210
           + ++A+++       G++P+   + AV +AC    D+L + +Q H    + G  SDV + 
Sbjct: 20  LPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKV-KQFHDDATRCGVMSDVSIG 78

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
           +A I  Y K   +  A  VF+++  RD+V WNS+   +       + LN++++M      
Sbjct: 79  NAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVK 138

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSV 328
           A+  T++S+L  C+ L  L+ G ++H  V+++    D+ +++A ++ Y KC  + +A +V
Sbjct: 139 ANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTV 198

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           F  M  +DV++W+++ S     G+ Q+ L +F  M +  +KP+ +T+  +L ACS    +
Sbjct: 199 FDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDL 258

Query: 389 EDGWNHFKSMKKF---YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           + G    K++  F   +G+       + +++L      ++EA  +   MP+  + +TW +
Sbjct: 259 KSG----KAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHR-NVITWNS 313

Query: 446 LLGACKVH 453
            L +C V+
Sbjct: 314 -LASCYVN 320



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 11/201 (5%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           +  AM+    MQ  G + D  T   +++ C     +   K +H +V     + +    N 
Sbjct: 561 IEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNA 620

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           L++M+ K   L  ++ +FD MP ++V SW TMI A        +AL L   ML   V+P+
Sbjct: 621 LVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPD 680

Query: 175 MFTYSAVLRACDSLIILRQLHCGI-IKVGFESDVFVR------SALIDIYAKLGELRNAE 227
             T++ VL AC   +++ +   G+ I      D  V       + ++DIY++ G L  A 
Sbjct: 681 SATFTCVLSACSHSMLVEE---GVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAY 737

Query: 228 CVFNEMPTRDL-VVWNSIIGG 247
                MP     + W + + G
Sbjct: 738 GFIQRMPMEPTAIAWKAFLAG 758


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 254/603 (42%), Positives = 368/603 (61%), Gaps = 15/603 (2%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D   A+     M+  G+  D  T++ +I  C   + V   + +H+   S GF+    + N
Sbjct: 120 DTLSALSLFGEMREMGLVMDGFTFSGVITACC--NHVGLIRQLHSLAFSSGFDSYVSVKN 177

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPE--RNVVSWTTMISAYCDAKMNDKALELLIFMLREGV 171
            LL  + K  +LEEA+++F+ M E  R+ VSW +MI AY   K   KAL L   M+  G 
Sbjct: 178 SLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGF 237

Query: 172 RPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGE-LRNAE 227
             +MFT ++VL     +  L    Q H   IK GF  +  V S LID+YAK G  +  + 
Sbjct: 238 EIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESR 297

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVD-EALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
            VF E+   DLVVWN++I G++QN ++  EAL  +++M+RAG+  D  +    + AC+ L
Sbjct: 298 KVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNL 357

Query: 287 ALLELGTQVHVHVLKYD---HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           +    G Q H   +K +   + + +NNAL+ MY KCG+L+DA  +F RM Q + ++ +++
Sbjct: 358 SSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSI 417

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           I+G AQ+G   E+L LFE M  + I P  IT+V +L AC+H G VE+G  +F  MK  +G
Sbjct: 418 IAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFG 477

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           I+P  EHYSCMIDLLGRAGKL EA +LI  MP+ P +  W ALLGAC+ + N +LA  AA
Sbjct: 478 IEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAA 537

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
            + L L+P +   YI+L+++Y+ ++KW+E A +RK MR RGI K+PGCSWIE+NK++H F
Sbjct: 538 NQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVF 597

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTN--YVLQDLEGEQ-KEDSIQYHSEKLA 580
              D+SHP+I +I+ +L  +  K+   GY PD    +V  D  GEQ KE  + +HSEKLA
Sbjct: 598 VAEDNSHPRIKEIHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLA 657

Query: 581 IVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
           + FGL+    G+ + + KNLRICGDCH   K  + +  + I +RD  R+H F+DG CSCG
Sbjct: 658 VAFGLLFTKHGEPLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRCSCG 717

Query: 641 DYW 643
           DYW
Sbjct: 718 DYW 720



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 193/370 (52%), Gaps = 22/370 (5%)

Query: 98  NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND 157
           +H  +   EP  F  N L+  + K SL+  A  LFDQ+P+ ++VS+ T+I+AY D     
Sbjct: 63  HHAFNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTL 122

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRA-CDSLIILRQLHCGIIKVGFESDVFVRSALIDI 216
            AL L   M   G+  + FT+S V+ A C+ + ++RQLH      GF+S V V+++L+  
Sbjct: 123 SALSLFGEMREMGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTY 182

Query: 217 YAKLGELRNAECVFNEM--PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           Y+K G L  AE VFN M    RD V WNS+I  + Q+    +AL LY+ M   GF  D  
Sbjct: 183 YSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMF 242

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGS-LEDAMSVFSR 331
           TL SVL   + +  L  G Q H   +K  ++ +  + + L+DMY KCG+ + ++  VF  
Sbjct: 243 TLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEE 302

Query: 332 MIQKDVISWSTMISGLAQNG-YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
           +   D++ W+TMISG +QN   S EAL+ F  M+ +   P+  + V  + ACS+      
Sbjct: 303 ICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQ 362

Query: 391 GWNHFKSMKKFYGIDPGREHYS-------CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
           G       K+F+ +    E  S        ++ +  + G LQ+A KL   MP + + VT 
Sbjct: 363 G-------KQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMP-QHNTVTL 414

Query: 444 RALLGACKVH 453
            +++     H
Sbjct: 415 NSIIAGYAQH 424



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 6/166 (3%)

Query: 291 LGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
           L T  H     ++ ++   NAL+  Y K   +  A  +F ++ Q D++S++T+I+  A  
Sbjct: 59  LTTAHHAFNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADR 118

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFA-CSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           G +  AL LF  M+   +  +  T  GV+ A C+H G +        S+    G D    
Sbjct: 119 GDTLSALSLFGEMREMGLVMDGFTFSGVITACCNHVGLIR----QLHSLAFSSGFDSYVS 174

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYE-PDAVTWRALLGACKVHR 454
             + ++    + G L+EA  + + M  E  D V+W +++ A   H+
Sbjct: 175 VKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHK 220


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/593 (40%), Positives = 367/593 (61%), Gaps = 7/593 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGG-FEPETFLVNIL 115
           R ++    M   GV  D  T   +   C     +   K++H++ +     + E    N L
Sbjct: 335 RGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTL 394

Query: 116 LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
           L+M+ K   L  A  +F++M E+ VVSWT+MI+ Y    ++D A++L   M   GV P++
Sbjct: 395 LDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDV 454

Query: 176 FTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           +  +++L AC    +L   + +H  I +   E++ FV +AL D+YAK G +++A  VF+ 
Sbjct: 455 YAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSH 514

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           M  +D++ WN++IGG+ +NS  +EAL L+  M+R     D +T+  +L AC  LA L+ G
Sbjct: 515 MKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKG 573

Query: 293 TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
            ++H + L+  Y  D  + NA++DMY KCG L  A S+F  +  KD++SW+ MI+G   +
Sbjct: 574 REIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMH 633

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
           GY  EA+  F  M+++ I+P+ ++ + +L+ACSH+G +++GW  F  MKK   I+P  EH
Sbjct: 634 GYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEH 693

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
           Y+CM+DLL R G L +A K I  MP +PDA  W ALL  C++H +  LA   A++I  L+
Sbjct: 694 YACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELE 753

Query: 471 PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSH 530
           P++ G Y+LL+NIYA ++KW+EV ++RK +  RG+ K PGCSWIE+  +I+ F   D S 
Sbjct: 754 PENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSK 813

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           PQ  KI   LK L  K+   GY+P T Y L + +  +KE ++  HSEKLA+ FG+++L  
Sbjct: 814 PQAKKIELLLKRLRSKMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMAFGMLNLPP 873

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GKTIR+ KNLR+CGDCH  AK  +K  ++ I++RD  R+HHF+DG+CSC  YW
Sbjct: 874 GKTIRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 137/427 (32%), Positives = 225/427 (52%), Gaps = 12/427 (2%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G++ +S T++ ++KC  A   VEE + VH  +   GF     +VN L++ +     +  A
Sbjct: 246 GIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCA 305

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC--- 185
           Q LFD++ +R+V+SW +MIS Y    ++D+ +E+ I ML  GV  ++ T   V  AC   
Sbjct: 306 QKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANI 365

Query: 186 DSLIILRQLHCGIIKVG-FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
            +L++ + LH   IK    + +V   + L+D+Y+K G+L +A  VF  M  + +V W S+
Sbjct: 366 GTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSM 425

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           I G+ +    D A+ L+  MK  G   D   +TS+L AC     L+ G  VH ++ +   
Sbjct: 426 ITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNL 485

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           + +  ++NAL DMY KCGS++DA  VFS M +KDVISW+TMI G  +N    EAL LF  
Sbjct: 486 ETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAE 545

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRA 421
           M+    KP+  T+  +L AC+    ++ G   H  +++  Y  D  +   + ++D+  + 
Sbjct: 546 MQ-RESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSED--KYVTNAVVDMYVKC 602

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           G L  A  L   +P   D V+W  ++    +H     AI    + + +   +P     +S
Sbjct: 603 GLLVLARSLFDMIP-NKDLVSWTVMIAGYGMHGYGSEAINTFNQ-MRMTGIEPDEVSFIS 660

Query: 482 NIYANSQ 488
            +YA S 
Sbjct: 661 ILYACSH 667



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 120/407 (29%), Positives = 218/407 (53%), Gaps = 10/407 (2%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           FC   DL  AM+ + + Q      D   Y  +++ C  R ++ + + V + + S G   +
Sbjct: 127 FCEVGDLKNAMELLCSSQNSNF--DLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMID 184

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             L   L+ M+VK   L+E +++FD++ E  +  W  MIS Y  +    +++ L   ML 
Sbjct: 185 GILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLE 244

Query: 169 EGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
            G++PN +T+S++L+   ++  +   RQ+H  I K+GF S   V ++LI  Y    ++R 
Sbjct: 245 LGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRC 304

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A+ +F+E+  RD++ WNS+I G+ +N   D  + ++ +M   G   D +T+ +V  AC  
Sbjct: 305 AQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACAN 364

Query: 286 LALLELGTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
           +  L LG  +H + +K    D ++  NN LLDMY KCG L  A+ VF RM +K V+SW++
Sbjct: 365 IGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTS 424

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           MI+G  + G S  A+KLF+ MK   + P+   +  +L AC+  G ++ G      +++  
Sbjct: 425 MITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRE-N 483

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            ++      + + D+  + G +++A  +   M  + D ++W  ++G 
Sbjct: 484 NLETNSFVSNALTDMYAKCGSMKDAHDVFSHMK-KKDVISWNTMIGG 529



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 107/226 (47%), Gaps = 21/226 (9%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111
           +  LP     + A      + D  T A ++  C +  A+++ + +H + L  G+  + ++
Sbjct: 532 KNSLPNEALTLFAEMQRESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYV 591

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV 171
            N +++M+VK  LL  A+ LFD +P +++VSWT MI+ Y       +A+     M   G+
Sbjct: 592 TNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGI 651

Query: 172 RPNMFTYSAVLRACDSLIILRQLHCGIIKVGF------------ESDVFVRSALIDIYAK 219
            P+  ++ ++L AC         H G++  G+            E ++   + ++D+ A+
Sbjct: 652 EPDEVSFISILYACS--------HSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLAR 703

Query: 220 LGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRM 264
            G L  A      MP + D  +W +++ G   + DV  A  + +R+
Sbjct: 704 TGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERI 749


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/603 (39%), Positives = 372/603 (61%), Gaps = 19/603 (3%)

Query: 50   CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL---VHNHVLSGGFE 106
            C  RDL R           G++ D  T A +++ C      E   L   VH + +  G  
Sbjct: 981  CTFRDLLR----------DGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGII 1030

Query: 107  PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
             ++F+   L++++ K   ++EA+ L     + ++ SW  ++  Y  +  + KALE    M
Sbjct: 1031 NDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLM 1090

Query: 167  LREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
               G+  +  T +  ++A   LI L+Q   +    IK+GF +D++V S ++D+Y K G++
Sbjct: 1091 HEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDM 1150

Query: 224  RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
             NA  +F E+   D V W ++I G+ +N D D AL++Y  M+ +G   D+ T  ++++A 
Sbjct: 1151 PNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKAS 1210

Query: 284  TGLALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
            + L  LE G Q+H +V+K D+ L   +  +L+DMYCKCGS++DA  VF +M  + V+ W+
Sbjct: 1211 SCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWN 1270

Query: 342  TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
             M+ GLAQ+G+  EAL LF +M+ + I+P+ +T +GVL ACSH+G   + + +F +M K 
Sbjct: 1271 AMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKT 1330

Query: 402  YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
            YGI P  EHYSC++D LGRAG++QEA  +I  MP++  A  +RALLGAC+   + + A  
Sbjct: 1331 YGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKR 1390

Query: 462  AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIH 521
             A K+L LDP D   Y+LLSNIYA S++WD+V + R  M+ + + K+PG SWI+V  ++H
Sbjct: 1391 VADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVH 1450

Query: 522  AFNVADSSHPQIDKINKHLKHLIQKLVGVG-YAPDTNYVLQDLEGEQKEDSIQYHSEKLA 580
             F V D SHPQ   I + ++ L++++   G Y PDT++ L D+E E+KE ++ YHSEKLA
Sbjct: 1451 LFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLA 1510

Query: 581  IVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
            I FGL+S     TIR+ KNLR+CGDCH+  K  +K+  + IV+RD  R+HHF++G CSCG
Sbjct: 1511 IAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCG 1570

Query: 641  DYW 643
            DYW
Sbjct: 1571 DYW 1573



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 138/507 (27%), Positives = 257/507 (50%), Gaps = 23/507 (4%)

Query: 15   SSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADS 74
            + Q + +++ + P     N    N        T F +   +  A+     +    +  DS
Sbjct: 840  AEQVKAYAMKMFPFDQGSNIFAWNKK-----LTEFLHAGQIVAAIDCFKTLLRSTIGHDS 894

Query: 75   VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ 134
            VT   ++   +    ++  + +H  V+   F P   + N L+NM+ K  ++  A+  F  
Sbjct: 895  VTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFIN 954

Query: 135  MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS------L 188
             PE +++SW TMIS+Y    +  +A+     +LR+G++P+ FT ++VLRAC +       
Sbjct: 955  SPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYF 1014

Query: 189  IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
             +  Q+H   IK G  +D FV +ALID+Y+K G++  AE + +     DL  WN+I+ G+
Sbjct: 1015 TLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGY 1074

Query: 249  AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDL 306
             +++   +AL  +  M   G   D+ TL + ++A   L  L+ G Q+  + +K  +++DL
Sbjct: 1075 IKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDL 1134

Query: 307  ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
             +++ +LDMY KCG + +A+ +F  + + D ++W+TMISG  +NG    AL ++  M+VS
Sbjct: 1135 WVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVS 1194

Query: 367  RIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHY--SCMIDLLGRAGK 423
             ++P+  T   ++ A S    +E G   H   +K  Y +D    H+  + ++D+  + G 
Sbjct: 1195 GVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLD----HFVGTSLVDMYCKCGS 1250

Query: 424  LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ-DPGTYILLSN 482
            +Q+A ++  +M      V W A+L     H + D A+   + + +   Q D  T+I + +
Sbjct: 1251 VQDAYRVFRKMDVRK-VVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLS 1309

Query: 483  IYANSQKWDEVAEVRKTM-RARGITKE 508
              ++S  + E  +    M +  GIT E
Sbjct: 1310 ACSHSGLFSEAYKYFDAMFKTYGITPE 1336



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 171/371 (46%), Gaps = 45/371 (12%)

Query: 90   VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
            V+ ++ VH + +  GFE + F+   L+N++ K+ L+ +A++LFD+MPER+ V W  M+ A
Sbjct: 733  VQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKA 792

Query: 150  YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFV 209
            Y +    D+AL       R G  P+                   LHC I   G  SDV  
Sbjct: 793  YVENSFQDEALRFFSAFHRSGFXPD----------------FSNLHCVI--GGVNSDV-- 832

Query: 210  RSALIDIYAKLGELRNAECV-------FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
                          R+AE V       F      ++  WN  +  F     +  A++ +K
Sbjct: 833  ---------SNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFK 883

Query: 263  RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNALLDMYCKCG 320
             + R+    D  TL  +L A  G   L+LG Q+H  V+K     +  ++N+L++MY K G
Sbjct: 884  TLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAG 943

Query: 321  SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
             +  A   F    + D+ISW+TMIS  AQN    EA+  F  +    +KP+  T+  VL 
Sbjct: 944  VVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLR 1003

Query: 381  ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS----CMIDLLGRAGKLQEAVKLIHEMPY 436
            ACS     E  +    S    Y I  G  + S     +IDL  + GK+ EA  L+H   Y
Sbjct: 1004 ACSTGD--EGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHG-KY 1060

Query: 437  EPDAVTWRALL 447
            + D  +W A++
Sbjct: 1061 DFDLASWNAIM 1071



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 187/415 (45%), Gaps = 40/415 (9%)

Query: 82   KCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVV 141
            +  +A   ++  K  H  +++ G  P+ +L N L+ M+ K   L  A+ +FD+  +R++V
Sbjct: 619  RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 142  SWTTMISAYCDAKMNDKALE------LLIFMLREG----VRPNMFTYSAVLRACDSLIIL 191
            +W ++++AY  A+  D + E       L  +LRE      R  +     +      + + 
Sbjct: 679  TWNSILAAY--AQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVS 736

Query: 192  RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
              +H   +K+GFE D+FV  AL++IY K G +  A  +F++MP RD V+WN ++  + +N
Sbjct: 737  ETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVEN 796

Query: 252  SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNA 311
            S  DEAL  +    R+GF  D S L  V+      + +    + H   +K          
Sbjct: 797  SFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVN--SDVSNNRKRHAEQVK---------- 844

Query: 312  LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
                         AM +F      ++ +W+  ++     G    A+  F+++  S I  +
Sbjct: 845  -----------AYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHD 893

Query: 372  YITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
             +T+V +L A   A  ++ G   H   +K  +   P     + ++++  +AG +  A K 
Sbjct: 894  SVTLVIILSAAVGADDLDLGEQIHALVIKSSFA--PVVPVSNSLMNMYSKAGVVYAAEKT 951

Query: 431  IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
                P E D ++W  ++ +   +     AIC  + +L  D   P  + L S + A
Sbjct: 952  FINSP-ELDLISWNTMISSYAQNNLEMEAICTFRDLLR-DGLKPDQFTLASVLRA 1004


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/603 (39%), Positives = 372/603 (61%), Gaps = 19/603 (3%)

Query: 50   CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL---VHNHVLSGGFE 106
            C  RDL R           G++ D  T A +++ C      E   L   VH + +  G  
Sbjct: 981  CTFRDLLR----------DGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGII 1030

Query: 107  PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
             ++F+   L++++ K   ++EA+ L     + ++ SW  ++  Y  +  + KALE    M
Sbjct: 1031 NDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLM 1090

Query: 167  LREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
               G+  +  T +  ++A   LI L+Q   +    IK+GF +D++V S ++D+Y K G++
Sbjct: 1091 HEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDM 1150

Query: 224  RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
             NA  +F E+   D V W ++I G+ +N D D AL++Y  M+ +G   D+ T  ++++A 
Sbjct: 1151 PNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKAS 1210

Query: 284  TGLALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
            + L  LE G Q+H +V+K D+ L   +  +L+DMYCKCGS++DA  VF +M  + V+ W+
Sbjct: 1211 SCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWN 1270

Query: 342  TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
             M+ GLAQ+G+  EAL LF +M+ + I+P+ +T +GVL ACSH+G   + + +F +M K 
Sbjct: 1271 AMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKT 1330

Query: 402  YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
            YGI P  EHYSC++D LGRAG++QEA  +I  MP++  A  +RALLGAC+   + + A  
Sbjct: 1331 YGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKR 1390

Query: 462  AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIH 521
             A K+L LDP D   Y+LLSNIYA S++WD+V + R  M+ + + K+PG SWI+V  ++H
Sbjct: 1391 VADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVH 1450

Query: 522  AFNVADSSHPQIDKINKHLKHLIQKLVGVG-YAPDTNYVLQDLEGEQKEDSIQYHSEKLA 580
             F V D SHPQ   I + ++ L++++   G Y PDT++ L D+E E+KE ++ YHSEKLA
Sbjct: 1451 LFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLA 1510

Query: 581  IVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
            I FGL+S     TIR+ KNLR+CGDCH+  K  +K+  + IV+RD  R+HHF++G CSCG
Sbjct: 1511 IAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCG 1570

Query: 641  DYW 643
            DYW
Sbjct: 1571 DYW 1573



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 138/507 (27%), Positives = 257/507 (50%), Gaps = 23/507 (4%)

Query: 15   SSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADS 74
            + Q + +++ + P     N    N        T F +   +  A+     +    +  DS
Sbjct: 840  AEQVKAYAMKMFPFDQGSNIFAWNKK-----LTEFLHAGQIVAAIDCFKTLLRSTIGHDS 894

Query: 75   VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ 134
            VT   ++   +    ++  + +H  V+   F P   + N L+NM+ K  ++  A+  F  
Sbjct: 895  VTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFIN 954

Query: 135  MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS------L 188
             PE +++SW TMIS+Y    +  +A+     +LR+G++P+ FT ++VLRAC +       
Sbjct: 955  SPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYF 1014

Query: 189  IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
             +  Q+H   IK G  +D FV +ALID+Y+K G++  AE + +     DL  WN+I+ G+
Sbjct: 1015 TLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGY 1074

Query: 249  AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDL 306
             +++   +AL  +  M   G   D+ TL + ++A   L  L+ G Q+  + +K  +++DL
Sbjct: 1075 IKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDL 1134

Query: 307  ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
             +++ +LDMY KCG + +A+ +F  + + D ++W+TMISG  +NG    AL ++  M+VS
Sbjct: 1135 WVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVS 1194

Query: 367  RIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHY--SCMIDLLGRAGK 423
             ++P+  T   ++ A S    +E G   H   +K  Y +D    H+  + ++D+  + G 
Sbjct: 1195 GVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLD----HFVGTSLVDMYCKCGS 1250

Query: 424  LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ-DPGTYILLSN 482
            +Q+A ++  +M      V W A+L     H + D A+   + + +   Q D  T+I + +
Sbjct: 1251 VQDAYRVFRKMDVRK-VVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLS 1309

Query: 483  IYANSQKWDEVAEVRKTM-RARGITKE 508
              ++S  + E  +    M +  GIT E
Sbjct: 1310 ACSHSGLFSEAYKYFDAMFKTYGITPE 1336



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 171/371 (46%), Gaps = 45/371 (12%)

Query: 90   VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
            V+ ++ VH + +  GFE + F+   L+N++ K+ L+ +A++LFD+MPER+ V W  M+ A
Sbjct: 733  VQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKA 792

Query: 150  YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFV 209
            Y +    D+AL       R G  P+                   LHC I   G  SDV  
Sbjct: 793  YVENSFQDEALRFFSAFHRSGFFPD----------------FSNLHCVI--GGVNSDV-- 832

Query: 210  RSALIDIYAKLGELRNAECV-------FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
                          R+AE V       F      ++  WN  +  F     +  A++ +K
Sbjct: 833  ---------SNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFK 883

Query: 263  RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNALLDMYCKCG 320
             + R+    D  TL  +L A  G   L+LG Q+H  V+K     +  ++N+L++MY K G
Sbjct: 884  TLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAG 943

Query: 321  SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
             +  A   F    + D+ISW+TMIS  AQN    EA+  F  +    +KP+  T+  VL 
Sbjct: 944  VVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLR 1003

Query: 381  ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS----CMIDLLGRAGKLQEAVKLIHEMPY 436
            ACS     E  +    S    Y I  G  + S     +IDL  + GK+ EA  L+H   Y
Sbjct: 1004 ACSTGD--EGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHG-KY 1060

Query: 437  EPDAVTWRALL 447
            + D  +W A++
Sbjct: 1061 DFDLASWNAIM 1071



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 187/415 (45%), Gaps = 40/415 (9%)

Query: 82   KCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVV 141
            +  +A   ++  K  H  +++ G  P+ +L N L+ M+ K   L  A+ +FD+  +R++V
Sbjct: 619  RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 142  SWTTMISAYCDAKMNDKALE------LLIFMLREG----VRPNMFTYSAVLRACDSLIIL 191
            +W ++++AY  A+  D + E       L  +LRE      R  +     +      + + 
Sbjct: 679  TWNSILAAY--AQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVS 736

Query: 192  RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
              +H   +K+GFE D+FV  AL++IY K G +  A  +F++MP RD V+WN ++  + +N
Sbjct: 737  ETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVEN 796

Query: 252  SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNA 311
            S  DEAL  +    R+GF  D S L  V+      + +    + H   +K          
Sbjct: 797  SFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVN--SDVSNNRKRHAEQVK---------- 844

Query: 312  LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
                         AM +F      ++ +W+  ++     G    A+  F+++  S I  +
Sbjct: 845  -----------AYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHD 893

Query: 372  YITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
             +T+V +L A   A  ++ G   H   +K  +   P     + ++++  +AG +  A K 
Sbjct: 894  SVTLVIILSAAVGADDLDLGEQIHALVIKSSFA--PVVPVSNSLMNMYSKAGVVYAAEKT 951

Query: 431  IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
                P E D ++W  ++ +   +     AIC  + +L  D   P  + L S + A
Sbjct: 952  FINSP-ELDLISWNTMISSYAQNNLEMEAICTFRDLLR-DGLKPDQFTLASVLRA 1004


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/597 (39%), Positives = 356/597 (59%), Gaps = 5/597 (0%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111
           Q     ++K  H M+      +  T   L+        ++  + +H  V   GFE +  +
Sbjct: 393 QGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAV 452

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV 171
            N L+ M++K   + +   L++ M +R+++SW   +S   D  M D+ L +   ML EG 
Sbjct: 453 SNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGF 512

Query: 172 RPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
            PNM+T+ ++L +C  L  +   RQ+H  IIK   + + FV +ALID+YAK   L +A+ 
Sbjct: 513 IPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADV 572

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
            FN +  RDL  W  II  +AQ +  ++ALN +++M++ G   ++ TL   L  C+ LA 
Sbjct: 573 AFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLAS 632

Query: 289 LELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           LE G Q+H  V K  H  D+ + +AL+DMY KCG +E+A ++F  +I++D I+W+T+I G
Sbjct: 633 LEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICG 692

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
            AQNG   +AL  F  M    I P+ +T  G+L ACSH G VE+G  HF SM + +GI P
Sbjct: 693 YAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISP 752

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
             +H +CM+D+LGR GK  E    I +M    +A+ W  +LGA K+H N  L   AA K+
Sbjct: 753 TVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKL 812

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
             L P++  +YILLSNI+A   +WD+V  VR  M ++G+ KEPGCSW+E N Q+H F   
Sbjct: 813 FELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSH 872

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D SHPQI +I+  L  L ++L  + Y P T YVL ++   +K++++++HSE+LA+ F L+
Sbjct: 873 DYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALI 932

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           S +  K IRI KNLRIC DCH   K  + + NQ IV+RD  R+HHF++G CSC D+W
Sbjct: 933 STSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSCNDFW 989



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 117/378 (30%), Positives = 204/378 (53%), Gaps = 7/378 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y+ +++ C ++ ++  AK +H  ++     P++ L   L+N++ K      A+++  +MP
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQ 193
           +R+VVSWT +I         + ++ L   M  EG+ PN FT +  L+AC    +L + +Q
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H    K+G   D+FV SAL+D+YAK GE+  A  +F  MP ++ V WN ++ G+AQ  D
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNA 311
           V   L L+  M       ++ TLT+VL+ C     L+ G  +H  ++K  Y+ +  +   
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+DMY KCG   DA+ VF  + + D++ WS +I+ L Q G S+E++KLF  M++    PN
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPN 414

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
             TI  +L A ++ G ++ G +    + K YG +      + ++ +  + G + +  KL 
Sbjct: 415 QYTICSLLSAATNTGNLQYGQSIHACVWK-YGFETDVAVSNALVTMYMKNGCVHDGTKLY 473

Query: 432 HEMPYEPDAVTWRALLGA 449
             M  + D ++W A L  
Sbjct: 474 ESM-VDRDLISWNAYLSG 490



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 207/420 (49%), Gaps = 7/420 (1%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D+   +K   +M    V+ +  T   ++K C     +++ +++H+ ++  G+E   F+  
Sbjct: 294 DVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGC 353

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L++M+ K  L  +A  +F  + + ++V W+ +I+       ++++++L   M      P
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLP 413

Query: 174 NMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           N +T  ++L A     +L   + +H  + K GFE+DV V +AL+ +Y K G + +   ++
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLY 473

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
             M  RDL+ WN+ + G       D  L ++  M   GF  +  T  S+L +C+ L  + 
Sbjct: 474 ESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVH 533

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G QVH H++K   D +  +  AL+DMY KC  LEDA   F+R+  +D+ +W+ +I+  A
Sbjct: 534 YGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYA 593

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           Q    ++AL  F  M+   +KPN  T+ G L  CS    +E G     SM    G     
Sbjct: 594 QTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG-QQLHSMVFKSGHVSDM 652

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
              S ++D+  + G ++EA  L  E     D + W  ++     +   + A+ A + +L+
Sbjct: 653 FVGSALVDMYAKCGCMEEAEALF-EALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLD 711



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 166/324 (51%), Gaps = 5/324 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  G+  +  T A  +K C    A++  K +H      G   + F+ + L++++ K   
Sbjct: 204 MQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGE 263

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +E A  +F  MPE+N V+W  +++ Y         L+L   M+   V+ N FT + VL+ 
Sbjct: 264 IELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKG 323

Query: 185 CDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C +   L+Q   +H  IIK G+E + F+   L+D+Y+K G   +A  VF  +   D+VVW
Sbjct: 324 CANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVW 383

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           +++I    Q    +E++ L+  M+      +Q T+ S+L A T    L+ G  +H  V K
Sbjct: 384 SALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWK 443

Query: 302 Y--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
           Y  + D+ ++NAL+ MY K G + D   ++  M+ +D+ISW+  +SGL   G     L +
Sbjct: 444 YGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTI 503

Query: 360 FESMKVSRIKPNYITIVGVLFACS 383
           F  M      PN  T + +L +CS
Sbjct: 504 FYHMLEEGFIPNMYTFISILGSCS 527



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 102/214 (47%), Gaps = 21/214 (9%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           T +       +A+     MQ  GV+ +  T A  +  C +  ++E  + +H+ V   G  
Sbjct: 590 TNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHV 649

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
            + F+ + L++M+ K   +EEA+ LF+ +  R+ ++W T+I  Y      +KAL     M
Sbjct: 650 SDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMM 709

Query: 167 LREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFE------SDVFVR------SALI 214
           L EG+ P+  T++ +L AC         H G+++ G E       D  +       + ++
Sbjct: 710 LDEGISPDGVTFTGILSACS--------HQGLVEEGKEHFNSMYRDFGISPTVDHCACMV 761

Query: 215 DIYAKLGELRNAECVFNEMP-TRDLVVWNSIIGG 247
           DI  ++G+    E    +M  +++ ++W +++G 
Sbjct: 762 DILGRVGKFDELEDFIQKMQLSQNALIWETVLGA 795


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/601 (38%), Positives = 368/601 (61%), Gaps = 20/601 (3%)

Query: 50  CYQR--DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY +  +L ++ +    MQ  G+  +  TY  ++K C    A +  + +H  VL  GF+ 
Sbjct: 412 CYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQF 471

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
             ++ ++L++M+ K   L+ A  +F ++ E +VVSWT MI+ Y       +AL L   M 
Sbjct: 472 NVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQ 531

Query: 168 REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
            +G++ +   +++ + AC  +  L   RQ+H      G+  D+ + +AL+ +YA+ G++R
Sbjct: 532 DQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVR 591

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
            A   F+++  +D V WNS++ GFAQ+   +EALN++ +M +AG   +  T  S + A  
Sbjct: 592 EAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAA 651

Query: 285 GLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            +A + +G Q+H  + K  YD +  ++NAL+ +Y KCG+++D             ISW++
Sbjct: 652 NIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD-------------ISWNS 698

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           MI+G +Q+G   EALKLFE MK   + PN++T VGVL ACSH G V++G ++F+SM + +
Sbjct: 699 MITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAH 758

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            + P  EHY+C++DLLGR+G L  A + + EMP +PDA+ WR LL AC VH+N D+   A
Sbjct: 759 NLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFA 818

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A  +L L+P+D  TY+L+SN+YA S KWD     R+ M+ RG+ KEPG SW+EV+  +HA
Sbjct: 819 ASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHA 878

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F   D +HP+ D I ++L+ L  +    GY P  N +L D E  QK+ +   HSE+LAI 
Sbjct: 879 FFAGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIA 938

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           FGL+SLT    + + KNLR+C DCH + K  +K+ ++ I++RD  R+HHF+ G+CSC DY
Sbjct: 939 FGLLSLTSSTPLYVFKNLRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDY 998

Query: 643 W 643
           W
Sbjct: 999 W 999



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 131/472 (27%), Positives = 223/472 (47%), Gaps = 64/472 (13%)

Query: 62  MHAMQCHGVRADSVTYAELIKCCL-ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHV 120
           +H M+ HGVRA+S T+  L++ CL +R   +  KL+                    + ++
Sbjct: 69  LHLMEQHGVRANSQTFLWLLEGCLNSRSFYDGLKLI--------------------DFYL 108

Query: 121 KFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSA 180
            F  L  A  +FD+MP R++  W  + + +   ++  +   L   ML + V  +   ++ 
Sbjct: 109 AFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAV 168

Query: 181 VLRACD----SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           VLR C     S   + Q+H   I  GFES  F+ + LID+Y K G L +A+ VF  +  R
Sbjct: 169 VLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKAR 228

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           D V W ++I G +QN   +EA+ L+ ++              VL ACT +   E G Q+H
Sbjct: 229 DSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQLH 274

Query: 297 VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
             VLK  +  +  + NAL+ +Y + G+L  A  +F  M Q+D +S++++ISGLAQ GY  
Sbjct: 275 GLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYIN 334

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414
            AL LF+ M +   KP+ +T+  +L AC+  G + +G   F S     G+         +
Sbjct: 335 RALALFKKMNLDCQKPDCVTVASLLSACASVGALPNG-KQFHSYAIKAGMTSDIVVEGSL 393

Query: 415 IDL----------------LGRAGKLQEAVKLIHEMPYE---PDAVTWRALLGACKVHRN 455
           +DL                 G+   L ++ ++  +M  E   P+  T+ ++L  C     
Sbjct: 394 LDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGA 453

Query: 456 TDLAICAAKKILNLDPQDPGTYI--LLSNIYANSQKWDEVAEVRKTMRARGI 505
           TDL      ++L    Q    Y+  +L ++YA   K D   ++ + ++   +
Sbjct: 454 TDLGEQIHTQVLKTGFQ-FNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDV 504



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 192/415 (46%), Gaps = 39/415 (9%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARH-AVEEAKLVHNHVLSGG 104
           F  F  +R + R       M    V  D   +A +++ C     +    + +H   ++ G
Sbjct: 135 FNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSG 194

Query: 105 FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
           FE  TF+ N L++++ K   L  A+ +F+ +  R+ VSW  MIS        ++A+ L  
Sbjct: 195 FESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFC 254

Query: 165 FMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
                           VL AC  +      +QLH  ++K GF S+ +V +AL+ +Y++ G
Sbjct: 255 --------------QIVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSG 300

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
            L +AE +F+ M  RD V +NS+I G AQ   ++ AL L+K+M       D  T+ S+L 
Sbjct: 301 NLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLS 360

Query: 282 ACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
           AC  +  L  G Q H + +K     D+++  +LLD+Y KC  ++ A   F    Q D ++
Sbjct: 361 ACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLN 420

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSM 398
                          ++ ++F  M++  I PN  T   +L  C+  G  + G   H + +
Sbjct: 421 ---------------KSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVL 465

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           K   G        S +ID+  + GKL  A+K+   +  E D V+W A++     H
Sbjct: 466 KT--GFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLK-ENDVVSWTAMIAGYTQH 517



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 144/328 (43%), Gaps = 48/328 (14%)

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALID 215
           N   +  L  M + GVR N  T+  +L  C   +  R  + G+              LID
Sbjct: 62  NASGIGYLHLMEQHGVRANSQTFLWLLEGC---LNSRSFYDGL-------------KLID 105

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
            Y   G+L  A  VF+EMP R L  WN I   F     +     L++RM       D+  
Sbjct: 106 FYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERI 165

Query: 276 LTSVLRACTGLAL-LELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
              VLR C+G A+      Q+H   +   ++    + N L+D+Y K G L  A  VF  +
Sbjct: 166 FAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENL 225

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
             +D +SW  MISGL+QNGY +EA+ LF  +              VL AC+   F E G 
Sbjct: 226 KARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFG- 270

Query: 393 NHFKSMKKFYGI----DPGREHYSC--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
                 K+ +G+        E Y C  ++ L  R+G L  A ++ H M  + D V++ +L
Sbjct: 271 ------KQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMS-QRDRVSYNSL 323

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDP 474
           +         + A+   KK +NLD Q P
Sbjct: 324 ISGLAQQGYINRALALFKK-MNLDCQKP 350


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 243/631 (38%), Positives = 375/631 (59%), Gaps = 38/631 (6%)

Query: 50  CYQRDLPRAMKAMHAMQCHGV-RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           CY   +  A+K  ++M   GV   + +T++ ++    ++  V+  + +H  ++  GF   
Sbjct: 114 CYG-SVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAY 172

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVV--------------------------- 141
            F+ + L++M+ K  L+  A  +FD++ ERNVV                           
Sbjct: 173 VFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKE 232

Query: 142 ----SWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---L 194
               SWTTMI+      +  +A++L   M +EG+  + +T+ +VL AC  L  L++   +
Sbjct: 233 RDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEI 292

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
           H  II+ G+  +VFV SAL+D+Y K   +R AE VF  M  +++V W +++ G+ QN   
Sbjct: 293 HTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFS 352

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNAL 312
           +EA+ ++  M+R G   D  TL SV+ +C  LA LE G Q H   L       + ++NAL
Sbjct: 353 EEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNAL 412

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           + +Y KCGS+ED+  +F  M  +D +SW+ ++SG AQ G + E + LFE M V  +KP+ 
Sbjct: 413 ITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDA 472

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           +T + VL ACS AG VE G  +F+SM K +GI P  +HY+CMIDL GRAG+L+EA   I+
Sbjct: 473 VTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFIN 532

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
           +MP+ PD++ W  LL +C+++ N ++   AA+ +L LDPQ+P  YILLS+IYA   KW  
Sbjct: 533 KMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSN 592

Query: 493 VAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGY 552
           VA++R+ MR +G  KEPG SWI+   +++ F+  D S P  D+I   L+ L  K++  GY
Sbjct: 593 VAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGY 652

Query: 553 APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
            PD + VL D+E  +K   + +HSEKLAI FGL+ +  G  IR+ KNLR+CGDCH   K 
Sbjct: 653 VPDASSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKY 712

Query: 613 TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +K+  + I++RD +R+H F+DG CSCGD+W
Sbjct: 713 ISKISQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 139/437 (31%), Positives = 225/437 (51%), Gaps = 75/437 (17%)

Query: 83  CCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVS 142
           CC  R+  + AK +H  ++     PETFL N L+N + K   +  A+ +FD+MP+ N  S
Sbjct: 15  CCETRNQTQ-AKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFS 73

Query: 143 WTTMISAYCDAKMNDKALELLIF---------------------------------MLRE 169
           W TM+SAY  +K  D +    IF                                 M+++
Sbjct: 74  WNTMLSAY--SKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKD 131

Query: 170 GV-RPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           GV   N  T+S +L    S   + + RQ+H  I+K GF + VFV S+L+D+YAK+G +  
Sbjct: 132 GVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSV 191

Query: 226 AECVFNE-------------------------------MPTRDLVVWNSIIGGFAQNSDV 254
           A  VF+E                               M  RD + W ++I G  QN   
Sbjct: 192 ASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLE 251

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNAL 312
            EA++L++ M++ G A DQ T  SVL AC GL  L+ G ++H  +++  Y+H++ + +AL
Sbjct: 252 AEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSAL 311

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           +DMYCKC S+  A +VF RM  K+V+SW+ M+ G  QNG+S+EA+++F  M+ + I+P+ 
Sbjct: 312 VDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDD 371

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
            T+  V+ +C++   +E+G   F       G+       + +I L G+ G ++++ +L  
Sbjct: 372 FTLGSVISSCANLASLEEG-AQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFD 430

Query: 433 EMPYEPDAVTWRALLGA 449
           EM +  D V+W AL+  
Sbjct: 431 EMSFR-DEVSWTALVSG 446


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/613 (38%), Positives = 365/613 (59%), Gaps = 34/613 (5%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   G   D   +  ++K C     +   + VH  ++  G   + +  N L+NM+ KF  
Sbjct: 97  MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 156

Query: 125 LEEAQV-----------------------------LFDQMPERNVVSWTTMISAYCDAKM 155
           LEE                                +F+ MP+R++VSW T+IS      M
Sbjct: 157 LEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGM 216

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSA 212
           ++ AL ++  M    +RP+ FT S+VL      + L   +++H   I+ G+++DVF+ S+
Sbjct: 217 HEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSS 276

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           LID+YAK   + ++  VF  +P  D + WNSII G  QN   DE L  +++M  A    +
Sbjct: 277 LIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPN 336

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFS 330
             + +S++ AC  L  L LG Q+H +++  ++D ++ + +AL+DMY KCG++  A  +F 
Sbjct: 337 HVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFD 396

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
           +M   D++SW+ MI G A +G++ +A+ LF+ M+V  +KPNY+  + VL ACSHAG V++
Sbjct: 397 KMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDE 456

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
            W +F SM + Y I PG EHY+ + DLLGR G+L+EA + I +M  EP    W  LL AC
Sbjct: 457 AWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAAC 516

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
           +VH+N +LA   +KK+  +DPQ+ G Y+LLSNIY+ + +W +  ++R  MR +G+ K+P 
Sbjct: 517 RVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPA 576

Query: 511 CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKED 570
           CSWIE+  ++HAF   D SHP  D+IN+ LK L++++   GY  DT  VL D+E EQK  
Sbjct: 577 CSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRY 636

Query: 571 SIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYH 630
            +  HSE+LAI FG++S   G TIR+ KNLR+C DCHT  K  +K+  + IV+RD  R+H
Sbjct: 637 LLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFH 696

Query: 631 HFQDGNCSCGDYW 643
           HF+DG CSCGD+W
Sbjct: 697 HFKDGKCSCGDFW 709



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 162/297 (54%), Gaps = 9/297 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+  +  M    +R DS T + ++        + + K +H + +  G++ + F+ + L++
Sbjct: 220 ALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLID 279

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K + ++++  +F  +P+ + +SW ++I+      M D+ L+    ML   ++PN  +
Sbjct: 280 MYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVS 339

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +S+++ AC  L  L   +QLH  II+  F+ +VF+ SAL+D+YAK G +R A  +F++M 
Sbjct: 340 FSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKME 399

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             D+V W ++I G+A +    +A++L+KRM+  G   +     +VL AC+   L++   +
Sbjct: 400 LYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWK 459

Query: 295 VHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
            + + +  D+ +I       A+ D+  + G LE+A    S M I+     WST+++ 
Sbjct: 460 -YFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAA 515



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 142/293 (48%), Gaps = 39/293 (13%)

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV-WNSIIGGFAQ 250
           +QLH  I++    S   + S ++ IY+ L  L ++  +FN +P+    + W SII  +  
Sbjct: 25  KQLHAQILRTSLPSPSLL-STILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTS 83

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLIL 308
           +     +L+ + +M  +G   D +   SVL++CT +  L  G  VH  +++     DL  
Sbjct: 84  HGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYT 143

Query: 309 NNALLDMYCKCGSLEDAMS-----------------------------VFSRMIQKDVIS 339
            NAL++MY K  SLE+  +                             VF  M ++D++S
Sbjct: 144 CNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVS 203

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL--FACSHAGFVEDGWNHFKS 397
           W+T+ISG AQNG  ++AL +   M  + ++P+  T+  VL  FA  +   ++    H  +
Sbjct: 204 WNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFA-EYVNLLKGKEIHGYA 262

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           ++  Y  D      S +ID+  +  ++ ++ ++ + +P + D ++W +++  C
Sbjct: 263 IRNGYDADVFIG--SSLIDMYAKCTRVDDSCRVFYMLP-QHDGISWNSIIAGC 312


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/592 (40%), Positives = 365/592 (61%), Gaps = 45/592 (7%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLV--NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMI 147
           + EA+++   +      P+  +V  N ++  +++  +++EA+ LFD+MP RN +SW  MI
Sbjct: 337 ITEARILFEQI------PDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMI 390

Query: 148 SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFE 204
           + Y     +++AL+LL  + R G+ P++ + ++   AC  +  L   RQ+H   +K G +
Sbjct: 391 AGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQ 450

Query: 205 SDVFVRSALIDIYAKLGE-------------------------------LRNAECVFNEM 233
            + +V +ALI +Y K                                  L +A  +F+ M
Sbjct: 451 FNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNM 510

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
            +RD+V W +II  +AQ    DEA+  +K M       +   LT +L  C GL   +LG 
Sbjct: 511 LSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQ 570

Query: 294 QVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+H   +K+  D +LI+ NAL+ MY KCG   D+  VF  M ++D+ +W+T I+G AQ+G
Sbjct: 571 QIHTVAIKHGMDSELIVANALMSMYFKCGC-ADSHKVFDSMEERDIFTWNTFITGCAQHG 629

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
             +EA+K++E M+   + PN +T VG+L ACSHAG V++GW  FKSM + YG+ P  EHY
Sbjct: 630 LGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHY 689

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +CM+DLLGR G +Q A K I++MP EPD V W ALLGACK+H+N ++   AA+K+   +P
Sbjct: 690 ACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEP 749

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
            + G Y++LSNIY++   W EVAE+RK M+ RG++KEPGCSW+++  ++H+F   D  H 
Sbjct: 750 SNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHE 809

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
           +I++I+  L+ L   L G GY PDT +VL D++ EQKE S+ YHSEKLA+ +GL+   +G
Sbjct: 810 KIEEIDYTLQDLYTLLRGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKG 869

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             I+I KNLRICGDCHTF K  + +  + I IRD  R+HHF++G+CSCGD+W
Sbjct: 870 MPIQIMKNLRICGDCHTFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 117/470 (24%), Positives = 223/470 (47%), Gaps = 30/470 (6%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           R ++ LL  + R     D  R    M          ++V +  ++ C +    +  A+ +
Sbjct: 96  RTATILLSGYARLGRVLDARRVFDGM-------PERNTVAWNAMVSCYVQNGDITMARRL 148

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
            + + S     +    N ++  +     + +A  LF QMP+RN+V+WT MIS Y   + +
Sbjct: 149 FDAMPS----RDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQH 204

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSAL 213
            K  ++   M  EG  P+   +++VL A   L    +L  L   ++K GFESDV + +++
Sbjct: 205 GKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSI 264

Query: 214 IDIYAK-LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           +++Y +    L  A   F+ M  R+   W+++I   +    +D A+ +Y R       + 
Sbjct: 265 LNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQ 324

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN-NALLDMYCKCGSLEDAMSVFSR 331
            + LT       GLA     T+  +   +    ++++ NA++  Y + G +++A  +F R
Sbjct: 325 TALLT-------GLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDR 377

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           M  ++ ISW+ MI+G AQNG S+EAL L +++  + + P+  ++     ACSH G +E G
Sbjct: 378 MPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETG 437

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
                S+    G        + +I + G+   ++   ++ + M  + D V+W + + A  
Sbjct: 438 -RQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVK-DTVSWNSFIAAL- 494

Query: 452 VHRNTDLAICAAKKIL-NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTM 500
           V  N    +  A+ I  N+  +D  ++  + + YA +++ DE  E  KTM
Sbjct: 495 VQNNM---LEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTM 541



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 172/363 (47%), Gaps = 49/363 (13%)

Query: 121 KFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSA 180
           +   L EA+ +FD MP R++++W +MISAYC++ M + A  L   +    VR      S 
Sbjct: 45  RLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLSG 104

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
             R    ++  R++  G+     E +    +A++  Y + G++  A  +F+ MP+RD+  
Sbjct: 105 YAR-LGRVLDARRVFDGMP----ERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTS 159

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKR-------------------------------AGF 269
           WNS++ G+  +  + +A NL+K+M +                                G 
Sbjct: 160 WNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGA 219

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGS-LEDAM 326
           + DQS   SVL A TGL  L +   +   VLK  ++ D+++  ++L++Y +  S L+ A+
Sbjct: 220 SPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAI 279

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
             F  M++++  +WSTMI+ L+  G    A+ ++    V  I P+   ++  L  C   G
Sbjct: 280 KFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI-PSQTALLTGLARC---G 335

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            + +    F+ +      DP    ++ MI    + G + EA +L   MP+  + ++W  +
Sbjct: 336 RITEARILFEQIP-----DPIVVSWNAMITGYMQNGMVDEAKELFDRMPFR-NTISWAGM 389

Query: 447 LGA 449
           +  
Sbjct: 390 IAG 392



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 111/245 (45%), Gaps = 14/245 (5%)

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           D    SA I   A+LG LR A  VF+ MP RD++ WNS+I  +  +  +++A  L+  + 
Sbjct: 32  DKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAIS 91

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDA 325
                 +  T T +L     L  +    +V   +   + + +  NA++  Y + G +  A
Sbjct: 92  ----GGNVRTATILLSGYARLGRVLDARRVFDGMP--ERNTVAWNAMVSCYVQNGDITMA 145

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F  M  +DV SW++M++G   +    +A  LF+ M    +    + I G +    H 
Sbjct: 146 RRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHG 205

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL---LGRAGKLQEAVKLIHEMPYEPDAVT 442
                GW+ F+ M    G  P + +++ ++     L   G L+    L+ +  +E D V 
Sbjct: 206 ----KGWDIFRMMHH-EGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVI 260

Query: 443 WRALL 447
             ++L
Sbjct: 261 GTSIL 265


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/591 (39%), Positives = 366/591 (61%), Gaps = 5/591 (0%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+  +  M+  G R +  T +  +K C A    E  + +H+ ++      + F    L++
Sbjct: 268 ALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVD 327

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K  ++++A+  +D MP++++++W  +IS Y     +  A+ L   M  E +  N  T
Sbjct: 328 MYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTT 387

Query: 178 YSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            S VL++  SL    + +Q+H   IK G  SD +V ++L+D Y K   +  A  +F E  
Sbjct: 388 LSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERT 447

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             DLV + S+I  ++Q  D +EAL LY +M+ A    D    +S+L AC  L+  E G Q
Sbjct: 448 WEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQ 507

Query: 295 VHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +HVH +K+    D+  +N+L++MY KCGS+EDA   FS +  + ++SWS MI G AQ+G+
Sbjct: 508 LHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGH 567

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            +EAL+LF  M    + PN+IT+V VL AC+HAG V +G  +F+ M+  +GI P +EHY+
Sbjct: 568 GKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYA 627

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           CMIDLLGR+GKL EAV+L++ +P+E D   W ALLGA ++H+N +L   AAK + +L+P+
Sbjct: 628 CMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPE 687

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
             GT++LL+NIYA++  W+ VA+VRK M+   + KEPG SWIE+  +++ F V D SH +
Sbjct: 688 KSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSR 747

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
            D+I   L  L   L   GY+      + +++  +KE  + +HSEKLA+ FGL++   G 
Sbjct: 748 SDEIYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPGG 807

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            IR++KNLRIC DCHTF K   K+ ++ I++RD  R+HHF+DG+CSCGDYW
Sbjct: 808 PIRVKKNLRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 142/465 (30%), Positives = 239/465 (51%), Gaps = 23/465 (4%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           SSLL  + +  +   +  A+   + M   GV+ +  T+  ++K C  +  +   + VH  
Sbjct: 51  SSLLSGYVQNGF---VEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGM 107

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
            +  GFE + F+ N L+ M+ K  LL++++ LF  + ERNVVSW  + S Y  +++  +A
Sbjct: 108 AVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEA 167

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDI 216
           + L   M+R G+ PN F+ S +L AC  L    + R++H  ++K+G + D F  +AL+D+
Sbjct: 168 VGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDM 227

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           Y+K GE+  A  VF ++   D+V WN+II G   +   D AL L   MK +G   +  TL
Sbjct: 228 YSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTL 287

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
           +S L+AC  +   ELG Q+H  ++K D   DL     L+DMY KC  ++DA   +  M +
Sbjct: 288 SSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPK 347

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
           KD+I+W+ +ISG +Q G   +A+ LF  M    I  N  T+  VL + +           
Sbjct: 348 KDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVA-------SLQA 400

Query: 395 FKSMKKFYGIDPGREHYS------CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
            K  K+ + I      YS       ++D  G+   + EA K+  E  +E D V + +++ 
Sbjct: 401 IKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWE-DLVAYTSMIT 459

Query: 449 ACKVHRNTDLAICAAKKILNLDPQ-DPGTYILLSNIYANSQKWDE 492
           A   + + + A+    ++ + D + DP     L N  AN   +++
Sbjct: 460 AYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQ 504



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 197/361 (54%), Gaps = 11/361 (3%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H H++  GF  +  L N L+ ++ K      A+ L D+  E +VVSW++++S Y     
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSA 212
            ++AL +   M   GV+ N FT+ +VL+AC     L + R++H   +  GFESD FV + 
Sbjct: 63  VEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANT 122

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           L+ +YAK G L ++  +F  +  R++V WN++   + Q+    EA+ L+K M R+G   +
Sbjct: 123 LVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPN 182

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
           + +++ +L AC GL   +LG ++H  +LK   D D    NAL+DMY K G +E A++VF 
Sbjct: 183 EFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQ 242

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            +   DV+SW+ +I+G   +  +  AL L + MK S  +PN  T+   L AC+  GF E 
Sbjct: 243 DIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKEL 302

Query: 391 GWNHFKSMKKFYGIDPGREHYSC--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
           G     S+ K   +D   + ++   ++D+  +   + +A +    MP + D + W AL+ 
Sbjct: 303 GRQLHSSLIK---MDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMP-KKDIIAWNALIS 358

Query: 449 A 449
            
Sbjct: 359 G 359



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 150/271 (55%), Gaps = 6/271 (2%)

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           +LH  +IK GF  D  +R+ L+ +Y+K      A  + +E    D+V W+S++ G+ QN 
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNN 310
            V+EAL ++  M   G   ++ T  SVL+AC+    L +G +VH    V  ++ D  + N
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
            L+ MY KCG L+D+  +F  +++++V+SW+ + S   Q+    EA+ LF+ M  S I P
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 371 NYITIVGVLFACSHAGFVE-DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           N  +I  +L AC  AG  E D       +    G+D  +   + ++D+  +AG+++ AV 
Sbjct: 182 NEFSISIILNAC--AGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVA 239

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           +  ++ + PD V+W A++  C +H   DLA+
Sbjct: 240 VFQDIAH-PDVVSWNAIIAGCVLHDCNDLAL 269



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 21/213 (9%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           T +    D   A+K    MQ   ++ D    + L+  C    A E+ K +H H +  GF 
Sbjct: 459 TAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFM 518

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
            + F  N L+NM+ K   +E+A   F ++P R +VSW+ MI  Y       +AL L   M
Sbjct: 519 CDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQM 578

Query: 167 LREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVG---FES-DVFV--------RSALI 214
           LR+GV PN  T  +VL AC+        H G++  G   FE  +V           + +I
Sbjct: 579 LRDGVPPNHITLVSVLCACN--------HAGLVNEGKQYFEKMEVMFGIKPTQEHYACMI 630

Query: 215 DIYAKLGELRNAECVFNEMPTR-DLVVWNSIIG 246
           D+  + G+L  A  + N +P   D  VW +++G
Sbjct: 631 DLLGRSGKLNEAVELVNSIPFEADGFVWGALLG 663


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 233/595 (39%), Positives = 365/595 (61%), Gaps = 5/595 (0%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           DL ++ +    MQ  G+  +  TY  +++ C     +E  + +H+  +  GFE + ++  
Sbjct: 326 DLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSG 385

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
           +L++M+ K+  L++A+ + + + +R+VVSWT+MI+ Y      ++AL     M   GV P
Sbjct: 386 VLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWP 445

Query: 174 NMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +    ++   AC  +  +RQ   +H  +   G+ +D+ + + L+++YA+ G    A  +F
Sbjct: 446 DNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLF 505

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
            E+  +D + WN +I GF Q+   ++AL ++ +M +AG   +  T  S + A   LA ++
Sbjct: 506 REIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIK 565

Query: 291 LGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G QVH   +K  H  +  + NAL+ +Y KCGS+EDA  +FS M  ++ +SW+T+I+  +
Sbjct: 566 QGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCS 625

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           Q+G   EAL LF+ MK   +KPN +T +GVL ACSH G VE+G ++FKSM   YG++P  
Sbjct: 626 QHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIP 685

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           +HY+C++D+LGRAG+L  A + + EMP   +A+ WR LL ACKVH+N ++   AAK +L 
Sbjct: 686 DHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLE 745

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           L+P D  +Y+LLSN YA + KW    +VRK M+ RGI KEPG SWIEV   +HAF V D 
Sbjct: 746 LEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDR 805

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
            HP  D+I K L  L  +L  +GY  +   +  + E EQK+ +   HSEKLA+ FGLM+L
Sbjct: 806 LHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTL 865

Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
                +R+ KNLR+C DCH++ K T+++  + IV+RD  R+HHF  G+CSCGDYW
Sbjct: 866 PPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/402 (31%), Positives = 208/402 (51%), Gaps = 9/402 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    MQ  G+R D VT A L+  C +   +++ K +H+++L  G   +      LL+
Sbjct: 229 ALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLD 288

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++VK   +E A  +F+     NVV W  M+ AY       K+ E+   M   G+ PN FT
Sbjct: 289 LYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFT 348

Query: 178 YSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           Y  +LR C     + +  Q+H   IK GFESD++V   LID+Y+K   L  A  +   + 
Sbjct: 349 YPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLE 408

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD+V W S+I G+ Q+   +EAL  +K M+  G   D   L S   AC G+  +  G Q
Sbjct: 409 KRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQ 468

Query: 295 VH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  V+V  Y  D+ + N L+++Y +CG  E+A S+F  +  KD I+W+ +ISG  Q+  
Sbjct: 469 IHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRL 528

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHY 411
            ++AL +F  M  +  K N  T +  + A ++   ++ G   H +++K   G     E  
Sbjct: 529 YEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKT--GHTSETEVA 586

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           + +I L G+ G +++A  +  EM    + V+W  ++ +C  H
Sbjct: 587 NALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNTIITSCSQH 627



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 205/403 (50%), Gaps = 10/403 (2%)

Query: 52  QRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           QR L + A +    M    V       + ++  C       + +++H  V    F  ETF
Sbjct: 121 QRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETF 180

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           + N L+ +++ F   + A+ +F  M   + V++ T+IS +      + AL++   M   G
Sbjct: 181 VGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSG 240

Query: 171 VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
           +RP+  T +++L AC S+  L   +QLH  ++K G   D     +L+D+Y K G++  A 
Sbjct: 241 LRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAH 300

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            +FN     ++V+WN ++  + Q SD+ ++  ++ +M+  G   ++ T   +LR CT   
Sbjct: 301 DIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTG 360

Query: 288 LLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
            +ELG Q+H   +K  ++ D+ ++  L+DMY K   L+ A  +   + ++DV+SW++MI+
Sbjct: 361 QIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIA 420

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGI 404
           G  Q+ + +EAL  F+ M+   + P+ I +     AC+    +  G   H +     Y  
Sbjct: 421 GYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAA 480

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           D     ++ +++L  R G+ +EA  L  E+ ++ D +TW  L+
Sbjct: 481 DISI--WNTLVNLYARCGRSEEAFSLFREIDHK-DEITWNGLI 520



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 191/387 (49%), Gaps = 12/387 (3%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H   +  G   +  + N+L++++ K  L+ +A+ +F ++  R+ VSW  M+S Y    +
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGL 124

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSA 212
             +A  L   M    V P  +  S+VL AC    +    R +H  + K  F S+ FV +A
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNA 184

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           LI +Y   G  + AE VF +M   D V +N++I G AQ    + AL ++  M+ +G   D
Sbjct: 185 LIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPD 244

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
             T+ S+L AC  +  L+ G Q+H ++LK     D I   +LLD+Y KCG +E A  +F+
Sbjct: 245 CVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFN 304

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
              + +V+ W+ M+    Q     ++ ++F  M+ + I PN  T   +L  C+  G +E 
Sbjct: 305 LGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIEL 364

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G     S+    G +        +ID+  +   L +A K++ EM  + D V+W +++   
Sbjct: 365 G-EQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKIL-EMLEKRDVVSWTSMIAGY 422

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTY 477
             H   + A+   K++     QD G +
Sbjct: 423 VQHDFCEEALATFKEM-----QDCGVW 444



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 137/263 (52%), Gaps = 6/263 (2%)

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           ++ ++H   +  G  +D  + + LID+YAK G +  A  VF E+ +RD V W +++ G+A
Sbjct: 61  LVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYA 120

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           Q     EA  LY +M           L+SVL ACT   L   G  +H  V K  +  +  
Sbjct: 121 QRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETF 180

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + NAL+ +Y   GS + A  VF  M+  D ++++T+ISG AQ G+ + AL++F+ M++S 
Sbjct: 181 VGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSG 240

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
           ++P+ +T+  +L AC+  G ++ G   H   +K     D   E    ++DL  + G ++ 
Sbjct: 241 LRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE--GSLLDLYVKCGDIET 298

Query: 427 AVKLIHEMPYEPDAVTWRALLGA 449
           A   I  +    + V W  +L A
Sbjct: 299 AHD-IFNLGDRTNVVLWNLMLVA 320



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 101/210 (48%), Gaps = 21/210 (10%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           F   R   +A+     M   G + +  T+   I        +++ K VH   +  G   E
Sbjct: 523 FGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSE 582

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
           T + N L++++ K   +E+A+++F +M  RN VSW T+I++        +AL+L   M +
Sbjct: 583 TEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQ 642

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFE-----SDVFV-------RSALIDI 216
           EG++PN  T+  VL AC         H G+++ G       S+V+         + ++DI
Sbjct: 643 EGLKPNDVTFIGVLAACS--------HVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDI 694

Query: 217 YAKLGELRNAECVFNEMP-TRDLVVWNSII 245
             + G+L  A    +EMP T + ++W +++
Sbjct: 695 LGRAGQLDRARRFVDEMPITANAMIWRTLL 724


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/595 (38%), Positives = 357/595 (60%), Gaps = 5/595 (0%)

Query: 54   DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
            DL  + +    MQ   +  +  TY  ++K C+    +E  + +H+ ++   F+   ++ +
Sbjct: 453  DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCS 512

Query: 114  ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            +L++M+ K   L+ A  +  +   ++VVSWTTMI+ Y     +DKAL     ML  G+R 
Sbjct: 513  VLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 572

Query: 174  NMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
            +    +  + AC  L  L+   Q+H      GF SD+  ++AL+ +Y+K G +  A   F
Sbjct: 573  DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAF 632

Query: 231  NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
             +    D + WN+++ GF Q+ + +EAL ++ RM R G  ++  T  S ++A +  A ++
Sbjct: 633  EQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMK 692

Query: 291  LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
             G QVH  + K  YD +  + NA++ MY KCGS+ DA   F  +  K+ +SW+ MI+  +
Sbjct: 693  QGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYS 752

Query: 349  QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
            ++G+  EAL  F+ M  S ++PN++T+VGVL ACSH G V+ G  +F+SM   YG+ P  
Sbjct: 753  KHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKP 812

Query: 409  EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
            EHY C++D+L RAG L  A   I EMP EPDA+ WR LL AC VH+N ++   AA  +L 
Sbjct: 813  EHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLE 872

Query: 469  LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
            L+P+D  TY+LLSN+YA  +KWD     R+ M+ +G+ KEPG SWIEV   IH+F V D 
Sbjct: 873  LEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQ 932

Query: 529  SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
            +HP  D+I+++ K L ++   +GY  D   +L +L+ EQK+ +I  HSEKLAI FGL+SL
Sbjct: 933  NHPLADEIHEYFKDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFGLLSL 992

Query: 589  TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
                 I + KNLR+C DCH + K  +K+ N+ I++RD  R+HHF+ G CSC DYW
Sbjct: 993  PATMPINVMKNLRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/404 (31%), Positives = 204/404 (50%), Gaps = 11/404 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +AM+    MQ  G+  DS T A L+  C +   +   + +H +    GF     +   LL
Sbjct: 355 KAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALL 414

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF--MLREGVRPN 174
           N++ K S +E A   F +    NVV W  M+ AY    ++D      IF  M  E + PN
Sbjct: 415 NLYAKCSDIETALNYFLETEVENVVLWNVMLVAY--GLLDDLRNSFRIFRQMQIEEIVPN 472

Query: 175 MFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
            +TY ++L+ C     L +  Q+H  IIK  F+ + +V S LID+YAKLG+L  A  +  
Sbjct: 473 QYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILI 532

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
               +D+V W ++I G+ Q +  D+AL  +++M   G  +D+  LT+ + AC GL  L+ 
Sbjct: 533 RFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE 592

Query: 292 GTQVHVH--VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G Q+H    V  +  DL   NAL+ +Y KCG++E+A   F +    D I+W+ ++SG  Q
Sbjct: 593 GQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQ 652

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           +G ++EAL++F  M    I  N  T    + A S    ++ G      + K  G D   E
Sbjct: 653 SGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITK-TGYDSETE 711

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             + +I +  + G + +A K   E+  + + V+W A++ A   H
Sbjct: 712 VCNAIISMYAKCGSISDAKKQFLELSMK-NEVSWNAMINAYSKH 754



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 201/388 (51%), Gaps = 9/388 (2%)

Query: 69  GVRADSVTYAELIKCCLARH-AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           G+R +  T   L++ CL  + +++E + +H+ +L  GF+    L   LL+ ++    L+ 
Sbjct: 62  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDG 121

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD- 186
           A  +FD+MPER + +W  MI       ++ K   L   M+ E V PN  T+S VL AC  
Sbjct: 122 ALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRG 181

Query: 187 ---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
              +  ++ Q+H  II  G      V + LID+Y++ G +  A  VF+ +  +D   W +
Sbjct: 182 GSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVA 241

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-- 301
           +I G ++N    EA+ L+  M   G        +SVL AC  +  LE+G Q+H  VLK  
Sbjct: 242 MISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 301

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
           +  D  + NAL+ +Y   GSL  A  +FS M Q+D ++++T+I+GL+Q GY ++A++LF+
Sbjct: 302 FSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 361

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            M++  ++P+  T+  ++ ACS  G +  G        K  G     +    +++L  + 
Sbjct: 362 RMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKL-GFASNDKIEGALLNLYAKC 420

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGA 449
             ++ A+    E   E + V W  +L A
Sbjct: 421 SDIETALNYFLETEVE-NVVLWNVMLVA 447



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 220/459 (47%), Gaps = 12/459 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A++    M   G+      ++ ++  C    ++E  + +H  VL  GF  +T++ N L+
Sbjct: 254 EAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALV 313

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +++     L  A+ +F  M +R+ V++ T+I+        +KA+EL   M  +G+ P+  
Sbjct: 314 SLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSN 373

Query: 177 TYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T ++++ AC S   L   +QLH    K+GF S+  +  AL+++YAK  ++  A   F E 
Sbjct: 374 TLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLET 433

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
              ++V+WN ++  +    D+  +  ++++M+      +Q T  S+L+ C  L  LELG 
Sbjct: 434 EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE 493

Query: 294 QVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+H  ++K    L   + + L+DMY K G L+ A  +  R   KDV+SW+TMI+G  Q  
Sbjct: 494 QIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYN 553

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           +  +AL  F  M    I+ + + +   + AC+    +++G     +     G        
Sbjct: 554 FDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEG-QQIHAQACVSGFSSDLPFQ 612

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           + ++ L  + G ++EA  L  E     D + W AL+   +   N + A+    + +N + 
Sbjct: 613 NALVTLYSKCGNIEEAY-LAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFAR-MNREG 670

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
            D   +   S + A S    E A +++  +   +  + G
Sbjct: 671 IDSNNFTFGSAVKAAS----ETANMKQGKQVHAVITKTG 705



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 210/408 (51%), Gaps = 14/408 (3%)

Query: 70  VRADSVTYAELIKCCLARH-AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           V  +  T++ +++ C     A +  + +H  ++  G    T + N L++++ +   ++ A
Sbjct: 165 VTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRA 224

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC--- 185
           + +FD +  ++  SW  MIS     +   +A+ L   M   G+ P  + +S+VL AC   
Sbjct: 225 RRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKI 284

Query: 186 DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
           +SL I  QLH  ++K+GF SD +V +AL+ +Y  LG L +AE +F+ M  RD V +N++I
Sbjct: 285 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLI 344

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YD 303
            G +Q    ++A+ L+KRM+  G   D +TL S++ AC+    L  G Q+H +  K  + 
Sbjct: 345 NGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFA 404

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            +  +  ALL++Y KC  +E A++ F     ++V+ W+ M+         + + ++F  M
Sbjct: 405 SNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQM 464

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSC--MIDLLGR 420
           ++  I PN  T   +L  C   G +E G   H + +K  + ++     Y C  +ID+  +
Sbjct: 465 QIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNA----YVCSVLIDMYAK 520

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
            GKL  A  ++     + D V+W  ++     +   D A+   +++L+
Sbjct: 521 LGKLDTAWDILIRFAGK-DVVSWTTMIAGYTQYNFDDKALTTFRQMLD 567



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 154/328 (46%), Gaps = 16/328 (4%)

Query: 170 GVRPNMFTYSAVLRAC----DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           G+RPN  T   +L  C     SL   R+LH  I+K+GF+++  +   L+D Y   G+L  
Sbjct: 62  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDG 121

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VF+EMP R +  WN +I   A  S   +   L+ RM       ++ T + VL AC G
Sbjct: 122 ALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRG 181

Query: 286 LAL-LELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            ++  ++  Q+H  ++        I+ N L+D+Y + G ++ A  VF  +  KD  SW  
Sbjct: 182 GSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVA 241

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKF 401
           MISGL++N    EA++LF  M V  I P       VL AC     +E G   H   +K  
Sbjct: 242 MISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 301

Query: 402 YGIDPGREHYSC--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
           +  D     Y C  ++ L    G L  A  +   M  + DAVT+  L+         + A
Sbjct: 302 FSSDT----YVCNALVSLYFHLGSLISAEHIFSNMS-QRDAVTYNTLINGLSQCGYGEKA 356

Query: 460 ICAAKKILNLDPQDPGTYILLSNIYANS 487
           +   K+ + LD  +P +  L S + A S
Sbjct: 357 MELFKR-MQLDGLEPDSNTLASLVVACS 383


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 244/591 (41%), Positives = 362/591 (61%), Gaps = 6/591 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A  A  ++   G  A    Y   I  C+ R A+ E + VH H++   + P  +L   L+ 
Sbjct: 25  ARHAASSLAVPGADARFHDYDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLII 84

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++V+   L++A+ + D MPERNVVSWT MIS Y  +  + +ALEL I MLR G + N FT
Sbjct: 85  LYVRCGALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFT 144

Query: 178 YSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            + VL +C    S+  + Q+H  ++K  FES +FV S+L+D+Y K G ++ A  VF+ +P
Sbjct: 145 LATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLP 204

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD V   +II G+AQ    DEAL+L++++  +G   +  T T++L + +GLA L  G Q
Sbjct: 205 ERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQ 264

Query: 295 VHVHVLKYDHD--LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           VH  +L+ +    ++L N+L+DMY KCG L  +  VF  M Q+  ISW+ M+ G  ++G 
Sbjct: 265 VHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGI 324

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            QE ++LF +M    +KP+ +T++ VL  CSH G V++G + F  + K         HY 
Sbjct: 325 GQEVVQLFRTM-TEEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYG 383

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           C+IDLLGR+G+LQ+A+ LI  MP+EP    W +LLGAC+VH N  +    A+K+L+++P 
Sbjct: 384 CVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPG 443

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           + G Y++LSNIYA +  W +V  VRK M    +TKEP  SWI ++K IH F+ ++  HP+
Sbjct: 444 NAGNYVILSNIYAAAGMWKDVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPR 503

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
              IN  +K +   +   G+ PD + VL D++ EQKE  +  HSEKLAI FGLM+   G 
Sbjct: 504 KKDINAKIKEVYVDVKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGL 563

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           TI++ KNLRIC DCH FAK  +K+  + I +RD  R+H  +DG C+CGDYW
Sbjct: 564 TIQVMKNLRICVDCHNFAKFVSKVYGREISLRDKNRFHLLKDGACTCGDYW 614


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/590 (40%), Positives = 364/590 (61%), Gaps = 5/590 (0%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A +  + MQ  G +    T+A +IK C +   +   +++H   L  G      ++  L+ 
Sbjct: 288 AFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMV 347

Query: 118 MHVKFSLLEEAQVLFDQMPE-RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
              K   +++A  LF  M   ++VVSWT MIS Y      D+A+ L   M REGV+PN F
Sbjct: 348 ALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHF 407

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           TYS +L    ++ I  ++H  +IK  +E    V +AL+D + K+G + +A  VF  + T+
Sbjct: 408 TYSTILTVQHAVFI-SEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETK 466

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG-LALLELGTQV 295
           D++ W++++ G+AQ  + +EA  ++ ++ R G   ++ T  S++ ACT   A +E G Q 
Sbjct: 467 DVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQF 526

Query: 296 HVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H + +K   ++ L ++++L+ +Y K G++E A  +F R  ++D++SW++MISG AQ+G +
Sbjct: 527 HAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQA 586

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
           ++AL++FE M+   ++ + IT +GV+ AC+HAG V  G N+F  M   + I+P  EHYSC
Sbjct: 587 KKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSC 646

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           MIDL  RAG L +A+ +I+ MP+ P A  WR +L A +VHRN +L   AA+KI++L+PQ 
Sbjct: 647 MIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQH 706

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQI 533
              Y+LLSNIYA +  W E   VRK M  R + KEPG SWIEV  + ++F   D SHP  
Sbjct: 707 SAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLS 766

Query: 534 DKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT 593
           D I   L  L  +L  VGY PDTNYV  D+E EQKE  + +HSE+LAI FGL++      
Sbjct: 767 DHIYSKLSELNTRLRDVGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEIP 826

Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           ++I KNLR+CGDCH+F KL + +E + IV+RD  R+HHF+ G CSCGDYW
Sbjct: 827 LQIVKNLRVCGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 141/480 (29%), Positives = 235/480 (48%), Gaps = 38/480 (7%)

Query: 1   MILKAVSKLKWTKPSSQARQFSLTI-TPPVASCNTITRNSSSLL-DDFTRFCYQ------ 52
           M L+A++    T P  + R++ L     P+   + +  N+ +LL D   RF  Q      
Sbjct: 5   MTLRALTNTS-TNPILRIRRYQLHCHANPLLQSHVVALNARTLLRDSDPRFAQQLFDQTP 63

Query: 53  -RDLPR-------------AMKAMH---AMQCHGVRADSVTYAELIKCCLARHAVEEAKL 95
            RDL +               +A+H   ++   G+  DS T + ++  C         + 
Sbjct: 64  LRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQ 123

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           VH   +  G      + N L++M+ K   + + + +FD+M +R+VVSW ++++ Y   + 
Sbjct: 124 VHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRF 183

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSA 212
           ND+  EL   M  EG RP+ +T S V+ A     ++ I  Q+H  ++K+GFE++  V ++
Sbjct: 184 NDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNS 243

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           LI + +K G LR+A  VF+ M  +D V WNS+I G   N    EA   +  M+ AG    
Sbjct: 244 LISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPT 303

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFS 330
            +T  SV+++C  L  L L   +H   LK       N   AL+    KC  ++DA S+FS
Sbjct: 304 HATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFS 363

Query: 331 RMIQ-KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
            M   + V+SW+ MISG  QNG + +A+ LF  M+   +KPN+ T   +L    HA F+ 
Sbjct: 364 LMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTIL-TVQHAVFIS 422

Query: 390 DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           +   H + +K  Y  +      + ++D   + G + +AVK + E+    D + W A+L  
Sbjct: 423 E--IHAEVIKTNY--EKSSSVGTALLDAFVKIGNISDAVK-VFELIETKDVIAWSAMLAG 477



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/396 (30%), Positives = 206/396 (52%), Gaps = 13/396 (3%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  G R D  T + +I     + AV     +H  V+  GFE E  + N L++M  K  +
Sbjct: 194 MQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGM 253

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L +A+V+FD M  ++ VSW +MI+ +     + +A E    M   G +P   T+++V+++
Sbjct: 254 LRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKS 313

Query: 185 CDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM-PTRDLVV 240
           C SL    ++R LHC  +K G  ++  V +AL+    K  E+ +A  +F+ M   + +V 
Sbjct: 314 CASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVS 373

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           W ++I G+ QN D D+A+NL+  M+R G   +  T +++L     + +    +++H  V+
Sbjct: 374 WTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFI----SEIHAEVI 429

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K  Y+    +  ALLD + K G++ DA+ VF  +  KDVI+WS M++G AQ G ++EA K
Sbjct: 430 KTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAK 489

Query: 359 LFESMKVSRIKPNYITIVGVLFACSH-AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
           +F  +    IKPN  T   ++ AC+     VE G   F +      ++      S ++ L
Sbjct: 490 IFHQLTREGIKPNEFTFCSIINACTAPTASVEQG-KQFHAYAIKLRLNNALCVSSSLVTL 548

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             + G ++ A ++      E D V+W +++     H
Sbjct: 549 YAKRGNIESAHEIFKRQK-ERDLVSWNSMISGYAQH 583



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 177/341 (51%), Gaps = 12/341 (3%)

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           AQ LFDQ P R++     ++  Y       +AL L + + R G+ P+ +T S VL  C  
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 188 LI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
                +  Q+HC  +K G    + V ++L+D+Y K G +R+   VF+EM  RD+V WNS+
Sbjct: 115 SFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSL 174

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           + G++ N   D+   L+  M+  G+  D  T+++V+ A      + +G Q+H  V+K  +
Sbjct: 175 LTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGF 234

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           + + ++ N+L+ M  K G L DA  VF  M  KD +SW++MI+G   NG   EA + F +
Sbjct: 235 ETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNN 294

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWN---HFKSMKKFYGIDPGREHYSCMIDLLG 419
           M+++  KP + T   V+ +C  A   E G     H K++K   G+   +   + ++  L 
Sbjct: 295 MQLAGAKPTHATFASVIKSC--ASLKELGLVRVLHCKTLKS--GLSTNQNVLTALMVALT 350

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           +  ++ +A  L   M      V+W A++     + +TD A+
Sbjct: 351 KCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAV 391


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 244/608 (40%), Positives = 374/608 (61%), Gaps = 21/608 (3%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D   +++A   M+   ++ +  T+   IK C A   +   K  H   L  GFE + F+ +
Sbjct: 62  DSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSS 121

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI----FMLRE 169
            L++M+ K   L  A+VLFD++P RN+V+WT++I+ Y     ND A E L+    F+  +
Sbjct: 122 ALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQ---NDDAHEALMVFKEFLFEK 178

Query: 170 --------GVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYA 218
                   G   +     +VL AC  +    +   +H   IKVG +  + V + L+D YA
Sbjct: 179 SEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYA 238

Query: 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA-DQSTLT 277
           K GE+  +  VF++M  +D+V WNS+I  +AQN    +A  ++  M +AG    ++ TL+
Sbjct: 239 KCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLS 298

Query: 278 SVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK 335
           ++L AC     L +G  +H  V+K  Y +++I+  +++DMYCKCG  E A + F  M +K
Sbjct: 299 TLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEK 358

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
           +V SW+ MI+G   +G+++EAL +F  M  + +KPNYIT + VL ACSHAGF+E+GW  F
Sbjct: 359 NVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWF 418

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN 455
            +M   Y ++PG EHY CM+DLLGRAG ++EA  LI  M    D V W +LL AC++H++
Sbjct: 419 NAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKD 478

Query: 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE 515
            +LA  +A+++  LDP + G Y+LL+NIYA++ +W +V  +R  ++ RG+ K PG S +E
Sbjct: 479 VELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVE 538

Query: 516 VNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYH 575
           +  ++H F V D  HPQ +KI K+L+ L  KL   GY P+   VL D++ E+KE  ++ H
Sbjct: 539 LKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVH 598

Query: 576 SEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDG 635
           SEKLA+ FG+M+   G TI + KNLR+CGDCHT  KL +K+ ++ I++RD  R+HHF+DG
Sbjct: 599 SEKLAVAFGVMNSIPGSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDG 658

Query: 636 NCSCGDYW 643
            CSCGDYW
Sbjct: 659 LCSCGDYW 666



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/374 (30%), Positives = 188/374 (50%), Gaps = 59/374 (15%)

Query: 131 LFDQMPER-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
           LF++  +R +V SW ++I+       + ++L    +M +  ++PN  T+   +++C +L 
Sbjct: 37  LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 190 IL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            L   +Q H   +  GFESD+FV SALID+Y+K G+L NA  +F+E+P R++V W S+I 
Sbjct: 97  DLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLIT 156

Query: 247 GFAQNSDVDEALNLYKRM---------KRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           G+ QN D  EAL ++K           +  G + D   + SVL AC+ ++   +   VH 
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHG 216

Query: 298 HVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
             +K   D ++   N LLD Y KCG +  +  VF  M +KDV+SW++MI+  AQNG S +
Sbjct: 217 VAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTD 276

Query: 356 ALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGW---------------------- 392
           A ++F  M K    K N +T+  +L AC+H G +  G                       
Sbjct: 277 AFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSII 336

Query: 393 -------------NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY--- 436
                        N F  MK     +     ++ MI   G  G  +EA+ + ++M +   
Sbjct: 337 DMYCKCGQAEMARNAFDGMK-----EKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGV 391

Query: 437 EPDAVTWRALLGAC 450
           +P+ +T+ ++L AC
Sbjct: 392 KPNYITFISVLAAC 405



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 124/238 (52%), Gaps = 18/238 (7%)

Query: 225 NAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           N   +FN+   R D+  WNS+I   A+  D  E+L  +  M++     ++ST    +++C
Sbjct: 33  NLTTLFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSC 92

Query: 284 TGLALLELGTQVHVH--VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
           + L  L  G Q H    V  ++ DL +++AL+DMY KCG L +A  +F  + ++++++W+
Sbjct: 93  SALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWT 152

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPN---------YITIVGVLFACSHAG--FVED 390
           ++I+G  QN  + EAL +F+     + + N          + ++ VL ACS      V +
Sbjct: 153 SLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSE 212

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
           G  H  ++K   G+D      + ++D   + G++  + K+  +M  E D V+W +++ 
Sbjct: 213 G-VHGVAIK--VGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMA-EKDVVSWNSMIA 266


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/572 (40%), Positives = 356/572 (62%), Gaps = 6/572 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y  +I  C     +  A+ +H H+       + FL+N L++M+ K   + +A+ +FD+MP
Sbjct: 63  YHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMP 122

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA---CDSLIILRQ 193
            R+VVSWT +I+ Y    M  +A+ LL  MLR   RPN FT++++L+A   C    I  Q
Sbjct: 123 SRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQ 182

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H   +K  ++ DV+V SAL+D+YA+  ++  A  VF+ + +++ V WN++I GFA+ +D
Sbjct: 183 MHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKAD 242

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNA 311
            +  L  +  M+R GF A   T +S+  A   +  LE G  VH H++K    L   + N 
Sbjct: 243 GETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNT 302

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           +L MY K GS+ DA  VF RM ++D+++W+TM++ LAQ G  +EA+  FE ++   I+ N
Sbjct: 303 MLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLN 362

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            IT + VL ACSH G V++G ++F  MK  Y + P  +HY   +DLLGRAG L+EA+  +
Sbjct: 363 QITFLSVLTACSHGGLVKEGKHYFDMMKD-YNVQPEIDHYVSFVDLLGRAGLLKEALIFV 421

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
            +MP EP A  W ALLGAC++H+N  +   AA  +  LDP D G  +LL NIYA++ KW+
Sbjct: 422 FKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWN 481

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
           + A VRK M+A G+ KEP CSW+++   +H F   D +HP+   I +  + +  ++   G
Sbjct: 482 DAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAG 541

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           Y P+T +VL  +  +++E  ++YHSEK+A+ F L+++  G +IRI KN+RICGDCH+  K
Sbjct: 542 YVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGDCHSAFK 601

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             +K+  + IV+RD  R+HHF +G+CSCGDYW
Sbjct: 602 YVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 138/282 (48%), Gaps = 6/282 (2%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R +  T+  L+K   A       + +H   +   ++ + ++ + LL+M+ +   ++ A +
Sbjct: 158 RPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIM 217

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           +FD++  +N VSW  +I+ +      +  L     M R G     FTYS++  A   +  
Sbjct: 218 VFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGA 277

Query: 191 LRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L Q   +H  +IK G +   FV + ++ +YAK G + +A  VF+ M  RDLV WN+++  
Sbjct: 278 LEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTA 337

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI 307
            AQ     EA+  ++ +++ G   +Q T  SVL AC+   L++ G      +  Y+    
Sbjct: 338 LAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPE 397

Query: 308 LNN--ALLDMYCKCGSLEDAM-SVFSRMIQKDVISWSTMISG 346
           +++  + +D+  + G L++A+  VF   ++     W  ++  
Sbjct: 398 IDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGA 439



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 34/253 (13%)

Query: 35  ITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAK 94
           +++N  S       F  + D    +     MQ +G  A   TY+ +        A+E+ +
Sbjct: 223 VSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGR 282

Query: 95  LVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK 154
            VH H++  G +   F+ N +L M+ K   + +A+ +FD+M +R++V+W TM++A     
Sbjct: 283 WVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYG 342

Query: 155 MNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGF----------- 203
           +  +A+     + + G++ N  T+ +VL AC         H G++K G            
Sbjct: 343 LGKEAVAHFEEIRKCGIQLNQITFLSVLTACS--------HGGLVKEGKHYFDMMKDYNV 394

Query: 204 --ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL-VVWNSIIGGFAQNSDVDEALNL 260
             E D +V  + +D+  + G L+ A     +MP      VW +++G          A  +
Sbjct: 395 QPEIDHYV--SFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLG----------ACRM 442

Query: 261 YKRMKRAGFAADQ 273
           +K  K   +AAD 
Sbjct: 443 HKNAKMGQYAADH 455


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 233/595 (39%), Positives = 364/595 (61%), Gaps = 5/595 (0%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           DL ++ +    MQ  G+  +  TY  +++ C     +E  + +H+  +  GFE + ++  
Sbjct: 326 DLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSG 385

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
           +L++M+ K+  L++A+ + + + +R+VVSWT+MI+ Y      ++AL     M   GV P
Sbjct: 386 VLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWP 445

Query: 174 NMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +    ++   AC  +  +RQ   +H  +   G+ +D+ + + L+++YA+ G    A  +F
Sbjct: 446 DNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLF 505

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
            E+  +D + WN +I GF Q+    +AL ++ +M +AG   +  T  S + A   LA ++
Sbjct: 506 REIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIK 565

Query: 291 LGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G QVH   +K  H  +  + NAL+ +Y KCGS+EDA  +FS M  ++ +SW+T+I+  +
Sbjct: 566 QGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCS 625

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           Q+G   EAL LF+ MK   +KPN +T +GVL ACSH G VE+G ++FKSM   YG++P  
Sbjct: 626 QHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIP 685

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           +HY+C++D+LGRAG+L  A + + EMP   +A+ WR LL ACKVH+N ++   AAK +L 
Sbjct: 686 DHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLE 745

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           L+P D  +Y+LLSN YA + KW    +VRK M+ RGI KEPG SWIEV   +HAF V D 
Sbjct: 746 LEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDR 805

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
            HP  D+I K L  L  +L  +GY  +   +  + E EQK+ +   HSEKLA+ FGLM+L
Sbjct: 806 LHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTL 865

Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
                +R+ KNLR+C DCH++ K T+++  + IV+RD  R+HHF  G+CSCGDYW
Sbjct: 866 PPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/402 (31%), Positives = 209/402 (51%), Gaps = 9/402 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    MQ  G+R D VT A L+  C +   +++ K +H+++L  G   +      LL+
Sbjct: 229 ALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLD 288

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++VK   +E A  +F+     NVV W  M+ AY       K+ E+   M   G+ PN FT
Sbjct: 289 LYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFT 348

Query: 178 YSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           Y  +LR C     + +  Q+H   IK GFESD++V   LID+Y+K G L  A  +   + 
Sbjct: 349 YPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLE 408

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD+V W S+I G+ Q+   +EAL  +K M+  G   D   L S   AC G+  +  G Q
Sbjct: 409 KRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQ 468

Query: 295 VH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  V+V  Y  D+ + N L+++Y +CG  E+A S+F  +  KD I+W+ +ISG  Q+  
Sbjct: 469 IHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRL 528

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHY 411
            ++AL +F  M  +  K N  T +  + A ++   ++ G   H +++K   G     E  
Sbjct: 529 YKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKT--GHTSETEVA 586

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           + +I L G+ G +++A  +  EM    + V+W  ++ +C  H
Sbjct: 587 NALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNTIITSCSQH 627



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 198/376 (52%), Gaps = 9/376 (2%)

Query: 78  AELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE 137
           + ++  C       + +++H  V    F  ETF+ N L+ +++ F   + A+ +F  M  
Sbjct: 148 SSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLF 207

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQL 194
            + V++ T+IS +      + AL++   M   G+RP+  T +++L AC S+  L   +QL
Sbjct: 208 CDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQL 267

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
           H  ++K G   D     +L+D+Y K G++  A  +FN     ++V+WN ++  + Q SD+
Sbjct: 268 HSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDL 327

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNAL 312
            ++  ++ +M+  G   +Q T   +LR CT    +ELG Q+H   +K  ++ D+ ++  L
Sbjct: 328 AKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVL 387

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           +DMY K G L+ A  +   + ++DV+SW++MI+G  Q+ + +EAL  F+ M+   + P+ 
Sbjct: 388 IDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDN 447

Query: 373 ITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
           I +     AC+    +  G   H +     Y  D     ++ +++L  R G+ +EA  L 
Sbjct: 448 IGLASAASACAGIKAMRQGLQIHARVYVSGYAADI--SIWNTLVNLYARCGRSEEAFSLF 505

Query: 432 HEMPYEPDAVTWRALL 447
            E+ ++ D +TW  L+
Sbjct: 506 REIEHK-DEITWNGLI 520



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 193/387 (49%), Gaps = 12/387 (3%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H   +  G   +  + N+L++++ K  L+ +A+ +F ++  R+ VSW  M+S Y  + +
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGL 124

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSA 212
             +A  L   M    V P  +  S+VL AC    +    R +H  + K  F S+ FV +A
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNA 184

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           LI +Y   G  + AE VF +M   D V +N++I G AQ    + AL ++  M+ +G   D
Sbjct: 185 LIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPD 244

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
             T+ S+L AC  +  L+ G Q+H ++LK     D I   +LLD+Y KCG +E A  +F+
Sbjct: 245 CVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFN 304

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
              + +V+ W+ M+    Q     ++ ++F  M+ + I PN  T   +L  C+  G +E 
Sbjct: 305 LGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIEL 364

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G     S+    G +        +ID+  + G L +A K++ EM  + D V+W +++   
Sbjct: 365 G-EQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKIL-EMLEKRDVVSWTSMIAGY 422

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTY 477
             H   + A+   K++     QD G +
Sbjct: 423 VQHDFCEEALATFKEM-----QDCGVW 444



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 138/263 (52%), Gaps = 6/263 (2%)

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           ++ ++H   +  G  +D  + + LID+YAK G +  A  VF E+ +RD V W +++ G+A
Sbjct: 61  LVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYA 120

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           Q+    EA  LY +M           L+SVL ACT   L   G  +H  V K  +  +  
Sbjct: 121 QSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETF 180

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + NAL+ +Y   GS + A  VF  M+  D ++++T+ISG AQ G+ + AL++F+ M++S 
Sbjct: 181 VGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSG 240

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
           ++P+ +T+  +L AC+  G ++ G   H   +K     D   E    ++DL  + G ++ 
Sbjct: 241 LRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE--GSLLDLYVKCGDIET 298

Query: 427 AVKLIHEMPYEPDAVTWRALLGA 449
           A   I  +    + V W  +L A
Sbjct: 299 AHD-IFNLGDRTNVVLWNLMLVA 320



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 101/210 (48%), Gaps = 21/210 (10%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           F   R   +A+     M   G + +  T+   I        +++ K VH   +  G   E
Sbjct: 523 FGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSE 582

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
           T + N L++++ K   +E+A+++F +M  RN VSW T+I++        +AL+L   M +
Sbjct: 583 TEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQ 642

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFE-----SDVFV-------RSALIDI 216
           EG++PN  T+  VL AC         H G+++ G       S+V+         + ++DI
Sbjct: 643 EGLKPNDVTFIGVLAACS--------HVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDI 694

Query: 217 YAKLGELRNAECVFNEMP-TRDLVVWNSII 245
             + G+L  A    +EMP T + ++W +++
Sbjct: 695 LGRAGQLDRARRFVDEMPITANAMIWRTLL 724


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/592 (40%), Positives = 354/592 (59%), Gaps = 6/592 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A +  + M+  GV  +  TY  ++  C    A+E  KL+H+H+   G   +  + N L++
Sbjct: 314 AFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALIS 373

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ +   L +A+ LF  MP+R+++SW  +I+ Y   +   +A+ L   M  EGV+P   T
Sbjct: 374 MYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVT 433

Query: 178 YSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +  +L AC    +    + +H  I++ G +S+  + +AL+++Y + G L  A+ VF    
Sbjct: 434 FLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD++ WNS+I G AQ+   + A  L++ M+      D  T  SVL  C     LELG Q
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ 553

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  + +     D+ L NAL++MY +CGSL+DA +VF  +  +DV+SW+ MI G A  G 
Sbjct: 554 IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGE 613

Query: 353 SQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
             +A++LF  M+    +P +  T   +L AC+HAG V +G+  F SM+  YG+ P  EHY
Sbjct: 614 DMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHY 673

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
            C++ LLGRA + QEA  LI++MP+ PDA  W  LLGAC++H N  LA  AA   L L+ 
Sbjct: 674 GCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNA 733

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
           ++P  YILLSN+YA + +WD+VA++R+ M  RGI KEPG SWIEV+  IH F  AD SHP
Sbjct: 734 RNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHP 793

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
           +  +I   LK L  ++   GY PDT +VL DL    +E S+  HSE+LAI +GL+    G
Sbjct: 794 ETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPG 853

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             IRI KNLRICGDCHT +K  +K+  + I+ RD  R+H F++G CSC DYW
Sbjct: 854 TPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 905



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 131/450 (29%), Positives = 237/450 (52%), Gaps = 16/450 (3%)

Query: 66  QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL 125
           Q      D  TY  L++ C  +  + EAK +H  ++  G  P+ FL N+L+NM+VK   +
Sbjct: 19  QPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSV 78

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
            +A  +F +MP R+V+SW ++IS Y       KA +L   M   G  PN  TY ++L AC
Sbjct: 79  LDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTAC 138

Query: 186 DSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
            S   L   +++H  IIK G++ D  V+++L+ +Y K G+L  A  VF  +  RD+V +N
Sbjct: 139 YSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYN 198

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK- 301
           +++G +AQ + V E L L+ +M   G + D+ T  ++L A T  ++L+ G ++H   ++ 
Sbjct: 199 TMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE 258

Query: 302 -YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
             + D+ +  AL+ M  +CG ++ A   F  +  +DV+ ++ +I+ LAQ+G++ EA + +
Sbjct: 259 GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQY 318

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDG---WNHFKSMKKFYGIDPGREHYSCMIDL 417
             M+   +  N  T + +L ACS +  +E G    +H         +  G    + +I +
Sbjct: 319 YRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIG----NALISM 374

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG-- 475
             R G L +A +L + MP + D ++W A++       +   A+   K++ + +   PG  
Sbjct: 375 YARCGDLPKARELFYTMP-KRDLISWNAIIAGYARREDRGEAMRLYKQMQS-EGVKPGRV 432

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           T++ L +  ANS  + +   + + +   GI
Sbjct: 433 TFLHLLSACANSSAYADGKMIHEDILRSGI 462



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 224/424 (52%), Gaps = 9/424 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A +    MQ  G   + +TY  ++  C +   +E  K +H+ ++  G++ +  + N LL
Sbjct: 111 KAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLL 170

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   L  A+ +F  +  R+VVS+ TM+  Y       + L L   M  EG+ P+  
Sbjct: 171 SMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKV 230

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           TY  +L A  +  +L   +++H   ++ G  SD+ V +AL+ +  + G++ +A+  F  +
Sbjct: 231 TYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGI 290

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             RD+VV+N++I   AQ+    EA   Y RM+  G A +++T  S+L AC+    LE G 
Sbjct: 291 ADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGK 350

Query: 294 QVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
            +H H+ +  H  D+ + NAL+ MY +CG L  A  +F  M ++D+ISW+ +I+G A+  
Sbjct: 351 LIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRE 410

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
              EA++L++ M+   +KP  +T + +L AC+++    DG    + + +  GI       
Sbjct: 411 DRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILR-SGIKSNGHLA 469

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN--L 469
           + ++++  R G L EA + + E     D ++W +++     H + + A    +++ N  L
Sbjct: 470 NALMNMYRRCGSLMEA-QNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEEL 528

Query: 470 DPQD 473
           +P +
Sbjct: 529 EPDN 532



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 137/251 (54%), Gaps = 4/251 (1%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           +  + D   AM+    MQ  GV+   VT+  L+  C    A  + K++H  +L  G +  
Sbjct: 406 YARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSN 465

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             L N L+NM+ +   L EAQ +F+    R+V+SW +MI+ +      + A +L   M  
Sbjct: 466 GHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQN 525

Query: 169 EGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           E + P+  T+++VL  C   ++L + +Q+H  I + G + DV + +ALI++Y + G L++
Sbjct: 526 EELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQD 585

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF-AADQSTLTSVLRACT 284
           A  VF+ +  RD++ W ++IGG A   +  +A+ L+ +M+  GF   D ST TS+L AC 
Sbjct: 586 ARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACN 645

Query: 285 GLALLELGTQV 295
              L+  G Q+
Sbjct: 646 HAGLVLEGYQI 656


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 257/677 (37%), Positives = 397/677 (58%), Gaps = 63/677 (9%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPR---AMKAMHAMQCHGVRADS--- 74
           F   +    A  N  +R++S +LD   +F ++  + R       M A   HG R D+   
Sbjct: 255 FERDVVIGTAILNVYSRDTS-VLDTAIKF-FESMIERNEYTWSTMIAALSHGGRIDAAIA 312

Query: 75  VTYAELIKCCLARHA----------VEEAKLVHNHVLSGGFEPETFLV--NILLNMHVKF 122
           V   + +K    R A          +++A+++   +      PE  +V  N L+  +++ 
Sbjct: 313 VYERDPVKSIACRTALITGLAQCGRIDDARILFEQI------PEPIVVSWNALITGYMQN 366

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
            ++ EA+ LFD+MP RN +SW  MI+ Y     +++AL LL  + R G+ P++ + +++ 
Sbjct: 367 GMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIF 426

Query: 183 RACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
            AC +++ L    Q+H   +KVG + + F  +ALI +Y K   +  A  VF+ M T+D+V
Sbjct: 427 FACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIV 486

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKR----------AGFA-ADQST------------- 275
            WNS +    QN  +DEA N +  M            + +A A+QS              
Sbjct: 487 SWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEH 546

Query: 276 -------LTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAM 326
                  LT +L  C  L   ++G Q+H   +K   D +LI+ NAL+ MY KCG   D+ 
Sbjct: 547 ELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGC-ADSR 605

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            +F  M ++D+ +W+T+I+G AQ+G  +EA+K+++ M+ + + PN +T VG+L ACSHAG
Sbjct: 606 RIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAG 665

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            V++GW  FKSM + YG+ P  EHY+CM+DLLGR G +Q A + I++MP EPD V W AL
Sbjct: 666 LVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSAL 725

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           LGACK+H+N ++   AA+K+  ++P + G Y++LSNIY++   W EVAEVRK M+ +G+ 
Sbjct: 726 LGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVI 785

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           KEPGCSW ++  ++H+F   D  H QI++I   L+ L   L   GY PDT +VL D++ E
Sbjct: 786 KEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEE 845

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
           QKE S+ YHSEKLA+ + L++  +G  I+I KNLRICGDCHTF K  + +  + I IRD 
Sbjct: 846 QKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDG 905

Query: 627 IRYHHFQDGNCSCGDYW 643
            R+HHF++G+CSC D+W
Sbjct: 906 NRFHHFRNGSCSCEDFW 922



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 189/379 (49%), Gaps = 17/379 (4%)

Query: 127 EAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC- 185
           +A+ LF++MPERN+VSWT MIS Y   + + KA ++   M REG+ P+   +++ L A  
Sbjct: 176 DARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVK 235

Query: 186 --DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK-LGELRNAECVFNEMPTRDLVVWN 242
              +L +L  L    +K GFE DV + +A++++Y++    L  A   F  M  R+   W+
Sbjct: 236 GLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWS 295

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY 302
           ++I   +    +D A+ +Y+R      A   + +       TGLA         +   + 
Sbjct: 296 TMIAALSHGGRIDAAIAVYERDPVKSIACRTALI-------TGLAQCGRIDDARILFEQI 348

Query: 303 DHDLILN-NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
              ++++ NAL+  Y + G + +A  +F +M  ++ ISW+ MI+G AQNG S+EAL L +
Sbjct: 349 PEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQ 408

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            +  S + P+  ++  + FACS+   +E G     S+    G        + +I + G+ 
Sbjct: 409 ELHRSGMLPSLSSLTSIFFACSNIVALETG-TQVHSLAVKVGCQFNSFACNALITMYGKC 467

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
             ++ A ++   M    D V+W + L A       DL   A     N+  +D  ++  + 
Sbjct: 468 RNMEYARQVFSRM-VTKDIVSWNSFLAALV---QNDLLDEARNTFDNMLSRDDVSWTTII 523

Query: 482 NIYANSQKWDEVAEVRKTM 500
           + YA++++ +E     KTM
Sbjct: 524 SAYAHAEQSNEAMGAFKTM 542



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 163/308 (52%), Gaps = 26/308 (8%)

Query: 101 LSGGFEPETFLVNILLNMHVK-FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           L  GFE +  +   +LN++ +  S+L+ A   F+ M ERN  +W+TMI+A       D A
Sbjct: 251 LKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAA 310

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGII---KVGFESD----VFVRSA 212
           + +     R+ V+           AC + +I     CG I   ++ FE      V   +A
Sbjct: 311 IAVY---ERDPVKS---------IACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNA 358

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           LI  Y + G +  A+ +F++MP R+ + W  +I G+AQN   +EAL L + + R+G    
Sbjct: 359 LITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPS 418

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFS 330
            S+LTS+  AC+ +  LE GTQVH   +K     +    NAL+ MY KC ++E A  VFS
Sbjct: 419 LSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFS 478

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
           RM+ KD++SW++ ++ L QN    EA   F++M +SR   ++ TI+    A +HA    +
Sbjct: 479 RMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM-LSRDDVSWTTIIS---AYAHAEQSNE 534

Query: 391 GWNHFKSM 398
               FK+M
Sbjct: 535 AMGAFKTM 542



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 169/363 (46%), Gaps = 49/363 (13%)

Query: 121 KFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSA 180
           +   + EA+ +FD MP R++++W +MISAYC   M D A +L   +    +R      S 
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSG 105

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR---------------- 224
             R    ++  R++  G++    E +    +A+I  Y + G++                 
Sbjct: 106 YGR-LGRVLEARRVFDGML----ERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSS 160

Query: 225 ---------------NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
                          +A  +F +MP R+LV W  +I G+ +  +  +A +++ +M R G 
Sbjct: 161 WNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGL 220

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGS-LEDAM 326
             DQS   S L A  GL  L++   + V  LK  ++ D+++  A+L++Y +  S L+ A+
Sbjct: 221 LPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAI 280

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
             F  MI+++  +WSTMI+ L+  G    A+ ++E   V  I      I G+    +  G
Sbjct: 281 KFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGL----AQCG 336

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            ++D    F+ +      +P    ++ +I    + G + EA +L  +MP+  + ++W  +
Sbjct: 337 RIDDARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGM 390

Query: 447 LGA 449
           +  
Sbjct: 391 IAG 393



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 109/240 (45%), Gaps = 14/240 (5%)

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
           SA I    +LG +  A  VF+ MP RD++ WNS+I  +  N   D A +LY  +      
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAIS----G 93

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFS 330
            +  T   +L     L  +    +V   +L  + + +  NA++  Y + G +  A  +F 
Sbjct: 94  GNMRTGAILLSGYGRLGRVLEARRVFDGML--ERNTVAWNAMISCYVQNGDITMARRLFD 151

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            M  +DV SW++M++G   +    +A  LFE M    +    + I G     +H      
Sbjct: 152 AMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHG----K 207

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ--EAVKLIH-EMPYEPDAVTWRALL 447
            W+ F  M +  G+ P + +++  +  +   G L   E+++++  +  +E D V   A+L
Sbjct: 208 AWDIFCKMHR-EGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAIL 266


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 257/677 (37%), Positives = 397/677 (58%), Gaps = 63/677 (9%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPR---AMKAMHAMQCHGVRADS--- 74
           F   +    A  N  +R++S +LD   +F ++  + R       M A   HG R D+   
Sbjct: 255 FERDVVIGTAILNVYSRDTS-VLDTAIKF-FESMIERNEYTWSTMIAALSHGGRIDAAIA 312

Query: 75  VTYAELIKCCLARHA----------VEEAKLVHNHVLSGGFEPETFLV--NILLNMHVKF 122
           V   + +K    R A          +++A+++   +      PE  +V  N L+  +++ 
Sbjct: 313 VYERDPVKSIACRTALITGLAQCGRIDDARILFEQI------PEPIVVSWNALITGYMQN 366

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
            ++ EA+ LFD+MP RN +SW  MI+ Y     +++AL LL  + R G+ P++ + +++ 
Sbjct: 367 GMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIF 426

Query: 183 RACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
            AC +++ L    Q+H   +KVG + + F  +ALI +Y K   +  A  VF+ M T+D+V
Sbjct: 427 FACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIV 486

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKR----------AGFA-ADQST------------- 275
            WNS +    QN  +DEA N +  M            + +A A+QS              
Sbjct: 487 SWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEH 546

Query: 276 -------LTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAM 326
                  LT +L  C  L   ++G Q+H   +K   D +LI+ NAL+ MY KCG   D+ 
Sbjct: 547 ELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGC-ADSR 605

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            +F  M ++D+ +W+T+I+G AQ+G  +EA+K+++ M+ + + PN +T VG+L ACSHAG
Sbjct: 606 RIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAG 665

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            V++GW  FKSM + YG+ P  EHY+CM+DLLGR G +Q A + I++MP EPD V W AL
Sbjct: 666 LVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSAL 725

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           LGACK+H+N ++   AA+K+  ++P + G Y++LSNIY++   W EVAEVRK M+ +G+ 
Sbjct: 726 LGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVI 785

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           KEPGCSW ++  ++H+F   D  H QI++I   L+ L   L   GY PDT +VL D++ E
Sbjct: 786 KEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEE 845

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
           QKE S+ YHSEKLA+ + L++  +G  I+I KNLRICGDCHTF K  + +  + I IRD 
Sbjct: 846 QKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDG 905

Query: 627 IRYHHFQDGNCSCGDYW 643
            R+HHF++G+CSC D+W
Sbjct: 906 NRFHHFRNGSCSCEDFW 922



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 189/379 (49%), Gaps = 17/379 (4%)

Query: 127 EAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC- 185
           +A+ LF++MPERN+VSWT MIS Y   + + KA ++   M REG+ P+   +++ L A  
Sbjct: 176 DARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVK 235

Query: 186 --DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK-LGELRNAECVFNEMPTRDLVVWN 242
              +L +L  L    +K GFE DV + +A++++Y++    L  A   F  M  R+   W+
Sbjct: 236 GLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWS 295

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY 302
           ++I   +    +D A+ +Y+R      A   + +       TGLA         +   + 
Sbjct: 296 TMIAALSHGGRIDAAIAVYERDPVKSIACRTALI-------TGLAQCGRIDDARILFEQI 348

Query: 303 DHDLILN-NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
              ++++ NAL+  Y + G + +A  +F +M  ++ ISW+ MI+G AQNG S+EAL L +
Sbjct: 349 PEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQ 408

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            +  S + P+  ++  + FACS+   +E G     S+    G        + +I + G+ 
Sbjct: 409 ELHRSGMLPSLSSLTSIFFACSNIVALETG-TQVHSLAVKVGCQFNSFACNALITMYGKC 467

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
             ++ A ++   M    D V+W + L A       DL   A     N+  +D  ++  + 
Sbjct: 468 RNMEYARQVFSRM-VTKDIVSWNSFLAALV---QNDLLDEARNTFDNMLSRDDVSWTTII 523

Query: 482 NIYANSQKWDEVAEVRKTM 500
           + YA++++ +E     KTM
Sbjct: 524 SAYAHAEQSNEAMGAFKTM 542



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 163/308 (52%), Gaps = 26/308 (8%)

Query: 101 LSGGFEPETFLVNILLNMHVK-FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           L  GFE +  +   +LN++ +  S+L+ A   F+ M ERN  +W+TMI+A       D A
Sbjct: 251 LKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAA 310

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGII---KVGFESD----VFVRSA 212
           + +     R+ V+           AC + +I     CG I   ++ FE      V   +A
Sbjct: 311 IAVY---ERDPVKS---------IACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNA 358

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           LI  Y + G +  A+ +F++MP R+ + W  +I G+AQN   +EAL L + + R+G    
Sbjct: 359 LITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPS 418

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFS 330
            S+LTS+  AC+ +  LE GTQVH   +K     +    NAL+ MY KC ++E A  VFS
Sbjct: 419 LSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFS 478

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
           RM+ KD++SW++ ++ L QN    EA   F++M +SR   ++ TI+    A +HA    +
Sbjct: 479 RMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM-LSRDDVSWTTIIS---AYAHAEQSNE 534

Query: 391 GWNHFKSM 398
               FK+M
Sbjct: 535 AMGAFKTM 542



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 169/363 (46%), Gaps = 49/363 (13%)

Query: 121 KFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSA 180
           +   + EA+ +FD MP R++++W +MISAYC   M D A +L   +    +R      S 
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSG 105

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR---------------- 224
             R    ++  R++  G++    E +    +A+I  Y + G++                 
Sbjct: 106 YGR-LGRVLEARRVFDGML----ERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSS 160

Query: 225 ---------------NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
                          +A  +F +MP R+LV W  +I G+ +  +  +A +++ +M R G 
Sbjct: 161 WNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGL 220

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGS-LEDAM 326
             DQS   S L A  GL  L++   + V  LK  ++ D+++  A+L++Y +  S L+ A+
Sbjct: 221 LPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAI 280

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
             F  MI+++  +WSTMI+ L+  G    A+ ++E   V  I      I G+    +  G
Sbjct: 281 KFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGL----AQCG 336

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            ++D    F+ +      +P    ++ +I    + G + EA +L  +MP+  + ++W  +
Sbjct: 337 RIDDARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGM 390

Query: 447 LGA 449
           +  
Sbjct: 391 IAG 393



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 109/240 (45%), Gaps = 14/240 (5%)

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
           SA I    +LG +  A  VF+ MP RD++ WNS+I  +  N   D A +LY  +      
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAIS----G 93

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFS 330
            +  T   +L     L  +    +V   +L  + + +  NA++  Y + G +  A  +F 
Sbjct: 94  GNMRTGAILLSGYGRLGRVLEARRVFDGML--ERNTVAWNAMISCYVQNGDITMARRLFD 151

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            M  +DV SW++M++G   +    +A  LFE M    +    + I G     +H      
Sbjct: 152 AMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHG----K 207

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ--EAVKLIH-EMPYEPDAVTWRALL 447
            W+ F  M +  G+ P + +++  +  +   G L   E+++++  +  +E D V   A+L
Sbjct: 208 AWDIFCKMHR-EGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAIL 266


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/541 (43%), Positives = 344/541 (63%), Gaps = 9/541 (1%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           EP+ F  NI+L  ++  + +E A++ FDQMP ++  SW TMIS +    M D+A EL + 
Sbjct: 65  EPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLV 124

Query: 166 M-LREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           M +R  V  N    S  + + D L + +QL     +V     V   +A+I  + K G++ 
Sbjct: 125 MPVRNSVSWNAMI-SGYVESGD-LDLAKQL----FEVAPVRSVVAWTAMITGFMKFGKIE 178

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
            AE  F EMP ++LV WN++I G+ +N   +  L L+KRM  +GF  + S+L+SVL  C+
Sbjct: 179 LAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCS 238

Query: 285 GLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            L+ L+LG QVH  + K     ++    +LL MYCKCG LEDA  +F  M QKDV++W+ 
Sbjct: 239 NLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNA 298

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           MISG AQ+G  ++AL LF+ M+   +KP++IT V VL AC+HAGFV+ G  +F SM + Y
Sbjct: 299 MISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDY 358

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           G++   +HY+C++DLLGR GKL EAV LI +MP++P +  +  LLGAC++H+N +LA  A
Sbjct: 359 GVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFA 418

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           AK +LNLDP+    Y+ L+N+YA   +WD VA VR++M+   + K PG SWIEV   +H 
Sbjct: 419 AKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVHE 478

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F   D  HP++  I++ L  L +K+   GY PD  Y L D+  EQK+  +  HSEKLAI 
Sbjct: 479 FRSGDRIHPELAFIHEKLNELERKMRLAGYVPDLEYALHDVGEEQKKQILLRHSEKLAIA 538

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           +GL+ +  G  IR+ KNLR+CGDCH+  K  + +E + I++RD  R+HHF+ G CSCGDY
Sbjct: 539 YGLIRMPLGTPIRVFKNLRVCGDCHSATKYISAIEGRVIIVRDTTRFHHFRQGECSCGDY 598

Query: 643 W 643
           W
Sbjct: 599 W 599



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 103/248 (41%), Gaps = 52/248 (20%)

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA-QNSDVDEALNLYKR 263
           S+V   + +I  + + G+L +A  VF  M  +  V WNS++ G++ +   +  A  L+ R
Sbjct: 3   SNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDR 62

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLE 323
           +                                      + D+   N +L  Y     +E
Sbjct: 63  IP-------------------------------------EPDIFSYNIMLACYLHNADVE 85

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
            A   F +M  KD  SW+TMISG +QNG   +A +LF  M V            V +   
Sbjct: 86  SARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRN---------SVSWNAM 136

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGRE--HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
            +G+VE G       K+ + + P R    ++ MI    + GK++ A K   EMP + + V
Sbjct: 137 ISGYVESG--DLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMK-NLV 193

Query: 442 TWRALLGA 449
           TW A++  
Sbjct: 194 TWNAMIAG 201


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/584 (40%), Positives = 358/584 (61%), Gaps = 36/584 (6%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVV-------------- 141
           VH HV+  GF+   F+ + L++M+ K  L+  A+  FD+MPE+NVV              
Sbjct: 164 VHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSR 223

Query: 142 -----------------SWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
                            SWT MI+ +    ++ +A++L   M  E +  + +T+ +VL A
Sbjct: 224 IEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTA 283

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C  ++ L   +Q+H  II+  ++ ++FV SAL+D+Y K   +++AE VF +M  +++V W
Sbjct: 284 CGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSW 343

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            +++ G+ QN   +EA+ ++  M+  G   D  TL SV+ +C  LA LE G Q H   L 
Sbjct: 344 TAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALV 403

Query: 302 YD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
                 + ++NAL+ +Y KCGS+ED+  +FS M   D +SW+ ++SG AQ G + E L+L
Sbjct: 404 SGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRL 463

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           FESM     KP+ +T +GVL ACS AG V+ G   F+SM K + I P  +HY+CMIDL  
Sbjct: 464 FESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFS 523

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           RAG+L+EA K I++MP+ PDA+ W +LL +C+ HRN ++   AA+ +L L+P +  +YIL
Sbjct: 524 RAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYIL 583

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LS+IYA   KW+EVA +RK MR +G+ KEPGCSWI+   Q+H F+  D S+P  D+I   
Sbjct: 584 LSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSE 643

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
           L+ L  K+V  GY PD N VL D++  +K   + +HSEKLAI FGL+ +  G  IR+ KN
Sbjct: 644 LEKLNYKMVQEGYVPDMNSVLHDVDDSEKIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKN 703

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           LR+CGDCH   K  +K+  + I++RD  R+H F+DG CSCGD+W
Sbjct: 704 LRVCGDCHNATKYISKITQREILVRDAARFHLFKDGRCSCGDFW 747



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/441 (30%), Positives = 226/441 (51%), Gaps = 76/441 (17%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y EL+K C       + K +H H++     PE FL+N L++ + KF  +  A+ +FDQMP
Sbjct: 18  YCELLKHC------RDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMP 71

Query: 137 ERNVVSWTTMISAY----CDAKMND-----------------KALELLIFMLREGVRPNM 175
           +RN+ SW T++S+Y    C  +M                    A     F+L+     N+
Sbjct: 72  QRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNL 131

Query: 176 FTYSAVLR----ACDSLIILR----------QLHCGIIKVGFESDVFVRSALIDIYAKLG 221
             Y+        A  +++IL           Q+H  ++K GF+S VFV S L+D+Y+K G
Sbjct: 132 MLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTG 191

Query: 222 ELRNAECVFNEMPTRDLVV-------------------------------WNSIIGGFAQ 250
            +  A   F+EMP +++V+                               W ++I GF Q
Sbjct: 192 LVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQ 251

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLIL 308
           N    EA++L++ M+      DQ T  SVL AC G+  L+ G QVH ++++ D+  ++ +
Sbjct: 252 NGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFV 311

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            +AL+DMYCKC S++ A +VF +M  K+V+SW+ M+ G  QNGYS+EA+K+F  M+ + I
Sbjct: 312 GSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGI 371

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
           +P+  T+  V+ +C++   +E+G   F       G+       + ++ L G+ G ++++ 
Sbjct: 372 EPDDFTLGSVISSCANLASLEEG-AQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSH 430

Query: 429 KLIHEMPYEPDAVTWRALLGA 449
           +L  EM Y  D V+W AL+  
Sbjct: 431 RLFSEMSY-VDEVSWTALVSG 450



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 167/314 (53%), Gaps = 12/314 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++  FT+    R+   A+     M+   +  D  T+  ++  C    A++E K VH +
Sbjct: 243 TAMIAGFTQNGLDRE---AIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAY 299

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           ++   ++   F+ + L++M+ K   ++ A+ +F +M  +NVVSWT M+  Y     +++A
Sbjct: 300 IIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEA 359

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDI 216
           +++   M   G+ P+ FT  +V+ +C +L  L    Q HC  +  G  S + V +AL+ +
Sbjct: 360 VKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTL 419

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           Y K G + ++  +F+EM   D V W +++ G+AQ    +E L L++ M   GF  D+ T 
Sbjct: 420 YGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTF 479

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLIL----NNALLDMYCKCGSLEDAMSVFSRM 332
             VL AC+   L++ G Q+   ++K +H +I        ++D++ + G LE+A    ++M
Sbjct: 480 IGVLSACSRAGLVQKGNQIFESMIK-EHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKM 538

Query: 333 -IQKDVISWSTMIS 345
               D I W++++S
Sbjct: 539 PFSPDAIGWASLLS 552


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/575 (40%), Positives = 374/575 (65%), Gaps = 9/575 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y  ++  C+++ A+ E + VH H++   + P  +L   L+ ++ K   L +A+ +FD+MP
Sbjct: 93  YDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMP 152

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQ 193
           ++NVVSWT MISAY       +AL L + MLR    PN FT++ +L +C   +     RQ
Sbjct: 153 QKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 212

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H   IK  +ES +FV S+L+D+YAK G + +A  VF+ +P RD+V   +II G+AQ   
Sbjct: 213 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 272

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHDLILNN 310
            +EAL L+++++  G  ++  T  SVL A +GLA L  G QVH HVL+   Y + ++L N
Sbjct: 273 DEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSY-VVLLN 331

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV-SRIK 369
           +L+DMY KCG++  A  +F  M ++  ISW+ M+ G +++G ++E L+LF+ M+  +++K
Sbjct: 332 SLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVK 391

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY-GIDPGREHYSCMIDLLGRAGKLQEAV 428
           P+ IT + VL  CSH    + G   F +M     GI+P   HY C++DLLGRAG+++EA 
Sbjct: 392 PDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAF 451

Query: 429 KLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
             I +MP+ P A  W +LLG+C+VH + ++ I   +K+L L+P++ G Y++LSN+YA++ 
Sbjct: 452 DFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAG 511

Query: 489 KWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLV 548
           KW+++  +R  M+ + +TKEPG SW+E+++ +H F+ +D +HP+ +++ K +K L  K  
Sbjct: 512 KWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFK 571

Query: 549 GVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHT 608
             GY PD + VL D++ EQKE  +  HSEKLA+ FGL++  +G TIR+ KNLRIC DCH+
Sbjct: 572 EDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHS 631

Query: 609 FAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           FAK  +++  +T+++RD  R+H+   G CSCGDYW
Sbjct: 632 FAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 666



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 141/265 (53%), Gaps = 8/265 (3%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           T+A ++  C      E  + +H+  +   +E   F+ + LL+M+ K   + +A  +F  +
Sbjct: 193 TFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCL 252

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---R 192
           PER+VV+ T +IS Y    ++++AL+L   +  EG+  N  TY++VL A   L  L   +
Sbjct: 253 PERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGK 312

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           Q+H  +++ G  S V + ++LID+Y+K G +  A  +F+ MP R  + WN+++ G++++ 
Sbjct: 313 QVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHG 372

Query: 253 DVDEALNLYKRMKRAG-FAADQSTLTSVLRACTGLALLELGTQVHVHVLK----YDHDLI 307
              E L L+K M+       D  T  +VL  C+   L ++G ++  +++      + D+ 
Sbjct: 373 MAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIG 432

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRM 332
               ++D+  + G +E+A     +M
Sbjct: 433 HYGCVVDLLGRAGRVEEAFDFIKKM 457



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 99/207 (47%), Gaps = 11/207 (5%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+K    +Q  G+ ++SVTYA ++       A+   K VH+HVL  G      L+N L++
Sbjct: 276 ALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLID 335

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMF 176
           M+ K   +  A+ +FD MPER  +SW  M+  Y    M  + LEL   M  E  V+P+  
Sbjct: 336 MYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSI 395

Query: 177 TYSAVLRACD-------SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           TY AVL  C         L I   +  G  K G E D+     ++D+  + G +  A   
Sbjct: 396 TYLAVLSGCSHGQLEDMGLEIFYNMVNG--KDGIEPDIGHYGCVVDLLGRAGRVEEAFDF 453

Query: 230 FNEMP-TRDLVVWNSIIGGFAQNSDVD 255
             +MP      +W S++G    +SDV+
Sbjct: 454 IKKMPFVPTAAIWGSLLGSCRVHSDVE 480


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/584 (40%), Positives = 361/584 (61%), Gaps = 6/584 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   G  A    Y   I  C+ R A+ E + VH  +++  + P  FL   L+ M+V+   
Sbjct: 1   MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 60

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L++A+ + D+MPER+VVSWTTMIS Y   + + +AL+L I MLR G  PN +T + VL +
Sbjct: 61  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 120

Query: 185 CD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C    S+   +Q+H  ++K  FES +FV S+L+D+YAK   ++ A  VF+ +P RD+V  
Sbjct: 121 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSC 180

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            +II G+AQ    +EAL+L++++   G   +  T T+++ A +GLA L+ G QVH  +L+
Sbjct: 181 TAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILR 240

Query: 302 YDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
            +      L N+L+DMY KCG L  +  VF  M+++ V+SW+ M+ G  ++G   E + L
Sbjct: 241 KELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISL 300

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F+ +    +KP+ +T++ VL  CSH G V++G + F ++ K         HY C+IDLLG
Sbjct: 301 FKDLH-KEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLG 359

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           R+G+L++A+ LI  MP+E     W +LLGAC+VH N  +    A+K+L ++P++ G Y++
Sbjct: 360 RSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVI 419

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LSNIYA +  W +V +VRK M  + +TKEPG SWI ++K IH F+ ++  HP    IN  
Sbjct: 420 LSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAK 479

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
           +K +   +   G+ PD + VL D++ EQKE  +  HSEKLAI FGLM+   G TIR+ KN
Sbjct: 480 IKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKN 539

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           LRIC DCH FAK  +K+  + I +RD  R+H    GNC+CGDYW
Sbjct: 540 LRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 143/342 (41%), Gaps = 51/342 (14%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     +   G++ + VT+  L+       +++  K VH  +L         L N L++
Sbjct: 196 ALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLID 255

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L  ++ +FD M ER+VVSW  M+  Y    +  + + L   + +E V+P+  T
Sbjct: 256 MYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVT 314

Query: 178 YSAVLRACDSLIILRQLHCGIIKVG---FESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             AVL  C         H G++  G   F++ V  +SAL+                    
Sbjct: 315 LLAVLSGCS--------HGGLVDEGLDIFDTVVKEQSALLHTGH---------------- 350

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
                 +  II    ++  +++ALNL + M    F +  S   S+L AC   A + +G  
Sbjct: 351 ------YGCIIDLLGRSGRLEKALNLIENMP---FESTPSIWGSLLGACRVHANVHVGEL 401

Query: 295 VHVHVLKYDHDLILNNALL-DMYCKCGSLEDAMSVFSRMIQKDVI-----SWSTMISGLA 348
           V   +L+ + +   N  +L ++Y   G  +D   V   M++K V      SW  ++  + 
Sbjct: 402 VAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSW-IILDKVI 460

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
              +S E     +    ++IK  ++ I         AGFV D
Sbjct: 461 HTFHSSERFHPSKKDINAKIKEIFVDIKA-------AGFVPD 495


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/572 (40%), Positives = 363/572 (63%), Gaps = 5/572 (0%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           + E+++ C    AV EAK  H   +    + +  L N+L+N + K   +E A+ +FD M 
Sbjct: 66  FIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGML 125

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS---LIILRQ 193
           ER++VSW TMI  Y   +M  +AL++   M  EG + + FT S+VL AC +    +  ++
Sbjct: 126 ERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKK 185

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           LHC  +K   + +++V +AL+D+YAK G + +A  VF  M  +  V W+S++ G+ Q+ +
Sbjct: 186 LHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKN 245

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNA 311
            +EAL LY+R +R     +Q TL+SV+ AC+ LA L  G Q+H  + K  +  ++ + ++
Sbjct: 246 YEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASS 305

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
            +DMY KCGSL ++  +FS + +K++  W+T+ISG A++   +E + LFE M+   + PN
Sbjct: 306 AVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPN 365

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            +T   +L  C H G VE+G   FK M+  YG+ P   HYSCM+D+LGRAG L EA +LI
Sbjct: 366 EVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELI 425

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
             +P+EP A  W +LL +C+V +N +LA  AAKK+  L+P++ G ++LLSNIYA +++W+
Sbjct: 426 KSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYAANKQWE 485

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
           E+A+ RK +R   + K  G SWI++  ++H F V +SSHP+I +I   L +L+ +L   G
Sbjct: 486 EIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLDNLVIELRKFG 545

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           Y P   + L D+E  +KE+ +  HSEKLA+VFGLM L +G T+RI KNLRIC DCH F K
Sbjct: 546 YKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPEGSTVRIMKNLRICVDCHEFMK 605

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             +    + I++RD  R+HHF DG+CSCG++W
Sbjct: 606 AASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 159/293 (54%), Gaps = 11/293 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++  +TR    R    A+     M+  G +    T + ++  C A     E K +H  
Sbjct: 133 NTMIGLYTR---NRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKLHCL 189

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
            +    +   ++   LL+++ K  ++ +A  +F+ M +++ V+W++M++ Y  +K  ++A
Sbjct: 190 SMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEA 249

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDI 216
           L L     R  +  N FT S+V+ AC +L  L   +Q+H  I K GF S+VFV S+ +D+
Sbjct: 250 LLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDM 309

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           YAK G LR +  +F+E+  +++ +WN+II GFA+++   E + L+++M++ G   ++ T 
Sbjct: 310 YAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTF 369

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDA 325
           +S+L  C    L+E G +    +++  + L  N    + ++D+  + G L +A
Sbjct: 370 SSLLSVCGHTGLVEEGRRF-FKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEA 421



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 83/187 (44%), Gaps = 21/187 (11%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           +  T + +I  C    A+ E K +H  +   GF    F+ +  ++M+ K   L E+ ++F
Sbjct: 264 NQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIF 323

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192
            ++ E+N+  W T+IS +       + + L   M ++G+ PN  T+S++L  C       
Sbjct: 324 SEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCG------ 377

Query: 193 QLHCGIIK------------VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV- 239
             H G+++             G   +V   S ++DI  + G L  A  +   +P      
Sbjct: 378 --HTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTAS 435

Query: 240 VWNSIIG 246
           +W S++ 
Sbjct: 436 IWGSLLA 442


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/581 (41%), Positives = 359/581 (61%), Gaps = 7/581 (1%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G      TY  LI  C+   ++   K + N+++  GFEP+ ++ N +L MHVK  ++ +A
Sbjct: 127 GFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMMIDA 186

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
             LFD+MP RN VSW T+IS Y D+    +A  L I M  E       T++ ++RA   L
Sbjct: 187 CRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMIRASAGL 246

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
            I+   RQLH   IK G   D+FV  ALID+Y+K G L +A CVF+EMP + +V WNSII
Sbjct: 247 EIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSII 306

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YD 303
            G+A +   +EAL+LY  M+ +G   D  T + ++R C+ LA +    QVH  +++  + 
Sbjct: 307 AGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFG 366

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D++ N AL+D Y K G ++DA  VF RM  +++ISW+ +I+G   +G+ +EA+ +FE M
Sbjct: 367 LDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKM 426

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
               + PN++T + VL ACS +G  E GW  F+SM + + + P   H++CMI+LLGR G 
Sbjct: 427 LREGMMPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGL 486

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L EA  LI + P++P A  W ALL AC+VH N +L   AA+K+  ++P+    YI+L NI
Sbjct: 487 LDEAYALIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKLSNYIVLLNI 546

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           Y +S K  E A+V +T++ +G+   P CSWIEVN Q HAF   D  H QI+K+   +  L
Sbjct: 547 YNSSGKLKEAADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDKHHVQIEKVVGKVDEL 606

Query: 544 IQKLVGVGYAPD-TNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
           +  +  +GY P+  N++L D++ E +E    YHSEKLAI +GL++  +   ++I ++ RI
Sbjct: 607 MLNISKLGYVPEEQNFMLPDVD-ENEEKIRMYHSEKLAIAYGLLNTLEKTPLQIVQSHRI 665

Query: 603 CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           C DCH+  KL A +  + IVIRD  R+HHF+DG+CSCGDYW
Sbjct: 666 CSDCHSVIKLIAMITKREIVIRDASRFHHFRDGSCSCGDYW 706



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 170/316 (53%), Gaps = 10/316 (3%)

Query: 159 ALELL-IFMLREGVRPNMFTYSAVLRACDSLIILRQLH--CG-IIKVGFESDVFVRSALI 214
           ALE+  IF L +G      TY A++ AC  L  +R +   C  ++  GFE D ++R+ ++
Sbjct: 115 ALEMFEIFELEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVL 174

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
            ++ K G + +A  +F+EMP R+ V W +II G+  + +  EA  L+  M+   +     
Sbjct: 175 LMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPR 234

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           T  +++RA  GL ++  G Q+H   +K     D+ ++ AL+DMY KCGSLEDA  VF  M
Sbjct: 235 TFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEM 294

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
             K ++ W+++I+G A +GYS+EAL L+  M+ S +K ++ T   ++  CS    V    
Sbjct: 295 PDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAK 354

Query: 393 N-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
             H   ++  +G+D      + ++D   + GK+ +A  +   M    + ++W AL+    
Sbjct: 355 QVHASLVRNGFGLDVVAN--TALVDFYSKWGKVDDARHVFDRMSCR-NIISWNALIAGYG 411

Query: 452 VHRNTDLAICAAKKIL 467
            H + + AI   +K+L
Sbjct: 412 NHGHGEEAIDMFEKML 427



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 133/285 (46%), Gaps = 43/285 (15%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+   H M+  GV+ D  T++ +I+ C    +V  AK VH  ++  GF  +      L++
Sbjct: 318 ALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANTALVD 377

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            + K+  +++A+ +FD+M  RN++SW  +I+ Y +    ++A+++   MLREG+ PN  T
Sbjct: 378 FYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVT 437

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           + AVL AC           G+ + G+E                        +F  M TRD
Sbjct: 438 FLAVLSACSI--------SGLFERGWE------------------------IFQSM-TRD 464

Query: 238 LVV------WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
             V      +  +I    +   +DEA   Y  +++A F    +   ++LRAC     LEL
Sbjct: 465 HKVKPRAMHFACMIELLGREGLLDEA---YALIRKAPFQPTANMWAALLRACRVHGNLEL 521

Query: 292 GTQVHVHVLKYDHDLILNN-ALLDMYCKCGSLEDAMSVFSRMIQK 335
           G      +   + + + N   LL++Y   G L++A  VF  + +K
Sbjct: 522 GKFAAEKLYGMEPEKLSNYIVLLNIYNSSGKLKEAADVFQTLKRK 566


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/575 (40%), Positives = 373/575 (64%), Gaps = 9/575 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y  ++  C+++ A+ E + VH H++   + P  +L   L+ ++ K   L +A+ +FD+MP
Sbjct: 65  YDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMP 124

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQ 193
           +RNVVSWT MISAY       +AL L + MLR    PN FT++ +L +C   +     RQ
Sbjct: 125 QRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 184

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H   IK  +ES +FV S+L+D+YAK G + +A  VF+ +P RD+V   +II G+AQ   
Sbjct: 185 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 244

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHDLILNN 310
            +EAL L+++++  G  ++  T  SVL A +GLA L  G QVH HVL+   Y + ++L N
Sbjct: 245 DEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSY-VVLLN 303

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV-SRIK 369
           +L+DMY KCG++  A  +F  M ++  ISW+ M+ G +++G ++E L+LF+ M+  +++K
Sbjct: 304 SLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVK 363

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY-GIDPGREHYSCMIDLLGRAGKLQEAV 428
           P+ IT + VL  CSH    + G   F +M     GI+P   HY C++DLLGRAG+++EA 
Sbjct: 364 PDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAF 423

Query: 429 KLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
             I +MP+ P A  W +LLG+C+VH + ++ I   +K+L L+P++ G Y++LSN+YA++ 
Sbjct: 424 DFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAG 483

Query: 489 KWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLV 548
           KW+++  +R  M+ + +TKEPG SW+E+++ +H F+ +D +HP+ +++   +K L  K  
Sbjct: 484 KWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFK 543

Query: 549 GVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHT 608
             GY PD + VL D++ EQKE  +  HSEKLA+ FGL++  +G TIR+ KNLRIC DCH+
Sbjct: 544 EDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHS 603

Query: 609 FAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           FAK  +++  +T+++RD  R+H+   G CSCGDYW
Sbjct: 604 FAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 638



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 141/265 (53%), Gaps = 8/265 (3%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           T+A ++  C      E  + +H+  +   +E   F+ + LL+M+ K   + +A  +F  +
Sbjct: 165 TFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCL 224

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---R 192
           PER+VV+ T +IS Y    ++++AL+L   +  EG+  N  TY++VL A   L  L   +
Sbjct: 225 PERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGK 284

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           Q+H  +++ G  S V + ++LID+Y+K G +  A  +F+ MP R  + WN+++ G++++ 
Sbjct: 285 QVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHG 344

Query: 253 DVDEALNLYKRMKRAG-FAADQSTLTSVLRACTGLALLELGTQVHVHVLK----YDHDLI 307
              E L L+K M+       D  T  +VL  C+   L ++G ++  +++      + D+ 
Sbjct: 345 MAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIG 404

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRM 332
               ++D+  + G +E+A     +M
Sbjct: 405 HYGCVVDLLGRAGRVEEAFDFIKKM 429



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 99/207 (47%), Gaps = 11/207 (5%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+K    +Q  G+ ++SVTYA ++       A+   K VH+HVL  G      L+N L++
Sbjct: 248 ALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLID 307

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMF 176
           M+ K   +  A+ +FD MPER  +SW  M+  Y    M  + LEL   M  E  V+P+  
Sbjct: 308 MYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSI 367

Query: 177 TYSAVLRACD-------SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           TY AVL  C         L I   +  G  K G E D+     ++D+  + G +  A   
Sbjct: 368 TYLAVLSGCSHGQLEDMGLEIFYNMVNG--KDGIEPDIGHYGCVVDLLGRAGRVEEAFDF 425

Query: 230 FNEMP-TRDLVVWNSIIGGFAQNSDVD 255
             +MP      +W S++G    +SDV+
Sbjct: 426 IKKMPFVPTAAIWGSLLGSCRVHSDVE 452


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/570 (40%), Positives = 363/570 (63%), Gaps = 5/570 (0%)

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
           E+++ C    AV EAK  H  ++    E +  L+N+L+N + K   +E A+ +FD M ER
Sbjct: 66  EILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLER 125

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLH 195
           ++VSW TMI  Y   +M  +AL++ + M  EG + + FT S+VL AC      +  ++LH
Sbjct: 126 SLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLH 185

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
           C  +K   + +++V +AL+D+YAK G +++A  VF  M  +  V W+S++ G+ QN + +
Sbjct: 186 CLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYE 245

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
           EAL LY+R +R     +Q TL+SV+ AC+ LA L  G Q+H  + K  +  ++ + ++ +
Sbjct: 246 EALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAV 305

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           DMY KCGSL ++  +FS + +K++  W+T+ISG A++   +E + LFE M+   + PN +
Sbjct: 306 DMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEV 365

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
           T   +L  C H G VE+G   FK M+  YG+ P   HYSCM+D+LGRAG L EA +LI  
Sbjct: 366 TFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKS 425

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
           +P++P A  W +LL +C+V++N +LA  AA+K+  L+P++ G ++LLSNIYA +++W+E+
Sbjct: 426 IPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEI 485

Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYA 553
           A+ RK +R   + K  G SWI++  ++H F+V +S HP+I +I   L +L+ K    GY 
Sbjct: 486 AKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYK 545

Query: 554 PDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLT 613
           P   + L D+E  +KE+ +  HSEKLA+VFGLM L +   +RI KNLRIC DCH F K  
Sbjct: 546 PSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAA 605

Query: 614 AKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +    + I++RD  R+HHF DG+CSCGD+W
Sbjct: 606 SMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 158/293 (53%), Gaps = 11/293 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++  +TR    R    A+     M+  G +    T + ++  C       E K +H  
Sbjct: 131 NTMIGLYTR---NRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCL 187

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
            +    +   ++   LL+++ K  ++++A  +F+ M +++ V+W++M++ Y   K  ++A
Sbjct: 188 SVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEA 247

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDI 216
           L L     R  +  N FT S+V+ AC +L  L   +Q+H  I K GF S+VFV S+ +D+
Sbjct: 248 LLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDM 307

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           YAK G LR +  +F+E+  ++L +WN+II GFA+++   E + L+++M++ G   ++ T 
Sbjct: 308 YAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTF 367

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDA 325
           +S+L  C    L+E G +    +++  + L  N    + ++D+  + G L +A
Sbjct: 368 SSLLSVCGHTGLVEEGRRF-FKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEA 419



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 94/214 (43%), Gaps = 31/214 (14%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           +  T + +I  C    A+ E K +H  +   GF    F+ +  ++M+ K   L E+ ++F
Sbjct: 262 NQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIF 321

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192
            ++ E+N+  W T+IS +       + + L   M ++G+ PN  T+S++L  C       
Sbjct: 322 SEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCG------ 375

Query: 193 QLHCGIIK------------VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV- 239
             H G+++             G   +V   S ++DI  + G L  A  +   +P      
Sbjct: 376 --HTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTAS 433

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           +W S++           +  +YK ++ A  AA++
Sbjct: 434 IWGSLLA----------SCRVYKNLELAEVAAEK 457


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/595 (38%), Positives = 369/595 (62%), Gaps = 10/595 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           + +     M   G+  D  T   +   C     +   + VH   +   F  E    N LL
Sbjct: 279 KGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLL 338

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   L+ A+V+F +M  R+VVS+T+MI+ Y    +  +A++L   M  EG+ P+++
Sbjct: 339 DMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVY 398

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T +AVL  C    +L   +++H  I +     D+FV +AL+D+YAK G +R AE VF+EM
Sbjct: 399 TVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEM 458

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRM---KRAGFAADQSTLTSVLRACTGLALLE 290
             +D++ WN++IGG+++N   +EAL+L+  +   KR  F+ D+ T+  VL AC  L+  +
Sbjct: 459 RVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKR--FSPDERTVACVLPACASLSAFD 516

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G ++H ++++  Y  D  + N+L+DMY KCG+L  A  +F  +  KD++SW+ MI+G  
Sbjct: 517 KGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYG 576

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
            +G+ +EA+ LF  M+ + I+P+ I+ V +L+ACSH+G V++GW  F  M+    I+P  
Sbjct: 577 MHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTV 636

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           EHY+C++D+L R G L +A + I  MP  PDA  W ALL  C++H +  LA   A+K+  
Sbjct: 637 EHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFE 696

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           L+P++ G Y+L++NIYA ++KW+EV  +RK +  RG+ K PGCSWIE+  +++ F   DS
Sbjct: 697 LEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDS 756

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
           S+P+ +KI   L+ +  +++  GY+P T Y L D E  +KE+++  HSEKLA+  G++S 
Sbjct: 757 SNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISS 816

Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             GK IR+ KNLR+CGDCH  AK  +K+  + IV+RD  R+H F+DG+CSC  +W
Sbjct: 817 GHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 124/433 (28%), Positives = 219/433 (50%), Gaps = 13/433 (3%)

Query: 24  TITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKC 83
           T++    S  T  R+ +       RFC   +L  A+K +H      +  D  T   +++ 
Sbjct: 46  TVSDRADSITTFDRSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDI--DPRTLCSVLQL 103

Query: 84  CLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSW 143
           C    ++++ K V N +   GF  ++ L + L  M+     L+EA  +FDQ+     + W
Sbjct: 104 CADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFW 163

Query: 144 TTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIK 200
             +++    +     ++ L   M+  GV  + +T+S V ++  SL  +    QLH  I+K
Sbjct: 164 NILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILK 223

Query: 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNL 260
            GF     V ++L+  Y K   + +A  VF+EM  RD++ WNSII G+  N   ++ L++
Sbjct: 224 SGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSV 283

Query: 261 YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCK 318
           + +M  +G   D +T+ SV   C    L+ LG  VH   +K  +  +    N LLDMY K
Sbjct: 284 FVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSK 343

Query: 319 CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
           CG L+ A  VF  M  + V+S+++MI+G A+ G + EA+KLFE M+   I P+  T+  V
Sbjct: 344 CGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAV 403

Query: 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY--SCMIDLLGRAGKLQEAVKLIHEMPY 436
           L  C+    +++G    + +K+    D G + +  + ++D+  + G ++EA  +  EM  
Sbjct: 404 LNCCARNRLLDEGKRVHEWIKE---NDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRV 460

Query: 437 EPDAVTWRALLGA 449
           + D ++W  ++G 
Sbjct: 461 K-DIISWNTVIGG 472


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/557 (43%), Positives = 344/557 (61%), Gaps = 5/557 (0%)

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
           + + VH  + + G      + N LL M+V+   LE+AQ LFD M +R+  SW+ ++  Y 
Sbjct: 68  QVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYA 127

Query: 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVF 208
                     +   +LR G   + ++   V+RAC  L  L   R +HC  +K G +   F
Sbjct: 128 KVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHF 187

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           V + L+D+YA+   + +A  +F +M  RDL  W  +IG  A++    E+L  + RM+  G
Sbjct: 188 VCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQG 247

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAM 326
              D+  L +V+ AC  L  +     +H ++    Y  D+IL  A++DMY KCGS+E A 
Sbjct: 248 IVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESAR 307

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            +F RM  ++VI+WS MI+    +G  ++AL+LF  M  S I PN IT V +L+ACSHAG
Sbjct: 308 WIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAG 367

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            +E+G   F SM   YG+ P  +HY+CM+DLLGRAG+L EA+++I  MP E D V W AL
Sbjct: 368 LIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGAL 427

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           LGAC++HR+ DLA   A+ +L L  Q PG Y+LLSNIYAN+ KW+++A+ R  M   G+ 
Sbjct: 428 LGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLR 487

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           K PG +WIEV ++++ F V D +HP+ ++I K LK L +KL   GY PDTN VL D++ E
Sbjct: 488 KIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDVDEE 547

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
            K+  +  HSEKLAI FGL+ L QG  IRI KNLR+CGDCHTF K  + +E +TI++RD 
Sbjct: 548 VKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKFVSLIEQKTIIVRDA 607

Query: 627 IRYHHFQDGNCSCGDYW 643
            R+HHF++G CSC DYW
Sbjct: 608 KRFHHFKEGVCSCRDYW 624



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 150/290 (51%), Gaps = 14/290 (4%)

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           + + L +C +L  +RQ+H  I   G   ++ V + L+ +Y + G L +A+ +F+ M  R 
Sbjct: 56  FRSSLLSCRNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRH 115

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
              W+ I+GG+A+  +      +++ + R+G   D  +   V+RAC  L  L+ G  +H 
Sbjct: 116 PYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHC 175

Query: 298 HVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
             LK   D+   +   L+DMY +C  +EDA  +F +M ++D+ +W+ MI  LA++G   E
Sbjct: 176 ITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVE 235

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF-----YGIDPGREH 410
           +L  F+ M+   I P+ + +V V++AC+  G +    N  K++  +     Y +D     
Sbjct: 236 SLVFFDRMRNQGIVPDKVALVTVVYACAKLGAM----NKAKAIHAYINGTGYSLDVILG- 290

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            + MID+  + G ++ A  +   M    + +TW A++ A   H   + A+
Sbjct: 291 -TAMIDMYAKCGSVESARWIFDRMQVR-NVITWSAMIAAYGYHGQGEKAL 338



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 168/330 (50%), Gaps = 10/330 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G   D  +   +I+ C     ++  +L+H   L  G +   F+   L++M+ +  ++E+A
Sbjct: 146 GAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDA 205

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
             +F +M +R++ +WT MI A  ++ +  ++L     M  +G+ P+      V+ AC  L
Sbjct: 206 HQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKL 265

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             +   + +H  I   G+  DV + +A+ID+YAK G + +A  +F+ M  R+++ W+++I
Sbjct: 266 GAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMI 325

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV---LKY 302
             +  +   ++AL L+  M R+G   ++ T  S+L AC+   L+E G +    +      
Sbjct: 326 AAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGV 385

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFE 361
             D+     ++D+  + G L++A+ +   M ++KD + W  ++     + +   A ++  
Sbjct: 386 TPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVAR 445

Query: 362 S-MKVSRIKPNYITIVGVLFACSHAGFVED 390
           S +K+   KP +  ++  ++A  +AG  ED
Sbjct: 446 SLLKLQSQKPGHYVLLSNIYA--NAGKWED 473



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 109/216 (50%), Gaps = 25/216 (11%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  G+  D V    ++  C    A+ +AK +H ++   G+  +  L   +++M+ K   
Sbjct: 243 MRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGS 302

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +E A+ +FD+M  RNV++W+ MI+AY      +KALEL   MLR G+ PN  T+ ++L A
Sbjct: 303 VESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYA 362

Query: 185 CDSLIILRQLHCGIIKVG---FES---------DVFVRSALIDIYAKLGELRNAECVFNE 232
           C         H G+I+ G   F S         DV   + ++D+  + G L  A  +   
Sbjct: 363 CS--------HAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEG 414

Query: 233 MPT-RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
           MP  +D V+W +++G       +   L+L +R+ R+
Sbjct: 415 MPVEKDEVLWGALLGA----CRIHRHLDLAERVARS 446


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/555 (43%), Positives = 354/555 (63%), Gaps = 10/555 (1%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           VH HV++ G   +  + N LL  + +   +++A  LFD +  R+  +W+ M+  +  AK 
Sbjct: 22  VHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGF--AKA 79

Query: 156 NDKALELLIF--MLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVR 210
            D A     F  +LR GV P+ +T   V+R C     L I R +H  ++K G  SD FV 
Sbjct: 80  GDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVC 139

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
           ++L+D+YAK   + +A+ +F  M ++DLV W  +IG +A + +  E+L L+ RM+  G  
Sbjct: 140 ASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA-DCNAYESLVLFDRMREEGVV 198

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSV 328
            D+  + +V+ AC  L  +      + ++++  +  D+IL  A++DMY KCGS+E A  V
Sbjct: 199 PDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREV 258

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           F RM +K+VISWS MI+    +G  ++A+ LF  M    I PN +T V +L+ACSHAG +
Sbjct: 259 FDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLI 318

Query: 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
           E+G   F SM + + + P  +HY+CM+DLLGRAG+L EA++LI  M  E D   W ALLG
Sbjct: 319 EEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLG 378

Query: 449 ACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
           AC++H   +LA  AA  +L L PQ+PG Y+LLSNIYA + KW++VA+ R  M  R + K 
Sbjct: 379 ACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKI 438

Query: 509 PGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQK 568
           PG +WIEV+ + + F+V D SHPQ  +I + L  LI+KL   GY PDT++VLQD+E E K
Sbjct: 439 PGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEEVK 498

Query: 569 EDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIR 628
           ++ +  HSEKLAI FGL+++ +G+ IRI KNLR+CGDCHTF+K+ + +  ++I++RD  R
Sbjct: 499 QEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRDANR 558

Query: 629 YHHFQDGNCSCGDYW 643
           +HHF DG CSCGDYW
Sbjct: 559 FHHFNDGTCSCGDYW 573



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 144/287 (50%), Gaps = 15/287 (5%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           +L  C ++  +RQ+H  ++  G   D+ + + L+  YA+   + +A  +F+ +  RD   
Sbjct: 9   LLLRCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKT 68

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           W+ ++GGFA+  D       ++ + R G   D  TL  V+R C     L++G  +H  VL
Sbjct: 69  WSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVL 128

Query: 301 KYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ-NGYSQEAL 357
           K+    D  +  +L+DMY KC  +EDA  +F RM+ KD+++W+ MI   A  N Y  E+L
Sbjct: 129 KHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAY--ESL 186

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE----HYSC 413
            LF+ M+   + P+ + +V V+ AC+  G +     H       Y +  G        + 
Sbjct: 187 VLFDRMREEGVVPDKVAMVTVVNACAKLGAM-----HRARFANDYIVRNGFSLDVILGTA 241

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           MID+  + G ++ A ++   M  E + ++W A++ A   H     AI
Sbjct: 242 MIDMYAKCGSVESAREVFDRMK-EKNVISWSAMIAAYGYHGRGKDAI 287



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 58/293 (19%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  GV  D V    ++  C    A+  A+  +++++  GF  +  L   +++M+ K   
Sbjct: 192 MREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGS 251

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +E A+ +FD+M E+NV+SW+ MI+AY        A++L   ML   + PN  T+ ++L A
Sbjct: 252 VESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYA 311

Query: 185 CDSLIILRQLHCGIIKVGF------------ESDVFVRSALIDIYAKLGELRNAECVFNE 232
           C         H G+I+ G               DV   + ++D+  + G L  A  +   
Sbjct: 312 CS--------HAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEA 363

Query: 233 MPT-RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           M   +D  +W++++G          A  ++ +M+ A  AA+              +LLEL
Sbjct: 364 MTVEKDERLWSALLG----------ACRIHSKMELAEKAAN--------------SLLEL 399

Query: 292 GTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWS 341
             Q         H ++L+N    +Y K G  E        M Q   K +  W+
Sbjct: 400 QPQ------NPGHYVLLSN----IYAKAGKWEKVAKFRDMMTQRKLKKIPGWT 442


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/640 (38%), Positives = 385/640 (60%), Gaps = 18/640 (2%)

Query: 15  SSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADS 74
           SS+     +++ P     N I  N++ L+      C   +L    +A+H + C       
Sbjct: 26  SSRVPVSFVSLNPSANLMNDIKGNNNQLIQSL---CKGGNLK---QAIHLLCCEP-NPTQ 78

Query: 75  VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ 134
            T+  LI  C  ++++ +   VH  ++S GF+ + FL   L+NM+ +   ++ A+ +FD+
Sbjct: 79  RTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDE 138

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC-------DS 187
             ER +  W  +  A        + L+L + M   G+  + FTY+ VL+AC         
Sbjct: 139 TRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSP 198

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L   +++H  I++ G+E+++ V + L+D+YAK G +  A  VF  MPT++ V W+++I  
Sbjct: 199 LQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIAC 258

Query: 248 FAQNSDVDEALNLYKRMKRAGF--AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD 305
           FA+N    +AL L++ M         +  T+ +VL+AC GLA LE G  +H ++L+   D
Sbjct: 259 FAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLD 318

Query: 306 LILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            IL   NAL+ MY +CG +     VF  M  +DV+SW+++IS    +G+ ++A+++FE+M
Sbjct: 319 SILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENM 378

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
                 P+YI+ + VL ACSHAG VE+G   F+SM   Y I PG EHY+CM+DLLGRA +
Sbjct: 379 IHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANR 438

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L EA+KLI +M +EP    W +LLG+C++H N +LA  A+  +  L+P++ G Y+LL++I
Sbjct: 439 LDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLLADI 498

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           YA ++ W E   V K + ARG+ K PGCSWIEV +++++F   D  +PQI++I+  L  L
Sbjct: 499 YAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKL 558

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
             ++   GY P TN VL DL+ E+KE  +  HSEKLA+ FGL++  +G+TIRIRKNLR+C
Sbjct: 559 SNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTVKGETIRIRKNLRLC 618

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            DCH   K  +K  N+ I++RD  R+HHF+DG CSCGDYW
Sbjct: 619 EDCHAVTKFISKFANREILVRDVNRFHHFKDGVCSCGDYW 658


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/626 (38%), Positives = 368/626 (58%), Gaps = 40/626 (6%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+K   ++Q  G++ D   +    K C         K VH+     G   + F+ N L++
Sbjct: 148 AIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIH 207

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            + K   +E A+ +FD +  R+VVSWT++ S Y       K +++   M   GV+PN  T
Sbjct: 208 AYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMT 267

Query: 178 YSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            S++L AC  L  L+   ++H   ++ G   ++FV SAL+ +YAK   +R A  VF+ MP
Sbjct: 268 VSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMP 327

Query: 235 TRDLV-----------------------------------VWNSIIGGFAQNSDVDEALN 259
            RD+V                                    WN++IGG  +N   +EA+ 
Sbjct: 328 HRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVE 387

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYC 317
           ++++M++ GF  ++ T++S+L AC+    L +G ++H +V ++    DL    ALL MY 
Sbjct: 388 MFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYA 447

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           KCG L  + +VF  M +KDV++W+TMI   A +G  +EAL LF+ M +SR++PN +T  G
Sbjct: 448 KCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTG 507

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           VL  CSH+  VE+G   F SM + + ++P   HYSC++D+  RAG+L EA K I  MP E
Sbjct: 508 VLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPME 567

Query: 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497
           P A  W ALL AC+V++N +LA  +AKK+  ++P +PG Y+ L NI   ++ W E ++VR
Sbjct: 568 PTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVR 627

Query: 498 KTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTN 557
             M+ RGITK PGCSW++V  ++H F V D S+ + DKI   L  L++K+   GY PDT+
Sbjct: 628 ILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTD 687

Query: 558 YVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKME 617
           YVLQD++ E+K +S+  HSEKLA+ FG+++L    TIR+ KNLRICGDCH   K  +K+ 
Sbjct: 688 YVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVV 747

Query: 618 NQTIVIRDPIRYHHFQDGNCSCGDYW 643
              IV+RD +R+HHF++GNCSC D W
Sbjct: 748 GVIIVVRDSLRFHHFKNGNCSCKDLW 773



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 187/386 (48%), Gaps = 48/386 (12%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
              A+ LFD +P+ +  + +T+ISA     ++++A+++   +   G++P+M  + A  +A
Sbjct: 114 FNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKA 173

Query: 185 C----DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           C    D+L + +++H    + G  SDVFV +ALI  Y K   +  A  VF+++  RD+V 
Sbjct: 174 CAVSGDALRV-KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVS 232

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           W S+   + +     + +++++ M  +G   +  T++S+L AC  L  L+ G ++H   +
Sbjct: 233 WTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAV 292

Query: 301 KYDHDLILN----NALLDMYCKCGSLEDAMSVFSRMIQKDVIS----------------- 339
           +  H +++N    +AL+ +Y KC S+ +A  VF  M  +DV+S                 
Sbjct: 293 R--HGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKG 350

Query: 340 ------------------WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
                             W+ +I G  +NG S+EA+++F  M+    KPN ITI  +L A
Sbjct: 351 FSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPA 410

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
           CS +  +  G      + + + +       + ++ +  + G L  + + + +M    D V
Sbjct: 411 CSFSENLRMGKEIHCYVFRHWKVG-DLTSTTALLYMYAKCGDLNLS-RNVFDMMRRKDVV 468

Query: 442 TWRALLGACKVHRNTDLAICAAKKIL 467
            W  ++ A  +H N   A+    K+L
Sbjct: 469 AWNTMIIANAMHGNGKEALFLFDKML 494



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 176/379 (46%), Gaps = 52/379 (13%)

Query: 50  CYQR-DLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY +   PR  M     M   GV+ + +T + ++  C     ++  K +H   +  G   
Sbjct: 239 CYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVV 298

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
             F+ + L++++ K   + EA+++FD MP R+VVSW  +++AY   K  +K   L + M 
Sbjct: 299 NLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMS 358

Query: 168 REGVR-----------------------------------PNMFTYSAVLRAC---DSLI 189
           R+GVR                                   PN  T S++L AC   ++L 
Sbjct: 359 RDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLR 418

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           + +++HC + +     D+   +AL+ +YAK G+L  +  VF+ M  +D+V WN++I   A
Sbjct: 419 MGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANA 478

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH----D 305
            + +  EAL L+ +M  +    +  T T VL  C+   L+E G Q+  + +  DH    D
Sbjct: 479 MHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIF-NSMGRDHLVEPD 537

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
               + ++D+Y + G L +A      M ++    +W  +++  A   Y    L    + K
Sbjct: 538 ANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLA--ACRVYKNVELAKISAKK 595

Query: 365 VSRIKP----NYITIVGVL 379
           +  I+P    NY+++  +L
Sbjct: 596 LFEIEPNNPGNYVSLFNIL 614



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 118/244 (48%), Gaps = 14/244 (5%)

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           LI +   +G+   A  +F+ +P  D    +++I     +   +EA+ +Y  ++  G   D
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 273 QSTLTSVLRAC--TGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSV 328
                +  +AC  +G AL     +VH    +     D+ + NAL+  Y KC  +E A  V
Sbjct: 164 MPVFLAAAKACAVSGDALRV--KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRV 221

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           F  ++ +DV+SW+++ S   + G+ ++ + +F  M  S +KPN +T+  +L AC+    +
Sbjct: 222 FDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDL 281

Query: 389 EDGWNHFKSMKKF---YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           + G    K +  F   +G+       S ++ L  +   ++EA  +   MP+  D V+W  
Sbjct: 282 KSG----KEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR-DVVSWNG 336

Query: 446 LLGA 449
           +L A
Sbjct: 337 VLTA 340


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 242/588 (41%), Positives = 359/588 (61%), Gaps = 25/588 (4%)

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF------------------ 122
           +K C        A  +H   +  G   + F  N LLN+ +K                   
Sbjct: 56  LKSCAGLGLCTLAASLHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGL 115

Query: 123 --SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSA 180
             +  E  + +FD+M ER+ VSW T+I    + K + +AL ++  M R+G  P+ FT S 
Sbjct: 116 ESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLST 175

Query: 181 VL---RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           VL     C  +     +H   IK GF++DVFV S+LID+YA   ++  +  VF+     D
Sbjct: 176 VLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCD 235

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
            V+WNS++ G+AQN  V+EAL +++RM +AG      T +S++ A   L+LL LG Q+H 
Sbjct: 236 AVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHA 295

Query: 298 HVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           ++++  ++ ++ ++++L+DMYCKCG+++ A  VF+ +   D++SW+ MI G A +G + E
Sbjct: 296 YLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTE 355

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           A  LFE M++  +KPN+IT + VL ACSHAG V++GW +F SM   YG  P  EH + + 
Sbjct: 356 AFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALA 415

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           D LGRAG L EA   I EM  +P +  W  LL AC+VH+NT LA   AKKI  L+P+  G
Sbjct: 416 DTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMG 475

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
           ++++LSN+Y+ S +W+E A++RK+MR +G+ KEP CSWIEV  ++H F   D SHP  D+
Sbjct: 476 SHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDR 535

Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
           I   L    ++++  GY P+   VLQD+E EQK + +  HSEKLAIVFG++S   G TIR
Sbjct: 536 IIDALNVYSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIR 595

Query: 596 IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + KNLR+C DCH   K  +K+  + IV+RD  R+H F+DGNCSCGD+W
Sbjct: 596 VMKNLRVCVDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 154/295 (52%), Gaps = 9/295 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+  +  M   G   D+ T + ++        ++   +VH + +  GF+ + F+ + L++
Sbjct: 154 ALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLID 213

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+   + ++ +  +FD   + + V W +M++ Y      ++AL +   ML+ GVRP   T
Sbjct: 214 MYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVT 273

Query: 178 YSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +S+++ A  +L +LR   QLH  +I+  F  ++F+ S+LID+Y K G +  A  VFN + 
Sbjct: 274 FSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQ 333

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
           + D+V W ++I G+A +    EA  L++RM+      +  T  +VL AC+   L++ G +
Sbjct: 334 SPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWK 393

Query: 295 VHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRMIQKDVIS-WSTMI 344
            + + +   +  + +     AL D   + G L++A +  S M  K   S WST++
Sbjct: 394 -YFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLL 447


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/627 (37%), Positives = 374/627 (59%), Gaps = 41/627 (6%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLS-GGFEPETFLVNILL 116
           A+     M   GV+ +S+T A  +  C     +   + +H + +     + +  + N L+
Sbjct: 346 ALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLV 405

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           + + K   +E A+  F  + + ++VSW  M++ Y     +++A+ELL  M  +G+ P++ 
Sbjct: 406 DYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDII 465

Query: 177 TY-----------------------------------SAVLRACD---SLIILRQLHCGI 198
           T+                                   S  L AC    +L + +++H  +
Sbjct: 466 TWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYV 525

Query: 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEAL 258
           ++   E    V SALI +Y+    L  A  VF+E+ TRD+VVWNSII   AQ+     AL
Sbjct: 526 LRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNAL 585

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNALLDMY 316
           +L + M  +    +  T+ S L AC+ LA L  G ++H  +++   D    + N+L+DMY
Sbjct: 586 DLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMY 645

Query: 317 CKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIV 376
            +CGS++ +  +F  M Q+D++SW+ MIS    +G+  +A+ LF+  +   +KPN+IT  
Sbjct: 646 GRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFT 705

Query: 377 GVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY 436
            +L ACSH+G +E+GW +FK MK  Y +DP  E Y+CM+DLL RAG+  E ++ I +MP+
Sbjct: 706 NLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPF 765

Query: 437 EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEV 496
           EP+A  W +LLGAC++H N DLA  AA+ +  L+PQ  G Y+L++NIY+ + +W++ A++
Sbjct: 766 EPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKI 825

Query: 497 RKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDT 556
           R  M+ RG+TK PGCSWIEV +++H+F V D+SHP +++I+  ++ L   +  +GY PDT
Sbjct: 826 RCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDT 885

Query: 557 NYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKM 616
           N+VLQD++ ++KE S+  HSEK+A+ FGL+S T G  +RI KNLR+CGDCH+  K  +K+
Sbjct: 886 NFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKV 945

Query: 617 ENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           E + I++RD  R+HHF DG CSCGDYW
Sbjct: 946 EKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 140/502 (27%), Positives = 241/502 (48%), Gaps = 68/502 (13%)

Query: 2   ILKAVSKLKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKA 61
           + KA S+LK  +       + L+I     SC        S+LD F + C + D+ R    
Sbjct: 196 VFKACSELKNYRVGKDVYDYMLSIGFEGNSCV-----KGSILDMFIK-CGRMDIARRFFE 249

Query: 62  MHAMQCHGVRADSVTYAELIKCCLARHAVEEA-KLVHNHVLSGGFEPETFLVNILLNMHV 120
               +      D   +  ++    ++   ++A K + +  LSG  +P+    N +++ + 
Sbjct: 250 EIEFK------DVFMWNIMVSGYTSKGEFKKALKCISDMKLSG-VKPDQVTWNAIISGYA 302

Query: 121 KFSLLEEAQVLFDQMP-----ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
           +    EEA   F +M      + NVVSWT +I+       + +AL +   M+ EGV+PN 
Sbjct: 303 QSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNS 362

Query: 176 FTYSAVLRACDSLIIL---RQLHCGIIKV-GFESDVFVRSALIDIYA----------KLG 221
            T ++ + AC +L +L   R++H   IKV   +SD+ V ++L+D YA          K G
Sbjct: 363 ITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFG 422

Query: 222 ELRNAECV---------------------FNEMPTR----DLVVWNSIIGGFAQNSDVDE 256
            ++  + V                      +EM  +    D++ WN ++ GF Q  D   
Sbjct: 423 MIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKA 482

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNALLD 314
           AL  ++RM   G   + +T++  L AC  +  L+LG ++H +VL+   +L   + +AL+ 
Sbjct: 483 ALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALIS 542

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           MY  C SLE A SVFS +  +DV+ W+++IS  AQ+G S  AL L   M +S ++ N +T
Sbjct: 543 MYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVT 602

Query: 375 IVGVLFACSHAGFVEDGWNHFKSMKKFY---GIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
           +V  L ACS    +  G    K + +F    G+D      + +ID+ GR G +Q++ ++ 
Sbjct: 603 MVSALPACSKLAALRQG----KEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIF 658

Query: 432 HEMPYEPDAVTWRALLGACKVH 453
             MP + D V+W  ++    +H
Sbjct: 659 DLMP-QRDLVSWNVMISVYGMH 679



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 196/426 (46%), Gaps = 78/426 (18%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           YA +++ C   + +     VH  ++  G +   FL + LL ++ +   +E+A+ +FD+M 
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 151

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQ 193
           ERNV SWT ++  YC     ++ ++L   M+ EGVRP+ F +  V +AC  L    + + 
Sbjct: 152 ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 211

Query: 194 LHCGIIKVGFES---------DVFVRSALIDI----------------------YAKLGE 222
           ++  ++ +GFE          D+F++   +DI                      Y   GE
Sbjct: 212 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 271

Query: 223 LRNAECVFNEMPTR----DLVVWNSIIGGFAQNSDVDEA--------------------- 257
            + A    ++M       D V WN+II G+AQ+   +EA                     
Sbjct: 272 FKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWT 331

Query: 258 ---------------LNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK- 301
                          L+++++M   G   +  T+ S + ACT L+LL  G ++H + +K 
Sbjct: 332 ALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKV 391

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
              D DL++ N+L+D Y KC S+E A   F  + Q D++SW+ M++G A  G  +EA++L
Sbjct: 392 EELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIEL 451

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
              MK   I+P+ IT  G++   +  G  +     F+ M    G+DP     S  +   G
Sbjct: 452 LSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSM-GMDPNTTTISGALAACG 510

Query: 420 RAGKLQ 425
           +   L+
Sbjct: 511 QVRNLK 516



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 158/314 (50%), Gaps = 12/314 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           + L+  FT++   +      + MH+M   G+  ++ T +  +  C     ++  K +H +
Sbjct: 468 NGLVTGFTQYGDGKAALEFFQRMHSM---GMDPNTTTISGALAACGQVRNLKLGKEIHGY 524

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           VL    E  T + + L++M+     LE A  +F ++  R+VV W ++ISA   +  +  A
Sbjct: 525 VLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNA 584

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDI 216
           L+LL  M    V  N  T  + L AC  L  LRQ   +H  II+ G ++  F+ ++LID+
Sbjct: 585 LDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDM 644

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           Y + G ++ +  +F+ MP RDLV WN +I  +  +    +A+NL+++ +  G   +  T 
Sbjct: 645 YGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITF 704

Query: 277 TSVLRACTGLALLELGTQVHVHVLK--YDHDLILNN--ALLDMYCKCGSLEDAMSVFSRM 332
           T++L AC+   L+E G + +  ++K  Y  D  +     ++D+  + G   + +    +M
Sbjct: 705 TNLLSACSHSGLIEEGWK-YFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKM 763

Query: 333 -IQKDVISWSTMIS 345
             + +   W +++ 
Sbjct: 764 PFEPNAAVWGSLLG 777



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 141/281 (50%), Gaps = 8/281 (2%)

Query: 178 YSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           Y+++L+ C  L  LR   Q+H  ++  G +   F+ S L+++Y + G + +A  +F++M 
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 151

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            R++  W +I+  +    D +E + L+  M   G   D      V +AC+ L    +G  
Sbjct: 152 ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 211

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           V+ ++L   ++ +  +  ++LDM+ KCG ++ A   F  +  KDV  W+ M+SG    G 
Sbjct: 212 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 271

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            ++ALK    MK+S +KP+ +T   ++   + +G  E+   +F  M       P    ++
Sbjct: 272 FKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWT 331

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYE---PDAVTWRALLGAC 450
            +I    + G   EA+ +  +M  E   P+++T  + + AC
Sbjct: 332 ALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSAC 372


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/572 (40%), Positives = 356/572 (62%), Gaps = 6/572 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y   I  C     +E+A+ VH H+ S  F  + FL N L++++ K   + EA+ +FD+M 
Sbjct: 54  YHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMR 113

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQ 193
            +++VSWT++I+ Y    M ++A+ LL  ML+   +PN FT++++L+A  +     I RQ
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQ 173

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H   +K  +  DV+V SAL+D+YA+ G +  A  VF+++ +++ V WN++I GFA+  D
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNA 311
            + AL  +  M R GF A   T +SV  +   L  LE G  VH H++K    +     N 
Sbjct: 234 GETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNT 293

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           LLDMY K GS+ DA  VF R+  KD+++W+TM++  AQ G  +EA+  FE M+ S I  N
Sbjct: 294 LLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLN 353

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            +T + +L ACSH G V++G  +F+ MK+ Y ++P  +H+  ++ LLGRAG L  A+  I
Sbjct: 354 QVTFLCILTACSHGGLVKEGKRYFEMMKE-YDLEPEIDHFVTVVALLGRAGLLNFALVFI 412

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
            +MP EP A  W ALL AC++H+N  +   AA  +  LDP D G  +LL NIYA++ +WD
Sbjct: 413 FKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWD 472

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
             A VR+ M+  G+ KEP CSW+E+   +H F   D +HP+ ++I K    + +K+   G
Sbjct: 473 AAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQISKKIRKEG 532

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           Y PD +YVL  ++ +++E ++QYHSEKLA+ F L+ +  G TIRI KN+RICGDCH+  K
Sbjct: 533 YVPDMDYVLLRVDDQEREANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFK 592

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             +K+  + IV+RD  R+HHF +G+CSC DYW
Sbjct: 593 YISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 150/302 (49%), Gaps = 7/302 (2%)

Query: 52  QRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Q D+P  A+  +  M     + +  T+A L+K   A       + +H   +   +  + +
Sbjct: 129 QNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVY 188

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           + + LL+M+ +  +++ A  +FD++  +N VSW  +IS +      + AL     MLR G
Sbjct: 189 VGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNG 248

Query: 171 VRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
                FTYS+V  +   L  L Q   +H  +IK   +   F  + L+D+YAK G + +A 
Sbjct: 249 FEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDAR 308

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            VF+ +  +DLV WN+++  FAQ     EA++ ++ M+++G   +Q T   +L AC+   
Sbjct: 309 KVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGG 368

Query: 288 LLELGTQVHVHVLKYDHDLILNN--ALLDMYCKCGSLEDAMS-VFSRMIQKDVISWSTMI 344
           L++ G +    + +YD +  +++   ++ +  + G L  A+  +F   I+     W  ++
Sbjct: 369 LVKEGKRYFEMMKEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALL 428

Query: 345 SG 346
           + 
Sbjct: 429 AA 430



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 112/257 (43%), Gaps = 39/257 (15%)

Query: 31  SCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAV 90
           S N ++ N+  L+  F R   + D   A+     M  +G  A   TY+ +        A+
Sbjct: 215 SKNGVSWNA--LISGFAR---KGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGAL 269

Query: 91  EEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
           E+ K VH H++    +   F  N LL+M+ K   + +A+ +FD++ ++++V+W TM++A+
Sbjct: 270 EQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAF 329

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGF------- 203
               +  +A+     M + G+  N  T+  +L AC         H G++K G        
Sbjct: 330 AQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACS--------HGGLVKEGKRYFEMMK 381

Query: 204 ------ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL-VVWNSIIGGFAQNSDVDE 256
                 E D FV   ++ +  + G L  A     +MP      VW +++           
Sbjct: 382 EYDLEPEIDHFV--TVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLA---------- 429

Query: 257 ALNLYKRMKRAGFAADQ 273
           A  ++K  K   FAAD 
Sbjct: 430 ACRMHKNAKVGQFAADH 446


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/601 (41%), Positives = 369/601 (61%), Gaps = 20/601 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV---HNHVLSGGFEPETFLVNI 114
           A+     M+  G+  D  T + +I  C      ++  L+   H+  +S GF+    + N 
Sbjct: 124 ALGLFSGMREMGLDMDGFTLSAVITAC-----CDDVGLIGQLHSVAVSSGFDSYVSVNNA 178

Query: 115 LLNMHVKFSLLEEAQVLFDQMPE-RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
           LL  + K   L++A+ +F  M   R+ VSW +MI AY   +   KAL L   M+R G+  
Sbjct: 179 LLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNV 238

Query: 174 NMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGE-LRNAECV 229
           +MFT ++VL A   L  L    Q H  +IK GF  +  V S LID+Y+K G  + +   V
Sbjct: 239 DMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKV 298

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSD-VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           F E+   DLV+WN+++ G++QN + +++AL  +++M+  G+  +  +   V+ AC+ L+ 
Sbjct: 299 FEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSS 358

Query: 289 LELGTQVHVHVLKYD---HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
              G Q+H   LK D   + + ++NAL+ MY KCG+L+DA  +F RM + + +S ++MI+
Sbjct: 359 PSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIA 418

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           G AQ+G   E+L LF+ M   +I P  IT + VL AC+H G VE+GWN+F  MK+ + I+
Sbjct: 419 GYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIE 478

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
           P  EHYSCMIDLLGRAGKL EA  LI  MP+ P ++ W +LLGAC+ H N +LA+ AA +
Sbjct: 479 PEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQ 538

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
           +L L+P +   Y++LSN+YA++ +W+EVA VRK MR RG+ K+PGCSWIEV K+IH F  
Sbjct: 539 VLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVA 598

Query: 526 ADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVL---QDLEGEQKEDSIQYHSEKLAIV 582
            DSSHP I +I + L+ +  K+   GY PD  + L       G +KE  + +HSEKLA+ 
Sbjct: 599 EDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVA 658

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           FGL+S   G+ + + KNLRICGDCH   K  + +  + I +RD  R+H F++G CSCGDY
Sbjct: 659 FGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDY 718

Query: 643 W 643
           W
Sbjct: 719 W 719



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 187/355 (52%), Gaps = 9/355 (2%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           +P  F  N ++  + K S    A  LFDQ+PE ++VS+ T+ISAY D      AL L   
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 166 MLREGVRPNMFTYSAVLRA-CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           M   G+  + FT SAV+ A CD + ++ QLH   +  GF+S V V +AL+  Y K G+L 
Sbjct: 131 MREMGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190

Query: 225 NAECVFNEM-PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           +A+ VF  M   RD V WNS+I  + Q+ +  +AL L++ M R G   D  TL SVL A 
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAF 250

Query: 284 TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKC-GSLEDAMSVFSRMIQKDVISW 340
           T L  L  G Q H  ++K  +  +  + + L+D+Y KC G + D   VF  + + D++ W
Sbjct: 251 TCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLW 310

Query: 341 STMISGLAQN-GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           +TM+SG +QN  + ++AL+ F  M+    +PN  + V V+ ACS+      G     S+ 
Sbjct: 311 NTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQG-KQIHSLA 369

Query: 400 KFYGIDPGREHY-SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
               I   R    + +I +  + G LQ+A +L   M  E + V+  +++     H
Sbjct: 370 LKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNSMIAGYAQH 423


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 248/645 (38%), Positives = 374/645 (57%), Gaps = 45/645 (6%)

Query: 40  SSLLDDFTRFCYQRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHN 98
           S+L+  FT     R LP  A++   +++  G++  +  +  + K C A       K VH+
Sbjct: 101 STLISAFT----TRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRVKEVHD 156

Query: 99  HVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
             +  G   + FL N L++ + K   +E A+ +FD +  ++VVSWT+M S Y +  +   
Sbjct: 157 DAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRL 216

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALID 215
            L +   M   GV+PN  T S++L AC  L  L   R +H   ++ G   +VFV SAL+ 
Sbjct: 217 GLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVS 276

Query: 216 IYAKLGELRNAECVFNEMPTRDLV-----------------------------------V 240
           +YA+   ++ A  VF+ MP RD+V                                    
Sbjct: 277 LYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEAT 336

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           WN++IGG  +N   ++A+ + ++M+  GF  +Q T++S L AC+ L  L +G +VH +V 
Sbjct: 337 WNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVF 396

Query: 301 KY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           ++    DL    AL+ MY KCG L  + +VF  + +KDV++W+TMI   A +G  +E L 
Sbjct: 397 RHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLL 456

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
           LFESM  S IKPN +T  GVL  CSH+  VE+G   F SM + + ++P   HY+CM+D+ 
Sbjct: 457 LFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVF 516

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
            RAG+L EA + I  MP EP A  W ALLGAC+V++N +LA  +A K+  ++P +PG Y+
Sbjct: 517 SRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFEIEPNNPGNYV 576

Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
            L NI   ++ W E +E R  M+ RGITK PGCSW++V  ++H F V D ++ + DKI  
Sbjct: 577 SLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGDKNNMESDKIYN 636

Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRK 598
            L  L +K+   GY PDT+YVLQD++ E+K +S+  HSEKLA+ FG+++L    +IR+ K
Sbjct: 637 FLDELGEKMKSAGYKPDTDYVLQDIDQEEKAESLCSHSEKLAVAFGILNLNGQSSIRVFK 696

Query: 599 NLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           NLRICGDCH   K  +K+   TI++RD +R+HHF++GNCSC D W
Sbjct: 697 NLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHFRNGNCSCQDLW 741



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 144/299 (48%), Gaps = 6/299 (2%)

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           LL   +       AQ LFD +P+ +  + +T+ISA+    + ++A+ L   +   G++P+
Sbjct: 72  LLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPH 131

Query: 175 MFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
              +  V +AC +      ++++H   I+ G  SD F+ +ALI  Y K   +  A  VF+
Sbjct: 132 NSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFD 191

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           ++  +D+V W S+   +         L ++  M   G   +  TL+S+L AC+ L  L+ 
Sbjct: 192 DLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKS 251

Query: 292 GTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G  +H   +++    ++ + +AL+ +Y +C S++ A  VF  M  +DV+SW+ +++    
Sbjct: 252 GRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFT 311

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           N    + L LF  M    ++ +  T   V+  C   G  E      + M+   G  P +
Sbjct: 312 NREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNL-GFKPNQ 369


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/595 (39%), Positives = 363/595 (61%), Gaps = 5/595 (0%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           DL ++      M   GVR +  TY  L++ C     +   + +H   +  GFE + ++  
Sbjct: 325 DLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSG 384

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
           +L++M+ K+  L++A+ + + +  ++VVSWT+MI+ Y   +   +ALE    M   G+ P
Sbjct: 385 VLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWP 444

Query: 174 NMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +    ++ + AC  +  +RQ   +H  +   G+ +DV + +AL+++YA+ G  + A  +F
Sbjct: 445 DNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLF 504

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
             +  +D + WN ++ GFAQ+   +EAL ++ +M +AG   +  T  S + A   LA ++
Sbjct: 505 EAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIK 564

Query: 291 LGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G Q+H  V+K     +  + NAL+ +Y KCGS+EDA   F  M +++ +SW+T+I+  +
Sbjct: 565 QGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCS 624

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           Q+G+  EAL LF+ MK   +KPN +T +GVL ACSH G VE+G  +FKSM   +GI P  
Sbjct: 625 QHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRP 684

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           +HY+C++D+LGRAG+L  A K + EMP   +A+ WR LL AC+VH+N ++   AAK +L 
Sbjct: 685 DHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLE 744

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           L+P D  +Y+LLSN YA + KW     VRK M+ RG+ KEPG SWIEV   +HAF V D 
Sbjct: 745 LEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDR 804

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
            HP   +I K+L  L  +L  +GY     ++  + E EQK+ +   HSEKLA+ FGLMSL
Sbjct: 805 LHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSL 864

Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
                +R+ KNLR+C DCHT+ K T+++  + IV+RD  R+HHF +GNCSCGD+W
Sbjct: 865 PPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/401 (32%), Positives = 213/401 (53%), Gaps = 7/401 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+  G   D VT A L+  C +   + + K +H+++L  G  P+  +   LL+
Sbjct: 228 ALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLD 287

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++VK  ++ EA  +F      NVV W  M+ AY       K+ +L   M+  GVRPN FT
Sbjct: 288 LYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFT 347

Query: 178 YSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           Y  +LR C     + +  Q+H   IK GFESD++V   LID+Y+K G L  A  +   + 
Sbjct: 348 YPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLE 407

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            +D+V W S+I G+ Q+    EAL  +K M+  G   D   L S + AC G+  +  G Q
Sbjct: 408 AKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQ 467

Query: 295 VH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  V+V  Y  D+ + NAL+++Y +CG  ++A S+F  +  KD I+W+ M+SG AQ+G 
Sbjct: 468 IHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGL 527

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            +EAL++F  M  + +K N  T V  + A ++   ++ G     ++ K  G     E  +
Sbjct: 528 YEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIK-TGCTSETEVAN 586

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            +I L G+ G +++A     EM  E + V+W  ++ +C  H
Sbjct: 587 ALISLYGKCGSIEDAKMQFFEMS-ERNHVSWNTIITSCSQH 626



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 205/395 (51%), Gaps = 7/395 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+   H M C GV       + ++  C      E+ +LVH  V   G   ET + N L+ 
Sbjct: 127 AVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIA 186

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++++F  L  A+ +F +MP  + V++ T+IS +      + ALE+   M   G  P+  T
Sbjct: 187 LYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVT 246

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            +++L AC S+  L   +QLH  ++K G   D  +  +L+D+Y K G +  A  +F    
Sbjct: 247 IASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGD 306

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             ++V+WN ++  + Q SD+ ++ +L+ +M  AG   ++ T   +LR CT    + LG Q
Sbjct: 307 RTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQ 366

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H+  +K  ++ D+ ++  L+DMY K G L+ A  +   +  KDV+SW++MI+G  Q+ +
Sbjct: 367 IHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEF 426

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            +EAL+ F+ M++  I P+ I +   + AC+    +  G     S     G       ++
Sbjct: 427 CKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQG-QQIHSRVYVSGYSADVSIWN 485

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
            +++L  R G+ +EA  L   + ++ D +TW  ++
Sbjct: 486 ALVNLYARCGRSKEAFSLFEAIEHK-DKITWNGMV 519



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 126/428 (29%), Positives = 219/428 (51%), Gaps = 18/428 (4%)

Query: 37  RNSSSLLDDFTRFCYQRDLPR--AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAK 94
           R ++SL    T F    D  +  ++ A    QC G+   SV +A  ++ C  R +V+   
Sbjct: 4   RAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGL--GSVDFACALREC--RGSVKHWP 59

Query: 95  LV---HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
           LV   H   ++ G   +    N+L++++ K  L++ A+ +F+Q+  R+ VSW  M+S Y 
Sbjct: 60  LVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYA 119

Query: 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVF 208
              + ++A+ L   M   GV P  +  S+VL AC    +  Q   +H  + K G  S+  
Sbjct: 120 RNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETV 179

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           V +ALI +Y + G L  AE VF+EMP  D V +N++I   AQ  + + AL +++ M+ +G
Sbjct: 180 VGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSG 239

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAM 326
           +  D  T+ S+L AC  +  L  G Q+H ++LK     D I+  +LLD+Y KCG + +A+
Sbjct: 240 WTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEAL 299

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            +F    + +V+ W+ M+    Q     ++  LF  M  + ++PN  T   +L  C++AG
Sbjct: 300 EIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAG 359

Query: 387 FVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
            +  G   H  S+K   G +        +ID+  + G L +A +++ E+    D V+W +
Sbjct: 360 EINLGEQIHLLSIKT--GFESDMYVSGVLIDMYSKYGWLDKARRIL-EVLEAKDVVSWTS 416

Query: 446 LLGACKVH 453
           ++     H
Sbjct: 417 MIAGYVQH 424



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 158/321 (49%), Gaps = 8/321 (2%)

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI----I 190
           M  R   S    ++ +   +  +K L L    +R+        ++  LR C   +    +
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRGSVKHWPL 60

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           +  +H   I  G   D    + LID+YAK G ++ A  VF ++  RD V W +++ G+A+
Sbjct: 61  VPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYAR 120

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLIL 308
           N   +EA+ LY +M  +G       L+SVL ACT  AL E G  VH  V K     + ++
Sbjct: 121 NGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVV 180

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            NAL+ +Y + GSL  A  VFS M   D ++++T+IS  AQ G  + AL++FE M++S  
Sbjct: 181 GNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGW 240

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
            P+ +TI  +L AC+  G +  G     S     G+ P       ++DL  + G + EA+
Sbjct: 241 TPDCVTIASLLAACASIGDLNKG-KQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEAL 299

Query: 429 KLIHEMPYEPDAVTWRALLGA 449
           + I +     + V W  +L A
Sbjct: 300 E-IFKSGDRTNVVLWNLMLVA 319


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/595 (38%), Positives = 363/595 (61%), Gaps = 5/595 (0%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           DL ++    + M   GVR +  TY  +++ C     +   + +H+  +  GF+ + ++  
Sbjct: 325 DLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSG 384

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
           +L++M+ K+  L++AQ + D + E++VVSWT+MI+ Y   +   +ALE    M   G+ P
Sbjct: 385 VLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWP 444

Query: 174 NMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +    ++ + AC  +  + Q   +H  +   G+ +DV + + L+ +YA+ G  + A   F
Sbjct: 445 DNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSF 504

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
             +  ++ + WN +I GFAQ+   +EAL ++ +M +AG   +  T  S + A   LA ++
Sbjct: 505 EAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIK 564

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G Q+H  V+K  Y  +  ++NAL+ +Y KCGS+EDA   F  M +++ +SW+T+I+  +
Sbjct: 565 QGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCS 624

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           Q+G   EAL LF+ MK   +KP+ +T VGVL ACSH G VE+G  +FKSM   +GI P  
Sbjct: 625 QHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRP 684

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           +HY+C++D+LGRAG+L  A + + EMP   D++ WR LL ACKVH+N ++   AAK +L 
Sbjct: 685 DHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLE 744

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           L+P D  +Y+LLSN YA + KW    ++RK M+ RG+ KEPG SWIEV   +HAF V D 
Sbjct: 745 LEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDR 804

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
            HP  D+I   L HL  +L  +GY  +  ++  + E E K+ +   HSEKLA+ FGLMSL
Sbjct: 805 LHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEKEKEGKDPTAFVHSEKLAVAFGLMSL 864

Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
                +R+ KNLR+C DCHT+ K T+ +  + IV+RD  R+HHF +G+CSCGDYW
Sbjct: 865 PSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 140/428 (32%), Positives = 227/428 (53%), Gaps = 14/428 (3%)

Query: 32  CNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVE 91
           C+++T N+  L+    + C   D  RA+     MQ  G+  DSVT A L+  C A   + 
Sbjct: 207 CDSVTFNT--LISGHAQ-CGHGD--RALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLR 261

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
           + K +H+++L  G   +  +   LL+++VK   +EEA  +FD     NVV W  M+ AY 
Sbjct: 262 KGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYG 321

Query: 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVF 208
                 K+ ++   ML  GVRPN FTY  +LR C     + +  Q+H   IK GF+SD++
Sbjct: 322 QIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMY 381

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           V   LID+Y+K G L  A+ + + +  +D+V W S+I G+ Q+    EAL  +K M+  G
Sbjct: 382 VSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACG 441

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAM 326
              D   L S + AC G+  +  G+Q+H  V+V  Y  D+ + N L+ +Y +CG  ++A 
Sbjct: 442 IWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAF 501

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
           S F  +  K+ I+W+ +ISG AQ+G  +EALK+F  M  +  K N  T V  + A ++  
Sbjct: 502 SSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLA 561

Query: 387 FVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
            ++ G   H + +K  Y  +   E  + +I L G+ G +++A     EM  + + V+W  
Sbjct: 562 DIKQGKQIHARVIKTGYTSET--EISNALISLYGKCGSIEDAKMDFFEMT-KRNEVSWNT 618

Query: 446 LLGACKVH 453
           ++  C  H
Sbjct: 619 IITCCSQH 626



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 200/396 (50%), Gaps = 9/396 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M   GV       + ++  C      +  +L+H  V   GF  ETF+ N L++
Sbjct: 127 AVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALIS 186

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++++      A  +F  M   + V++ T+IS +      D+AL +   M   G+ P+  T
Sbjct: 187 LYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVT 246

Query: 178 YSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            +++L AC ++  LR   QLH  ++K G   D  +  +L+D+Y K G++  A  +F+   
Sbjct: 247 IASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGD 306

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             ++V+WN ++  + Q  D+ ++ +++ RM  AG   ++ T   +LR CT    + LG Q
Sbjct: 307 RTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQ 366

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H   +K  +  D+ ++  L+DMY K G L+ A  +   + +KDV+SW++MI+G  Q+ +
Sbjct: 367 IHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEF 426

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHY 411
            +EAL+ F+ M+   I P+ I +   + AC+    V  G   H +     Y  D     +
Sbjct: 427 CKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADV--SIW 484

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           + ++ L  R G  +EA      + ++ + +TW  L+
Sbjct: 485 NGLVYLYARCGISKEAFSSFEAIEHK-EGITWNGLI 519



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 185/363 (50%), Gaps = 7/363 (1%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H   +  G      + N+L++++ K   +  A+ +F+++  R+ VSW  ++S Y    +
Sbjct: 64  IHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGL 123

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSA 212
            ++A+ L   M R GV P  +  S++L AC    +    R +H  + K GF S+ FV +A
Sbjct: 124 GEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNA 183

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           LI +Y +    R A+ VF +M   D V +N++I G AQ    D AL ++  M+ +G + D
Sbjct: 184 LISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPD 243

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFS 330
             T+ S+L AC+ +  L  G Q+H ++LK     D I+  +LLD+Y K G +E+A+ +F 
Sbjct: 244 SVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFD 303

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
              + +V+ W+ M+    Q     ++  +F  M  + ++PN  T   +L  C+H G +  
Sbjct: 304 SGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGL 363

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G     S+    G          +ID+  + G L +A +++ +M  E D V+W +++   
Sbjct: 364 G-EQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRIL-DMIEEKDVVSWTSMIAGY 421

Query: 451 KVH 453
             H
Sbjct: 422 VQH 424



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 165/322 (51%), Gaps = 10/322 (3%)

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS----LII 190
           M  R   S+   ++ +      +K L L     R+ +      ++  LRAC        +
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPL 60

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           + ++H   I  G      + + LID+YAK G +R A  VF E+  RD V W +++ G+AQ
Sbjct: 61  VPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQ 120

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
           N   +EA+ LY+ M R+G       L+S+L ACT   L +LG  +HV V K  +  +  +
Sbjct: 121 NGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFV 180

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            NAL+ +Y +C S   A  VF  M+  D ++++T+ISG AQ G+   AL +F+ M++S +
Sbjct: 181 GNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGL 240

Query: 369 KPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
            P+ +TI  +L ACS  G +  G   H   +K    +D   E    ++DL  ++G ++EA
Sbjct: 241 SPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIME--GSLLDLYVKSGDIEEA 298

Query: 428 VKLIHEMPYEPDAVTWRALLGA 449
           ++ I +     + V W  +L A
Sbjct: 299 LQ-IFDSGDRTNVVLWNLMLVA 319


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/607 (38%), Positives = 369/607 (60%), Gaps = 36/607 (5%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           + +T++ L+     R  V+  + +H HV+  GF    F+ + L++M+ K  ++  A+ +F
Sbjct: 142 NRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVF 201

Query: 133 DQMPERNVV-------------------------------SWTTMISAYCDAKMNDKALE 161
           D++PE+NVV                               SWT+MI+ +    ++  A++
Sbjct: 202 DELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAID 261

Query: 162 LLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYA 218
           +   M  E ++ + +T+ +VL AC  ++ L   +Q+H  II+  ++ ++FV SAL+D+Y 
Sbjct: 262 IFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYC 321

Query: 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278
           K   +++AE VF +M  +++V W +++ G+ QN   +EA+  +  M++ G   D  TL S
Sbjct: 322 KCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGS 381

Query: 279 VLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD 336
           V+ +C  LA LE G Q H   L       + ++NAL+ +Y KCGS+ED+  +F+ +  KD
Sbjct: 382 VISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKD 441

Query: 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
            ++W+ ++SG AQ G + E + LFESM    +KP+ +T +GVL ACS AG VE G   F+
Sbjct: 442 EVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFE 501

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
           SM   +GI P ++HY+CMIDL  RAG+++EA   I++MP+ PDA++W  LL +C+ + N 
Sbjct: 502 SMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNM 561

Query: 457 DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEV 516
           D+   AA+ ++ LDP +  +Y+LLS++YA   KW+EVA +RK MR +G+ KEPGCSWI+ 
Sbjct: 562 DIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKY 621

Query: 517 NKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHS 576
             Q+H F+  D S+P  D+I   L+ L  K++  GY PD N VL D+   +K   + +HS
Sbjct: 622 KNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHS 681

Query: 577 EKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGN 636
           EKLAI FGL+ +  G  IR+ KNLR+C DCH   K  +K+ N+ I++RD  R+H F+DG 
Sbjct: 682 EKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTARFHLFKDGT 741

Query: 637 CSCGDYW 643
           CSCGD+W
Sbjct: 742 CSCGDFW 748



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 135/444 (30%), Positives = 225/444 (50%), Gaps = 75/444 (16%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN----------------------- 113
           Y  L+K C   H   +AK +H+H++     PETFL+N                       
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMP 71

Query: 114 --------ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
                    +L+ + K   + E + LFD MP R+ VSW ++IS Y    +  ++++    
Sbjct: 72  HPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNL 131

Query: 166 MLRE--GVRPNMFTYSAVL-----RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA 218
           ML+       N  T+S +L     R C  L   RQ+H  ++K GF S VFV S L+D+Y+
Sbjct: 132 MLKNDGSFNLNRITFSTLLILASKRGCVKL--GRQIHGHVVKFGFMSYVFVGSPLVDMYS 189

Query: 219 KLGELRNAECVFNEMP-------------------------------TRDLVVWNSIIGG 247
           K+G +  A  VF+E+P                                RD + W S+I G
Sbjct: 190 KMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITG 249

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--D 305
           F QN    +A+++++ MK      DQ T  SVL AC G+  L+ G QVH ++++ D+  +
Sbjct: 250 FTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDN 309

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           + + +AL+DMYCKC +++ A +VF +M  K+V+SW+ M+ G  QNGYS+EA+K F  M+ 
Sbjct: 310 IFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQK 369

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
             I+P+  T+  V+ +C++   +E+G   F +     G+       + ++ L G+ G ++
Sbjct: 370 YGIEPDDFTLGSVISSCANLASLEEG-AQFHARALTSGLISFITVSNALVTLYGKCGSIE 428

Query: 426 EAVKLIHEMPYEPDAVTWRALLGA 449
           ++ +L +E+ ++ D VTW AL+  
Sbjct: 429 DSHRLFNEISFK-DEVTWTALVSG 451



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 168/314 (53%), Gaps = 12/314 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           +S++  FT+    RD   A+     M+   ++ D  T+  ++  C    A++E K VH +
Sbjct: 244 TSMITGFTQNGLDRD---AIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAY 300

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           ++   ++   F+ + L++M+ K   ++ A+ +F +M  +NVVSWT M+  Y     +++A
Sbjct: 301 IIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEA 360

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDI 216
           ++    M + G+ P+ FT  +V+ +C +L  L    Q H   +  G  S + V +AL+ +
Sbjct: 361 VKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTL 420

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           Y K G + ++  +FNE+  +D V W +++ G+AQ    +E + L++ M   G   D+ T 
Sbjct: 421 YGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTF 480

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLIL----NNALLDMYCKCGSLEDAMSVFSRM 332
             VL AC+   L+E G Q+   ++  +H ++        ++D++ + G +E+A +  ++M
Sbjct: 481 IGVLSACSRAGLVEKGNQIFESMIN-EHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKM 539

Query: 333 -IQKDVISWSTMIS 345
               D ISW+T++S
Sbjct: 540 PFSPDAISWATLLS 553


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/598 (41%), Positives = 367/598 (61%), Gaps = 14/598 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M+  G+  D  T + +I  C     V     +H+  +S GF+    + N LL 
Sbjct: 124 ALGLFSGMREMGLDMDXFTLSAVITACC--DDVGLIGQLHSVAVSSGFDSYVSVNNALLT 181

Query: 118 MHVKFSLLEEAQVLFDQMPE-RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
            + K   L++A+ +F  M   R+ VSW +MI AY   +   KAL L   M+R G+  +MF
Sbjct: 182 YYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMF 241

Query: 177 TYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGE-LRNAECVFNE 232
           T ++VL A   L  L    Q H  +IK GF  +  V S LID+Y+K G  + +   VF E
Sbjct: 242 TLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEE 301

Query: 233 MPTRDLVVWNSIIGGFAQNSD-VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           +   DLV+WN+++ G++QN + +++AL  +++M+  G+  +  +   V+ AC+ L+    
Sbjct: 302 ITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQ 361

Query: 292 GTQVHVHVLKYD---HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
           G Q+H   LK D   + + ++NAL+ MY KCG+L+DA  +F RM + + +S ++MI+G A
Sbjct: 362 GKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYA 421

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           Q+G   E+L LF+ M   +I P  IT + VL AC+H G VE+GWN+F  MK+ + I+P  
Sbjct: 422 QHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEA 481

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           EHYSCMIDLLGRAGKL EA  LI  MP+ P ++ W +LLGAC+ H N +LA+ AA ++L 
Sbjct: 482 EHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQ 541

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           L+P +   Y++LSN+YA++ +W+EVA VRK MR RG+ K+PGCSWIEV K+IH F   DS
Sbjct: 542 LEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDS 601

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVL---QDLEGEQKEDSIQYHSEKLAIVFGL 585
           SHP I +I + L+ +  K+   GY PD  + L       G +KE  + +HSEKLA+ FGL
Sbjct: 602 SHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGL 661

Query: 586 MSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +S   G+ + + KNLRICGDCH   K  + +  + I +RD  R+H F++G CSCGDYW
Sbjct: 662 ISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 187/355 (52%), Gaps = 9/355 (2%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           +P  F  N ++  + K S    A  LFDQ+PE ++VS+ T+ISAY D      AL L   
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 166 MLREGVRPNMFTYSAVLRA-CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           M   G+  + FT SAV+ A CD + ++ QLH   +  GF+S V V +AL+  Y K G+L 
Sbjct: 131 MREMGLDMDXFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190

Query: 225 NAECVFNEM-PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           +A+ VF  M   RD V WNS+I  + Q+ +  +AL L++ M R G   D  TL SVL A 
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAF 250

Query: 284 TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKC-GSLEDAMSVFSRMIQKDVISW 340
           T L  L  G Q H  ++K  +  +  + + L+D+Y KC G + D   VF  + + D++ W
Sbjct: 251 TCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLW 310

Query: 341 STMISGLAQN-GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           +TM+SG +QN  + ++AL+ F  M+    +PN  + V V+ ACS+      G     S+ 
Sbjct: 311 NTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQG-KQIHSLA 369

Query: 400 KFYGIDPGREHY-SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
               I   R    + +I +  + G LQ+A +L   M  E + V+  +++     H
Sbjct: 370 LKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNSMIAGYAQH 423


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 246/607 (40%), Positives = 369/607 (60%), Gaps = 28/607 (4%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M  HG       Y  ++  C+ + A  E + VH H++   + P  FL   L+ ++ K   
Sbjct: 234 MALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDS 293

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR---EGV---------- 171
           L +A  +FD+MPERNVVSWT MISAY       +AL L    ++    GV          
Sbjct: 294 LGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSN 353

Query: 172 --------RPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKL 220
                    PN FT++ VL +C S    I+ RQ+H  IIK+ +E  VFV S+L+D+YAK 
Sbjct: 354 PNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKD 413

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           G++  A  VF  +P RD+V   +II G+AQ    +EAL L++R++  G  ++  T T VL
Sbjct: 414 GKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVL 473

Query: 281 RACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
            A +GLA L+LG QVH HVL+ +    ++L N+L+DMY KCG+L  +  +F  M ++ VI
Sbjct: 474 TALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVI 533

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKV-SRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           SW+ M+ G +++G  +E LKLF  M+  +++KP+ +TI+ VL  CSH G  + G N F  
Sbjct: 534 SWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFND 593

Query: 398 MKKF-YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
           M      ++P  EHY C++DLLGR+G+++EA + I +MP+EP A  W +LLGAC+VH N 
Sbjct: 594 MSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNV 653

Query: 457 DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEV 516
           D+   A +++L ++P + G Y++LSN+YA++ +W++V+ +R  M  + +TKEPG S IE+
Sbjct: 654 DIGEFAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIEL 713

Query: 517 NKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHS 576
           ++ +H F+ +D SHP+ ++I   +K L      VGY PD + VL D++ EQKE  +  HS
Sbjct: 714 DQVLHTFHASDRSHPRREEICMKVKELSTSFKEVGYVPDLSCVLHDVDEEQKEKILLGHS 773

Query: 577 EKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGN 636
           EKLA+ FGL++      IR+ KNLRIC DCH FAK  +K+  + + +RD  R+H    G 
Sbjct: 774 EKLALSFGLIASPASVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFHRIVGGK 833

Query: 637 CSCGDYW 643
           CSC DYW
Sbjct: 834 CSCEDYW 840



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 33/214 (15%)

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCG 320
           +M   GF        ++L  C        G +VH H++K  Y   + L   L+ +Y KC 
Sbjct: 233 QMALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCD 292

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF--------------ESMKVS 366
           SL DA +VF  M +++V+SW+ MIS  +Q GY+ +AL LF              + +K+S
Sbjct: 293 SLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLS 352

Query: 367 R-------IKPNYITIVGVLFACSHA-GFVEDGWNHFKSMKKFYGIDPGREHY---SCMI 415
                    +PN  T   VL +C+ + GF+     H   +K  Y      +H    S ++
Sbjct: 353 NPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNY-----EDHVFVGSSLL 407

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           D+  + GK+ EA  +   +P E D V+  A++  
Sbjct: 408 DMYAKDGKIHEARTVFECLP-ERDVVSCTAIISG 440



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 95/207 (45%), Gaps = 11/207 (5%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    +Q  G++++ VTY  ++       A++  K VHNHVL         L N L++
Sbjct: 450 ALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLID 509

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMF 176
           M+ K   L  ++ +FD M ER V+SW  M+  Y       + L+L   M  E  V+P+  
Sbjct: 510 MYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSV 569

Query: 177 TYSAVLRACD-------SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           T  AVL  C         L I   +  G I+V  E  +     ++D+  + G +  A   
Sbjct: 570 TILAVLSGCSHGGLEDKGLNIFNDMSSGKIEV--EPKMEHYGCVVDLLGRSGRVEEAFEF 627

Query: 230 FNEMPTRDL-VVWNSIIGGFAQNSDVD 255
             +MP      +W S++G    +S+VD
Sbjct: 628 IKKMPFEPTAAIWGSLLGACRVHSNVD 654


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/626 (38%), Positives = 368/626 (58%), Gaps = 40/626 (6%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+K   ++Q  G++ D   +    K C         K VH+     G   + F+ N L++
Sbjct: 62  AIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIH 121

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            + K   +E A+ +FD +  R+VVSWT++ S Y       K +++   M   GV+PN  T
Sbjct: 122 AYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMT 181

Query: 178 YSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            S++L AC  L  L+   ++H   ++ G   ++FV SAL+ +YAK   +R A  VF+ MP
Sbjct: 182 VSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMP 241

Query: 235 TRDLV-----------------------------------VWNSIIGGFAQNSDVDEALN 259
            RD+V                                    WN++IGG  +N   +EA+ 
Sbjct: 242 HRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVE 301

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYC 317
           ++++M++ GF  ++ T++S+L AC+    L +G ++H +V ++    DL    ALL MY 
Sbjct: 302 MFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYA 361

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           KCG L  + +VF  M +KDV++W+TMI   A +G  +EAL LF+ M +SR++PN +T  G
Sbjct: 362 KCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTG 421

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           VL  CSH+  VE+G   F SM + + ++P   HYSC++D+  RAG+L EA K I  MP E
Sbjct: 422 VLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPME 481

Query: 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497
           P A  W ALL AC+V++N +LA  +AKK+  ++P +PG Y+ L NI   ++ W E ++VR
Sbjct: 482 PTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVR 541

Query: 498 KTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTN 557
             M+ RGITK PGCSW++V  ++H F V D S+ + DKI   L  L++K+   GY PDT+
Sbjct: 542 ILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTD 601

Query: 558 YVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKME 617
           YVLQD++ E+K +S+  HSEKLA+ FG+++L    TIR+ KNLRICGDCH   K  +K+ 
Sbjct: 602 YVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVV 661

Query: 618 NQTIVIRDPIRYHHFQDGNCSCGDYW 643
              IV+RD +R+HHF++GNCSC D W
Sbjct: 662 GVIIVVRDSLRFHHFKNGNCSCKDLW 687



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 191/396 (48%), Gaps = 48/396 (12%)

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           L+ + +       A+ LFD +P+ +  + +T+ISA     ++++A+++   +   G++P+
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 175 MFTYSAVLRAC----DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           M  + A  +AC    D+L + +++H    + G  SDVFV +ALI  Y K   +  A  VF
Sbjct: 78  MPVFLAAAKACAVSGDALRV-KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 136

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           +++  RD+V W S+   + +     + +++++ M  +G   +  T++S+L AC  L  L+
Sbjct: 137 DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLK 196

Query: 291 LGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRMIQKDVIS------- 339
            G ++H   ++  H +++N    +AL+ +Y KC S+ +A  VF  M  +DV+S       
Sbjct: 197 SGKEIHGFAVR--HGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTA 254

Query: 340 ----------------------------WSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
                                       W+ +I G  +NG S+EA+++F  M+    KPN
Sbjct: 255 YFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPN 314

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            ITI  +L ACS +  +  G      + + + +       + ++ +  + G L  + + +
Sbjct: 315 EITISSILPACSFSENLRMGKEIHCYVFRHWKVG-DLTSTTALLYMYAKCGDLNLS-RNV 372

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            +M    D V W  ++ A  +H N   A+    K+L
Sbjct: 373 FDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKML 408



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 176/379 (46%), Gaps = 52/379 (13%)

Query: 50  CYQR-DLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY +   PR  M     M   GV+ + +T + ++  C     ++  K +H   +  G   
Sbjct: 153 CYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVV 212

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
             F+ + L++++ K   + EA+++FD MP R+VVSW  +++AY   K  +K   L + M 
Sbjct: 213 NLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMS 272

Query: 168 REGVR-----------------------------------PNMFTYSAVLRAC---DSLI 189
           R+GVR                                   PN  T S++L AC   ++L 
Sbjct: 273 RDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLR 332

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           + +++HC + +     D+   +AL+ +YAK G+L  +  VF+ M  +D+V WN++I   A
Sbjct: 333 MGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANA 392

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH----D 305
            + +  EAL L+ +M  +    +  T T VL  C+   L+E G Q+  + +  DH    D
Sbjct: 393 MHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQI-FNSMGRDHLVEPD 451

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
               + ++D+Y + G L +A      M ++    +W  +++  A   Y    L    + K
Sbjct: 452 ANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLA--ACRVYKNVELAKISAKK 509

Query: 365 VSRIKP----NYITIVGVL 379
           +  I+P    NY+++  +L
Sbjct: 510 LFEIEPNNPGNYVSLFNIL 528



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 149/330 (45%), Gaps = 26/330 (7%)

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           LI +   +G+   A  +F+ +P  D    +++I     +   +EA+ +Y  ++  G   D
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 273 QSTLTSVLRAC--TGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSV 328
                +  +AC  +G AL     +VH    +     D+ + NAL+  Y KC  +E A  V
Sbjct: 78  MPVFLAAAKACAVSGDALRV--KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRV 135

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           F  ++ +DV+SW+++ S   + G+ ++ + +F  M  S +KPN +T+  +L AC+    +
Sbjct: 136 FDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDL 195

Query: 389 EDGWNHFKSMKKF---YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           + G    K +  F   +G+       S ++ L  +   ++EA  +   MP+  D V+W  
Sbjct: 196 KSG----KEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR-DVVSWNG 250

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQ-DPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
           +L A   ++  +       K+     + D  T+  +      + + +E  E+ + M+  G
Sbjct: 251 VLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMG 310

Query: 505 ITKE--------PGCSWIE---VNKQIHAF 523
                       P CS+ E   + K+IH +
Sbjct: 311 FKPNEITISSILPACSFSENLRMGKEIHCY 340


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/624 (39%), Positives = 380/624 (60%), Gaps = 20/624 (3%)

Query: 27  PPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLA 86
           P V   N I R  SS                A++    MQ  GV  D  T   ++K C  
Sbjct: 132 PSVFLWNAIIRGYSS----------HNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSG 181

Query: 87  RHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTM 146
              +E  K VH  +   GFE + F+ N L+ ++ K   +E+A+++F+ + +RN+VSWT+M
Sbjct: 182 VPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSM 241

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVG- 202
           IS Y    +  +AL +   M +  V+P+     +VLRA   +  L Q   +H  ++K+G 
Sbjct: 242 ISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGL 301

Query: 203 -FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLY 261
            FE D+ +  +L  +YAK G++  A   F++M   ++++WN++I G+A+N   +EA+ L+
Sbjct: 302 EFEPDLLI--SLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLF 359

Query: 262 KRMKRAGFAADQSTLTSVLRACTGLALLELGTQV--HVHVLKYDHDLILNNALLDMYCKC 319
           + M       D  T+ S + AC  +  L+L   +  +++  +Y +D+ +N AL+DM+ KC
Sbjct: 360 QEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKC 419

Query: 320 GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL 379
           GS++ A  VF R + KDV+ WS MI G   +G  Q+A+ LF +MK + + PN +T VG+L
Sbjct: 420 GSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLL 479

Query: 380 FACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD 439
            AC+H+G VE+GW  F SMK +YGI+   +HY+C++DLLGR+G L EA   I  MP EP 
Sbjct: 480 TACNHSGLVEEGWELFHSMK-YYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPG 538

Query: 440 AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKT 499
              W ALLGACK++R+  L   AA+++ +LDP + G Y+ LSN+YA+S+ WD VA+VR  
Sbjct: 539 VSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRIL 598

Query: 500 MRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYV 559
           MR +G++K+ G S IE+N ++ AF V D SHP+  +I + L+ L ++L   G+ P    V
Sbjct: 599 MREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESV 658

Query: 560 LQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQ 619
           L DL  E+KE+++  HSE+LAI +GL+S   G T+RI KNLR C +CH+  KL +K+ N+
Sbjct: 659 LHDLNQEEKEETLCNHSERLAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKLVNR 718

Query: 620 TIVIRDPIRYHHFQDGNCSCGDYW 643
            IV+RD  R+HHF++G CSC DYW
Sbjct: 719 EIVVRDANRFHHFKNGVCSCRDYW 742



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 148/516 (28%), Positives = 245/516 (47%), Gaps = 34/516 (6%)

Query: 8   KLKWTKPSSQARQFSLTITPP-VASCNTITRNSSSLLDDFTRFC-YQRDLPRAMKAMHAM 65
           KL  ++ +  +  F L   PP +      T  +S       +F  +   LP  +     +
Sbjct: 4   KLSLSRTNLNSALFFLNFFPPRIRPLGLPTATASEFPATLFKFLNFYSSLPLPLDHSDYI 63

Query: 66  QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL 125
              G   DS   + L      RH  +    +H  ++  G     FLV   +N       +
Sbjct: 64  PYSGFDFDSFFSSLLDHSVHKRHLNQ----IHAQLVVSGLVESGFLVTKFVNASWNIGEI 119

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
             A+ +FD+ PE +V  W  +I  Y        A+E+   M   GV P+ FT   VL+AC
Sbjct: 120 GYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKAC 179

Query: 186 DSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
             + +L   +++H  I ++GFESDVFV++ L+ +YAK G +  A  VF  +  R++V W 
Sbjct: 180 SGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWT 239

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK- 301
           S+I G+ QN    EAL ++ +M++     D   L SVLRA T +  LE G  +H  V+K 
Sbjct: 240 SMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKM 299

Query: 302 ---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
              ++ DL++  +L  MY KCG +  A S F +M   +V+ W+ MISG A+NGY+ EA+ 
Sbjct: 300 GLEFEPDLLI--SLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVG 357

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY------- 411
           LF+ M    I+ + IT+   + AC+  G ++        + K+ G    +  Y       
Sbjct: 358 LFQEMISKNIRTDSITVRSAILACAQVGSLD--------LAKWMGDYINKTEYRNDVFVN 409

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH-RNTD-LAICAAKKILNL 469
           + +ID+  + G +  A + + +   + D V W A++    +H R  D + +  A K   +
Sbjct: 410 TALIDMFAKCGSVDLA-REVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGV 468

Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
            P D  T++ L     +S   +E  E+  +M+  GI
Sbjct: 469 CPNDV-TFVGLLTACNHSGLVEEGWELFHSMKYYGI 503


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/595 (38%), Positives = 358/595 (60%), Gaps = 5/595 (0%)

Query: 54   DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
            DL  + +    MQ   +  +  TY  ++K C+    +E  + +H+ ++   F+   ++ +
Sbjct: 470  DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCS 529

Query: 114  ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            +L++M+ K   L+ A  +  +   ++VVSWTTMI+ Y     +DKAL     ML  G+R 
Sbjct: 530  VLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 589

Query: 174  NMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
            +    +  + AC  L  L+   Q+H      GF SD+  ++AL+ +Y++ G++  +   F
Sbjct: 590  DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAF 649

Query: 231  NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
             +    D + WN+++ GF Q+ + +EAL ++ RM R G   +  T  S ++A +  A ++
Sbjct: 650  EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMK 709

Query: 291  LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
             G QVH  + K  YD +  + NAL+ MY KCGS+ DA   F  +  K+ +SW+ +I+  +
Sbjct: 710  QGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYS 769

Query: 349  QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
            ++G+  EAL  F+ M  S ++PN++T+VGVL ACSH G V+ G  +F+SM   YG+ P  
Sbjct: 770  KHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKP 829

Query: 409  EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
            EHY C++D+L RAG L  A + I EMP +PDA+ WR LL AC VH+N ++   AA  +L 
Sbjct: 830  EHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLE 889

Query: 469  LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
            L+P+D  TY+LLSN+YA S+KWD     R+ M+ +G+ KEPG SWIEV   IH+F V D 
Sbjct: 890  LEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQ 949

Query: 529  SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
            +HP  D+I+++ + L ++   +GY  D   +L +L+ EQK+  I  HSEKLAI FGL+SL
Sbjct: 950  NHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSL 1009

Query: 589  TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
                 I + KNLR+C DCH + K  +K+ N+ I++RD  R+HHF+ G CSC DYW
Sbjct: 1010 PATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 123/404 (30%), Positives = 202/404 (50%), Gaps = 11/404 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +AM+    M   G+  DS T A L+  C A   +   + +H +    GF     +   LL
Sbjct: 372 KAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALL 431

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF--MLREGVRPN 174
           N++ K + +E A   F +    NVV W  M+ AY    ++D      IF  M  E + PN
Sbjct: 432 NLYAKCADIETALDYFLETEVENVVLWNVMLVAY--GLLDDLRNSFRIFRQMQIEEIVPN 489

Query: 175 MFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
            +TY ++L+ C     L +  Q+H  IIK  F+ + +V S LID+YAKLG+L  A  +  
Sbjct: 490 QYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILI 549

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
               +D+V W ++I G+ Q +  D+AL  +++M   G  +D+  LT+ + AC GL  L+ 
Sbjct: 550 RFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE 609

Query: 292 GTQVHVH--VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G Q+H    V  +  DL   NAL+ +Y +CG +E++   F +    D I+W+ ++SG  Q
Sbjct: 610 GQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQ 669

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           +G ++EAL++F  M    I  N  T    + A S    ++ G      + K  G D   E
Sbjct: 670 SGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITK-TGYDSETE 728

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             + +I +  + G + +A K   E+  + + V+W A++ A   H
Sbjct: 729 VCNALISMYAKCGSISDAEKQFLEVSTK-NEVSWNAIINAYSKH 771



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 222/459 (48%), Gaps = 12/459 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A++    M   G+      ++ ++  C    ++E  + +H  VL  GF  +T++ N L+
Sbjct: 271 EAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALV 330

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +++     L  A+ +F  M +R+ V++ T+I+        +KA+EL   M  +G+ P+  
Sbjct: 331 SLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSN 390

Query: 177 TYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T ++++ AC    +L   +QLH    K+GF S+  +  AL+++YAK  ++  A   F E 
Sbjct: 391 TLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLET 450

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
              ++V+WN ++  +    D+  +  ++++M+      +Q T  S+L+ C  L  LELG 
Sbjct: 451 EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE 510

Query: 294 QVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+H  ++K +  L   + + L+DMY K G L+ A  +  R   KDV+SW+TMI+G  Q  
Sbjct: 511 QIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYN 570

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           +  +AL  F  M    I+ + + +   + AC+    +++G     +     G        
Sbjct: 571 FDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEG-QQIHAQACVSGFSSDLPFQ 629

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           + ++ L  R GK++E+  L  E     D + W AL+   +   N + A+    + +N + 
Sbjct: 630 NALVTLYSRCGKIEESY-LAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVR-MNREG 687

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
            D   +   S + A S    E A +++  +   +  + G
Sbjct: 688 IDNNNFTFGSAVKAAS----ETANMKQGKQVHAVITKTG 722



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 202/397 (50%), Gaps = 9/397 (2%)

Query: 60  KAMHAMQCHGVRADSVTYAELIKCCLARH-AVEEAKLVHNHVLSGGFEPETFLVNILLNM 118
           K + +++  G+R +  T   L++ CL  + +++E + +H+ +L  G +    L   L + 
Sbjct: 70  KRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDF 129

Query: 119 HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTY 178
           ++    L  A  +FD+MPER + +W  MI       +  +   L + M+ E V PN  T+
Sbjct: 130 YLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTF 189

Query: 179 SAVLRACD----SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           S VL AC     +  ++ Q+H  I+  G      V + LID+Y++ G +  A  VF+ + 
Sbjct: 190 SGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLR 249

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            +D   W ++I G ++N    EA+ L+  M   G        +SVL AC  +  LE+G Q
Sbjct: 250 LKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQ 309

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  VLK  +  D  + NAL+ +Y   G+L  A  +FS M Q+D ++++T+I+GL+Q GY
Sbjct: 310 LHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGY 369

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            ++A++LF+ M +  ++P+  T+  ++ ACS  G +  G        K  G     +   
Sbjct: 370 GEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKL-GFASNNKIEG 428

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            +++L  +   ++ A+    E   E + V W  +L A
Sbjct: 429 ALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVA 464



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 209/413 (50%), Gaps = 14/413 (3%)

Query: 65  MQCHGVRADSVTYAELIKCCLARH-AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123
           M    V  +  T++ +++ C     A +  + +H  +L  G    T + N L++++ +  
Sbjct: 177 MVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNG 236

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
            ++ A+ +FD +  ++  SW  MIS     +   +A+ L   M   G+ P  + +S+VL 
Sbjct: 237 FVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLS 296

Query: 184 AC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           AC   +SL I  QLH  ++K+GF SD +V +AL+ +Y  LG L +AE +F+ M  RD V 
Sbjct: 297 ACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVT 356

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           +N++I G +Q    ++A+ L+KRM   G   D +TL S++ AC+    L  G Q+H +  
Sbjct: 357 YNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTT 416

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K  +  +  +  ALL++Y KC  +E A+  F     ++V+ W+ M+         + + +
Sbjct: 417 KLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFR 476

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSC--MI 415
           +F  M++  I PN  T   +L  C   G +E G   H + +K  + ++     Y C  +I
Sbjct: 477 IFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA----YVCSVLI 532

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           D+  + GKL  A  ++     + D V+W  ++     +   D A+   +++L+
Sbjct: 533 DMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAGYTQYNFDDKALTTFRQMLD 584



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 154/328 (46%), Gaps = 16/328 (4%)

Query: 170 GVRPNMFTYSAVLRAC----DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           G+RPN  T   +L  C     SL   R+LH  I+K+G +S+  +   L D Y   G+L  
Sbjct: 79  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VF+EMP R +  WN +I   A  + + E   L+ RM       ++ T + VL AC G
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198

Query: 286 LAL-LELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            ++  ++  Q+H  +L        ++ N L+D+Y + G ++ A  VF  +  KD  SW  
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVA 258

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKF 401
           MISGL++N    EA++LF  M V  I P       VL AC     +E G   H   +K  
Sbjct: 259 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 318

Query: 402 YGIDPGREHYSC--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
           +  D     Y C  ++ L    G L  A  +   M  + DAVT+  L+         + A
Sbjct: 319 FSSDT----YVCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLINGLSQCGYGEKA 373

Query: 460 ICAAKKILNLDPQDPGTYILLSNIYANS 487
           +   K+ ++LD  +P +  L S + A S
Sbjct: 374 MELFKR-MHLDGLEPDSNTLASLVVACS 400


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/571 (41%), Positives = 359/571 (62%), Gaps = 7/571 (1%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF-EPETF 110
           Q D    + A+  +Q   +  D   Y++L+K C     VE+ ++VH H++   F +    
Sbjct: 65  QSDGGTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLV 124

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           L NI++NM+ K   L++A+ +FD+MP +++V+WT +I+ +        AL L   MLR G
Sbjct: 125 LQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLG 184

Query: 171 VRPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
           ++PN FT S++L+A  S   L    QLH   +K G++S V+V SAL+D+YA+ G +  A+
Sbjct: 185 LQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQ 244

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
             F+ MPT+  V WN++I G A+  + + AL+L  +M+R  F     T +SV  AC  + 
Sbjct: 245 LAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIG 304

Query: 288 LLELGTQVHVHVLKYDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
            LE G  VH H++K    LI  + N LLDMY K GS++DA  VF R+++ DV+SW+TM++
Sbjct: 305 ALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLT 364

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           G AQ+G  +E L  FE M    I+PN I+ + VL ACSH+G +++G  +F+ MKK Y ++
Sbjct: 365 GCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVE 423

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
           P   HY   +DLLGR G L  A + I EMP EP A  W ALLGAC++H+N +L + AA++
Sbjct: 424 PDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAER 483

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
              LDP D G  +LLSNIYA++ +W +VA+VRK M+  G+ K+P CSW+E+   +H F  
Sbjct: 484 AFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVA 543

Query: 526 ADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGL 585
            D +HPQI +I    + +  K+  +GY PDT++VL  ++ +++E+ +QYHSEKLA+ F L
Sbjct: 544 NDETHPQIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFAL 603

Query: 586 MSLTQGKTIRIRKNLRICGDCHTFAKLTAKM 616
           ++   G  IRI+KN+R+CGDCH   K  +K+
Sbjct: 604 LNTPTGSPIRIKKNIRVCGDCHAAIKFVSKI 634


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/595 (38%), Positives = 358/595 (60%), Gaps = 5/595 (0%)

Query: 54   DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
            DL  + +    MQ   +  +  TY  ++K C+    +E  + +H+ ++   F+   ++ +
Sbjct: 430  DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCS 489

Query: 114  ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            +L++M+ K   L+ A  +  +   ++VVSWTTMI+ Y     +DKAL     ML  G+R 
Sbjct: 490  VLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 549

Query: 174  NMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
            +    +  + AC  L  L+   Q+H      GF SD+  ++AL+ +Y++ G++  +   F
Sbjct: 550  DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAF 609

Query: 231  NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
             +    D + WN+++ GF Q+ + +EAL ++ RM R G   +  T  S ++A +  A ++
Sbjct: 610  EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMK 669

Query: 291  LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
             G QVH  + K  YD +  + NAL+ MY KCGS+ DA   F  +  K+ +SW+ +I+  +
Sbjct: 670  QGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYS 729

Query: 349  QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
            ++G+  EAL  F+ M  S ++PN++T+VGVL ACSH G V+ G  +F+SM   YG+ P  
Sbjct: 730  KHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKP 789

Query: 409  EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
            EHY C++D+L RAG L  A + I EMP +PDA+ WR LL AC VH+N ++   AA  +L 
Sbjct: 790  EHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLE 849

Query: 469  LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
            L+P+D  TY+LLSN+YA S+KWD     R+ M+ +G+ KEPG SWIEV   IH+F V D 
Sbjct: 850  LEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQ 909

Query: 529  SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
            +HP  D+I+++ + L ++   +GY  D   +L +L+ EQK+  I  HSEKLAI FGL+SL
Sbjct: 910  NHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSL 969

Query: 589  TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
                 I + KNLR+C DCH + K  +K+ N+ I++RD  R+HHF+ G CSC DYW
Sbjct: 970  PATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 123/404 (30%), Positives = 202/404 (50%), Gaps = 11/404 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +AM+    M   G+  DS T A L+  C A   +   + +H +    GF     +   LL
Sbjct: 332 KAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALL 391

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF--MLREGVRPN 174
           N++ K + +E A   F +    NVV W  M+ AY    ++D      IF  M  E + PN
Sbjct: 392 NLYAKCADIETALDYFLETEVENVVLWNVMLVAY--GLLDDLRNSFRIFRQMQIEEIVPN 449

Query: 175 MFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
            +TY ++L+ C     L +  Q+H  IIK  F+ + +V S LID+YAKLG+L  A  +  
Sbjct: 450 QYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILI 509

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
               +D+V W ++I G+ Q +  D+AL  +++M   G  +D+  LT+ + AC GL  L+ 
Sbjct: 510 RFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE 569

Query: 292 GTQVHVH--VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G Q+H    V  +  DL   NAL+ +Y +CG +E++   F +    D I+W+ ++SG  Q
Sbjct: 570 GQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQ 629

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           +G ++EAL++F  M    I  N  T    + A S    ++ G      + K  G D   E
Sbjct: 630 SGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITK-TGYDSETE 688

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             + +I +  + G + +A K   E+  + + V+W A++ A   H
Sbjct: 689 VCNALISMYAKCGSISDAEKQFLEVSTK-NEVSWNAIINAYSKH 731



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 222/459 (48%), Gaps = 12/459 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A++    M   G+      ++ ++  C    ++E  + +H  VL  GF  +T++ N L+
Sbjct: 231 EAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALV 290

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +++     L  A+ +F  M +R+ V++ T+I+        +KA+EL   M  +G+ P+  
Sbjct: 291 SLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSN 350

Query: 177 TYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T ++++ AC    +L   +QLH    K+GF S+  +  AL+++YAK  ++  A   F E 
Sbjct: 351 TLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLET 410

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
              ++V+WN ++  +    D+  +  ++++M+      +Q T  S+L+ C  L  LELG 
Sbjct: 411 EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE 470

Query: 294 QVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+H  ++K +  L   + + L+DMY K G L+ A  +  R   KDV+SW+TMI+G  Q  
Sbjct: 471 QIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYN 530

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           +  +AL  F  M    I+ + + +   + AC+    +++G     +     G        
Sbjct: 531 FDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEG-QQIHAQACVSGFSSDLPFQ 589

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           + ++ L  R GK++E+  L  E     D + W AL+   +   N + A+    + +N + 
Sbjct: 590 NALVTLYSRCGKIEESY-LAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVR-MNREG 647

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
            D   +   S + A S    E A +++  +   +  + G
Sbjct: 648 IDNNNFTFGSAVKAAS----ETANMKQGKQVHAVITKTG 682



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 209/413 (50%), Gaps = 14/413 (3%)

Query: 65  MQCHGVRADSVTYAELIKCCLARH-AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123
           M    V  +  T++ +++ C     A +  + +H  +L  G    T + N L++++ +  
Sbjct: 137 MVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNG 196

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
            ++ A+ +FD +  ++  SW  MIS     +   +A+ L   M   G+ P  + +S+VL 
Sbjct: 197 FVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLS 256

Query: 184 AC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           AC   +SL I  QLH  ++K+GF SD +V +AL+ +Y  LG L +AE +F+ M  RD V 
Sbjct: 257 ACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVT 316

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           +N++I G +Q    ++A+ L+KRM   G   D +TL S++ AC+    L  G Q+H +  
Sbjct: 317 YNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTT 376

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K  +  +  +  ALL++Y KC  +E A+  F     ++V+ W+ M+         + + +
Sbjct: 377 KLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFR 436

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSC--MI 415
           +F  M++  I PN  T   +L  C   G +E G   H + +K  + ++     Y C  +I
Sbjct: 437 IFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA----YVCSVLI 492

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           D+  + GKL  A  ++     + D V+W  ++     +   D A+   +++L+
Sbjct: 493 DMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAGYTQYNFDDKALTTFRQMLD 544



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 202/397 (50%), Gaps = 9/397 (2%)

Query: 60  KAMHAMQCHGVRADSVTYAELIKCCLARH-AVEEAKLVHNHVLSGGFEPETFLVNILLNM 118
           K + +++  G+R +  T   L++ CL  + +++E + +H+ +L  G +    L   L + 
Sbjct: 30  KRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDF 89

Query: 119 HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTY 178
           ++    L  A  +FD+MPER + +W  MI       +  +   L + M+ E V PN  T+
Sbjct: 90  YLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTF 149

Query: 179 SAVLRACD----SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           S VL AC     +  ++ Q+H  I+  G      V + LID+Y++ G +  A  VF+ + 
Sbjct: 150 SGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLR 209

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            +D   W ++I G ++N    EA+ L+  M   G        +SVL AC  +  LE+G Q
Sbjct: 210 LKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQ 269

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  VLK  +  D  + NAL+ +Y   G+L  A  +FS M Q+D ++++T+I+GL+Q GY
Sbjct: 270 LHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGY 329

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            ++A++LF+ M +  ++P+  T+  ++ ACS  G +  G        K  G     +   
Sbjct: 330 GEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKL-GFASNNKIEG 388

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            +++L  +   ++ A+    E   E + V W  +L A
Sbjct: 389 ALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVA 424



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 154/328 (46%), Gaps = 16/328 (4%)

Query: 170 GVRPNMFTYSAVLRAC----DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           G+RPN  T   +L  C     SL   R+LH  I+K+G +S+  +   L D Y   G+L  
Sbjct: 39  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 98

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VF+EMP R +  WN +I   A  + + E   L+ RM       ++ T + VL AC G
Sbjct: 99  AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 158

Query: 286 LAL-LELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            ++  ++  Q+H  +L        ++ N L+D+Y + G ++ A  VF  +  KD  SW  
Sbjct: 159 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVA 218

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKF 401
           MISGL++N    EA++LF  M V  I P       VL AC     +E G   H   +K  
Sbjct: 219 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 278

Query: 402 YGIDPGREHYSC--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
           +  D     Y C  ++ L    G L  A  +   M  + DAVT+  L+         + A
Sbjct: 279 FSSDT----YVCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLINGLSQCGYGEKA 333

Query: 460 ICAAKKILNLDPQDPGTYILLSNIYANS 487
           +   K+ ++LD  +P +  L S + A S
Sbjct: 334 MELFKR-MHLDGLEPDSNTLASLVVACS 360


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/574 (41%), Positives = 358/574 (62%), Gaps = 10/574 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           YA L++ C+AR A++  K +H  V   GF  +T +   L+N++     L  A++LFD++P
Sbjct: 78  YASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIP 137

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQ 193
           + N+  W  +I  Y      + A++L   M   G+ P+ FT+  VL+AC +L  +   R+
Sbjct: 138 KHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGRE 197

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H  +++ G+E DVFV +ALID+YAK G + +A  VF+++  RD V+WNS++  ++QN  
Sbjct: 198 IHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGH 257

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD---HDLILNN 310
            D  L+L   M   G    ++TL + + A    A L  G ++H    + +   HD +   
Sbjct: 258 PDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKV-KT 316

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI-K 369
           AL+DMY KCGS+  A ++F R+  K V+SW+ MI+G A +G++ EAL LFE M  +R+ K
Sbjct: 317 ALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEM--NRVAK 374

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           P++IT VGVL ACSH G +E+GW  F++M + Y IDP  +HY+CM+DLLG +G+L EA  
Sbjct: 375 PDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYN 434

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489
           LI +M   PD+  W ALL +CK+H N +L   A ++++ L+P D G Y++LSNIYA + K
Sbjct: 435 LIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGK 494

Query: 490 WDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549
           W+ VA++RK M  R + K   CSWIEV  ++HAF   D+SHP  D+I   L+ +   +  
Sbjct: 495 WEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKE 554

Query: 550 VGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
            GY+P T  V  D+E ++K + +  HSE+LAI FGL+S   G  + I KNLRIC DCH  
Sbjct: 555 AGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVA 614

Query: 610 AKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            K  +K+  + I +RD  RYHHF+DG CSCGDYW
Sbjct: 615 IKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 151/295 (51%), Gaps = 8/295 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++  + M  +G+  D+ T+  ++K C A  A+E  + +H HV+  G+E + F+   L++
Sbjct: 160 AVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALID 219

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +  A+ +FD++  R+ V W +M++AY      D  L L   M+  G+RP   T
Sbjct: 220 MYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEAT 279

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
               + A      L   R+LH    +  FES   V++AL+D+YAK G +R A  +F  + 
Sbjct: 280 LVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLG 339

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG-- 292
            + +V WN++I G+A +    EAL+L++ M R     D  T   VL AC+   LLE G  
Sbjct: 340 VKRVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWM 398

Query: 293 -TQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMIS 345
             +  +   K D  +     ++D+    G L++A ++  +M +  D   W  +++
Sbjct: 399 FFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLN 453



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 28/215 (13%)

Query: 274 STLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
           S   S+L++C     ++ G Q+H  V    +  D ++   L+++YC C SL  A  +F R
Sbjct: 76  SNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDR 135

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS-------- 383
           + + ++  W+ +I G A NG  + A++L+  M    + P+  T   VL AC+        
Sbjct: 136 IPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHG 195

Query: 384 ---HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
              H   V+ GW        F G        + +ID+  + G +  A ++  ++    DA
Sbjct: 196 REIHEHVVQTGWEK----DVFVG--------AALIDMYAKCGCVGSAREVFDKILVR-DA 242

Query: 441 VTWRALLGACKVHRNTD--LAICAAKKILNLDPQD 473
           V W ++L A   + + D  L++C+   +  L P +
Sbjct: 243 VLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTE 277


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/569 (41%), Positives = 355/569 (62%), Gaps = 6/569 (1%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139
           +++ C     V   + VH   +      +T   N LL+M+ K  +L+ A ++FD M  R 
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 140 VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHC 196
           VV+WT++I+AY    ++D+A+ L   M REGV P++FT + VL AC    SL   + +H 
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHN 123

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
            I +   +S++FV +AL+D+YAK G + +A  VF EMP +D++ WN++IGG+++NS  +E
Sbjct: 124 YIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNE 183

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLD 314
           AL+L+  M       D +TL  +L AC  LA L+ G +VH H+L+  +  D  + NAL+D
Sbjct: 184 ALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVD 242

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           MY KCG    A  +F  +  KD+I+W+ MI+G   +G+   A+  F  M+ + I+P+ ++
Sbjct: 243 MYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVS 302

Query: 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
            + +L+ACSH+G +++GW  F  M+    + P  EHY+C++DLL R+GKL  A K I  M
Sbjct: 303 FISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSM 362

Query: 435 PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494
           P EPDA  W ALL  C++H +  LA   A+ +  L+P++ G Y+LL+N YA ++KW+EV 
Sbjct: 363 PIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVK 422

Query: 495 EVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAP 554
           ++R+ +  RG+ K PGCSWIEV  ++H F   +SSHPQ  KI   LK L  K+   GY P
Sbjct: 423 KLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYFP 482

Query: 555 DTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTA 614
            T Y L + +  QKE ++  HSEKLA+ FG+++L   +TIR+ KNLR+CGDCH  AK  +
Sbjct: 483 KTRYALINADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDCHEMAKFIS 542

Query: 615 KMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           K   + IV+RD  R+HHF+DG C C  +W
Sbjct: 543 KTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 157/298 (52%), Gaps = 10/298 (3%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A++  H M   GV  D  T   ++  C    ++E  K VHN++     +   F+ N L+
Sbjct: 82  EAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALM 141

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   +E+A  +F +MP ++++SW TMI  Y    + ++AL L   M+ E ++P+  
Sbjct: 142 DMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGT 200

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T + +L AC SL  L   +++H  I++ GF SD  V +AL+D+Y K G    A  +F+ +
Sbjct: 201 TLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMI 260

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           PT+DL+ W  +I G+  +   + A+  +  M++AG   D+ +  S+L AC+   LL+ G 
Sbjct: 261 PTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGW 320

Query: 294 QVHVHVLKYDHD----LILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
           +   +V++ + +    L     ++D+  + G L  A      M I+ D   W  ++SG
Sbjct: 321 RF-FNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSG 377



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 8/178 (4%)

Query: 276 LTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
           + S+L+AC     + LG  VH   +K          N LLDMY KCG L+ A+ VF  M 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393
            + V++W+++I+  A+ G S EA++LF  M    + P+  TI  VL AC+  G +E+G +
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 394 HFKSMKKFYGIDPGREHYSC--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
               +++    D     + C  ++D+  + G +++A  +  EMP + D ++W  ++G 
Sbjct: 121 VHNYIREN---DMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVK-DIISWNTMIGG 174



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 105/219 (47%), Gaps = 21/219 (9%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111
           +  LP    ++       ++ D  T A ++  C +  +++  K VH H+L  GF  +  +
Sbjct: 177 KNSLPNEALSLFGDMVLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQV 236

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV 171
            N L++M+VK  +   A++LFD +P +++++WT MI+ Y      + A+     M + G+
Sbjct: 237 ANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGI 296

Query: 172 RPNMFTYSAVLRACDSLIILRQLHCGIIKVGF--------ESDVFVR----SALIDIYAK 219
            P+  ++ ++L AC         H G++  G+        E +V  +    + ++D+ A+
Sbjct: 297 EPDEVSFISILYACS--------HSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLAR 348

Query: 220 LGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
            G+L  A      MP   D  +W +++ G   + DV  A
Sbjct: 349 SGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLA 387


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/600 (39%), Positives = 370/600 (61%), Gaps = 5/600 (0%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           F  ++    A+     M  + V+ D  T+  ++K C    A+ E + +H  ++  GF   
Sbjct: 99  FTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSH 158

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F+ N L++M+     +E A+ +FD+M ERNV +W +M + Y  +   ++ ++L   ML 
Sbjct: 159 GFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLE 218

Query: 169 EGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
             +R +  T  +VL AC  L  L     ++  + + G + +  + ++L+D+YAK G++  
Sbjct: 219 LDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDT 278

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F++M  RD+V W+++I G++Q S   EAL+L+  M++A    ++ T+ S+L +C  
Sbjct: 279 ARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAV 338

Query: 286 LALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L  LE G  VH  + K    L   L  AL+D Y KCGS+E ++ VF +M  K+V+SW+ +
Sbjct: 339 LGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVL 398

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           I GLA NG  ++AL+ F  M    ++PN +T +GVL ACSHAG V++G + F SM + +G
Sbjct: 399 IQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFG 458

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           I+P  EHY CM+D+LGRAG ++EA + I  MP +P+AV WR LL +CKVH+N ++   + 
Sbjct: 459 IEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESL 518

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
           K+++ L+P   G YILLSNIYA+  +W++  +VR  M+ +GI K PGCS IE++  IH F
Sbjct: 519 KQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEF 578

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
              D+ H Q ++I   ++ +++++   GY P+T     D E + KE S+ +HSEKLAI F
Sbjct: 579 FAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAF 638

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GL+    G TIRI KNLR+C DCH   KL +K+ N+ IV+RD  R+HHF++G+CSC DYW
Sbjct: 639 GLIKSPPGTTIRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 132/433 (30%), Positives = 220/433 (50%), Gaps = 42/433 (9%)

Query: 23  LTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIK 82
           + +T P+    T T  +S  L            P   K +   QC  +R  +  +A LIK
Sbjct: 1   MAVTLPLLPAKTPTAKTSISL-----------FPENPKTLILEQCKTIRDLNEIHAHLIK 49

Query: 83  CCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVS 142
             L    + + K+  N + S           ILL   + +++      +F Q+ E +  +
Sbjct: 50  TRL----LLKPKVAENLLESAA---------ILLPTSMDYAV-----SIFRQIDEPDSPA 91

Query: 143 WTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGII 199
           +  MI  +   +   +A+ L   M    V+P+ FT+  +L+ C  L  L    Q+H  I+
Sbjct: 92  YNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIM 151

Query: 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN 259
           K GF S  FV++ LI +YA  GE+  A  VF+EM  R++  WNS+  G+ ++ + +E + 
Sbjct: 152 KCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVK 211

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV----LKYDHDLILNNALLDM 315
           L+  M       D+ TL SVL AC  LA LELG  ++ +V    LK +  LI   +L+DM
Sbjct: 212 LFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLI--TSLVDM 269

Query: 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITI 375
           Y KCG ++ A  +F +M ++DV++WS MISG +Q    +EAL LF  M+ + I PN IT+
Sbjct: 270 YAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITM 329

Query: 376 VGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
           V +L +C+  G +E G W HF   KK   +       + ++D   + G ++ ++++  +M
Sbjct: 330 VSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLG--TALMDFYAKCGSVESSIEVFGKM 387

Query: 435 PYEPDAVTWRALL 447
           P + + ++W  L+
Sbjct: 388 PVK-NVLSWTVLI 399



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 151/316 (47%), Gaps = 7/316 (2%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN  +    F  +    +    +K  H M    +R D VT   ++  C     +E  + +
Sbjct: 188 RNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWI 247

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           + +V   G +    L+  L++M+ K   ++ A+ LFDQM  R+VV+W+ MIS Y  A   
Sbjct: 248 NRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRC 307

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSAL 213
            +AL+L   M +  + PN  T  ++L +C  L  L   + +H  I K   +  V + +AL
Sbjct: 308 REALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTAL 367

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           +D YAK G + ++  VF +MP ++++ W  +I G A N    +AL  +  M       + 
Sbjct: 368 MDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPND 427

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
            T   VL AC+   L++ G  + V + +    +  +     ++D+  + G +E+A     
Sbjct: 428 VTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIK 487

Query: 331 RM-IQKDVISWSTMIS 345
            M IQ + + W T+++
Sbjct: 488 NMPIQPNAVIWRTLLA 503



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 147/310 (47%), Gaps = 12/310 (3%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKL--GELRNAECVFNEMPTRDL 238
           +L  C ++  L ++H  +IK        V   L++  A L    +  A  +F ++   D 
Sbjct: 30  ILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDS 89

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
             +N +I GF       EA+ L+K M       D+ T   +L+ C+ L  L  G Q+H  
Sbjct: 90  PAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHAL 149

Query: 299 VLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           ++K  +     + N L+ MY  CG +E A  VF  M +++V +W++M +G  ++G  +E 
Sbjct: 150 IMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEV 209

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-W-NHFKSMKKFYGIDPGREHYSCM 414
           +KLF  M    I+ + +T+V VL AC     +E G W N +   K   G+       + +
Sbjct: 210 VKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEK---GLKGNPTLITSL 266

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL-GACKVHRNTD-LAICAAKKILNLDPQ 472
           +D+  + G++  A +L  +M    D V W A++ G  +  R  + L +    +  N+DP 
Sbjct: 267 VDMYAKCGQVDTARRLFDQMDRR-DVVAWSAMISGYSQASRCREALDLFHEMQKANIDPN 325

Query: 473 DPGTYILLSN 482
           +     +LS+
Sbjct: 326 EITMVSILSS 335


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/633 (39%), Positives = 377/633 (59%), Gaps = 38/633 (6%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           +    D   A+K    M   G+  +S T+  L+K C    A EE + +H HVL  G+EP+
Sbjct: 41  YALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPD 100

Query: 109 TFLVNILLNMHVKFSLLEEA-------------------------------QVLFDQMPE 137
            ++   L++M+ +   LE+A                               Q +FD++P 
Sbjct: 101 LYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPV 160

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQL 194
           ++VVSW  MIS Y +     +ALEL   M++  VRP+  T   VL AC    S+ + RQ+
Sbjct: 161 KDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQV 220

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
           H  I   GF S++ + +ALID+Y+K G++  A  +F  +  +D+V WN++IGG+   +  
Sbjct: 221 HSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLY 280

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI----LNN 310
            EAL L++ M R+G + +  T+ S+L AC  L  +++G  +HV++ K   D+     L  
Sbjct: 281 KEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRT 340

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           +L+DMY KCG +E A  VF+ M+ K + SW+ MI G A +G +     LF  M+ + I+P
Sbjct: 341 SLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEP 400

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           + IT VG+L ACSH+G ++ G + FKSM + Y I P  EHY CMIDLLG +G  +EA ++
Sbjct: 401 DDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEM 460

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
           I  MP EPD V W +LL AC+ H N +LA   A+ ++ ++P++PG+Y+LLSNIYA + +W
Sbjct: 461 IKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEW 520

Query: 491 DEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGV 550
           DEVA+VR  +  +G+ K PGCS IE++ ++H F V D  HP+  +I   L+ +   L   
Sbjct: 521 DEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLEEA 580

Query: 551 GYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFA 610
           G+ PDT+ VLQ++E E KE ++++HSEKLAI FGL+S   G  + I KNLR+C +CH   
Sbjct: 581 GFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEAT 640

Query: 611 KLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KL +K+  + I+ RD  R+HHF+DG CSC D+W
Sbjct: 641 KLVSKIYKREIIARDRTRFHHFRDGVCSCNDFW 673



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 122/418 (29%), Positives = 212/418 (50%), Gaps = 41/418 (9%)

Query: 122 FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
           F     A  +F  + E N + W TM+  Y  +     AL+L + M+  G+ PN +T+  +
Sbjct: 13  FDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFL 72

Query: 182 LRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGEL--------------- 223
           L++C         +Q+H  ++K+G+E D++V ++LI +YA+ G L               
Sbjct: 73  LKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDV 132

Query: 224 ----------------RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
                           R+A+ +F+E+P +D+V WN++I G+A+     EAL L+K M + 
Sbjct: 133 VSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKT 192

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDA 325
               D+ T+ +VL AC     +ELG QVH  +    +  +L + NAL+D+Y KCG +E A
Sbjct: 193 NVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETA 252

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F  +  KDV+SW+T+I G       +EAL LF+ M  S   PN +TIV +L AC+H 
Sbjct: 253 CGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHL 312

Query: 386 GFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           G ++ G W H    KK   +       + +ID+  + G ++ A ++ + M ++    +W 
Sbjct: 313 GAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHK-SLSSWN 371

Query: 445 ALLGACKVH--RNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTM 500
           A++    +H   N    + +  +   ++P D  T++ L +  ++S K D    + K+M
Sbjct: 372 AMIFGFAMHGRANAGFDLFSRMRKNGIEPDDI-TFVGLLSACSHSGKLDLGRHIFKSM 428



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 102/211 (48%), Gaps = 18/211 (8%)

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           A+SVF+ + + + + W+TM+ G A +     ALKL+  M    + PN  T   +L +C+ 
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           +   E+G      + K  G +P    ++ +I +  + G+L++A K+     +  D V++ 
Sbjct: 79  SKAFEEGQQIHGHVLKL-GYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHR-DVVSYT 136

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDP-QDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503
           AL+       N    I +A+++ +  P +D  ++  + + YA +  + E  E+ K M   
Sbjct: 137 ALITGYASSGN----IRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKT 192

Query: 504 GITKEPG--------CSW---IEVNKQIHAF 523
            +  + G        C+    +E+ +Q+H++
Sbjct: 193 NVRPDEGTMVTVLSACAQSRSVELGRQVHSW 223


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 248/640 (38%), Positives = 386/640 (60%), Gaps = 18/640 (2%)

Query: 15  SSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADS 74
           SS+     +++ P     N I  N++ L+      C   +L    +A+H + C       
Sbjct: 26  SSRVPVSFVSLNPSANLINDINSNNNQLIQSL---CKGGNLK---QALHLLCCEP-NPTQ 78

Query: 75  VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ 134
            T+  LI  C  ++++     VH  ++  GF+ + FL   L+NM+ +   ++ A  +FD+
Sbjct: 79  QTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDE 138

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD----SLII 190
             ER +  W  +  A        + L+L I M   G   + FTY+ VL+AC     S+  
Sbjct: 139 TRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCP 198

Query: 191 LR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           LR   ++H  I++ G+E+++ V + L+D+YAK G +  A  VF  MPT++ V W+++I  
Sbjct: 199 LRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIAC 258

Query: 248 FAQNSDVDEALNLYKRM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD 305
           FA+N    +AL L++ M  +      +  T+ ++L+AC GLA LE G  +H ++L+   D
Sbjct: 259 FAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLD 318

Query: 306 LILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            IL   NAL+ MY +CG +     VF  M ++DV+SW+++IS    +G+ ++A+++FE+M
Sbjct: 319 SILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENM 378

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
               + P+YI+ + VL ACSHAG VE+G   F+SM   Y I PG EHY+CM+DLLGRA +
Sbjct: 379 IHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANR 438

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L EA+KLI +M +EP    W +LLG+C++H N +LA  A+  +  L+P++ G Y+LL++I
Sbjct: 439 LGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFELEPRNAGNYVLLADI 498

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           YA ++ W E   V K + ARG+ K PGCSWIEV +++++F   D  +PQI++I+  L  L
Sbjct: 499 YAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKL 558

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
             ++   GY P TN VL DL+ E+KE  +  HSEKLA+ FGL++  +G+TIRIRKNLR+C
Sbjct: 559 SNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTAKGETIRIRKNLRLC 618

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            DCH   K  +K  N+ I++RD  R+HHF+DG CSCGDYW
Sbjct: 619 EDCHAVTKFISKFANREILVRDVNRFHHFRDGVCSCGDYW 658


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/593 (39%), Positives = 353/593 (59%), Gaps = 5/593 (0%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111
           Q     ++K  H M+      +  T   L+        ++  + +H  V   GFE +  +
Sbjct: 393 QGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAV 452

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV 171
            N L+ M++K   + +   L++ M +R+++SW   +S   D  M D+ L +   ML EG 
Sbjct: 453 SNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGF 512

Query: 172 RPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
            PNM+T+ ++L +C  L  +   RQ+H  IIK   + + FV +ALID+YAK   L +A+ 
Sbjct: 513 IPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADV 572

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
            FN +  RDL  W  II  +AQ +  ++ALN +++M++ G   ++ TL   L  C+ LA 
Sbjct: 573 AFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLAS 632

Query: 289 LELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           LE G Q+H  V K  H  D+ + +AL+DMY KCG +E+A ++F  +I++D I+W+T+I G
Sbjct: 633 LEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICG 692

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
            AQNG   +AL  F  M    I P+ +T  G+L ACSH G VE+G  HF SM + +GI P
Sbjct: 693 YAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISP 752

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
             +H +CM+D+LGR GK  E    I +M    +A+ W  +LGA K+H N  L   AA K+
Sbjct: 753 TVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKL 812

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
             L P++  +YILLSNI+A   +WD+V  VR  M ++G+ KEPGCSW+E N Q+H F   
Sbjct: 813 FELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSH 872

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D SHPQI +I+  L  L ++L  + Y P T YVL ++   +K++++++HSE+LA+ F L+
Sbjct: 873 DYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALI 932

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
           S +  K IRI KNLRIC DCH   K  + + NQ IV+RD  R+HHF++G CSC
Sbjct: 933 STSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSC 985



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/378 (30%), Positives = 204/378 (53%), Gaps = 7/378 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y+ +++ C ++ ++  AK +H  ++     P++ L   L+N++ K      A+++  +MP
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQ 193
           +R+VVSWT +I         + ++ L   M  EG+ PN FT +  L+AC    +L + +Q
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H    K+G   D+FV SAL+D+YAK GE+  A  +F  MP ++ V WN ++ G+AQ  D
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNA 311
           V   L L+  M       ++ TLT+VL+ C     L+ G  +H  ++K  Y+ +  +   
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+DMY KCG   DA+ VF  + + D++ WS +I+ L Q G S+E++KLF  M++    PN
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPN 414

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
             TI  +L A ++ G ++ G +    + K YG +      + ++ +  + G + +  KL 
Sbjct: 415 QYTICSLLSAATNTGNLQYGQSIHACVWK-YGFETDVAVSNALVTMYMKNGCVHDGTKLY 473

Query: 432 HEMPYEPDAVTWRALLGA 449
             M  + D ++W A L  
Sbjct: 474 ESM-VDRDLISWNAYLSG 490



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 207/420 (49%), Gaps = 7/420 (1%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D+   +K   +M    V+ +  T   ++K C     +++ +++H+ ++  G+E   F+  
Sbjct: 294 DVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGC 353

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L++M+ K  L  +A  +F  + + ++V W+ +I+       ++++++L   M      P
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLP 413

Query: 174 NMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           N +T  ++L A     +L   + +H  + K GFE+DV V +AL+ +Y K G + +   ++
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLY 473

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
             M  RDL+ WN+ + G       D  L ++  M   GF  +  T  S+L +C+ L  + 
Sbjct: 474 ESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVH 533

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G QVH H++K   D +  +  AL+DMY KC  LEDA   F+R+  +D+ +W+ +I+  A
Sbjct: 534 YGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYA 593

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           Q    ++AL  F  M+   +KPN  T+ G L  CS    +E G     SM    G     
Sbjct: 594 QTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG-QQLHSMVFKSGHVSDM 652

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
              S ++D+  + G ++EA  L  E     D + W  ++     +   + A+ A + +L+
Sbjct: 653 FVGSALVDMYAKCGCMEEAEALF-EALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLD 711



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 166/324 (51%), Gaps = 5/324 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  G+  +  T A  +K C    A++  K +H      G   + F+ + L++++ K   
Sbjct: 204 MQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGE 263

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +E A  +F  MPE+N V+W  +++ Y         L+L   M+   V+ N FT + VL+ 
Sbjct: 264 IELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKG 323

Query: 185 CDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C +   L+Q   +H  IIK G+E + F+   L+D+Y+K G   +A  VF  +   D+VVW
Sbjct: 324 CANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVW 383

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           +++I    Q    +E++ L+  M+      +Q T+ S+L A T    L+ G  +H  V K
Sbjct: 384 SALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWK 443

Query: 302 Y--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
           Y  + D+ ++NAL+ MY K G + D   ++  M+ +D+ISW+  +SGL   G     L +
Sbjct: 444 YGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTI 503

Query: 360 FESMKVSRIKPNYITIVGVLFACS 383
           F  M      PN  T + +L +CS
Sbjct: 504 FYHMLEEGFIPNMYTFISILGSCS 527



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 102/214 (47%), Gaps = 21/214 (9%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           T +       +A+     MQ  GV+ +  T A  +  C +  ++E  + +H+ V   G  
Sbjct: 590 TNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHV 649

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
            + F+ + L++M+ K   +EEA+ LF+ +  R+ ++W T+I  Y      +KAL     M
Sbjct: 650 SDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMM 709

Query: 167 LREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFE------SDVFVR------SALI 214
           L EG+ P+  T++ +L AC         H G+++ G E       D  +       + ++
Sbjct: 710 LDEGISPDGVTFTGILSACS--------HQGLVEEGKEHFNSMYRDFGISPTVDHCACMV 761

Query: 215 DIYAKLGELRNAECVFNEMP-TRDLVVWNSIIGG 247
           DI  ++G+    E    +M  +++ ++W +++G 
Sbjct: 762 DILGRVGKFDELEDFIQKMQLSQNALIWETVLGA 795


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/583 (40%), Positives = 358/583 (61%), Gaps = 8/583 (1%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G   D  T   LI  C     +   K +H+ V+  G   +  +   L++M+ K  L++EA
Sbjct: 257 GYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEA 316

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF---MLREGVRPNMFTYSAVLRAC 185
           + +FD M E NV+SWT +++ Y       +   + +F   +L+ GV PN FT+S VL+AC
Sbjct: 317 RKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKAC 376

Query: 186 DSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
            SL       Q+H   IK+G  +   V + L+ +YAK G + +A   F+ +  ++LV   
Sbjct: 377 ASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSET 436

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK- 301
            +     ++ +++   +L + ++  G      T  S+L     +  +  G Q+H  V+K 
Sbjct: 437 VVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKI 496

Query: 302 -YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
            +  DL +NNAL+ MY KCG+ E A+ VF+ M   +VI+W+++I+G A++G++ +AL+LF
Sbjct: 497 GFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELF 556

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420
            +M  + +KPN +T + VL ACSH G +++ W HF SM+  +GI P  EHY+CM+DLLGR
Sbjct: 557 YNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGR 616

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480
           +G L EA++ I+ MP++ DA+ WR  LG+C+VHRNT L   AAK IL  +P DP TYILL
Sbjct: 617 SGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILL 676

Query: 481 SNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHL 540
           SN+YA   +W++VA +RK M+ + ITKE G SWIEV  Q+H F+V D+ HP+  +I + L
Sbjct: 677 SNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKL 736

Query: 541 KHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNL 600
             L  K+  VGY P+T++VL D+E EQKE  +  HSEKLA+ F L+S    K IR+ KNL
Sbjct: 737 DELALKIKNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFALISTPNPKPIRVFKNL 796

Query: 601 RICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           R+CGDCHT  K  + +  + IV+RD  R+HH +DG CSC DYW
Sbjct: 797 RVCGDCHTAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 196/356 (55%), Gaps = 17/356 (4%)

Query: 45  DFTRFCYQRDLPRAMKAMHAMQCHGVRADS-VTYAELIKCCLARHAVEEAKLVHNHVLSG 103
           +F  F   + L +A+  ++         +  +T + L+K C+        KL+H+ + + 
Sbjct: 22  NFNHFNNPQQLHKAITTLNLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTS 81

Query: 104 GFEPETFLVNILLNMHVKFSLLEEAQVLFDQM--PERNVVSWTTMISAYCDAKMNDKALE 161
               +T L+N L+ ++ K +    A  +F  M   +R+VVS++++IS + + +   KA+E
Sbjct: 82  NLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVE 141

Query: 162 LL-IFMLREGVRPNMFTYSAVLRACDSLIILRQLHC---GIIKVG-FESDVFVRSALIDI 216
           +    +L++GV PN + ++AV+RAC      +   C    ++K G F+S V V   LID+
Sbjct: 142 MFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDM 201

Query: 217 YAK---LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAAD 272
           + K   L +L +A  VF++M  +++V W  +I   AQ    DEA++L+  M   +G+  D
Sbjct: 202 FVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPD 261

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFS 330
           + TLT ++  C  +  L LG ++H  V++     DL +  +L+DMY KCG +++A  VF 
Sbjct: 262 RFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFD 321

Query: 331 RMIQKDVISWSTMISGLAQ--NGYSQEALKLFESMKV-SRIKPNYITIVGVLFACS 383
            M + +V+SW+ +++G  +   GY +EA+++F +M +   + PN  T  GVL AC+
Sbjct: 322 GMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACA 377



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 187/398 (46%), Gaps = 15/398 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI-LLNMHVK---FSL 124
           GV  +   +  +I+ CL     +    +   VL  G+      V   L++M VK    + 
Sbjct: 151 GVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLAD 210

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML-REGVRPNMFTYSAVLR 183
           LE A+ +FD+M E+NVV+WT MI+       ND+A++L + ML   G  P+ FT + ++ 
Sbjct: 211 LESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLIS 270

Query: 184 ACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
            C  +  L   ++LH  +I+ G   D+ V  +L+D+YAK G ++ A  VF+ M   +++ 
Sbjct: 271 VCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMS 330

Query: 241 WNSIIGGFAQNSD--VDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           W +++ G+ +       EA+ ++  M  + G A +  T + VL+AC  L   + G QVH 
Sbjct: 331 WTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHG 390

Query: 298 HVLKYDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
             +K     I  + N L+ +Y K G +E A   F  + +K+++S + +     ++     
Sbjct: 391 QTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNS 450

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
              L   ++      +  T   +L   +  G +  G     +M    G        + +I
Sbjct: 451 EQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKG-EQIHAMVVKIGFRTDLSVNNALI 509

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            +  + G  + A+++ ++M  + + +TW +++     H
Sbjct: 510 SMYSKCGNKEAALQVFNDME-DCNVITWTSIINGFAKH 546



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 152/310 (49%), Gaps = 24/310 (7%)

Query: 158 KALELLIFMLREGVRPN-MFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSAL 213
           KA+  L     E    N + T S +L+ C    +  + + LH  +       D  + ++L
Sbjct: 34  KAITTLNLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSL 93

Query: 214 IDIYAKLGELRNAECVFNEMPT--RDLVVWNSIIGGFAQNSDVDEALNLYKRMK-RAGFA 270
           I +Y+K  +   A  +F  M    RD+V ++SII  FA N +  +A+ ++ ++  + G  
Sbjct: 94  ITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVY 153

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHDLILNNALLDMY---CKCGSLED 324
            ++   T+V+RAC      + G  +   VLK   +D  + +   L+DM+   C    LE 
Sbjct: 154 PNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLES 213

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR-IKPNYITIVGVLFACS 383
           A  VF +M +K+V++W+ MI+ LAQ GY+ EA+ LF  M VS    P+  T+ G++  C+
Sbjct: 214 ARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCA 273

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSC----MIDLLGRAGKLQEAVKLIHEMPYEPD 439
              F+  G    K +  +  I  G     C    ++D+  + G +QEA K+   M  E +
Sbjct: 274 EIQFLSLG----KELHSWV-IRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMR-EHN 327

Query: 440 AVTWRALLGA 449
            ++W AL+  
Sbjct: 328 VMSWTALVNG 337


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/536 (43%), Positives = 348/536 (64%), Gaps = 14/536 (2%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           NI++  + +  LL EA+ LF+++P R+V +WT M+S +    M D+A  +      E   
Sbjct: 250 NIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIF----EEMPE 305

Query: 173 PNMFTYSAVLRA---CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
            N  +++A++        +   R+L   +      S     + ++  YA+ G +  A+ +
Sbjct: 306 KNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSS----WNTMVTGYAQCGNIDQAKIL 361

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F+EMP RD + W ++I G+AQ+   +EAL+L+ +MKR G   ++S L   L +C  +A L
Sbjct: 362 FDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAAL 421

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
           ELG Q+H  ++K  +    I  NALL MY KCGS+E+A  VF  + +KD++SW+TMI+G 
Sbjct: 422 ELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGY 481

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
           A++G+ +EAL LFESMK++ IKP+ +T+VGVL ACSH GFV+ G  +F SM + YGI   
Sbjct: 482 ARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITAN 540

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            +HY+CMIDLLGRAG+L EA+ L+  MP+ PDA TW ALLGA ++H +T+L   AA+K+ 
Sbjct: 541 AKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVF 600

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
            ++P + G Y+LLSN+YA S +W EV E+R  MR +G+ K PG SW+E+  + H F V D
Sbjct: 601 EMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGD 660

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
            SHP+ ++I  +L+ L  +L   G+   T  VL D+E E+KE  ++YHSEKLA+ FG++S
Sbjct: 661 CSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILS 720

Query: 588 LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +  G+ IR+ KNLR+C DCH   K  +K+  + I++RD  R+HHF +G+CSCGDYW
Sbjct: 721 IPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 206/456 (45%), Gaps = 57/456 (12%)

Query: 36  TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGV-----RADSVTYAELIKCCLARHAV 90
           ++NS S + D     + R +   M+         V     R  +VTY  +I   L+ +  
Sbjct: 48  SKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKF 107

Query: 91  EEAKLVHNHVLSGGFEPETFLV--NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           + A+ V   +      P+  L+  N++L+ +VK   L  A+ LF+QMPE++VVSW  M+S
Sbjct: 108 DCARKVFEKM------PDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLS 161

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL-------------RACDS-----LII 190
            +      ++A ++   ML +    N  +++ +L             R  DS     ++ 
Sbjct: 162 GFAQNGFVEEARKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVS 217

Query: 191 LRQLHCGIIKVGFESD---VFVR---------SALIDIYAKLGELRNAECVFNEMPTRDL 238
              L  G ++     D   +F R         + +I  YA+ G L  A  +F E+P RD+
Sbjct: 218 WNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDV 277

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
             W +++ GF QN  +DEA  +++ M      +  + +   +++       EL  Q+   
Sbjct: 278 FAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMP-- 335

Query: 299 VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
                 +    N ++  Y +CG+++ A  +F  M Q+D ISW+ MISG AQ+G S+EAL 
Sbjct: 336 ----SRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALH 391

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDL 417
           LF  MK      N   +   L +C+    +E G   H + +K   G   G    + ++ +
Sbjct: 392 LFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKA--GFQTGYIAGNALLAM 449

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            G+ G ++EA  +  ++  E D V+W  ++     H
Sbjct: 450 YGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARH 484



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 107/258 (41%), Gaps = 32/258 (12%)

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
           +  C    A+E  K +H  ++  GF+      N LL M+ K   +EEA  +F+ + E+++
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471

Query: 141 VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIK 200
           VSW TMI+ Y       +AL L   M +  ++P+  T   VL AC         H G + 
Sbjct: 472 VSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACS--------HTGFVD 522

Query: 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNL 260
            G E           +Y   G   NA+             +  +I    +   +DEALNL
Sbjct: 523 KGME-------YFNSMYQNYGITANAKH------------YTCMIDLLGRAGRLDEALNL 563

Query: 261 YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALL-DMYCKC 319
            K M    F  D +T  ++L A       ELG +    V + + D      LL ++Y   
Sbjct: 564 MKSMP---FYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAAS 620

Query: 320 GSLEDAMSVFSRMIQKDV 337
           G   +   + S+M  K V
Sbjct: 621 GRWREVREMRSKMRDKGV 638


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 261/660 (39%), Positives = 380/660 (57%), Gaps = 48/660 (7%)

Query: 21  FSLTITPPVASCNTITRN-SSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAE 79
           F+L   P    CN   R  S S   + T   Y+R           M+  G+  D  ++  
Sbjct: 79  FNLIPKPETHLCNRFLRELSRSEEPEKTLLVYER-----------MRTQGLAVDRFSFPP 127

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139
           L+K      ++ E   +H      GF+ + F+   L+ M+     + EA+++FD+M  R+
Sbjct: 128 LLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRD 187

Query: 140 VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHC 196
           VV+W+ MI  YC + + + AL L   M    V P+    S VL AC    +L   + +H 
Sbjct: 188 VVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHD 247

Query: 197 GIIKVGFESDVFVRSALIDIYA-------------------------------KLGELRN 225
            I++     D  ++SAL+ +YA                               KLG++ N
Sbjct: 248 FIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIEN 307

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VFN+M  +DLV W+++I G+A++    EALNL+  M+  G   DQ T+ SV+ AC  
Sbjct: 308 ARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAH 367

Query: 286 LALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L  L+    +H+ V K  +   L +NNAL++MY KCGSLE A  +F +M +K+VISW+ M
Sbjct: 368 LGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCM 427

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           IS  A +G +  AL+ F  M+   I+PN IT VGVL+ACSHAG VE+G   F SM   + 
Sbjct: 428 ISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHN 487

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           I P   HY CM+DL GRA  L+EA++L+  MP  P+ + W +L+ AC+VH   +L   AA
Sbjct: 488 ITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAA 547

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
           K++L LDP   G ++ LSNIYA +++W++V +VRK M+ +GI+KE GCS  E+N +IH F
Sbjct: 548 KRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEF 607

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
            VAD SH   D+I + L  ++ KL  VGY+P+T  +L DLE E+K++ + +HSEKLA+ +
Sbjct: 608 LVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCY 667

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GLM    G  IRI KNLR+C DCHTF KL +K+  + IV+RD  R+HH++DG CSC DYW
Sbjct: 668 GLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 160/337 (47%), Gaps = 12/337 (3%)

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFE-SDVFVRSALIDIYAKLGELRNAECVFNEMPT 235
           T  + L +  SL  L+Q+H  I++   + S   +   +I   A    L  A  VFN +P 
Sbjct: 25  TLFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPK 84

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
            +  + N  +   +++ + ++ L +Y+RM+  G A D+ +   +L+A + +  L  G ++
Sbjct: 85  PETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEI 144

Query: 296 H--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H     L +D D  +   L+ MY  CG + +A  +F +M  +DV++WS MI G  Q+G  
Sbjct: 145 HGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLF 204

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYS 412
            +AL LFE MK   ++P+ + +  VL AC  AG +  G   H   M+    +DP  +  S
Sbjct: 205 NDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQ--S 262

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN-LDP 471
            ++ +    G +  A+ L  +M  +    +   + G  K+ +     I  A+ + N +  
Sbjct: 263 ALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQ-----IENARSVFNQMVK 317

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
           +D   +  + + YA S    E   +   M++ GI  +
Sbjct: 318 KDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPD 354


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 261/641 (40%), Positives = 384/641 (59%), Gaps = 27/641 (4%)

Query: 18  ARQ-FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVT 76
           ARQ F     P   S NT+           + +   R+   AM     M+  G   D  T
Sbjct: 93  ARQLFDENPQPDTVSYNTL----------ISGYADARETVAAMVLFKRMRELGFEVDGFT 142

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
            + LI  C  R  V+  K +H   +SGGF+  + + N  +  + K  LL EA  +F  M 
Sbjct: 143 LSGLIAACCDR--VDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMD 200

Query: 137 E-RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILR 192
             R+ VSW +MI AY   K   KAL L   M+ +G + +MFT ++VL A    D LI  R
Sbjct: 201 GLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGR 260

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGE---LRNAECVFNEMPTRDLVVWNSIIGGFA 249
           Q H  +IK GF  +  V S LID Y+K G    + ++E VF E+ + DLV+WN++I G++
Sbjct: 261 QFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYS 320

Query: 250 QNSD-VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD---HD 305
            N +  +EA+  +++M+R G   D  +   V  AC+ L+    G Q+H   +K +   + 
Sbjct: 321 MNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNR 380

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           + +NNAL+ +Y K G+L DA  VF RM + + +S++ MI G AQ+G+  EAL+L++ M  
Sbjct: 381 ISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLD 440

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
           S I PN IT V +L AC+H G V++G  +F +MK+ + I+P  EHYSCMIDLLGRAGKL+
Sbjct: 441 SGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLE 500

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           EA + I  MPY+P +V W ALLGAC+ H+N  LA  AAK+++ + P     Y++L+N+YA
Sbjct: 501 EAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYA 560

Query: 486 NSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQ 545
           ++ KW+E+A VRK+MR + I K+PGCSWIEV K+ H F   D SHP I ++N++L+ +++
Sbjct: 561 DAGKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMK 620

Query: 546 KLVGVGYAPDTNYVLQDLEGEQKEDS---IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
           K+  VGY  D  + +   +   + +    + +HSEKLA+ FGLMS   G+ I + KNLRI
Sbjct: 621 KMKKVGYVMDKKWAMVKEDEAGEGEEEMRLGHHSEKLAVAFGLMSTRDGEEIVVVKNLRI 680

Query: 603 CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           CGDCH   K  + +  + I++RD +R+H F+DG CSCGDYW
Sbjct: 681 CGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 149/481 (30%), Positives = 240/481 (49%), Gaps = 36/481 (7%)

Query: 41  SLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELI-----KC-CL--ARHAVEE 92
           S  D   +   +RDL    K++HA+    + A S   +        KC CL  AR A + 
Sbjct: 10  SFRDLLLKSVAERDLFTG-KSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDS 68

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
            +           EP  F  N+++  + K S +  A+ LFD+ P+ + VS+ T+IS Y D
Sbjct: 69  TE-----------EPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYAD 117

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRA-CDSLIILRQLHCGIIKVGFESDVFVRS 211
           A+    A+ L   M   G   + FT S ++ A CD + +++QLHC  +  GF+S   V +
Sbjct: 118 ARETVAAMVLFKRMRELGFEVDGFTLSGLIAACCDRVDLIKQLHCFAVSGGFDSYSSVNN 177

Query: 212 ALIDIYAKLGELRNAECVFNEMPT-RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
           A +  Y+K G LR A  VF  M   RD V WNS+I  + Q+ +  +AL LYK M   GF 
Sbjct: 178 AFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFK 237

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCG---SLEDA 325
            D  TL SVL A T L  L  G Q H  ++K  +  +  + + L+D Y KCG    + D+
Sbjct: 238 IDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDS 297

Query: 326 MSVFSRMIQKDVISWSTMISGLAQN-GYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
             VF  ++  D++ W+TMISG + N  +S+EA+K F  M+    +P+  + V V  ACS+
Sbjct: 298 EKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSN 357

Query: 385 AGFVEDGWN-HFKSMKKFYGIDPGR-EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
                 G   H  ++K    I   R    + +I L  ++G L +A ++   MP E +AV+
Sbjct: 358 LSSPSQGKQIHGLAIKS--NIPSNRISVNNALISLYYKSGNLLDARRVFDRMP-ELNAVS 414

Query: 443 WRALLGACKVHRNTDLAICAAKKILN--LDPQDPGTYILLSNIYANSQKWDEVAEVRKTM 500
           +  ++     H +   A+   +++L+  + P +  T++ + +  A+  K DE  +   TM
Sbjct: 415 FNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNI-TFVAILSACAHCGKVDEGQKYFNTM 473

Query: 501 R 501
           +
Sbjct: 474 K 474


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/606 (39%), Positives = 371/606 (61%), Gaps = 38/606 (6%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           +Y   +K C    A   AK +H  ++  G      L N LL+ + K +LL++A  LFD+M
Sbjct: 4   SYLHRLKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEM 63

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLR-EGVRPNMFTYSAVLRACDSLIILR-- 192
           P+R+ VSW ++++AY  AK+ +K L +  +M   + ++P+ F Y+ +L+AC SL  LR  
Sbjct: 64  PQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLG 123

Query: 193 -QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
            Q+H   +   F  D  V+S+L+D+YAK G    A  VF+ +  +  V W +++ G+A++
Sbjct: 124 KQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARS 183

Query: 252 SDVDEALNLYKR-------------------------------MKRAGF-AADQSTLTSV 279
              DEA+ L+ R                               M+R G    D   L+SV
Sbjct: 184 GLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSV 243

Query: 280 LRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
           + AC  LA+L LG Q+H  V+   Y+  L ++NAL+DMY KC  +  A +VF+RM+ +DV
Sbjct: 244 VGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDV 303

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           +SW+++I G AQ+G ++EAL L++ M ++ IKPN +T VG+++ACSHAG V  G   FK+
Sbjct: 304 VSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKA 363

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457
           M + Y I P  + ++C +DLL R+G L EA  LI  MP++PD  TW ALL ACK H NT+
Sbjct: 364 MIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTE 423

Query: 458 LAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVN 517
           + +  A ++L+L+  +P TY+LLSN+YA + KW++++ VRK M    + ++PG S I++ 
Sbjct: 424 MGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLG 483

Query: 518 KQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSE 577
           K+   F+  ++ HP  D+I   LK L  ++   GY PDT+YVL D+E ++KE  + +HSE
Sbjct: 484 KESQVFHAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHSE 543

Query: 578 KLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNC 637
           + A+ +GL+    G  IRI KNLRICGDCHTF KLT+ + ++ I++RD  RYHHF+DG C
Sbjct: 544 RWAVAYGLLKAVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRC 603

Query: 638 SCGDYW 643
           SC D+W
Sbjct: 604 SCNDFW 609



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 161/333 (48%), Gaps = 39/333 (11%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           ++ D   YA L+K C +  ++   K VH   +   F  +  + + L++M+ K  L   A+
Sbjct: 100 LQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIAR 159

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALEL--------------------------- 162
            +FD +  +  VSWT M+S Y  + + D+A+EL                           
Sbjct: 160 SVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCID 219

Query: 163 ----LIFMLREGVR-PNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALI 214
                I M REGV   +    S+V+ AC +L +L   +Q+H  +I  G+ES +F+ +AL+
Sbjct: 220 GCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALV 279

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           D+YAK  ++  A  VFN M  RD+V W SII G AQ+    EAL+LY +M  A    ++ 
Sbjct: 280 DMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEV 339

Query: 275 TLTSVLRACTGLALLELGTQVH---VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
           T   ++ AC+   L+  G ++    +   +    L L    LD+  + G L +A  +   
Sbjct: 340 TFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKT 399

Query: 332 MIQK-DVISWSTMISGLAQNGYSQEALKLFESM 363
           M  K D  +W+ ++S    +G ++  +++ + +
Sbjct: 400 MPHKPDEPTWAALLSACKHHGNTEMGVRIADRL 432


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/536 (43%), Positives = 334/536 (62%), Gaps = 5/536 (0%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           NIL+N HV+   L+ A  +FD+M ERNV +W  M+S     + N+  L L   M   G  
Sbjct: 27  NILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFL 86

Query: 173 PNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P+ FT  +VLR C  L      +Q+H  ++K G+E ++ V S+L  +Y K G L   E V
Sbjct: 87  PDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKV 146

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
              M  R++V WN++I G AQN   +  L+LY  MK +G   D+ TL SV+ +   LA L
Sbjct: 147 IKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATL 206

Query: 290 ELGTQVHVHVLKYDHD--LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
             G Q+H   +K   +  + + ++L+ MY KCG LED+M         D + WS+MI+  
Sbjct: 207 FQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAY 266

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
             +G  +EA+ LFE M+   +  N +T + +L+ACSH G  E G   FK M + YG+ P 
Sbjct: 267 GFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPR 326

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            EHY+C++DLLGR+G L EA  +I  MP E D V W+ LL AC++HRN D+A   A++IL
Sbjct: 327 LEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEIL 386

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
            L+PQD  TY+LLSNI+A++++W +V++VR TMR R + KEPG SW+EV  ++  F++ D
Sbjct: 387 RLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGD 446

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
            SHP  ++I+ +LK L++++   GY PDT  V  D + E+KE+S+  HSEKLAI FGLM+
Sbjct: 447 KSHPMSEEIDLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIAFGLMN 506

Query: 588 LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +  G  IR+ KNLRIC DCH   KL + + N+ I++RD  R+HHF+ G CSCGDYW
Sbjct: 507 IPPGSPIRVMKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGDYW 562



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 147/258 (56%), Gaps = 6/258 (2%)

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           ++   + LI+ + + G+L +A  VF+EM  R++  WN+++ G  Q    +  L L++ M 
Sbjct: 22  NIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMH 81

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD--LILNNALLDMYCKCGSLE 323
             GF  D+ TL SVLR C GL     G QVH +VLKY ++  L++ ++L  MY K GSL 
Sbjct: 82  ELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLG 141

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
           +   V   M  ++V++W+T+I+G AQNG+ +  L L+  MK+S ++P+ IT+V V+ + +
Sbjct: 142 EGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSA 201

Query: 384 HAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
               +  G   H +++K   G +      S +I +  + G L++++K + +  + PD+V 
Sbjct: 202 ELATLFQGQQIHAEAIKA--GANSAVAVLSSLISMYSKCGCLEDSMKALLDCEH-PDSVL 258

Query: 443 WRALLGACKVHRNTDLAI 460
           W +++ A   H   + A+
Sbjct: 259 WSSMIAAYGFHGRGEEAV 276



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 155/313 (49%), Gaps = 10/313 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++    +F +  +     + MH +   G   D  T   +++ C    A    K VH +
Sbjct: 58  NAMVSGLIQFEFNENGLFLFREMHEL---GFLPDEFTLGSVLRGCAGLRASYAGKQVHAY 114

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           VL  G+E    + + L +M++K   L E + +   M  RNVV+W T+I+        +  
Sbjct: 115 VLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGV 174

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDI 216
           L+L   M   G+RP+  T  +V+ +   L  L   +Q+H   IK G  S V V S+LI +
Sbjct: 175 LDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISM 234

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           Y+K G L ++     +    D V+W+S+I  +  +   +EA++L+++M++ G   +  T 
Sbjct: 235 YSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTF 294

Query: 277 TSVLRACTGLALLELGTQ-VHVHVLKYDHDLILNN--ALLDMYCKCGSLEDAMSVFSRM- 332
            S+L AC+   L E G     + V KY     L +   ++D+  + G L++A ++   M 
Sbjct: 295 LSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMP 354

Query: 333 IQKDVISWSTMIS 345
           ++ DV+ W T++S
Sbjct: 355 LEADVVIWKTLLS 367



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 43/171 (25%)

Query: 315 MYCKCGSLEDAMS-------------------------------VFSRMIQKDVISWSTM 343
           MY K G +++A++                               VF  M++++V +W+ M
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAM 60

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC-----SHAGFVEDGWNHFKSM 398
           +SGL Q  +++  L LF  M      P+  T+  VL  C     S+AG       H   +
Sbjct: 61  VSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAG----KQVHAYVL 116

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           K  YG +      S +  +  ++G L E  K+I  M    + V W  L+  
Sbjct: 117 K--YGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIR-NVVAWNTLIAG 164


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/594 (39%), Positives = 366/594 (61%), Gaps = 7/594 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           R  +A+  M   G       Y  L+  CL + A+ + + VH H++   + P T+L   LL
Sbjct: 35  RLQEALLEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLL 94

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
             + K   LE+A+ + D+MPE+NVVSWT MIS Y     + +AL +   M+R   +PN F
Sbjct: 95  IFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEF 154

Query: 177 TYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T++ VL +C     L + +Q+H  I+K  ++S +FV S+L+D+YAK G+++ A  +F  +
Sbjct: 155 TFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECL 214

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           P RD+V   +II G+AQ    +EAL ++ R+   G + +  T  S+L A +GLALL+ G 
Sbjct: 215 PERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGK 274

Query: 294 QVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q H HVL+ +     +L N+L+DMY KCG+L  A  +F  M ++  ISW+ M+ G +++G
Sbjct: 275 QAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHG 334

Query: 352 YSQEALKLFESMK-VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM-KKFYGIDPGRE 409
             +E L+LF  M+   R+KP+ +T++ VL  CSH    + G N F  M    YG  PG E
Sbjct: 335 LGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTE 394

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
           HY C++D+LGRAG++ EA + I  MP +P A    +LLGAC+VH + D+     ++++ +
Sbjct: 395 HYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEI 454

Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
           +P++ G Y++LSN+YA++ +W +V  VR  M  + +TKEPG SWI+  + +H F+  D +
Sbjct: 455 EPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRT 514

Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
           HP+ +++   +K +  K+   GY PD + VL D++ EQKE  +  HSEKLA+ FGL++  
Sbjct: 515 HPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATG 574

Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +G  IR+ KNLRIC DCH FAK+ +K+  + + +RD  R+H   DG CSCGDYW
Sbjct: 575 EGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 234/650 (36%), Positives = 382/650 (58%), Gaps = 41/650 (6%)

Query: 35   ITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCH-GVRADSVTYAELIKCCLARHAVEEA 93
            + RN  S       +  +     A++  H MQ   G++ D  T+  L+  C  +    + 
Sbjct: 439  LERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQG 498

Query: 94   KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
            + +H H++         +   L++M+ +   L  A+ +F++M ERN  SW +MI  Y   
Sbjct: 499  RQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQN 558

Query: 154  KMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVR 210
                +AL L   M   G++P+ F+ S++L +C SL      R+LH  I++   E +  ++
Sbjct: 559  GETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQ 618

Query: 211  SALIDIYAKLGEL-------------------------------RNAECVFNEMPTRDLV 239
              L+D+YAK G +                                +A+ +F++M  R+  
Sbjct: 619  VVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTA 678

Query: 240  VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
            +WNSI+ G+A      E+ N +  M  +    D  T+ +++  C+ L  LE G Q+H  +
Sbjct: 679  LWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLI 738

Query: 300  LK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
            +K    +  ++L  AL+DMY KCG++  A +VF  M  K+++SW+ MISG +++G S+EA
Sbjct: 739  IKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEA 798

Query: 357  LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
            L L+E M    + PN +T + +L ACSH G VE+G   F SM++ Y I+   EHY+CM+D
Sbjct: 799  LILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVD 858

Query: 417  LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476
            LLGRAG+L++A + + +MP EP+  TW ALLGAC+VH++ D+   AA+++  LDPQ+PG 
Sbjct: 859  LLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGP 918

Query: 477  YILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKI 536
            Y+++SNIYA + +W EV ++R+ M+ +G+ K+PG SWIE+N +I  F+    +HP+ ++I
Sbjct: 919  YVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEI 978

Query: 537  NKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQY---HSEKLAIVFGLMSLTQGKT 593
              +L+HL  +  G+GY PDT+++LQ+++  ++E+  +Y   HSE+LA+  GL+SL +  T
Sbjct: 979  YNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKST 1038

Query: 594  IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            IR+ KNLRICGDCHT  K  +K+  + I+ RD  R+HHF++G CSCGDYW
Sbjct: 1039 IRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 125/434 (28%), Positives = 217/434 (50%), Gaps = 56/434 (12%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE---AQ 129
           + + Y+ LI+ C+  ++ +  K +H  ++S G+ P+ +L+  +L ++ +   L++   A+
Sbjct: 70  NPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYAR 129

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMND--KALELLIFMLREGVRPNMFTYSAVLRAC-- 185
            LF++MPERN+ +W TMI AY  A+++D  + L L   M   G   + FT+ +V++AC  
Sbjct: 130 KLFEEMPERNLTAWNTMILAY--ARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIA 187

Query: 186 -DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
            + +  +RQL   ++K G   ++FV  AL+D YA+ G + +A    +E+    +V WN++
Sbjct: 188 MEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAV 247

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           I G+ +    +EA  ++ RM + G   D  T  S LR C  L   + G QVH  ++   +
Sbjct: 248 IAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGF 307

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
             D  + NAL+DMY KC   E  + VF  M +++ ++W+++IS  AQ G+  +AL LF  
Sbjct: 308 KGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLR 367

Query: 363 MKVSRIKPNYITIVGVLFAC-----------------------------------SHAGF 387
           M+ S  K N   +  +L A                                    S  G 
Sbjct: 368 MQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGM 427

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE----PDAVTW 443
           VE+    F+S+     ++     Y+ ++    + GK +EA++L H+M  E    PD  T+
Sbjct: 428 VEEAHQVFRSL-----LERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTF 482

Query: 444 RALLGACKVHRNTD 457
             LL  C   RN +
Sbjct: 483 TTLLTLCANQRNDN 496



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/465 (28%), Positives = 246/465 (52%), Gaps = 16/465 (3%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D    ++    M+  G  +D  T+  +IK C+A   +   + + + V+  G     F+  
Sbjct: 155 DYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGG 214

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L++ + +F  +++A    D++   +VV+W  +I+ Y      ++A  +   ML+ GV P
Sbjct: 215 ALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCP 274

Query: 174 NMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           + FT+++ LR C +L      +Q+H  +I  GF+ D FV +ALID+YAK  +  +   VF
Sbjct: 275 DNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVF 334

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           +EM  R+ V WNSII   AQ    ++AL L+ RM+ +G+ +++  L S+L A  GLA + 
Sbjct: 335 DEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIG 394

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G ++H H+++   + D+IL +AL+DMY KCG +E+A  VF  +++++ +S++ +++G  
Sbjct: 395 KGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYV 454

Query: 349 QNGYSQEALKLFESMKVSR-IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
           Q G ++EAL+L+  M+    I+P+  T   +L  C++      G      + +   I   
Sbjct: 455 QEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIR-ANITKN 513

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
               + ++ +    G+L  A ++ + M  E +A +W +++   + +  T  A+   K+ +
Sbjct: 514 IIVETELVHMYSECGRLNYAKEIFNRMA-ERNAYSWNSMIEGYQQNGETQEALRLFKQ-M 571

Query: 468 NLDPQDPGTYILLSNI-----YANSQKWDEVAE--VRKTMRARGI 505
            L+   P  + L S +      ++SQK  E+    VR TM   GI
Sbjct: 572 QLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGI 616


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/536 (42%), Positives = 347/536 (64%), Gaps = 14/536 (2%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           NI++  + +  LL EA+ LF+++P R+V +WT M+S +    M D+A  +      E   
Sbjct: 250 NIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIF----EEMPE 305

Query: 173 PNMFTYSAVLRA---CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
            N  +++A++        +   R+L   +      S     + ++  YA+ G +  A+ +
Sbjct: 306 KNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSS----WNTMVTGYAQCGNIDQAKIL 361

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F+EMP RD + W ++I G+AQ+   +EAL+L+ +MKR G   ++S L   L +C  +A L
Sbjct: 362 FDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAAL 421

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
           ELG Q+H  ++K  +    I  NALL MY KCGS+E+A  VF  + +KD++SW+TMI+G 
Sbjct: 422 ELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGY 481

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
           A++G+ +EAL LFESMK++ IKP+ +T+VGVL ACSH G V+ G  +F SM + YGI   
Sbjct: 482 ARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITAN 540

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            +HY+CMIDLLGRAG+L EA+ L+  MP+ PDA TW ALLGA ++H +T+L   AA+K+ 
Sbjct: 541 AKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVF 600

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
            ++P + G Y+LLSN+YA S +W EV E+R  MR +G+ K PG SW+E+  + H F V D
Sbjct: 601 EMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGD 660

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
            SHP+ ++I  +L+ L  +L   G+   T  VL D+E E+KE  ++YHSEKLA+ FG++S
Sbjct: 661 CSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILS 720

Query: 588 LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +  G+ IR+ KNLR+C DCH   K  +K+  + I++RD  R+HHF +G+CSCGDYW
Sbjct: 721 IPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 206/456 (45%), Gaps = 57/456 (12%)

Query: 36  TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGV-----RADSVTYAELIKCCLARHAV 90
           ++NS S + D     + R +   M+         V     R  +VTY  +I   L+ +  
Sbjct: 48  SKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKF 107

Query: 91  EEAKLVHNHVLSGGFEPETFLV--NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           + A+ V   +      P+  L+  N++L+ +VK   L  A+ LF+QMPE++VVSW  M+S
Sbjct: 108 DCARKVFEKM------PDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLS 161

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL-------------RACDS-----LII 190
            +      ++A ++   ML +    N  +++ +L             R  DS     ++ 
Sbjct: 162 GFAQNGFVEEARKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVS 217

Query: 191 LRQLHCGIIKVGFESD---VFVR---------SALIDIYAKLGELRNAECVFNEMPTRDL 238
              L  G ++     D   +F R         + +I  YA+ G L  A  +F E+P RD+
Sbjct: 218 WNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDV 277

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
             W +++ GF QN  +DEA  +++ M      +  + +   +++       EL  Q+   
Sbjct: 278 FAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMP-- 335

Query: 299 VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
                 +    N ++  Y +CG+++ A  +F  M Q+D ISW+ MISG AQ+G S+EAL 
Sbjct: 336 ----SRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALH 391

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDL 417
           LF  MK      N   +   L +C+    +E G   H + +K   G   G    + ++ +
Sbjct: 392 LFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKA--GFQTGYIAGNALLAM 449

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            G+ G ++EA  +  ++  E D V+W  ++     H
Sbjct: 450 YGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARH 484



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 108/258 (41%), Gaps = 32/258 (12%)

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
           +  C    A+E  K +H  ++  GF+      N LL M+ K   +EEA  +F+ + E+++
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471

Query: 141 VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIK 200
           VSW TMI+ Y       +AL L   M +  ++P+  T   VL AC         H G++ 
Sbjct: 472 VSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACS--------HTGLVD 522

Query: 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNL 260
            G E           +Y   G   NA+             +  +I    +   +DEALNL
Sbjct: 523 KGME-------YFNSMYQNYGITANAKH------------YTCMIDLLGRAGRLDEALNL 563

Query: 261 YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALL-DMYCKC 319
            K M    F  D +T  ++L A       ELG +    V + + D      LL ++Y   
Sbjct: 564 MKSMP---FYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAAS 620

Query: 320 GSLEDAMSVFSRMIQKDV 337
           G   +   + S+M  K V
Sbjct: 621 GRWREVREMRSKMRDKGV 638


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/638 (37%), Positives = 376/638 (58%), Gaps = 8/638 (1%)

Query: 13  KPSSQARQFSLTITPPVASCNTITRN-SSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVR 71
           +P  +     L +        T  R  SS L     +  + +    A++    ++ +G  
Sbjct: 68  RPKPKPSTIELNVGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELFEILELNGAY 127

Query: 72  -ADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
             DS TY  L+  C+   ++   K V N++++ G +P+ +L N +L MHVK  ++ +A+ 
Sbjct: 128 DMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARR 187

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           LFD+MPE+N++SW T+I    DA    +A  L + M ++        +  ++RA   L +
Sbjct: 188 LFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGL 247

Query: 191 L---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           +   RQLH   +K G   DVFV  ALID+Y+K G + +A+CVF++MP +  V WNSII G
Sbjct: 248 IFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAG 307

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--D 305
           +A +   +EAL++Y  M+ +G   D  T + ++R C  LA LE   Q H  ++++    D
Sbjct: 308 YALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLD 367

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           ++ N AL+D+Y K G +EDA  VF  M  K+VISW+ +I+G   +G   EA+++FE M  
Sbjct: 368 IVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLH 427

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
             + PN++T + VL ACS++G  + GW  F+SM + + I P   HY+CMI+LLGR G L 
Sbjct: 428 EGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLD 487

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           EA  LI + P++P    W ALL AC+VH+N +L   AA+K+  + P+    Y++L NIY 
Sbjct: 488 EAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYN 547

Query: 486 NSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQ 545
            S + +E A V +T++ RG+   P CSWIE+ KQ + F   D  H Q  +I + L  L+ 
Sbjct: 548 RSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELML 607

Query: 546 KLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGD 605
           ++   GY P   ++L D++ EQ+E  + YHSEKLAI FGL++ +    ++I ++ RICGD
Sbjct: 608 EISKHGYVPQDKFLLPDVD-EQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRICGD 666

Query: 606 CHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           CH+  KL A +  + IV+RD  R+HHF+DG+CSCGDYW
Sbjct: 667 CHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/526 (44%), Positives = 338/526 (64%), Gaps = 5/526 (0%)

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
           S +  A  +F Q+   N+ +W TMI  Y +++    ALEL   M    + P+  TY  +L
Sbjct: 88  SPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLL 147

Query: 183 RACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
           +A   L+ +R+   +H   I+ GFES VFV++ L+ +YA  G   +A  +F  M  R+LV
Sbjct: 148 KAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLV 207

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
            WNS+I G+A N   +EAL L++ M   G   D  T+ S+L AC  L  L LG + HV++
Sbjct: 208 TWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYM 267

Query: 300 LK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           +K   D +L   NALLD+Y KCGS+  A  VF  M +K V+SW+++I GLA NG+ +EAL
Sbjct: 268 VKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEAL 327

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
           +LF+ ++   + P+ IT VGVL+ACSH G V++G+++FK MK+ YGI P  EHY CM+DL
Sbjct: 328 ELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDL 387

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           LGRAG +++A + I  MP +P+AV WR LLGAC +H +  L   A  ++L L+P+  G Y
Sbjct: 388 LGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDY 447

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           +LLSN+YA+ Q+W +V +VR+TM   G+ K PG S +E+  ++H F + D SHPQ ++I 
Sbjct: 448 VLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIY 507

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
             L  + + L   GY P  + VL D+E E+KE ++ YHSEK+AI F L++   G  IR+ 
Sbjct: 508 VKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRVV 567

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLR+C DCH   KL +K+ ++ IV+RD  R+HHF+DG+CSC DYW
Sbjct: 568 KNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 174/353 (49%), Gaps = 20/353 (5%)

Query: 9   LKWTKPSSQARQ-FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQC 67
           L +  P S A Q FS    P + + NT+ R  +           +  +P A++    M  
Sbjct: 84  LSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAE---------SENPMP-ALELYRQMHV 133

Query: 68  HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
             +  D+ TY  L+K       V E + VH+  +  GFE   F+ N L++M+      E 
Sbjct: 134 SCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAES 193

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A  LF+ M ERN+V+W ++I+ Y      ++AL L   M   GV P+ FT  ++L AC  
Sbjct: 194 AHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAE 253

Query: 188 LIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L  L   R+ H  ++KVG + ++   +AL+D+YAK G +R A  VF+EM  + +V W S+
Sbjct: 254 LGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSL 313

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
           I G A N    EAL L+K ++R G    + T   VL AC+   +++ G   +   +K ++
Sbjct: 314 IVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFD-YFKRMKEEY 372

Query: 305 DLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGY 352
            ++        ++D+  + G ++ A      M +Q + + W T++     +G+
Sbjct: 373 GIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGH 425



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 91/220 (41%), Gaps = 42/220 (19%)

Query: 273 QSTLTSVLRACTGLALLELGTQV---HVHVLKYDHDLILNNALLDMY------CKCGSLE 323
           +S  + +L+ C  L L    ++     +H     H + L N  +  Y        C  + 
Sbjct: 32  ESPKSYILKKCIALLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMS 91

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
            A  +FS++   ++ +W+TMI G A++     AL+L+  M VS I+P+  T   +L A +
Sbjct: 92  YAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIA 151

Query: 384 -----------HAGFVEDGW-----------------NHFKSMKKFYGIDPGRE--HYSC 413
                      H+  + +G+                  H +S  K + +   R    ++ 
Sbjct: 152 KLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNS 211

Query: 414 MIDLLGRAGKLQEAVKLIHEMPY---EPDAVTWRALLGAC 450
           +I+     G+  EA+ L  EM     EPD  T  +LL AC
Sbjct: 212 VINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSAC 251


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 239/591 (40%), Positives = 365/591 (61%), Gaps = 6/591 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+   ++M+ + VR    ++A +IK C     +   + +H  V+  GF  +  +   L+ 
Sbjct: 279 ALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMV 338

Query: 118 MHVKFSLLEEAQVLFDQMP-ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
            + K + + +A  LF ++    NVVSWT MIS +      ++A++L   M R+GVRPN F
Sbjct: 339 AYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEF 398

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           TYS +L A   +I   ++H  ++K  +E    V +AL+D Y KLG++  A  VF+ +  +
Sbjct: 399 TYSVILTAL-PVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDK 457

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL-ALLELGTQV 295
           D+V W++++ G+AQ  + + A+ ++  + + G   ++ T +S+L  C    A +  G Q 
Sbjct: 458 DIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQF 517

Query: 296 HVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H   +K   D  L +++ALL MY K G++E A  VF R  +KD++SW++MISG AQ+G +
Sbjct: 518 HGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQA 577

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
            +AL +F+ MK  ++K + +T +GV  AC+HAG VE+G  +F  M +   I P +EH SC
Sbjct: 578 MKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSC 637

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           M+DL  RAG+L++A+K+I  MP    +  WR +L AC+VH+ T+L   AA+KI+ + P+D
Sbjct: 638 MVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPED 697

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQI 533
              Y+LLSN+YA S  W E A+VRK M  R + KEPG SWIEV  + ++F   D SHP  
Sbjct: 698 SAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLK 757

Query: 534 DKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT 593
           D+I   L+ L  +L  +GY PDT+YVLQD++ E KE  +  HSE+LAI FGL++  +G  
Sbjct: 758 DQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSP 817

Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF-QDGNCSCGDYW 643
           + I KNLR+CGDCH   KL AK+E + IV+RD  R+HHF  DG CSCGD+W
Sbjct: 818 LLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/426 (29%), Positives = 216/426 (50%), Gaps = 15/426 (3%)

Query: 41  SLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHV 100
           SLL  F+R    ++  R    +H +   G+  D   ++ ++K           + +H   
Sbjct: 63  SLLFGFSRDGRTQEAKRLFLNIHRL---GMEMDCSIFSSVLKVSATLCDELFGRQLHCQC 119

Query: 101 LSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKAL 160
           +  GF  +  +   L++ ++K S  ++ + +FD+M ERNVV+WTT+IS Y    MND+ L
Sbjct: 120 IKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVL 179

Query: 161 ELLIFMLREGVRPNMFTYSAVLRA-CDSLIILR--QLHCGIIKVGFESDVFVRSALIDIY 217
            L + M  EG +PN FT++A L    +  +  R  Q+H  ++K G +  + V ++LI++Y
Sbjct: 180 TLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLY 239

Query: 218 AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT 277
            K G +R A  +F++   + +V WNS+I G+A N    EAL ++  M+       +S+  
Sbjct: 240 LKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFA 299

Query: 278 SVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRM-IQ 334
           SV++ C  L  L    Q+H  V+KY    D  +  AL+  Y KC ++ DA+ +F  +   
Sbjct: 300 SVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCV 359

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
            +V+SW+ MISG  QN   +EA+ LF  MK   ++PN  T   +L A      +     H
Sbjct: 360 GNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALP---VISPSEVH 416

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR 454
            + +K  Y  +      + ++D   + GK++EA K+   +  + D V W A+L       
Sbjct: 417 AQVVKTNY--ERSSTVGTALLDAYVKLGKVEEAAKVFSGID-DKDIVAWSAMLAGYAQTG 473

Query: 455 NTDLAI 460
            T+ AI
Sbjct: 474 ETEAAI 479



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 176/339 (51%), Gaps = 14/339 (4%)

Query: 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
           V  S L  A  LFD+ P R+  S+ +++  +       +A  L + + R G+  +   +S
Sbjct: 38  VSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFS 97

Query: 180 AVLRA----CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235
           +VL+     CD L   RQLHC  IK GF  DV V ++L+D Y K    ++   VF+EM  
Sbjct: 98  SVLKVSATLCDELF-GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKE 156

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
           R++V W ++I G+A+NS  DE L L+ RM+  G   +  T  + L       +   G QV
Sbjct: 157 RNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQV 216

Query: 296 HVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H  V+K   D  + ++N+L+++Y KCG++  A  +F +   K V++W++MISG A NG  
Sbjct: 217 HTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLD 276

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAG---FVEDGWNHFKSMKKFYGIDPGREH 410
            EAL +F SM+++ ++ +  +   V+  C++     F E    H   +K  YG    +  
Sbjct: 277 LEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQ--LHCSVVK--YGFLFDQNI 332

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            + ++    +   + +A++L  E+    + V+W A++  
Sbjct: 333 RTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISG 371


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 255/612 (41%), Positives = 359/612 (58%), Gaps = 37/612 (6%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMH--------- 119
           GV  +S T+  L+K C    A +E K +H HVL  G E + F+   L+NM+         
Sbjct: 127 GVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYA 186

Query: 120 ------------VKFSLL----------EEAQVLFDQMPERNVVSWTTMISAYCDAKMND 157
                       V F+ L          ++A+ LF+++P R+ VSW  MI+ Y  +   +
Sbjct: 187 ELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFE 246

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALI 214
           +AL     M R  V PN  T   VL AC    SL +   +   I   G  S++ + +ALI
Sbjct: 247 EALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALI 306

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           D+Y+K G+L  A  +F  +  +D++ WN +IGG++  +   EAL L+++M+++    +  
Sbjct: 307 DMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDV 366

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKYDHDLI---LNNALLDMYCKCGSLEDAMSVFSR 331
           T  S+L AC  L  L+LG  +H ++ K    L    L  +L+DMY KCG++E A  VF+ 
Sbjct: 367 TFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAG 426

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           M  K + SW+ MISGLA +G++  AL+LF  M+    +P+ IT VGVL ACSHAG VE G
Sbjct: 427 MKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELG 486

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
              F SM + Y I P  +HY CMIDLLGRAG   EA  L+  M  +PD   W +LLGAC+
Sbjct: 487 RQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACR 546

Query: 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGC 511
           VH N +L   AAK +  L+P++PG Y+LLSNIYA + +WD+VA +R  +  +G+ K PGC
Sbjct: 547 VHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGC 606

Query: 512 SWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDS 571
           S IEV+  +H F V D  H Q   I K L  + Q L   G+ PDT+ VL D++ E KE S
Sbjct: 607 SSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGS 666

Query: 572 IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHH 631
           + +HSEKLAI FGL+S     TIRI KNLR+CG+CH+  KL +K+ N+ I+ RD  R+HH
Sbjct: 667 LSHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHH 726

Query: 632 FQDGNCSCGDYW 643
           F+DG+CSC DYW
Sbjct: 727 FKDGSCSCMDYW 738



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/414 (31%), Positives = 217/414 (52%), Gaps = 47/414 (11%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQMPERNVVSWTTM 146
           + +  K +H+ ++  G     F ++ L+       F  L  A +LF+ + + N   W TM
Sbjct: 44  SFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTM 103

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGF 203
           I     +     A++  + ML  GV PN +T+  +L++C  +      +Q+H  ++K+G 
Sbjct: 104 IRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGL 163

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFN-------------------------------E 232
           ESD FV ++LI++YA+ GEL  AE VF+                               E
Sbjct: 164 ESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEE 223

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           +P RD V WN++I G+AQ+   +EAL  ++ MKRA  A ++ST+ +VL AC     LELG
Sbjct: 224 IPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELG 283

Query: 293 TQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
             V   +   DH L  N    NAL+DMY KCG L+ A  +F  + +KD+ISW+ MI G +
Sbjct: 284 NWVRSWI--EDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYS 341

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPG 407
                +EAL LF  M+ S ++PN +T V +L AC++ G ++ G W H    KKF G+   
Sbjct: 342 HMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLT-N 400

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV-TWRALLGACKVHRNTDLAI 460
              ++ +ID+  + G ++ A ++   M  +P ++ +W A++    +H + ++A+
Sbjct: 401 TSLWTSLIDMYAKCGNIEAAKQVFAGM--KPKSLGSWNAMISGLAMHGHANMAL 452



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 158/331 (47%), Gaps = 41/331 (12%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRDL 238
           +L  C S   L+Q+H  IIK G  +  F  S LI+  A    G L  A  +F  +   + 
Sbjct: 38  LLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQ 97

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
            +WN++I G + +S    A++ Y RM   G   +  T   +L++C  +   + G Q+H H
Sbjct: 98  FIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGH 157

Query: 299 VLK--YDHDLILNNALLDMYCKCGS-------------------------------LEDA 325
           VLK   + D  ++ +L++MY + G                                L+DA
Sbjct: 158 VLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDA 217

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F  +  +D +SW+ MI+G AQ+G  +EAL  F+ MK + + PN  T+V VL AC+ +
Sbjct: 218 RRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQS 277

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G +E G N  +S  + +G+       + +ID+  + G L +A  L  E   E D ++W  
Sbjct: 278 GSLELG-NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLF-EGICEKDIISWNV 335

Query: 446 LLGACKVHRNT---DLAICAAKKILNLDPQD 473
           ++G    H N+    LA+    +  N++P D
Sbjct: 336 MIGGYS-HMNSYKEALALFRKMQQSNVEPND 365



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 172/379 (45%), Gaps = 39/379 (10%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A+     M+   V  +  T   ++  C    ++E    V + +   G      LVN L+
Sbjct: 247 EALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALI 306

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   L++A+ LF+ + E++++SW  MI  Y       +AL L   M +  V PN  
Sbjct: 307 DMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDV 366

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIK--VGFESDVFVRSALIDIYAKLGELRNAECVFN 231
           T+ ++L AC  L  L   + +H  I K  +G  ++  + ++LID+YAK G +  A+ VF 
Sbjct: 367 TFVSILPACAYLGALDLGKWIHAYIDKKFLGL-TNTSLWTSLIDMYAKCGNIEAAKQVFA 425

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
            M  + L  WN++I G A +   + AL L+++M+  GF  D  T   VL AC+   L+EL
Sbjct: 426 GMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVEL 485

Query: 292 GTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           G Q    +++ D+D                           I   +  +  MI  L + G
Sbjct: 486 GRQCFSSMVE-DYD---------------------------ISPKLQHYGCMIDLLGRAG 517

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
              EA  L ++M+   +KP+      +L AC   G VE G    K + +    +PG   Y
Sbjct: 518 LFDEAEALMKNME---MKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGA--Y 572

Query: 412 SCMIDLLGRAGKLQEAVKL 430
             + ++   AG+  +  ++
Sbjct: 573 VLLSNIYATAGRWDDVARI 591


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/585 (38%), Positives = 365/585 (62%), Gaps = 6/585 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   G+  D  T   +   C     +   + VH+  +   F  E    N LL+M+ K   
Sbjct: 136 MLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGD 195

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L+ A+ +F +M +R+VVS+T+MI+ Y    +  +A++L   M  EG+ P+++T +AVL  
Sbjct: 196 LDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNC 255

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C    +L   +++H  I +     D+FV +AL+D+YAK G ++ AE VF+EM  +D++ W
Sbjct: 256 CARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISW 315

Query: 242 NSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           N+IIGG+++N   +EAL+L+  + +   F+ D+ T+  VL AC  L+  + G ++H +++
Sbjct: 316 NTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIM 375

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           +  Y  D  + N+L+DMY KCG+L  A  +F  +  KD++SW+ MI+G   +G+ +EA+ 
Sbjct: 376 RNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIA 435

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
           LF  M+ + I+ + I+ V +L+ACSH+G V++GW  F  M+    I+P  EHY+C++D+L
Sbjct: 436 LFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDML 495

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
            R G L +A + I  MP  PDA  W ALL  C++H +  LA   A+K+  L+P++ G Y+
Sbjct: 496 ARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYV 555

Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
           L++NIYA ++KW++V  +RK +  RG+ K PGCSWIE+  +++ F   DSS+P+ + I  
Sbjct: 556 LMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEA 615

Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRK 598
            L+ +  +++  GY+P T Y L D E  +KE+++  HSEKLA+  G++S   GK IR+ K
Sbjct: 616 FLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTK 675

Query: 599 NLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           NLR+CGDCH  AK  +K+  + IV+RD  R+H F+DG+CSC  +W
Sbjct: 676 NLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 129/407 (31%), Positives = 219/407 (53%), Gaps = 10/407 (2%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D   ++     M   GV  DS T++ + K   +  +V   + +H  +L  GF     + N
Sbjct: 24  DFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGN 83

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L+  ++K   ++ A+ +FD+M ER+V+SW ++I+ Y    + +K L + + ML  G+  
Sbjct: 84  SLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEI 143

Query: 174 NMFTYSAVLRAC-DSLIIL--RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           ++ T  +V   C DS +I   R +H   +K  F  +    + L+D+Y+K G+L +A+ VF
Sbjct: 144 DLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVF 203

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
            EM  R +V + S+I G+A+     EA+ L++ M+  G + D  T+T+VL  C    LL+
Sbjct: 204 REMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLD 263

Query: 291 LGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G +VH  + + D   D+ ++NAL+DMY KCGS+++A  VFS M  KD+ISW+T+I G +
Sbjct: 264 EGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYS 323

Query: 349 QNGYSQEALKLFE-SMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDP 406
           +N Y+ EAL LF   ++  R  P+  T+  VL AC+     + G   H   M+  Y  D 
Sbjct: 324 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSD- 382

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            R   + ++D+  + G L  A  L  ++    D V+W  ++    +H
Sbjct: 383 -RHVANSLVDMYAKCGALLLAHMLFDDIA-SKDLVSWTVMIAGYGMH 427



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 173/325 (53%), Gaps = 11/325 (3%)

Query: 132 FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL 191
           FD++     + W  +++    +     ++ L   M+  GV  + +T+S V ++  SL  +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 192 ---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
               QLH  I+K GF     V ++L+  Y K   + +A  VF+EM  RD++ WNSII G+
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDL 306
             N   ++ L+++ +M  +G   D +T+ SV   C    L+ LG  VH   +K  +  + 
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
              N LLDMY KCG L+ A +VF  M  + V+S+++MI+G A+ G + EA+KLFE M+  
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY--SCMIDLLGRAGKL 424
            I P+  T+  VL  C+    +++G    + +K+    D G + +  + ++D+  + G +
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKE---NDLGFDIFVSNALMDMYAKCGSM 297

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGA 449
           QEA  +  EM  + D ++W  ++G 
Sbjct: 298 QEAELVFSEMRVK-DIISWNTIIGG 321



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 188/375 (50%), Gaps = 20/375 (5%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+K    M+  G+  D  T   ++ CC     ++E K VH  +       + F+ N L++
Sbjct: 230 AVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMD 289

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMF 176
           M+ K   ++EA+++F +M  ++++SW T+I  Y      ++AL L   +L E    P+  
Sbjct: 290 MYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDER 349

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T + VL AC SL      R++H  I++ G+ SD  V ++L+D+YAK G L  A  +F+++
Sbjct: 350 TVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDI 409

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
            ++DLV W  +I G+  +    EA+ L+ +M++AG  AD+ +  S+L AC+   L++ G 
Sbjct: 410 ASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGW 469

Query: 294 Q---VHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQ 349
           +   +  H  K +  +     ++DM  + G L  A      M I  D   W  ++ G   
Sbjct: 470 RFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 529

Query: 350 NGYSQEALKLFESMKVSRIKP---NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
           +   + A K+ E  KV  ++P    Y  ++  ++A +      + W   K ++K  G   
Sbjct: 530 HHDVKLAEKVAE--KVFELEPENTGYYVLMANIYAEA------EKWEQVKRLRKRIGQRG 581

Query: 407 GREHYSC-MIDLLGR 420
            R++  C  I++ GR
Sbjct: 582 LRKNPGCSWIEIKGR 596


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/593 (37%), Positives = 367/593 (61%), Gaps = 6/593 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           + +     M   G+  D  T   +   C     +   + VH+  +   F  E    N LL
Sbjct: 279 KGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLL 338

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   L+ A+ +F +M +R+VVS+T+MI+ Y    +  +A++L   M  EG+ P+++
Sbjct: 339 DMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVY 398

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T +AVL  C    +L   +++H  I +     D+FV +AL+D+YAK G ++ AE VF+EM
Sbjct: 399 TVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEM 458

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELG 292
             +D++ WN+IIGG+++N   +EAL+L+  + +   F+ D+ T+  VL AC  L+  + G
Sbjct: 459 RVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKG 518

Query: 293 TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
            ++H ++++  Y  D  + N+L+DMY KCG+L  A  +F  +  KD++SW+ MI+G   +
Sbjct: 519 REIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMH 578

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
           G+ +EA+ LF  M+ + I+ + I+ V +L+ACSH+G V++GW  F  M+    I+P  EH
Sbjct: 579 GFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEH 638

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
           Y+C++D+L R G L +A + I  MP  PDA  W ALL  C++H +  LA   A+K+  L+
Sbjct: 639 YACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELE 698

Query: 471 PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSH 530
           P++ G Y+L++NIYA ++KW++V  +RK +  RG+ K PGCSWIE+  +++ F   DSS+
Sbjct: 699 PENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSN 758

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           P+ + I   L+ +  +++  GY+P T Y L D E  +KE+++  HSEKLA+  G++S   
Sbjct: 759 PETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGH 818

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GK IR+ KNLR+CGDCH  AK  +K+  + IV+RD  R+H F+DG+CSC  +W
Sbjct: 819 GKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 124/433 (28%), Positives = 220/433 (50%), Gaps = 13/433 (3%)

Query: 24  TITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKC 83
           T++  V S  T  R+ +       RFC   +L  A+K +       +  D  T   +++ 
Sbjct: 46  TVSDCVDSITTFDRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDI--DPRTLCSVLQL 103

Query: 84  CLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSW 143
           C    ++++ K V N +   GF  ++ L + L  M+     L+EA  +FD++     + W
Sbjct: 104 CADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFW 163

Query: 144 TTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIK 200
             +++    +     ++ L   M+  GV  + +T+S V ++  SL  +    QLH  I+K
Sbjct: 164 NILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILK 223

Query: 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNL 260
            GF     V ++L+  Y K   + +A  VF+EM  RD++ WNSII G+  N   ++ L++
Sbjct: 224 SGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSV 283

Query: 261 YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCK 318
           + +M  +G   D +T+ SV   C    L+ LG  VH   +K  +  +    N LLDMY K
Sbjct: 284 FVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSK 343

Query: 319 CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
           CG L+ A +VF  M  + V+S+++MI+G A+ G + EA+KLFE M+   I P+  T+  V
Sbjct: 344 CGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAV 403

Query: 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY--SCMIDLLGRAGKLQEAVKLIHEMPY 436
           L  C+    +++G    + +K+    D G + +  + ++D+  + G +QEA  +  EM  
Sbjct: 404 LNCCARYRLLDEGKRVHEWIKEN---DLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV 460

Query: 437 EPDAVTWRALLGA 449
           + D ++W  ++G 
Sbjct: 461 K-DIISWNTIIGG 472


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/591 (40%), Positives = 358/591 (60%), Gaps = 5/591 (0%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
              +  H M+  GV+     +   +K C  +  +   K +H  V+  G+E    +   L+
Sbjct: 289 EGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALM 348

Query: 117 NMHVKFSLLEEAQVLFDQM-PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
             + K S ++EA  LF       NVV+WT MI  +     N KA++L   M REGVRPN 
Sbjct: 349 VTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNH 408

Query: 176 FTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235
           FTYS VL    S  +L QLH  IIK  +E    V +AL+D Y K G +  +  VF  +P 
Sbjct: 409 FTYSTVLAGKPS-SLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPA 467

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG-LALLELGTQ 294
           +D+V W++++ G AQ  D ++A+ ++ ++ + G   ++ T +SV+ AC+   A +E G Q
Sbjct: 468 KDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQ 527

Query: 295 VHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H   +K    + L +++ALL MY K G++E A  VF+R  ++D++SW++MI+G  Q+G 
Sbjct: 528 IHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGD 587

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
           +++AL++F+ M+   +  + +T +GVL AC+HAG VE+G  +F  M K Y ID   EHYS
Sbjct: 588 AKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYS 647

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           CM+DL  RAG   +A+ +I+ MP+      WR LL AC+VHRN +L   AA+K+++L P 
Sbjct: 648 CMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPN 707

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           D   Y+LLSNI+A +  W+E A VRK M  R + KE GCSWIE+  +I +F   D SHP 
Sbjct: 708 DAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPF 767

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
            D +   L+ L  KL  +GY PDTNYV  D+E E KE  +  HSE+LAI +GL++L  G 
Sbjct: 768 SDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGA 827

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            I+I KNLRICGDCH   +L + +E +T+++RD  R+HHF+ G CSCG YW
Sbjct: 828 PIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/425 (30%), Positives = 218/425 (51%), Gaps = 15/425 (3%)

Query: 42  LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL 101
           LL DF+R  + R+     K +H+    G+  D +T +  +K C         + VH   L
Sbjct: 75  LLFDFSRNNHDREALHLFKDLHS---SGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSL 131

Query: 102 SGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALE 161
             GF  +  +   L++M++K    E+ + +FD+M  +NVVSWT+++S Y    +ND+ + 
Sbjct: 132 KSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIH 191

Query: 162 LLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYA 218
           L+  M  EGV PN FT++ VL A     I+    Q+H  I+K GFE   FV +ALI +Y 
Sbjct: 192 LINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYL 251

Query: 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278
           K   + +AE VF+ M  RD V WN +IGG+A      E   ++ RM+ AG    ++   +
Sbjct: 252 KSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCT 311

Query: 279 VLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQK 335
            L+ C+    L    Q+H  V+K  Y+    +  AL+  Y KC S+++A  +FS      
Sbjct: 312 ALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAH 371

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
           +V++W+ MI G  QN  +++A+ LF  M    ++PN+ T   VL     +   +    H 
Sbjct: 372 NVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQ---LHA 428

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN 455
           + +K +Y   P     + ++D   + G + E+ ++ + +P + D V W A+L      R+
Sbjct: 429 QIIKAYYEKVPSVA--TALLDAYVKTGNVVESARVFYSIPAK-DIVAWSAMLTGLAQTRD 485

Query: 456 TDLAI 460
           ++ A+
Sbjct: 486 SEKAM 490



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 171/349 (48%), Gaps = 28/349 (8%)

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A  LFD+ P +++  +  ++  +     + +AL L   +   G+  +  T S  L+ C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 188 L---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L   ++ RQ+HC  +K GF  DV V ++L+D+Y K  +  +   +F+EM  +++V W S+
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           + G+A+N   DE ++L  +M+  G   +  T  +VL A    +++E G QVH  ++K  +
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           +    + NAL+ MY K   + DA +VF  M+ +D ++W+ MI G A  G+  E  ++F  
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR 296

Query: 363 MKVSRIKPNYITIVGVLFACS-----------HAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           M+++ +K +       L  CS           H G V++G+   + ++            
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR------------ 344

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           + ++    +   + EA KL        + VTW A++G    + N   A+
Sbjct: 345 TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAV 393



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 2/170 (1%)

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           R A  +F+E P +D+  +N ++  F++N+   EAL+L+K +  +G   D  TL+  L+ C
Sbjct: 55  RYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVC 114

Query: 284 TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
             L    +G QVH   LK  +  D+ +  +L+DMY K    ED   +F  M  K+V+SW+
Sbjct: 115 GVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWT 174

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           +++SG A+NG + E + L   M++  + PN  T   VL A +    +E G
Sbjct: 175 SLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGG 224



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 22/214 (10%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHA-VEEAKLVHNHVLSGG 104
            T     RD  +AM+    +   GV+ +  T++ +I  C +  A VE  K +H   +  G
Sbjct: 477 LTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSG 536

Query: 105 FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
                 + + LL M+ K   +E A+ +F +  ER++VSW +MI+ Y       KALE+  
Sbjct: 537 KSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQ 596

Query: 165 FMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFES-DVFVR-----------SA 212
            M  +G+  +  T+  VL AC         H G+++ G +  ++ ++           S 
Sbjct: 597 IMQNQGLPLDDVTFIGVLTACT--------HAGLVEEGEKYFNIMIKDYHIDKKXEHYSC 648

Query: 213 LIDIYAKLGELRNAECVFNEMP-TRDLVVWNSII 245
           ++D+Y++ G    A  + N MP      +W +++
Sbjct: 649 MVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLL 682


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/591 (40%), Positives = 359/591 (60%), Gaps = 5/591 (0%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
              +  H M+  GV+     +   +K C  +  +   K +H  V+  G+E    +   L+
Sbjct: 289 EGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALM 348

Query: 117 NMHVKFSLLEEAQVLFDQM-PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
             + K S ++EA  LF       NVV+WT MI  +     N+KA++L   M REGVRPN 
Sbjct: 349 VTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNH 408

Query: 176 FTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235
           FTYS VL    S  +L QLH  IIK  +E    V +AL+D Y K G +  +  VF  +P 
Sbjct: 409 FTYSTVLAGKPS-SLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPA 467

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG-LALLELGTQ 294
           +D+V W++++ G AQ  D ++A+ ++ ++ + G   ++ T +SV+ AC+   A +E G Q
Sbjct: 468 KDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQ 527

Query: 295 VHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H   +K    + L +++ALL MY K G++E A  VF+R  ++D++SW++MI+G  Q+G 
Sbjct: 528 IHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGD 587

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
           +++AL++F+ M+   +  + +T +GVL AC+HAG VE+G  +F  M K Y ID   EHYS
Sbjct: 588 AKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYS 647

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           CM+DL  RAG   +A+ +I+ MP+      WR LL AC+VHRN +L   AA+K+++L P 
Sbjct: 648 CMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPN 707

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           D   Y+LLSNI+A +  W+E A VRK M  R + KE GCSWIE+  +I +F   D SHP 
Sbjct: 708 DAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPF 767

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
            D +   L+ L  KL  +GY PDTNYV  D+E E KE  +  HSE+LAI +GL++L  G 
Sbjct: 768 SDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGA 827

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            I+I KNLRICGDCH   +L + +E +T+++RD  R+HHF+ G CSCG YW
Sbjct: 828 PIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/425 (30%), Positives = 218/425 (51%), Gaps = 15/425 (3%)

Query: 42  LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL 101
           LL DF+R  + R+     K +H+    G+  D +T +  +K C         + VH   L
Sbjct: 75  LLFDFSRNNHDREALHLFKDLHS---SGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSL 131

Query: 102 SGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALE 161
             GF  +  +   L++M++K    E+ + +FD+M  +NVVSWT+++S Y    +ND+ + 
Sbjct: 132 KSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIH 191

Query: 162 LLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYA 218
           L+  M  EGV PN FT++ VL A     I+    Q+H  I+K GFE   FV +ALI +Y 
Sbjct: 192 LINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYL 251

Query: 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278
           K   + +AE VF+ M  RD V WN +IGG+A      E   ++ RM+ AG    ++   +
Sbjct: 252 KSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCT 311

Query: 279 VLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQK 335
            L+ C+    L    Q+H  V+K  Y+    +  AL+  Y KC S+++A  +FS      
Sbjct: 312 ALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAH 371

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
           +V++W+ MI G  QN  +++A+ LF  M    ++PN+ T   VL     +   +    H 
Sbjct: 372 NVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQ---LHA 428

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN 455
           + +K +Y   P     + ++D   + G + E+ ++ + +P + D V W A+L      R+
Sbjct: 429 QIIKAYYEKVPSVA--TALLDAYVKTGNVVESARVFYSIPAK-DIVAWSAMLTGLAQTRD 485

Query: 456 TDLAI 460
           ++ A+
Sbjct: 486 SEKAM 490



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 172/349 (49%), Gaps = 28/349 (8%)

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A  LFD+ P +++  +  ++  +     + +AL L   +   G+  +  T S  L+ C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 188 L---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L   ++ RQ+HC  +K GF  DV V ++L+D+Y K  +  +   +F+EM  +++V W S+
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           + G+A+N   DE ++L  +M+  G   +  T  +VL A    +++E G QVH  ++K  +
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           +    + NAL+ MY K   + DA +VF  M+ +D ++W+ MI G A  G+  E  ++F  
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR 296

Query: 363 MKVSRIKPNYITIVGVLFACS-----------HAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           M+++ +K +       L  CS           H G V++G+   + ++            
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR------------ 344

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           + ++    +   + EA KL        + VTW A++G    + N + A+
Sbjct: 345 TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAV 393



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 2/170 (1%)

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           R A  +F+E P +D+  +N ++  F++N+   EAL+L+K +  +G   D  TL+  L+ C
Sbjct: 55  RYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVC 114

Query: 284 TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
             L    +G QVH   LK  +  D+ +  +L+DMY K    ED   +F  M  K+V+SW+
Sbjct: 115 GVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWT 174

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           +++SG A+NG + E + L   M++  + PN  T   VL A +    +E G
Sbjct: 175 SLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGG 224



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 22/214 (10%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHA-VEEAKLVHNHVLSGG 104
            T     RD  +AM+    +   GV+ +  T++ +I  C +  A VE  K +H   +  G
Sbjct: 477 LTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSG 536

Query: 105 FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
                 + + LL M+ K   +E A+ +F +  ER++VSW +MI+ Y       KALE+  
Sbjct: 537 KSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQ 596

Query: 165 FMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVG------------FESDVFVRSA 212
            M  +G+  +  T+  VL AC         H G+++ G             +  +   S 
Sbjct: 597 IMQNQGLPLDDVTFIGVLTACT--------HAGLVEEGEKYFNIMIKDYHIDKKIEHYSC 648

Query: 213 LIDIYAKLGELRNAECVFNEMP-TRDLVVWNSII 245
           ++D+Y++ G    A  + N MP      +W +++
Sbjct: 649 MVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLL 682


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/595 (39%), Positives = 366/595 (61%), Gaps = 5/595 (0%)

Query: 54   DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
            +L  + +    MQ  G+  +  TY  +++ C +  A+   + +H HV+  GF+   ++ +
Sbjct: 443  NLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCS 502

Query: 114  ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            +L++M+ K+  L  A  +  ++PE +VVSWT MI+ Y    M  +AL+L   M   G++ 
Sbjct: 503  VLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQF 562

Query: 174  NMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
            +   +++ + AC  +  LRQ   +H      GF +D+ + +ALI +YA+ G ++ A   F
Sbjct: 563  DNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAF 622

Query: 231  NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
             ++  ++ + WNS++ G AQ+   +EAL ++ RM R     +  T  S + A   LA ++
Sbjct: 623  EKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIK 682

Query: 291  LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
             G Q+H  VLK  YD +  ++N+L+ +Y K GS+ DA   F+ M +++VISW+ MI+G +
Sbjct: 683  QGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYS 742

Query: 349  QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
            Q+G   EAL+LFE MKV  I PN++T VGVL ACSH G V++G ++F+SM K + + P  
Sbjct: 743  QHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKS 802

Query: 409  EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
            EHY C++DLLGRAG+L  A++ I EMP   DA+ WR LL AC +H+N ++   AA  +L 
Sbjct: 803  EHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLE 862

Query: 469  LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
            L+P+D  TY+L+SNIYA S++W      RK M+ RG+ KEPG SWIEV   +HAF   D 
Sbjct: 863  LEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDK 922

Query: 529  SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
             HP  ++I +++ HL ++   +GY  D+  +L + E  QK+     HSEKLAI FGL+SL
Sbjct: 923  LHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSL 982

Query: 589  TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
                 IR+ KNLR+C DCH + K  +K+ N++I++RD  R+HHF  G CSC D+W
Sbjct: 983  GNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/402 (31%), Positives = 212/402 (52%), Gaps = 7/402 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           RA++    MQ   ++ D +T A L+  C +  A+ +   +H+H +  G   +  L   LL
Sbjct: 345 RALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLL 404

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +++ K + +E A   F      N+V W  M+ AY        + E+   M  EG+ PN F
Sbjct: 405 DLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQF 464

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           TY ++LR C SL  L    Q+H  +IK GF+ +V+V S LID+YAK G+L  A  +   +
Sbjct: 465 TYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRL 524

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           P  D+V W ++I G+ Q+    EAL L++ M+  G   D     S + AC G+  L  G 
Sbjct: 525 PEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQ 584

Query: 294 QVHV--HVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+H   +   +  DL +NNAL+ +Y +CG +++A   F ++  K+ ISW++++SGLAQ+G
Sbjct: 585 QIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSG 644

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           Y +EAL++F  M  +  + N  T    + A +    ++ G     SM    G D  RE  
Sbjct: 645 YFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQG-QQIHSMVLKTGYDSEREVS 703

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           + +I L  ++G + +A +  ++M  E + ++W A++     H
Sbjct: 704 NSLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITGYSQH 744



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/419 (31%), Positives = 217/419 (51%), Gaps = 12/419 (2%)

Query: 38  NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVH 97
           NS S   D T    ++   + ++ M+ M+  GVR++   Y  L++ CL   ++ E   +H
Sbjct: 24  NSHSF--DQTTLHMEQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLH 81

Query: 98  NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND 157
             +   GF+ E  L++ L++ + +      A  +FD+   R+V SW  MI  +   K N 
Sbjct: 82  CRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNF 141

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRACDSLII----LRQLHCGIIKVGFESDVFVRSAL 213
           +   L   ML EG+ PN +T++ VL+AC    I    ++Q+H      GF+S   V + L
Sbjct: 142 QVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLL 201

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           ID+Y+K G + +A+ VFN +  +D+V W ++I G +QN   +EA+ L+  M  +      
Sbjct: 202 IDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTP 261

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
             L+SVL A T + L ELG Q+H  V+K  +  +  + N L+ +Y +   L  A  +FS 
Sbjct: 262 YVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFST 321

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           M  +D +S++++ISGL Q G+S  AL+LF  M+   +KP+ IT+  +L AC+  G +  G
Sbjct: 322 MNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKG 381

Query: 392 WN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
              H  ++K     D   E    ++DL  +   ++ A K       E + V W  +L A
Sbjct: 382 MQLHSHAIKAGMSADIILE--GSLLDLYSKCADVETAHKFFLTTETE-NIVLWNVMLVA 437



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 205/398 (51%), Gaps = 14/398 (3%)

Query: 65  MQCHGVRADSVTYAELIKCCLARH-AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123
           M   G+  +  T+A ++K C+    A    K VH+     GF+    + N+L++++ K  
Sbjct: 150 MLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNG 209

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
            +E A+ +F+ +  +++V+W  MIS      + ++A+ L   M    + P  +  S+VL 
Sbjct: 210 YIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLS 269

Query: 184 ACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           A   + +     QLHC +IK GF S+ +V + L+ +Y++  +L +AE +F+ M +RD V 
Sbjct: 270 ASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVS 329

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           +NS+I G  Q    D AL L+ +M+R     D  T+ S+L AC  +  L  G Q+H H +
Sbjct: 330 YNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAI 389

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K     D+IL  +LLD+Y KC  +E A   F     ++++ W+ M+    Q     ++ +
Sbjct: 390 KAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFE 449

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSC--MI 415
           +F  M++  + PN  T   +L  C+  G +  G   H   +K  + ++     Y C  +I
Sbjct: 450 IFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNV----YVCSVLI 505

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           D+  + G+L  A++++  +P E D V+W A++     H
Sbjct: 506 DMYAKYGQLALALRILRRLP-EDDVVSWTAMIAGYVQH 542


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/607 (38%), Positives = 366/607 (60%), Gaps = 36/607 (5%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           + +T++ ++  C     V+  + ++  +L  GF  + F+ + L++M+ K  L+ +A+  F
Sbjct: 137 NRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYF 196

Query: 133 DQMPERNVV-------------------------------SWTTMISAYCDAKMNDKALE 161
           D+MPERNVV                               SWT MI+      +  +AL+
Sbjct: 197 DEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALD 256

Query: 162 LLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYA 218
           +   M   G   + FT+ +VL AC SL+ L   +Q+H  +I+   + +VFV SAL+D+Y+
Sbjct: 257 MFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYS 316

Query: 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278
           K   +++AE VF  MP ++++ W +++ G+ QN   +EA+ ++  M+R G   D  TL S
Sbjct: 317 KCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGS 376

Query: 279 VLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD 336
           V+ +C  LA LE G Q H   L       + ++NAL+ +Y KCGS E++  +F+ M  +D
Sbjct: 377 VISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRD 436

Query: 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
            +SW+ +++G AQ G + E + LFE M    +KP+ +T +GVL ACS AG VE G  +F+
Sbjct: 437 EVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFE 496

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
           SM K +GI P  +H +C+IDLLGRAG+L+EA   I+ MP  PD V W  LL +C+VH + 
Sbjct: 497 SMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDM 556

Query: 457 DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEV 516
           ++   AA  ++ L+PQ+P +Y+LLS++YA+  KWD+VA++R+ MR + + KEPG SWI+ 
Sbjct: 557 EIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKY 616

Query: 517 NKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHS 576
             ++H F+  D S P + +I   L+ L  K++  GY PD + VL D+E  +K   + +HS
Sbjct: 617 KGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEESEKIKMLNHHS 676

Query: 577 EKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGN 636
           EKLAI FGL+ +  G  IR+ KNLR+CGDCH   K  +K+  + I++RD +R+H F+DG 
Sbjct: 677 EKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVRDAVRFHLFKDGT 736

Query: 637 CSCGDYW 643
           CSCGD+W
Sbjct: 737 CSCGDFW 743



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 143/446 (32%), Positives = 223/446 (50%), Gaps = 70/446 (15%)

Query: 72  ADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVL 131
           + S  YA L+K C       +AK +H  +L    +PETFL N L+  + K   L  A  +
Sbjct: 3   SSSNYYASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHV 62

Query: 132 FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM-LREGVRPNM--------------- 175
           FD +P+ N+ SW T++S Y    +  +  ++   M  R+GV  N+               
Sbjct: 63  FDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAV 122

Query: 176 ----------------FTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDI 216
                            T+S +L  C     +   RQ++  I+K GF SDVFV S L+D+
Sbjct: 123 RVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDM 182

Query: 217 YAKLGELRNAECVFNEMPTRDLVV-------------------------------WNSII 245
           Y KLG + +A+  F+EMP R++V+                               W  +I
Sbjct: 183 YTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMI 242

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH- 304
            G  QN    EAL++++ M+ AGFA DQ T  SVL AC  L  L  G Q+H +V++ DH 
Sbjct: 243 TGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHK 302

Query: 305 -DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            ++ + +AL+DMY KC S++ A +VF RM QK+VISW+ M+ G  QNG+S+EA+K+F  M
Sbjct: 303 DNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEM 362

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
           + + ++P+  T+  V+ +C++   +E+G   F       G+       + +I L G+ G 
Sbjct: 363 QRNGVEPDDFTLGSVISSCANLASLEEG-AQFHCRALVSGLISFITVSNALITLYGKCGS 421

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGA 449
            + + +L  EM    D V+W ALL  
Sbjct: 422 TENSHRLFTEMNIR-DEVSWTALLAG 446



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 165/309 (53%), Gaps = 10/309 (3%)

Query: 52  QRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Q  L R A+     M+  G   D  T+  ++  C +  A+ E K +H +V+    +   F
Sbjct: 247 QNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVF 306

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           + + L++M+ K   ++ A+ +F +MP++NV+SWT M+  Y     +++A+++   M R G
Sbjct: 307 VGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNG 366

Query: 171 VRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
           V P+ FT  +V+ +C +L  L    Q HC  +  G  S + V +ALI +Y K G   N+ 
Sbjct: 367 VEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSH 426

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            +F EM  RD V W +++ G+AQ    +E + L++RM   G   D  T   VL AC+   
Sbjct: 427 RLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAG 486

Query: 288 LLELGTQVHVHVLKYDHDL--ILNN--ALLDMYCKCGSLEDAMSVFSRM-IQKDVISWST 342
           L+E G Q    ++K +H +  I+++   ++D+  + G LE+A +  + M    DV+ W+T
Sbjct: 487 LVEKGLQYFESMIK-EHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWAT 545

Query: 343 MISGLAQNG 351
           ++S    +G
Sbjct: 546 LLSSCRVHG 554


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 254/630 (40%), Positives = 368/630 (58%), Gaps = 15/630 (2%)

Query: 19  RQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYA 78
           R    T  P +   NT+ R    +L+D    C+Q     +++  H+M+  G+  DS T+ 
Sbjct: 63  RILDQTKEPNIFLFNTMIR--GLVLND----CFQE----SIEIYHSMRKEGLSPDSFTFP 112

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
            ++K C      E    +H+ V+  G E + F+   L+N++ K   ++ A  +FD +P++
Sbjct: 113 FVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDK 172

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LH 195
           N  SWT  IS Y       +A+++   +L  G+RP+ F+   VL AC     LR    + 
Sbjct: 173 NFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWID 232

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
             I + G   +VFV +AL+D Y K G +  A  VF+ M  +++V W+S+I G+A N    
Sbjct: 233 EYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPK 292

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALL 313
           EAL+L+ +M   G   D   +  VL +C  L  LELG      ++  ++  + +L  AL+
Sbjct: 293 EALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALI 352

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           DMY KCG ++ A  VF  M +KD + W+  ISGLA +G+ ++AL LF  M+ S IKP+  
Sbjct: 353 DMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRN 412

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
           T VG+L AC+HAG VE+G  +F SM+  + + P  EHY CM+DLLGRAG L EA +LI  
Sbjct: 413 TFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKS 472

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
           MP E +A+ W ALLG C++HR+T L     KK++ L+P   G Y+LLSNIYA S KW+E 
Sbjct: 473 MPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEA 532

Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYA 553
           A++R  M  RG+ K PG SWIEV+  +H F V D+SHP  +KI   L  L + L   GY 
Sbjct: 533 AKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYV 592

Query: 554 PDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLT 613
           P T++VL D+E E+KE  I  HSEKLA+ FGL+S      I + KNLR+CGDCH   K  
Sbjct: 593 PTTDHVLFDIEEEEKEHFIGCHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHI 652

Query: 614 AKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +++  + I++RD  R+H F DG CSC DYW
Sbjct: 653 SRIAGREIIVRDNNRFHCFTDGLCSCKDYW 682



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 198/400 (49%), Gaps = 48/400 (12%)

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
           K +H  +L  G + +T+L+N +L     F     +  + DQ  E N+  + TMI      
Sbjct: 27  KHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLN 86

Query: 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVR 210
               +++E+   M +EG+ P+ FT+  VL+AC  ++   +  ++H  ++K G E+D FV+
Sbjct: 87  DCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVK 146

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
            +LI++Y K G + NA  VF+++P ++   W + I G+       EA+++++R+   G  
Sbjct: 147 ISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLR 206

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSV 328
            D  +L  VL AC     L  G  +  ++ +     ++ +  AL+D Y KCG++E A SV
Sbjct: 207 PDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSV 266

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           F  M++K+++SWS+MI G A NG  +EAL LF  M    +KP+   +VGVL +C+  G +
Sbjct: 267 FDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGAL 326

Query: 389 EDG-----------------------------------WNHFKSMKKFYGIDPGREHYSC 413
           E G                                   W  F+ M+K       R  ++ 
Sbjct: 327 ELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRK-----KDRVVWNA 381

Query: 414 MIDLLGRAGKLQEAVKLIHEMP---YEPDAVTWRALLGAC 450
            I  L  +G +++A+ L  +M     +PD  T+  LL AC
Sbjct: 382 AISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCAC 421



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 159/351 (45%), Gaps = 40/351 (11%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           L+ +H  ++++G + D ++ + ++      G    +  + ++    ++ ++N++I G   
Sbjct: 26  LKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVL 85

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLIL 308
           N    E++ +Y  M++ G + D  T   VL+AC  +   ELG ++H  V+K   + D  +
Sbjct: 86  NDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFV 145

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
             +L+++Y KCG +++A  VF  +  K+  SW+  ISG    G  +EA+ +F  +    +
Sbjct: 146 KISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGL 205

Query: 369 KPNYITIVGVLFACSHAGFVEDG-W------------NHF--KSMKKFYG---------- 403
           +P+  ++V VL AC   G +  G W            N F   ++  FYG          
Sbjct: 206 RPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARS 265

Query: 404 -----IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE---PDAVTWRALLGACKVHRN 455
                ++     +S MI      G  +EA+ L  +M  E   PD      +L +C     
Sbjct: 266 VFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGA 325

Query: 456 TDLAICAAKKILN---LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503
            +L   A+  I     LD    GT ++  ++YA   + D   EV + MR +
Sbjct: 326 LELGDWASNLINGNEFLDNSVLGTALI--DMYAKCGRMDRAWEVFRGMRKK 374


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 262/641 (40%), Positives = 383/641 (59%), Gaps = 27/641 (4%)

Query: 18  ARQ-FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVT 76
           ARQ F     P   S NT+    +   + F           AM     M+  G   D  T
Sbjct: 93  ARQLFDEIPQPDTVSYNTLISGYADARETFA----------AMVLFKRMRKLGFEVDGFT 142

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
            + LI  C  R  V+  K +H   +SGGF+  + + N  +  + K  LL EA  +F  M 
Sbjct: 143 LSGLIAACCDR--VDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMD 200

Query: 137 E-RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILR 192
           E R+ VSW +MI AY   K   KAL L   M+ +G + +MFT ++VL A    D LI  R
Sbjct: 201 ELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGR 260

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGE---LRNAECVFNEMPTRDLVVWNSIIGGFA 249
           Q H  +IK GF  +  V S LID Y+K G    + ++E VF E+ + DLVVWN++I G++
Sbjct: 261 QFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYS 320

Query: 250 QNSDV-DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY---DHD 305
            N ++ +EA+  +++M+R G   D  +   V  AC+ L+      Q+H   +K     + 
Sbjct: 321 MNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNR 380

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           + +NNAL+ +Y K G+L+DA  VF RM + + +S++ MI G AQ+G+  EAL L++ M  
Sbjct: 381 ISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLD 440

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
           S I PN IT V VL AC+H G V++G  +F +MK+ + I+P  EHYSCMIDLLGRAGKL+
Sbjct: 441 SGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLE 500

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           EA + I  MPY+P +V W ALLGAC+ H+N  LA  AA +++ + P     Y++L+N+YA
Sbjct: 501 EAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYA 560

Query: 486 NSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQ 545
           +++KW+E+A VRK+MR + I K+PGCSWIEV K+ H F   D SHP I ++N++L+ +++
Sbjct: 561 DARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMK 620

Query: 546 KLVGVGYAPDTNYVLQDLEGEQKEDS---IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
           K+  VGY  D  + +   +   + D    + +HSEKLA+ FGLMS   G+ + + KNLRI
Sbjct: 621 KMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRI 680

Query: 603 CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           CGDCH   K  + +  + I++RD +R+H F+DG CSCGDYW
Sbjct: 681 CGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/414 (31%), Positives = 215/414 (51%), Gaps = 28/414 (6%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           EP  F  N+++  + K S +  A+ LFD++P+ + VS+ T+IS Y DA+    A+ L   
Sbjct: 71  EPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKR 130

Query: 166 MLREGVRPNMFTYSAVLRA-CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           M + G   + FT S ++ A CD + +++QLHC  +  GF+S   V +A +  Y+K G LR
Sbjct: 131 MRKLGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLR 190

Query: 225 NAECVFNEMPT-RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
            A  VF  M   RD V WNS+I  + Q+ +  +AL LYK M   GF  D  TL SVL A 
Sbjct: 191 EAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNAL 250

Query: 284 TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCG---SLEDAMSVFSRMIQKDVI 338
           T L  L  G Q H  ++K  +  +  + + L+D Y KCG    + D+  VF  ++  D++
Sbjct: 251 TSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLV 310

Query: 339 SWSTMISGLAQN-GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
            W+TMISG + N   S+EA+K F  M+    +P+  + V V  ACS+        +    
Sbjct: 311 VWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNL-------SSPSQ 363

Query: 398 MKKFYGIDPGREHY--------SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            K+ +G+   + H         + +I L  ++G LQ+A  +   MP E +AV++  ++  
Sbjct: 364 CKQIHGLAI-KSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMP-ELNAVSFNCMIKG 421

Query: 450 CKVHRNTDLAICAAKKILN--LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
              H +   A+   +++L+  + P    T++ + +  A+  K DE  E   TM+
Sbjct: 422 YAQHGHGTEALLLYQRMLDSGIAPNKI-TFVAVLSACAHCGKVDEGQEYFNTMK 474


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/610 (38%), Positives = 363/610 (59%), Gaps = 36/610 (5%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL---- 125
           VR   +T + ++    A       K  H  +L  GF    F+ + L++M+ K SL+    
Sbjct: 136 VRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAK 195

Query: 126 ---------------------------EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
                                      EEA+ LF+ M +R+ ++WTTM++ +    +  +
Sbjct: 196 RAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESE 255

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALID 215
           ALE+   M  +G+  + +T+ ++L AC +L  L   +Q+H  II+  ++ +VFV SAL+D
Sbjct: 256 ALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVD 315

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           +Y+K   ++ AE VF  M  ++++ W ++I G+ QN   +EA+ ++  M+R G   D  T
Sbjct: 316 MYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYT 375

Query: 276 LTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
           L SV+ +C  LA LE G Q H   L     H + ++NAL+ +Y KCGS+EDA  +F  M 
Sbjct: 376 LGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMS 435

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393
             D +SW+ ++SG AQ G ++E + LFE M    +KP+ +T +GVL ACS AGFVE G +
Sbjct: 436 FHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRS 495

Query: 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           +F SM+K +GI P  +HY+CMIDL  R+GKL+EA + I +MP  PDA+ W  LL AC++ 
Sbjct: 496 YFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLR 555

Query: 454 RNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSW 513
            + ++   AA+ +L +DPQ+P +Y+LL +++A   +W+EVA++R+ MR R + KEPGCSW
Sbjct: 556 GDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSW 615

Query: 514 IEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQ 573
           I+   ++H F+  D SHP    I + L+ L  K++  GY PD + VL D+    K   + 
Sbjct: 616 IKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVS 675

Query: 574 YHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQ 633
           +HSEKLAI FGL+ + Q   IRI KNLR+C DCH   K  +K+  + I++RD +R+H F 
Sbjct: 676 HHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFS 735

Query: 634 DGNCSCGDYW 643
           DG CSCGD+W
Sbjct: 736 DGVCSCGDFW 745



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 120/383 (31%), Positives = 208/383 (54%), Gaps = 48/383 (12%)

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
           P  F  N LL+      LL + + LF  M +R++VS+  +I+ +     + +A+ + + +
Sbjct: 70  PNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLAL 129

Query: 167 LR--EGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
           L+    VRP+  T S ++ A  +L    + +Q HC I+++GF ++ FV S L+D+YAK+ 
Sbjct: 130 LQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMS 189

Query: 222 ELRNAECVFNE-------------------------------MPTRDLVVWNSIIGGFAQ 250
            + +A+  F+E                               M  RD + W +++ GF Q
Sbjct: 190 LVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQ 249

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLIL 308
           N    EAL +++RM+  G A DQ T  S+L AC  L+ LE G Q+H +++  +YD ++ +
Sbjct: 250 NGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFV 309

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            +AL+DMY KC S++ A +VF RM  K++ISW+ +I G  QNG S+EA+++F  M+   I
Sbjct: 310 GSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGI 369

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY----SCMIDLLGRAGKL 424
            P+  T+  V+ +C++   +E+G   F  +    G+     HY    + ++ L G+ G +
Sbjct: 370 DPDDYTLGSVISSCANLASLEEG-AQFHCLALVSGL----MHYITVSNALVTLYGKCGSI 424

Query: 425 QEAVKLIHEMPYEPDAVTWRALL 447
           ++A +L  EM +  D V+W AL+
Sbjct: 425 EDAHRLFDEMSFH-DQVSWTALV 446



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 160/302 (52%), Gaps = 9/302 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+  G+  D  T+  ++  C A  A+E+ K +H +++   ++   F+ + L++
Sbjct: 256 ALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVD 315

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   ++ A+ +F +M  +N++SWT +I  Y     +++A+ +   M R+G+ P+ +T
Sbjct: 316 MYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYT 375

Query: 178 YSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             +V+ +C +L  L    Q HC  +  G    + V +AL+ +Y K G + +A  +F+EM 
Sbjct: 376 LGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMS 435

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             D V W +++ G+AQ     E ++L+++M   G   D  T   VL AC+    +E G +
Sbjct: 436 FHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKG-R 494

Query: 295 VHVHVLKYDHDLILNN----ALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQ 349
            + H ++ DH ++  +     ++D+Y + G L++A     +M +  D I W T++S    
Sbjct: 495 SYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRL 554

Query: 350 NG 351
            G
Sbjct: 555 RG 556



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 162/396 (40%), Gaps = 76/396 (19%)

Query: 172 RPNMFTYSAVLRACDSLI--ILRQLHCGIIK-VGFESDVFVRSALIDIYAKLGELRNAEC 228
           RP    Y+A+L A       +   LHC I++ +      ++ + L+  Y K G    A  
Sbjct: 3   RPLSSQYAALLSAAARTEPHVAGALHCVILRTLPHPPPTYLLNHLLTAYGKAGRHARARR 62

Query: 229 VFNEMP-------------------------------TRDLVVWNSIIGGFAQNSDVDEA 257
           VF+ MP                                RD+V +N++I GF+      +A
Sbjct: 63  VFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQA 122

Query: 258 LNLYKRMKRAGFAADQS--TLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
           + +Y  + +A  +   S  T+++++ A + L    LG Q H  +L+  +  +  + + L+
Sbjct: 123 VRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLV 182

Query: 314 DMYCK-------------------------------CGSLEDAMSVFSRMIQKDVISWST 342
           DMY K                               C  +E+A  +F  M  +D I+W+T
Sbjct: 183 DMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTT 242

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKF 401
           M++G  QNG   EAL++F  M+   I  +  T   +L AC     +E G   H   ++  
Sbjct: 243 MVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTR 302

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
           Y  D      S ++D+  +   ++ A  +   M  + + ++W AL+     +  ++ A+ 
Sbjct: 303 Y--DDNVFVGSALVDMYSKCRSIKLAETVFRRMTCK-NIISWTALIVGYGQNGCSEEAVR 359

Query: 462 AAKKILNLDPQDPGTYILLSNIY--ANSQKWDEVAE 495
              + +  D  DP  Y L S I   AN    +E A+
Sbjct: 360 VFSE-MQRDGIDPDDYTLGSVISSCANLASLEEGAQ 394


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 250/603 (41%), Positives = 363/603 (60%), Gaps = 40/603 (6%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           +S+++  ++   +    +E+A+     +     + E    N ++  +VK + L +A+ +F
Sbjct: 172 NSISWNGMLAAYVQNGRIEDAR----RLFESKADWELISWNCMMGGYVKRNRLVDARGIF 227

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL---------- 182
           D+MPER+ VSW TMIS Y     N + LE         VR ++FT++A++          
Sbjct: 228 DRMPERDEVSWNTMISGYAQ---NGELLEAQRLFEESPVR-DVFTWTAMVSGYVQNGMLD 283

Query: 183 ---RACDSL----------IILRQLHCGIIKVGFE-------SDVFVRSALIDIYAKLGE 222
              R  D +          II   + C  +    E        +V   + +I  YA+ G+
Sbjct: 284 EARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGD 343

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           +  A   F+ MP RD + W +II G+AQ+   +EAL+L+  MKR G   ++ST TS L  
Sbjct: 344 IAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLST 403

Query: 283 CTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           C  +A LELG QVH  V+K   +    + NALL MYCKCG+++DA  VF  + +K+V+SW
Sbjct: 404 CAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSW 463

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           +TMI+G A++G+ +EAL LFESMK + I P+ +T+VGVL ACSH G V+ G  +F SM +
Sbjct: 464 NTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQ 523

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            YGI    +HY+CMIDLLGRAG+L +A  L+  MP+EPDA TW ALLGA ++H NT+L  
Sbjct: 524 DYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGE 583

Query: 461 CAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQI 520
            AAK I  ++P + G Y+LLSN+YA S +W +V  +R  MR RG+ K PG SW+EV  +I
Sbjct: 584 KAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKI 643

Query: 521 HAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLA 580
           H F V DS HP+ D+I   L+ L  K+   GY   T  VL D+E E+K   ++YHSEKLA
Sbjct: 644 HTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLA 703

Query: 581 IVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
           + FG++++  G+ IR+ KNLR+C DCH   K  +K+  + I++RD  R+HHF  G CSCG
Sbjct: 704 VAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCG 763

Query: 641 DYW 643
           DYW
Sbjct: 764 DYW 766



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 191/422 (45%), Gaps = 64/422 (15%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV--NILLNMHVKFSLLEEA 128
           R  S+++  +I  CL+      A+ +   +      P   LV  N++++  V++  L  A
Sbjct: 77  RRSSISWNAMISGCLSNDKFYLARQLFEKM------PTRDLVSWNVMISGCVRYRNLRAA 130

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           ++LFDQMPER+VVSW  M+S Y       +A E+   M  +    N  +++ +L A    
Sbjct: 131 RLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAA---- 182

Query: 189 IILRQLHCGIIKVG---FES----DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
                +  G I+     FES    ++   + ++  Y K   L +A  +F+ MP RD V W
Sbjct: 183 ----YVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSW 238

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV------ 295
           N++I G+AQN ++ EA  L++         D  T T+++       +L+   +V      
Sbjct: 239 NTMISGYAQNGELLEAQRLFEESP----VRDVFTWTAMVSGYVQNGMLDEARRVFDGMPE 294

Query: 296 ------------HVHVLKYD-----------HDLILNNALLDMYCKCGSLEDAMSVFSRM 332
                       +V   + D            ++   N ++  Y + G +  A + F RM
Sbjct: 295 KNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRM 354

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
            Q+D ISW+ +I+G AQ+GY +EAL LF  MK    + N  T    L  C+    +E G 
Sbjct: 355 PQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGK 414

Query: 393 N-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
             H + +K   G++ G    + ++ +  + G + +A  ++ E   E + V+W  ++    
Sbjct: 415 QVHGRVVKA--GLESGCYVGNALLVMYCKCGNIDDAY-IVFEGIEEKEVVSWNTMIAGYA 471

Query: 452 VH 453
            H
Sbjct: 472 RH 473



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 183/426 (42%), Gaps = 59/426 (13%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           NI +  H++    + A  LF+ MP R+ +SW  MIS       NDK   L   +  +   
Sbjct: 53  NIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLS---NDK-FYLARQLFEKMPT 108

Query: 173 PNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
            ++ +++ ++  C     LR       ++  E DV   +A++  YA+ G ++ A+ +F+E
Sbjct: 109 RDLVSWNVMISGCVRYRNLRAARLLFDQMP-ERDVVSWNAMLSGYAQNGYVKEAKEIFDE 167

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           MP ++ + WN ++  + QN  +++A  L++                              
Sbjct: 168 MPCKNSISWNGMLAAYVQNGRIEDARRLFES----------------------------- 198

Query: 293 TQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
                   K D +LI  N ++  Y K   L DA  +F RM ++D +SW+TMISG AQNG 
Sbjct: 199 --------KADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGE 250

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
             EA +LFE   V  +     T   ++      G +++    F  M +   +      ++
Sbjct: 251 LLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVS-----WN 301

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
            +I    +  ++ +A +L   MP + +  +W  ++      +N D+A   A+   +  PQ
Sbjct: 302 AIIAGYVQCKRMDQARELFEAMPCQ-NVSSWNTMITG--YAQNGDIA--QARNFFDRMPQ 356

Query: 473 -DPGTYILLSNIYANSQKWDEVAEVRKTMRARG--ITKEPGCSWIEVNKQIHAFNVADSS 529
            D  ++  +   YA S   +E   +   M+  G  + +    S +    +I A  +    
Sbjct: 357 RDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQV 416

Query: 530 HPQIDK 535
           H ++ K
Sbjct: 417 HGRVVK 422



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 21/195 (10%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  G R +  T+   +  C    A+E  K VH  V+  G E   ++ N LL M+ K   
Sbjct: 385 MKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGN 444

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +++A ++F+ + E+ VVSW TMI+ Y       +AL L   M + G+ P+  T   VL A
Sbjct: 445 IDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSA 504

Query: 185 CDSLIILRQLHCGIIKVGFE------SDVFVR------SALIDIYAKLGELRNAECVFNE 232
           C         H G++  G E       D  +       + +ID+  + G L +A+ +   
Sbjct: 505 CS--------HTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKN 556

Query: 233 MPTR-DLVVWNSIIG 246
           MP   D   W +++G
Sbjct: 557 MPFEPDAATWGALLG 571



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 14/152 (9%)

Query: 300 LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
           L  D D++  N  +  + + G  + A+ +F+ M ++  ISW+ MISG   N     A +L
Sbjct: 43  LATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQL 102

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE--HYSCMIDL 417
           FE M    +    + I G +            + + ++ +  +   P R+   ++ M+  
Sbjct: 103 FEKMPTRDLVSWNVMISGCVR-----------YRNLRAARLLFDQMPERDVVSWNAMLSG 151

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
             + G ++EA ++  EMP + ++++W  +L A
Sbjct: 152 YAQNGYVKEAKEIFDEMPCK-NSISWNGMLAA 182


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/638 (37%), Positives = 375/638 (58%), Gaps = 8/638 (1%)

Query: 13  KPSSQARQFSLTITPPVASCNTITRN-SSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVR 71
           +P  +     L +        T  R  SS L     +  + +    A++    ++ +G  
Sbjct: 68  RPKPKPSTIELNVGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELFEILELNGAY 127

Query: 72  -ADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
             DS TY  L+  C+   ++   K V N++++ G +P+ +L N +L MHVK  ++ +A+ 
Sbjct: 128 DMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARR 187

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           LFD+MPE+N++SW T+I    DA    +A  L + M +         +  ++RA   L +
Sbjct: 188 LFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMIRASAGLGL 247

Query: 191 L---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           +   RQLH   +K G   DVFV  ALID+Y+K G + +A+CVF++MP +  V WNSII G
Sbjct: 248 IFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAG 307

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--D 305
           +A +   +EAL++Y  M+ +G   D  T + ++R C  LA LE   Q H  ++++    D
Sbjct: 308 YALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLD 367

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           ++ N AL+D+Y K G +EDA  VF  M  K+VISW+ +I+G   +G   EA+++FE M  
Sbjct: 368 IVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLH 427

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
             + PN++T + VL ACS++G  + GW  F+SM + + I P   HY+CMI+LLGR G L 
Sbjct: 428 EGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLD 487

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           EA  LI + P++P    W ALL AC+VH+N +L   AA+K+  + P+    Y++L NIY 
Sbjct: 488 EAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYN 547

Query: 486 NSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQ 545
            S + +E A V +T++ RG+   P CSWIE+ KQ + F   D  H Q  +I + L  L+ 
Sbjct: 548 XSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELML 607

Query: 546 KLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGD 605
           ++   GY P   ++L D++ EQ+E  + YHSEKLAI FGL++ +    ++I ++ RICGD
Sbjct: 608 EISKHGYVPQXKFLLPDVD-EQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRICGD 666

Query: 606 CHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           CH+  KL A +  + IV+RD  R+HHF+DG+CSCGDYW
Sbjct: 667 CHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/605 (39%), Positives = 368/605 (60%), Gaps = 44/605 (7%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D+V++  ++   +    ++EA+     +     E +    N L+  +V+ S +EEAQ +F
Sbjct: 230 DAVSWNGMLAAYVRNGRIQEAR----ELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMF 285

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP--NMFTYSAVL-------- 182
           ++MP+R+VVSW TM+S Y  A+  D A    +F     V P  ++FT++A++        
Sbjct: 286 NKMPQRDVVSWNTMVSGY--ARRGDMAEARRLF----DVAPIRDVFTWTAIVSGYAQNGM 339

Query: 183 -----RACDSLIILRQLHCGIIKVGFESDVFVRSA-----------------LIDIYAKL 220
                R  D++     +    +   +     +  A                 ++  YA+ 
Sbjct: 340 LEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQA 399

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           G L  A  +F  MP +D V W +++  ++Q    +E L L+K M R G   ++S    VL
Sbjct: 400 GMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVL 459

Query: 281 RACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
             C  +A LE G Q+H  ++K  Y     + NALL MY KCGS+E+A S F  M ++DV+
Sbjct: 460 STCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVV 519

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
           SW+TMI+G A++G+ +EAL++F++M+ +  KP+ IT+VGVL ACSH+G VE G ++F SM
Sbjct: 520 SWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSM 579

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
            + +G+    EHY+CMIDLLGRAG+L EAV L+ +MP+EPD+  W ALLGA ++HRN++L
Sbjct: 580 HRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSEL 639

Query: 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNK 518
              AA+KI  L+P++ G Y+LLSNIYA+S KW +V ++R  M  RG+ K PG SWIEV  
Sbjct: 640 GRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQN 699

Query: 519 QIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEK 578
           ++H F+V DS HP+ + I   L+ L  ++   GY   T+ VL D+E E+KE  ++YHSEK
Sbjct: 700 KVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEK 759

Query: 579 LAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCS 638
           LA+ +G++ +  G+ IR+ KNLR+C DCHT  K  + +E + I++RD  R+HHF+DG+CS
Sbjct: 760 LAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFKCISAIEGRLIILRDSNRFHHFRDGSCS 819

Query: 639 CGDYW 643
           CGDYW
Sbjct: 820 CGDYW 824



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 163/382 (42%), Gaps = 50/382 (13%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           DSV+Y  +I    + HA      +  H      E +    N +L  +V+   ++EA+ LF
Sbjct: 199 DSVSYNVMI----SSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELF 254

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192
           D   E + +SW  +++ Y      ++A ++   M +  V       S   R  D     R
Sbjct: 255 DSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARR 314

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
                 I+     DVF  +A++  YA+ G L  A+ VF+ MP ++ V WN+++  + Q  
Sbjct: 315 LFDVAPIR-----DVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRR 369

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNAL 312
            ++EA  L+  M                  C  +A                      N +
Sbjct: 370 MMEEAKELFDAMP-----------------CRNVASW--------------------NTM 392

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           L  Y + G L++A ++F  M QKD +SW+ M++  +Q G+S+E L+LF+ M       N 
Sbjct: 393 LTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNR 452

Query: 373 ITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
                VL  C+    +E G   H + +K  YG+  G    + ++ +  + G ++EA    
Sbjct: 453 SAFACVLSTCADIAALECGMQLHSRLIKAGYGV--GCFVGNALLAMYFKCGSMEEAHSAF 510

Query: 432 HEMPYEPDAVTWRALLGACKVH 453
            EM  E D V+W  ++     H
Sbjct: 511 EEME-ERDVVSWNTMIAGYARH 531



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 162/378 (42%), Gaps = 79/378 (20%)

Query: 101 LSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKAL 160
           ++G  + E    N  +  H++   + +A+ LF  MP R+  ++ TM++ Y     N +  
Sbjct: 99  ITGKPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYA---ANGRLP 155

Query: 161 ELLIFMLREGVRPNMFTYSAVLRA---CDSLIILRQLHCGIIKVGFESDVFVRSALIDIY 217
           + L F  R   RP+ F+Y+ +L A     SL  +R L   +       D    + +I  +
Sbjct: 156 QALSF-FRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPV----KDSVSYNVMISSH 210

Query: 218 AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT 277
           A  G +  A   F+  P +D V WN ++  + +N  + EA  L+          D  T  
Sbjct: 211 ANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELF----------DSRT-- 258

Query: 278 SVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
                                    + D I  NAL+  Y +   +E+A  +F++M Q+DV
Sbjct: 259 -------------------------EWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDV 293

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           +SW+TM+SG A+ G   EA +LF+   V+ I+ +  T   ++   +  G +E+    F +
Sbjct: 294 VSWNTMVSGYARRGDMAEARRLFD---VAPIR-DVFTWTAIVSGYAQNGMLEEAKRVFDA 349

Query: 398 M------------------------KKFYGIDPGRE--HYSCMIDLLGRAGKLQEAVKLI 431
           M                        K+ +   P R    ++ M+    +AG L EA  + 
Sbjct: 350 MPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIF 409

Query: 432 HEMPYEPDAVTWRALLGA 449
             MP + DAV+W A+L A
Sbjct: 410 GMMP-QKDAVSWAAMLAA 426



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 139/317 (43%), Gaps = 46/317 (14%)

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           +V  R+  I  + + G + +AE +F  MP R    +N+++ G+A N  + +AL+ ++ + 
Sbjct: 106 EVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP 165

Query: 266 RAGFAADQSTLTSVLRACTGLALLE--------------------------LGTQVHVHV 299
           R   +   +TL   L   + LA +                           +    H   
Sbjct: 166 RPD-SFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFD 224

Query: 300 LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
           L  + D +  N +L  Y + G +++A  +F    + D ISW+ +++G  Q    +EA K+
Sbjct: 225 LAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKM 284

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F  M   R   ++ T+V        +G+   G       ++ + + P R+ ++    + G
Sbjct: 285 FNKMP-QRDVVSWNTMV--------SGYARRG--DMAEARRLFDVAPIRDVFTWTAIVSG 333

Query: 420 RA--GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP-QDPGT 476
            A  G L+EA ++   MP + +AV+W A++ A    R  +     AK++ +  P ++  +
Sbjct: 334 YAQNGMLEEAKRVFDAMP-DKNAVSWNAMMAAYVQRRMME----EAKELFDAMPCRNVAS 388

Query: 477 YILLSNIYANSQKWDEV 493
           +  +   YA +   DE 
Sbjct: 389 WNTMLTGYAQAGMLDEA 405



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 104/225 (46%), Gaps = 39/225 (17%)

Query: 301 KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
           K D ++I  N  +  + + G + DA  +F+ M ++   +++TM++G A NG   +AL  F
Sbjct: 102 KPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFF 161

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM---------------------- 398
            S+     +P+  +   +L A   +  + D    F  M                      
Sbjct: 162 RSIP----RPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVS 217

Query: 399 --KKFYGIDPGRE--HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR 454
             + ++ + P ++   ++ M+    R G++QEA +L  +   E DA++W AL+ A  V R
Sbjct: 218 LARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELF-DSRTEWDAISWNALM-AGYVQR 275

Query: 455 NTDLAICAAKKILNLDPQ-DPGTYILLSNIYANSQKWDEVAEVRK 498
           +    I  A+K+ N  PQ D  ++  + + YA   +  ++AE R+
Sbjct: 276 SQ---IEEAQKMFNKMPQRDVVSWNTMVSGYA---RRGDMAEARR 314


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/656 (37%), Positives = 394/656 (60%), Gaps = 25/656 (3%)

Query: 5   AVSKLKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHA 64
           +VS+L  T+  ++ +  +      V   +  + NS  ++ D  R     +  RA  +M  
Sbjct: 12  SVSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNS--VIADLARSGDSAEALRAFSSMRK 69

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           +  +  R+   ++   IK C +   +   K  H      G++ + F+ + L+ M+     
Sbjct: 70  LSLYPTRS---SFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGK 126

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN-----MFTYS 179
           LE+A+ +FD++P+RN+VSWT+MI  Y    +N  AL+ +       +  N     MF  S
Sbjct: 127 LEDARKVFDEIPKRNIVSWTSMIRGY---DLNGNALDAVSLFKDLLIEENDDDATMFLDS 183

Query: 180 ----AVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE--LRNAECVF 230
               +V+ AC  +    +   +H  +IK GF+  V V + L+D YAK GE  +  A  +F
Sbjct: 184 MGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIF 243

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALL 289
           +++  +D V +NSI+  +AQ+   +EA ++++R+ K      +  TL++VL A +    L
Sbjct: 244 DQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGAL 303

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
            +G  +H  V++   + D+I+  +++DMYCKCG +E A   F RM  K+V SW+ MI+G 
Sbjct: 304 RIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGY 363

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
             +G++ +AL+LF +M  S ++PNYIT V VL ACSHAG  + GW+ F +MK  +G++PG
Sbjct: 364 GMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPG 423

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            EHY CM+DLLGRAG LQ+A  LI +M  EPD++ W +LL AC++H+N +LA  +  ++ 
Sbjct: 424 LEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLF 483

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
            LDP + G Y+LLS+IYA+S +W +V  VR TM+ RG+ K PG S +E+N ++H F + D
Sbjct: 484 ELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGD 543

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
             HPQ +KI + L  L +KL+  GY  +T+ V  D++ E+KE +++ HSEKLAI FG+M+
Sbjct: 544 EEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMN 603

Query: 588 LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
              G T+ + KNLR+C DCH   KL +K+ ++  V+RD  R+HHF+DG CSCGDYW
Sbjct: 604 TVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGFCSCGDYW 659


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/584 (38%), Positives = 353/584 (60%), Gaps = 12/584 (2%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEA----KLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           G+  D  T   +++ C    ++EE+    + VH   L  G   ++F+   L++++ K   
Sbjct: 393 GLLPDQFTITSVLRAC---SSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGK 449

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +EEA++LF      ++ SW  M+  +  +    +AL L   M   G + +  T++   +A
Sbjct: 450 MEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKA 509

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
              L+ L   +Q+H  +IK+ F  D+FV S ++D+Y K GE+++A  VFN++P+ D V W
Sbjct: 510 AGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAW 569

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            ++I G  +N + ++AL  Y +M+ AG   D+ T  ++++AC+ L  LE G Q+H +++K
Sbjct: 570 TTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMK 629

Query: 302 YD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
            +   D  +  +L+DMY KCG++EDA  +F RM  + V  W+ MI GLAQ+G ++EAL  
Sbjct: 630 LNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNF 689

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F  MK   + P+ +T +GVL ACSH+G   D + +F SM+K YG++P  EHYSC++D L 
Sbjct: 690 FNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALS 749

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           RAG +QEA K++  MP+E  A  +R LL AC+V  + +     A+K+  +DP D   Y+L
Sbjct: 750 RAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVL 809

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LSNIYA + +W+     R  M+   + KEPG SWI++  ++H F   D SH + D I   
Sbjct: 810 LSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNK 869

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
           ++++++++   GY PDT + L D+E E KE ++ YHSEKLAI +GLM      T+R+ KN
Sbjct: 870 VEYVMKRIKEEGYVPDTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKN 929

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           LR+CGDCH   K  + +  + IV+RD  R+HHF+ G CSCGDYW
Sbjct: 930 LRVCGDCHNAIKYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/398 (32%), Positives = 219/398 (55%), Gaps = 10/398 (2%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V  DS+TY  ++    + + +E  K +H  V+  G++    + N  +NM+VK   +  A+
Sbjct: 293 VPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYAR 352

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL- 188
            +F QM E +++SW T+IS    + + + +L L I +LR G+ P+ FT ++VLRAC SL 
Sbjct: 353 RMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLE 412

Query: 189 ---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
               + RQ+H   +K G   D FV +ALID+Y+K G++  AE +F+     DL  WN+++
Sbjct: 413 ESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMM 472

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YD 303
            GF  + +  EAL L+  M   G  ADQ T  +  +A   L  L+ G Q+H  V+K  + 
Sbjct: 473 HGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFH 532

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
           +DL + + +LDMY KCG ++ A  VF+++   D ++W+T+ISG  +NG  ++AL  +  M
Sbjct: 533 YDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQM 592

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           +++ ++P+  T   ++ ACS    +E G   H   MK     DP     + ++D+  + G
Sbjct: 593 RLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFV--MTSLVDMYAKCG 650

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            +++A  L   M     A+ W A++     H N + A+
Sbjct: 651 NIEDAYGLFRRMNTRSVAL-WNAMIVGLAQHGNAEEAL 687



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 126/493 (25%), Positives = 224/493 (45%), Gaps = 58/493 (11%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKC--CLARHAVEEAKLVHNHVLSGGFE 106
           F    +   A++    M   G +AD +T+A   K   CL R  +++ K +H  V+   F 
Sbjct: 475 FTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVR--LQQGKQIHAVVIKMRFH 532

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
            + F+++ +L+M++K   ++ A+ +F+Q+P  + V+WTT+IS   +    ++AL     M
Sbjct: 533 YDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQM 592

Query: 167 LREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
              GV+P+ +T++ +++AC  L  L   +Q+H  I+K+    D FV ++L+D+YAK G +
Sbjct: 593 RLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNI 652

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
            +A  +F  M TR + +WN++I G AQ+ + +EALN +  MK  G   D+ T   VL AC
Sbjct: 653 EDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSAC 712

Query: 284 TGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           +   L                         D Y    S++    V     + ++  +S +
Sbjct: 713 SHSGLTS-----------------------DAYKNFDSMQKTYGV-----EPEIEHYSCL 744

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           +  L++ G+ QEA K+  SM        Y T+   L AC   G  E G    +  +K + 
Sbjct: 745 VDALSRAGHIQEAEKVVSSMPFEASATMYRTL---LNACRVQGDKETGE---RVAEKLFT 798

Query: 404 IDPG-REHYSCMIDLLGRAGKLQEAVKLIHEMPY-----EPDAVTW-------RALLGAC 450
           +DP     Y  + ++   A + + AV   + M       EP   +W          +   
Sbjct: 799 MDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEP-GFSWIDMKNKVHLFVAGD 857

Query: 451 KVHRNTDLAICAAKKILNLDPQD---PGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507
           + H  TDL     + ++    ++   P T   L +I    ++        K   A G+ K
Sbjct: 858 RSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDIEEEDKESALSYHSEKLAIAYGLMK 917

Query: 508 EPGCSWIEVNKQI 520
            P  + + V K +
Sbjct: 918 TPPSTTLRVIKNL 930



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 192/398 (48%), Gaps = 59/398 (14%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           T + L K CL   +   ++ +  + +  G + + F+   L+N++ KF  + EA+VLFD+M
Sbjct: 124 TLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRM 183

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLH 195
           P R+VV W  M+ AY +    D+ L L     R G+RP+  +   +L             
Sbjct: 184 PVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTIL------------- 230

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRN-AECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
              + VG +  VF R        +L ++R  A  +F      D+ VWN  +  + Q  + 
Sbjct: 231 ---MGVG-KKTVFER--------ELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEG 278

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NAL 312
            EA++ ++ M ++    D  T   +L     L  LELG Q+H  V+++  D  ++  N+ 
Sbjct: 279 WEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSA 338

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           ++MY K GS+  A  +F +M + D+ISW+T+ISG A++G  + +L+LF  +  S + P+ 
Sbjct: 339 INMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQ 398

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC---------------MIDL 417
            TI  VL ACS             S+++ Y +  GR+ ++C               +ID+
Sbjct: 399 FTITSVLRACS-------------SLEESYCV--GRQVHTCALKAGIVLDSFVSTALIDV 443

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN 455
             + GK++EA  L H      D  +W A++    V  N
Sbjct: 444 YSKGGKMEEAELLFHNQD-GFDLASWNAMMHGFTVSDN 480



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 177/410 (43%), Gaps = 68/410 (16%)

Query: 87  RHAVEEAKLV-----HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE--RN 139
           RHA+ ++ L+     H  +++ G  P+ ++ N L+ M+ K   L  A+ LFD  P+  R+
Sbjct: 21  RHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRD 80

Query: 140 VVSWTTMISAYC------DAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLII 190
           +V++  +++AY       D +   +A  +   + +  +     T S + + C    S   
Sbjct: 81  LVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSA 140

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
              L    +K+G + DVFV  AL++IYAK   +R A  +F+ MP RD+V+WN ++  + +
Sbjct: 141 SEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVE 200

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNN 310
               DE L L+    R+G   D  ++ ++L       + E   +    V  Y   L +  
Sbjct: 201 MGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELE---QVRAYATKLFV-- 255

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
                   C    D            V  W+  +S   Q G   EA+  F  M  SR+  
Sbjct: 256 --------CDDDSD------------VTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPC 295

Query: 371 N---YITIVGVLFACS--------HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           +   YI I+ V+ + +        H   V  GW+ F S+             +  I++  
Sbjct: 296 DSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVA------------NSAINMYV 343

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
           +AG +  A ++  +M  E D ++W  ++  C     + L  C+ +  ++L
Sbjct: 344 KAGSVNYARRMFGQMK-EVDLISWNTVISGCA---RSGLEECSLRLFIDL 389


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/654 (38%), Positives = 372/654 (56%), Gaps = 55/654 (8%)

Query: 42   LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLAR-HAVEEAKLVHNHV 100
            L+  F R     D+   +     MQ  GV  +  T + ++K C +  +     K +H  +
Sbjct: 358  LISGFARIGLSADV---LGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWI 414

Query: 101  LSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY---------- 150
            L  G + +  L N +L+ +VK      A+ LF  M E++ VSW  M+S+Y          
Sbjct: 415  LRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSV 474

Query: 151  -----------------CDAKMNDK----ALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
                              D  M +     ALELL  M+  G   N  T+S  L    SL 
Sbjct: 475  DLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLS 534

Query: 190  IL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR---------- 236
            +L   +Q+H  ++KVG   D FVR++LID+Y K GE+  A  +F  +P            
Sbjct: 535  VLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESC 594

Query: 237  -DLVV----WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
             D VV    W+S++ G+ QN   ++AL  +  M  +    D+ TLTSV+ AC    +LEL
Sbjct: 595  DDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLEL 654

Query: 292  GTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
            G QVH ++ K  H  D+ L ++++DMY KCGSL DA  +F++   ++V+ W++MISG A 
Sbjct: 655  GRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCAL 714

Query: 350  NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
            +G  +EA++LFE M    I PN ++ VGVL ACSHAG +E+G  +F+ M++ YGI PG E
Sbjct: 715  HGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAE 774

Query: 410  HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
            H++CM+DL GRAG+L E  + IH       +  WR+ L +C+VH+N ++ I   KK+L L
Sbjct: 775  HFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLEL 834

Query: 470  DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
            +P D G YIL S+I A   +W+E A++R  M+ RG+ K P  SWI++  Q+H+F + D S
Sbjct: 835  EPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRS 894

Query: 530  HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
            HPQ  KI  +L  LI +L  +GY+ D   V+QD+E EQ++  + YHSEKLAI +G++S  
Sbjct: 895  HPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIISTA 954

Query: 590  QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             G  IR+ KNLR+C DCH F K  +++  + I+IRD  R+HHF+ G+CSC DYW
Sbjct: 955  PGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/394 (29%), Positives = 199/394 (50%), Gaps = 56/394 (14%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N LLN++ K   LE+A  +F+++P+ +V SWT +IS +    ++   L L   M  +GV 
Sbjct: 325 NHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVC 384

Query: 173 PNMFTYSAVLRACDSLI----ILRQLHCGIIKVGFESDVFVRSALIDIYAK--------- 219
           PN FT S VL++C S +    I + +H  I++ G + D  + ++++D Y K         
Sbjct: 385 PNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEK 444

Query: 220 ----------------------LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEA 257
                                 +G+++ +  +F ++P +D   WN++I G  +N     A
Sbjct: 445 LFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVA 504

Query: 258 LNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDM 315
           L L  +M  AG A ++ T +  L   + L++L LG Q+H  VLK     D  + N+L+DM
Sbjct: 505 LELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDM 564

Query: 316 YCKCGSLEDAMSVFSRMIQK---------------DVISWSTMISGLAQNGYSQEALKLF 360
           YCKCG +E A  +F  + Q+               + +SWS+M+SG  QNG  ++ALK F
Sbjct: 565 YCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTF 624

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF-YGIDPGREHYSCMIDLLG 419
             M  S+++ +  T+  V+ AC+ AG +E G      ++K  +G+D      S +ID+  
Sbjct: 625 SFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLG--SSIIDMYV 682

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           + G L +A  LI     + + V W +++  C +H
Sbjct: 683 KCGSLNDA-WLIFNQAKDRNVVLWTSMISGCALH 715



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 32/184 (17%)

Query: 295 VHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
           +H  ++K     I  N LL++Y K  +LE A  +F  + Q DV SW+ +ISG A+ G S 
Sbjct: 310 LHAKLIKNGCVGIRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSA 369

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACS------------HAGFVEDGWNH-------- 394
           + L LF  M+   + PN  T+  VL +CS            H   + +G +         
Sbjct: 370 DVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSI 429

Query: 395 ---------FKSMKKFYGIDPGRE--HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
                    F   +K +G+   ++   ++ M+    + G +Q++V L  ++P + DA +W
Sbjct: 430 LDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGK-DAASW 488

Query: 444 RALL 447
             ++
Sbjct: 489 NTMI 492


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/664 (35%), Positives = 380/664 (57%), Gaps = 51/664 (7%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAEL 80
           F    +PPV +  ++ R           F  Q    +A+ +   M+  G   D   +  +
Sbjct: 62  FKTLKSPPVLAWKSVIRC----------FTDQSLFSKALASFVEMRASGRCPDHNVFPSV 111

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF----------SLLEE--- 127
           +K C     +   + VH  ++  G + + +  N L+NM+ K           ++ +E   
Sbjct: 112 LKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQ 171

Query: 128 -----------------------AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
                                   + +F+ MP ++VVS+ T+I+ Y  + M + AL ++ 
Sbjct: 172 RTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVR 231

Query: 165 FMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
            M    ++P+ FT S+VL      + +   +++H  +I+ G +SDV++ S+L+D+YAK  
Sbjct: 232 EMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSA 291

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
            + ++E VF+ +  RD + WNS++ G+ QN   +EAL L+++M  A         +SV+ 
Sbjct: 292 RIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIP 351

Query: 282 ACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
           AC  LA L LG Q+H +VL+  +  ++ + +AL+DMY KCG+++ A  +F RM   D +S
Sbjct: 352 ACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS 411

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           W+ +I G A +G+  EA+ LFE MK   +KPN +  V VL ACSH G V++ W +F SM 
Sbjct: 412 WTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMT 471

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
           K YG++   EHY+ + DLLGRAGKL+EA   I +M  EP    W  LL +C VH+N +LA
Sbjct: 472 KVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELA 531

Query: 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQ 519
              A+KI  +D ++ G Y+L+ N+YA++ +W E+A++R  MR +G+ K+P CSWIE+  +
Sbjct: 532 EKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNK 591

Query: 520 IHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKL 579
            H F   D SHP +DKIN+ LK +++++   GY  DT+ VL D++ E K + +  HSE+L
Sbjct: 592 THGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERL 651

Query: 580 AIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
           A+ FG+++   G TIR+ KN+RIC DCH   K  +K+  + I++RD  R+HHF  GNCSC
Sbjct: 652 AVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSC 711

Query: 640 GDYW 643
           GDYW
Sbjct: 712 GDYW 715



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 195/383 (50%), Gaps = 45/383 (11%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           +I+++++    LL EA +LF  +    V++W ++I  + D  +  KAL   + M   G  
Sbjct: 43  SIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRC 102

Query: 173 PNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKL---GELRNA 226
           P+   + +VL++C  ++ LR    +H  I+++G + D++  +AL+++YAKL   G   + 
Sbjct: 103 PDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISV 162

Query: 227 ECVFNEMPTR---------------------------------DLVVWNSIIGGFAQNSD 253
             VF+EMP R                                 D+V +N+II G+AQ+  
Sbjct: 163 GNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGM 222

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNA 311
            ++AL + + M       D  TL+SVL   +    +  G ++H +V++   D D+ + ++
Sbjct: 223 YEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSS 282

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+DMY K   +ED+  VFSR+  +D ISW+++++G  QNG   EAL+LF  M  +++KP 
Sbjct: 283 LVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPG 342

Query: 372 YITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
            +    V+ AC+H   +  G   H   ++  +G +      S ++D+  + G ++ A K+
Sbjct: 343 AVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIA--SALVDMYSKCGNIKAARKI 400

Query: 431 IHEMPYEPDAVTWRALLGACKVH 453
              M    D V+W A++    +H
Sbjct: 401 FDRMNV-LDEVSWTAIIMGHALH 422



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 138/297 (46%), Gaps = 43/297 (14%)

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           +QLH   I+    S     S +I IY  L  L  A  +F  + +  ++ W S+I  F   
Sbjct: 25  KQLHAQFIRTQSLSHTSA-SIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQ 83

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILN 309
           S   +AL  +  M+ +G   D +   SVL++CT +  L  G  VH  +++   D DL   
Sbjct: 84  SLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTG 143

Query: 310 NALLDMYCK---------CGSLEDAMS---------------------------VFSRMI 333
           NAL++MY K          G++ D M                            VF  M 
Sbjct: 144 NALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMP 203

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS-HAGFVEDGW 392
           +KDV+S++T+I+G AQ+G  ++AL++   M  + +KP+  T+  VL   S +   ++   
Sbjct: 204 RKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKE 263

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            H   ++K  GID      S ++D+  ++ +++++ ++   + Y  D ++W +L+  
Sbjct: 264 IHGYVIRK--GIDSDVYIGSSLVDMYAKSARIEDSERVFSRL-YCRDGISWNSLVAG 317


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/601 (39%), Positives = 373/601 (62%), Gaps = 7/601 (1%)

Query: 50  CY-QRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY + D P  A +    M+  G + +      ++K  +   +V   K +H   +    + 
Sbjct: 237 CYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDT 296

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           E  +   LL+M+ K   +++A++ F+ +P  +V+  + MIS Y  +  N++A EL + ++
Sbjct: 297 EPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLM 356

Query: 168 REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           R  V PN ++ S+VL+AC +++ L   +Q+H   IK+G ESD+FV +AL+D YAK  ++ 
Sbjct: 357 RSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMD 416

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
           ++  +F+ +   + V WN+I+ GF+Q+   +EAL+++  M+ A     Q T +SVLRAC 
Sbjct: 417 SSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACA 476

Query: 285 GLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
             A +    Q+H  + K  +++D ++ N+L+D Y KCG + DA+ VF  ++++D+ISW+ 
Sbjct: 477 STASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNA 536

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           +ISG A +G + +AL+LF+ M  S ++ N IT V +L  CS  G V  G + F SM+  +
Sbjct: 537 IISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDH 596

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           GI P  EHY+C++ LLGRAG+L +A++ I ++P  P A+ WRALL +C +H+N  L   +
Sbjct: 597 GIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFS 656

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A+KIL ++PQD  TY+LLSN+YA +   D+VA +RK+MR  G+ K PG SW+E+  +IHA
Sbjct: 657 AEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHA 716

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F+V    HP +  IN  L+ L  K    GY PD N VL D++ EQK   +  HSE+LA+ 
Sbjct: 717 FSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALA 776

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           +GL+    G  IRI KNLR C DCHT   + +K+  + I++RD  R+HHF+DG CSCGDY
Sbjct: 777 YGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDY 836

Query: 643 W 643
           W
Sbjct: 837 W 837



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 219/423 (51%), Gaps = 9/423 (2%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN  S +        + D   A      ++  G   +      ++K  +A  A   A  V
Sbjct: 125 RNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGV 184

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H+     G +   F+ + L++ +   SL+ +A+ +F+ +  ++ V WT M+S Y +    
Sbjct: 185 HSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCP 244

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSAL 213
           + A  +   M   G +PN F  ++VL+A     S+++ + +H   IK   +++  V  AL
Sbjct: 245 ENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGAL 304

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           +D+YAK G++++A   F  +P  D+++ + +I  +AQ++  ++A  L+ R+ R+    ++
Sbjct: 305 LDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNE 364

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSR 331
            +L+SVL+ACT +  L+ G Q+H H +K  H  DL + NAL+D Y KC  ++ ++ +FS 
Sbjct: 365 YSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSS 424

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC-SHAGFVED 390
           +   + +SW+T++ G +Q+G  +EAL +F  M+ +++    +T   VL AC S A     
Sbjct: 425 LRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHA 484

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G  H    K  +  D    +   +ID   + G +++A+K+   +  E D ++W A++   
Sbjct: 485 GQIHCSIEKSTFNNDTVIGN--SLIDTYAKCGYIRDALKVFQHL-MERDIISWNAIISGY 541

Query: 451 KVH 453
            +H
Sbjct: 542 ALH 544



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 107/319 (33%), Positives = 171/319 (53%), Gaps = 7/319 (2%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVL--SGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           DS   A  ++ C+AR      + VH HV+   G    + F  N+LLNM+ K   L  A+ 
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR---ACDS 187
           LFD+MPERN+VS+ T++ A+      + A  L   +  EG   N F  + +L+   A D+
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDA 177

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
             +   +H    K+G + + FV S LID Y+    + +AE VFN +  +D VVW +++  
Sbjct: 178 AGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSC 237

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHD 305
           +++N   + A  ++ +M+ +G   +   LTSVL+A   L  + LG  +H   +K   D +
Sbjct: 238 YSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTE 297

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
             +  ALLDMY KCG ++DA   F  +   DVI  S MIS  AQ+  +++A +LF  +  
Sbjct: 298 PHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMR 357

Query: 366 SRIKPNYITIVGVLFACSH 384
           S + PN  ++  VL AC++
Sbjct: 358 SSVLPNEYSLSSVLQACTN 376


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/595 (37%), Positives = 364/595 (61%), Gaps = 6/595 (1%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
              A++    M+  G       ++  I+ C +  ++E  K +H   L  G   E F+ + 
Sbjct: 22  FSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSN 81

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           L +M+ K   + +A  +F++MP ++ VSWT MI  Y      ++AL     M+ E V  +
Sbjct: 82  LEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTID 141

Query: 175 MFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
                + L AC +L      R +H  ++K+GFESD+FV +AL D+Y+K G++ +A  VF 
Sbjct: 142 QHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFG 201

Query: 232 -EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
            +   R++V +  +I G+ +   +++ L+++  ++R G   ++ T +S+++AC   A LE
Sbjct: 202 IDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALE 261

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            GTQ+H  V+K  +D D  +++ L+DMY KCG LE A+  F  +     I+W++++S   
Sbjct: 262 QGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFG 321

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           Q+G  ++A+K+FE M    +KPN IT + +L  CSHAG VE+G ++F SM K YG+ PG 
Sbjct: 322 QHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGE 381

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           EHYSC+IDLLGRAG+L+EA + I+ MP+EP+A  W + LGAC++H + ++   AA+K++ 
Sbjct: 382 EHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVK 441

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           L+P++ G  +LLSNIYAN ++W++V  VR  MR   + K PG SW++V  + H F   D 
Sbjct: 442 LEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDW 501

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
           SHP+   I + L  L+ ++   GY P T+ V  D++   KE  +  HSE++A+ F L+S+
Sbjct: 502 SHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISM 561

Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             GK I ++KNLR+C DCH+  K  +K+  + I++RD  R+HHF DG+CSCGDYW
Sbjct: 562 PIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 616



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/326 (33%), Positives = 177/326 (54%), Gaps = 10/326 (3%)

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL--- 191
           MP+RN+VSWT MIS         +A+     M   G  P  F +S+ +RAC SL  +   
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           +Q+HC  +K G  S++FV S L D+Y+K G + +A  VF EMP +D V W ++I G+++ 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILN 309
            + +EAL  +K+M       DQ  L S L AC  L   + G  VH  V+K  ++ D+ + 
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQ-KDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
           NAL DMY K G +E A +VF    + ++V+S++ +I G  +    ++ L +F  ++   I
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 240

Query: 369 KPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           +PN  T   ++ AC++   +E G   H + MK  +  DP     S ++D+ G+ G L++A
Sbjct: 241 EPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLLEQA 298

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVH 453
           ++   E+  +P  + W +L+     H
Sbjct: 299 IQAFDEIG-DPTEIAWNSLVSVFGQH 323



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 183/369 (49%), Gaps = 18/369 (4%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++D +++     +   A+ A   M    V  D       +  C A  A +  + VH+ 
Sbjct: 111 TAMIDGYSKI---GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSS 167

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE-RNVVSWTTMISAYCDAKMNDK 158
           V+  GFE + F+ N L +M+ K   +E A  +F    E RNVVS+T +I  Y + +  +K
Sbjct: 168 VVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEK 227

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALID 215
            L + + + R+G+ PN FT+S++++AC +   L    QLH  ++K+ F+ D FV S L+D
Sbjct: 228 GLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVD 287

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           +Y K G L  A   F+E+     + WNS++  F Q+    +A+ +++RM   G   +  T
Sbjct: 288 MYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAIT 347

Query: 276 LTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSR 331
             S+L  C+   L+E G   + + +   + ++      + ++D+  + G L++A    +R
Sbjct: 348 FISLLTGCSHAGLVEEGLD-YFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINR 406

Query: 332 M-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
           M  + +   W + +     +G  +E  KL  + K+ +++P      G L   S+    E 
Sbjct: 407 MPFEPNAFGWCSFLGACRIHG-DKEMGKL-AAEKLVKLEPKN---SGALVLLSNIYANER 461

Query: 391 GWNHFKSMK 399
            W   +S++
Sbjct: 462 QWEDVRSVR 470



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 142/310 (45%), Gaps = 50/310 (16%)

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           MP R+LV W ++I G +QNS   EA+  +  M+  G    Q   +S +RAC  L  +E+G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 293 TQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
            Q+H   LK+    +L + + L DMY KCG++ DA  VF  M  KD +SW+ MI G ++ 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACS-----------HAGFVEDGW------- 392
           G  +EAL  F+ M    +  +   +   L AC            H+  V+ G+       
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 393 ----------NHFKSMKKFYGIDPGREH---YSCMIDLLGRAGKLQEAVKLIHEM---PY 436
                        +S    +GID    +   Y+C+ID      ++++ + +  E+     
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 240

Query: 437 EPDAVTWRALLGAC----KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS----- 487
           EP+  T+ +L+ AC     + + T L     K  +N D +DP    +L ++Y        
Sbjct: 241 EPNEFTFSSLIKACANQAALEQGTQLHAQVMK--INFD-EDPFVSSILVDMYGKCGLLEQ 297

Query: 488 --QKWDEVAE 495
             Q +DE+ +
Sbjct: 298 AIQAFDEIGD 307


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/601 (39%), Positives = 369/601 (61%), Gaps = 7/601 (1%)

Query: 50  CY-QRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY + D+P  A+     M+  G + +      ++K  +   +    K +H   +    + 
Sbjct: 225 CYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDT 284

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           E  +   LL+M+ K   +E+A+ +F+ +P  +V+ W+ +IS Y  +  N++A E+ + M+
Sbjct: 285 EPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMM 344

Query: 168 REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           R  V PN F+ S VL+AC ++  L   +Q+H  +IK+G+ES++FV +AL+D+YAK   + 
Sbjct: 345 RSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNME 404

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
           N+  +F  +   + V WN+II G+ Q+   ++AL++++ M+ A   + Q T +SVLRAC 
Sbjct: 405 NSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACA 464

Query: 285 GLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
             A ++   Q+H  + K  +++D I+ N+L+D Y KCG + DA+ VF  +IQ DV+SW+ 
Sbjct: 465 NTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNA 524

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           +ISG A +G + +AL+LF  M  S  KPN +T V +L  C   G V  G + F SM   +
Sbjct: 525 IISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDH 584

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            I P  +HY+C++ LLGRAG+L +A+K I ++P  P  + WRALL +C VH+N  L   +
Sbjct: 585 RIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFS 644

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A+K+L ++PQD  TY+LLSN+YA +   D+VA +RK+MR  G+ KE G SW+E+  ++HA
Sbjct: 645 AEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHA 704

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F+V  + HP +  IN  L+ L  K    GY PD N VL D++ E+K   +  HSE+LA+ 
Sbjct: 705 FSVGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALA 764

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           +GL     G  IRI KNLR C DCHT  K+ +K+  + IV+RD  R+HHF +G CSCGDY
Sbjct: 765 YGLSMTPPGHPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDY 824

Query: 643 W 643
           W
Sbjct: 825 W 825



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 212/389 (54%), Gaps = 10/389 (2%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGG--FEPETFLVNILLNMHVKFSLLEEA 128
           + DS   A L++ C+AR      + VH  V+  G   + +TF  N+LLN++ K   L  A
Sbjct: 44  KLDSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAA 103

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR---AC 185
           + LFD MPERN+VS+ T++  Y      ++A  L   + REG   N F  + +L+   A 
Sbjct: 104 RRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAM 163

Query: 186 DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
           D+  +   +H    K+G + + FV S+LID Y+  G + +A CVF+ +  +D V W +++
Sbjct: 164 DAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMV 223

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--D 303
             +++N   ++ALN + +M+ AG   +   LTSVL+A   L+   LG  +H   +K   D
Sbjct: 224 SCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCD 283

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            +  +  ALLDMY KCG +EDA +VF  +   DVI WS +IS  AQ+  +++A ++F  M
Sbjct: 284 TEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRM 343

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
             S + PN  ++ GVL AC++  F++ G      + K  G +      + ++D+  +   
Sbjct: 344 MRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKL-GYESELFVGNALMDVYAKCRN 402

Query: 424 LQEAVKLIHEMPYEPDAVTWRALL-GACK 451
           ++ ++++   +  + + V+W  ++ G C+
Sbjct: 403 MENSLEIFRSL-RDANEVSWNTIIVGYCQ 430



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 222/427 (51%), Gaps = 8/427 (1%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN  S +     +  +     A      +Q  G   +      ++K  +A  A      +
Sbjct: 113 RNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCI 172

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H      G +   F+ + L++ +     +  A+ +FD +  ++ V+WT M+S Y +  + 
Sbjct: 173 HACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIP 232

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSAL 213
           + AL     M   G +PN F  ++VL+A     S ++ + +H   +K   +++  V  AL
Sbjct: 233 EDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGAL 292

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           +D+YAK G + +A  VF  +P  D+++W+ +I  +AQ+   ++A  ++ RM R+    ++
Sbjct: 293 LDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNE 352

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
            +L+ VL+AC  +A L+LG Q+H  V+K  Y+ +L + NAL+D+Y KC ++E+++ +F  
Sbjct: 353 FSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRS 412

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           +   + +SW+T+I G  Q+G++++AL +F+ M+ + +    +T   VL AC++   ++  
Sbjct: 413 LRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHT 472

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
                S+ +    +      + +ID   + G +++A+K + E   + D V+W A++    
Sbjct: 473 V-QIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALK-VFESIIQCDVVSWNAIISGYA 530

Query: 452 VH-RNTD 457
           +H R TD
Sbjct: 531 LHGRATD 537



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 158/333 (47%), Gaps = 11/333 (3%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105
            +R+       +A +    M    V  +  + + +++ C     ++  + +HN V+  G+
Sbjct: 324 ISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGY 383

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           E E F+ N L++++ K   +E +  +F  + + N VSW T+I  YC +   + AL +   
Sbjct: 384 ESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQE 443

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           M    V     T+S+VLRAC +   ++   Q+H  I K  F +D  V ++LID YAK G 
Sbjct: 444 MRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGC 503

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           +R+A  VF  +   D+V WN+II G+A +    +AL L+ RM ++    +  T  ++L  
Sbjct: 504 IRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSV 563

Query: 283 CTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRMIQK-DV 337
           C    L+  G  +  + +  DH +  +      ++ +  + G L DA+     +      
Sbjct: 564 CGSTGLVNQGLSL-FNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSP 622

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           + W  ++S      +   AL  F + KV  I+P
Sbjct: 623 MVWRALLSSCVV--HKNVALGKFSAEKVLEIEP 653


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 250/603 (41%), Positives = 363/603 (60%), Gaps = 40/603 (6%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           +S+++  ++   +    +E+A+     +     + E    N ++  +VK + L +A+ +F
Sbjct: 91  NSISWNGMLAAYVQNGRIEDAR----RLFESKADWELISWNCMMGGYVKRNRLVDARGIF 146

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL---------- 182
           D+MPER+ VSW TMIS Y     N + LE         VR ++FT++A++          
Sbjct: 147 DRMPERDEVSWNTMISGYAQ---NGELLEAQRLFEESPVR-DVFTWTAMVSGYVQNGMLD 202

Query: 183 ---RACDSL----------IILRQLHCGIIKVGFE-------SDVFVRSALIDIYAKLGE 222
              R  D +          II   + C  +    E        +V   + +I  YA+ G+
Sbjct: 203 EARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGD 262

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           +  A   F+ MP RD + W +II G+AQ+   +EAL+L+  MKR G   ++ST TS L  
Sbjct: 263 IAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLST 322

Query: 283 CTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           C  +A LELG QVH  V+K   +    + NALL MYCKCG+++DA  VF  + +K+V+SW
Sbjct: 323 CAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSW 382

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           +TMI+G A++G+ +EAL LFESMK + I P+ +T+VGVL ACSH G V+ G  +F SM +
Sbjct: 383 NTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQ 442

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            YGI    +HY+CMIDLLGRAG+L +A  L+  MP+EPDA TW ALLGA ++H NT+L  
Sbjct: 443 DYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGE 502

Query: 461 CAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQI 520
            AAK I  ++P + G Y+LLSN+YA S +W +V  +R  MR RG+ K PG SW+EV  +I
Sbjct: 503 KAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKI 562

Query: 521 HAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLA 580
           H F V DS HP+ D+I   L+ L  K+   GY   T  VL D+E E+K   ++YHSEKLA
Sbjct: 563 HTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLA 622

Query: 581 IVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
           + FG++++  G+ IR+ KNLR+C DCH   K  +K+  + I++RD  R+HHF  G CSCG
Sbjct: 623 VAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCG 682

Query: 641 DYW 643
           DYW
Sbjct: 683 DYW 685



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 168/371 (45%), Gaps = 56/371 (15%)

Query: 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
           V++  L  A++LFDQMPER+VVSW  M+S Y       +A E+   M  +    N  +++
Sbjct: 41  VRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWN 96

Query: 180 AVLRACDSLIILRQLHCGIIKVG---FES----DVFVRSALIDIYAKLGELRNAECVFNE 232
            +L A         +  G I+     FES    ++   + ++  Y K   L +A  +F+ 
Sbjct: 97  GMLAA--------YVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDR 148

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           MP RD V WN++I G+AQN ++ EA  L++         D  T T+++       +L+  
Sbjct: 149 MPERDEVSWNTMISGYAQNGELLEAQRLFEESP----VRDVFTWTAMVSGYVQNGMLDEA 204

Query: 293 TQV------------------HVHVLKYDHDLILN-----------NALLDMYCKCGSLE 323
            +V                  +V   + D    L            N ++  Y + G + 
Sbjct: 205 RRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIA 264

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
            A + F RM Q+D ISW+ +I+G AQ+GY +EAL LF  MK    + N  T    L  C+
Sbjct: 265 QARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCA 324

Query: 384 HAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
               +E G   H + +K   G++ G    + ++ +  + G + +A  ++ E   E + V+
Sbjct: 325 EIAALELGKQVHGRVVKA--GLESGCYVGNALLVMYCKCGNIDDAY-IVFEGIEEKEVVS 381

Query: 443 WRALLGACKVH 453
           W  ++     H
Sbjct: 382 WNTMIAGYARH 392



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 144/316 (45%), Gaps = 23/316 (7%)

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           LR A  +F++MP RD+V WN+++ G+AQN  V EA  ++  M       +  +   +L A
Sbjct: 46  LRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP----CKNSISWNGMLAA 101

Query: 283 CTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
                 +E   ++     K D +LI  N ++  Y K   L DA  +F RM ++D +SW+T
Sbjct: 102 YVQNGRIEDARRLFES--KADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNT 159

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           MISG AQNG   EA +LFE   V  +     T   ++      G +++    F  M +  
Sbjct: 160 MISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEARRVFDGMPEKN 215

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            +      ++ +I    +  ++ +A +L   MP + +  +W  ++      +N D+A   
Sbjct: 216 SVS-----WNAIIAGYVQCKRMDQARELFEAMPCQ-NVSSWNTMITG--YAQNGDIA--Q 265

Query: 463 AKKILNLDPQ-DPGTYILLSNIYANSQKWDEVAEVRKTMRARG--ITKEPGCSWIEVNKQ 519
           A+   +  PQ D  ++  +   YA S   +E   +   M+  G  + +    S +    +
Sbjct: 266 ARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAE 325

Query: 520 IHAFNVADSSHPQIDK 535
           I A  +    H ++ K
Sbjct: 326 IAALELGKQVHGRVVK 341



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 21/195 (10%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  G R +  T+   +  C    A+E  K VH  V+  G E   ++ N LL M+ K   
Sbjct: 304 MKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGN 363

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +++A ++F+ + E+ VVSW TMI+ Y       +AL L   M + G+ P+  T   VL A
Sbjct: 364 IDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSA 423

Query: 185 CDSLIILRQLHCGIIKVGFE------SDVFVR------SALIDIYAKLGELRNAECVFNE 232
           C         H G++  G E       D  +       + +ID+  + G L +A+ +   
Sbjct: 424 CS--------HTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKN 475

Query: 233 MPTR-DLVVWNSIIG 246
           MP   D   W +++G
Sbjct: 476 MPFEPDAATWGALLG 490



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 89/181 (49%), Gaps = 15/181 (8%)

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
           +L  A  +F +M ++DV+SW+ M+SG AQNGY +EA ++F+ M       N I+  G+L 
Sbjct: 45  NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLA 100

Query: 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
           A    G +ED    F+S   +  I      ++CM+    +  +L +A  +   MP E D 
Sbjct: 101 AYVQNGRIEDARRLFESKADWELIS-----WNCMMGGYVKRNRLVDARGIFDRMP-ERDE 154

Query: 441 VTWRALLGACKVHRNTDLAICAAKKILNLDP-QDPGTYILLSNIYANSQKWDEVAEVRKT 499
           V+W  ++      +N +L    A+++    P +D  T+  + + Y  +   DE   V   
Sbjct: 155 VSWNTMISG--YAQNGEL--LEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDG 210

Query: 500 M 500
           M
Sbjct: 211 M 211


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/595 (37%), Positives = 364/595 (61%), Gaps = 6/595 (1%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
              A++    M+  G       ++  I+ C +  ++E  K +H   L  G   E F+ + 
Sbjct: 87  FSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSN 146

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           L +M+ K   + +A  +F++MP ++ VSWT MI  Y      ++AL     M+ E V  +
Sbjct: 147 LEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTID 206

Query: 175 MFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
                + L AC +L      R +H  ++K+GFESD+FV +AL D+Y+K G++ +A  VF 
Sbjct: 207 QHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFG 266

Query: 232 -EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
            +   R++V +  +I G+ +   +++ L+++  ++R G   ++ T +S+++AC   A LE
Sbjct: 267 IDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALE 326

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            GTQ+H  V+K  +D D  +++ L+DMY KCG LE A+  F  +     I+W++++S   
Sbjct: 327 QGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFG 386

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           Q+G  ++A+K+FE M    +KPN IT + +L  CSHAG VE+G ++F SM K YG+ PG 
Sbjct: 387 QHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGE 446

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           EHYSC+IDLLGRAG+L+EA + I+ MP+EP+A  W + LGAC++H + ++   AA+K++ 
Sbjct: 447 EHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVK 506

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           L+P++ G  +LLSNIYAN ++W++V  VR  MR   + K PG SW++V  + H F   D 
Sbjct: 507 LEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDW 566

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
           SHP+   I + L  L+ ++   GY P T+ V  D++   KE  +  HSE++A+ F L+S+
Sbjct: 567 SHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISM 626

Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             GK I ++KNLR+C DCH+  K  +K+  + I++RD  R+HHF DG+CSCGDYW
Sbjct: 627 PIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 208/388 (53%), Gaps = 10/388 (2%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D+   A +I+       +   K +H  ++  G+ P TFL N L+NM+ K   L+ A  LF
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL- 191
           D MP+RN+VSWT MIS         +A+     M   G  P  F +S+ +RAC SL  + 
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 192 --RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
             +Q+HC  +K G  S++FV S L D+Y+K G + +A  VF EMP +D V W ++I G++
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           +  + +EAL  +K+M       DQ  L S L AC  L   + G  VH  V+K  ++ D+ 
Sbjct: 184 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIF 243

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQ-KDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
           + NAL DMY K G +E A +VF    + ++V+S++ +I G  +    ++ L +F  ++  
Sbjct: 244 VGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQ 303

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
            I+PN  T   ++ AC++   +E G   H + MK  +  DP     S ++D+ G+ G L+
Sbjct: 304 GIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLLE 361

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVH 453
           +A++   E+  +P  + W +L+     H
Sbjct: 362 QAIQAFDEIG-DPTEIAWNSLVSVFGQH 388



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 168/351 (47%), Gaps = 50/351 (14%)

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           +QLH  +I  G+    F+ + L+++Y+K GEL +A  +F+ MP R+LV W ++I G +QN
Sbjct: 25  KQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQN 84

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILN 309
           S   EA+  +  M+  G    Q   +S +RAC  L  +E+G Q+H   LK+    +L + 
Sbjct: 85  SKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVG 144

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
           + L DMY KCG++ DA  VF  M  KD +SW+ MI G ++ G  +EAL  F+ M    + 
Sbjct: 145 SNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVT 204

Query: 370 PNYITIVGVLFACS-----------HAGFVEDGW-----------------NHFKSMKKF 401
            +   +   L AC            H+  V+ G+                    +S    
Sbjct: 205 IDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNV 264

Query: 402 YGIDPGREH---YSCMIDLLGRAGKLQEAVKLIHEM---PYEPDAVTWRALLGAC----K 451
           +GID    +   Y+C+ID      ++++ + +  E+     EP+  T+ +L+ AC     
Sbjct: 265 FGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAA 324

Query: 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS-------QKWDEVAE 495
           + + T L     K  +N D +DP    +L ++Y          Q +DE+ +
Sbjct: 325 LEQGTQLHAQVMK--INFD-EDPFVSSILVDMYGKCGLLEQAIQAFDEIGD 372



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 183/369 (49%), Gaps = 18/369 (4%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++D +++     +   A+ A   M    V  D       +  C A  A +  + VH+ 
Sbjct: 176 TAMIDGYSKI---GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSS 232

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE-RNVVSWTTMISAYCDAKMNDK 158
           V+  GFE + F+ N L +M+ K   +E A  +F    E RNVVS+T +I  Y + +  +K
Sbjct: 233 VVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEK 292

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALID 215
            L + + + R+G+ PN FT+S++++AC +   L    QLH  ++K+ F+ D FV S L+D
Sbjct: 293 GLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVD 352

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           +Y K G L  A   F+E+     + WNS++  F Q+    +A+ +++RM   G   +  T
Sbjct: 353 MYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAIT 412

Query: 276 LTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSR 331
             S+L  C+   L+E G   + + +   + ++      + ++D+  + G L++A    +R
Sbjct: 413 FISLLTGCSHAGLVEEGLD-YFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINR 471

Query: 332 M-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
           M  + +   W + +     +G  +E  KL  + K+ +++P      G L   S+    E 
Sbjct: 472 MPFEPNAFGWCSFLGACRIHG-DKEMGKL-AAEKLVKLEPKN---SGALVLLSNIYANER 526

Query: 391 GWNHFKSMK 399
            W   +S++
Sbjct: 527 QWEDVRSVR 535


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/602 (39%), Positives = 363/602 (60%), Gaps = 39/602 (6%)

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
           ++ C  R +   A  +H+ ++  GF+  + L N LL+++ K  L+ +A  LFD+MP R+ 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 141 VSWTTMISAYCDAKMNDKALELLIFML-REGVRPNMFTYSAVLRACDSLIILR---QLHC 196
           VSW ++++A+  A +  + L +L  M   +G++P+ F ++ ++RAC SL  LR   Q+H 
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM----------------------- 233
             +   F  D  V+S+LID+Y K G+  +A  VF+ +                       
Sbjct: 130 RFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCE 189

Query: 234 --------PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF-AADQSTLTSVLRACT 284
                   P R+L  W ++I G  Q+     + +L+  M+R G    D   L+SV+  C 
Sbjct: 190 AMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCA 249

Query: 285 GLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            LALLELG Q+H  V  L ++  L ++NAL+DMY KC  +  A  +F RM +KDVISW++
Sbjct: 250 NLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTS 309

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           +I G AQ+G ++EAL L++ M +SRIKPN +T VG+L+ACSHAG V  G   F+SM   Y
Sbjct: 310 IIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDY 369

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            I+P  +HY+C++DLL R+G L EA  L+ ++P++PD  TW +LL AC  H N ++ +  
Sbjct: 370 SINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRI 429

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A ++L+L P+DP TYILLSN+YA ++ W  V++VRK M +  + KEPG S I+  K    
Sbjct: 430 ADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQV 489

Query: 523 FNVADS-SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAI 581
           F+  +S  HP  ++I   LK L  ++   GY P+T++VL D+E ++KE  + +HSE+LA+
Sbjct: 490 FHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAV 549

Query: 582 VFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641
            +GL+    G  IRI KNLRICGDCH   K  + +  + I++RD  RYHHF++G CSC D
Sbjct: 550 AYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCND 609

Query: 642 YW 643
           +W
Sbjct: 610 FW 611



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 190/402 (47%), Gaps = 51/402 (12%)

Query: 57  RAMKAMHAMQCH-GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNIL 115
           R +  ++ M  H G++ D   +A +++ C +   +   K VH   +   F  +  + + L
Sbjct: 87  RTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSL 146

Query: 116 LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI----------- 164
           ++M+ K    ++A+ +FD +  +N VSWT+MIS Y  +    +A++L +           
Sbjct: 147 IDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWT 206

Query: 165 --------------------FMLREGVR-PNMFTYSAVLRACDSLIIL---RQLHCGIIK 200
                                M REG+   +    S+V+  C +L +L   +Q+H  +I 
Sbjct: 207 ALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIA 266

Query: 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNL 260
           +GFES +F+ +AL+D+YAK  ++  A+ +F  MP +D++ W SII G AQ+   +EAL L
Sbjct: 267 LGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTL 326

Query: 261 YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV---LKYDHDLILNNALLDMYC 317
           Y  M  +    ++ T   +L AC+   L+  G ++   +      +  L     LLD+  
Sbjct: 327 YDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLS 386

Query: 318 KCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP----NY 372
           + G L++A ++  ++  + D  +W++++S   ++   +  +++ +  +V  +KP     Y
Sbjct: 387 RSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIAD--RVLDLKPEDPSTY 444

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMK-----KFYGIDPGRE 409
           I +  V       G V        SM+      +  ID G++
Sbjct: 445 ILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKD 486


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/602 (39%), Positives = 362/602 (60%), Gaps = 39/602 (6%)

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
           ++ C  R +   A  +H+ ++  GF+  + L N LL+++ K  L+ +A  LFD+MP R+ 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 141 VSWTTMISAYCDAKMNDKALELLIFML-REGVRPNMFTYSAVLRACDSLIILR---QLHC 196
           VSW ++++A+  A +  + L +L  M   +G++P+ F ++ ++RAC SL  LR   Q+H 
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM----------------------- 233
             +   F  D  V+S+LID+Y K G+   A  VF+ +                       
Sbjct: 130 RFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCE 189

Query: 234 --------PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF-AADQSTLTSVLRACT 284
                   P R+L  W ++I G  Q+     + +L+  M+R G    D   L+SV+  C 
Sbjct: 190 AMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCA 249

Query: 285 GLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            LALLELG Q+H  V  L ++  L ++NAL+DMY KC  +  A  +F RM +KDVISW++
Sbjct: 250 NLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTS 309

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           +I G AQ+G ++EAL L++ M +SRIKPN +T VG+L+ACSHAG V  G   F+SM   Y
Sbjct: 310 IIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDY 369

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            I+P  +HY+C++DLL R+G L EA  L+ ++P++PD  TW +LL AC  H N ++ +  
Sbjct: 370 SINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRI 429

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A ++L+L P+DP TYILLSN+YA ++ W  V++VRK M +  + KEPG S I+  K    
Sbjct: 430 ADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQV 489

Query: 523 FNVADS-SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAI 581
           F+  +S  HP  ++I   LK L  ++   GY P+T++VL D+E ++KE  + +HSE+LA+
Sbjct: 490 FHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAV 549

Query: 582 VFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641
            +GL+    G  IRI KNLRICGDCH   K  + +  + I++RD  RYHHF++G CSC D
Sbjct: 550 AYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCND 609

Query: 642 YW 643
           +W
Sbjct: 610 FW 611



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 190/402 (47%), Gaps = 51/402 (12%)

Query: 57  RAMKAMHAMQCH-GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNIL 115
           R +  ++ M  H G++ D   +A +++ C +   +   K VH   +   F  +  + + L
Sbjct: 87  RTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSL 146

Query: 116 LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI----------- 164
           ++M+ K    +EA+ +FD +  +N VSWT+MIS Y  +    +A++L +           
Sbjct: 147 IDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWT 206

Query: 165 --------------------FMLREGVR-PNMFTYSAVLRACDSLIIL---RQLHCGIIK 200
                                M REG+   +    S+V+  C +L +L   +Q+H  +I 
Sbjct: 207 ALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIA 266

Query: 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNL 260
           +GFES +F+ +AL+D+YAK  ++  A+ +F  MP +D++ W SII G AQ+   +EAL L
Sbjct: 267 LGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTL 326

Query: 261 YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV---LKYDHDLILNNALLDMYC 317
           Y  M  +    ++ T   +L AC+   L+  G ++   +      +  L     LLD+  
Sbjct: 327 YDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLS 386

Query: 318 KCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP----NY 372
           + G L++A ++  ++  + D  +W++++S   ++   +  +++ +  +V  +KP     Y
Sbjct: 387 RSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIAD--RVLDLKPEDPSTY 444

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMK-----KFYGIDPGRE 409
           I +  V       G V        SM+      +  ID G++
Sbjct: 445 ILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKD 486


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/599 (38%), Positives = 362/599 (60%), Gaps = 7/599 (1%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           FC   +   A+  ++ M+  GV+ D++T A ++  C     V    L+H HVL  G + +
Sbjct: 197 FCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSD 256

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F+ N L+NM+ KF  L++AQ++FDQM  R++VSW ++I+AY        AL     M  
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQL 316

Query: 169 EGVRPNMFTY----SAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
            G+RP++ T     S   +  D  I    L   I +   + DV + +AL+++YAKLG + 
Sbjct: 317 GGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMN 376

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA-GFAADQSTLTSVLRAC 283
            A  VF+++P +D + WN+++ G+ QN    EA++ Y  M+       +Q T  S++ A 
Sbjct: 377 CAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAY 436

Query: 284 TGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
           + +  L+ G ++H  ++K     D+ +   L+D+Y KCG LEDAMS+F  + +   + W+
Sbjct: 437 SHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWN 496

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
            +I+ L  +G  +EAL+LF+ M   R+K ++IT V +L ACSH+G V++G   F  M+K 
Sbjct: 497 AIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKE 556

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
           YGI P  +HY CM+DLLGRAG L++A +L+  MP +PDA  W ALL ACK++ N +L   
Sbjct: 557 YGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTL 616

Query: 462 AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIH 521
           A+ ++L +D ++ G Y+LLSNIYAN++KW+ V +VR   R RG+ K PG S + V  +  
Sbjct: 617 ASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAE 676

Query: 522 AFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAI 581
            F   + +HP+  +I K LK L  K+  +GY PD ++V QD+E ++KE  +  HSE+LAI
Sbjct: 677 VFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAI 736

Query: 582 VFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
            FG++S      IRI KNLR+CGDCH   K  +++  + IV+RD  R+HHF+DG CSC 
Sbjct: 737 AFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICSCA 795



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/295 (34%), Positives = 175/295 (59%), Gaps = 6/295 (2%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
           V   K +H  +L  G      L   L+N++V    +  ++  FD + ++N+ SW ++ISA
Sbjct: 35  VNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISA 94

Query: 150 YCDAKMNDKALELL--IFMLREG--VRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFES 205
           Y       +A+  +  +F +  G  +RP+ +T+  +L+AC SL+  +++HC + K+GFE 
Sbjct: 95  YVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFED 154

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           DVFV ++L+ +Y++ G L  A  VF +MP +D+  WN++I GF QN +   AL +  RMK
Sbjct: 155 DVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMK 214

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLE 323
             G   D  T+ S+L  C     +  G  +H+HVLK+  D D+ ++NAL++MY K G L+
Sbjct: 215 GEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQ 274

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
           DA  VF +M  +D++SW+++I+   QN     AL+ F+ M++  I+P+ +T+V +
Sbjct: 275 DAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSL 329



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 147/290 (50%), Gaps = 13/290 (4%)

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           ++A+  +C ++   ++LH  ++  G   ++ + + LI++Y   G++  +   F+ +  ++
Sbjct: 25  FNALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKN 84

Query: 238 LVVWNSIIGGFAQNSDVDEALN----LYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           +  WNSII  + +     EA+N    L+          D  T   +L+AC  L     G 
Sbjct: 85  IFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLV---DGK 141

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           +VH  V K  ++ D+ +  +L+ +Y + G L+ A  VF  M  KDV SW+ MISG  QNG
Sbjct: 142 KVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNG 201

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREH 410
            +  AL +   MK   +K + IT+  +L  C+ +  V +G   H   +K  +G+D     
Sbjct: 202 NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK--HGLDSDVFV 259

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            + +I++  + G+LQ+A  +  +M    D V+W +++ A + + +   A+
Sbjct: 260 SNALINMYSKFGRLQDAQMVFDQMEVR-DLVSWNSIIAAYEQNNDPSTAL 308


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 229/574 (39%), Positives = 359/574 (62%), Gaps = 7/574 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y  L+  CL + A+ E + VH H++   + P T+L   LL  + K   LE+A+ + D+MP
Sbjct: 54  YDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMP 113

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQ 193
           E+NVVSWT MIS Y     + +AL +   M+R   +PN FT++ VL +C     L + +Q
Sbjct: 114 EKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQ 173

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H  I+K  ++S +FV S+L+D+YAK G++  A  +F  +P RD+V   +II G+AQ   
Sbjct: 174 IHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGL 233

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNA 311
            +EAL +++R++  G   +  T  S+L A +GLALL+ G Q H HVL+ +     +L N+
Sbjct: 234 DEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNS 293

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK-VSRIKP 370
           L+DMY KCG+L  A  +F  M ++  ISW+ M+ G +++G  +E L+LF  M+   R+KP
Sbjct: 294 LIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKP 353

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSM-KKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           + +T++ VL  CSH    + G + +  M    YGI P  EHY C++D+LGRAG++ EA +
Sbjct: 354 DAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFE 413

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489
            I  MP +P A    +LLGAC+VH + D+      +++ ++P++ G Y++LSN+YA++ +
Sbjct: 414 FIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGR 473

Query: 490 WDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549
           W++V  VR  M  + +TKEPG SWI+  + +H F+  D +HP+ +++   +K +  K+  
Sbjct: 474 WEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQ 533

Query: 550 VGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
            GY PD + VL D++ EQKE  +  HSEKLA+ FGL++  +G  IR+ KNLRIC DCH F
Sbjct: 534 AGYVPDISCVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNF 593

Query: 610 AKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           AK+ +K+  + + +RD  R+H    G CSCGDYW
Sbjct: 594 AKIFSKVFEREVSLRDKNRFHQIVKGICSCGDYW 627


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/592 (38%), Positives = 357/592 (60%), Gaps = 6/592 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++ +  MQ  G R DS+T   ++        +   K +H + +  GF     +   L 
Sbjct: 231 KALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALA 290

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   +E A+++FD M ++ VVSW +M+  Y      +KA+ +   ML EG+ P   
Sbjct: 291 DMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGV 350

Query: 177 TYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T    L AC  L  L +   +H  + ++   SD+ V ++LI +Y+K   +  A  +FN +
Sbjct: 351 TIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNL 410

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             R  V WN++I G+AQN  V EALN +  MK  G   D  T+ SV+ A   L++     
Sbjct: 411 NGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAK 470

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
            +H  +++   D ++ +  AL+DMY KCG++  A  +F  +  + VI+W+ MI G   +G
Sbjct: 471 WIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHG 530

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
             + AL LF+ MK   ++PN IT + V+ ACSH+G V++G  HFKSMK+ YG++P  +HY
Sbjct: 531 LGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHY 590

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
             M+DLLGRAG+++EA   I  MP  P    + A+LGACK+H+N ++   AAKK+  L+P
Sbjct: 591 GAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNP 650

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
            + G ++LL+NIYA++ KW +VAEVRKTM  +G+ K PGCS +E+  ++H+F    ++HP
Sbjct: 651 DEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHP 710

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
           Q  +I   L+ L+ ++   GY PDTN +L D+E + +E  +  HSEKLAI FGL++ + G
Sbjct: 711 QSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVEDDVQEQLLNSHSEKLAIAFGLLNTSPG 769

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            TI +RKNLR+CGDCH   K  + +  + I++RD  R+HHF++G CSCGDYW
Sbjct: 770 TTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 207/411 (50%), Gaps = 9/411 (2%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           +     L  A+  +  M+   V+     +  L+K C     ++  K +H  +++  F   
Sbjct: 122 YAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAAN 181

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F +  ++NM+ K   +++A  +FD+MPER++VSW T+I+ +       KALEL++ M  
Sbjct: 182 VFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQD 241

Query: 169 EGVRPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           EG RP+  T   VL A      L++ + +H   I+ GF   V + +AL D+Y+K G +  
Sbjct: 242 EGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVET 301

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F+ M  + +V WNS++ G+ QN + ++A+ ++++M   G      T+   L AC  
Sbjct: 302 ARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACAD 361

Query: 286 LALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L  LE G  VH  V  L    D+ + N+L+ MY KC  ++ A  +F+ +  +  +SW+ M
Sbjct: 362 LGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAM 421

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFY 402
           I G AQNG   EAL  F  MK   +KP+  T+V V+ A +         W H   ++   
Sbjct: 422 ILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC- 480

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            +D      + ++D+  + G +  A KL  +M  +   +TW A++     H
Sbjct: 481 -LDKNIFVTTALVDMYSKCGAIHMARKLF-DMISDRHVITWNAMIDGYGTH 529



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/388 (30%), Positives = 194/388 (50%), Gaps = 38/388 (9%)

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           V+  G   E      L+++  K+  + EA  +F+ + ++    + TM+  Y      + A
Sbjct: 72  VIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETA 131

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDI 216
           L  L  M  + V+P ++ ++ +L+ C     L+   ++H  +I   F ++VF  + ++++
Sbjct: 132 LAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNM 191

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           YAK  ++ +A  +F+ MP RDLV WN+II GF+QN    +AL L  RM+  G   D  TL
Sbjct: 192 YAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITL 251

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQ 334
            +VL A   + LL +G  +H + ++     ++N   AL DMY KCGS+E A  +F  M Q
Sbjct: 252 VTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQ 311

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG--- 391
           K V+SW++M+ G  QNG  ++A+ +FE M    I P  +TI+  L AC+  G +E G   
Sbjct: 312 KTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFV 371

Query: 392 ---------------WNHFKSM-KKFYGID---------PGREHYSCMIDLLGRA--GKL 424
                           N   SM  K   +D          GR H S    +LG A  G++
Sbjct: 372 HKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRV 431

Query: 425 QEAVKLIHEMP---YEPDAVTWRALLGA 449
            EA+    EM     +PD+ T  +++ A
Sbjct: 432 SEALNCFSEMKSLGMKPDSFTMVSVIPA 459


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 234/595 (39%), Positives = 365/595 (61%), Gaps = 5/595 (0%)

Query: 54   DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
            +L  + +    MQ  G+  +  TY  +++ C +  A+   + +H HV+  GF+   ++ +
Sbjct: 443  NLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCS 502

Query: 114  ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            +L++M+ K+  L  A  +  ++PE +VVSWT MI+ Y    M  +AL+L   M   G++ 
Sbjct: 503  VLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQF 562

Query: 174  NMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
            +   +++ + AC  +  LRQ   +H      GF +D+ + +ALI +YA+ G ++ A   F
Sbjct: 563  DNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAF 622

Query: 231  NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
             ++  ++ + WNS++ G AQ+   +EAL ++ RM R     +  T  S + A   LA ++
Sbjct: 623  EKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIK 682

Query: 291  LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
             G Q+H  VLK  YD +  ++N+L+ +Y K GS+ DA   F+ M +++VISW+ MI+G +
Sbjct: 683  QGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYS 742

Query: 349  QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
            Q+G   EAL+LFE MKV  I PN++T VGVL ACSH G V++G ++F+SM K + + P  
Sbjct: 743  QHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKS 802

Query: 409  EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
            EHY C++DLLGRAG+L  A++ I EMP   DA+ WR LL AC +H+N ++   AA  +L 
Sbjct: 803  EHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLE 862

Query: 469  LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
            L+P+D  TY+L+SNIYA S++W      RK M+  G+ KEPG SWIEV   +HAF   D 
Sbjct: 863  LEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDK 922

Query: 529  SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
             HP  ++I +++ HL ++   +GY  D+  +L + E  QK+     HSEKLAI FGL+SL
Sbjct: 923  LHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSL 982

Query: 589  TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
                 IR+ KNLR+C DCH + K  +K+ N++I++RD  R+HHF  G CSC D+W
Sbjct: 983  GNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/402 (31%), Positives = 212/402 (52%), Gaps = 7/402 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           RA++    MQ   ++ D +T A L+  C +  A+ +   +H+H +  G   +  L   LL
Sbjct: 345 RALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLL 404

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +++ K + +E A   F      N+V W  M+ AY        + E+   M  EG+ PN F
Sbjct: 405 DLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQF 464

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           TY ++LR C SL  L    Q+H  +IK GF+ +V+V S LID+YAK G+L  A  +   +
Sbjct: 465 TYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRL 524

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           P  D+V W ++I G+ Q+    EAL L++ M+  G   D     S + AC G+  L  G 
Sbjct: 525 PEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQ 584

Query: 294 QVHV--HVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+H   +   +  DL +NNAL+ +Y +CG +++A   F ++  K+ ISW++++SGLAQ+G
Sbjct: 585 QIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSG 644

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           Y +EAL++F  M  +  + N  T    + A +    ++ G     SM    G D  RE  
Sbjct: 645 YFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQG-QQIHSMVLKTGYDSEREVS 703

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           + +I L  ++G + +A +  ++M  E + ++W A++     H
Sbjct: 704 NSLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITGYSQH 744



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/419 (31%), Positives = 217/419 (51%), Gaps = 12/419 (2%)

Query: 38  NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVH 97
           NS S   D T    ++   + ++ M+ M+  GVR++   Y  L++ CL   ++ E   +H
Sbjct: 24  NSHSF--DQTTLHMEQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLH 81

Query: 98  NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND 157
             +   GF+ E  L++ L++ + +      A  +FD+   R+V SW  MI  +   K N 
Sbjct: 82  CRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNF 141

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRACDSLII----LRQLHCGIIKVGFESDVFVRSAL 213
           +   L   ML EG+ PN +T++ VL+AC    I    ++Q+H      GF+S   V + L
Sbjct: 142 QVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLL 201

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           ID+Y+K G + +A+ VFN +  +D+V W ++I G +QN   +EA+ L+  M  +      
Sbjct: 202 IDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTP 261

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
             L+SVL A T + L ELG Q+H  V+K  +  +  + N L+ +Y +   L  A  +FS 
Sbjct: 262 YVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFST 321

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           M  +D +S++++ISGL Q G+S  AL+LF  M+   +KP+ IT+  +L AC+  G +  G
Sbjct: 322 MNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKG 381

Query: 392 WN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
              H  ++K     D   E    ++DL  +   ++ A K       E + V W  +L A
Sbjct: 382 MQLHSHAIKAGMSADIILE--GSLLDLYSKCADVETAHKFFLXTETE-NIVLWNVMLVA 437



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 205/398 (51%), Gaps = 14/398 (3%)

Query: 65  MQCHGVRADSVTYAELIKCCLARH-AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123
           M   G+  +  T+A ++K C+    A    K VH+     GF+    + N+L++++ K  
Sbjct: 150 MLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNG 209

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
            +E A+ +F+ +  +++V+W  MIS      + ++A+ L   M    + P  +  S+VL 
Sbjct: 210 YIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLS 269

Query: 184 ACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           A   + +     QLHC +IK GF S+ +V + L+ +Y++  +L +AE +F+ M +RD V 
Sbjct: 270 ASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVS 329

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           +NS+I G  Q    D AL L+ +M+R     D  T+ S+L AC  +  L  G Q+H H +
Sbjct: 330 YNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAI 389

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K     D+IL  +LLD+Y KC  +E A   F     ++++ W+ M+    Q     ++ +
Sbjct: 390 KAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFE 449

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSC--MI 415
           +F  M++  + PN  T   +L  C+  G +  G   H   +K  + ++     Y C  +I
Sbjct: 450 IFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNV----YVCSVLI 505

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           D+  + G+L  A++++  +P E D V+W A++     H
Sbjct: 506 DMYAKYGQLALALRILRRLP-EDDVVSWTAMIAGYVQH 542


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 260/685 (37%), Positives = 379/685 (55%), Gaps = 98/685 (14%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+     M  + V  D+ TY  +++ C  R      K +H+HVL  GF+ + ++ N L+
Sbjct: 124 KALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLI 183

Query: 117 NMH-------------------------------VKFSLLEEAQVLFDQMPERNVV---- 141
           NM+                               VK   +EEA+++FDQMP+RN+V    
Sbjct: 184 NMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNS 243

Query: 142 ---------------------------SWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
                                      SW+ +IS Y    M ++AL + I M   G+R +
Sbjct: 244 MIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLD 303

Query: 175 MFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
                +VL AC  L I++    +H  +I++G ES V +++ALI +Y+  GE+ +A+ +FN
Sbjct: 304 EVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFN 363

Query: 232 E-------------------------------MPTRDLVVWNSIIGGFAQNSDVDEALNL 260
                                           MP +D+V W+++I G+AQ+    E L L
Sbjct: 364 GSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLAL 423

Query: 261 YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCK 318
           +  M+      D++ L SV+ ACT LA L+ G  VH ++ K     ++IL   LLDMY K
Sbjct: 424 FHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMK 483

Query: 319 CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
           CG +E+A+ VF+ M +K V SW+ +I GLA NG  + +L +F  MK + + PN IT +GV
Sbjct: 484 CGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGV 543

Query: 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP 438
           L AC H G V++G  HF SM + +GI+P  +HY CM+DLLGRAG L EA KLI  MP  P
Sbjct: 544 LGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAP 603

Query: 439 DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRK 498
           D  TW ALLGACK H +T++     +K++ L P   G ++LLSNI+A+   W++V EVR 
Sbjct: 604 DVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRG 663

Query: 499 TMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNY 558
            M+ +G+ K PGCS IE N  +H F   D +HP I+K+   L  + ++L   GYAPDTN 
Sbjct: 664 MMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNE 723

Query: 559 VLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMEN 618
           V  D++ E+KE ++  HSEKLAI FGL++++    IRI KNLRIC DCHT AKL +K   
Sbjct: 724 VSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYA 783

Query: 619 QTIVIRDPIRYHHFQDGNCSCGDYW 643
           + IV+RD  R+H+F++G CSC DYW
Sbjct: 784 REIVVRDRHRFHYFKEGACSCMDYW 808



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 193/374 (51%), Gaps = 56/374 (14%)

Query: 88  HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK--FSLLEEAQVLFDQMPERNVVSWTT 145
           H +++   + + ++  GF  +TF  + LL       F  L+ +  +FD++   N   W T
Sbjct: 52  HNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNT 111

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVG 202
           M+ AY  +   +KAL L   M++  V P+ +TY  V++AC   ++    +++H  ++KVG
Sbjct: 112 MMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVG 171

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
           F+SDV+V++ LI++YA  G +R+A  +F+E P  D V WNSI+ G+ +  DV+EA  ++ 
Sbjct: 172 FDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFD 231

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSL 322
           +M +                                      +++ +N+++ +  K G +
Sbjct: 232 QMPQ-------------------------------------RNIVASNSMIVLLGKMGQV 254

Query: 323 EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
            +A  +F+ M +KD++SWS +ISG  QNG  +EAL +F  M  + ++ + + +V VL AC
Sbjct: 255 MEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSAC 314

Query: 383 SHAGFVEDGWNHFKSMKKFYG--IDPGREHY----SCMIDLLGRAGKLQEAVKLIHEMPY 436
           +H   V+ G       K  +G  I  G E Y    + +I +   +G++ +A KL +   +
Sbjct: 315 AHLSIVKTG-------KMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNG-SH 366

Query: 437 EPDAVTWRALLGAC 450
             D ++W +++  C
Sbjct: 367 NLDQISWNSMISGC 380


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/559 (42%), Positives = 347/559 (62%), Gaps = 9/559 (1%)

Query: 92   EAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
            + + VH      G      + N L+  +  +  L++A  LFD M  R+ VSW+ M+  + 
Sbjct: 753  QVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGF- 811

Query: 152  DAKMNDKALELLIF--MLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESD 206
             AK+ D       F  ++R G RP+ +T   V+RAC  L  L   R +H  + K G + D
Sbjct: 812  -AKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLD 870

Query: 207  VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
             FV +AL+D+Y K  E+ +A  +F++M  RDLV W  +IGG+A+  + +E+L L+ +M+ 
Sbjct: 871  HFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMRE 930

Query: 267  AGFAADQSTLTSVLRACTGLALLELGTQV--HVHVLKYDHDLILNNALLDMYCKCGSLED 324
             G   D+  + +V+ AC  L  +     +  ++   K+  D+IL  A++DM+ KCG +E 
Sbjct: 931  EGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVES 990

Query: 325  AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
            A  +F RM +K+VISWS MI+    +G  ++AL LF  M  S I PN IT+V +L+ACSH
Sbjct: 991  AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSH 1050

Query: 385  AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
            AG VE+G   F  M + Y +    +HY+C++DLLGRAG+L EA+KLI  M  E D   W 
Sbjct: 1051 AGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWG 1110

Query: 445  ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
            A LGAC+ H++  LA  AA  +L L PQ+PG YILLSNIYAN+ +W++VA++R  M  R 
Sbjct: 1111 AFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRR 1170

Query: 505  ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLE 564
            + K PG +WIEV+ + H F+V D++HP+  +I + LK L  KL  VGY PDTN+VL D++
Sbjct: 1171 LKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVD 1230

Query: 565  GEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIR 624
             E K   +  HSEKLAI FGL++  +   IRI KNLR+CGDCHTF KL + +  + I++R
Sbjct: 1231 EELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVR 1290

Query: 625  DPIRYHHFQDGNCSCGDYW 643
            D  R+HHF++G CSCGDYW
Sbjct: 1291 DANRFHHFKEGACSCGDYW 1309



 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/517 (41%), Positives = 313/517 (60%), Gaps = 9/517 (1%)

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
           + + VH      G      + N L+  +  +  L++A  LFD M  R+ VSW+ M+  + 
Sbjct: 77  QVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGF- 135

Query: 152 DAKMNDKALELLIF--MLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESD 206
            AK+ D       F  ++R G RP+ +T   V+RAC  L  L   R +H  + K G + D
Sbjct: 136 -AKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLD 194

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
            FV +AL+D+Y K  E+ +A  +F++M  RDLV W  +IGG+A+    +E+L L+++M+ 
Sbjct: 195 HFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMRE 254

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQV--HVHVLKYDHDLILNNALLDMYCKCGSLED 324
            G   D+  + +V+ AC  L  +     +  ++   K+  D+IL  A++DMY KCG +E 
Sbjct: 255 EGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVES 314

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           A  +F RM +K+VISWS MI+    +G  ++AL LF  M  S + P+ IT+  +L+ACSH
Sbjct: 315 AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSH 374

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           AG VE+G   F SM + Y +    +HY+C++DLLGRAG+L EA+KLI  M  E D   W 
Sbjct: 375 AGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWG 434

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
           A LGAC+ H++  LA  AA  +L L  Q+PG Y+LLSNIYAN+ +W++VA++R  M  R 
Sbjct: 435 AFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRR 494

Query: 505 ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLE 564
           + K PG +WIEV+ + H F+V D++HP+  +I + LK L  KL  VGY PDTN+VL D++
Sbjct: 495 LKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVD 554

Query: 565 GEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
            E K   +  HSEKLAI FGL++  +   IRI KNLR
Sbjct: 555 EELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLR 591



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 164/328 (50%), Gaps = 23/328 (7%)

Query: 172 RPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
           R N   Y + L  C +L  +RQ+H      G   ++ V + LI  Y+    L +A  +F+
Sbjct: 59  RLNPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFD 118

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
            M  RD V W+ ++GGFA+  D       ++ + R G   D  TL  V+RAC  L  L++
Sbjct: 119 GMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQM 178

Query: 292 GTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G  +H  V K+  DL   +  AL+DMY KC  +EDA  +F +M ++D+++W+ MI G A+
Sbjct: 179 GRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAE 238

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG--WNHFKSMKKF-YGIDP 406
            G + E+L LFE M+   + P+ + +V V+FAC+  G +      + +   KKF   +  
Sbjct: 239 CGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVIL 298

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
           G    + MID+  + G ++ A ++   M  E + ++W A++ A   H          +K 
Sbjct: 299 G----TAMIDMYAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ-------GRKA 346

Query: 467 LNLDPQD------PGTYILLSNIYANSQ 488
           L+L P        P    L S +YA S 
Sbjct: 347 LDLFPMMLSSGMLPDKITLASLLYACSH 374



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 159/313 (50%), Gaps = 23/313 (7%)

Query: 187  SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            +L  +RQ+H      G   ++ V + L+  Y+    L +A  +F+ M  RD V W+ ++G
Sbjct: 750  NLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVG 809

Query: 247  GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL 306
            GFA+  D       ++ + R G   D  TL  V+RAC  L  L++G  +H  V K+  DL
Sbjct: 810  GFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDL 869

Query: 307  --ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
               +  AL+DMY KC  +EDA  +F +M ++D+++W+ MI G A+ G + E+L LF+ M+
Sbjct: 870  DHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMR 929

Query: 365  VSRIKPNYITIVGVLFACSHAGFVEDG--WNHFKSMKKF-YGIDPGREHYSCMIDLLGRA 421
               + P+ + +V V+FAC+  G +      + +   KKF   +  G    + MID+  + 
Sbjct: 930  EEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILG----TAMIDMHAKC 985

Query: 422  GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD------PG 475
            G ++ A ++   M  E + ++W A++ A   H          +K L+L P        P 
Sbjct: 986  GCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ-------GRKALDLFPMMLRSGILPN 1037

Query: 476  TYILLSNIYANSQ 488
               L+S +YA S 
Sbjct: 1038 KITLVSLLYACSH 1050



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 178/370 (48%), Gaps = 46/370 (12%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G R D+ T   +I+ C     ++  +L+H+ V   G + + F+   L++M+VK   +E+A
Sbjct: 155 GARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDA 214

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + LFD+M ER++V+WT MI  Y +    +++L L   M  EGV P+      V+ AC  L
Sbjct: 215 RFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKL 274

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             +   R +   I +  F+ DV + +A+ID+YAK G + +A  +F+ M  ++++ W+++I
Sbjct: 275 GAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMI 334

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD 305
             +  +    +AL+L+  M  +G   D+ TL S+L AC+                     
Sbjct: 335 AAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACS--------------------- 373

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRM-----IQKDVISWSTMISGLAQNGYSQEALKLF 360
                         G +E+ +  FS M     ++ DV  ++ ++  L + G   EALKL 
Sbjct: 374 ------------HAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLI 421

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420
           +SM + + +  +   +G   AC     V        S+ +    +PG  HY  + ++   
Sbjct: 422 KSMTIEKDEGLWGAFLG---ACRTHKDVVLAEKAATSLLELQSQNPG--HYVLLSNIYAN 476

Query: 421 AGKLQEAVKL 430
           AG+ ++  K+
Sbjct: 477 AGRWEDVAKI 486



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 176/370 (47%), Gaps = 46/370 (12%)

Query: 69   GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
            G R D+ T   +I+ C     ++  +L+H+ V   G + + F+   L++M+ K   +E+A
Sbjct: 831  GARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDA 890

Query: 129  QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
            + LFD+M ER++V+WT MI  Y +    +++L L   M  EGV P+      V+ AC  L
Sbjct: 891  RFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKL 950

Query: 189  IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
              +   R +   I +  F+ DV + +A+ID++AK G + +A  +F+ M  ++++ W+++I
Sbjct: 951  GAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMI 1010

Query: 246  GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD 305
              +  +    +AL+L+  M R+G   ++ TL S+L AC+                     
Sbjct: 1011 AAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACS--------------------- 1049

Query: 306  LILNNALLDMYCKCGSLEDAMSVFSRM-----IQKDVISWSTMISGLAQNGYSQEALKLF 360
                          G +E+ +  FS M     ++ DV  ++ ++  L + G   EALKL 
Sbjct: 1050 ------------HAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLI 1097

Query: 361  ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420
             SM   + +  +   +G   AC     V        S+ +    +PG  HY  + ++   
Sbjct: 1098 XSMTXEKDEGLWGAFLG---ACRTHKDVXLAEKAATSLLELQPQNPG--HYILLSNIYAN 1152

Query: 421  AGKLQEAVKL 430
            AG+ ++  K+
Sbjct: 1153 AGRWEDVAKI 1162



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 21/203 (10%)

Query: 65   MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
            M+  GV  D V    ++  C    A+ +A+ + +++    F+ +  L   +++MH K   
Sbjct: 928  MREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGC 987

Query: 125  LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            +E A+ +FD+M E+NV+SW+ MI+AY       KAL+L   MLR G+ PN  T  ++L A
Sbjct: 988  VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYA 1047

Query: 185  CDSLIILRQLHCGIIKVGF------------ESDVFVRSALIDIYAKLGELRNAECVFNE 232
            C         H G+++ G               DV   + ++D+  + G L  A  +   
Sbjct: 1048 CS--------HAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXS 1099

Query: 233  MPT-RDLVVWNSIIGGFAQNSDV 254
            M   +D  +W + +G    + DV
Sbjct: 1100 MTXEKDEGLWGAFLGACRTHKDV 1122



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 126/282 (44%), Gaps = 51/282 (18%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  GV  D V    ++  C    A+ +A+++ +++    F+ +  L   +++M+ K   
Sbjct: 252 MREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGC 311

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +E A+ +FD+M E+NV+SW+ MI+AY       KAL+L   ML  G+ P+  T +++L A
Sbjct: 312 VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYA 371

Query: 185 CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           C         H G+++ G        S++ + Y+   ++++  CV + +           
Sbjct: 372 CS--------HAGLVEEGLR----FFSSMWEDYSVRTDVKHYTCVVDLL----------- 408

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC-----------TGLALLELGT 293
                +   +DEAL L K M       D+    + L AC              +LLEL +
Sbjct: 409 ----GRAGRLDEALKLIKSMT---IEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQS 461

Query: 294 QVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK 335
           Q         H ++L+N    +Y   G  ED   +   M Q+
Sbjct: 462 Q------NPGHYVLLSN----IYANAGRWEDVAKIRDLMSQR 493


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/591 (40%), Positives = 361/591 (61%), Gaps = 6/591 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+   ++M+ + VR    ++A +IK C     +   + +H  V+  GF  +  +   L+ 
Sbjct: 283 ALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMV 342

Query: 118 MHVKFSLLEEAQVLFDQMPE-RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
            + K   + +A  LF +     NVVSWT MIS +      ++A+ L   M R+GVRPN F
Sbjct: 343 AYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEF 402

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           TYS +L A   +I   ++H  ++K  +E    V +AL+D Y KLG++  A  VF+ +  +
Sbjct: 403 TYSVILTAL-PVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNK 461

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL-ALLELGTQV 295
           D+V W++++ G+AQ  + + A+ ++  + + G   ++ T +S+L  C    A +  G Q 
Sbjct: 462 DIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQF 521

Query: 296 HVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H   +K   D  L +++ALL MY K G +E A  VF R  +KD++SW++MISG AQ+G +
Sbjct: 522 HGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQA 581

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
            +AL +F+ MK  ++K + +T +GV  AC+HAG VE+G  +F  M +   I P +EH SC
Sbjct: 582 MKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSC 641

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           M+DL  RAG+L++A+K+I  MP    +  WR +L AC+VH+ T+L   AA+KI+ + P+D
Sbjct: 642 MVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPED 701

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQI 533
              Y+LLSN+YA S  W E A+VRK M  R + KEPG SWIEV  + +AF   D SHP  
Sbjct: 702 SAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLK 761

Query: 534 DKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT 593
           D+I   L+ L  +L  +GY PDT+YVLQD++ E KE  +  HSE+LAI FGL++  +G  
Sbjct: 762 DQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSP 821

Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF-QDGNCSCGDYW 643
           + I KNLR+CGDCH   KL AK+E + IV+RD  R+HHF  DG CSCGD+W
Sbjct: 822 LLIIKNLRVCGDCHVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 209/420 (49%), Gaps = 14/420 (3%)

Query: 49  FCYQRD--LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           F + RD     A +    +Q  G+  D   ++ ++K           + +H   +  GF 
Sbjct: 70  FGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFL 129

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
            +  +   L++ ++K S  ++ + +FD+M ERNVV+WTT+IS Y    +N++ L L + M
Sbjct: 130 DDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRM 189

Query: 167 LREGVRPNMFTYSAVLRA-CDSLIILR--QLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
             EG +PN FT++A L    +  +  R  Q+H  ++K G +  + V ++LI++Y K G +
Sbjct: 190 QDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNV 249

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           R A  +F++   + +V WNS+I G+A N    EAL ++  M+       +S+  S+++ C
Sbjct: 250 RKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLC 309

Query: 284 TGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISW 340
             L  L    Q+H  V+KY    D  +  AL+  Y KC ++ DA+ +F       +V+SW
Sbjct: 310 ANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSW 369

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           + MISG  QN   +EA+ LF  MK   ++PN  T   +L A      +     H + +K 
Sbjct: 370 TAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALP---VISPSEVHAQVVKT 426

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            Y  +      + ++D   + GK+ EA K+   +    D V W A+L        T+ AI
Sbjct: 427 NY--ERSSTVGTALLDAYVKLGKVDEAAKVFSGID-NKDIVAWSAMLAGYAQAGETEAAI 483



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 176/336 (52%), Gaps = 14/336 (4%)

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
           S L  A  LFD+ P+R+  S+T+++  +       +A  L + +   G+  +   +S+VL
Sbjct: 45  SRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVL 104

Query: 183 RA----CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
           +     CD L   RQLHC  IK GF  DV V ++L+D Y K    ++   VF+EM  R++
Sbjct: 105 KVSATLCDELF-GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNV 163

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           V W ++I G+A+NS  +E L L+ RM+  G   +  T  + L       +   G QVH  
Sbjct: 164 VTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTV 223

Query: 299 VLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           V+K   D  + ++N+L+++Y KCG++  A  +F +   K V++W++MISG A NG   EA
Sbjct: 224 VVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEA 283

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAG---FVEDGWNHFKSMKKFYGIDPGREHYSC 413
           L +F SM+++ ++ +  +   ++  C++     F E    H   +K  YG    +   + 
Sbjct: 284 LGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQ--LHCSVVK--YGFVFDQNIRTA 339

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           ++    +   + +A++L  E  +  + V+W A++  
Sbjct: 340 LMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISG 375



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 116/235 (49%), Gaps = 6/235 (2%)

Query: 218 AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT 277
           A    L  A  +F++ P RD   + S++ GF+++    EA  L+  ++  G   D S  +
Sbjct: 42  ASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFS 101

Query: 278 SVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQK 335
           SVL+    L     G Q+H   +K+    D+ +  +L+D Y K  + +D  +VF  M ++
Sbjct: 102 SVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKER 161

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-H 394
           +V++W+T+ISG A+N  ++E L LF  M+    +PN  T    L   +  G    G   H
Sbjct: 162 NVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVH 221

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
              +K   G+D      + +I+L  + G +++A +++ +       VTW +++  
Sbjct: 222 TVVVKN--GLDKTIPVSNSLINLYLKCGNVRKA-RILFDKTEVKSVVTWNSMISG 273


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 234/611 (38%), Positives = 367/611 (60%), Gaps = 10/611 (1%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           S+++   +R    ++   A++ +  M    VR   V    ++        +   K +H +
Sbjct: 164 STMIRSLSR---NKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAY 220

Query: 100 VLSGGFEPETFL--VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND 157
           V+         +     LL+M+ K   L  A+ LF+ + ++ VVSWT MI+    +   +
Sbjct: 221 VIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLE 280

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALI 214
           +  +L I M  E + PN  T  +++  C    +L + +QLH  I++ GF   + + +AL+
Sbjct: 281 EGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALV 340

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           D+Y K  ++RNA  +F+    RD+++W +++  +AQ + +D+A NL+ +M+ +G    + 
Sbjct: 341 DMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKV 400

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           T+ S+L  C     L+LG  VH ++ K   + D ILN AL+DMY KCG +  A  +F   
Sbjct: 401 TIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEA 460

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
           I +D+  W+ +I+G A +GY +EAL +F  M+   +KPN IT +G+L ACSHAG V +G 
Sbjct: 461 ISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGK 520

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
             F+ M   +G+ P  EHY CM+DLLGRAG L EA ++I  MP +P+ + W AL+ AC++
Sbjct: 521 KLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRL 580

Query: 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCS 512
           H+N  L   AA ++L ++P++ G  +L+SNIYA + +W + A VRKTM+  G+ KEPG S
Sbjct: 581 HKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHS 640

Query: 513 WIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSI 572
            IEVN  +H F + D SHPQI +IN+ L  + +KL   GY PDT+ VL +++ E+KE ++
Sbjct: 641 VIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETAL 700

Query: 573 QYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF 632
            YHSEKLA+ FGL+S      IRI KNLR+C DCH   KL +K+  + I++RD  R+HHF
Sbjct: 701 TYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHF 760

Query: 633 QDGNCSCGDYW 643
           ++G CSCGDYW
Sbjct: 761 REGYCSCGDYW 771



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 201/393 (51%), Gaps = 33/393 (8%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139
           ++K C      +  K +H  VL  G + + F+ N L+ M+ + + +E A+++FD+M ER+
Sbjct: 100 VLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERD 159

Query: 140 VVSWTTMISAYCDAKMNDKALELLIFMLREGVRP---------NMFTYSAVLRACDSLII 190
           VVSW+TMI +    K  D ALEL+  M    VRP         N+F  +A +R      +
Sbjct: 160 VVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMR------M 213

Query: 191 LRQLHCGIIKVGFESDVFV--RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
            + +H  +I+      + V   +AL+D+YAK G L  A  +FN +  + +V W ++I G 
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 273

Query: 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDL 306
            +++ ++E   L+ RM+      ++ T+ S++  C     L+LG Q+H ++L+  +   L
Sbjct: 274 IRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSL 333

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
            L  AL+DMY KC  + +A ++F     +DV+ W+ M+S  AQ     +A  LF+ M+ S
Sbjct: 334 ALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTS 393

Query: 367 RIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSC-----MIDLLGR 420
            ++P  +TIV +L  C+ AG ++ G W H         ID  R    C     ++D+  +
Sbjct: 394 GVRPTKVTIVSLLSLCAVAGALDLGKWVHSY-------IDKERVEVDCILNTALVDMYAK 446

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            G +  A +L  E     D   W A++    +H
Sbjct: 447 CGDINAAGRLFIE-AISRDICMWNAIITGFAMH 478



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 147/282 (52%), Gaps = 11/282 (3%)

Query: 176 FTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           F   +VL+AC  +    + +++H  ++K G + DVFV +AL+ +Y +   +  A  VF++
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           M  RD+V W+++I   ++N + D AL L + M        +  + S++      A + +G
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 214

Query: 293 TQVHVHVLKYDHD----LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
             +H +V++  ++    +    ALLDMY KCG L  A  +F+ + QK V+SW+ MI+G  
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCI 274

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPG 407
           ++   +E  KLF  M+   I PN IT++ ++  C   G ++ G   H   ++  + +   
Sbjct: 275 RSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLA 334

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
               + ++D+ G+   ++ A + + +     D + W A+L A
Sbjct: 335 LA--TALVDMYGKCSDIRNA-RALFDSTQNRDVMIWTAMLSA 373



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 98/180 (54%), Gaps = 12/180 (6%)

Query: 278 SVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK 335
           SVL+AC  ++  +LG ++H  VLK   D D+ + NAL+ MY +C  +E A  VF +M+++
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
           DV+SWSTMI  L++N     AL+L   M   +++P+ + +V ++   +    +  G    
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG---- 214

Query: 396 KSMKKFYGIDPGREHY-----SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           K+M  +   +   EH      + ++D+  + G L  A +L + +  +   V+W A++  C
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLT-QKTVVSWTAMIAGC 273


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 237/605 (39%), Positives = 373/605 (61%), Gaps = 13/605 (2%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           FC   ++  A++ +  M+   V+ D+VT + ++  C   + V    LVH +V+  G E +
Sbjct: 223 FCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESD 282

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF--- 165
            F+ N L+NM+ KF  L++AQ +FD M  R++VSW ++I+AY   + ND  +  L F   
Sbjct: 283 VFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAY---EQNDDPVTALGFFKE 339

Query: 166 MLREGVRPNMFT---YSAVLRACDSLIILRQLHCGIIKVGF-ESDVFVRSALIDIYAKLG 221
           ML  G+RP++ T    +++        I R +H  +++  + E D+ + +AL+++YAKLG
Sbjct: 340 MLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLG 399

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA-GFAADQSTLTSVL 280
            +  A  VF ++P+RD++ WN++I G+AQN    EA++ Y  M+       +Q T  S+L
Sbjct: 400 SIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSIL 459

Query: 281 RACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
            A + +  L+ G ++H  ++K     D+ +   L+DMY KCG LEDAMS+F  + Q+  +
Sbjct: 460 PAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSV 519

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
            W+ +IS L  +G+ ++AL+LF+ M+   +K ++IT V +L ACSH+G V++    F +M
Sbjct: 520 PWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTM 579

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
           +K Y I P  +HY CM+DL GRAG L++A  L+  MP + DA  W  LL AC++H N +L
Sbjct: 580 QKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAEL 639

Query: 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNK 518
              A+ ++L +D ++ G Y+LLSNIYAN  KW+   +VR   R RG+ K PG S + V  
Sbjct: 640 GTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGS 699

Query: 519 QIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEK 578
            +  F   + SHPQ  +I + L+ L  K+  +GY PD ++VLQD+E ++KE+ +  HSE+
Sbjct: 700 VVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVEEDEKEEILTSHSER 759

Query: 579 LAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCS 638
           LAIVFG++S      IRI KNLR+CGDCH   K  +K+  + I++RD  R+HHF+DG CS
Sbjct: 760 LAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGICS 819

Query: 639 CGDYW 643
           CGDYW
Sbjct: 820 CGDYW 824



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 143/400 (35%), Positives = 233/400 (58%), Gaps = 14/400 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           GVR D  T+  ++K CL+   + + + +H  VL  GFE + ++   L++++ +F  +E A
Sbjct: 145 GVRPDFYTFPPVLKACLS---LADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVA 201

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC--- 185
             +F  MP R+V SW  MIS +C      +AL +L  M  E V+ +  T S++L  C   
Sbjct: 202 HKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQS 261

Query: 186 DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
           + ++    +H  +IK G ESDVFV +ALI++Y+K G L++A+ VF+ M  RDLV WNSII
Sbjct: 262 NDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSII 321

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---Y 302
             + QN D   AL  +K M   G   D  T+ S+      L+   +G  VH  V++    
Sbjct: 322 AAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWL 381

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           + D+++ NAL++MY K GS++ A +VF ++  +DVISW+T+I+G AQNG + EA+  +  
Sbjct: 382 EVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNM 441

Query: 363 MKVSR-IKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGR 420
           M+  R I PN  T V +L A SH G ++ G   H + +K    +D      +C+ID+ G+
Sbjct: 442 MEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVA--TCLIDMYGK 499

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            G+L++A+ L +E+P E  +V W A++ +  +H + + A+
Sbjct: 500 CGRLEDAMSLFYEIPQET-SVPWNAIISSLGIHGHGEKAL 538



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/292 (33%), Positives = 169/292 (57%), Gaps = 3/292 (1%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
           +  AK +H  +L  G   +  L+  L+ ++     L  +   F  +  +N+ SW +M+SA
Sbjct: 64  INVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSA 123

Query: 150 YCDAKMNDKALELLIFMLR-EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVF 208
           Y        +++ +  +L   GVRP+ +T+  VL+AC SL    ++HC ++K+GFE DV+
Sbjct: 124 YVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMHCWVLKMGFEHDVY 183

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           V ++LI +Y++ G +  A  VF +MP RD+  WN++I GF QN +V EAL +  RMK   
Sbjct: 184 VAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEE 243

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAM 326
              D  T++S+L  C     +  G  VH++V+K+  + D+ ++NAL++MY K G L+DA 
Sbjct: 244 VKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQ 303

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
            VF  M  +D++SW+++I+   QN     AL  F+ M    ++P+ +T+V +
Sbjct: 304 RVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSL 355



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 183/345 (53%), Gaps = 19/345 (5%)

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           ++ V R+C ++ + +QLH  ++ +G   DV + + L+ +YA LG+L  +   F  +  ++
Sbjct: 54  FNLVFRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKN 113

Query: 238 LVVWNSIIGGFAQNSDVDEALN-LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           +  WNS++  + +     ++++ + + +  +G   D  T   VL+AC  LA    G ++H
Sbjct: 114 IFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMH 170

Query: 297 VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
             VLK  ++HD+ +  +L+ +Y + G++E A  VF  M  +DV SW+ MISG  QNG   
Sbjct: 171 CWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVA 230

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSC 413
           EAL++ + MK   +K + +T+  +L  C+ +  V  G   H   +K  +G++      + 
Sbjct: 231 EALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIK--HGLESDVFVSNA 288

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ- 472
           +I++  + G+LQ+A ++   M    D V+W +++ A + + +   A+   K++L +  + 
Sbjct: 289 LINMYSKFGRLQDAQRVFDGMEVR-DLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRP 347

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVN 517
           D  T + L++I+       ++++ R      G      C W+EV+
Sbjct: 348 DLLTVVSLASIFG------QLSDRRIGRAVHGFVVR--CRWLEVD 384


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/632 (39%), Positives = 364/632 (57%), Gaps = 40/632 (6%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
            C Q+ +  A++ +H       R  +  Y+ LI  C+   A+E  + VH H  +  F P 
Sbjct: 65  LCQQKRVKEAVELLHRTDH---RPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPG 121

Query: 109 TFLVNILLNMHVK-------------------------------FSLLEEAQVLFDQMPE 137
            F+ N LL+M+ K                                  LE+A+ LFD+MP+
Sbjct: 122 VFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQ 181

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLR-EGVRPNMFTYSAVLRACDSLIILR---Q 193
           R+  SW   IS Y       +ALEL   M R E    N FT S+ L A  ++  LR   +
Sbjct: 182 RDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKE 241

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H  +I+     D  V SAL+D+Y K G L  A  +F++M  RD+V W ++I    ++  
Sbjct: 242 IHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGR 301

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNA 311
            +E   L++ + ++G   ++ T   VL AC   A   LG +VH +++   YD      +A
Sbjct: 302 REEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISA 361

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+ MY KCG+   A  VF+ M Q D++SW+++I G AQNG   EAL  FE +  S  KP+
Sbjct: 362 LVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPD 421

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            +T VGVL AC+HAG V+ G  +F S+K+ +G+    +HY+C+IDLL R+G+ +EA  +I
Sbjct: 422 QVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENII 481

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
             MP +PD   W +LLG C++H N +LA  AAK +  ++P++P TYI L+NIYAN+  W 
Sbjct: 482 DNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIYANAGLWS 541

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
           EVA VRK M   GI K+PG SWIE+ +Q+H F V D+SHP+   I++ L  L +K+   G
Sbjct: 542 EVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEG 601

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           Y PDTN+VL D+E EQKE ++ YHSEKLA+VFG++S   G  I++ KNLR C DCHT  K
Sbjct: 602 YVPDTNFVLHDVEEEQKEQNLVYHSEKLAVVFGIISTPPGTPIKVFKNLRTCVDCHTAIK 661

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             +K+  + I +RD  R+H F+DG+CSC DYW
Sbjct: 662 YISKIVQRKITVRDSNRFHCFEDGSCSCKDYW 693


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/581 (38%), Positives = 350/581 (60%), Gaps = 6/581 (1%)

Query: 69   GVRADSVTYAELIKCCLA-RHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
            G+  D  T A +++ C +       A  +H   +  G   ++F+   L++++ K   +EE
Sbjct: 1002 GLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEE 1061

Query: 128  AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
            A+ LF      ++ SW  M+  Y  +    KAL L I M   G R N  T +   +A   
Sbjct: 1062 AEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGG 1121

Query: 188  LIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
            L+ L+Q   +   ++K GF  D+FV S ++D+Y K GE+ +A  +FNE+P+ D V W ++
Sbjct: 1122 LVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTM 1181

Query: 245  IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD- 303
            I G  +N   + AL  Y  M+ +    D+ T  ++++AC+ L  LE G Q+H + +K + 
Sbjct: 1182 ISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNC 1241

Query: 304  -HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
              D  +  +L+DMY KCG++EDA  +F R     + SW+ MI GLAQ+G ++EAL+ FE 
Sbjct: 1242 AFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEE 1301

Query: 363  MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
            MK   + P+ +T +GVL ACSH+G V + + +F SM+K YGI+P  EHYSC++D L RAG
Sbjct: 1302 MKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAG 1361

Query: 423  KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
            +++EA K+I  MP+E  A  +R LL AC+V  + +     A+K+L L+P D   Y+LLSN
Sbjct: 1362 RIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSN 1421

Query: 483  IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKH 542
            +YA + +W+ VA  R  MR   + K+PG SW+++  ++H F   D SH + D I   +++
Sbjct: 1422 VYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEY 1481

Query: 543  LIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
            +++++   GY PDT++ L D+E E KE S+ YHSEKLAI +GLM      T+R+ KNLR+
Sbjct: 1482 IMKRIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRV 1541

Query: 603  CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            CGDCH   K  +K+  + +V+RD  R+HHF+ G CSCGDYW
Sbjct: 1542 CGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 125/398 (31%), Positives = 216/398 (54%), Gaps = 10/398 (2%)

Query: 70   VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
            V  D +T+  ++      + +E  K +H  V+  G +    + N L+NM+VK   +  A+
Sbjct: 902  VACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRAR 961

Query: 130  VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
             +F QM E ++VSW TMIS    + + + ++ + + +LR G+ P+ FT ++VLRAC SL 
Sbjct: 962  TVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLG 1021

Query: 190  ----ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
                +  Q+H   +K G   D FV + LID+Y+K G++  AE +F      DL  WN+++
Sbjct: 1022 GGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMM 1081

Query: 246  GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YD 303
             G+  + D  +AL LY  M+ +G  A+Q TL +  +A  GL  L+ G Q+   V+K  ++
Sbjct: 1082 HGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFN 1141

Query: 304  HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
             DL + + +LDMY KCG +E A  +F+ +   D ++W+TMISG  +NG  + AL  +  M
Sbjct: 1142 LDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHM 1201

Query: 364  KVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
            ++S+++P+  T   ++ ACS    +E G   H  ++K     DP     + ++D+  + G
Sbjct: 1202 RLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFV--MTSLVDMYAKCG 1259

Query: 423  KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
             +++A  L         A +W A++     H N + A+
Sbjct: 1260 NIEDARGLFKRTNTSRIA-SWNAMIVGLAQHGNAEEAL 1296



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 187/387 (48%), Gaps = 37/387 (9%)

Query: 70   VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
            V A   T A + K CL   +   A+ +H + +  G + + F+   L+N++ KF  + EA+
Sbjct: 723  VSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREAR 782

Query: 130  VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            VLFD M  R+VV W  M+ AY D  +  +AL L     R G+RP+  T   + R   S  
Sbjct: 783  VLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQ 842

Query: 190  ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
             + +     +K  + + +F+                      +    D++ WN  +  F 
Sbjct: 843  NVLEWQLKQLKA-YGTKLFMYDD-------------------DDDGSDVIAWNKTLSWFL 882

Query: 250  QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN 309
            Q  +  EA++ +  M  +  A D  T   +L    GL  LELG Q+H  V++   D +++
Sbjct: 883  QRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVS 942

Query: 310  --NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
              N L++MY K GS+  A +VF +M + D++SW+TMISG A +G  + ++ +F  +    
Sbjct: 943  VGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGG 1002

Query: 368  IKPNYITIVGVLFACSHAGFVEDGWNHFKS------MKKFYGIDPGREHYSCMIDLLGRA 421
            + P+  T+  VL ACS  G    G  H  +      MK    +D      + +ID+  ++
Sbjct: 1003 LLPDQFTVASVLRACSSLG----GGCHLATQIHACAMKAGVVLDSFVS--TTLIDVYSKS 1056

Query: 422  GKLQEAVKL-IHEMPYEPDAVTWRALL 447
            GK++EA  L +++  +  D  +W A++
Sbjct: 1057 GKMEEAEFLFVNQDGF--DLASWNAMM 1081



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 150/285 (52%), Gaps = 6/285 (2%)

Query: 54   DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
            D P+A++    MQ  G RA+ +T A   K       +++ K +   V+  GF  + F+++
Sbjct: 1089 DFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVIS 1148

Query: 114  ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
             +L+M++K   +E A+ +F+++P  + V+WTTMIS   +    + AL     M    V+P
Sbjct: 1149 GVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQP 1208

Query: 174  NMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
            + +T++ +++AC  L  L   RQ+H   +K+    D FV ++L+D+YAK G + +A  +F
Sbjct: 1209 DEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLF 1268

Query: 231  NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
                T  +  WN++I G AQ+ + +EAL  ++ MK  G   D+ T   VL AC+   L+ 
Sbjct: 1269 KRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVS 1328

Query: 291  LGTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
               +    + K    + ++   + L+D   + G + +A  V S M
Sbjct: 1329 EAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSM 1373



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 168/377 (44%), Gaps = 37/377 (9%)

Query: 87  RHAVEEAKL-----VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE--RN 139
           RHA+  + L      H  +L+ G  P+ FL N L+ M+ K   L  A+ LFD  P+  R+
Sbjct: 634 RHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRD 693

Query: 140 VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHC 196
           +V+W  ++SA+ D K  D    L   + R  V     T + V + C    S      LH 
Sbjct: 694 LVTWNAILSAHAD-KARD-GFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHG 751

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
             +K+G + DVFV  AL++IYAK G +R A  +F+ M  RD+V+WN ++  +       E
Sbjct: 752 YAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYE 811

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD-HDLILNNALLDM 315
           AL L+    R G   D  TL ++ R            +   +VL++    L      L M
Sbjct: 812 ALLLFSEFNRTGLRPDDVTLCTLARV----------VKSKQNVLEWQLKQLKAYGTKLFM 861

Query: 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITI 375
           Y                   DVI+W+  +S   Q G + EA+  F  M  SR+  + +T 
Sbjct: 862 YD------------DDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTF 909

Query: 376 VGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435
           V +L   +    +E G      +    G+D      +C+I++  + G +  A  +  +M 
Sbjct: 910 VVMLSVVAGLNCLELG-KQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMN 968

Query: 436 YEPDAVTWRALLGACKV 452
            E D V+W  ++  C +
Sbjct: 969 -EVDLVSWNTMISGCAL 984



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 6/207 (2%)

Query: 173 PNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           P  F+      A   L + ++ H  I+  G   D F+ + LI +Y+K G L +A  +F+ 
Sbjct: 627 PQWFSILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDT 686

Query: 233 MP--TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
            P  +RDLV WN+I+   A  +   +  +L++ ++R+  +A + TL  V + C   A   
Sbjct: 687 TPDTSRDLVTWNAILSAHADKAR--DGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPS 744

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
               +H + +K     D+ +  AL+++Y K G + +A  +F  M  +DV+ W+ M+    
Sbjct: 745 AAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYV 804

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITI 375
             G   EAL LF     + ++P+ +T+
Sbjct: 805 DTGLEYEALLLFSEFNRTGLRPDDVTL 831


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/551 (42%), Positives = 344/551 (62%), Gaps = 38/551 (6%)

Query: 131 LFDQMPER-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
           LF++  ++ NV SW ++I+    +  + +AL     M +  ++PN  T+   +++C +L+
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 190 IL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE-------------- 232
            L   RQ H   +  GFE D+FV SAL+D+Y+K GELR+A  +F+E              
Sbjct: 91  DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 150

Query: 233 -----------------MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG-FAADQS 274
                            M  RD++ WNSII  +AQN    E++ ++ RM + G    +  
Sbjct: 151 GYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAV 210

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           TL++VL AC       LG  +H  V+K   + ++ +  +++DMYCKCG +E A   F RM
Sbjct: 211 TLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRM 270

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
            +K+V SWS M++G   +G+++EAL++F  M ++ +KPNYIT V VL ACSHAG +E+GW
Sbjct: 271 REKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGW 330

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
           + FK+M   + ++PG EHY CM+DLLGRAG L+EA  LI  M   PD V W ALLGAC++
Sbjct: 331 HWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRM 390

Query: 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCS 512
           H+N DL   +A+K+  LDP++ G Y+LLSNIYA++ +W++V  +R  M+  G+ K PG S
Sbjct: 391 HKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFS 450

Query: 513 WIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSI 572
            +++  ++H F V D  HPQ +KI ++L+ L  KL  VGY PD   VL D+  E+KE  +
Sbjct: 451 LVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVL 510

Query: 573 QYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF 632
           + HSEKLA+ FG+M+   G TI I KNLR+CGDCHT  K  +K+ ++ IV+RD  R+HHF
Sbjct: 511 RVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHF 570

Query: 633 QDGNCSCGDYW 643
           +DG CSCGDYW
Sbjct: 571 RDGLCSCGDYW 581



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 194/413 (46%), Gaps = 70/413 (16%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D   A++A  +M+   ++ +  T+   IK C A   +   +  H   L  GFEP+ F+ +
Sbjct: 56  DSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSS 115

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC---DAK---------------- 154
            L++M+ K   L +A+ LFD++  RN+VSWT+MI+ Y    DA                 
Sbjct: 116 ALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVIS 175

Query: 155 ------------MNDKALELLIFMLREG-VRPNMFTYSAVLRAC---DSLIILRQLHCGI 198
                       M+ +++E+   M+++G +  N  T SAVL AC    S  + + +H  +
Sbjct: 176 WNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQV 235

Query: 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEAL 258
           IK+G ES+VFV +++ID+Y K G++  A   F+ M  +++  W++++ G+  +    EAL
Sbjct: 236 IKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEAL 295

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCK 318
            ++  M  AG   +  T  SVL AC+   LLE G       + ++ D             
Sbjct: 296 EVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWH-WFKAMSHEFD------------- 341

Query: 319 CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
                         ++  V  +  M+  L + GY +EA  L + MK   ++P+++    +
Sbjct: 342 --------------VEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMK---LRPDFVVWGAL 384

Query: 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGR-EHYSCMIDLLGRAGKLQEAVKL 430
           L AC     V+ G     S +K + +DP    +Y  + ++   AG+ ++  ++
Sbjct: 385 LGACRMHKNVDLG---EISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERM 434


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/592 (39%), Positives = 364/592 (61%), Gaps = 32/592 (5%)

Query: 75  VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV-----------------NILLN 117
           V  ++L + C+   + E   LV  + L GGF  +  +V                 N ++ 
Sbjct: 194 VQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIIT 253

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            + +   ++EA+ LFD+ P  +V +WT M+S Y   +M ++A EL   M       N  +
Sbjct: 254 GYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPER----NEVS 309

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFE----SDVFVRSALIDIYAKLGELRNAECVFNEM 233
           ++A+L        ++     + K  F+     +V   + +I  YA+ G++  A+ +F++M
Sbjct: 310 WNAMLAG-----YVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKM 364

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           P RD V W ++I G++Q+    EAL L+  M+R G   ++S+ +S L  C  +  LELG 
Sbjct: 365 PKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGK 424

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+H  ++K  Y+    + NALL MYCKCGS+E+A  +F  M  KD++SW+TMI+G +++G
Sbjct: 425 QLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHG 484

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           + +EAL+ FESMK   +KP+  T+V VL ACSH G V+ G  +F +M + YG+ P  +HY
Sbjct: 485 FGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHY 544

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +CM+DLLGRAG L+EA  L+  MP+EPDA  W  LLGA +VH NT+LA  AA KI  ++P
Sbjct: 545 ACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEP 604

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
           ++ G Y+LLSN+YA+S +W +V ++R  MR +G+ K PG SWIE+  + H F+V D  HP
Sbjct: 605 ENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHP 664

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
           + D+I   L+ L  ++   GY   T+ VL D+E E+KE  ++YHSE+LA+ +G+M ++ G
Sbjct: 665 EKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSG 724

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + IR+ KNLR+C DCH   K  AK+  + I++RD  R+HHF+DG+CSCGDYW
Sbjct: 725 RPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFKDGSCSCGDYW 776



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 187/426 (43%), Gaps = 63/426 (14%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV- 171
           N +++ +++    E A++LFD+MPER++VSW  MI  Y   +   KA EL   M    V 
Sbjct: 94  NAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVC 153

Query: 172 --------------------------RPNMFTYSAVLRACDSLIILRQLHCGIIKVGFES 205
                                       N  +++A+L A    +   +L    +  G   
Sbjct: 154 SWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSA---YVQNSKLEEACVLFGSRE 210

Query: 206 DVFVRS--ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLY-- 261
           +  + S   L+  + K  ++  A   F+ M  RD+V WN+II G+AQN ++DEA  L+  
Sbjct: 211 NWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDE 270

Query: 262 -------------------KRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY 302
                              + ++ A    D+    + +     LA    G +V +    +
Sbjct: 271 SPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELF 330

Query: 303 D----HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           D     ++   N ++  Y +CG + +A ++F +M ++D +SW+ MI+G +Q+G+S EAL+
Sbjct: 331 DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALR 390

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDL 417
           LF  M+    + N  +    L  C+    +E G   H + +K   G + G    + ++ +
Sbjct: 391 LFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKG--GYETGCFVGNALLLM 448

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI--CAAKKILNLDPQDPG 475
             + G ++EA  L  EM  + D V+W  ++     H   + A+    + K   L P D  
Sbjct: 449 YCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDAT 507

Query: 476 TYILLS 481
              +LS
Sbjct: 508 MVAVLS 513



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 161/343 (46%), Gaps = 33/343 (9%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N+ ++ +++     EA  +F +MP  + VS+  MIS Y    + +   EL   +  E   
Sbjct: 63  NVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGY----LRNGEFELARMLFDEMPE 118

Query: 173 PNMFTYSAVLRACDSLIILRQLHCGIIKVGF----ESDVFVRSALIDIYAKLGELRNAEC 228
            ++ +++ +++       +R  + G  +  F    E DV   + ++  YA+ G + +A  
Sbjct: 119 RDLVSWNVMIKG-----YVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARR 173

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           VF+ MP ++ V WN+++  + QNS ++EA  L+   +     +    L   ++    +  
Sbjct: 174 VFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEA 233

Query: 289 LELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            +    + V       D++  N ++  Y + G +++A  +F      DV +W+ M+SG  
Sbjct: 234 RQFFDSMKV------RDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYI 287

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           QN   +EA +LF+ M     + N ++   +L     AG+V+      +  K+ + + P R
Sbjct: 288 QNRMVEEARELFDRMP----ERNEVSWNAML-----AGYVQG--ERVEMAKELFDVMPCR 336

Query: 409 --EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
               ++ MI    + GK+ EA  L  +MP + D V+W A++  
Sbjct: 337 NVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 378



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 21/202 (10%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+  G R +  +++  +  C    A+E  K +H  ++ GG+E   F+ N LL 
Sbjct: 388 ALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLL 447

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +EEA  LF +M  +++VSW TMI+ Y      ++AL     M REG++P+  T
Sbjct: 448 MYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDAT 507

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFE------SDVFVR------SALIDIYAKLGELRN 225
             AVL AC         H G++  G +       D  VR      + ++D+  + G L  
Sbjct: 508 MVAVLSACS--------HTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEE 559

Query: 226 AECVFNEMPTR-DLVVWNSIIG 246
           A  +   MP   D  +W +++G
Sbjct: 560 AHNLMKNMPFEPDAAIWGTLLG 581


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/664 (35%), Positives = 379/664 (57%), Gaps = 51/664 (7%)

Query: 19  RQFSLTITPPVASCNTITRNSSSLLDDFTRFCY-QRDLP-RAMKAMHAMQCHGVRADSVT 76
           R F+    PP  +  ++ R            CY    LP +++ +   M   G+  D   
Sbjct: 61  RLFNTIHFPPALAWKSVIR------------CYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA-------- 128
           +  ++K C     +   + +H +++  G + + +  N L+NM+ K   LEE+        
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 129 ------------------------QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
                                   + +F+ MPE+++VSW T+I+      + ++ L ++ 
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 165 FMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
            M    ++P+ FT S+VL      + +   +++H   I+ G ++D++V S+LID+YAK  
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT 288

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
            + ++  VF  +  RD + WNSII G  QN   DE L  +++M  A       + +S++ 
Sbjct: 289 RVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMP 348

Query: 282 ACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
           AC  L  L LG Q+H ++ +  +D ++ + ++L+DMY KCG++  A  +F RM  +D++S
Sbjct: 349 ACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS 408

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           W+ MI G A +G + +A++LFE M+   IKPN++  + VL ACSH G V++ W +F SM 
Sbjct: 409 WTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMT 468

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
           + +GI PG EHY+ + DLLGRAG+L+EA   I  M   P    W  LL AC+VH N D+A
Sbjct: 469 RDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMA 528

Query: 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQ 519
              A +IL +DP + G YILL+NIY+ +++W E A+ R +MR  GI K P CSWIEV  +
Sbjct: 529 EKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNK 588

Query: 520 IHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKL 579
           ++AF   D SHP  +KI + ++ L++ +   GY PDT+ V  D+E EQK+  +  HSE+L
Sbjct: 589 VYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERL 648

Query: 580 AIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
           AIVFG+++   G TIR+ KNLR+C DCHT  K  +K+  + IV+RD  R+HHF++G CSC
Sbjct: 649 AIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSC 708

Query: 640 GDYW 643
           GDYW
Sbjct: 709 GDYW 712



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 185/380 (48%), Gaps = 39/380 (10%)

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++   +LL ++  LF+ +     ++W ++I  Y    +  ++L   I ML  G+ P+   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKL-------------G 221
           + +VL++C  L+ L     LH  II+VG + D++  +AL+++Y+KL             G
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 222 EL--------RNAECV-----------FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
           E+        R+   V           F  MP +DLV WN+II G A+N   +E L + +
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCG 320
            M  A    D  TL+SVL        +  G ++H   ++   D D+ + ++L+DMY KC 
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT 288

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
            + D+  VF+ + ++D ISW+++I+G  QNG   E L+ F  M +++IKP   +   ++ 
Sbjct: 289 RVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMP 348

Query: 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
           AC+H   +  G           G D      S ++D+  + G ++ A ++   M    D 
Sbjct: 349 ACAHLTTLHLG-KQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DM 406

Query: 441 VTWRALLGACKVHRNTDLAI 460
           V+W A++  C +H     AI
Sbjct: 407 VSWTAMIMGCALHGQAPDAI 426



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 113/272 (41%), Gaps = 39/272 (14%)

Query: 10  KWTKPSSQARQFSLTITPPVASCNTITRN--SSSLLDDFTRFCYQRDLPRAMKAMHAMQC 67
           K T+ +   R F+L       S N+I      + L D+  RF  Q            M  
Sbjct: 286 KCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQ------------MLM 333

Query: 68  HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
             ++  S +++ ++  C     +   K +H ++   GF+   F+ + L++M+ K   +  
Sbjct: 334 AKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRT 393

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A+ +FD+M  R++VSWT MI           A+EL   M  EG++PN   + AVL AC  
Sbjct: 394 AKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACS- 452

Query: 188 LIILRQLHCGII------------KVGFESDVFVRSALIDIYAKLGELRNAE---CVFNE 232
                  H G++              G    V   +A+ D+  + G L  A    C  + 
Sbjct: 453 -------HGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHI 505

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
            PT    +W +++     + ++D A  +  R+
Sbjct: 506 GPTGS--IWATLLSACRVHXNIDMAEKVANRI 535


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/579 (40%), Positives = 354/579 (61%), Gaps = 6/579 (1%)

Query: 70   VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
            V  D  T    +  C    ++   + +H   +   F  E    N LL+M+ K   L +A 
Sbjct: 650  VGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAI 709

Query: 130  VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---D 186
              F++M ++ VVSWT++I+AY    + D A+ L   M  +GV P++++ ++VL AC   +
Sbjct: 710  QAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGN 769

Query: 187  SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            SL   R +H  I K      + V +AL+D+YAK G +  A  VF+++P +D+V WN++IG
Sbjct: 770  SLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIG 829

Query: 247  GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDH 304
            G+++NS  +EAL L+  M++     D  T+  +L AC  LA LE+G  +H  +L+  Y  
Sbjct: 830  GYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSS 888

Query: 305  DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
            +L + NAL+DMY KCGSL  A  +F  + +KD+I+W+ MISG   +G   EA+  F+ M+
Sbjct: 889  ELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMR 948

Query: 365  VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
            ++ IKP+ IT   +L+ACSH+G + +GW  F SM     ++P  EHY+CM+DLL R G L
Sbjct: 949  IAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNL 1008

Query: 425  QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484
             +A  LI  MP +PDA  W ALL  C++H + +LA   A+ +  L+P + G Y+LL+NIY
Sbjct: 1009 SKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIY 1068

Query: 485  ANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLI 544
            A ++KW+EV ++R+ +  RG+ K PGCSWIEV  +   F  AD++HPQ   I   L +L 
Sbjct: 1069 AEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLR 1128

Query: 545  QKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICG 604
             K+   G++P   Y L +    +KE ++  HSEKLA+ FG+++L  G+TIR+ KNLR+C 
Sbjct: 1129 IKMKNEGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCD 1188

Query: 605  DCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            DCH  AK  +K   + I++RD  R+HHF+DG CSC D+W
Sbjct: 1189 DCHEMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 214/410 (52%), Gaps = 14/410 (3%)

Query: 48  RFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           +FC   DL  A++ +   Q      D   Y+ +++ C     ++E K+VH+ + S G   
Sbjct: 427 KFCEVGDLRNAVELLRMSQ--KSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPI 484

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERN-VVSWTTMISAYCDAKMNDKALELLIF- 165
           E  L   L+ M+V    L E + +FD +   N V  W  M+S Y  AK+ D    + +F 
Sbjct: 485 EGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEY--AKIGDYRESIYLFK 542

Query: 166 -MLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
            M + G+  N +T+S +L+   +L  +   +++H  + K+GF S   V ++LI  Y K G
Sbjct: 543 KMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSG 602

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
           E+ +A  +F+E+  RD+V WNS+I G   N     AL  + +M       D +TL + + 
Sbjct: 603 EVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVA 662

Query: 282 ACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
           AC  +  L LG  +H   +K  +  +++ NN LLDMY KCG+L DA+  F +M QK V+S
Sbjct: 663 ACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVS 722

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           W+++I+   + G   +A++LF  M+   + P+  ++  VL AC+    ++ G +    ++
Sbjct: 723 WTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIR 782

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           K   +       + ++D+  + G ++EA  +  ++P + D V+W  ++G 
Sbjct: 783 K-NNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVK-DIVSWNTMIGG 830



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 110/212 (51%), Gaps = 7/212 (3%)

Query: 52   QRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
            +  LP  A+K    MQ    R D +T A L+  C +  A+E  + +H  +L  G+  E  
Sbjct: 833  KNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELH 891

Query: 111  LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
            + N L++M+VK   L  A++LFD +PE+++++WT MIS      + ++A+     M   G
Sbjct: 892  VANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAG 951

Query: 171  VRPNMFTYSAVLRACDSLIILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
            ++P+  T++++L AC    +L +     +  I +   E  +   + ++D+ A+ G L  A
Sbjct: 952  IKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKA 1011

Query: 227  ECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
              +   MP + D  +W +++ G   + DV+ A
Sbjct: 1012 YNLIETMPIKPDATIWGALLCGCRIHHDVELA 1043


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/578 (40%), Positives = 344/578 (59%), Gaps = 4/578 (0%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G++ D+ T+  +IK C      E    +H  V+  G++ + F+ N L+ M+ K    E +
Sbjct: 5   GIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELS 64

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +FD+MP++N VSW+ +I A        +   L   ML EG RP+       +    S 
Sbjct: 65  RQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMACVRSH 124

Query: 189 IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
                ++  +++ G + D  V+SA   ++A+ G +  A  +F+ + ++DLV W + I  +
Sbjct: 125 EEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAY 184

Query: 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHD 305
            +     EAL L K+M   G   D  TL  V+RAC+ LA  +L   VH  +     Y+  
Sbjct: 185 VKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQL 244

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           L +  AL+D+Y KCGSL  A  VF  M ++++I+WS MISG   +G+ +EAL LF+ MK 
Sbjct: 245 LAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMKA 304

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
           S +KP++IT V +L ACSH+G V +GW  F SM + +G+ P  EHY+CM+D+LGRAGKL 
Sbjct: 305 S-VKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLD 363

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           EA   I  MP  P+A  W ALLGAC++H N DLA   A+ + +LDP + G Y++L NIY 
Sbjct: 364 EACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYNIYT 423

Query: 486 NSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQ 545
            + K  E   +R  M+ RG+ K  G S IE+  +++AF   D SHPQ D I   L+ L+ 
Sbjct: 424 LTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELERLMD 483

Query: 546 KLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGD 605
           ++   GY PD N+VL D++ E KE  +  HSEKLAIVFGL++L  G  IRIRKNLR+CGD
Sbjct: 484 RIRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNLRVCGD 543

Query: 606 CHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           CHT  K  +K+  + IV+RD  R+HHF++G CSC DYW
Sbjct: 544 CHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 152/300 (50%), Gaps = 23/300 (7%)

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           MLR G++P+ FT+  +++AC  L       ++H  ++K G++S VF+ ++LI +Y K  +
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
              +  VF+EMP ++ V W++IIG   Q+    E  +L+++M   G    + +  ++L A
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEG---SRPSRGAILNA 117

Query: 283 CTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
              +   E    V+  V++   D D  + +A   M+ +CG +E A  +F  ++ KD+++W
Sbjct: 118 MACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTW 177

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           +T I    +     EAL L + M +  I P+ IT++GV+ ACS           F+    
Sbjct: 178 ATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLA-------SFQLAHI 230

Query: 401 FYGIDPGREHY-------SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            +GI      Y       + +IDL  + G L  A K+   M  E + +TW A++    +H
Sbjct: 231 VHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQ-ERNIITWSAMISGYGMH 289



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 106/219 (48%), Gaps = 24/219 (10%)

Query: 54  DLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
           D+P  A+  +  M   G+  D++T   +I+ C    + + A +VH  + +G F  +   V
Sbjct: 188 DMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAV 247

Query: 113 NI-LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV 171
              L++++VK   L  A+ +FD M ERN+++W+ MIS Y       +AL L   M +  V
Sbjct: 248 ETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQM-KASV 306

Query: 172 RPNMFTYSAVLRACDSLIILRQLHCGIIKVGFE------SDVFVR------SALIDIYAK 219
           +P+  T+ ++L AC         H G++  G+E       D  V       + ++DI  +
Sbjct: 307 KPDHITFVSILSACS--------HSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGR 358

Query: 220 LGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
            G+L  A      MP R +  VW +++G    + +VD A
Sbjct: 359 AGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLA 397


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/540 (43%), Positives = 334/540 (61%), Gaps = 7/540 (1%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           EP++   NI+L  +++   +E A   F++MP +++ SW T+IS +       KA +L   
Sbjct: 133 EPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSV 192

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           M  +    N  ++SA++        L         VG +S V V +A++  Y K G++  
Sbjct: 193 MPEK----NGVSWSAMISGYVEHGDLEAAEELYKNVGMKS-VVVETAMLTGYMKFGKVEL 247

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           AE +F  M  ++LV WNS+I G+ +N   ++ L ++K M  +    +  +L+SVL  C+ 
Sbjct: 248 AERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSN 307

Query: 286 LALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L+ L LG Q+H  V K     D     +L+ MYCKCG L+ A  +F  M +KDVISW+ M
Sbjct: 308 LSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAM 367

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           ISG AQ+G  ++AL LF+ M+   +KP++IT V V+ AC+HAGFV+ G  +FKSMKK +G
Sbjct: 368 ISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFG 427

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           I+    HY+C+IDLLGRAG+L EAV LI EMP++P A  +  LLGAC++H+N DLA  AA
Sbjct: 428 IEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAA 487

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
           + +LNLDP     Y+ L+NIYA + KWD+VA+VRK M+   + K PG SWIE+    H F
Sbjct: 488 RNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEF 547

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
             +D  HP++  I+K L  L  K+   GY PD  + L D+E E KE  + +HSEKLAI F
Sbjct: 548 RSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAF 607

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GLM    G  IR+ KNLR+CGDCH   K  + +E + I++RD  R+HHF++G CSCGDYW
Sbjct: 608 GLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 109/256 (42%), Gaps = 36/256 (14%)

Query: 29  VASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARH 88
           +A  N +T NS  ++  +   C   D    +K    M    VR + ++ + ++  C    
Sbjct: 255 MAVKNLVTWNS--MIAGYVENCRAED---GLKVFKTMIESRVRPNPLSLSSVLLGCSNLS 309

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           A+   + +H  V       +T     L++M+ K   L+ A  LF +MP ++V+SW  MIS
Sbjct: 310 ALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMIS 369

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGII--------- 199
            Y       KAL L   M    ++P+  T+ AV+ AC+        H G +         
Sbjct: 370 GYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACN--------HAGFVDLGVQYFKS 421

Query: 200 ---KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD-LVVWNSIIGGFAQNSDVD 255
              + G E+     + +ID+  + G L  A  +  EMP +    ++ +++G         
Sbjct: 422 MKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLG--------- 472

Query: 256 EALNLYKRMKRAGFAA 271
            A  ++K +  A FAA
Sbjct: 473 -ACRIHKNLDLAEFAA 487



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 110/255 (43%), Gaps = 54/255 (21%)

Query: 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ-NSDVDEA 257
           + V   SDV   +  I  + +  +L +A  VF +M  R  V WN+++ G+ +    V EA
Sbjct: 65  LHVDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEA 124

Query: 258 LNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYC 317
             L+ ++                                      + D +  N +L  Y 
Sbjct: 125 HELFDKIP-------------------------------------EPDSVSYNIMLVCYL 147

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           +   +E A++ F++M  KD+ SW+T+ISG AQNG  Q+A  LF  M             G
Sbjct: 148 RSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKN---------G 198

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY---SCMIDLLGRAGKLQEAVKLIHEM 434
           V ++   +G+VE G    ++ ++ Y  + G +     + M+    + GK++ A ++   M
Sbjct: 199 VSWSAMISGYVEHG--DLEAAEELYK-NVGMKSVVVETAMLTGYMKFGKVELAERIFQRM 255

Query: 435 PYEPDAVTWRALLGA 449
             + + VTW +++  
Sbjct: 256 AVK-NLVTWNSMIAG 269



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 77/159 (48%), Gaps = 17/159 (10%)

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ-NGYSQEALKLFESM 363
           D++  N  +  + +   LE A +VF +M  +  ++W+TM+SG  +  G  +EA +LF+ +
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 364 KVSRIKPNYITIVGVLFACSHAGF-VEDGWNHFKSMKKFYGIDPGRE--HYSCMIDLLGR 420
                +P+ ++   ++  C    + VE     F  M       P ++   ++ +I    +
Sbjct: 132 P----EPDSVS-YNIMLVCYLRSYGVEAALAFFNKM-------PVKDIASWNTLISGFAQ 179

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
            G++Q+A  L   MP E + V+W A++     H + + A
Sbjct: 180 NGQMQKAFDLFSVMP-EKNGVSWSAMISGYVEHGDLEAA 217


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/589 (39%), Positives = 357/589 (60%), Gaps = 5/589 (0%)

Query: 60  KAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMH 119
           +A+  ++  G    +    +LI+ C    A+EE + +H  + SG  +   FL N+L++M+
Sbjct: 27  EAVDLLEQSGAAGGTGDLEQLIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMY 86

Query: 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
            K   L EA+ +FD M  +NV SWT +++ +  +    +A++L   M +EG  P+     
Sbjct: 87  GKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALL 146

Query: 180 AVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
             + +C +   L   R++H      G +SD+   +A+I++Y K G +  A  VF  MP +
Sbjct: 147 KFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEK 206

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           +++ W+++I  F QN   DEAL  +K M++ G   D+ T  SVL A T +  LELG  +H
Sbjct: 207 NVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALH 266

Query: 297 VHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
           V ++    D  +++ N L++MY KCGS +DA  VF  M++K+V+SW+ M++   QNG S+
Sbjct: 267 VRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSR 326

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414
           EAL LF+SM +  ++PN IT V +L+ CSH+G  +D  +HF  M++ +GI P   H+ C+
Sbjct: 327 EALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGITPREVHFGCL 386

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474
           ID+LGR+GKL+EA +LI  MP   DAV W +LL AC  H++ D A  AA++    +P+  
Sbjct: 387 IDMLGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVTHKDEDRAARAAEEAFQREPRCA 446

Query: 475 GTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQID 534
             YI+LSN+YA  +KWDE A+VRK M   G+ K+ G SWIE++KQ+H F   DS HP   
Sbjct: 447 AAYIMLSNLYAALKKWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQVHEFVAGDSIHPDKS 506

Query: 535 KINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTI 594
           +I K L+ L+ ++   GY PD   V+  +E E+K++ + YHSEKLA+ FG+ S      +
Sbjct: 507 RIFKTLQRLMSEMRIKGYEPDRKVVIHSMEEEEKDEVLFYHSEKLAVAFGIASTPPRTPL 566

Query: 595 RIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            I KNLR+C DCH+  K  + +E + I +RD  R+HHF  G CSCGDYW
Sbjct: 567 CIVKNLRVCSDCHSAIKFISGVEGRRITVRDSNRFHHFDRGECSCGDYW 615



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 150/297 (50%), Gaps = 13/297 (4%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++  H M   G   D V   + I  C A  A+ + + +H+   S G + +    N ++N
Sbjct: 126 AIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIIN 185

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   + EA  +F +MPE+NV+SW+TMI+A+C  ++ D+AL     M +EG+  +  T
Sbjct: 186 MYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRIT 245

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           Y +VL A  S+  L   + LH  I+  G ++ + V + L+++Y K G   +A  VF+ M 
Sbjct: 246 YVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMV 305

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            +++V WN+++  + QN    EAL L+  M   G   +  T  ++L  C+     +    
Sbjct: 306 EKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVS 365

Query: 295 VHVHVLKYDHDLILN------NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMI 344
              H ++   D  +         L+DM  + G LE+A  +   M +  D + W++++
Sbjct: 366 ---HFVEMRQDFGITPREVHFGCLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLL 419



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 106/216 (49%), Gaps = 7/216 (3%)

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
           R +  W S +        + EA++L   ++++G A     L  ++R C G   LE G ++
Sbjct: 7   RAITKWLSPVLECGGVDAIREAVDL---LEQSGAAGGTGDLEQLIRRCAGAKALEEGRRI 63

Query: 296 H--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H  +     D    L+N L+DMY KCGSL +A  VF  M  K+V SW+ +++G  Q+G  
Sbjct: 64  HRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRG 123

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
            EA++LF  M      P+ + ++  + +C  A  +  G     S     G+D      + 
Sbjct: 124 VEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQG-REIHSAAASCGMDSDLVTANA 182

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           +I++ G+ G + EA  +   MP E + ++W  ++ A
Sbjct: 183 IINMYGKCGSIGEAFAVFTRMP-EKNVISWSTMIAA 217



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 96/210 (45%), Gaps = 21/210 (10%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           FC       A+     MQ  G+  D +TY  ++    +  A+E  K +H  ++  G +  
Sbjct: 218 FCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTS 277

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             + N L+NM+ K    ++A+ +FD M E+NVVSW  M++AY     + +AL L   M  
Sbjct: 278 IVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDL 337

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVR------------SALIDI 216
           EGVRPN  T+  +L  C         H G  K      V +R              LID+
Sbjct: 338 EGVRPNDITFVTILYCCS--------HSGKFKDAVSHFVEMRQDFGITPREVHFGCLIDM 389

Query: 217 YAKLGELRNAECVFNEMPT-RDLVVWNSII 245
             + G+L  AE +   MP   D V+W S++
Sbjct: 390 LGRSGKLEEAEELIQAMPVPADAVLWTSLL 419


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 238/572 (41%), Positives = 349/572 (61%), Gaps = 6/572 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           YA L++ C+ R A+E  K +H  +   G      L   L+N++   + L  A +LFD++ 
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQ 193
           +RN+  W  MI  Y      + A+ L   M   G+ P+ FT+  VL+AC +L  +   ++
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H  +I+ G ESDVFV +ALID+YAK G + +A  VF+++  RD+V WNS++  ++QN  
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ 183

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNA 311
            DE+L L + M   G    + T    + A     LL  G ++H +  +  ++ +  +  A
Sbjct: 184 PDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTA 243

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+DMY K GS+  A S+F  + +K V+SW+ MI+G A +G++ EAL LF+ MK  ++ P+
Sbjct: 244 LMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMK-GKVLPD 302

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
           +IT VGVL ACSH G + +G  HF+SM   + I P  +HY+CMIDLLG  G+L+EA KLI
Sbjct: 303 HITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLI 362

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
            EM  EPDA  W ALL +CK+H N ++   A +K++ L+P D G Y++LSN+YA + KWD
Sbjct: 363 MEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWD 422

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
            VA +R  M  +G+ K   CSWIEV  ++HAF   D+SHP+ + I   LK   + +   G
Sbjct: 423 GVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAG 482

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           YAP    V  D+E ++K D +  HSE+LAI FGL+S + G  + I KNLRIC DCH   K
Sbjct: 483 YAPQVGSVFHDVEDDEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVAIK 542

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             +K+  + I IRD  RYHHF+DG CSCGD+W
Sbjct: 543 FISKITEREITIRDVNRYHHFKDGVCSCGDFW 574



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 186/375 (49%), Gaps = 35/375 (9%)

Query: 2   ILKAVSKLKWTKPSSQ--AR--QFSLTITPPVAS--------CNTITRNSSSLLDDFTR- 48
           +L++    K  +P  Q  AR  Q  ++  P +A+        CN++T N+  L D  ++ 
Sbjct: 7   LLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLT-NAHLLFDRISKR 65

Query: 49  -----------FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVH 97
                      + +      A+   + M+ +G+  D  T+  ++K C A  A+EE K +H
Sbjct: 66  NLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIH 125

Query: 98  NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND 157
             V+  G E + F+   L++M+ K   +E A+ +FD++ ER+VV W +M++ Y      D
Sbjct: 126 KDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPD 185

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALI 214
           ++L L   M   G++P   T+   + A     +L   ++LH    + GFES+  V++AL+
Sbjct: 186 ESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALM 245

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           D+YAK G +  A  +F  +  + +V WN++I G+A +   +EAL+L+K MK      D  
Sbjct: 246 DMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMK-GKVLPDHI 304

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFS 330
           T   VL AC+   LL  G ++H   +  D ++         ++D+   CG LE+A  +  
Sbjct: 305 TFVGVLAACSHGGLLNEG-KMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIM 363

Query: 331 RM-IQKDVISWSTMI 344
            M ++ D   W  ++
Sbjct: 364 EMRVEPDAGVWGALL 378


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/609 (40%), Positives = 358/609 (58%), Gaps = 38/609 (6%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D  T+  LIK       +   K  H  V+      + F++N L++ + K   L     +F
Sbjct: 135 DKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVF 194

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC------- 185
             +P R+VVSW +MI+A+      ++ALEL   M  + V+PN  T   VL AC       
Sbjct: 195 VNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFE 254

Query: 186 ---------------DSLIILRQL-----HCGIIKVG-------FESDVFVRSALIDIYA 218
                          +SL +   +      CG ++          E D+   + ++  YA
Sbjct: 255 FGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYA 314

Query: 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLT 277
           K+GE   A+ +F+ MP +D+  WN++I  + Q     EAL L+  ++ +  A  D+ TL 
Sbjct: 315 KIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLV 374

Query: 278 SVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQK 335
           S L AC  L  ++LG  +HV++ K    L   L  +L+DMYCKCG L+ A+ VF  + +K
Sbjct: 375 STLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERK 434

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
           DV  WS MI+GLA +G+ ++A+ LF  M+  ++KPN +T   +L ACSH G VE+G   F
Sbjct: 435 DVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFF 494

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN 455
             M+  YG+ PG +HY+CM+D+LGRAG L+EAV+LI +MP  P A  W ALLGAC +H N
Sbjct: 495 NQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHEN 554

Query: 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE 515
             LA  A  +++ L+P + G Y+LLSNIYA + KWD V+ +RK MR  G+ KEPGCS IE
Sbjct: 555 VVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIE 614

Query: 516 VNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQ-KEDSIQY 574
           V+  +H F V D+SHP   KI   L  ++ +L  +GY P+ +++LQ +E E  KE ++  
Sbjct: 615 VDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFL 674

Query: 575 HSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQD 634
           HSEKLAI FGL+S  Q + IRI KNLR+CGDCH+ AKL +K+ ++ I++RD  R+HHF++
Sbjct: 675 HSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFRE 734

Query: 635 GNCSCGDYW 643
           G+CSC DYW
Sbjct: 735 GHCSCMDYW 743



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 130/418 (31%), Positives = 211/418 (50%), Gaps = 44/418 (10%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQMPERNVVSWTTMI 147
            ++ K +H  +L  G   + F  + L+       F  L+ AQ +FDQ+P  N+ +W T+I
Sbjct: 48  TKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLI 107

Query: 148 SAYCDAKMNDKALELLIFMLREGVR-PNMFTYSAVLRAC---DSLIILRQLHCGIIKVGF 203
            AY  +    ++L + + ML +    P+ FT+  +++A    + L   +  H  +IKV  
Sbjct: 108 RAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLL 167

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
            SDVF+ ++LI  YAK GEL     VF  +P RD+V WNS+I  F Q    +EAL L++ 
Sbjct: 168 GSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQE 227

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGS 321
           M+      +  T+  VL AC   +  E G  VH ++   +    L L+NA+LDMY KCGS
Sbjct: 228 METQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGS 287

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLA-------------------------------QN 350
           +EDA  +F +M +KD++SW+TM+ G A                               Q 
Sbjct: 288 VEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQC 347

Query: 351 GYSQEALKLFESMKVSRI-KPNYITIVGVLFACSHAGFVE-DGWNHFKSMKKFYGIDPGR 408
           G  +EAL+LF  +++S+  KP+ +T+V  L AC+  G ++  GW H    K+  G+    
Sbjct: 348 GKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQ--GMKLNC 405

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
              + +ID+  + G LQ+A+ + H +  + D   W A++    +H +   AI    K+
Sbjct: 406 HLTTSLIDMYCKCGDLQKALMVFHSVERK-DVFVWSAMIAGLAMHGHGKDAIALFSKM 462



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 166/325 (51%), Gaps = 16/325 (4%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRD 237
           +++  C     L+Q+H  +++ G   D F  S LI   A      L  A+ VF+++P  +
Sbjct: 40  SLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPN 99

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           L  WN++I  +A +S+  ++L ++ RM  ++    D+ T   +++A + L  L  G   H
Sbjct: 100 LYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFH 159

Query: 297 VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
             V+K     D+ + N+L+  Y KCG L     VF  + ++DV+SW++MI+   Q G  +
Sbjct: 160 GMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPE 219

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSC 413
           EAL+LF+ M+   +KPN IT+VGVL AC+     E G W H  S  +   I       + 
Sbjct: 220 EALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVH--SYIERNRIGESLTLSNA 277

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL-GACKVHRNTDLAICAAKKILNLDP- 471
           M+D+  + G +++A +L  +MP E D V+W  +L G  K+         AA+ I +  P 
Sbjct: 278 MLDMYTKCGSVEDAKRLFDKMP-EKDIVSWTTMLVGYAKIGEYD-----AAQGIFDAMPN 331

Query: 472 QDPGTYILLSNIYANSQKWDEVAEV 496
           QD   +  L + Y    K  E  E+
Sbjct: 332 QDIAAWNALISAYEQCGKPKEALEL 356



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 155/330 (46%), Gaps = 41/330 (12%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A++    M+   V+ + +T   ++  C  +   E  + VH+++          L N +L
Sbjct: 220 EALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAML 279

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTM------------------------------ 146
           +M+ K   +E+A+ LFD+MPE+++VSWTTM                              
Sbjct: 280 DMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNA 339

Query: 147 -ISAYCDAKMNDKALELL-IFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKV 201
            ISAY       +ALEL     L +  +P+  T  + L AC  L  +     +H  I K 
Sbjct: 340 LISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQ 399

Query: 202 GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLY 261
           G + +  + ++LID+Y K G+L+ A  VF+ +  +D+ VW+++I G A +    +A+ L+
Sbjct: 400 GMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALF 459

Query: 262 KRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYC 317
            +M+      +  T T++L AC+ + L+E G +   + ++  + ++        ++D+  
Sbjct: 460 SKMQEDKVKPNAVTFTNILCACSHVGLVEEG-RTFFNQMELVYGVLPGVKHYACMVDILG 518

Query: 318 KCGSLEDAMSVFSRMIQKDVIS-WSTMISG 346
           + G LE+A+ +  +M      S W  ++  
Sbjct: 519 RAGLLEEAVELIEKMPMAPAASVWGALLGA 548



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 22/212 (10%)

Query: 57  RAMKAMHAMQ-CHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNIL 115
            A++  H +Q     + D VT    +  C    A++    +H ++   G +    L   L
Sbjct: 352 EALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSL 411

Query: 116 LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
           ++M+ K   L++A ++F  +  ++V  W+ MI+          A+ L   M  + V+PN 
Sbjct: 412 IDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNA 471

Query: 176 FTYSAVLRACDSLIILRQLHCGIIKVG---FESDVFVRSAL---------IDIYAKLGEL 223
            T++ +L AC         H G+++ G   F     V   L         +DI  + G L
Sbjct: 472 VTFTNILCACS--------HVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLL 523

Query: 224 RNAECVFNEMPTRDLV-VWNSIIGGFAQNSDV 254
             A  +  +MP      VW +++G    + +V
Sbjct: 524 EEAVELIEKMPMAPAASVWGALLGACTIHENV 555


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/612 (39%), Positives = 362/612 (59%), Gaps = 33/612 (5%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  GV  D V    ++  C    A+ +A+++ +++    F+ +  L   +++M+ K   
Sbjct: 250 MREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGC 309

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +E A+ +FD+M E+NV+SW+ MI+AY       KAL+L   ML  G+ P+  T +++L A
Sbjct: 310 VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYA 369

Query: 185 C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C    +L  +RQ+H      G   ++ V + L+  Y+    L +A  +F+ M  RD V W
Sbjct: 370 CINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSW 429

Query: 242 NSIIGGFAQNSD----------------------------VDEALNLYKRMKRAGFAADQ 273
           + ++GGFA+  D                             +E+L L+ +M+  G   D+
Sbjct: 430 SVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDK 489

Query: 274 STLTSVLRACTGLALLELGTQV--HVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
             + +V+ AC  L  +     +  ++   K+  D+IL  A++DM+ KCG +E A  +F R
Sbjct: 490 VAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDR 549

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           M +K+VISWS MI+    +G  ++AL LF  M  S I PN IT+V +L+ACSHAG VE+G
Sbjct: 550 MEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEG 609

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
              F  M + Y +    +HY+C++DLLGRAG+L EA+KLI  M  E D   W A LGAC+
Sbjct: 610 LRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACR 669

Query: 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGC 511
            H++  LA  AA  +L L PQ+PG YILLSNIYAN+ +W++VA+ R  M  R + K PG 
Sbjct: 670 THKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGW 729

Query: 512 SWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDS 571
           +WIEV+ + H F+V D++HP+  +I + LK L  KL  VGY PDTN+VL D++ E K   
Sbjct: 730 TWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGI 789

Query: 572 IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHH 631
           +  HSEKLAI FGL++  +   IRI KNLR+CGDCHTF KL + +  + I++RD  R+HH
Sbjct: 790 LYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHH 849

Query: 632 FQDGNCSCGDYW 643
           F++G CSCGDYW
Sbjct: 850 FKEGACSCGDYW 861



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/295 (32%), Positives = 156/295 (52%), Gaps = 24/295 (8%)

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
           + + VH      G      + N L+  +  +  L++A  LFD M  R+ VSW+ M+  + 
Sbjct: 96  QVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGF- 154

Query: 152 DAKMNDKALELLIF--MLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFV 209
            AK+ D       F  ++R G RP+ +T   V+RAC  L  L+                 
Sbjct: 155 -AKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQM---------------- 197

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
             AL+D+Y K  E+ +A  +F++M  RDLV W  +IGG+A+    +E+L L+++M+  G 
Sbjct: 198 --ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGV 255

Query: 270 AADQSTLTSVLRACTGLALLELGTQV--HVHVLKYDHDLILNNALLDMYCKCGSLEDAMS 327
             D+  + +V+ AC  L  +     +  ++   K+  D+IL  A++DMY KCG +E A  
Sbjct: 256 VPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESARE 315

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
           +F RM +K+VISWS MI+    +G  ++AL LF  M  S + P+ IT+  +L+AC
Sbjct: 316 IFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYAC 370



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 171/358 (47%), Gaps = 34/358 (9%)

Query: 172 RPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
           R N   Y + L  C +L  +RQ+H      G   ++ V + LI  Y+    L +A  +F+
Sbjct: 78  RLNPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFD 137

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
            M  RD V W+ ++GGFA+  D       ++ + R G   D  TL  V+RAC  L  L++
Sbjct: 138 GMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQM 197

Query: 292 GTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
                              AL+DMY KC  +EDA  +F +M ++D+++W+ MI G A+ G
Sbjct: 198 -------------------ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECG 238

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG--WNHFKSMKKF-YGIDPGR 408
            + E+L LFE M+   + P+ + +V V+FAC+  G +      + +   KKF   +  G 
Sbjct: 239 KANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG- 297

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
              + MID+  + G ++ A ++   M  E + ++W A++ A   H     A+   + +L+
Sbjct: 298 ---TAMIDMYAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQGRKALDLFRMMLS 353

Query: 469 LDPQDPGTYILLSNIYA--NSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFN 524
                P    L S +YA  N +   +V +V       G+ +    + I  NK +H ++
Sbjct: 354 -SGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQ----NLIVANKLVHFYS 406



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 178/417 (42%), Gaps = 74/417 (17%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           + Y     +A+     M   G+  D +T A L+  C+    + + + VH      G    
Sbjct: 335 YGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQN 394

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY------------------ 150
             + N L++ +  +  L++A  LFD M  R+ VSW+ M+  +                  
Sbjct: 395 LIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIR 454

Query: 151 CDAKMNDKAL--------ELLIF--MLREGVRPNMFTYSAVLRACDSLIIL---RQLHCG 197
           C A+ ++  L         L++F  M  EGV P+      V+ AC  L  +   R +   
Sbjct: 455 CGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDY 514

Query: 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEA 257
           I +  F+ DV + +A+ID++AK G + +A  +F+ M  ++++ W+++I  +  +    +A
Sbjct: 515 IQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKA 574

Query: 258 LNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYC 317
           L+L+  M R+G   ++ TL S+L AC+                                 
Sbjct: 575 LDLFPMMLRSGILPNKITLVSLLYACS--------------------------------- 601

Query: 318 KCGSLEDAMSVFSRM-----IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
             G +E+ +  FS M     ++ DV  ++ ++  L + G   EALKL ESM V + +  +
Sbjct: 602 HAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLW 661

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
              +G   AC     V        S+ +    +PG  HY  + ++   AG+ ++  K
Sbjct: 662 GAFLG---ACRTHKDVVLAEKAATSLLELQPQNPG--HYILLSNIYANAGRWEDVAK 713


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/580 (39%), Positives = 359/580 (61%), Gaps = 6/580 (1%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G    + TY  L+  C+   ++   K V N++++ GFEP+ +++N +L MHVK  L+ +A
Sbjct: 113 GYGVGASTYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDA 172

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + LFD+MPE++V SW TM+    D     +A  L + M +E       T++ ++RA   L
Sbjct: 173 RKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRTFATMIRASAGL 232

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
            ++   +Q+H   +K G   D FV  ALID+Y+K G + +A CVF++MP +  V WNSII
Sbjct: 233 GLVQVGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSII 292

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YD 303
             +A +   +EAL+LY  M+ +G   D  T++ V+R C  LA LE   Q H  +++  + 
Sbjct: 293 ASYALHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFA 352

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D++ N AL+D Y K G +EDA  VF+RM  K+VISW+ +I+G   +G  QEA+++FE M
Sbjct: 353 TDIVANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQM 412

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
               + P ++T + VL ACS++G  + GW  F SMK+ + + P   HY+CMI+LLGR   
Sbjct: 413 LQEGVTPTHVTFLAVLSACSYSGLSQRGWEIFYSMKRDHKVKPRAMHYACMIELLGRESL 472

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L EA  LI   P++P A  W ALL AC++H+N +L   AA+K+  ++P+    YI+L N+
Sbjct: 473 LDEAYALIRTAPFKPTANMWAALLTACRMHKNLELGKLAAEKLYGMEPEKLCNYIVLLNL 532

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           Y +S K  E A + +T++ +G+   P CSW+EV KQ +AF   D SH Q  +I + + +L
Sbjct: 533 YNSSGKLKEAAGILQTLKKKGLRMLPACSWVEVKKQPYAFLCGDKSHSQTKEIYQKVDNL 592

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
           + ++   GYA +   +L D++ E+++  ++YHSEKLAI FGL++      ++I +  R+C
Sbjct: 593 MVEICKHGYAEENETLLPDVD-EEEQRILKYHSEKLAIAFGLINTPHWTPLQITQGHRVC 651

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GDCH+  KL A +  + IV+RD  R+HHF++G+CSCGDYW
Sbjct: 652 GDCHSAIKLIAMVTGREIVVRDASRFHHFRNGSCSCGDYW 691



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 126/287 (43%), Gaps = 43/287 (14%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M+  G   D  T + +I+ C    ++E AK  H  ++  GF  +      L++
Sbjct: 304 ALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFATDIVANTALVD 363

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            + K+  +E+A+ +F++M  +NV+SW  +I+ Y +     +A+E+   ML+EGV P   T
Sbjct: 364 FYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPTHVT 423

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           + AVL AC         + G+ + G+E                        +F  M  RD
Sbjct: 424 FLAVLSACS--------YSGLSQRGWE------------------------IFYSM-KRD 450

Query: 238 LVV------WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
             V      +  +I    + S +DEA   Y  ++ A F    +   ++L AC     LEL
Sbjct: 451 HKVKPRAMHYACMIELLGRESLLDEA---YALIRTAPFKPTANMWAALLTACRMHKNLEL 507

Query: 292 GTQVHVHVLKYDHDLILNN-ALLDMYCKCGSLEDAMSVFSRMIQKDV 337
           G      +   + + + N   LL++Y   G L++A  +   + +K +
Sbjct: 508 GKLAAEKLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGILQTLKKKGL 554


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/603 (40%), Positives = 361/603 (59%), Gaps = 40/603 (6%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           +S+++  L+   +    +EEA+     +     + E    N L+  +VK ++L +A+ LF
Sbjct: 156 NSISWNGLLAAYVRSGRLEEAR----RLFESKSDWELISCNCLMGGYVKRNMLGDARQLF 211

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL---------- 182
           DQ+P R+++SW TMIS Y      D  L     +  E    ++FT++A++          
Sbjct: 212 DQIPVRDLISWNTMISGYA----QDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLD 267

Query: 183 ---RACDSLIILRQLHCGIIKVG-------------FESDVFVR----SALIDIYAKLGE 222
              R  D +   R++   ++  G             FE   F      + +I  Y + G+
Sbjct: 268 EARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGD 327

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           L  A  +F+ MP RD V W +II G+AQN   +EA+N+   MKR G + ++ST    L A
Sbjct: 328 LAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSA 387

Query: 283 CTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           C  +A LELG QVH  V++  Y+   ++ NAL+ MYCKCG +++A  VF  +  KD++SW
Sbjct: 388 CADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSW 447

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           +TM++G A++G+ ++AL +FESM  + +KP+ IT+VGVL ACSH G  + G  +F SM K
Sbjct: 448 NTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNK 507

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            YGI P  +HY+CMIDLLGRAG L+EA  LI  MP+EPDA TW ALLGA ++H N +L  
Sbjct: 508 DYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGE 567

Query: 461 CAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQI 520
            AA+ +  ++P + G Y+LLSN+YA S +W +V+++R  MR  G+ K PG SW+EV  +I
Sbjct: 568 QAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKI 627

Query: 521 HAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLA 580
           H F V D  HP+  +I   L+ L  K+   GY   T  VL D+E E+K+  ++YHSEKLA
Sbjct: 628 HTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEKKHMLKYHSEKLA 687

Query: 581 IVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
           + FG++++  GK IR+ KNLR+C DCH   K  +K+  + I++RD  RYHHF +G CSC 
Sbjct: 688 VAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGICSCR 747

Query: 641 DYW 643
           DYW
Sbjct: 748 DYW 750



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 109/433 (25%), Positives = 191/433 (44%), Gaps = 63/433 (14%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           +P T      ++ H++    + A  +FD MP RN VS+  MIS Y        A +L   
Sbjct: 30  DPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDK 89

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           M  +                                    D+F  + ++  YA+   LR+
Sbjct: 90  MPHK------------------------------------DLFSWNLMLTGYARNRRLRD 113

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F+ MP +D+V WN+++ G+ ++  VDEA +++ RM      +    L + +R+   
Sbjct: 114 ARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRS--- 170

Query: 286 LALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
              LE   ++     K D +LI  N L+  Y K   L DA  +F ++  +D+ISW+TMIS
Sbjct: 171 -GRLEEARRLFES--KSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMIS 227

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           G AQ+G   +A +LFE   V  +     T   +++A    G +++    F  M +     
Sbjct: 228 GYAQDGDLSQARRLFEESPVRDV----FTWTAMVYAYVQDGMLDEARRVFDEMPQ----- 278

Query: 406 PGRE-HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL-GACKVHRNTDLAICAA 463
             RE  Y+ MI    +  ++    +L  EMP+ P+  +W  ++ G C+   N DLA   A
Sbjct: 279 -KREMSYNVMIAGYAQYKRMDMGRELFEEMPF-PNIGSWNIMISGYCQ---NGDLA--QA 331

Query: 464 KKILNLDPQ-DPGTYILLSNIYANSQKWDEVAEVRKTMRARG--ITKEPGCSWIEVNKQI 520
           + + ++ PQ D  ++  +   YA +  ++E   +   M+  G  + +   C  +     I
Sbjct: 332 RNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADI 391

Query: 521 HAFNVADSSHPQI 533
            A  +    H Q+
Sbjct: 392 AALELGKQVHGQV 404



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 176/380 (46%), Gaps = 50/380 (13%)

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           + F  N++L  + +   L +A++LFD MPE++VVSW  M+S Y  +   D+A ++   M 
Sbjct: 94  DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMP 153

Query: 168 REGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFES----DVFVRSALIDIYAKLGEL 223
            +    N  +++ +L A      +R       +  FES    ++   + L+  Y K   L
Sbjct: 154 HK----NSISWNGLLAA-----YVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNML 204

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
            +A  +F+++P RDL+ WN++I G+AQ+ D+ +A  L++         D  T T+++ A 
Sbjct: 205 GDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESP----VRDVFTWTAMVYAY 260

Query: 284 TGLALLELGTQV------------HVHVLKYDHDLILN-----------------NALLD 314
               +L+   +V            +V +  Y     ++                 N ++ 
Sbjct: 261 VQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMIS 320

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
            YC+ G L  A ++F  M Q+D +SW+ +I+G AQNG  +EA+ +   MK      N  T
Sbjct: 321 GYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRST 380

Query: 375 IVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
               L AC+    +E G   H + ++   G + G    + ++ +  + G + EA  +   
Sbjct: 381 FCCALSACADIAALELGKQVHGQVVRT--GYEKGCLVGNALVGMYCKCGCIDEAYDVFQG 438

Query: 434 MPYEPDAVTWRALLGACKVH 453
           + ++ D V+W  +L     H
Sbjct: 439 VQHK-DIVSWNTMLAGYARH 457



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 145/323 (44%), Gaps = 35/323 (10%)

Query: 191 LRQLHCGIIKVG---------FESDVFVR-SALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           LRQLH  I  V          FE    V+ +  I  + + G    A CVF+ MP R+ V 
Sbjct: 7   LRQLHSSIFHVQRPTNYPKPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVS 66

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           +N++I G+ +N+    A +L+ +M      +    LT   R         L     +   
Sbjct: 67  YNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARN------RRLRDARMLFDS 120

Query: 301 KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
             + D++  NA+L  Y + G +++A  VF RM  K+ ISW+ +++   ++G  +EA +LF
Sbjct: 121 MPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLF 180

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE--HYSCMIDLL 418
           ES      K ++  I      C   G+V+   N     ++ +   P R+   ++ MI   
Sbjct: 181 ES------KSDWELIS---CNCLMGGYVKR--NMLGDARQLFDQIPVRDLISWNTMISGY 229

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD-PGTY 477
            + G L +A +L  E P   D  TW A++ A       D  +  A+++ +  PQ    +Y
Sbjct: 230 AQDGDLSQARRLFEESPVR-DVFTWTAMVYAYV----QDGMLDEARRVFDEMPQKREMSY 284

Query: 478 ILLSNIYANSQKWDEVAEVRKTM 500
            ++   YA  ++ D   E+ + M
Sbjct: 285 NVMIAGYAQYKRMDMGRELFEEM 307



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 5/194 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           AM  +  M+  G   +  T+   +  C    A+E  K VH  V+  G+E    + N L+ 
Sbjct: 362 AMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVG 421

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   ++EA  +F  +  +++VSW TM++ Y       +AL +   M+  GV+P+  T
Sbjct: 422 MYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEIT 481

Query: 178 YSAVLRACDSLIILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
              VL AC    +  +     H      G   +    + +ID+  + G L  A+ +   M
Sbjct: 482 MVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNM 541

Query: 234 PTR-DLVVWNSIIG 246
           P   D   W +++G
Sbjct: 542 PFEPDAATWGALLG 555


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/570 (40%), Positives = 358/570 (62%), Gaps = 5/570 (0%)

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
           E++K C  R  + + K  H  +L  G + +    NIL+NM+ K   ++ A+ +FD+MP R
Sbjct: 69  EILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSR 128

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LH 195
           ++VSW TMI +       ++AL+LL+ M REG   + FT S+VL AC +   L +   LH
Sbjct: 129 SLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLH 188

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
              IK   + +VFV +AL+D+YAK G +++A CVF  MP R +V W+S+  G+ QN   +
Sbjct: 189 AFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYE 248

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
           +AL L+++    G   DQ  ++SV+ AC GLA +  G QV+  + K  +  ++ + ++L+
Sbjct: 249 QALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLI 308

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           DMY KCG +E++  VF  + +++V+ W+ MISGL+++  S E + LFE M+   + PN +
Sbjct: 309 DMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDV 368

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
           T V VL AC H G V+ G  +F  M K + + P   HYSCM+D L RAG++ EA  LI +
Sbjct: 369 TFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISK 428

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
           +P+   A  W +LL +C+ H N +LA  AAKK+ +++P + G Y+LLSN+YA + KWDEV
Sbjct: 429 LPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEV 488

Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYA 553
           A++RK ++   + KE G SWIE+  ++H F V + +HP+I +I   L  ++ +L  +GY 
Sbjct: 489 AKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYK 548

Query: 554 PDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLT 613
            +T + L  +    K++ +++HSEKLA   GL+ L     IRI KNLRICGDCH+F KL 
Sbjct: 549 VETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLA 608

Query: 614 AKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +K   + +++RD  R+HHF++G CSCGD+W
Sbjct: 609 SKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 167/303 (55%), Gaps = 9/303 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A+  +  MQ  G      T + ++  C A+ A+ E +L+H   +    +   F+   LL
Sbjct: 148 EALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALL 207

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +++ K  L+++A  +F+ MP+R+VV+W++M + Y   +M ++AL L       G++ + F
Sbjct: 208 DVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQF 267

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
             S+V+ AC  L  +   +Q++  + K GF S++FV S+LID+YAK G +  +  VF ++
Sbjct: 268 LMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDV 327

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             R++V+WN++I G ++++   E + L+++M++ G + +  T  SVL AC  + L++ G 
Sbjct: 328 EKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKG- 386

Query: 294 QVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLA 348
           Q +  ++  +H L  N    + ++D   + G + +A  + S++        W ++++   
Sbjct: 387 QKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCR 446

Query: 349 QNG 351
            +G
Sbjct: 447 THG 449


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/619 (39%), Positives = 359/619 (57%), Gaps = 44/619 (7%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M    ++ D  T+  L+K      A++  K++ NH +  GF+   F+    ++M     L
Sbjct: 98  MLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRL 157

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           ++ A+ +FD      VV+W  M+S Y   K   K+  L I M + GV PN  T   +L A
Sbjct: 158 VDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSA 217

Query: 185 CDSLI-------ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           C  L        I + ++ GI+    E ++ + + LID++A  GE+  A+ VF+ M  RD
Sbjct: 218 CSKLKDLEGGKHIYKYINGGIV----ERNLILENVLIDMFAACGEMDEAQSVFDNMKNRD 273

Query: 238 LVVWNSIIGGFAQNSDVD-------------------------------EALNLYKRMKR 266
           ++ W SI+ GFA    +D                               EAL L++ M+ 
Sbjct: 274 VISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQM 333

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLED 324
           +    D+ T+ S+L AC  L  LELG  V  ++ K    +D  + NAL+DMY KCG++  
Sbjct: 334 SNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGK 393

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           A  VF  M  KD  +W+ MI GLA NG+ +EAL +F +M  + I P+ IT +GVL AC+H
Sbjct: 394 AKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTH 453

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           AG VE G + F SM   +GI P   HY CM+DLLGRAG+L+EA ++I  MP +P+++ W 
Sbjct: 454 AGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWG 513

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
           +LLGAC+VH+N  LA  AAK+IL L+P++   Y+LL NIYA  ++W+ + +VRK M  RG
Sbjct: 514 SLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERG 573

Query: 505 ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLE 564
           I K PGCS +E+N  ++ F   D SHPQ  +I   L++++Q L+  GY+PDT+ V  DL 
Sbjct: 574 IKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQDLIKAGYSPDTSEVFLDLG 633

Query: 565 GEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIR 624
            E KE ++  HSEKLAI + L+S   G TIRI KNLR+C DCH  AKL ++  N+ +++R
Sbjct: 634 EEDKETALYRHSEKLAIAYALISSGPGITIRIVKNLRMCVDCHHMAKLVSEAYNRELIVR 693

Query: 625 DPIRYHHFQDGNCSCGDYW 643
           D  R+HHF+ G+CSC ++W
Sbjct: 694 DKTRFHHFRHGSCSCNNFW 712



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 206/433 (47%), Gaps = 55/433 (12%)

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNM---HVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           + K +H+H +  G   +      ++     H    ++   QV FD +P+  +  W TMI 
Sbjct: 22  QLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQV-FDAIPQPTLFIWNTMIK 80

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFES 205
            Y         + + + ML   ++P+ FT+  +L+     + L   + L    +K GF+S
Sbjct: 81  GYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDS 140

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           ++FV+ A I +++    +  A  VF+     ++V WN ++ G+ +     ++  L+  M+
Sbjct: 141 NLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEME 200

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY------DHDLILNNALLDMYCKC 319
           + G + +  TL  +L AC+ L  LE G     H+ KY      + +LIL N L+DM+  C
Sbjct: 201 KRGVSPNSVTLVLMLSACSKLKDLEGGK----HIYKYINGGIVERNLILENVLIDMFAAC 256

Query: 320 GSLEDAMSVFSRMIQKDVISWSTMISGLAQ--------------------------NGYS 353
           G +++A SVF  M  +DVISW+++++G A                           +GY 
Sbjct: 257 GEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYL 316

Query: 354 Q-----EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPG 407
           +     EAL LF  M++S +KP+  T+V +L AC+H G +E G W   K+      I   
Sbjct: 317 RMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEW--VKTYIDKNSIKND 374

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
               + +ID+  + G + +A K+  EM +  D  TW A++    ++ + + A+     ++
Sbjct: 375 TFVGNALIDMYFKCGNVGKAKKVFKEM-HHKDKFTWTAMIVGLAINGHGEEALAMFSNMI 433

Query: 468 --NLDPQDPGTYI 478
             ++ P D  TYI
Sbjct: 434 EASITP-DEITYI 445



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 138/284 (48%), Gaps = 6/284 (2%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRD 237
           ++L  C S+  L+Q+H   IK+G  SD   +  +I      + G++  A  VF+ +P   
Sbjct: 12  SLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPT 71

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           L +WN++I G+++ +     +++Y  M  +    D+ T   +L+  T    L+ G  +  
Sbjct: 72  LFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLN 131

Query: 298 HVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           H +K  +D +L +  A + M+  C  ++ A  VF      +V++W+ M+SG  +    ++
Sbjct: 132 HAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKK 191

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           +  LF  M+   + PN +T+V +L ACS    +E G + +K +     ++      + +I
Sbjct: 192 SKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGI-VERNLILENVLI 250

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
           D+    G++ EA  +   M    D ++W +++         DLA
Sbjct: 251 DMFAACGEMDEAQSVFDNMK-NRDVISWTSIVTGFANIGQIDLA 293



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 107/239 (44%), Gaps = 18/239 (7%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++D + R         A+     MQ   V+ D  T   ++  C    A+E  + V  +
Sbjct: 309 TAMIDGYLRM---NRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTY 365

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           +     + +TF+ N L++M+ K   + +A+ +F +M  ++  +WT MI         ++A
Sbjct: 366 IDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEA 425

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKV----GFESDVFVRSALID 215
           L +   M+   + P+  TY  VL AC    ++ +     I +    G + +V     ++D
Sbjct: 426 LAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVD 485

Query: 216 IYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           +  + G L  A  V   MP + + +VW S++G          A  ++K ++ A  AA Q
Sbjct: 486 LLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLG----------ACRVHKNVQLAEMAAKQ 534


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/601 (39%), Positives = 371/601 (61%), Gaps = 7/601 (1%)

Query: 50   CY-QRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
            CY + D P   ++    M+    + +      +++  +   +V   K +H   +   ++ 
Sbjct: 606  CYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDT 665

Query: 108  ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
            E  +   LL+M+ K   +E+A++ F+ +   +V+ W+ MIS Y     N++A EL I M+
Sbjct: 666  ERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMM 725

Query: 168  REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
            R  V PN F+ S+VL+AC ++ +L   +Q+H   IK+G ES++FV +ALID+YAK  ++ 
Sbjct: 726  RSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDME 785

Query: 225  NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
            ++  +F+ +   + V WN+II G++++   + AL++++ M+ A   + Q T +SVLRAC 
Sbjct: 786  SSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACA 845

Query: 285  GLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
              A +    QVH  + K  ++ D I++N+L+D Y KCG + DA  +F  + + D++SW+ 
Sbjct: 846  STASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNA 905

Query: 343  MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
            +ISG A +G +  A +LF+ M  + IK N IT V +L  C   G V  G + F SM+  +
Sbjct: 906  IISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDH 965

Query: 403  GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            GI+P  EHY+C++ LLGRAG+L +A+  I ++P  P A+ WRALL +C VH+N +L   +
Sbjct: 966  GIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFS 1025

Query: 463  AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
            A+K+L ++PQD  TY+LLSN+Y+ +   D+VA  RK+MR  G+ KEPG SW+E+  ++HA
Sbjct: 1026 AEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHA 1085

Query: 523  FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
            F+V    HP +  IN  L+ L  K +  GY PDT+ VL DLE EQK   +  HSE+LA+ 
Sbjct: 1086 FSVGSEDHPCMRVINAMLEWLNLKAIREGYVPDTDEVLHDLEEEQKVRMLWVHSERLALA 1145

Query: 583  FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
            +GL+    G  IRI KNLR C DCH   K+ +K+  Q I++RD  R+HHF++G CSCGDY
Sbjct: 1146 YGLVMTPPGHPIRIMKNLRSCLDCHAIFKVISKIVKQEIIVRDINRFHHFEEGTCSCGDY 1205

Query: 643  W 643
            W
Sbjct: 1206 W 1206



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/386 (31%), Positives = 204/386 (52%), Gaps = 17/386 (4%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVL-SGGFEP-ETFLVNILLNMHVKFSLLEEAQV 130
           DS  YA L++ C+AR      + VH HV+ SGG    + F  N+LLNM+ K      A  
Sbjct: 427 DSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHR 486

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR---ACDS 187
           +FD +PERN+VS+ T++  +      ++A  L   +  EG   N F  + VL+   A D+
Sbjct: 487 VFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDT 546

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L +   +H    K+G + + FV SALID Y+  G + +A  VF+ +  +D V W +++  
Sbjct: 547 LGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSC 606

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHD 305
           +++N   +  L ++ +M+ A    +   LTSVLRA   L+ + LG  +H   +K  YD +
Sbjct: 607 YSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTE 666

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
             +  ALLDMY KCG++EDA   F  +   DVI WS MIS  AQ   +++A +LF  M  
Sbjct: 667 RHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMR 726

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY----SCMIDLLGRA 421
           S + PN  ++  VL AC++   ++ G    K +   + I  G E      + +IDL  + 
Sbjct: 727 SSVSPNEFSLSSVLQACANMPLLDLG----KQIHN-HAIKIGHESELFVGNALIDLYAKC 781

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALL 447
             ++ ++++   +  + + V+W  ++
Sbjct: 782 SDMESSLEIFSSL-RDVNEVSWNTII 806



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 218/429 (50%), Gaps = 9/429 (2%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN  S +        + +   A      ++  G   +      ++K  +A   +  A  V
Sbjct: 494 RNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGV 553

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H      G +   F+ + L++ +    ++ +A+ +FD +  ++ V+WT M+S Y +    
Sbjct: 554 HACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCP 613

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSAL 213
           +  L++   M     + N F  ++VLRA     S+++ + +H   +K  ++++  V  AL
Sbjct: 614 ENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGAL 673

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           +D+YAK G + +A   F  +   D+++W+ +I  +AQ +  ++A  L+ RM R+  + ++
Sbjct: 674 LDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNE 733

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSR 331
            +L+SVL+AC  + LL+LG Q+H H +K  H  +L + NAL+D+Y KC  +E ++ +FS 
Sbjct: 734 FSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSS 793

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC-SHAGFVED 390
           +   + +SW+T+I G +++G+ + AL +F  M+ + +    +T   VL AC S A     
Sbjct: 794 LRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHV 853

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G  H    K  +  D    +   +ID   + G +++A + I E   E D V+W A++   
Sbjct: 854 GQVHCLIEKSTFNSDTIVSN--SLIDSYAKCGCIRDA-REIFETLKECDLVSWNAIISGY 910

Query: 451 KVHRNTDLA 459
            VH    +A
Sbjct: 911 AVHGQAAMA 919


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/618 (37%), Positives = 373/618 (60%), Gaps = 7/618 (1%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEE 92
           N + R+  +     + F     +  A++    M+   V  DSVT + L+  C+    +  
Sbjct: 199 NMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIIS 258

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
             L+H + +  G E + F+ N L+NM+ KF  L  A+ +F+QM  R++VSW ++++A+  
Sbjct: 259 GVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQ 318

Query: 153 AKMNDKALELLIFMLREGVRPNMFTY---SAVLRACDSLIILRQLHCGIIK-VGFESDVF 208
            K    AL +   M   GV P++ T    ++V     + +  R +H  + +   F  D+ 
Sbjct: 319 NKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIA 378

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR-A 267
           + +A+ID+YAKLG + +A  VF  +P +D++ WNS+I G++QN   +EA+++Y  M+  +
Sbjct: 379 LGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYS 438

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDA 325
           G   +Q T  S+L A + L  L+ G + H  ++K     D+ ++  L+DMY KCG L DA
Sbjct: 439 GAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADA 498

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
           +S+F  +  +  +SW+ +IS    +GY  +A+KLF+ M+   +KP++IT V +L ACSH+
Sbjct: 499 LSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHS 558

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G V++G   F+ M++ YGI P  +HY CM+DL GRAG L++A   +  MP  PD   W A
Sbjct: 559 GLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGA 618

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LLGAC++H N +L    +  +L ++ ++ G Y+LLSNIYA    W+ V EVR   R RG+
Sbjct: 619 LLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGL 678

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            K PG S IEV+K+I  F   + +HP+ ++I   L++L  K+  +GY PD N+VLQD+E 
Sbjct: 679 KKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVED 738

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           ++KE+ +  HSE+LA+ FG++S     T++I KNLR+CGDCH   K  +K+  + I++RD
Sbjct: 739 DEKENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRD 798

Query: 626 PIRYHHFQDGNCSCGDYW 643
             R+HHF+DG CSCGDYW
Sbjct: 799 SNRFHHFKDGVCSCGDYW 816



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 216/425 (50%), Gaps = 22/425 (5%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
           V  AK +H  ++  G     FL   L+N +     +  A++ FDQ+  ++V +W +MISA
Sbjct: 56  VHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISA 115

Query: 150 YCDAKMNDKALELLI-FMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVF 208
           Y        A++    F+    ++ + +T+  V+RAC +L   R++HC ++K+GFE DV+
Sbjct: 116 YARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDDGRKVHCLVLKLGFECDVY 175

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           + ++ I  Y++ G +  A  +F+ M  RD+  WN++I GF  N  V EAL ++  M+   
Sbjct: 176 IAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKS 235

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAM 326
            + D  T++S+L  C  L  +  G  +HV+ +K   + DL + NAL++MY K G L  A 
Sbjct: 236 VSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAE 295

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
           ++F++M  +D++SW+++++   QN     AL ++  M    + P+ +T+V +    +  G
Sbjct: 296 TIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELG 355

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHY-------SCMIDLLGRAGKLQEAVKLIHEMPYEPD 439
                  +F S +  +G    R  +       + +ID+  + G +  A K+   +P + D
Sbjct: 356 -------NFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVK-D 407

Query: 440 AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKT 499
            ++W +L+     +   + AI     +       P     +S + A+SQ    +  +++ 
Sbjct: 408 VISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQ----LGALKQG 463

Query: 500 MRARG 504
           M+A G
Sbjct: 464 MKAHG 468



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 151/296 (51%), Gaps = 16/296 (5%)

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           ++ +   C  + + +QLH  ++  G    +F+ + LI+ YA LG++ +A   F+++ T+D
Sbjct: 46  FNRIFLYCTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKD 105

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF-AADQSTLTSVLRACTGLALLELGTQVH 296
           +  WNS+I  +A+      A++ +       F  +D  T   V+RAC     L+ G +VH
Sbjct: 106 VYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGN---LDDGRKVH 162

Query: 297 VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
             VLK  ++ D+ +  + +  Y + G +  A ++F  M+ +D+ +W+ MISG   NG   
Sbjct: 163 CLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVA 222

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH--YS 412
           EAL++F+ M+   +  + +TI  +L  C     +  G      +   Y I  G E   + 
Sbjct: 223 EALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISG-----VLIHVYAIKLGLEFDLFV 277

Query: 413 C--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
           C  +I++  + G+L+ A  + ++M    D V+W +LL A + ++   +A+    K+
Sbjct: 278 CNALINMYAKFGELRSAETIFNQMKVR-DIVSWNSLLAAFEQNKKPVIALGVYNKM 332


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/592 (40%), Positives = 360/592 (60%), Gaps = 5/592 (0%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           RA++ +  M+  G+  +  T + ++K C    A +  + +H  ++    + + ++   L+
Sbjct: 286 RAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLV 345

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   L++A+ +FD M  R+++    +IS       +D+AL L   + +EG+  N  
Sbjct: 346 DMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRT 405

Query: 177 TYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T +AVL++  SL      RQ+H   +K+GF  D  V + LID Y K   L +A  VF E 
Sbjct: 406 TLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEEC 465

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
            + D++   S+I   +Q    + A+ L+  M R G   D   L+S+L AC  L+  E G 
Sbjct: 466 SSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGK 525

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           QVH H++K  +  D    NAL+  Y KCGS+EDA   FS + ++ V+SWS MI GLAQ+G
Sbjct: 526 QVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHG 585

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           + + AL+LF  M    I PN+IT+  VL AC+HAG V++   +F SMK+ +GID   EHY
Sbjct: 586 HGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHY 645

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           SCMIDLLGRAGKL +A++L++ MP++ +A  W ALLGA +VH++ +L   AA+K+  L+P
Sbjct: 646 SCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEP 705

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
           +  GT++LL+N YA++  W+EVA+VRK M+   I KEP  SWIEV  ++H F V D SHP
Sbjct: 706 EKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHP 765

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
              +I   L  L   +   G+ P+ +  L DL+  +KE  + +HSE+LA+ F L+S   G
Sbjct: 766 MTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPG 825

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             IR++KNLRIC DCH   K  +K+ ++ I+IRD  R+HHF+DG CSCGDYW
Sbjct: 826 APIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 135/439 (30%), Positives = 219/439 (49%), Gaps = 49/439 (11%)

Query: 55  LPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL---VHNHVLSGGFEPETF 110
           LPR A++A H M+  GV  +      ++KC      V +A+L   VH   ++ GF  + F
Sbjct: 83  LPRSAIQAFHGMRAEGVCCNEFALPVVLKC------VPDARLGAQVHAMAMATGFGSDVF 136

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQM-PERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
           + N L+ M+  F  +++A+ +F++   ERN VSW  ++SAY        A+++   M+  
Sbjct: 137 VANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 170 GVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           G++P  F +S V+ AC    ++   RQ+H  ++++G++ DVF  +AL+D+Y K+G +  A
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIA 256

Query: 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
             +F +MP  D+V WN++I G   N     A+ L  +MK +G   +  TL+S+L+AC+G 
Sbjct: 257 SVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGA 316

Query: 287 ALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
              +LG Q+H  ++K   D D  +   L+DMY K   L+DA  VF  M  +D+I  + +I
Sbjct: 317 GAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALI 376

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS-----------HA-----GFV 388
           SG +  G   EAL LF  ++   +  N  T+  VL + +           HA     GF+
Sbjct: 377 SGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFI 436

Query: 389 EDGWNHFKSMKKFYGI----DPGREHYSC----------MIDLLGRAGKLQEAVKLIHEM 434
            D       +  ++      D  R    C          MI  L +    + A+KL  EM
Sbjct: 437 FDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEM 496

Query: 435 ---PYEPDAVTWRALLGAC 450
                EPD     +LL AC
Sbjct: 497 LRKGLEPDPFVLSSLLNAC 515



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 188/371 (50%), Gaps = 7/371 (1%)

Query: 85  LARHAVEEAKLVHNHVLSGGFEPETF--LVNILLNMHVKFSLLEEAQVLFDQMPERNVVS 142
           L R+A  +A L   H+ +   +  +     N L++ + K      A+ +FD++P+   VS
Sbjct: 11  LTRYAAAQALLPGAHLHASLLKSGSLASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVS 70

Query: 143 WTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVG 202
           W+++++AY +  +   A++    M  EGV  N F    VL+      +  Q+H   +  G
Sbjct: 71  WSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATG 130

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPT-RDLVVWNSIIGGFAQNSDVDEALNLY 261
           F SDVFV +AL+ +Y   G + +A  VFNE  + R+ V WN ++  + +N    +A+ ++
Sbjct: 131 FGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVF 190

Query: 262 KRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKC 319
             M  +G    +   + V+ ACTG   +E G QVH  V++  YD D+   NAL+DMY K 
Sbjct: 191 GEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKM 250

Query: 320 GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL 379
           G ++ A  +F +M   DV+SW+ +ISG   NG+   A++L   MK S + PN  T+  +L
Sbjct: 251 GRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSIL 310

Query: 380 FACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD 439
            ACS AG  + G      M K    D        ++D+  +   L +A K+   M +  D
Sbjct: 311 KACSGAGAFDLGRQIHGFMIK-ANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM-FHRD 368

Query: 440 AVTWRALLGAC 450
            +   AL+  C
Sbjct: 369 LILCNALISGC 379



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 10/186 (5%)

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLE 323
           M+ AG  + Q T     R     ALL  G  +H  +LK        N L+  Y KC    
Sbjct: 1   MRSAGTISQQLT-----RYAAAQALLP-GAHLHASLLKSGSLASFRNHLISFYSKCRRPC 54

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
            A  VF  +     +SWS++++  + NG  + A++ F  M+   +  N   +  VL    
Sbjct: 55  CARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVP 114

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
            A        H  +M   +G D      + ++ + G  G + +A ++ +E   E +AV+W
Sbjct: 115 DARL--GAQVHAMAMATGFGSDVFVA--NALVAMYGGFGFMDDARRVFNEADSERNAVSW 170

Query: 444 RALLGA 449
             L+ A
Sbjct: 171 NGLMSA 176


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/592 (38%), Positives = 355/592 (59%), Gaps = 6/592 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++ +  MQ  G R DS+T   ++        +   K +H + +  GF     +   L 
Sbjct: 231 KALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALA 290

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   +E A+++FD M ++ VVSW +M+  Y      +KA+ +   ML EG+ P   
Sbjct: 291 DMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGV 350

Query: 177 TYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T    L AC  L  L +   +H  + ++   SD+ V ++LI +Y+K   +  A  +FN +
Sbjct: 351 TIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNL 410

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             R  V WN++I G+AQN  V EALN +  MK  G   D  T+ SV+ A   L++     
Sbjct: 411 NGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAK 470

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
            +H  +++   D ++ +  AL+DMY KCG++  A  +F  +  + VI+W+ MI G   +G
Sbjct: 471 WIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHG 530

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
             + AL LF+ MK   ++PN IT + V+ ACSH+G V++G  HFKSMK+ YG++P  +HY
Sbjct: 531 LGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHY 590

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
             M+DLLGRAG+++EA   I  MP  P    + A  GACK+H+N ++   AAKK+  L+P
Sbjct: 591 GAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNP 650

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
            + G ++LL+NIYA++ KW +VAEVRKTM  +G+ K PGCS +E+  ++H+F    ++HP
Sbjct: 651 DEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHP 710

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
           Q  +I   L+ L+ ++   GY PDTN +L D+E + +E  +  HSEKLAI FGL++ + G
Sbjct: 711 QSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVEDDVQEQLLNSHSEKLAIAFGLLNTSPG 769

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            TI +RKNLR+CGDCH   K  + +  + I++RD  R+HHF++G CSCGDYW
Sbjct: 770 TTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 207/411 (50%), Gaps = 9/411 (2%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           +     L  A+  +  M+   V+     +  L+K C     ++  K +H  +++  F   
Sbjct: 122 YAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAAN 181

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F +  ++NM+ K   +++A  +FD+MPER++VSW T+I+ +       KALEL++ M  
Sbjct: 182 VFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQD 241

Query: 169 EGVRPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           EG RP+  T   VL A      L++ + +H   I+ GF   V + +AL D+Y+K G +  
Sbjct: 242 EGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVET 301

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F+ M  + +V WNS++ G+ QN + ++A+ ++++M   G      T+   L AC  
Sbjct: 302 ARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACAD 361

Query: 286 LALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L  LE G  VH  V  L    D+ + N+L+ MY KC  ++ A  +F+ +  +  +SW+ M
Sbjct: 362 LGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAM 421

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFY 402
           I G AQNG   EAL  F  MK   +KP+  T+V V+ A +         W H   ++   
Sbjct: 422 ILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC- 480

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            +D      + ++D+  + G +  A KL  +M  +   +TW A++     H
Sbjct: 481 -LDKNIFVTTALVDMYSKCGAIHMARKLF-DMISDRHVITWNAMIDGYGTH 529



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/388 (30%), Positives = 194/388 (50%), Gaps = 38/388 (9%)

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           V+  G   E      L+++  K+  + EA  +F+ + ++    + TM+  Y      + A
Sbjct: 72  VIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETA 131

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDI 216
           L  L  M  + V+P ++ ++ +L+ C     L+   ++H  +I   F ++VF  + ++++
Sbjct: 132 LAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNM 191

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           YAK  ++ +A  +F+ MP RDLV WN+II GF+QN    +AL L  RM+  G   D  TL
Sbjct: 192 YAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITL 251

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQ 334
            +VL A   + LL +G  +H + ++     ++N   AL DMY KCGS+E A  +F  M Q
Sbjct: 252 VTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQ 311

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG--- 391
           K V+SW++M+ G  QNG  ++A+ +FE M    I P  +TI+  L AC+  G +E G   
Sbjct: 312 KTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFV 371

Query: 392 ---------------WNHFKSM-KKFYGID---------PGREHYSCMIDLLGRA--GKL 424
                           N   SM  K   +D          GR H S    +LG A  G++
Sbjct: 372 HKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRV 431

Query: 425 QEAVKLIHEMP---YEPDAVTWRALLGA 449
            EA+    EM     +PD+ T  +++ A
Sbjct: 432 SEALNCFSEMKSLGMKPDSFTMVSVIPA 459


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/592 (40%), Positives = 360/592 (60%), Gaps = 5/592 (0%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           RA++ +  M+  G+  +  T + ++K C    A +  + +H  ++    + + ++   L+
Sbjct: 286 RAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLV 345

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   L++A+ +FD M  R+++    +IS       +D+AL L   + +EG+  N  
Sbjct: 346 DMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRT 405

Query: 177 TYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T +AVL++  SL      RQ+H   +K+GF  D  V + LID Y K   L +A  VF E 
Sbjct: 406 TLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEEC 465

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
            + D++   S+I   +Q    + A+ L+  M R G   D   L+S+L AC  L+  E G 
Sbjct: 466 SSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGK 525

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           QVH H++K  +  D    NAL+  Y KCGS+EDA   FS + ++ V+SWS MI GLAQ+G
Sbjct: 526 QVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHG 585

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           + + AL+LF  M    I PN+IT+  VL AC+HAG V++   +F SMK+ +GID   EHY
Sbjct: 586 HGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHY 645

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           SCMIDLLGRAGKL +A++L++ MP++ +A  W ALLGA +VH++ +L   AA+K+  L+P
Sbjct: 646 SCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEP 705

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
           +  GT++LL+N YA++  W+EVA+VRK M+   I KEP  SWIEV  ++H F V D SHP
Sbjct: 706 EKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHP 765

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
              +I   L  L   +   G+ P+ +  L DL+  +KE  + +HSE+LA+ F L+S   G
Sbjct: 766 MTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPG 825

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             IR++KNLRIC DCH   K  +K+ ++ I+IRD  R+HHF+DG CSCGDYW
Sbjct: 826 APIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 135/439 (30%), Positives = 219/439 (49%), Gaps = 49/439 (11%)

Query: 55  LPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL---VHNHVLSGGFEPETF 110
           LPR A++A H M+  GV  +      ++KC      V +A+L   VH   ++ GF  + F
Sbjct: 83  LPRSAIQAFHGMRAEGVCCNEFALPVVLKC------VPDARLGAQVHAMAMATGFGSDVF 136

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQM-PERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
           + N L+ M+  F  +++A+ +F++   ERN VSW  ++SAY        A+++   M+  
Sbjct: 137 VANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 170 GVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           G++P  F +S V+ AC    ++   RQ+H  ++++G++ DVF  +AL+D+Y K+G +  A
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIA 256

Query: 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
             +F +MP  D+V WN++I G   N     A+ L  +MK +G   +  TL+S+L+AC+G 
Sbjct: 257 SVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGA 316

Query: 287 ALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
              +LG Q+H  ++K   D D  +   L+DMY K   L+DA  VF  M  +D+I  + +I
Sbjct: 317 GAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALI 376

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS-----------HA-----GFV 388
           SG +  G   EAL LF  ++   +  N  T+  VL + +           HA     GF+
Sbjct: 377 SGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFI 436

Query: 389 EDGWNHFKSMKKFYGI----DPGREHYSC----------MIDLLGRAGKLQEAVKLIHEM 434
            D       +  ++      D  R    C          MI  L +    + A+KL  EM
Sbjct: 437 FDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEM 496

Query: 435 ---PYEPDAVTWRALLGAC 450
                EPD     +LL AC
Sbjct: 497 LRKGLEPDPFVLSSLLNAC 515



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 187/371 (50%), Gaps = 7/371 (1%)

Query: 85  LARHAVEEAKLVHNHVLSGGFEPETF--LVNILLNMHVKFSLLEEAQVLFDQMPERNVVS 142
           L R+A  +A L   H+ +   +  +     N L++ + K      A+  FD++P+   VS
Sbjct: 11  LTRYAAAQALLPGAHLHASLLKSGSLASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVS 70

Query: 143 WTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVG 202
           W+++++AY +  +   A++    M  EGV  N F    VL+      +  Q+H   +  G
Sbjct: 71  WSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATG 130

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPT-RDLVVWNSIIGGFAQNSDVDEALNLY 261
           F SDVFV +AL+ +Y   G + +A  VFNE  + R+ V WN ++  + +N    +A+ ++
Sbjct: 131 FGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVF 190

Query: 262 KRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKC 319
             M  +G    +   + V+ ACTG   +E G QVH  V++  YD D+   NAL+DMY K 
Sbjct: 191 GEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKM 250

Query: 320 GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL 379
           G ++ A  +F +M   DV+SW+ +ISG   NG+   A++L   MK S + PN  T+  +L
Sbjct: 251 GRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSIL 310

Query: 380 FACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD 439
            ACS AG  + G      M K    D        ++D+  +   L +A K+   M +  D
Sbjct: 311 KACSGAGAFDLGRQIHGFMIK-ANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM-FHRD 368

Query: 440 AVTWRALLGAC 450
            +   AL+  C
Sbjct: 369 LILCNALISGC 379



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 10/186 (5%)

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLE 323
           M+ AG  + Q T     R     ALL  G  +H  +LK        N L+  Y KC    
Sbjct: 1   MRSAGTISQQLT-----RYAAAQALLP-GAHLHASLLKSGSLASFRNHLISFYSKCRRPC 54

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
            A   F  +     +SWS++++  + NG  + A++ F  M+   +  N   +  VL    
Sbjct: 55  CARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVP 114

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
            A        H  +M   +G D      + ++ + G  G + +A ++ +E   E +AV+W
Sbjct: 115 DARL--GAQVHAMAMATGFGSDVFVA--NALVAMYGGFGFMDDARRVFNEADSERNAVSW 170

Query: 444 RALLGA 449
             L+ A
Sbjct: 171 NGLMSA 176


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/662 (37%), Positives = 371/662 (56%), Gaps = 48/662 (7%)

Query: 19  RQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMH-AMQCHGVRADSVTY 77
           R F     P +   NT+ R  S L           D P+   +++  M   GV+ D  T+
Sbjct: 94  RLFDEIPEPNLFIWNTMIRGYSRL-----------DFPQLGVSLYLEMLRRGVKPDRYTF 142

Query: 78  AELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE 137
             L K      A+E  + +H HVL  G +   F+   L+ M++    L+ A+ +FD  P+
Sbjct: 143 PFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPK 202

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QL 194
            +V++W  +ISAY      +++  L + M  + V P   T   VL AC  L  LR   ++
Sbjct: 203 ADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKV 262

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
           H  +     ES++ + +A+ID+YA  GE+ +A  +F  M  RD++ W +I+ GF    ++
Sbjct: 263 HSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEI 322

Query: 255 D-------------------------------EALNLYKRMKRAGFAADQSTLTSVLRAC 283
           D                               EAL L++ M+      D+ T+ SVL AC
Sbjct: 323 DVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTAC 382

Query: 284 TGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
             L  LELG  +  ++   K  +DL + NAL+DMY KCG ++ A S+F  M Q+D  +W+
Sbjct: 383 AHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWT 442

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
            MI GLA NG+ ++AL +F +M  + I P+ IT +GVL AC+H G V+ G  +F  M   
Sbjct: 443 AMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQ 502

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
           +GI+P   HY C++DLL RAG+L+EA ++I  MP + +++ W ALL  C+V+R +D+A  
Sbjct: 503 HGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEM 562

Query: 462 AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIH 521
             K+IL L+P +   Y+LL NIYA  ++W+++ E+R+ M  +GI K PGCS IE+N ++H
Sbjct: 563 VVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVH 622

Query: 522 AFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAI 581
            F   D SHPQ   I+  L  + Q L   GY+PD + V  D+  E KE+S+  HSEKLAI
Sbjct: 623 EFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAI 682

Query: 582 VFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641
            FGL++   G TIRI KNLR+C DCH  AKL +K+ N+ +++RD  R+HHF+ G CSC D
Sbjct: 683 AFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKD 742

Query: 642 YW 643
           YW
Sbjct: 743 YW 744



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 207/420 (49%), Gaps = 45/420 (10%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQMPE 137
           L++ C    ++++ + VH   +  G      L N ++      ++   + A+ LFD++PE
Sbjct: 45  LLETC---ESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPE 101

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQL 194
            N+  W TMI  Y         + L + MLR GV+P+ +T+  + +     I L   RQL
Sbjct: 102 PNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQL 161

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
           H  ++K G + +VFV +AL+ +Y   G+L  A  VF+  P  D++ WN II  + +    
Sbjct: 162 HGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKF 221

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNAL 312
           +E+  L+  M+         TL  VL AC+ L  L  G +VH +V   K + +L+L NA+
Sbjct: 222 EESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAM 281

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ----------------------- 349
           +DMY  CG ++ A+ +F  M  +D+ISW+T++SG                          
Sbjct: 282 IDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWT 341

Query: 350 ---NGY-----SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKK 400
              +GY      +EAL+LF +M+ + +KP+  T+V VL AC+H G +E G W   ++   
Sbjct: 342 AMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEW--IRTYID 399

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
              I       + +ID+  + G + +A  +  EM  + D  TW A++    V+ + + A+
Sbjct: 400 RNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS-QRDKFTWTAMIVGLAVNGHGEKAL 458



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 170/335 (50%), Gaps = 13/335 (3%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDI--YAKLGELRNAECVFNEMPTRD 237
           ++L  C+S+  L+Q+HC  IK G  ++  +++ ++      + G+ + A  +F+E+P  +
Sbjct: 44  SLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPN 103

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           L +WN++I G+++       ++LY  M R G   D+ T   + +  T    LE G Q+H 
Sbjct: 104 LFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHG 163

Query: 298 HVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           HVLK+   +++ ++ AL+ MY  CG L+ A  VF    + DVI+W+ +IS   + G  +E
Sbjct: 164 HVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEE 223

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           + +LF  M+  ++ P  +T+V VL ACS    +  G     S  K   ++      + MI
Sbjct: 224 SRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTG-KKVHSYVKNCKVESNLVLENAMI 282

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA-ICAAKKILNLDPQ-D 473
           D+    G++  A+ +   M    D ++W  ++        T+L  I  A+   +  P+ D
Sbjct: 283 DMYADCGEMDSALGIFRSMNNR-DIISWTTIVSGF-----TNLGEIDVARNYFDKMPEKD 336

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
             ++  + + Y  S ++ E  E+ + M+A  +  +
Sbjct: 337 YVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPD 371



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYC--KCGSLED 324
           F+     L S+L  C  +  L+   QVH   +K   + + +L N ++   C  + G  + 
Sbjct: 35  FSPPTHPLISLLETCESMDQLQ---QVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQY 91

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           A  +F  + + ++  W+TMI G ++  + Q  + L+  M    +KP+  T     F    
Sbjct: 92  ARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYT-----FPFLF 146

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREH----YSCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
            GF  D    +      + +  G ++    ++ ++ +    G+L  A  +    P + D 
Sbjct: 147 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCP-KADV 205

Query: 441 VTWRALLGA 449
           +TW  ++ A
Sbjct: 206 ITWNMIISA 214


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/592 (40%), Positives = 356/592 (60%), Gaps = 5/592 (0%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           RA++ +  M+  G+  +    + ++K C    A +  + +H  ++    + + ++   L+
Sbjct: 286 RAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLV 345

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   L++A  +FD M  R+++ W  +IS       +D+A  +   + +EG+  N  
Sbjct: 346 DMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRT 405

Query: 177 TYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T +AVL++  SL      RQ+H    K+GF  D  V + LID Y K   L +A  VF E 
Sbjct: 406 TLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEEC 465

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
            + D++   S+I   +Q    + A+ L+  M R G   D   L+S+L AC  L+  E G 
Sbjct: 466 SSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGK 525

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           QVH H++K  +  D    NAL+  Y KCGS+EDA   FS + ++ V+SWS MI GLAQ+G
Sbjct: 526 QVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHG 585

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           + + AL+LF  M    I PN+IT+  VL AC+HAG V++   +F SMK+ +GID   EHY
Sbjct: 586 HGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHY 645

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           SCMIDLLGRAGKL +A++L++ MP++ +A  W ALLGA +VH++ +L   AA+K+  L+P
Sbjct: 646 SCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEP 705

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
           +  GT++LL+N YA+S  W+EVA+VRK M+   I KEP  SW+EV  ++H F V D SHP
Sbjct: 706 EKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHP 765

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
              +I   L  L   +   GY P+ +  L DL+  +KE  + +HSE+LA+ F L+S   G
Sbjct: 766 MTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPG 825

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             IR++KNLRIC DCH   K  + + ++ I+IRD  R+HHF+DG CSCGDYW
Sbjct: 826 APIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/439 (30%), Positives = 218/439 (49%), Gaps = 49/439 (11%)

Query: 55  LPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL---VHNHVLSGGFEPETF 110
           LPR A++A H M+  GV  +      ++KC      V +A+L   VH   ++ GF  + F
Sbjct: 83  LPRSAIQAFHGMRAEGVCCNEFALPVVLKC------VPDAQLGAQVHAMAMATGFGSDVF 136

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQM-PERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
           + N L+ M+  F  +++A+ +FD+   ERN VSW  ++SAY        A+++   M+  
Sbjct: 137 VANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 170 GVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           G++P  F +S V+ AC    ++   RQ+H  ++++G+E DVF  +AL+D+Y K+G +  A
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIA 256

Query: 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
             +F +MP  D+V WN++I G   N     A+ L  +MK +G   +   L+S+L+AC G 
Sbjct: 257 SVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGA 316

Query: 287 ALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
              +LG Q+H  ++K   D D  +   L+DMY K   L+DAM VF  M  +D+I W+ +I
Sbjct: 317 GAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALI 376

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS-----------HA-----GFV 388
           SG +  G   EA  +F  ++   +  N  T+  VL + +           HA     GF+
Sbjct: 377 SGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFI 436

Query: 389 EDGWNHFKSMKKFYGI----DPGREHYSC----------MIDLLGRAGKLQEAVKLIHEM 434
            D       +  ++      D  R    C          MI  L +    + A+KL  EM
Sbjct: 437 FDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEM 496

Query: 435 ---PYEPDAVTWRALLGAC 450
                EPD     +LL AC
Sbjct: 497 LRKGLEPDPFVLSSLLNAC 515



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 114/373 (30%), Positives = 192/373 (51%), Gaps = 11/373 (2%)

Query: 85  LARHAVEEAKL----VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
           L R+A  +A L    +H ++L  GF     L N L++ + K      A+ +FD++P+   
Sbjct: 11  LTRYAAAQALLPGAHLHANLLKSGFLAS--LRNHLISFYSKCRRPCCARRVFDEIPDPCH 68

Query: 141 VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIK 200
           VSW+++++AY +  +   A++    M  EGV  N F    VL+      +  Q+H   + 
Sbjct: 69  VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQLGAQVHAMAMA 128

Query: 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT-RDLVVWNSIIGGFAQNSDVDEALN 259
            GF SDVFV +AL+ +Y   G + +A  VF+E  + R+ V WN ++  + +N    +A+ 
Sbjct: 129 TGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQ 188

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYC 317
           ++  M  +G    +   + V+ ACTG   ++ G QVH  V++  Y+ D+   NAL+DMY 
Sbjct: 189 VFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYV 248

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           K G ++ A  +F +M   DV+SW+ +ISG   NG+   A++L   MK S + PN   +  
Sbjct: 249 KMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSS 308

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           +L AC+ AG  + G      M K    D        ++D+  +   L +A+K+   M + 
Sbjct: 309 ILKACAGAGAFDLGRQIHGFMIK-ANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHR 367

Query: 438 PDAVTWRALLGAC 450
            D + W AL+  C
Sbjct: 368 -DLILWNALISGC 379



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 10/186 (5%)

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLE 323
           M+ AG  + Q T     R     ALL  G  +H ++LK      L N L+  Y KC    
Sbjct: 1   MRSAGTISQQLT-----RYAAAQALLP-GAHLHANLLKSGFLASLRNHLISFYSKCRRPC 54

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
            A  VF  +     +SWS++++  + NG  + A++ F  M+   +  N   +  VL    
Sbjct: 55  CARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVP 114

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
            A        H  +M   +G D      + ++ + G  G + +A ++  E   E +AV+W
Sbjct: 115 DAQL--GAQVHAMAMATGFGSDVFVA--NALVAMYGGFGFMDDARRVFDEAGSERNAVSW 170

Query: 444 RALLGA 449
             L+ A
Sbjct: 171 NGLMSA 176


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/563 (41%), Positives = 355/563 (63%), Gaps = 36/563 (6%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N L+  +VK ++L +A+ LFD+MP R+V+SW TMIS Y  A++ D +    +F   E   
Sbjct: 205 NCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGY--AQVGDLSQAKRLF--NESPI 260

Query: 173 PNMFTYSAVL-------------RACDSLIILRQLHCGIIKVG-------------FES- 205
            ++FT++A++             +  D + +  ++    +  G             FE+ 
Sbjct: 261 RDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAM 320

Query: 206 ---DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
              ++   + +I  Y + G +  A  +F+ MP RD V W +II G+AQN   +EALN++ 
Sbjct: 321 PCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFV 380

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCG 320
            MKR G ++++ST +  L  C  +A LELG QVH  V+K  ++    + NALL MY KCG
Sbjct: 381 EMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCG 440

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
           S ++A  VF  + +KDV+SW+TMI+G A++G+ ++AL LFESMK + +KP+ IT+VGVL 
Sbjct: 441 STDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLS 500

Query: 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
           ACSH+G ++ G  +F SM + Y + P  +HY+CMIDLLGRAG+L+EA  L+  MP++P A
Sbjct: 501 ACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGA 560

Query: 441 VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTM 500
            +W ALLGA ++H NT+L   AA+ +  ++PQ+ G Y+LLSN+YA S +W +V ++R  M
Sbjct: 561 ASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKM 620

Query: 501 RARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVL 560
           R  G+ K  G SW+EV  +IH F+V D  HP+ D+I   L+ L  K+   GY   T  VL
Sbjct: 621 REAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVL 680

Query: 561 QDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQT 620
            D+E E+KE  ++YHSEKLA+ FG++++  G+ IR+ KNLR+C DCH   K  +K+  + 
Sbjct: 681 HDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRL 740

Query: 621 IVIRDPIRYHHFQDGNCSCGDYW 643
           I++RD  R+HHF +G CSCGDYW
Sbjct: 741 IILRDSHRFHHFSEGICSCGDYW 763



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 180/410 (43%), Gaps = 40/410 (9%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R  SV+Y  +I   L       A+ + + +     E + F  N++L  +V+   L EA  
Sbjct: 74  RRSSVSYNAMISGYLRNAKFSLARDLFDKMP----ERDLFSWNVMLTGYVRNRRLGEAHK 129

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML-REGVRPN----MFTYSAVLRAC 185
           LFD MP+++VVSW  M+S Y      D+A E+   M  R  +  N     + ++  L+  
Sbjct: 130 LFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEA 189

Query: 186 D---------SLIILRQLHCGIIK---VGFESDVFVRSALIDI---------YAKLGELR 224
                      LI    L  G +K   +G    +F R  + D+         YA++G+L 
Sbjct: 190 RRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLS 249

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
            A+ +FNE P RD+  W +++ G+ QN  VDEA   +  M      +  + L   ++   
Sbjct: 250 QAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKK 309

Query: 285 GLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
            +   EL   +         ++   N ++  Y + G +  A  +F  M Q+D +SW+ +I
Sbjct: 310 MVIAGELFEAMPC------RNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAII 363

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYG 403
           SG AQNG+ +EAL +F  MK      N  T    L  C+    +E G   H + +K   G
Sbjct: 364 SGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKA--G 421

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            + G    + ++ +  + G   EA  +   +  E D V+W  ++     H
Sbjct: 422 FETGCFVGNALLGMYFKCGSTDEANDVFEGIE-EKDVVSWNTMIAGYARH 470



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 148/370 (40%), Gaps = 73/370 (19%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           +P+    N  ++ H++    + A  +F+ MP R+ VS+  MIS Y        A +L   
Sbjct: 43  DPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDK 102

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           M                                     E D+F  + ++  Y +   L  
Sbjct: 103 MP------------------------------------ERDLFSWNVMLTGYVRNRRLGE 126

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F+ MP +D+V WN+++ G+AQN  VDEA  ++ +M      +    L + +     
Sbjct: 127 AHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNG-- 184

Query: 286 LALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
                L     +   + + +LI  N L+  Y K   L DA  +F RM  +DVISW+TMIS
Sbjct: 185 ----RLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMIS 240

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK------ 399
           G AQ G   +A +LF    +  +     T   ++      G V++   +F  M       
Sbjct: 241 GYAQVGDLSQAKRLFNESPIRDV----FTWTAMVSGYVQNGMVDEARKYFDEMPVKNEIS 296

Query: 400 ------------------KFYGIDPGR--EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD 439
                             + +   P R    ++ MI   G+ G + +A KL   MP + D
Sbjct: 297 YNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMP-QRD 355

Query: 440 AVTWRALLGA 449
            V+W A++  
Sbjct: 356 CVSWAAIISG 365



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 91/195 (46%), Gaps = 21/195 (10%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  G  ++  T++  +  C    A+E  K VH  V+  GFE   F+ N LL M+ K   
Sbjct: 382 MKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGS 441

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            +EA  +F+ + E++VVSW TMI+ Y       +AL L   M + GV+P+  T   VL A
Sbjct: 442 TDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSA 501

Query: 185 CDSLIILRQLHCGIIKVGFE------SDVFVR------SALIDIYAKLGELRNAECVFNE 232
           C         H G+I  G E       D  V+      + +ID+  + G L  AE +   
Sbjct: 502 CS--------HSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRN 553

Query: 233 MP-TRDLVVWNSIIG 246
           MP       W +++G
Sbjct: 554 MPFDPGAASWGALLG 568



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 120/259 (46%), Gaps = 23/259 (8%)

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           D+V WN  I    +N   D AL ++  M R    +  + ++  LR        +L  ++ 
Sbjct: 45  DIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMP 104

Query: 297 VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
                 + DL   N +L  Y +   L +A  +F  M +KDV+SW+ M+SG AQNG+  EA
Sbjct: 105 ------ERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEA 158

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
            ++F  M       N I+  G+L A  H G +++    F+S   +  I      ++C++ 
Sbjct: 159 REVFNKMP----HRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELIS-----WNCLMG 209

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALL-GACKVHRNTDLAICAAKKILNLDP-QDP 474
              +   L +A +L   MP   D ++W  ++ G  +V    DL+   AK++ N  P +D 
Sbjct: 210 GYVKRNMLGDARQLFDRMPVR-DVISWNTMISGYAQV---GDLS--QAKRLFNESPIRDV 263

Query: 475 GTYILLSNIYANSQKWDEV 493
            T+  + + Y  +   DE 
Sbjct: 264 FTWTAMVSGYVQNGMVDEA 282


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/595 (37%), Positives = 362/595 (60%), Gaps = 6/595 (1%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
              A++    M+  G       ++  I+ C +  ++E  K +H   L  G   E F+ + 
Sbjct: 87  FSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSN 146

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           L +M+ K   + +A  +F++MP ++ VSWT MI  Y      ++AL     M+ E V  +
Sbjct: 147 LEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTID 206

Query: 175 MFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
                + L AC +L      R +H  ++K+GFESD+FV +AL D+Y+K G++ +A  VF 
Sbjct: 207 QHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFG 266

Query: 232 -EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
            +   R++V +  +I G+ +   +++ L+++  ++R G   ++ T +S+++AC   A LE
Sbjct: 267 IDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALE 326

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            GTQ+H  V+K  +D D  +++ L+DMY KCG LE A+  F  +     I+W++++S   
Sbjct: 327 QGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFG 386

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           Q+G  ++A+K FE M    +KPN IT + +L  CSHAG VE+G ++F SM K YG+ PG 
Sbjct: 387 QHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGE 446

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           EHYSC+IDLLGRAG+L+EA + I+ MP+EP+A  W + LGAC++H + ++   AA+K++ 
Sbjct: 447 EHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVK 506

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           L+P++ G  +LLSNIYAN ++W++V  VR  MR   + K PG SW++V  + H F   D 
Sbjct: 507 LEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDW 566

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
           SH +   I + L  L+ ++   GY P T+ V  D++   KE  +  HSE++A+ F L+S+
Sbjct: 567 SHXRKSAIYEKLDXLLDQIKAAGYVPXTDSVPLDMDDXMKEKLLHRHSERIAVAFALISM 626

Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             GK I ++KNLR+C DCH+  K  +K+  + I++RD  R+HHF DG+CSCGDYW
Sbjct: 627 PIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 207/388 (53%), Gaps = 10/388 (2%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D+   A +I+       +   K +H  ++  G+ P TFL N L+NM+ K   L+ A  LF
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL- 191
           D MP+RN+VSWT MIS         +A+     M   G  P  F +S+ +RAC SL  + 
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 192 --RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
             +Q+HC  +K G  S++FV S L D+Y+K G + +A  VF EMP +D V W ++I G++
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           +  + +EAL  +K+M       DQ  L S L AC  L   + G  VH  V+K  ++ D+ 
Sbjct: 184 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIF 243

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQ-KDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
           + NAL DMY K G +E A +VF    + ++V+S++ +I G  +    ++ L +F  ++  
Sbjct: 244 VGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQ 303

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
            I+PN  T   ++ AC++   +E G   H + MK  +  DP     S ++D+ G+ G L+
Sbjct: 304 GIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLLE 361

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVH 453
            A++   E+  +P  + W +L+     H
Sbjct: 362 HAIQAFDEIG-DPTEIAWNSLVSVFGQH 388



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 168/351 (47%), Gaps = 50/351 (14%)

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           +QLH  +I  G+    F+ + L+++Y+K GEL +A  +F+ MP R+LV W ++I G +QN
Sbjct: 25  KQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQN 84

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILN 309
           S   EA+  +  M+  G    Q   +S +RAC  L  +E+G Q+H   LK+    +L + 
Sbjct: 85  SKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVG 144

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
           + L DMY KCG++ DA  VF  M  KD +SW+ MI G ++ G  +EAL  F+ M    + 
Sbjct: 145 SNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVT 204

Query: 370 PNYITIVGVLFACS-----------HAGFVEDGW-----------------NHFKSMKKF 401
            +   +   L AC            H+  V+ G+                    +S    
Sbjct: 205 IDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNV 264

Query: 402 YGIDPGREH---YSCMIDLLGRAGKLQEAVKLIHEM---PYEPDAVTWRALLGAC----K 451
           +GID    +   Y+C+ID      ++++ + +  E+     EP+  T+ +L+ AC     
Sbjct: 265 FGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAA 324

Query: 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS-------QKWDEVAE 495
           + + T L     K  +N D +DP    +L ++Y          Q +DE+ +
Sbjct: 325 LEQGTQLHAQVMK--INFD-EDPFVSSILVDMYGKCGLLEHAIQAFDEIGD 372



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 183/369 (49%), Gaps = 18/369 (4%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++D +++     +   A+ A   M    V  D       +  C A  A +  + VH+ 
Sbjct: 176 TAMIDGYSKI---GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSS 232

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE-RNVVSWTTMISAYCDAKMNDK 158
           V+  GFE + F+ N L +M+ K   +E A  +F    E RNVVS+T +I  Y + +  +K
Sbjct: 233 VVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEK 292

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALID 215
            L + + + R+G+ PN FT+S++++AC +   L    QLH  ++K+ F+ D FV S L+D
Sbjct: 293 GLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVD 352

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           +Y K G L +A   F+E+     + WNS++  F Q+    +A+  ++RM   G   +  T
Sbjct: 353 MYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAIT 412

Query: 276 LTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSR 331
             S+L  C+   L+E G   + + +   + ++      + ++D+  + G L++A    +R
Sbjct: 413 FISLLTGCSHAGLVEEGLD-YFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINR 471

Query: 332 M-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
           M  + +   W + +     +G  +E  KL  + K+ +++P      G L   S+    E 
Sbjct: 472 MPFEPNAFGWCSFLGACRIHG-DKEMGKL-AAEKLVKLEPKN---SGALVLLSNIYANER 526

Query: 391 GWNHFKSMK 399
            W   +S++
Sbjct: 527 QWEDVRSVR 535


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/662 (37%), Positives = 371/662 (56%), Gaps = 48/662 (7%)

Query: 19  RQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMH-AMQCHGVRADSVTY 77
           R F     P +   NT+ R  S L           D P+   +++  M   GV+ D  T+
Sbjct: 73  RLFDEIPEPNLFIWNTMIRGYSRL-----------DFPQLGVSLYLEMLRRGVKPDRYTF 121

Query: 78  AELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE 137
             L K      A+E  + +H HVL  G +   F+   L+ M++    L+ A+ +FD  P+
Sbjct: 122 PFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPK 181

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QL 194
            +V++W  +ISAY      +++  L + M  + V P   T   VL AC  L  LR   ++
Sbjct: 182 ADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKV 241

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
           H  +     ES++ + +A+ID+YA  GE+ +A  +F  M  RD++ W +I+ GF    ++
Sbjct: 242 HSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEI 301

Query: 255 D-------------------------------EALNLYKRMKRAGFAADQSTLTSVLRAC 283
           D                               EAL L++ M+      D+ T+ SVL AC
Sbjct: 302 DVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTAC 361

Query: 284 TGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
             L  LELG  +  ++   K  +DL + NAL+DMY KCG ++ A S+F  M Q+D  +W+
Sbjct: 362 AHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWT 421

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
            MI GLA NG+ ++AL +F +M  + I P+ IT +GVL AC+H G V+ G  +F  M   
Sbjct: 422 AMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQ 481

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
           +GI+P   HY C++DLL RAG+L+EA ++I  MP + +++ W ALL  C+V+R +D+A  
Sbjct: 482 HGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEM 541

Query: 462 AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIH 521
             K+IL L+P +   Y+LL NIYA  ++W+++ E+R+ M  +GI K PGCS IE+N ++H
Sbjct: 542 VVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVH 601

Query: 522 AFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAI 581
            F   D SHPQ   I+  L  + Q L   GY+PD + V  D+  E KE+S+  HSEKLAI
Sbjct: 602 EFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAI 661

Query: 582 VFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641
            FGL++   G TIRI KNLR+C DCH  AKL +K+ N+ +++RD  R+HHF+ G CSC D
Sbjct: 662 AFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKD 721

Query: 642 YW 643
           YW
Sbjct: 722 YW 723



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 207/420 (49%), Gaps = 45/420 (10%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQMPE 137
           L++ C    ++++ + VH   +  G      L N ++      ++   + A+ LFD++PE
Sbjct: 24  LLETC---ESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPE 80

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQL 194
            N+  W TMI  Y         + L + MLR GV+P+ +T+  + +     I L   RQL
Sbjct: 81  PNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQL 140

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
           H  ++K G + +VFV +AL+ +Y   G+L  A  VF+  P  D++ WN II  + +    
Sbjct: 141 HGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKF 200

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNAL 312
           +E+  L+  M+         TL  VL AC+ L  L  G +VH +V   K + +L+L NA+
Sbjct: 201 EESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAM 260

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ----------------------- 349
           +DMY  CG ++ A+ +F  M  +D+ISW+T++SG                          
Sbjct: 261 IDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWT 320

Query: 350 ---NGY-----SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKK 400
              +GY      +EAL+LF +M+ + +KP+  T+V VL AC+H G +E G W   ++   
Sbjct: 321 AMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEW--IRTYID 378

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
              I       + +ID+  + G + +A  +  EM  + D  TW A++    V+ + + A+
Sbjct: 379 RNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS-QRDKFTWTAMIVGLAVNGHGEKAL 437



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 167/333 (50%), Gaps = 9/333 (2%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDI--YAKLGELRNAECVFNEMPTRD 237
           ++L  C+S+  L+Q+HC  IK G  ++  +++ ++      + G+ + A  +F+E+P  +
Sbjct: 23  SLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPN 82

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           L +WN++I G+++       ++LY  M R G   D+ T   + +  T    LE G Q+H 
Sbjct: 83  LFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHG 142

Query: 298 HVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           HVLK+   +++ ++ AL+ MY  CG L+ A  VF    + DVI+W+ +IS   + G  +E
Sbjct: 143 HVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEE 202

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           + +LF  M+  ++ P  +T+V VL ACS    +  G     S  K   ++      + MI
Sbjct: 203 SRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTG-KKVHSYVKNCKVESNLVLENAMI 261

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           D+    G++  A+ +   M    D ++W  ++         D+A     K   +  +D  
Sbjct: 262 DMYADCGEMDSALGIFRSMN-NRDIISWTTIVSGFTNLGEIDVARNYFDK---MPEKDYV 317

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
           ++  + + Y  S ++ E  E+ + M+A  +  +
Sbjct: 318 SWTAMIDGYIRSNRFKEALELFRNMQATNVKPD 350



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYC--KCGSLED 324
           F+     L S+L  C  +  L+   QVH   +K   + + +L N ++   C  + G  + 
Sbjct: 14  FSPPTHPLISLLETCESMDQLQ---QVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQY 70

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           A  +F  + + ++  W+TMI G ++  + Q  + L+  M    +KP+  T     F    
Sbjct: 71  ARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYT-----FPFLF 125

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREH----YSCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
            GF  D    +      + +  G ++    ++ ++ +    G+L  A  +    P + D 
Sbjct: 126 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCP-KADV 184

Query: 441 VTWRALLGA 449
           +TW  ++ A
Sbjct: 185 ITWNMIISA 193


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/508 (43%), Positives = 327/508 (64%), Gaps = 5/508 (0%)

Query: 141 VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCG 197
           VSW ++I         + AL     M    ++ + +T  +VL +  S+ +++    +HC 
Sbjct: 7   VSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCL 66

Query: 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEA 257
           IIK GFE+   V +ALID+YAK G+L  A  VF++M  +D+V W S++ G++ N   +EA
Sbjct: 67  IIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEA 126

Query: 258 LNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDM 315
           + L+ +M+ +G   DQ  + SVL AC  L +++ G Q+H  ++K   +  L ++N+L+ M
Sbjct: 127 IKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTM 186

Query: 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITI 375
           Y KCGS+ DA   F  M  +DVISW+ +I G AQNG  + +L+ ++ M  +  KP+YIT 
Sbjct: 187 YAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITF 246

Query: 376 VGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435
           +G+LFACSH G +  G  +F++M K YGI PG EHY+CMIDLLGR+GKL EA  L+++M 
Sbjct: 247 IGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMV 306

Query: 436 YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAE 495
             PDAV W+ALL AC+VH+  +L   AAK +  L+P +   Y++LSN+Y+ + KW++ A 
Sbjct: 307 VAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAAR 366

Query: 496 VRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPD 555
           +R+ MR+RGI KEPG SWIE N ++  F   D +HP  ++I   +  +I  +   GY PD
Sbjct: 367 IRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYVPD 426

Query: 556 TNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAK 615
            ++ L D + E KE  + YHSEKLA+ FGL+++ QG  IRI KNLR+CGDCHT  K T+K
Sbjct: 427 MSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKYTSK 486

Query: 616 MENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +  + I++RD   +HHF +G CSCGDYW
Sbjct: 487 VYARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 161/318 (50%), Gaps = 18/318 (5%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           +SL+    R  ++ D   A+     M+   ++ D  T   ++    +   ++ A  VH  
Sbjct: 10  NSLILGCVREGFEED---ALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCL 66

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           ++  GFE    + N L++M+ K   L+ A ++F +M +++VVSWT++++ Y      ++A
Sbjct: 67  IIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEA 126

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDI 216
           ++L   M   GV P+    ++VL AC  L ++   +Q+H  ++K G ES + V ++L+ +
Sbjct: 127 IKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTM 186

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           YAK G + +A   F+ MPTRD++ W ++I G+AQN     +L  Y +M   G   D  T 
Sbjct: 187 YAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITF 246

Query: 277 TSVLRAC-------TGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVF 329
             +L AC       +G A  E   +V+      +H       ++D+  + G L +A  + 
Sbjct: 247 IGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEH----YACMIDLLGRSGKLAEAKGLL 302

Query: 330 SRM-IQKDVISWSTMISG 346
           ++M +  D + W  +++ 
Sbjct: 303 NQMVVAPDAVVWKALLAA 320



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 125/217 (57%), Gaps = 4/217 (1%)

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           M   D V WNS+I G  +    ++AL+ +++M+      D+ TL SVL +   + +++  
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNA 60

Query: 293 TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
             VH  ++K  ++   ++NNAL+DMY K G L+ A+ VFS+M+ KDV+SW+++++G + N
Sbjct: 61  ISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHN 120

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
           G  +EA+KLF  M++S + P+ I +  VL AC+    ++ G     ++ K  G++     
Sbjct: 121 GSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVK-SGLESSLSV 179

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
            + ++ +  + G + +A +    MP   D ++W AL+
Sbjct: 180 DNSLVTMYAKCGSIVDANRAFDNMPTR-DVISWTALI 215


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 269/710 (37%), Positives = 387/710 (54%), Gaps = 88/710 (12%)

Query: 15  SSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADS 74
           S+ AR+  +    P+   +T+  N+       T + +  D   A++    +  +G R D+
Sbjct: 97  SNLARE--IFFATPLGIRDTVCYNAM-----ITGYSHNNDGFGAIELFRDLLRNGFRPDN 149

Query: 75  VTYAELIKC-CLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL--------- 124
            T+  ++    L     ++ + +H  V+  G    T ++N LL++ VK +          
Sbjct: 150 FTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSL 209

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYC-----DAK------MNDK--------------- 158
           +  A+ LFD+M ER+ +SWTTMI+ Y      DA       M +K               
Sbjct: 210 MAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHH 269

Query: 159 -----ALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKV----GFESD 206
                ALE+   M   G++ + FTY++VL AC +       +Q+H  I++       +  
Sbjct: 270 GFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFS 329

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF------------------ 248
           + V +AL  +Y K G++  A  VFN+MP +DLV WN+I+ G+                  
Sbjct: 330 LSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPE 389

Query: 249 -------------AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
                        AQN   +E+L L+ RMK  GF          + AC  LA L  G Q+
Sbjct: 390 RNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQL 449

Query: 296 HVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H  +++  +D  L   NAL+ MY KCG +E A  +F  M   D +SW+ MI+ L Q+G+ 
Sbjct: 450 HAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHG 509

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
            +AL+LFE M    I P+ IT + VL  CSHAG VE+G  +FKSM   YGI PG +HY+ 
Sbjct: 510 AQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYAR 569

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           MIDLL RAGK  EA  +I  MP EP    W ALL  C++H N DL I AA+++  L PQ 
Sbjct: 570 MIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQH 629

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQI 533
            GTY+LLSN+YA   +WD+VA+VRK MR +G+ KEPGCSWIEV  ++H F V D  HP++
Sbjct: 630 DGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEV 689

Query: 534 DKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT 593
             +  +L+ L  K+  +GY PDT +VL D+E EQKE  +  HSEKLA+ FGL+ L  G T
Sbjct: 690 QAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKLPLGAT 749

Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +R+ KNLRICGDCH   K  +K+  + IV+RD  R+HHF++G CSCG+YW
Sbjct: 750 VRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 133/492 (27%), Positives = 222/492 (45%), Gaps = 119/492 (24%)

Query: 78  AELIKCCLAR-HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           A+L +CC     +   A+ VH H+++ GF+P  +++N L++++ K S L  A  LFD++ 
Sbjct: 18  AQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIR 77

Query: 137 ERNVVSWTTMISAYCDAKMND---------------------------------KALELL 163
           + ++V+ TT+I+A+  A  ++                                  A+EL 
Sbjct: 78  QPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELF 137

Query: 164 IFMLREGVRPNMFTYSAVLRACDSLII-----LRQLHCGIIKVGFESDVFVRSALIDIYA 218
             +LR G RP+ FT+++VL A  +LI+      +Q+HC ++K G      V +AL+ ++ 
Sbjct: 138 RDLLRNGFRPDNFTFTSVLGAL-ALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFV 196

Query: 219 KLG---------ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD-------------- 255
           K            +  A  +F+EM  RD + W ++I G+ +N ++D              
Sbjct: 197 KCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLV 256

Query: 256 -----------------EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
                            EAL ++++M   G   D+ T TSVL AC        G QVH +
Sbjct: 257 VAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAY 316

Query: 299 VLK------YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS------------- 339
           +L+       D  L +NNAL  +Y KCG +++A  VF++M  KD++S             
Sbjct: 317 ILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGR 376

Query: 340 ------------------WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
                             W+ MISGLAQNG+ +E+LKLF  MK    +P      G + A
Sbjct: 377 IDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIA 436

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
           C+    +  G      + +  G D      + +I +  + G ++ A  L   MPY  D+V
Sbjct: 437 CAWLAALMHGRQLHAQLVRL-GFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPY-LDSV 494

Query: 442 TWRALLGACKVH 453
           +W A++ A   H
Sbjct: 495 SWNAMIAALGQH 506



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 187/447 (41%), Gaps = 113/447 (25%)

Query: 178 YSAVLRAC-----DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           Y+A L+ C      S  I R +H  +I  GF+   ++ + LID+Y K  +L +A  +F+E
Sbjct: 16  YAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDE 75

Query: 233 ---------------------------------MPTRDLVVWNSIIGGFAQNSDVDEALN 259
                                            +  RD V +N++I G++ N+D   A+ 
Sbjct: 76  IRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIE 135

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALL----ELGTQVHVHVLKYDHDLILN--NALL 313
           L++ + R GF  D  T TSVL A   LAL+    +   Q+H  V+K     + +  NALL
Sbjct: 136 LFRDLLRNGFRPDNFTFTSVLGA---LALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALL 192

Query: 314 DMYCKC----------------------------------------GSLEDAMSVFSRMI 333
            ++ KC                                        G L+ A      M 
Sbjct: 193 SVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMT 252

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393
           +K V++W+ MISG   +G+  EAL++F  M +  I+ +  T   VL AC++AGF   G  
Sbjct: 253 EKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQ 312

Query: 394 ---HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL-GA 449
              +    +    +D      + +  L  + GK+ EA ++ ++MP + D V+W A+L G 
Sbjct: 313 VHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVK-DLVSWNAILSGY 371

Query: 450 CKVHRNTDLAICAAKKILNLDPQ-DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
               R     I  AK      P+ +  T+ ++ +  A +   +E  ++   M++ G   E
Sbjct: 372 VNAGR-----IDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGF--E 424

Query: 509 P----------GCSWIEV---NKQIHA 522
           P           C+W+      +Q+HA
Sbjct: 425 PCDYAFAGAIIACAWLAALMHGRQLHA 451


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/592 (40%), Positives = 356/592 (60%), Gaps = 5/592 (0%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           RA++ +  M+  G+  +    + ++K C    A +  + +H  ++    + + ++   L+
Sbjct: 193 RAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLV 252

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   L++A  +FD M  R+++ W  +IS       +D+A  +   + +EG+  N  
Sbjct: 253 DMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRT 312

Query: 177 TYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T +AVL++  SL      RQ+H    K+GF  D  V + LID Y K   L +A  VF E 
Sbjct: 313 TLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEEC 372

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
            + D++   S+I   +Q    + A+ L+  M R G   D   L+S+L AC  L+  E G 
Sbjct: 373 SSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGK 432

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           QVH H++K  +  D    NAL+  Y KCGS+EDA   FS + ++ V+SWS MI GLAQ+G
Sbjct: 433 QVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHG 492

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           + + AL+LF  M    I PN+IT+  VL AC+HAG V++   +F SMK+ +GID   EHY
Sbjct: 493 HGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHY 552

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           SCMIDLLGRAGKL +A++L++ MP++ +A  W ALLGA +VH++ +L   AA+K+  L+P
Sbjct: 553 SCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEP 612

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
           +  GT++LL+N YA+S  W+EVA+VRK M+   I KEP  SW+EV  ++H F V D SHP
Sbjct: 613 EKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHP 672

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
              +I   L  L   +   GY P+ +  L DL+  +KE  + +HSE+LA+ F L+S   G
Sbjct: 673 MTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPG 732

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             IR++KNLRIC DCH   K  + + ++ I+IRD  R+HHF+DG CSCGDYW
Sbjct: 733 APIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 784



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/409 (28%), Positives = 215/409 (52%), Gaps = 9/409 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M   G++     ++ ++  C     ++  + VH  V+  G+E + F  N L++
Sbjct: 93  AIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVD 152

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+VK   ++ A V+F++MP+ +VVSW  +IS       + +A+ELL+ M   G+ PN+F 
Sbjct: 153 MYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFM 212

Query: 178 YSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            S++L+AC    +  + RQ+H  +IK   +SD ++   L+D+YAK   L +A  VF+ M 
Sbjct: 213 LSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMS 272

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RDL++WN++I G +     DEA +++  +++ G   +++TL +VL++   L       Q
Sbjct: 273 HRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQ 332

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           VH    K  +  D  + N L+D Y KC  L DA+ VF      D+I+ ++MI+ L+Q  +
Sbjct: 333 VHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDH 392

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHY 411
            + A+KLF  M    ++P+   +  +L AC+     E G   H   +K+ +  D      
Sbjct: 393 GEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG-- 450

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           + ++    + G +++A      +P E   V+W A++G    H +   A+
Sbjct: 451 NALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRAL 498



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/428 (30%), Positives = 210/428 (49%), Gaps = 48/428 (11%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKL---VHNHVLSGGFEPETFLVNILLNMHVK 121
           M+  GV  +      ++KC      V +A+L   VH   ++ GF  + F+ N L+ M+  
Sbjct: 1   MRAEGVCCNEFALPVVLKC------VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGG 54

Query: 122 FSLLEEAQVLFDQM-PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSA 180
           F  +++A+ +FD+   ERN VSW  ++SAY        A+++   M+  G++P  F +S 
Sbjct: 55  FGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSC 114

Query: 181 VLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           V+ AC    ++   RQ+H  ++++G+E DVF  +AL+D+Y K+G +  A  +F +MP  D
Sbjct: 115 VVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSD 174

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           +V WN++I G   N     A+ L  +MK +G   +   L+S+L+AC G    +LG Q+H 
Sbjct: 175 VVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHG 234

Query: 298 HVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
            ++K   D D  +   L+DMY K   L+DAM VF  M  +D+I W+ +ISG +  G   E
Sbjct: 235 FMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDE 294

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACS-----------HA-----GFVEDGWNHFKSMK 399
           A  +F  ++   +  N  T+  VL + +           HA     GF+ D       + 
Sbjct: 295 AFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLID 354

Query: 400 KFYGI----DPGREHYSC----------MIDLLGRAGKLQEAVKLIHEM---PYEPDAVT 442
            ++      D  R    C          MI  L +    + A+KL  EM     EPD   
Sbjct: 355 SYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFV 414

Query: 443 WRALLGAC 450
             +LL AC
Sbjct: 415 LSSLLNAC 422



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 99/200 (49%), Gaps = 8/200 (4%)

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGS 321
           M+  G   ++  L  VL+ C   A  +LG QVH   +   +  D+ + NAL+ MY   G 
Sbjct: 1   MRAEGVCCNEFALPVVLK-CVPDA--QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 322 LEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
           ++DA  VF     +++ +SW+ ++S   +N    +A+++F  M  S I+P       V+ 
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
           AC+ +  ++ G     +M    G +      + ++D+  + G++  A  +  +MP + D 
Sbjct: 118 ACTGSRNIDAG-RQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP-DSDV 175

Query: 441 VTWRALLGACKVHRNTDLAI 460
           V+W AL+  C ++ +   AI
Sbjct: 176 VSWNALISGCVLNGHDHRAI 195


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/611 (39%), Positives = 361/611 (59%), Gaps = 36/611 (5%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           GV  D  TY  L+K      AV+  + +H+H++  GF    F+ N L++++     +  A
Sbjct: 114 GVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVA 173

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +FD+  + +VV+W  MIS Y  +K  D++++L   M R  V P+  T  +VL AC  L
Sbjct: 174 RGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKL 233

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN-------------- 231
             L   +++H  +  +  E    + +ALID+YA  G++  A  +F+              
Sbjct: 234 KDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIV 293

Query: 232 -----------------EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
                            +MP RD V W ++I G+ Q +   E L+L++ M+ A    D+ 
Sbjct: 294 TGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEF 353

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRM 332
           T+ S+L AC  L  LELG  +  ++ K +   D  + NAL+DMY  CG++E A+ +F+ M
Sbjct: 354 TMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAM 413

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
             +D ISW+ +I GLA NGY +EAL +F  M  + I P+ +T +GVL AC+H+G V+ G 
Sbjct: 414 PHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGK 473

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
             F  M   +GI+P   HY CM+DLLGRAG L+EA ++I  MP +P+++ W +LLGAC+V
Sbjct: 474 KFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRV 533

Query: 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCS 512
           HR+ ++A  AA++IL L+P++   Y+LL NIYA   +W+++ EVRK M  RGI K PGCS
Sbjct: 534 HRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCS 593

Query: 513 WIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSI 572
            IE+N  +H F   D  HPQ  +I   L  +   L   GY+PDT+ V  D+  E+KE ++
Sbjct: 594 LIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAV 653

Query: 573 QYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF 632
             HSEKLAI FGL+S   G TIRI KNLR+C DCH  AKL +K+ N+ +++RD  R+HHF
Sbjct: 654 YRHSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHF 713

Query: 633 QDGNCSCGDYW 643
           + G+CSC DYW
Sbjct: 714 RHGSCSCKDYW 724



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/414 (31%), Positives = 212/414 (51%), Gaps = 59/414 (14%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL--LEEAQVLFDQMPE 137
           LIK C    ++ + K +H+  +  G      +   ++    K  L  +E A+++FD MP 
Sbjct: 25  LIKTC---KSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPG 81

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR--ACDSLIIL-RQL 194
            N   W  MI  Y      + A+ +   ML  GV P+ +TY  +L+    D+ +   R+L
Sbjct: 82  PNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGREL 141

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
           H  I+K+GF S+VFV++ALI +Y+  GE+  A  VF+     D+V WN +I G+ ++   
Sbjct: 142 HDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQF 201

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNAL 312
           DE++ L+  M+R        TL SVL AC+ L  L +G +VH +V  LK +   +L NAL
Sbjct: 202 DESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENAL 261

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS--------GLAQN-------------- 350
           +DMY  CG ++ A+ +F  M  +DVISW+ +++        GLA+N              
Sbjct: 262 IDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWT 321

Query: 351 ----GYSQ-----EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-W-------N 393
               GY Q     E L LF  M+ + IKP+  T+V +L AC+H G +E G W       N
Sbjct: 322 AMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKN 381

Query: 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
             K +  F G        + +ID+    G +++A+++ + MP+  D ++W A++
Sbjct: 382 EIK-IDSFVG--------NALIDMYFNCGNVEKAIRIFNAMPHR-DKISWTAVI 425



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 171/335 (51%), Gaps = 13/335 (3%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK--LGELRNAECVFNEMPTRD 237
           ++++ C S+  L+Q+H   I  G  S+  V + +I    K  LG++  A  VF+ MP  +
Sbjct: 24  SLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPN 83

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
             VWN++I G+++    + A+++Y  M   G   D+ T   +L+  T    ++ G ++H 
Sbjct: 84  HFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHD 143

Query: 298 HVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           H++K  +  ++ + NAL+ +Y   G +  A  VF R  + DV++W+ MISG  ++    E
Sbjct: 144 HIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDE 203

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           ++KLF+ M+  R+ P+ IT+V VL ACS    +  G    + +K    I+P R   + +I
Sbjct: 204 SMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDL-KIEPVRVLENALI 262

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA-ICAAKKILNLDPQ-D 473
           D+    G +  A+ +   M    D ++W A++        T+L  +  A+   +  P+ D
Sbjct: 263 DMYAACGDMDTALGIFDNMKSR-DVISWTAIVTGF-----TNLGQVGLARNYFDKMPERD 316

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
             ++  + + Y    ++ EV  + + M+A  I  +
Sbjct: 317 FVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPD 351



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 160/374 (42%), Gaps = 46/374 (12%)

Query: 53  RDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
           +    +MK    M+   V   S+T   ++  C     +   K VH +V     EP   L 
Sbjct: 199 KQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLE 258

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNV-------------------------------V 141
           N L++M+     ++ A  +FD M  R+V                               V
Sbjct: 259 NALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFV 318

Query: 142 SWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGI 198
           SWT MI  Y       + L L   M    ++P+ FT  ++L AC  L  L     +   I
Sbjct: 319 SWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYI 378

Query: 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEAL 258
            K   + D FV +ALID+Y   G +  A  +FN MP RD + W ++I G A N   +EAL
Sbjct: 379 DKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEAL 438

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNA----LLD 314
           +++ +M +A    D+ T   VL ACT   +++ G +     +   H +  N A    ++D
Sbjct: 439 DMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFAR-MTTQHGIEPNVAHYGCMVD 497

Query: 315 MYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-- 371
           +  + G L++A  V   M ++ + I W +++   A   +  E +    + ++  ++P   
Sbjct: 498 LLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLG--ACRVHRDEEMAEMAAQQILELEPENG 555

Query: 372 --YITIVGVLFACS 383
             Y+ +  +  AC+
Sbjct: 556 AVYVLLCNIYAACN 569


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/588 (38%), Positives = 362/588 (61%), Gaps = 8/588 (1%)

Query: 62  MHAMQCHGVRADSVTYAELIKCCLA-RHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHV 120
           M  ++C G++ D  T   ++K   +    +  +K +H H +      ++F+   L++ + 
Sbjct: 412 MQLLRC-GLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYS 470

Query: 121 KFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSA 180
           +   ++EA+VLF +    ++V+W  M+S Y  +    K LEL   M ++G R + FT + 
Sbjct: 471 RNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLAT 529

Query: 181 VLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           VL+ C  L  +   +Q+H   IK G++ D++V S ++D+Y K G++  A+  F+ +P  D
Sbjct: 530 VLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPD 589

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
            V W ++I G  +N + + AL+++ +M+  G   D+ T+ ++ +A + L  LE G Q+H 
Sbjct: 590 DVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHA 649

Query: 298 HVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           + LK +   D  +  +L+DMY KCGS++DA  +F R+   ++ +W+ M+ GLAQ+G  +E
Sbjct: 650 NALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKE 709

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           AL+LF+ M+   IKP+ +T +GVL ACSH+G V + + + +SM + YGI P  EHYSC+ 
Sbjct: 710 ALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLA 769

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           D LGRAG ++EA  LI  M  E  A  +R LL AC+V  +T+     A K+L L+P D  
Sbjct: 770 DALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSS 829

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
            Y+LLSN+YA + KWDE+   R  M+   + K+PG SWIEV  +IH F V D S+PQ + 
Sbjct: 830 AYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTEL 889

Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
           I K +K +I+ +   GY P+T++ L D+E E+KE ++ YHSEKLA+ FGL+S      IR
Sbjct: 890 IYKKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIR 949

Query: 596 IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + KNLR+CGDCH   K  +K+ ++ IV+RD  R+H F+DG CSCGDYW
Sbjct: 950 VIKNLRVCGDCHNAMKYISKVYDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/446 (28%), Positives = 229/446 (51%), Gaps = 15/446 (3%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D VT+  ++   +   ++   + VH   L  G +    + N L+NM+ K   +  A+ +F
Sbjct: 321 DQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVF 380

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS----L 188
           + M ER+++SW ++I+    + +  +A+ L + +LR G++P+ +T ++VL+A  S    L
Sbjct: 381 NNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGL 440

Query: 189 IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
            + +Q+H   IK    +D FV +ALID Y++   ++ AE +F      DLV WN+++ G+
Sbjct: 441 SLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGY 499

Query: 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDL 306
            Q+ D  + L L+  M + G  +D  TL +VL+ C  L  +  G QVH + +K  YD DL
Sbjct: 500 TQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDL 559

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
            +++ +LDMY KCG +  A   F  +   D ++W+T+ISG  +NG  + AL +F  M++ 
Sbjct: 560 WVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLM 619

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
            + P+  TI  +  A S    +E G   H  ++K     DP     + ++D+  + G + 
Sbjct: 620 GVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVG--TSLVDMYAKCGSID 677

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI--LNLDPQDPGTYILLSNI 483
           +A  L   +    +   W A+L     H     A+   K++  L + P D  T+I + + 
Sbjct: 678 DAYCLFKRIEMM-NITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKP-DKVTFIGVLSA 735

Query: 484 YANSQKWDEVAE-VRKTMRARGITKE 508
            ++S    E  + +R   R  GI  E
Sbjct: 736 CSHSGLVSEAYKYIRSMHRDYGIKPE 761



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 187/390 (47%), Gaps = 18/390 (4%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D V +  ++K  L     EEA  + +   + G  P    + +L  +    S  E  QV  
Sbjct: 217 DVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDS--EAGQVKS 274

Query: 133 -----DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC-- 185
                D      ++S   ++S Y  A      L+  + M+   +  +  T+  VL     
Sbjct: 275 FENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVR 334

Query: 186 -DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
            DSL + +Q+HC  +K+G +  + V ++LI++Y KL ++  A  VFN M  RDL+ WNS+
Sbjct: 335 LDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSV 394

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL-LELGTQVHVHVLKYD 303
           I G AQ+    EA+ L+ ++ R G   D  T+TSVL+A + L   L L  Q+HVH +K +
Sbjct: 395 IAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTN 454

Query: 304 H--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
           +  D  ++ AL+D Y +   +++A  +F R    D+++W+ M+SG  Q+    + L+LF 
Sbjct: 455 NVADSFVSTALIDAYSRNRCMKEAEVLFGRN-NFDLVAWNAMMSGYTQSHDGHKTLELFA 513

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGR 420
            M     + +  T+  VL  C     +  G   H  ++K  Y +D      S ++D+  +
Sbjct: 514 LMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS--SGILDMYVK 571

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
            G +  A      +P  PD V W  L+  C
Sbjct: 572 CGDMSAAQFAFDSIPV-PDDVAWTTLISGC 600



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 138/284 (48%), Gaps = 25/284 (8%)

Query: 66  QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL 125
           QC G   D+++ ++L+            K  H  +L+    PE FLVN L++M+ K   L
Sbjct: 48  QCFGFLRDAISTSDLML----------GKCTHARILALEENPERFLVNNLISMYSKCGSL 97

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKM----NDKALELLIFMLREGV-RPNMFTYSA 180
             A+ +FD+MPER++VSW ++++AY  +      N K   LL  +LR+ V   +  T S 
Sbjct: 98  TYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSP 157

Query: 181 VLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           +L+ C     +      H    K+G + D FV  AL++IY K G+++    +F EMP RD
Sbjct: 158 MLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRD 217

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           +V+WN ++  + +    +EA++L      +G   ++ TL  + R     +  E G QV  
Sbjct: 218 VVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDS--EAG-QVKS 274

Query: 298 HVLKYD----HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
                D     ++I  N +L  Y   G     +  F  M++ D+
Sbjct: 275 FENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDL 318



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 104/195 (53%), Gaps = 7/195 (3%)

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L++ +  H  I+ +    + F+ + LI +Y+K G L  A  VF++MP RDLV WNSI+  
Sbjct: 62  LMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAA 121

Query: 248 FAQNSD-----VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK- 301
           +AQ+S+     V EA  L++ +++      + TL+ +L+ C     +      H +  K 
Sbjct: 122 YAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKI 181

Query: 302 -YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
             D D  +  AL+++Y K G +++   +F  M  +DV+ W+ M+    + G+ +EA+ L 
Sbjct: 182 GLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLS 241

Query: 361 ESMKVSRIKPNYITI 375
            +   S + PN IT+
Sbjct: 242 SAFHTSGLHPNEITL 256



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 9/177 (5%)

Query: 280 LRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
           LR     + L LG   H  +L  +   +  L N L+ MY KCGSL  A  VF +M ++D+
Sbjct: 53  LRDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDL 112

Query: 338 ISWSTMISGLAQNGYS-----QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
           +SW+++++  AQ+        +EA  LF  ++   +  + +T+  +L  C H+G+V    
Sbjct: 113 VSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV-CAS 171

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
             F       G+D        ++++  + GK++E   L  EMPY  D V W  +L A
Sbjct: 172 ESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYR-DVVLWNLMLKA 227


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/577 (38%), Positives = 353/577 (61%), Gaps = 6/577 (1%)

Query: 73   DSVTYAELIKCCLA-RHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVL 131
            D  T A +++ C +       A  +H   +  G   ++F+   L++++ K   +EEA+ L
Sbjct: 1035 DQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFL 1094

Query: 132  FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL 191
            F      ++ SW  ++  Y  +    KAL L I M   G R +  T     +A   L+ L
Sbjct: 1095 FVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGL 1154

Query: 192  RQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
            +Q   +H  ++K GF  D+FV S ++D+Y K GE+ +A  VF+E+P+ D V W ++I G 
Sbjct: 1155 KQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGC 1214

Query: 249  AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDL 306
             +N   + AL  Y +M+ +    D+ T  ++++AC+ L  LE G Q+H +++K +   D 
Sbjct: 1215 VENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDP 1274

Query: 307  ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
             +  +L+DMY KCG++EDA  +F R   + + SW+ MI GLAQ+G ++EAL+ F+ MK  
Sbjct: 1275 FVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSR 1334

Query: 367  RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
             + P+ +T +GVL ACSH+G V + + +F SM+K YGI+P  EHYSC++D L RAG+++E
Sbjct: 1335 GVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEE 1394

Query: 427  AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
            A K+I  MP+E  A  +R LL AC+V  + +     A+K+L L+P D   Y+LLSN+YA 
Sbjct: 1395 AEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAA 1454

Query: 487  SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
            + +W+ VA  R  MR   + K+PG SW+++  ++H F   D SH + D I   +++++++
Sbjct: 1455 ANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKR 1514

Query: 547  LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
            +   GY PDT++ L D+E E KE S+ YHSEKLAI +GLM      T+R+ KNLR+CGDC
Sbjct: 1515 IREEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDC 1574

Query: 607  HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            H+  K  +K+  + IV+RD  R+HHF++G CSCGDYW
Sbjct: 1575 HSAIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/422 (31%), Positives = 224/422 (53%), Gaps = 10/422 (2%)

Query: 46   FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105
             +RF  + +   A+     M    V  D +T+  ++      + +E  K +H  V+  G 
Sbjct: 907  LSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGL 966

Query: 106  EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
            +    + N L+NM+VK   +  A+ +F QM E +++SW TMIS    + + + ++ + + 
Sbjct: 967  DQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVH 1026

Query: 166  MLREGVRPNMFTYSAVLRACDSL----IILRQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
            +LR+ + P+ FT ++VLRAC SL     +  Q+H   +K G   D FV +ALID+Y+K G
Sbjct: 1027 LLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRG 1086

Query: 222  ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
            ++  AE +F      DL  WN+I+ G+  + D  +AL LY  M+ +G  +DQ TL +  +
Sbjct: 1087 KMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAK 1146

Query: 282  ACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
            A  GL  L+ G Q+H  V+K  ++ DL + + +LDMY KCG +E A  VFS +   D ++
Sbjct: 1147 AAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVA 1206

Query: 340  WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSM 398
            W+TMISG  +NG  + AL  +  M++S+++P+  T   ++ ACS    +E G   H   +
Sbjct: 1207 WTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIV 1266

Query: 399  KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
            K     DP     + ++D+  + G +++A  L         A +W A++     H N   
Sbjct: 1267 KLNCAFDPFV--MTSLVDMYAKCGNIEDARGLFKRTNTRRIA-SWNAMIVGLAQHGNAKE 1323

Query: 459  AI 460
            A+
Sbjct: 1324 AL 1325



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 185/380 (48%), Gaps = 39/380 (10%)

Query: 76   TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
            T A + K CL   +   ++ +H + +  G + + F+   L+N++ KF L+ EA+VLFD M
Sbjct: 762  TLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGM 821

Query: 136  PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN---MFTYSAVLRACDSLIILR 192
              R+VV W  M+ AY D  +  +A+ L     R G RP+   + T S V++   +++ L+
Sbjct: 822  AVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELK 881

Query: 193  QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            Q      K+    D                              D++VWN  +  F Q  
Sbjct: 882  QFKAYATKLFMYDD---------------------------DGSDVIVWNKALSRFLQRG 914

Query: 253  DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN--N 310
            +  EA++ +  M  +  A D  T   +L    GL  LELG Q+H  V++   D +++  N
Sbjct: 915  EAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGN 974

Query: 311  ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
             L++MY K GS+  A SVF +M + D+ISW+TMISG   +G  + ++ +F  +    + P
Sbjct: 975  CLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLP 1034

Query: 371  NYITIVGVLFACS--HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
            +  T+  VL ACS    G+      H  +MK    +D      + +ID+  + GK++EA 
Sbjct: 1035 DQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVS--TALIDVYSKRGKMEEAE 1092

Query: 429  KL-IHEMPYEPDAVTWRALL 447
             L +++  +  D  +W A++
Sbjct: 1093 FLFVNQDGF--DLASWNAIM 1110



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 172/381 (45%), Gaps = 37/381 (9%)

Query: 80   LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE-- 137
            +++  +A   +   K  H  +L+ G  P+ F+ N L+ M+ K   L  A+ LFD  P+  
Sbjct: 662  ILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTN 721

Query: 138  RNVVSWTTMISAYC-DAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQ 193
            R++V+W  ++SA    A  +     L   + R  V     T + V + C    S      
Sbjct: 722  RDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASES 781

Query: 194  LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
            LH   +K+G + DVFV  AL++IYAK G +R A  +F+ M  RD+V+WN ++  +     
Sbjct: 782  LHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCL 841

Query: 254  VDEALNLYKRMKRAGFAADQSTLTSVLRACT-GLALLELGTQVHVHVLKYDHDLILNNAL 312
              EA+ L+    R GF  D  TL ++ R       +LEL  Q   +  K           
Sbjct: 842  EYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILEL-KQFKAYATK----------- 889

Query: 313  LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
            L MY   GS              DVI W+  +S   Q G + EA+  F  M  SR+  + 
Sbjct: 890  LFMYDDDGS--------------DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDG 935

Query: 373  ITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            +T V +L   +    +E G   H   M+   G+D      +C+I++  +AG +  A  + 
Sbjct: 936  LTFVVMLTVVAGLNCLELGKQIHGIVMRS--GLDQVVSVGNCLINMYVKAGSVSRARSVF 993

Query: 432  HEMPYEPDAVTWRALLGACKV 452
             +M  E D ++W  ++  C +
Sbjct: 994  GQMN-EVDLISWNTMISGCTL 1013



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 5/208 (2%)

Query: 173 PNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           P  F+      A   L + ++ H  I+  G   D FV + LI +YAK G L +A  +F+ 
Sbjct: 657 PQCFSILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDT 716

Query: 233 MP--TRDLVVWNSIIGGFAQNSDVD-EALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
            P   RDLV WN+I+   A ++D   +  +L++ ++R+  +  + TL  V + C   A  
Sbjct: 717 TPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASP 776

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
                +H + +K     D+ +  AL+++Y K G + +A  +F  M  +DV+ W+ M+   
Sbjct: 777 SASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAY 836

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITI 375
                  EA+ LF     +  +P+ +T+
Sbjct: 837 VDTCLEYEAMLLFSEFHRTGFRPDDVTL 864



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 91/183 (49%), Gaps = 8/183 (4%)

Query: 58   AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHV--LSGGFEPETFLVNIL 115
            A+   H M+   V+ D  T+A L+K C    A+E+ + +H ++  L+  F+P  F++  L
Sbjct: 1223 ALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDP--FVMTSL 1280

Query: 116  LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
            ++M+ K   +E+A+ LF +   R + SW  MI          +AL+   +M   GV P+ 
Sbjct: 1281 VDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDR 1340

Query: 176  FTYSAVLRACDSLIILRQLHCGIIKV----GFESDVFVRSALIDIYAKLGELRNAECVFN 231
             T+  VL AC    ++ + +     +    G E ++   S L+D  ++ G +  AE V +
Sbjct: 1341 VTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVIS 1400

Query: 232  EMP 234
             MP
Sbjct: 1401 SMP 1403


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/570 (40%), Positives = 357/570 (62%), Gaps = 5/570 (0%)

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
           E++K C  R  + + K  H  +L  G + +    NIL+NM+ K   ++ A+ +FD+MP R
Sbjct: 69  EILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSR 128

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LH 195
           ++VSW TMI +       ++AL+LL+ M REG   + FT S+VL AC +   L +   LH
Sbjct: 129 SLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLH 188

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
              IK   + +VFV +AL+D+YAK G +++A CVF  MP R +V W+S+  G+ QN   +
Sbjct: 189 AFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYE 248

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
           +AL L+++    G   DQ  ++SV+ AC GLA +  G Q++  + K  +  ++ + ++L+
Sbjct: 249 QALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLI 308

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           DMY KCG +E++  VF  + +++V+ W+ MISGL+++  S E + LFE M+   + PN +
Sbjct: 309 DMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDV 368

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
           T V VL AC H G V  G  +F  M K + + P   HYSCM+D L RAG++ EA  LI +
Sbjct: 369 TFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISK 428

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
           +P+   A  W +LL +C+ H N +LA  AAKK+ +++P + G Y+LLSN+YA + KWDEV
Sbjct: 429 LPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEV 488

Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYA 553
           A++RK ++   + KE G SWIE+  ++H F V + +HP+I +I   L  ++ +L  +GY 
Sbjct: 489 AKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYK 548

Query: 554 PDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLT 613
            +T + L  +    K++ +++HSEKLA   GL+ L     IRI KNLRICGDCH+F KL 
Sbjct: 549 VETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLA 608

Query: 614 AKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +K   + +++RD  R+HHF++G CSCGD+W
Sbjct: 609 SKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 166/302 (54%), Gaps = 9/302 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+  +  MQ  G      T + ++  C A+ A+ E +L+H   +    +   F+   LL+
Sbjct: 149 ALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLD 208

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++ K  L+++A  +F+ MP+R+VV+W++M + Y   +M ++AL L       G++ + F 
Sbjct: 209 VYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFL 268

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            S+V+ AC  L  +   +Q++  + K GF S++FV S+LID+YAK G +  +  VF ++ 
Sbjct: 269 MSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE 328

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            R++V+WN++I G ++++   E + L+++M++ G + +  T  SVL AC  + L+  G Q
Sbjct: 329 KRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKG-Q 387

Query: 295 VHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQ 349
            +  ++  +H L  N    + ++D   + G + +A  + S++        W ++++    
Sbjct: 388 KYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRT 447

Query: 350 NG 351
           +G
Sbjct: 448 HG 449


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/611 (37%), Positives = 362/611 (59%), Gaps = 10/611 (1%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHG--VRADSVTYAELIKCCLARHAVEEAKLVH 97
           +S++  + R   + D+ R    +  MQ     ++AD  T   ++  CL R  ++  K +H
Sbjct: 274 NSMIGGYAR---EEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELH 330

Query: 98  NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND 157
            +    G +    + N  +  + +   L  ++ +FD M  + V SW  ++  Y       
Sbjct: 331 GYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPR 390

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALI 214
           KAL+L + M   G+ P+ FT  ++L AC  +  L    ++H   ++ G   D F+  +L+
Sbjct: 391 KALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLL 450

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
            +Y   G+   A+ +F+ M  R LV WN +I G++QN   DEA+NL+++M   G    + 
Sbjct: 451 SLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEI 510

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
            +  V  AC+ L+ L LG ++H   LK     D+ ++++++DMY K G +  +  +F R+
Sbjct: 511 AIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRL 570

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
            +KDV SW+ +I+G   +G  +EAL+LFE M    +KP+  T  G+L ACSHAG VEDG 
Sbjct: 571 REKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGL 630

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
            +F  M   + I+P  EHY+C++D+LGRAG++ +A++LI EMP +PD+  W +LL +C++
Sbjct: 631 EYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRI 690

Query: 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCS 512
           H N  L    A K+L L+P+ P  Y+L+SN++A S KWD+V  VR  M+  G+ K+ GCS
Sbjct: 691 HGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCS 750

Query: 513 WIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSI 572
           WIEV  ++H F + D   P+++++ +  + L  K+  +GY PDT  VL DLE E K   +
Sbjct: 751 WIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGIL 810

Query: 573 QYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF 632
           + HSEKLAI FGL++  +G  +R+ KNLRICGDCH  AK  +K+ N+ IV+RD  R+HHF
Sbjct: 811 RGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHF 870

Query: 633 QDGNCSCGDYW 643
           +DG CSCGDYW
Sbjct: 871 RDGICSCGDYW 881



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 124/411 (30%), Positives = 202/411 (49%), Gaps = 13/411 (3%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D  T   ++  C     +E+   VH   +  G   E  + N L++M+ K   L EAQ+LF
Sbjct: 203 DVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLF 262

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG--VRPNMFTYSAVLRAC---DS 187
           D+  ++N+VSW +MI  Y   +   +   LL  M  E   ++ + FT   VL  C     
Sbjct: 263 DKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSE 322

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L  L++LH    + G +S+  V +A I  Y + G L ++E VF+ M T+ +  WN+++ G
Sbjct: 323 LQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCG 382

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--D 305
           +AQNSD  +AL+LY +M  +G   D  T+ S+L AC+ +  L  G ++H   L+     D
Sbjct: 383 YAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVD 442

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
             +  +LL +Y  CG    A  +F  M  + ++SW+ MI+G +QNG   EA+ LF  M  
Sbjct: 443 PFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLS 502

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
             I+P  I I+ V  ACS    +  G   H  ++K     D      S +ID+  + G +
Sbjct: 503 DGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVS--SSIIDMYAKGGCI 560

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI--LNLDPQD 473
             + ++   +  E D  +W  ++    +H     A+   +K+  L L P D
Sbjct: 561 GLSQRIFDRL-REKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDD 610



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 215/432 (49%), Gaps = 38/432 (8%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI-LLNMHVKFSLLEEAQVLFDQMPER 138
           L++ C  R  +E  + +H  V +       F++N  ++ M+       +++++FD++  +
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGV-RPNMFTYSAVLRACDSLIIL---RQL 194
           N+  W  ++SAY   ++ + A+ +   ++     +P+ FT   V++AC  L+ L   + +
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQII 123

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
           H    K+   SDVFV +ALI +Y K G +  A  VF  MP R+LV WNSII GF++N  +
Sbjct: 124 HGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFL 183

Query: 255 DEALNLYKRM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNN 310
            E+ N ++ M      F  D +TL +VL  C G   +E G  VH   +K   + +L++NN
Sbjct: 184 QESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNN 243

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV--SRI 368
           +L+DMY KC  L +A  +F +  +K+++SW++MI G A+         L + M+   +++
Sbjct: 244 SLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKM 303

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF------YGIDPGREHYSCMIDLLGRAG 422
           K +  TI+ VL  C          +  +S+K+       +G+       +  I    R G
Sbjct: 304 KADEFTILNVLPVCLER-------SELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCG 356

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ------DPGT 476
            L  + ++   M  +    +W ALL  C   +N+D      +K L+L  Q      DP  
Sbjct: 357 ALCSSERVFDLMDTKT-VSSWNALL--CGYAQNSD-----PRKALDLYLQMTDSGLDPDW 408

Query: 477 YILLSNIYANSQ 488
           + + S + A S+
Sbjct: 409 FTIGSLLLACSR 420



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 177/348 (50%), Gaps = 14/348 (4%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           + D+ T   +IK C     +   +++H          + F+ N L+ M+ K  L+EEA  
Sbjct: 98  KPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVK 157

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML--REGVRPNMFTYSAVLRACDSL 188
           +F+ MPERN+VSW ++I  + +     ++      ML   E   P++ T   VL  C   
Sbjct: 158 VFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGE 217

Query: 189 IILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             + +   +H   +K+G   ++ V ++LID+Y+K   L  A+ +F++   +++V WNS+I
Sbjct: 218 EDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMI 277

Query: 246 GGFAQNSDVDEALNLYKRMKR--AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD 303
           GG+A+  DV     L ++M+   A   AD+ T+ +VL  C  L   EL +   +H   + 
Sbjct: 278 GGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVC--LERSELQSLKELHGYSWR 335

Query: 304 HDL----ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
           H L    ++ NA +  Y +CG+L  +  VF  M  K V SW+ ++ G AQN   ++AL L
Sbjct: 336 HGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDL 395

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDP 406
           +  M  S + P++ TI  +L ACS    +  G   H  +++    +DP
Sbjct: 396 YLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDP 443


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/654 (38%), Positives = 383/654 (58%), Gaps = 48/654 (7%)

Query: 19  RQFSLTITPPVASCNTITRNSSSLLDDFTRFCY---QRDLPRAMKAMHAMQCHGVRADSV 75
           R F L     V S N       SLL  + +  Y    R++   M   +++  +G+ A  V
Sbjct: 132 RLFDLMPEKDVVSWN-------SLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYV 184

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL-----------------VNILLNM 118
               + + CL   +  +  L+  + L GGF  +  L                  N +++ 
Sbjct: 185 HNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISG 244

Query: 119 HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTY 178
           + +   L +A+ LFD+ P R+V +WT M+S Y    M D+A      M  +    N  +Y
Sbjct: 245 YAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSY 300

Query: 179 SAVLRA---CDSLIILRQLHCGIIKVGFES----DVFVRSALIDIYAKLGELRNAECVFN 231
           +A++        + I R+L        FES    ++   + +I  Y ++G++  A   F+
Sbjct: 301 NAMIAGYVQTKKMDIAREL--------FESMPCRNISSWNTMITGYGQIGDIAQARKFFD 352

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
            MP RD V W +II G+AQ+   +EALN++  +K+ G + +++T    L  C  +A LEL
Sbjct: 353 MMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALEL 412

Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G Q+H   +K  Y     + NALL MY KCGS+++A   F  + +KDV+SW+TM++G A+
Sbjct: 413 GKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYAR 472

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           +G+ ++AL +FESMK + +KP+ IT+VGVL ACSH G ++ G  +F SM K YG+ P  +
Sbjct: 473 HGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSK 532

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
           HY+CMIDLLGRAG+L+EA  LI  MP++P A +W ALLGA ++H NT+L   AA+ +  +
Sbjct: 533 HYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKM 592

Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
           +PQ+ G Y+LLSN+YA S +W +  ++R  MR  G+ K PG SW+EV  +IH F+V D S
Sbjct: 593 EPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCS 652

Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
           HP+ ++I  +L+ L  K+   GY   T  VL D+E E+KE  ++YHSEKLA+ FG++++ 
Sbjct: 653 HPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIP 712

Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            G+ IR+ KNLR+C DCH+  K  +K+  + I++RD  R+HHF +G CSCGDYW
Sbjct: 713 GGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 126/266 (47%), Gaps = 57/266 (21%)

Query: 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP 438
           L    + G ++ G  +F  M + Y + P  +HY+CMIDLLGR  +L+E            
Sbjct: 771 LLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG----------- 819

Query: 439 DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRK 498
                 ALLGA ++H NT+L   AA+    + PQ+ G                       
Sbjct: 820 ------ALLGASRIHGNTELGEKAAQMFFKMGPQNSGI---------------------S 852

Query: 499 TMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNY 558
            MR  G+ K PG SW EV  +IH F+V                 L ++   +G+  + + 
Sbjct: 853 KMRDVGVQKVPGYSWFEVQNKIHTFSVG--------------LFLSRERENIGFLEELDL 898

Query: 559 VLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRI-RKNLRICGDCHTFAKLTAKME 617
            +++ E E+KE +++Y SE LA   G++++  G+  R+ +K + +C DC +  K  +K+ 
Sbjct: 899 KMRERE-EEKERTLKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIV 957

Query: 618 NQTIVIRDPIRYHHFQDGNCSCGDYW 643
            + I +RD    H F +  CSCG+YW
Sbjct: 958 GRLITLRDS---HRFNESICSCGEYW 980



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 177/414 (42%), Gaps = 48/414 (11%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R  SV+Y  +I   L       A+ + + +     E + F  N++L  +V+   L +A+ 
Sbjct: 77  RRSSVSYNAMISGYLRNSKFNLARNLFDQMP----ERDLFSWNVMLTGYVRNCRLGDARR 132

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA------ 184
           LFD MPE++VVSW +++S Y      D+A E+   M  +    N  +++ +L A      
Sbjct: 133 LFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEK----NSISWNGLLAAYVHNGR 188

Query: 185 --------------------CDSLIILRQLHCGIIKVGFES----DVFVRSALIDIYAKL 220
                               C     +R+   G  +  F+     D    + +I  YA+ 
Sbjct: 189 IEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQG 248

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           G L  A  +F+E PTRD+  W +++ G+ QN  +DEA   +  M      +  + +   +
Sbjct: 249 GGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYV 308

Query: 281 RACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           +        EL   +         ++   N ++  Y + G +  A   F  M Q+D +SW
Sbjct: 309 QTKKMDIARELFESMPC------RNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSW 362

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMK 399
           + +I+G AQ+G+ +EAL +F  +K      N  T    L  C+    +E G   H +++K
Sbjct: 363 AAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVK 422

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             YG   G    + ++ +  + G + EA      +  E D V+W  +L     H
Sbjct: 423 MGYGT--GCFVGNALLAMYFKCGSIDEANDTFEGIE-EKDVVSWNTMLAGYARH 473



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 185/436 (42%), Gaps = 82/436 (18%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC-DAKMNDKALELLI 164
           +P+    N  ++ H++    + A  +F+ MP R+ VS+  MIS Y  ++K N        
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFN-------- 97

Query: 165 FMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
                 +  N+F                           E D+F  + ++  Y +   L 
Sbjct: 98  ------LARNLFDQMP-----------------------ERDLFSWNVMLTGYVRNCRLG 128

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL---R 281
           +A  +F+ MP +D+V WNS++ G+AQN  VDEA  ++  M      +    L + +   R
Sbjct: 129 DARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGR 188

Query: 282 ACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
                 L E          K D DLI  N L+  + +   L DA  +F +M  +D ISW+
Sbjct: 189 IEEACLLFE---------SKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWN 239

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
           TMISG AQ G   +A +LF+    +R    +  +V        +G+V++G       K F
Sbjct: 240 TMISGYAQGGGLSQARRLFDE-SPTRDVFTWTAMV--------SGYVQNG--MLDEAKTF 288

Query: 402 YGIDPGREH--YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL-GACKVHRNTDL 458
           +   P +    Y+ MI    +  K+  A +L   MP   +  +W  ++ G  ++      
Sbjct: 289 FDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCR-NISSWNTMITGYGQIG----- 342

Query: 459 AICAAKKILNLDPQ-DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEP---GCSW- 513
            I  A+K  ++ PQ D  ++  +   YA S  ++E   +   ++  G +      GC+  
Sbjct: 343 DIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALS 402

Query: 514 -------IEVNKQIHA 522
                  +E+ KQIH 
Sbjct: 403 TCADIAALELGKQIHG 418


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/600 (39%), Positives = 354/600 (59%), Gaps = 39/600 (6%)

Query: 83  CCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVS 142
           C  AR +   AK +H  ++  G      + N LLN + K  L+++A  LFD +P R+ V+
Sbjct: 12  CSAARQSPLLAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVA 71

Query: 143 WTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL-----RQLHCG 197
           W ++++A   +    +AL +   +L  G  P+ F ++++++AC +L +L     +Q+H  
Sbjct: 72  WASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHAR 131

Query: 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFN-------------------------- 231
                F  D  V+S+LID+YAK G       VF+                          
Sbjct: 132 FFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEA 191

Query: 232 -----EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLRACTG 285
                + P R+L  W ++I G  Q+ +  +A +L+  M+  G +  D   L+SV+ AC  
Sbjct: 192 FRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACAN 251

Query: 286 LALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           LAL ELG Q+H  V  L Y+  L ++NAL+DMY KC  L  A  +F  M +KDV+SW+++
Sbjct: 252 LALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSI 311

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           I G AQ+G ++EAL L++ M ++ +KPN +T VG++ ACSHAG V  G   F++M + +G
Sbjct: 312 IVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHG 371

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           I P  +HY+C++DL  R+G L EA  LI  MP  PD  TW ALL +CK H NT +A+  A
Sbjct: 372 ISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIA 431

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
             +LNL P+DP +YILLSNIYA +  W++V++VRK M      K PG S I++ K  H F
Sbjct: 432 DHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVF 491

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
              ++SHP  D+I   ++ L +++   GYAPDT+ VL D++ ++KE  + +HSE+LA+ +
Sbjct: 492 YAGETSHPMRDEIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAY 551

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GL+    G  IRI KNLR+CGDCHT  KL + + N+ I +RD  RYHHF+DGNCSC D+W
Sbjct: 552 GLLKAVPGTVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHHFKDGNCSCNDFW 611



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 198/422 (46%), Gaps = 52/422 (12%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCC--LARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           RA+    ++   G   D   +A L+K C  L    V++ K VH       F  +  + + 
Sbjct: 87  RALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSS 146

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALE------------- 161
           L++M+ KF L +  + +FD +   N +SWTTMIS Y  +    +A               
Sbjct: 147 LIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAW 206

Query: 162 ------------------LLIFMLREGVR-PNMFTYSAVLRACDSLIIL---RQLHCGII 199
                             L + M  EG+   +    S+V+ AC +L +    +Q+H  +I
Sbjct: 207 TALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVI 266

Query: 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN 259
            +G+ES +F+ +ALID+YAK  +L  A+ +F EM  +D+V W SII G AQ+   +EAL 
Sbjct: 267 TLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALA 326

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDM 315
           LY  M  AG   ++ T   ++ AC+   L+  G  +    +  DH +  +      LLD+
Sbjct: 327 LYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTL-FRTMVEDHGISPSLQHYTCLLDL 385

Query: 316 YCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFES-MKVSRIKPNYI 373
           + + G L++A ++   M +  D  +W+ ++S   ++G +Q A+++ +  + +    P+  
Sbjct: 386 FSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDPSSY 445

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGID-PGREHYSCMIDLLGRAGKLQEAVKLIH 432
            ++  ++A   AG  ED     K M        PG   YSC ID LG+   +  A +  H
Sbjct: 446 ILLSNIYA--GAGMWEDVSKVRKLMMTLEAKKAPG---YSC-ID-LGKGSHVFYAGETSH 498

Query: 433 EM 434
            M
Sbjct: 499 PM 500


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/580 (38%), Positives = 356/580 (61%), Gaps = 6/580 (1%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G      TY  L+  C+   ++   K V N++++ GFEP+ +++N +L +HVK  L+ +A
Sbjct: 112 GFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDA 171

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + LFD+MPE+++ SW TMI  + D+    +A  L + M  E       T++ ++RA   L
Sbjct: 172 RKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGL 231

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
            ++   RQ+H   +K G   D FV  ALID+Y+K G + +A CVF++MP +  V WNSII
Sbjct: 232 GLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSII 291

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YD 303
             +A +   +EAL+ Y  M+ +G   D  T++ V+R C  LA LE   Q H  +++  YD
Sbjct: 292 ASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYD 351

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D++ N AL+D Y K G +EDA  VF+RM +K+VISW+ +I+G   +G  +EA+++FE M
Sbjct: 352 TDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQM 411

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
               + PN++T + VL ACS++G  E GW  F SM + + + P   HY+CM++LLGR G 
Sbjct: 412 LREGMIPNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGL 471

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L EA +LI   P++P    W  LL AC++H N +L   AA+ +  ++P+    YI+L N+
Sbjct: 472 LDEAYELIRSAPFKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCNYIVLLNL 531

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           Y +S K  E A V +T++ +G+   P C+WIEV KQ +AF   D SH Q  +I + + ++
Sbjct: 532 YNSSGKLKEAAGVLQTLKRKGLRMLPACTWIEVKKQSYAFLCGDKSHSQTKEIYEKVNNM 591

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
           + ++   GY  +   +L D++ E+++  ++YHSEKLAI FGL++      ++I +  R+C
Sbjct: 592 MVEISRHGYVEENKALLPDVD-EEEQRILKYHSEKLAIAFGLINTPHWTPLQITQGHRVC 650

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GDCH+  K  A +  + IV+RD  R+HHF+DG+CSCGDYW
Sbjct: 651 GDCHSAIKFIAMVTGREIVVRDASRFHHFRDGSCSCGDYW 690



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 132/287 (45%), Gaps = 43/287 (14%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+   + M+  G + D  T + +I+ C    ++E AK  H  ++  G++ +      L++
Sbjct: 303 ALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVD 362

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            + K+  +E+A  +F++M  +NV+SW  +I+ Y +    ++A+E+   MLREG+ PN  T
Sbjct: 363 FYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVT 422

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           + AVL AC         + G+ + G+E                        +F  M +RD
Sbjct: 423 FLAVLSACS--------YSGLSERGWE------------------------IFYSM-SRD 449

Query: 238 LVV------WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
             V      +  ++    +   +DEA   Y+ ++ A F    +   ++L AC     LEL
Sbjct: 450 HKVKPRAMHYACMVELLGREGLLDEA---YELIRSAPFKPTTNMWATLLTACRMHENLEL 506

Query: 292 GTQVHVHVLKYDHDLILNN-ALLDMYCKCGSLEDAMSVFSRMIQKDV 337
           G     ++   + + + N   LL++Y   G L++A  V   + +K +
Sbjct: 507 GKLAAENLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGVLQTLKRKGL 553


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/626 (38%), Positives = 361/626 (57%), Gaps = 40/626 (6%)

Query: 58  AMKAMHAMQCHG-VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            M+A   M   G    ++   A +++CC     VE  K VH  +L  G   +  L N +L
Sbjct: 95  GMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVL 154

Query: 117 NMHVKFSLLEEAQ-------------------------------VLFDQMPERNVVSWTT 145
           +M+ K    E A+                                LFD+ P R+  SW T
Sbjct: 155 DMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNT 214

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVG 202
           +IS    +     AL  L  M + GV  N +TYS        L++    RQLH  ++   
Sbjct: 215 IISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAA 274

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMP--TRDL-VVWNSIIGGFAQNSDVDEALN 259
            E D FVRS+L+D+Y K G L  A  VF+     TRD+   W++++ G+ QN   +EAL+
Sbjct: 275 LEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALD 334

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYC 317
           L++RM R G AAD+ TLTSV  AC  + ++E G QVH  V  L Y  D  L +A++DMY 
Sbjct: 335 LFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYA 394

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           KCG+LEDA S+F R   K++  W++M+   A +G  + A++LFE M   ++ PN IT+VG
Sbjct: 395 KCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVG 454

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           VL ACSH G V +G  +FK M++ YGI P  EHY+C++DL GR+G L +A   I E    
Sbjct: 455 VLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNIN 514

Query: 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497
            +A+ W+ LL AC++H++ + A  A++K++ L+  D G+Y++LSNIYA + KW +  E+R
Sbjct: 515 HEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELR 574

Query: 498 KTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTN 557
            +M+ R + K+PG SWI +   +H F   D+SHPQ  +I  +L+ L+++L  +GY   T+
Sbjct: 575 VSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKEIGYTSRTD 634

Query: 558 YVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKME 617
            V+ D+E EQ+E ++++HSEKLAI FG++S   G  +RI KNLR+C DCH   K  +   
Sbjct: 635 LVVHDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNLRVCEDCHEAIKYISLAT 694

Query: 618 NQTIVIRDPIRYHHFQDGNCSCGDYW 643
            + IV+RD  R+HHF+D +CSC D+W
Sbjct: 695 GREIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 180/387 (46%), Gaps = 44/387 (11%)

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRP 173
           +L   V+     +A+ +FD+ P R    WT  IS           +     ML EG   P
Sbjct: 51  VLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATP 110

Query: 174 NMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE--- 227
           N F  +AV+R C  +  +   +++H  +++ G   DV + +A++D+YAK G+   A    
Sbjct: 111 NAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVF 170

Query: 228 -----------------CV-----------FNEMPTRDLVVWNSIIGGFAQNSDVDEALN 259
                            C+           F+E P RD   WN+II G  ++    +AL+
Sbjct: 171 GAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALS 230

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYC 317
             +RM +AG   +  T ++       L L +LG Q+H  VL    + D  + ++L+DMYC
Sbjct: 231 HLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYC 290

Query: 318 KCGSLEDAMSVF---SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           KCG LE A SVF   S + +    +WSTM++G  QNG  +EAL LF  M    +  +  T
Sbjct: 291 KCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFT 350

Query: 375 IVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
           +  V  AC++ G VE G   H    K +Y +D      S ++D+  + G L++A + I +
Sbjct: 351 LTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLA--SAIVDMYAKCGNLEDA-RSIFD 407

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAI 460
                +   W ++L +   H    +AI
Sbjct: 408 RACTKNIAVWTSMLCSYASHGQGRIAI 434



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 7/194 (3%)

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
           R++++  + +     +A  VF+E PTR   VW   I G A+     + +  +  M   G 
Sbjct: 48  RASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGE 107

Query: 270 AADQS-TLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAM 326
           A   +  L +V+R C G+  +E G +VH  +L+     D++L NA+LDMY KCG  E A 
Sbjct: 108 ATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERAR 167

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            VF  M ++D +SW+  I    Q+G    +++LF+   + R   ++ TI+  L    HA 
Sbjct: 168 RVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPL-RDTTSWNTIISGLMRSGHAA 226

Query: 387 FVEDGWNHFKSMKK 400
              D  +H + M +
Sbjct: 227 ---DALSHLRRMAQ 237


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/540 (42%), Positives = 333/540 (61%), Gaps = 7/540 (1%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           EP++   NI+L  +++   ++ A   F++MP +++ SW T+IS +       KA +L   
Sbjct: 133 EPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSV 192

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           M  +    N  ++SA++        L         VG +S V V +A++  Y K G++  
Sbjct: 193 MPEK----NGVSWSAMISGYVEHGDLEAAEELYKNVGMKS-VVVETAMLTGYMKFGKVEL 247

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           AE +F  M  ++LV WNS+I G+ +N   ++ L ++K M  +    +  +L+SVL  C+ 
Sbjct: 248 AERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSN 307

Query: 286 LALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L+ L LG Q+H  V K     D     +L+ MYCKCG L+ A  +F  M +KDVI+W+ M
Sbjct: 308 LSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAM 367

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           ISG AQ+G  ++AL LF+ M+   +KP++IT V V+ AC+HAGFV+ G  +FKSMKK +G
Sbjct: 368 ISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFG 427

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           I+    HY+C+IDLLGRAG+L EAV LI EMP+ P A  +  LLGAC++H+N DLA  AA
Sbjct: 428 IEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAA 487

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
           + +LNLDP     Y+ L+NIYA + KWD+VA+VRK M+   + K PG SWIE+    H F
Sbjct: 488 RNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEF 547

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
             +D  HP++  I+K L  L  K+   GY PD  + L D+E E KE  + +HSEKLAI F
Sbjct: 548 RSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAF 607

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GLM    G  IR+ KNLR+CGDCH   K  + +E + I++RD  R+HHF++G CSCGDYW
Sbjct: 608 GLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 109/256 (42%), Gaps = 36/256 (14%)

Query: 29  VASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARH 88
           +A  N +T NS  ++  +   C   D    +K    M    VR + ++ + ++  C    
Sbjct: 255 MAVKNLVTWNS--MIAGYVENCRAED---GLKVFKTMIESRVRPNPLSLSSVLLGCSNLS 309

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           A+   + +H  V       +T     L++M+ K   L+ A  LF +MP ++V++W  MIS
Sbjct: 310 ALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMIS 369

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGII--------- 199
            Y       KAL L   M    ++P+  T+ AV+ AC+        H G +         
Sbjct: 370 GYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACN--------HAGFVDLGVQYFKS 421

Query: 200 ---KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP-TRDLVVWNSIIGGFAQNSDVD 255
              + G E+     + +ID+  + G L  A  +  EMP T    ++ +++G         
Sbjct: 422 MKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLG--------- 472

Query: 256 EALNLYKRMKRAGFAA 271
            A  ++K +  A FAA
Sbjct: 473 -ACRIHKNLDLAEFAA 487



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 125/317 (39%), Gaps = 69/317 (21%)

Query: 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ-NSDVDEA 257
           + V   SDV   +  I  + +  +L +A  VF +M  R  V WN+++ G+ +    V EA
Sbjct: 65  LHVDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEA 124

Query: 258 LNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYC 317
             L+ ++      +    L   LR+    A L    ++ V       D+   N L+  + 
Sbjct: 125 HELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPV------KDIASWNTLISGFA 178

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           + G ++ A  +FS M +K+ +SWS MISG  ++G  + A +L++++ +  +      + G
Sbjct: 179 QNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTG 238

Query: 378 ----------------------VLFACSHAGFV-----EDGWNHFKSM------------ 398
                                 V +    AG+V     EDG   FK+M            
Sbjct: 239 YMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSL 298

Query: 399 -------KKFYGIDPGREHY---------------SCMIDLLGRAGKLQEAVKLIHEMPY 436
                       +  GR+ +               + +I +  + G L  A KL  EMP 
Sbjct: 299 SSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPR 358

Query: 437 EPDAVTWRALLGACKVH 453
           + D +TW A++     H
Sbjct: 359 K-DVITWNAMISGYAQH 374



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 77/158 (48%), Gaps = 15/158 (9%)

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ-NGYSQEALKLFESM 363
           D++  N  +  + +   LE A +VF +M  +  ++W+TM+SG  +  G  +EA +LF+ +
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE--HYSCMIDLLGRA 421
                +P+ ++   ++  C    +        K+   F+   P ++   ++ +I    + 
Sbjct: 132 P----EPDSVS-YNIMLVCYLRSY------GVKAALAFFNKMPVKDIASWNTLISGFAQN 180

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
           G++Q+A  L   MP E + V+W A++     H + + A
Sbjct: 181 GQMQKAFDLFSVMP-EKNGVSWSAMISGYVEHGDLEAA 217


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/591 (39%), Positives = 366/591 (61%), Gaps = 30/591 (5%)

Query: 75  VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV-----------------NILLN 117
           V  +++ + C+   + E   LV  + L GGF  +  +V                 N ++ 
Sbjct: 199 VQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIIT 258

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            + +   ++EA+ LFD+ P ++V +WT M+S Y   +M ++A EL   M       N  +
Sbjct: 259 GYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER----NEVS 314

Query: 178 YSAVLRA---CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           ++A+L      + + + ++L      V    +V   + +I  YA+ G++  A+ +F++MP
Sbjct: 315 WNAMLAGYVQGERMEMAKEL----FDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP 370

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD V W ++I G++Q+    EAL L+ +M+R G   ++S+ +S L  C  +  LELG Q
Sbjct: 371 KRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQ 430

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  ++K  Y+    + NALL MYCKCGS+E+A  +F  M  KD++SW+TMI+G +++G+
Sbjct: 431 LHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGF 490

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            + AL+ FESMK   +KP+  T+V VL ACSH G V+ G  +F +M + YG+ P  +HY+
Sbjct: 491 GEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYA 550

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           CM+DLLGRAG L++A  L+  MP+EPDA  W  LLGA +VH NT+LA  AA KI  ++P+
Sbjct: 551 CMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPE 610

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           + G Y+LLSN+YA+S +W +V ++R  MR +G+ K PG SWIE+  + H F+V D  HP+
Sbjct: 611 NSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPE 670

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
            D+I   L+ L  ++   GY   T+ VL D+E E+KE  ++YHSE+LA+ +G+M ++ G+
Sbjct: 671 KDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGR 730

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            IR+ KNLR+C DCH   K  A++  + I++RD  R+HHF+DG+CSCGDYW
Sbjct: 731 PIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 155/339 (45%), Gaps = 56/339 (16%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N +++ +++    E A+ LFD+MPER++VSW  MI  Y   +   KA EL   M      
Sbjct: 99  NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIM------ 152

Query: 173 PNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           P                              E DV   + ++  YA+ G + +A  VF+ 
Sbjct: 153 P------------------------------ERDVCSWNTMLSGYAQNGCVDDARSVFDR 182

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           MP ++ V WN+++  + QNS ++EA  L+K  +     +    L   ++    +   +  
Sbjct: 183 MPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFF 242

Query: 293 TQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
             ++V       D++  N ++  Y + G +++A  +F     +DV +W+ M+SG  QN  
Sbjct: 243 DSMNV------RDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRM 296

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR--EH 410
            +EA +LF+ M     + N ++   +L     AG+V+      +  K+ + + P R    
Sbjct: 297 VEEARELFDKMP----ERNEVSWNAML-----AGYVQG--ERMEMAKELFDVMPCRNVST 345

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           ++ MI    + GK+ EA  L  +MP + D V+W A++  
Sbjct: 346 WNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 383



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 21/202 (10%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+  G R +  +++  +  C    A+E  K +H  ++ GG+E   F+ N LL 
Sbjct: 393 ALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLL 452

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +EEA  LF +M  +++VSW TMI+ Y      + AL     M REG++P+  T
Sbjct: 453 MYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDAT 512

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFE------SDVFV------RSALIDIYAKLGELRN 225
             AVL AC         H G++  G +       D  V       + ++D+  + G L +
Sbjct: 513 MVAVLSACS--------HTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLED 564

Query: 226 AECVFNEMPTR-DLVVWNSIIG 246
           A  +   MP   D  +W +++G
Sbjct: 565 AHNLMKNMPFEPDAAIWGTLLG 586


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/654 (38%), Positives = 383/654 (58%), Gaps = 48/654 (7%)

Query: 19  RQFSLTITPPVASCNTITRNSSSLLDDFTRFCY---QRDLPRAMKAMHAMQCHGVRADSV 75
           R F L     V S N       SLL  + +  Y    R++   M   +++  +G+ A  V
Sbjct: 132 RLFDLMPEKDVVSWN-------SLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYV 184

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL-----------------VNILLNM 118
               + + CL   +  +  L+  + L GGF  +  L                  N +++ 
Sbjct: 185 HNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISG 244

Query: 119 HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTY 178
           + +   L +A+ LFD+ P R+V +WT M+S Y    M D+A      M  +    N  +Y
Sbjct: 245 YAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSY 300

Query: 179 SAVLRA---CDSLIILRQLHCGIIKVGFES----DVFVRSALIDIYAKLGELRNAECVFN 231
           +A++        + I R+L        FES    ++   + +I  Y ++G++  A   F+
Sbjct: 301 NAMIAGYVQTKKMDIAREL--------FESMPCRNISSWNTMITGYGQIGDIAQARKFFD 352

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
            MP RD V W +II G+AQ+   +EALN++  +K+ G + +++T    L  C  +A LEL
Sbjct: 353 MMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALEL 412

Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G Q+H   +K  Y     + NALL MY KCGS+++A   F  + +KDV+SW+TM++G A+
Sbjct: 413 GKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYAR 472

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           +G+ ++AL +FESMK + +KP+ IT+VGVL ACSH G ++ G  +F SM K YG+ P  +
Sbjct: 473 HGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSK 532

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
           HY+CMIDLLGRAG+L+EA  LI  MP++P A +W ALLGA ++H NT+L   AA+ +  +
Sbjct: 533 HYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKM 592

Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
           +PQ+ G Y+LLSN+YA S +W +  ++R  MR  G+ K PG SW+EV  +IH F+V D S
Sbjct: 593 EPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCS 652

Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
           HP+ ++I  +L+ L  K+   GY   T  VL D+E E+KE  ++YHSEKLA+ FG++++ 
Sbjct: 653 HPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIP 712

Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            G+ IR+ KNLR+C DCH+  K  +K+  + I++RD  R+HHF +G CSCGDYW
Sbjct: 713 GGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 177/414 (42%), Gaps = 48/414 (11%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R  SV+Y  +I   L       A+ + + +     E + F  N++L  +V+   L +A+ 
Sbjct: 77  RRSSVSYNAMISGYLRNSKFNLARNLFDQMP----ERDLFSWNVMLTGYVRNCRLGDARR 132

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA------ 184
           LFD MPE++VVSW +++S Y      D+A E+   M  +    N  +++ +L A      
Sbjct: 133 LFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEK----NSISWNGLLAAYVHNGR 188

Query: 185 --------------------CDSLIILRQLHCGIIKVGFES----DVFVRSALIDIYAKL 220
                               C     +R+   G  +  F+     D    + +I  YA+ 
Sbjct: 189 IEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQG 248

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           G L  A  +F+E PTRD+  W +++ G+ QN  +DEA   +  M      +  + +   +
Sbjct: 249 GGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYV 308

Query: 281 RACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           +        EL   +         ++   N ++  Y + G +  A   F  M Q+D +SW
Sbjct: 309 QTKKMDIARELFESMPC------RNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSW 362

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMK 399
           + +I+G AQ+G+ +EAL +F  +K      N  T    L  C+    +E G   H +++K
Sbjct: 363 AAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVK 422

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             YG   G    + ++ +  + G + EA      +  E D V+W  +L     H
Sbjct: 423 MGYGT--GCFVGNALLAMYFKCGSIDEANDTFEGIE-EKDVVSWNTMLAGYARH 473



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 185/436 (42%), Gaps = 82/436 (18%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC-DAKMNDKALELLI 164
           +P+    N  ++ H++    + A  +F+ MP R+ VS+  MIS Y  ++K N        
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFN-------- 97

Query: 165 FMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
                 +  N+F                           E D+F  + ++  Y +   L 
Sbjct: 98  ------LARNLFDQMP-----------------------ERDLFSWNVMLTGYVRNCRLG 128

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL---R 281
           +A  +F+ MP +D+V WNS++ G+AQN  VDEA  ++  M      +    L + +   R
Sbjct: 129 DARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGR 188

Query: 282 ACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
                 L E          K D DLI  N L+  + +   L DA  +F +M  +D ISW+
Sbjct: 189 IEEACLLFE---------SKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWN 239

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
           TMISG AQ G   +A +LF+    +R    +  +V        +G+V++G       K F
Sbjct: 240 TMISGYAQGGGLSQARRLFDE-SPTRDVFTWTAMV--------SGYVQNG--MLDEAKTF 288

Query: 402 YGIDPGREH--YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL-GACKVHRNTDL 458
           +   P +    Y+ MI    +  K+  A +L   MP   +  +W  ++ G  ++      
Sbjct: 289 FDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCR-NISSWNTMITGYGQIG----- 342

Query: 459 AICAAKKILNLDPQ-DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEP---GCSW- 513
            I  A+K  ++ PQ D  ++  +   YA S  ++E   +   ++  G +      GC+  
Sbjct: 343 DIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALS 402

Query: 514 -------IEVNKQIHA 522
                  +E+ KQIH 
Sbjct: 403 TCADIAALELGKQIHG 418


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/538 (41%), Positives = 331/538 (61%), Gaps = 38/538 (7%)

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           + F    +++ + +  +LEEA+ +FD MPERN VSW  M++AY   +M D+A EL   M 
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMM- 312

Query: 168 REGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
                            C ++     +  G                   YA+ G L  A+
Sbjct: 313 ----------------PCRNVASWNTMLTG-------------------YAQAGMLEEAK 337

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            VF+ MP +D V W +++  ++Q    +E L L+  M R G   ++S    VL  C  +A
Sbjct: 338 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIA 397

Query: 288 LLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
            LE G Q+H  +++  Y     + NALL MY KCG++EDA + F  M ++DV+SW+TMI+
Sbjct: 398 ALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIA 457

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           G A++G+ +EAL++F+ M+ +  KP+ IT+VGVL ACSH+G VE G ++F SM   +G+ 
Sbjct: 458 GYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVT 517

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
              EHY+CMIDLLGRAG+L EA  L+ +MP+EPD+  W ALLGA ++HRN +L   AA+K
Sbjct: 518 AKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEK 577

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
           I  L+P++ G Y+LLSNIYA+S KW +  ++R  M  RG+ K PG SWIEV  ++H F+ 
Sbjct: 578 IFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSA 637

Query: 526 ADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGL 585
            D  HP+ +KI   L+ L  ++   GY   T+ VL D+E E+KE  ++YHSEKLA+ +G+
Sbjct: 638 GDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGI 697

Query: 586 MSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +++  G+ IR+ KNLR+CGDCH   K  + +E + I++RD  R+HHF+ G+CSCGDYW
Sbjct: 698 LNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 120/484 (24%), Positives = 206/484 (42%), Gaps = 76/484 (15%)

Query: 16  SQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSV 75
           S ARQ S    PP A+ +  + +SS  L+           P  +++  A+  H +RA  V
Sbjct: 9   SAARQRSHR--PPPAAGDASSSSSSGRLE-----------PEVIRSNKAITAH-MRAGRV 54

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGF----------------EPETFLVNILLNMH 119
             AE +   + R +       +N +L+G                   P+ +  N LL+  
Sbjct: 55  ADAERLFAAMPRRSTS----TYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHAL 110

Query: 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
              S L +A+ LFD+MP R+ V++  MIS++     N   + L           +  +++
Sbjct: 111 AVSSSLADARGLFDEMPVRDSVTYNVMISSHA----NHGLVSLARHYFDLAPEKDAVSWN 166

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
            +L A      + +   G+     E DV   +AL+  Y + G++  A  +F+ MP RD+V
Sbjct: 167 GMLAAYVRNGRVEEAR-GLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVV 225

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV---- 295
            WN ++ G+A+  D+ EA  L+     A    D  T T+V+       +LE   +V    
Sbjct: 226 SWNIMVSGYARRGDMVEARRLFD----AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM 281

Query: 296 --------HVHVLKYDHDLILN-----------------NALLDMYCKCGSLEDAMSVFS 330
                   +  V  Y    +++                 N +L  Y + G LE+A +VF 
Sbjct: 282 PERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD 341

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            M QKD +SW+ M++  +Q G S+E L+LF  M       N      VL  C+    +E 
Sbjct: 342 TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALEC 401

Query: 391 GWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           G   H + ++  YG+  G    + ++ +  + G +++A     EM  E D V+W  ++  
Sbjct: 402 GMQLHGRLIRAGYGV--GCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAG 458

Query: 450 CKVH 453
              H
Sbjct: 459 YARH 462



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 21/184 (11%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
            +A ++  C    A+E    +H  ++  G+    F+ N LL M+ K   +E+A+  F++M
Sbjct: 385 AFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEM 444

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLH 195
            ER+VVSW TMI+ Y       +ALE+   M     +P+  T   VL AC         H
Sbjct: 445 EERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACS--------H 496

Query: 196 CGIIKVGFE------SDVFVRSA------LIDIYAKLGELRNAECVFNEMPTR-DLVVWN 242
            G+++ G         D  V +       +ID+  + G L  A  +  +MP   D  +W 
Sbjct: 497 SGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWG 556

Query: 243 SIIG 246
           +++G
Sbjct: 557 ALLG 560


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/538 (41%), Positives = 331/538 (61%), Gaps = 38/538 (7%)

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           + F    +++ + +  +LEEA+ +FD MPERN VSW  M++AY   +M D+A EL   M 
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMM- 312

Query: 168 REGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
                            C ++     +  G                   YA+ G L  A+
Sbjct: 313 ----------------PCRNVASWNTMLTG-------------------YAQAGMLEEAK 337

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            VF+ MP +D V W +++  ++Q    +E L L+  M R G   ++S    VL  C  +A
Sbjct: 338 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIA 397

Query: 288 LLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
            LE G Q+H  +++  Y     + NALL MY KCG++EDA + F  M ++DV+SW+TMI+
Sbjct: 398 ALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIA 457

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           G A++G+ +EAL++F+ M+ +  KP+ IT+VGVL ACSH+G VE G ++F SM   +G+ 
Sbjct: 458 GYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVT 517

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
              EHY+CMIDLLGRAG+L EA  L+ +MP+EPD+  W ALLGA ++HRN +L   AA+K
Sbjct: 518 AKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEK 577

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
           I  L+P++ G Y+LLSNIYA+S KW +  ++R  M  RG+ K PG SWIEV  ++H F+ 
Sbjct: 578 IFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSA 637

Query: 526 ADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGL 585
            D  HP+ +KI   L+ L  ++   GY   T+ VL D+E E+KE  ++YHSEKLA+ +G+
Sbjct: 638 GDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGI 697

Query: 586 MSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +++  G+ IR+ KNLR+CGDCH   K  + +E + I++RD  R+HHF+ G+CSCGDYW
Sbjct: 698 LNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 119/484 (24%), Positives = 205/484 (42%), Gaps = 76/484 (15%)

Query: 16  SQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSV 75
           S ARQ S    PP A+ +  + +SS  L+           P  +++  A+  H +RA  V
Sbjct: 9   SAARQRSHR--PPPAAGDASSSSSSGRLE-----------PEVIRSNKAITAH-MRAGRV 54

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGF----------------EPETFLVNILLNMH 119
             AE +   + R +       +N +L+G                   P+ +  N LL+  
Sbjct: 55  ADAERLFAAMPRRSTS----TYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHAL 110

Query: 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
              S L +A+ LFD+MP R+ V++  MIS++     N   + L           +  +++
Sbjct: 111 AVSSSLADARGLFDEMPVRDSVTYNVMISSHA----NHGLVSLARHYFDLAPEKDAVSWN 166

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
            +L A      + +   G+     E D    +AL+  Y + G++  A  +F+ MP RD+V
Sbjct: 167 GMLAAYVRNGRVEEAR-GLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVV 225

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV---- 295
            WN ++ G+A+  D+ EA  L+     A    D  T T+V+       +LE   +V    
Sbjct: 226 SWNIMVSGYARRGDMVEARRLFD----AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM 281

Query: 296 --------HVHVLKYDHDLILN-----------------NALLDMYCKCGSLEDAMSVFS 330
                   +  V  Y    +++                 N +L  Y + G LE+A +VF 
Sbjct: 282 PERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD 341

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            M QKD +SW+ M++  +Q G S+E L+LF  M       N      VL  C+    +E 
Sbjct: 342 TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALEC 401

Query: 391 GWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           G   H + ++  YG+  G    + ++ +  + G +++A     EM  E D V+W  ++  
Sbjct: 402 GMQLHGRLIRAGYGV--GCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAG 458

Query: 450 CKVH 453
              H
Sbjct: 459 YARH 462



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 21/184 (11%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
            +A ++  C    A+E    +H  ++  G+    F+ N LL M+ K   +E+A+  F++M
Sbjct: 385 AFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEM 444

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLH 195
            ER+VVSW TMI+ Y       +ALE+   M     +P+  T   VL AC         H
Sbjct: 445 EERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACS--------H 496

Query: 196 CGIIKVGFE------SDVFVRSA------LIDIYAKLGELRNAECVFNEMPTR-DLVVWN 242
            G+++ G         D  V +       +ID+  + G L  A  +  +MP   D  +W 
Sbjct: 497 SGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWG 556

Query: 243 SIIG 246
           +++G
Sbjct: 557 ALLG 560


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/651 (37%), Positives = 378/651 (58%), Gaps = 21/651 (3%)

Query: 1   MILKAVSKLKWTKPSSQARQ-FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRD--LPR 57
           +I K V+K       S AR+ F     P V   N I R            CY R      
Sbjct: 109 LIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVR------------CYSRHGFFGH 156

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    MQ   V  D  ++  ++K C A  A+E  + VH  +   GFE + F+ N L+ 
Sbjct: 157 AIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVA 216

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++ K   +  A  +F ++ +R +VSWT++IS Y       +AL +   M +  VRP+   
Sbjct: 217 LYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIA 276

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             +VLRA   +  L   + +H  +IK+G E +  +  +L  +YAK G +  A   FN++ 
Sbjct: 277 LVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVE 336

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
              L+ WN++I G+ +N   +EA+ L++ MK      D  T+TS + AC  +  LEL   
Sbjct: 337 NPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARW 396

Query: 295 V--HVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +  ++ + ++ +D+I+N +L+D Y KCGS++ A  VF R+  KDV+ WS M+ G   +G 
Sbjct: 397 MDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQ 456

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            +E++ LF +M+ + + PN +T VG+L AC ++G VE+GW+ F  M+  YGI+P  +HY+
Sbjct: 457 GRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRD-YGIEPRHQHYA 515

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           C++DLLGRAG L  A   +  MP EP    W ALL ACK+HR+  L   AA+++ +LDP 
Sbjct: 516 CVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPY 575

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           + G Y+ LSN+YA+S  WD VA+VR  MR +G+TK  G S IE+N ++ AF   D +HP+
Sbjct: 576 NTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPR 635

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
             +I + ++ L ++L   G+ P T  VL DL  E+ E+++  HSE+LAI +GL+S   G 
Sbjct: 636 SKEIFEEVEDLERRLKEAGFVPHTESVLHDLNYEETEETLCNHSERLAIAYGLISTPPGT 695

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           T+RI KNLR C +CH   KL +K+ ++ IV+RD  R+HHF+DG CSCGDYW
Sbjct: 696 TLRITKNLRACDNCHAAIKLISKLVSREIVVRDACRFHHFKDGACSCGDYW 746



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 167/323 (51%), Gaps = 36/323 (11%)

Query: 172 RPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
           +P+ F Y++++        L Q++  ++  G +   F+ + L++  + +GE+  A  +F+
Sbjct: 73  KPDKF-YASLIDDSIHKTHLNQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFD 131

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           + P  D+ +WN+I+  ++++     A+ +Y RM+ A  + D  +   VL+AC+ L  LE+
Sbjct: 132 KFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEM 191

Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G +VH  + +  ++ D+ + N L+ +Y KCG +  A +VF R++ + ++SW+++ISG AQ
Sbjct: 192 GRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQ 251

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG---------------WNH 394
           NG   EAL++F  M+ + ++P++I +V VL A +    +E G               ++ 
Sbjct: 252 NGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDL 311

Query: 395 FKSMKKFYGI---------------DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE-- 437
             S+   Y                 +P    ++ MI    + G  +EA++L   M  +  
Sbjct: 312 LISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNI 371

Query: 438 -PDAVTWRALLGACKVHRNTDLA 459
            PD++T  + + AC    + +LA
Sbjct: 372 RPDSITVTSSIAACAQIGSLELA 394


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/625 (37%), Positives = 365/625 (58%), Gaps = 38/625 (6%)

Query: 57  RAMKAMHAMQCHG--VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           RA++  H +   G  VR   +T + ++    A       +  H  +L  GF    F+ + 
Sbjct: 121 RAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSP 180

Query: 115 LLNMHVKFSLL-------------------------------EEAQVLFDQMPERNVVSW 143
           L+ M+ K  L+                               EEA+ LF+ M +R+ ++W
Sbjct: 181 LVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITW 240

Query: 144 TTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIK 200
           TTM++ +    +  +AL     M  +G+  + +T+ ++L AC +L  L   +Q+H  II+
Sbjct: 241 TTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIR 300

Query: 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNL 260
             ++ +VFV SAL+D+Y+K   ++ AE  F  M  ++++ W ++I G+ QN   +EA+ +
Sbjct: 301 THYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRV 360

Query: 261 YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCK 318
           +  M+R G   D  TL SV+ +C  LA LE G Q H   L     H + ++NAL+ +Y K
Sbjct: 361 FSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGK 420

Query: 319 CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
           CGS+EDA  +F  M+  D +SW+ +++G AQ G ++E + LFE M    +KP+ +T +GV
Sbjct: 421 CGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGV 480

Query: 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP 438
           L ACS AGFVE G ++F SM+K +GI P  +HY+CMIDL  R+G+L+EA + I +MP  P
Sbjct: 481 LSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHP 540

Query: 439 DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRK 498
           DA+ W  LL AC++  + ++   AA+ +L +DPQ+P +Y+LL +++A    W++VA++R+
Sbjct: 541 DAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRR 600

Query: 499 TMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNY 558
            MR R + KEPGCSWI+   ++H F+  D SHP    I + L+ L  K++  GY PD + 
Sbjct: 601 GMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSS 660

Query: 559 VLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMEN 618
           VL D+    K   + +HSEKLAI FGLM +     IRI KNLR+C DCH   KL +K+  
Sbjct: 661 VLHDVADTDKVHMVSHHSEKLAIAFGLMFVPHEMPIRIVKNLRVCVDCHNATKLISKITG 720

Query: 619 QTIVIRDPIRYHHFQDGNCSCGDYW 643
           + I++RD +R+H F +G CSCGD+W
Sbjct: 721 RDILVRDAVRFHKFSNGVCSCGDFW 745



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/383 (32%), Positives = 207/383 (54%), Gaps = 48/383 (12%)

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
           P  F  N LL+      LL++   LF  M +R+ VS+  +I+ +     + +A+ L   +
Sbjct: 70  PNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTL 129

Query: 167 LREG--VRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
           LR G  VRP+  T SA++ A  +L    + RQ HC I+++GF  + FV S L+ +YAK+G
Sbjct: 130 LRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMG 189

Query: 222 ELRNAECVFNE-------------------------------MPTRDLVVWNSIIGGFAQ 250
            + +A+ VF+E                               M  RD + W +++ GF Q
Sbjct: 190 LIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQ 249

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
           N    +ALN ++RM+  G A DQ T  S+L AC  L+ LE G Q+H ++++  YD ++ +
Sbjct: 250 NGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFV 309

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            +AL+DMY KC S++ A + F RM  K++ISW+ +I G  QNG S+EA+++F  M+   I
Sbjct: 310 GSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGI 369

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY----SCMIDLLGRAGKL 424
            P+  T+  V+ +C++   +E+G   F  +    G+     HY    + ++ L G+ G +
Sbjct: 370 DPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGL----MHYITVSNALVTLYGKCGSI 424

Query: 425 QEAVKLIHEMPYEPDAVTWRALL 447
           ++A +L  EM +  D V+W AL+
Sbjct: 425 EDAHRLFDEMLFH-DQVSWTALV 446



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 119/275 (43%), Gaps = 42/275 (15%)

Query: 194 LHCGIIK-VGFESDVFVRSALIDIYAKLGELRNAECVFNEMP------------------ 234
           LHC I++ +       + + L+  Y K G    A  VF+  P                  
Sbjct: 27  LHCVILRTLPHPPPTHLLNHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHAR 86

Query: 235 -------------TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS--TLTSV 279
                         RD V +N++I GF+       A+ LY  + RAG +   S  T++++
Sbjct: 87  LLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAM 146

Query: 280 LRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
           + A + L    LG Q H  +L+  +  +  + + L+ MY K G + DA  VF  M  K+V
Sbjct: 147 VMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNV 206

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           + ++TMI+GL +    +EA +LFE M       + IT   ++   +  G      N F+ 
Sbjct: 207 VMYNTMITGLLRCKMVEEARRLFEVM----TDRDCITWTTMVTGFTQNGLESQALNFFRR 262

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           M +F GI   +  +  ++   G    L++  K IH
Sbjct: 263 M-RFQGIAIDQYTFGSILTACGALSALEQG-KQIH 295


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/543 (42%), Positives = 344/543 (63%), Gaps = 13/543 (2%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           EP+    N +L+ +V+ S +E AQ  F+ MP ++  SW TMI+ +   +  DKA +L + 
Sbjct: 35  EPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLI 94

Query: 166 MLREGVRPNMFTYSAVLRA---CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           M  +    N+ T++A++     C  L    +L     K  F+S V   +A+I  Y KLG 
Sbjct: 95  MPTK----NVVTWNAMISGYVECGDLDSALKL---FEKAPFKS-VVAWTAMITGYMKLGR 146

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           +  AE +F +MP ++LV WN++I G+ +N   ++ + L++ M   G   + STL+S L  
Sbjct: 147 IGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLG 206

Query: 283 CTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           C+ L+ L+LG QVH  V K     D     +L+ MYCKCG LED   +F ++ ++DV++W
Sbjct: 207 CSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTW 266

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           + MISG AQ+G  ++AL LF+ M    +KP++IT V VL AC+HAGF + G  +F SM K
Sbjct: 267 NAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAK 326

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            YG+    +HY+CM+DLLGRAGKL EAV LI +MP++P A  +  LLGAC++H+NT++A 
Sbjct: 327 DYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAE 386

Query: 461 CAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQI 520
            A++K+LNLDP     Y+ L+N+YA +++WD VA VRK+M++  + K PG SWIEV    
Sbjct: 387 FASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMA 446

Query: 521 HAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLA 580
           H F   D  HP++  I+  LK L +K+   GY PD  + L D+  EQKE  + +HSEKLA
Sbjct: 447 HQFRSGDKFHPELASIHGKLKELEKKMKLAGYVPDLEFALHDVGEEQKEQLLLWHSEKLA 506

Query: 581 IVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
           I +GL+ L  G  IR+ KNLR+CGDCH   K  +++E + I++RD  R+HHF+DG+CSC 
Sbjct: 507 IAYGLIKLPPGTPIRVFKNLRVCGDCHRAIKYISQIERREIIVRDTTRFHHFKDGHCSCA 566

Query: 641 DYW 643
           DYW
Sbjct: 567 DYW 569



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 115/252 (45%), Gaps = 19/252 (7%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            +K    M   G++ +S T +  +  C    A++  + VH  V       +T     L++
Sbjct: 181 GVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLIS 240

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K  +LE+   LF Q+P R+VV+W  MIS Y       KAL L   M+ +G++P+  T
Sbjct: 241 MYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWIT 300

Query: 178 YSAVLRACD----SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           + AVL AC+    + + ++  H      G  +     + ++D+  + G+L  A  +  +M
Sbjct: 301 FVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKM 360

Query: 234 PTRD-LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           P +    V+ +++G          A  ++K  + A FA+ Q  L     + TG   L   
Sbjct: 361 PFKPHAAVFGTLLG----------ACRIHKNTEMAEFAS-QKLLNLDPASATGYVQL--- 406

Query: 293 TQVHVHVLKYDH 304
             V+    ++DH
Sbjct: 407 ANVYAATKRWDH 418



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 133/329 (40%), Gaps = 84/329 (25%)

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV----------------------- 239
            ++ V   S L  +  K G+L+ A+ +F ++P  D V                       
Sbjct: 3   LKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFE 62

Query: 240 --------VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
                    WN++I GFAQN  +D+A +L+  M         + ++  +      + L+L
Sbjct: 63  DMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKL 122

Query: 292 GTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
             +           ++   A++  Y K G +  A  +F +M +K++++W+ MI+G  +N 
Sbjct: 123 FEKAPF------KSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENH 176

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSH--------------------------- 384
            +++ +KLF +M    I+PN  T+   L  CS                            
Sbjct: 177 RAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGT 236

Query: 385 --------AGFVEDGWNHFKSMKKFYGIDPGRE--HYSCMIDLLGRAGKLQEAVKLIHEM 434
                    G +EDGW  F  +       P R+   ++ MI    + G+ ++A+ L  EM
Sbjct: 237 SLISMYCKCGVLEDGWKLFVQV-------PRRDVVTWNAMISGYAQHGEGKKALGLFDEM 289

Query: 435 ---PYEPDAVTWRALLGACKVHRNTDLAI 460
                +PD +T+ A+L AC     TDL +
Sbjct: 290 IEKGMKPDWITFVAVLMACNHAGFTDLGV 318



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 104/228 (45%), Gaps = 32/228 (14%)

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
           N+ L  M  K G L++A  +F ++ + D +S++TM+S   +N   + A   FE M + + 
Sbjct: 10  NSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPI-KD 68

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE--HYSCMIDLLGRAGKLQE 426
            P++ T++         GF ++        +  + I P +    ++ MI      G L  
Sbjct: 69  TPSWNTMI--------TGFAQN--QQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDS 118

Query: 427 AVKLIHEMPYEPDAVTWRALL-GACKVHRNTDLAICAAKKILNLDPQ-DPGTYILLSNIY 484
           A+KL  + P++   V W A++ G  K+ R     I  A+++    P+ +  T+  +   Y
Sbjct: 119 ALKLFEKAPFK-SVVAWTAMITGYMKLGR-----IGLAERLFEKMPEKNLVTWNAMIAGY 172

Query: 485 ANSQKWDEVAEVRKTMRARGITKEP--------GC---SWIEVNKQIH 521
             + + ++  ++ +TM   GI            GC   S +++ +Q+H
Sbjct: 173 IENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVH 220


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/641 (37%), Positives = 380/641 (59%), Gaps = 15/641 (2%)

Query: 14  PSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD 73
           P S  R  +  ++    S N  T  +S+        C Q +L +A+  +     H     
Sbjct: 13  PPSSPRYSTSKLSVSSFSFNPSTPPNSNNNHLIQSLCKQGNLKQALYLL----SHESNPT 68

Query: 74  SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFD 133
             T   LI     R+++ +A  VH  ++ GGF+ + FL   L+NM  +   ++ A+ +FD
Sbjct: 69  QQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFD 128

Query: 134 QMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL-- 191
           +  +R +  W  +  A   A   +  LEL   M   GV  + FTY+ +L+AC +   L  
Sbjct: 129 KTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVS 188

Query: 192 -----RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
                +++H  I++ G+ + V V + L+D+YA+ G +  A  VF+EMP +++V W+++I 
Sbjct: 189 FLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIA 248

Query: 247 GFAQNSDVDEALNLYKRM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
            +A+N    EAL L++ M         +  T+ SVL+AC   A LE G  +H ++L+   
Sbjct: 249 CYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGL 308

Query: 305 DLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           D IL   +AL+ MY +CG LE    +F RM +KDV+ W+++IS    +GY ++A+K+FE 
Sbjct: 309 DSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEE 368

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           M      P++I+ + VL ACSH G VE+G   F+SM K +GI P  EHY+CM+DLLGRA 
Sbjct: 369 MIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRAN 428

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
           +L EA K+I ++  EP    W +LLGAC++H + +LA  A+K++  L+P + G Y+LL++
Sbjct: 429 RLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLAD 488

Query: 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKH 542
           IYA ++ WDEV  V+K + +R + K PG SWIEV ++I++F   D  +PQ ++++  L +
Sbjct: 489 IYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVN 548

Query: 543 LIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
           L  ++   GY P T  VL DL+ E+KE  +  HSEKLA+ FGL++ ++G TIRI KNLR+
Sbjct: 549 LSNEMKQRGYTPQTKLVLYDLDQEEKERIVLGHSEKLAVAFGLINTSKGDTIRITKNLRL 608

Query: 603 CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           C DCH+  K  +K  ++ I++RD  R+HHF+DG CSCGDYW
Sbjct: 609 CEDCHSVTKFISKFADREIMVRDLNRFHHFKDGVCSCGDYW 649


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/594 (39%), Positives = 362/594 (60%), Gaps = 7/594 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           RA++ +  M+  G+  +  T + ++K C    A    + +H  ++    + + F+   L+
Sbjct: 289 RALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLV 348

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR--PN 174
           +M+ K   L++A+ +FD MP R+++ W  +IS       + + L L   M +EG+    N
Sbjct: 349 DMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVN 408

Query: 175 MFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
             T ++VL++    +++   RQ+H    K+G  SD  V + LID Y K G+L  A  VF 
Sbjct: 409 RTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFK 468

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           E  + D++   +++   +Q    ++A+ L+ +M R G   D   L+S+L ACT L+  E 
Sbjct: 469 ESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQ 528

Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G QVH H++K  +  D+   NAL+  Y KCGS+EDA   FS + ++ ++SWS MI GLAQ
Sbjct: 529 GKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQ 588

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           +G+ + AL LF  M    + PN+IT+  VL AC+HAG V+D   +F+SMK+ +GID   E
Sbjct: 589 HGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEE 648

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
           HY+CMID+LGRAGKL++A++L++ MP++ +A  W ALLGA +VHR+ +L   AA+K+  L
Sbjct: 649 HYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTL 708

Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
           +P+  GT++LL+N YA++  WDE+A+VRK M+   + KEP  SW+E+  ++H F V D S
Sbjct: 709 EPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKS 768

Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
           HP    I   L  L   +   GY P+    L D++  +KE  + +HSE+LA+ F L+S  
Sbjct: 769 HPMTRDIYGKLAELGDLMNKAGYVPNVEVDLHDVDRSEKELLLSHHSERLAVAFALISTP 828

Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            G  IR++KNLRIC DCH   K  +K+ ++ I+IRD  R+HHF +G CSCGDYW
Sbjct: 829 SGAPIRVKKNLRICRDCHVAFKYISKIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 145/455 (31%), Positives = 224/455 (49%), Gaps = 50/455 (10%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           SSL+  ++     RD   A+ A  AM+  GV  +      ++KC      V     VH  
Sbjct: 72  SSLVTAYSNNGMPRD---ALLAFRAMRGRGVPCNEFALPVVLKCA---PDVRFGAQVHAL 125

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM----PERNVVSWTTMISAYCDAKM 155
            ++     + F+ N L+ ++  F +++EA+ +FD+      ERN VSW TMISAY     
Sbjct: 126 AVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQ 185

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSA 212
           +  A+ +   M+  G RPN F +S V+ AC     L   RQ+H  +++ G+E DVF  +A
Sbjct: 186 SGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANA 245

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           L+D+Y+KLG++  A  VF +MP  D+V WN+ I G   +     AL L  +MK +G   +
Sbjct: 246 LVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPN 305

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
             TL+SVL+AC G     LG Q+H  ++K   D D  +   L+DMY K G L+DA  VF 
Sbjct: 306 VFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFD 365

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS--RIKPNYITIVGVLFACS----- 383
            M ++D+I W+ +ISG + +G   E L LF  M+     +  N  T+  VL + +     
Sbjct: 366 FMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAI 425

Query: 384 ------HA-----GFVEDGW-------NHFKSMKKFYGIDPGREHYS-------CMIDLL 418
                 HA     G + D         +++K  +  Y I   +E  S        M+  L
Sbjct: 426 CHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTAL 485

Query: 419 GRAGKLQEAVKLIHEM---PYEPDAVTWRALLGAC 450
            +    ++A+KL  +M     EPD+    +LL AC
Sbjct: 486 SQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNAC 520



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/382 (31%), Positives = 187/382 (48%), Gaps = 14/382 (3%)

Query: 79  ELIKCCLARHAVEEAKL----VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ 134
           E I   LAR     +      +H+H+L  G        N LL ++ +  L   A+ +FD+
Sbjct: 5   ETIGSALARFGTSRSLFAGAHLHSHLLKSGLLAG--FSNHLLTLYSRCRLPSAARAVFDE 62

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQL 194
           +P+   VSW+++++AY +  M   AL     M   GV  N F    VL+    +    Q+
Sbjct: 63  IPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPDVRFGAQV 122

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM----PTRDLVVWNSIIGGFAQ 250
           H   +      DVFV +AL+ +Y   G +  A  +F+E       R+ V WN++I  + +
Sbjct: 123 HALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVK 182

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
           N    +A+ +++ M  +G   ++   + V+ ACTG   LE G QVH  V++  Y+ D+  
Sbjct: 183 NDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFT 242

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            NAL+DMY K G +E A +VF +M   DV+SW+  ISG   +G+   AL+L   MK S +
Sbjct: 243 ANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGL 302

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
            PN  T+  VL AC+ AG    G      M K    D        ++D+  + G L +A 
Sbjct: 303 VPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVA-DFDEFVAVGLVDMYAKHGFLDDAR 361

Query: 429 KLIHEMPYEPDAVTWRALLGAC 450
           K+   MP   D + W AL+  C
Sbjct: 362 KVFDFMPRR-DLILWNALISGC 382


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/631 (39%), Positives = 372/631 (58%), Gaps = 41/631 (6%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           FC Q  L  A+  +H +     R     Y+ LI  CL    +E  K VH H  +  F P 
Sbjct: 42  FCQQNRLKEAVDYLHRIPQPSPR----LYSTLIAACLRHRKLELGKRVHAHTKASNFIPG 97

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALEL------ 162
             + N L++M+ K   L +AQ+LFD++P++++ SW TMIS Y +    ++A +L      
Sbjct: 98  IVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPH 157

Query: 163 ------------------------LIFMLREGVRPN--MFTYSAVLRACDSLIILR---Q 193
                                   L  M++E    N  MFT S+ L A  ++  LR   +
Sbjct: 158 RDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKE 217

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H  +I+ G E D  V +AL+D+Y K G L  A  +F++M  +D+V W ++I    ++  
Sbjct: 218 IHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGR 277

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNA 311
             E  +L++ +  +G   ++ T   VL AC  LA  ++G +VH ++ +  YD      +A
Sbjct: 278 KKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASA 337

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+ +Y KCG+ E A  VF++M + D++SW+++I G AQNG    AL+ FES+  S  KP+
Sbjct: 338 LVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPD 397

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            IT VGVL AC+HAG V+ G  +F S+K+ +G+    +HY+C+IDLL R+G+ +EA  +I
Sbjct: 398 EITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENII 457

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
             MP +PD   W +LLG C++H N +LA  AAK +  L+P++P TYI LSNIYAN+  W 
Sbjct: 458 DNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANAGLWT 517

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
           E  +VR  M  RGI K+PG SWIE+ +Q+H F V D+SHP+I  I+++L  L +K+   G
Sbjct: 518 EETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEG 577

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           Y  DTN+VL D+E EQKE +I YHSEKLA+ FG++S + G  I++ KNLR C DCH   K
Sbjct: 578 YVADTNFVLHDVEEEQKEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRTCVDCHNAMK 637

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
             +K+  + I++RD  R+H F DG+CSC DY
Sbjct: 638 YISKIVQRKIIVRDSNRFHCFVDGSCSCKDY 668


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 238/597 (39%), Positives = 368/597 (61%), Gaps = 14/597 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+  +  M+  G++ + VT   ++  C     +  A L+H +V+  G E + F+ N L+
Sbjct: 299 QALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALI 358

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           NM+ KF  LE+A+  F QM   +VVSW ++I+AY        A    + M   G +P++ 
Sbjct: 359 NMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLL 418

Query: 177 TYSAVL------RACDSLIILRQLHCGIIKVGF-ESDVFVRSALIDIYAKLGELRNAECV 229
           T  ++       R C +    R +H  I++ G+   DV + +A++D+YAKLG L +A  V
Sbjct: 419 TLVSLASIVAQSRDCKNS---RSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKV 475

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG-FAADQSTLTSVLRACTGLAL 288
           F  +P +D++ WN++I G+AQN    EA+ +YK M+       +Q T  S+L A   +  
Sbjct: 476 FEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGA 535

Query: 289 LELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           L+ G ++H  V+K +   D+ +   L+D+Y KCG L DAMS+F ++ Q+  ++W+ +IS 
Sbjct: 536 LQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISC 595

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
              +G++++ LKLF  M    +KP+++T V +L ACSH+GFVE+G   F+ M++ YGI P
Sbjct: 596 HGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKP 654

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
             +HY CM+DLLGRAG L+ A   I +MP +PDA  W ALLGAC++H N +L   A+ ++
Sbjct: 655 SLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRL 714

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
             +D ++ G Y+LLSNIYAN  KW+ V +VR   R RG+ K PG S IEVN+++  F   
Sbjct: 715 FEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTG 774

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           + SHP+  +I + L+ L  K+  +GY PD ++VLQD+E ++KE  +  HSE+LAI FG++
Sbjct: 775 NQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGII 834

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           S      IRI KNLR+CGDCH   K  +++  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 835 STPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 143/455 (31%), Positives = 239/455 (52%), Gaps = 20/455 (4%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           +R D  T+  ++K C     + + + +H      GF+   F+   L++M+ +F     A+
Sbjct: 214 IRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIAR 270

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            LFD MP R++ SW  MIS         +AL++L  M  EG++ N  T  ++L  C  L 
Sbjct: 271 SLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLG 330

Query: 190 ILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            +     +H  +IK G E D+FV +ALI++YAK G L +A   F +M   D+V WNSII 
Sbjct: 331 DISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIA 390

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--- 303
            + QN D   A   + +M+  GF  D  TL S+          +    VH  +++     
Sbjct: 391 AYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLM 450

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D+++ NA++DMY K G L+ A  VF  +  KDVISW+T+I+G AQNG + EA+++++ M
Sbjct: 451 EDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMM 510

Query: 364 -KVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            +   I PN  T V +L A +H G ++ G   H + +K    +D      +C+ID+ G+ 
Sbjct: 511 EECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVA--TCLIDVYGKC 568

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN--LDPQDPGTYIL 479
           G+L +A+ L +++P E  +VTW A++    +H + +  +    ++L+  + P D  T++ 
Sbjct: 569 GRLVDAMSLFYQVPQE-SSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKP-DHVTFVS 626

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGIT---KEPGC 511
           L +  ++S   +E     + M+  GI    K  GC
Sbjct: 627 LLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGC 661



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 197/365 (53%), Gaps = 18/365 (4%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
           AK +H  ++  G     F+   L+N++     +  ++  FDQ+P+++V +W +MISAY  
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVH 194

Query: 153 AKMNDKALELLI-FMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRS 211
                +A+      +L   +RP+ +T+  VL+AC +L+  R++HC   K+GF+ +VFV +
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAA 254

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
           +LI +Y++ G    A  +F++MP RD+  WN++I G  QN +  +AL++   M+  G   
Sbjct: 255 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKM 314

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVF 329
           +  T+ S+L  C  L  +     +H++V+K+  + DL ++NAL++MY K G+LEDA   F
Sbjct: 315 NFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAF 374

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
            +M   DV+SW+++I+   QN     A   F  M+++  +P+ +T+V +    + +    
Sbjct: 375 QQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQS---- 430

Query: 390 DGWNHFKSMKKFYGIDPGREHY-------SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
                 K+ +  +G    R          + ++D+  + G L  A K+   +P + D ++
Sbjct: 431 ---RDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVK-DVIS 486

Query: 443 WRALL 447
           W  L+
Sbjct: 487 WNTLI 491


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/553 (40%), Positives = 342/553 (61%), Gaps = 34/553 (6%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L  A+++F+Q+P     +  ++I  Y +  +  +A+     M+ +G+ P+ FT+ ++ ++
Sbjct: 28  LPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKS 87

Query: 185 CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           C  L   +QLHC   K+GF SD ++++ L+++Y+  G L +A  VF++M  + +V W ++
Sbjct: 88  CGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATM 147

Query: 245 IGGFAQ--------------------------------NSDVDEALNLYKRMKRAGFAAD 272
           IG +AQ                                +SD +EAL+L+  M+ +G   D
Sbjct: 148 IGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGD 207

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
           + T+ S+L ACT L  LELG  +HV++ K   + D+ L  AL+DMY KCGS+E AM VF 
Sbjct: 208 KVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQ 267

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            M +KDV++W+ +I GLA  G   +AL+LF  M++S +KP+ IT VGVL ACSHAG V +
Sbjct: 268 EMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNE 327

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G  +F SM   YGI P  EHY CM+D+LGRAG++ EA  LI  MP  PD      LL AC
Sbjct: 328 GIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSAC 387

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
           ++H N  +A  AA++++ LDP++ GTY+LLSNIY++ + W+   ++R+ M  R I K PG
Sbjct: 388 RIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPG 447

Query: 511 CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKED 570
           CS IEV   +H F   D SHPQ  +I + L  ++++L   GY PD + VL D++ ++KE+
Sbjct: 448 CSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKEN 507

Query: 571 SIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYH 630
            +  HSEKLAI FGL+S T G  IR+ KNLR+C DCH+  K  +++ N+ I++RD  R+H
Sbjct: 508 ELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFH 567

Query: 631 HFQDGNCSCGDYW 643
           HF  G+CSC D+W
Sbjct: 568 HFTKGSCSCRDFW 580



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 191/454 (42%), Gaps = 86/454 (18%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPR-AMKAMHAMQCHGVRADSVTYAE 79
           F+    P   +CN+I R  ++           ++LPR A+     M   G+  D  T+  
Sbjct: 35  FNQIPNPTTFTCNSIIRGYTN-----------KNLPRQAILFYQLMMLQGLDPDRFTFPS 83

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139
           L K C     + E K +H H    GF  + ++ N L+NM+     L  A+ +FD+M  ++
Sbjct: 84  LFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKS 140

Query: 140 VVSWTTMISAYCDAKMN--------------------------------DKALELLIFML 167
           VVSW TMI AY    +                                 ++AL L   M 
Sbjct: 141 VVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQ 200

Query: 168 REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
             GV+ +  T +++L AC  L  L   + LH  I K   E DV + +AL+D+YAK G + 
Sbjct: 201 LSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIE 260

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
           +A  VF EMP +D++ W ++I G A      +AL L+  M+ +    D  T   VL AC+
Sbjct: 261 SAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACS 320

Query: 285 GLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
              L+  G                 N++ + Y                IQ  +  +  M+
Sbjct: 321 HAGLVNEGIAYF-------------NSMPNKYG---------------IQPSIEHYGCMV 352

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS-HAGFVEDGWNHFKSMKKFYG 403
             L + G   EA  L ++M ++   P+Y  +VG+L AC  H   V       ++ ++   
Sbjct: 353 DMLGRAGRIAEAEDLIQNMPMA---PDYFVLVGLLSACRIHGNLVVAE----RAAQQLIE 405

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           +DP       ++  +  + K  EA K + E+  E
Sbjct: 406 LDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVE 439



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 127/262 (48%), Gaps = 41/262 (15%)

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           G L  A  VFN++P       NSII G+   +   +A+  Y+ M   G   D+ T  S+ 
Sbjct: 26  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 85

Query: 281 RACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
           ++C    +L  G Q+H H  K  +  D  + N L++MY  CG L  A  VF +M+ K V+
Sbjct: 86  KSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVV 142

Query: 339 SWSTMISGLAQ---------------------------NGYS-----QEALKLFESMKVS 366
           SW+TMI   AQ                           NG+      +EAL LF  M++S
Sbjct: 143 SWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLS 202

Query: 367 RIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
            +K + +T+  +L AC+H G +E G W H    K+   +D      + ++D+  + G ++
Sbjct: 203 GVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALG--TALVDMYAKCGSIE 260

Query: 426 EAVKLIHEMPYEPDAVTWRALL 447
            A+++  EMP E D +TW AL+
Sbjct: 261 SAMRVFQEMP-EKDVMTWTALI 281


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/588 (41%), Positives = 367/588 (62%), Gaps = 28/588 (4%)

Query: 68  HGVRA-DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF-EPETFLVNILLNMHVKFSLL 125
           HG+RA +++T+  L    L   + + ++++  H L     EP+TF  NI+L+ +V+    
Sbjct: 85  HGMRAKNTITWNSL----LIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNF 140

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
           E+AQ  FD+MP ++  SW TMI+ Y      +KA EL   M+ +    N  +++A++   
Sbjct: 141 EKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEK----NEVSWNAMISG- 195

Query: 186 DSLIILRQLHCG-------IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP-TRD 237
                   + CG         KV     V   +A+I  Y K  ++  AE +F +M   ++
Sbjct: 196 -------YIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKN 248

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           LV WN++I G+ +NS  ++ L L++ M   G   + S L+S L  C+ L+ L+LG Q+H 
Sbjct: 249 LVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQ 308

Query: 298 HVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
            V K    +D+    +L+ MYCKCG L DA  +F  M +KDV++W+ MISG AQ+G + +
Sbjct: 309 IVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADK 368

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           AL LF  M  ++I+P++IT V VL AC+HAG V  G  +F+SM + Y ++P  +HY+CM+
Sbjct: 369 ALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMV 428

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           DLLGRAGKL+EA+KLI  MP+ P A  +  LLGAC+VH+N +LA  AA+K+L L+ Q+  
Sbjct: 429 DLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAA 488

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
            Y+ L+NIYA+  +W++VA VRK M+   + K PG SWIE+  ++H F  +D  HP++D 
Sbjct: 489 GYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDS 548

Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
           I+K LK L +K+   GY P+  + L ++E EQKE  + +HSEKLA+ FG + L QG  I+
Sbjct: 549 IHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQ 608

Query: 596 IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + KNLRICGDCH   K  +++E + I++RD  R+HHF+DG+CSCGDYW
Sbjct: 609 VFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 55/294 (18%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            +K   AM   G+R +S   +  +  C    A++  + +H  V       +   +  L++
Sbjct: 268 GLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLIS 327

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L +A  LF+ M +++VV+W  MIS Y      DKAL L   M+   +RP+  T
Sbjct: 328 MYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWIT 387

Query: 178 YSAVLRACDSLIILRQLHCGIIKVG---FES---DVFVR------SALIDIYAKLGELRN 225
           + AVL AC+        H G++ +G   FES   D  V       + ++D+  + G+L  
Sbjct: 388 FVAVLLACN--------HAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEE 439

Query: 226 AECVFNEMPTRD-LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
           A  +   MP R    V+ +++G          A  ++K ++ A FAA++           
Sbjct: 440 ALKLIRSMPFRPHAAVFGTLLG----------ACRVHKNVELAEFAAEK----------- 478

Query: 285 GLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
              LL+L +Q     ++          L ++Y      ED   V  RM + +V+
Sbjct: 479 ---LLQLNSQNAAGYVQ----------LANIYASKNRWEDVARVRKRMKESNVV 519


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/591 (39%), Positives = 358/591 (60%), Gaps = 5/591 (0%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++ +  M+  G+  +  T + ++K C    A    + +H  ++    + + ++   L++
Sbjct: 287 ALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVD 346

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K  LL++A+ +FD +P+R++V W  +IS       + +AL L   M +EG   N  T
Sbjct: 347 MYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTT 406

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            +AVL++  SL  +   RQ+H    K+GF SD  V + LID Y K   L  A  VF +  
Sbjct: 407 LAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHG 466

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
           + D++ + S+I   +Q    ++A+ L+  M R G   D   L+S+L AC  L+  E G Q
Sbjct: 467 SYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQ 526

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           VH H++K  +  D+   NAL+  Y KCGS+EDA   FS + +K V+SWS MI GLAQ+G+
Sbjct: 527 VHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGH 586

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            + AL +F  M    I PN+IT+  VL AC+HAG V++   +F SMK+ +GI+   EHY+
Sbjct: 587 GKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYA 646

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           CMIDLLGRAGKL +A++L++ MP++ +A  W ALL A +VHR+ +L   AA+K+  L+P+
Sbjct: 647 CMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPE 706

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
             GT++LL+N YA++  WD+VA+VRK M+   + KEP  SW+E+  ++H F V D SHP+
Sbjct: 707 KSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPR 766

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
              I   L  L   +   GY P+    L D++  +KE  + +HSE+LA+ F L+S   G 
Sbjct: 767 ARDIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNEKELLLSHHSERLAVAFALISTPAGA 826

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            IR++KNLRIC DCH   K  + + ++ I+IRD  R+HHF+DG CSC DYW
Sbjct: 827 PIRVKKNLRICRDCHAAFKFISDIVSREIIIRDINRFHHFRDGACSCRDYW 877



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 147/476 (30%), Positives = 233/476 (48%), Gaps = 52/476 (10%)

Query: 14  PSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD 73
           P S  R F     P    C+    + SSL+  ++     RD   A+ A  +M+   VR +
Sbjct: 53  PGSARRVFDEIPDP----CHV---SWSSLVTAYSNNAMPRD---ALGAFRSMRSCSVRCN 102

Query: 74  SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFD 133
                 ++KC  A  A    +L H   ++ G   + F+ N L+ M+  F  ++EA+++FD
Sbjct: 103 EFVLPVVLKC--APDAGFGTQL-HALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFD 159

Query: 134 QMP-ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS---LI 189
           +   ERN VSW  ++SAY        A+++   M+  GV+PN F +S V+ AC     L 
Sbjct: 160 EAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLE 219

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
             R++H  +I+ G++ DVF  +AL+D+Y+KLG++R A  VF ++P  D+V WN+ I G  
Sbjct: 220 AGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCV 279

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
            +     AL L  +MK +G   +  TL+S+L+AC G     LG Q+H  ++K   D D  
Sbjct: 280 LHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNY 339

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           +   L+DMY K G L+DA  VF  + Q+D++ W+ +ISG +      EAL LF  M+   
Sbjct: 340 IAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEG 399

Query: 368 IKPNYITIVGVLFACS-----------HA-----GFVEDGW-------NHFKSMKKFYGI 404
              N  T+  VL + +           HA     GF+ D         +++K     Y  
Sbjct: 400 FDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAY 459

Query: 405 DPGREH-------YSCMIDLLGRAGKLQEAVKLIHEM---PYEPDAVTWRALLGAC 450
               +H       ++ MI  L +    ++A+KL  EM     +PD     +LL AC
Sbjct: 460 RVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNAC 515



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 120/381 (31%), Positives = 189/381 (49%), Gaps = 15/381 (3%)

Query: 79  ELIKCCLARHAVEEAKL----VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ 134
           E I   L R+A  ++ L    +H H+L  G        N LL+ + K  L   A+ +FD+
Sbjct: 5   ETIGPLLTRYAATQSLLQGAHIHAHLLKSGLF--AVFRNHLLSFYSKCRLPGSARRVFDE 62

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQL 194
           +P+   VSW+++++AY +  M   AL     M    VR N F    VL+         QL
Sbjct: 63  IPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAGFGTQL 122

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP-TRDLVVWNSIIGGFAQNSD 253
           H   +  G   D+FV +AL+ +Y   G +  A  VF+E    R+ V WN ++  + +N  
Sbjct: 123 HALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDR 182

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNA 311
              A+ ++  M   G   ++   + V+ ACTG   LE G +VH  V++  YD D+   NA
Sbjct: 183 CSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANA 242

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+DMY K G +  A  VF ++ + DV+SW+  ISG   +G+ Q AL+L   MK S + PN
Sbjct: 243 LVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPN 302

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC--MIDLLGRAGKLQEAVK 429
             T+  +L AC+ +G    G      M K    +   ++Y    ++D+  + G L +A K
Sbjct: 303 VFTLSSILKACAGSGAFNLGRQIHGFMVK---ANADSDNYIAFGLVDMYAKHGLLDDAKK 359

Query: 430 LIHEMPYEPDAVTWRALLGAC 450
           +   +P + D V W AL+  C
Sbjct: 360 VFDWIP-QRDLVLWNALISGC 379


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/665 (37%), Positives = 383/665 (57%), Gaps = 52/665 (7%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAEL 80
           F     P +   NT+ R  +S  D  +          A++    M   G   +S ++  L
Sbjct: 21  FETIQEPNLLIWNTMLRGHASSSDPVS----------ALEMYVRMVSLGHLPNSYSFPFL 70

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFD------- 133
           +K C    A EE + +H  VL  G   + ++   L++M+ +   LE+A+ +FD       
Sbjct: 71  LKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDV 130

Query: 134 ------------------------QMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
                                   ++ ER+VVSW  MI+ Y +    ++ALEL   M+R 
Sbjct: 131 VSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRT 190

Query: 170 GVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKV----GFESDVFVRSALIDIYAKLGE 222
            VRP+  T  +V+ AC    S+ + RQ+H  +       GF S + + +ALID+Y+K G+
Sbjct: 191 NVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGD 250

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           +  A  +F  +  +D+V WN++IGG+   +   EAL L++ M R+G   +  TL SVL A
Sbjct: 251 VETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPA 310

Query: 283 CTGLALLELGTQVHVHVLK----YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
           C  L  +++G  +HV++ K      ++  L  +L+DMY KCG +E A  VF+ M+ + + 
Sbjct: 311 CAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLS 370

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
           SW+ MI G A +G +  A  LF  M+ +R++P+ IT VG+L ACSH+G ++ G   FKSM
Sbjct: 371 SWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSM 430

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
            + Y + P  EHY CMIDLLG +G  +EA ++IH MP EPD V W +LL ACK H N +L
Sbjct: 431 TQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLEL 490

Query: 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNK 518
           A   A+K++ ++P++ G+Y+LLSNIYA + +W++VA VR  +  +G+ K PGCS IEV+ 
Sbjct: 491 AESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDS 550

Query: 519 QIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEK 578
            +H F + D  HP+  +I   L+ +  +L   G+APDT+ VLQ++E E KE ++++HSEK
Sbjct: 551 VVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGALRHHSEK 610

Query: 579 LAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCS 638
           LAI FGL+S   G  + I KNLR+C +CH   KL +K+  + IV RD  R+HHF+DG CS
Sbjct: 611 LAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCS 670

Query: 639 CGDYW 643
           C DYW
Sbjct: 671 CCDYW 675



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 124/422 (29%), Positives = 210/422 (49%), Gaps = 45/422 (10%)

Query: 122 FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
           F  L  A  +F+ + E N++ W TM+  +  +     ALE+ + M+  G  PN +++  +
Sbjct: 11  FDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFL 70

Query: 182 LRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAK------------------- 219
           L++C         RQ+H  ++K+G   D +V ++LI +YA+                   
Sbjct: 71  LKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDV 130

Query: 220 ------------LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
                        G+ R+A  VF+E+  RD+V WN++I G+ +N   +EAL L+K M R 
Sbjct: 131 VSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRT 190

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLK------YDHDLILNNALLDMYCKCGS 321
               D+ TL SV+ AC     +ELG QVH  V        +   L + NAL+D+Y KCG 
Sbjct: 191 NVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGD 250

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
           +E A  +F  +  KDV+SW+T+I G       +EAL LF+ M  S   PN +T++ VL A
Sbjct: 251 VETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPA 310

Query: 382 CSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
           C+H G ++ G W H    KK  G+       + +ID+  + G ++ A ++ + M Y   +
Sbjct: 311 CAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLS 370

Query: 441 VTWRALLGACKVHRNTDLAICAAKKILN--LDPQDPGTYILLSNIYANSQKWDEVAEVRK 498
            +W A++    +H   + A     ++    ++P D  T++ L +  ++S   D   ++ K
Sbjct: 371 -SWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDI-TFVGLLSACSHSGLLDLGRQIFK 428

Query: 499 TM 500
           +M
Sbjct: 429 SM 430



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 101/212 (47%), Gaps = 20/212 (9%)

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           A+SVF  + + +++ W+TM+ G A +     AL+++  M      PN  +   +L +C+ 
Sbjct: 17  AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAK 76

Query: 385 AGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
           +   E+G   H + +K   G+D  R  ++ +I +  R G L++A K+     +  D V+ 
Sbjct: 77  SKAFEEGRQIHAQVLKLGCGLD--RYVHTSLISMYARNGGLEDARKVFDASSHR-DVVSC 133

Query: 444 RALLGACKVHRNTDLAICAAKKILN-LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502
            AL+       +      +A+K+ + +  +D  ++  +   Y  + +++E  E+ K M  
Sbjct: 134 TALITGYASRGD----FRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMR 189

Query: 503 RGITKEPG--------CSW---IEVNKQIHAF 523
             +  + G        C+    IE+ +Q+H++
Sbjct: 190 TNVRPDEGTLVSVVSACAQSGSIELGRQVHSW 221


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/656 (37%), Positives = 388/656 (59%), Gaps = 25/656 (3%)

Query: 5   AVSKLKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHA 64
           +VS+L  T+  ++ +  +      V   +  + NS  ++ D  R     D   A+ A  +
Sbjct: 12  SVSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNS--VIADLAR---SGDSAEALLAFSS 66

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+   +     ++   IK C +   +   K  H      G++ + F+ + L+ M+     
Sbjct: 67  MRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGK 126

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN-----MFTYS 179
           LE+A+ +FD++P+RN+VSWT+MI  Y    +N  AL+ +       V  N     MF  S
Sbjct: 127 LEDARKVFDEIPKRNIVSWTSMIRGY---DLNGNALDAVSLFKDLLVDENDDDDAMFLDS 183

Query: 180 ----AVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE--LRNAECVF 230
               +V+ AC  +    +   +H  +IK GF+  V V + L+D YAK GE  +  A  +F
Sbjct: 184 MGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIF 243

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALL 289
           +++  +D V +NSI+  +AQ+   +EA  +++R+ K      +  TL++VL A +    L
Sbjct: 244 DQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGAL 303

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
            +G  +H  V++   + D+I+  +++DMYCKCG +E A   F RM  K+V SW+ MI+G 
Sbjct: 304 RIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGY 363

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
             +G++ +AL+LF +M  S ++PNYIT V VL ACSHAG   +GW  F +MK  +G++PG
Sbjct: 364 GMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPG 423

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            EHY CM+DLLGRAG LQ+A  LI  M  +PD++ W +LL AC++H+N +LA  +  ++ 
Sbjct: 424 LEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLF 483

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
            LD  + G Y+LLS+IYA++ +W +V  VR  M+ RG+ K PG S +E+N ++H F + D
Sbjct: 484 ELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGD 543

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
             HPQ +KI + L  L +KL+  GY  +T+ V  D++ E+KE +++ HSEKLAI FG+M+
Sbjct: 544 EEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMN 603

Query: 588 LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
              G T+ + KNLR+C DCH   KL +K+ ++  V+RD  R+HHF+DG CSCGDYW
Sbjct: 604 TVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/531 (41%), Positives = 336/531 (63%), Gaps = 6/531 (1%)

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   + +A+ +FD+MP R+VVSWT +I+ Y    M  +A+ LL  MLR   RPN FT
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 178 YSAVLRA---CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           ++++L+A   C    I  Q+H   +K  ++ DV+V SAL+D+YA+  ++  A  VF+ + 
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
           +++ V WN++I GFA+ +D +  L  +  M+R GF A   T +S+  A   +  LE G  
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRW 180

Query: 295 VHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           VH H++K    L   + N +L MY K GS+ DA  VF RM ++D+++W+TM++ LAQ G 
Sbjct: 181 VHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGL 240

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            +EA+  FE ++   I+ N IT + VL ACSH G V++G  H+  M K Y + P  +HY 
Sbjct: 241 GKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEG-KHYFDMMKDYNVQPEIDHYV 299

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
             +DLLGRAG L+EA+  + +MP EP A  W ALLGAC++H+N  +   AA  +  LDP 
Sbjct: 300 SFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPD 359

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           D G  +LL NIYA++ KW++ A VRK M+A G+ KEP CSW+++   +H F   D +HP+
Sbjct: 360 DTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPK 419

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
              I +  + +  ++   GY P+T +VL  +  +++E  ++YHSEK+A+ F L+++  G 
Sbjct: 420 SGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGA 479

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +IRI KN+RICGDCH+  K  +K+  + IV+RD  R+HHF +G+CSCGDYW
Sbjct: 480 SIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 138/281 (49%), Gaps = 6/281 (2%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R +  T+  L+K   A       + +H   +   ++ + ++ + LL+M+ +   ++ A +
Sbjct: 55  RPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIM 114

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           +FD++  +N VSW  +I+ +      +  L     M R G     FTYS++  A   +  
Sbjct: 115 VFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGA 174

Query: 191 LRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L Q   +H  +IK G +   FV + ++ +YAK G + +A  VF+ M  RDLV WN+++  
Sbjct: 175 LEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTA 234

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI 307
            AQ     EA+  ++ +++ G   +Q T  SVL AC+   L++ G      +  Y+    
Sbjct: 235 LAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPE 294

Query: 308 LNN--ALLDMYCKCGSLEDAM-SVFSRMIQKDVISWSTMIS 345
           +++  + +D+  + G L++A+  VF   ++     W  ++ 
Sbjct: 295 IDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLG 335



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 34/253 (13%)

Query: 35  ITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAK 94
           +++N  S       F  + D    +     MQ +G  A   TY+ +        A+E+ +
Sbjct: 120 VSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGR 179

Query: 95  LVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK 154
            VH H++  G +   F+ N +L M+ K   + +A+ +FD+M +R++V+W TM++A     
Sbjct: 180 WVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYG 239

Query: 155 MNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGF----------- 203
           +  +A+     + + G++ N  T+ +VL AC         H G++K G            
Sbjct: 240 LGKEAVAHFEEIRKCGIQLNQITFLSVLTACS--------HGGLVKEGKHYFDMMKDYNV 291

Query: 204 --ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL-VVWNSIIGGFAQNSDVDEALNL 260
             E D +V  + +D+  + G L+ A     +MP      VW +++G          A  +
Sbjct: 292 QPEIDHYV--SFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLG----------ACRM 339

Query: 261 YKRMKRAGFAADQ 273
           +K  K   +AAD 
Sbjct: 340 HKNAKMGQYAADH 352


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/612 (38%), Positives = 364/612 (59%), Gaps = 40/612 (6%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLE--- 126
           V  + +T++ ++     R  V+  + +H  +   G++   F+ + L++M+ K   +    
Sbjct: 134 VNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDAN 193

Query: 127 ----------------------------EAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
                                       EA+ LFD MPE++ +SWTT+I+      +  +
Sbjct: 194 RIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKE 253

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALID 215
           A++    M  EG   + FT+ +VL AC   + L   +Q+H  II+  ++ ++FV SAL+D
Sbjct: 254 AVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLD 313

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           +Y K   ++ AE VF +M  ++++ W +++ G+ QN   +EA+ ++  M+R     D  T
Sbjct: 314 MYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFT 373

Query: 276 LTSVLRACTGLALLELGTQVHVHVLKYDHDLI----LNNALLDMYCKCGSLEDAMSVFSR 331
           L SV+ +C  LA LE G Q H   L     LI    ++NAL+ +Y KCGSLE A  +F  
Sbjct: 374 LGSVISSCANLASLEEGAQFHGQALA--SGLICFVTVSNALITLYGKCGSLEHAHQLFHE 431

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           M  +D +SW+ ++SG AQ G + E + LFE+M    I P+ +T VGVL ACS AG VE G
Sbjct: 432 MKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKG 491

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
           +++F+ M K + I P  +HY+CMIDLL RAG+L+EA   I++MP+ PDA+ W  LL +C+
Sbjct: 492 YHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCR 551

Query: 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGC 511
           ++ N ++   AA+ +  L+PQ+P +YILLS+IYA   KWD+VA++RK MR  G+ KEPG 
Sbjct: 552 LNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGH 611

Query: 512 SWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDS 571
           SWI+   ++H F+  D S P  D+I   L+ L  K++  GY PD ++VL D+E  +K   
Sbjct: 612 SWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVLHDVEKSEKIKM 671

Query: 572 IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHH 631
           + +HSEKLAI FGL+ +  G  IR+ KNLR+CGDCH   K  +++  + I++RD +R+H 
Sbjct: 672 LNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQREILVRDAVRFHL 731

Query: 632 FQDGNCSCGDYW 643
           F+DG CSCGD+W
Sbjct: 732 FKDGVCSCGDFW 743



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 142/453 (31%), Positives = 235/453 (51%), Gaps = 50/453 (11%)

Query: 38  NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRA----DSVTYAELIKCCLARHAVEEA 93
           +SS+      +FC +      +K +H   C  +R     ++  Y  LI        ++ A
Sbjct: 3   SSSNYYTAALKFCCEARNRAQVKKLH---CRIIRTLTNPETFLYNNLINTYGKLGDLKNA 59

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
           + V +H+     +P  F  N LL+ + K   L++ Q +FD MP  +VVSW +++S Y   
Sbjct: 60  RNVFDHIP----QPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGN 115

Query: 154 KMNDKALELLIFMLREG-VRPNMFTYSA--VLRACDSLIIL-RQLHCGIIKVGFESDVFV 209
            +  +++ +   ML++G V  N  T+S   +L +    + L RQ+H  I K G++S +FV
Sbjct: 116 GLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFV 175

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVV----------------------------- 240
            S L+D+YAK G + +A  +F E+P +++VV                             
Sbjct: 176 GSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDS 235

Query: 241 --WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
             W +II G  QN    EA++ +K M   GF  DQ T  SVL AC G   L+ G Q+H +
Sbjct: 236 ISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAY 295

Query: 299 VLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           +++ D+  ++ + +ALLDMYCKC +++ A +VF +M  K+VISW+ M+ G  QNGYS+EA
Sbjct: 296 IIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEA 355

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           +++F  M+ + I P+  T+  V+ +C++   +E+G   F       G+       + +I 
Sbjct: 356 VRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEG-AQFHGQALASGLICFVTVSNALIT 414

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           L G+ G L+ A +L HEM    D V+W AL+  
Sbjct: 415 LYGKCGSLEHAHQLFHEMKIR-DEVSWTALVSG 446



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 153/305 (50%), Gaps = 9/305 (2%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
              A+     M   G   D  T+  ++  C    A++E K +H +++   ++   F+ + 
Sbjct: 251 FKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSA 310

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           LL+M+ K   ++ A+ +F +M  +NV+SWT M+  Y     +++A+ +   M R  + P+
Sbjct: 311 LLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPD 370

Query: 175 MFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
            FT  +V+ +C +L  L    Q H   +  G    V V +ALI +Y K G L +A  +F+
Sbjct: 371 DFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFH 430

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           EM  RD V W +++ G+AQ    +E ++L++ M   G   D  T   VL AC+   L+E 
Sbjct: 431 EMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEK 490

Query: 292 GTQVHVHVLKYDHDLIL----NNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
           G      ++K +H +         ++D+  + G LE+A +  ++M    D I W+T++S 
Sbjct: 491 GYHYFECMVK-EHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSS 549

Query: 347 LAQNG 351
              NG
Sbjct: 550 CRLNG 554


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/538 (41%), Positives = 331/538 (61%), Gaps = 38/538 (7%)

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           + F    +++ + +  +LEEA+ +FD MPERN VSW  M++AY   +M D+A EL   M 
Sbjct: 129 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMM- 187

Query: 168 REGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
                            C ++     +  G                   YA+ G L  A+
Sbjct: 188 ----------------PCRNVASWNTMLTG-------------------YAQAGMLEEAK 212

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            VF+ MP +D V W +++  ++Q    +E L L+  M R G   ++S    VL  C  +A
Sbjct: 213 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIA 272

Query: 288 LLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
            LE G Q+H  +++  Y     + NALL MY KCG++EDA + F  M ++DV+SW+TMI+
Sbjct: 273 ALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIA 332

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           G A++G+ +EAL++F+ M+ +  KP+ IT+VGVL ACSH+G VE G ++F SM   +G+ 
Sbjct: 333 GYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVT 392

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
              EHY+CMIDLLGRAG+L EA  L+ +MP+EPD+  W ALLGA ++HRN +L   AA+K
Sbjct: 393 AKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEK 452

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
           I  L+P++ G Y+LLSNIYA+S KW +  ++R  M  RG+ K PG SWIEV  ++H F+ 
Sbjct: 453 IFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSA 512

Query: 526 ADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGL 585
            D  HP+ +KI   L+ L  ++   GY   T+ VL D+E E+KE  ++YHSEKLA+ +G+
Sbjct: 513 GDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGI 572

Query: 586 MSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +++  G+ IR+ KNLR+CGDCH   K  + +E + I++RD  R+HHF+ G+CSCGDYW
Sbjct: 573 LNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 160/382 (41%), Gaps = 50/382 (13%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           DSVTY  +I    + HA      +  H      E +    N +L  +V+   +EEA+ LF
Sbjct: 5   DSVTYNVMI----SSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192
           +   E +V+SW  ++S Y       +A EL   M    V       S   R  D +   R
Sbjct: 61  NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARR 120

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
                 ++     DVF  +A++  YA+ G L  A  VF+ MP R+ V WN+++  + Q  
Sbjct: 121 LFDAAPVR-----DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRR 175

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNAL 312
            +DEA  L+  M                  C  +A                      N +
Sbjct: 176 MMDEAKELFNMMP-----------------CRNVASW--------------------NTM 198

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           L  Y + G LE+A +VF  M QKD +SW+ M++  +Q G S+E L+LF  M       N 
Sbjct: 199 LTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNR 258

Query: 373 ITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
                VL  C+    +E G   H + ++  YG+  G    + ++ +  + G +++A    
Sbjct: 259 SAFACVLSTCADIAALECGMQLHGRLIRAGYGV--GCFVGNALLAMYFKCGNMEDARNAF 316

Query: 432 HEMPYEPDAVTWRALLGACKVH 453
            EM  E D V+W  ++     H
Sbjct: 317 EEME-ERDVVSWNTMIAGYARH 337



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 21/184 (11%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
            +A ++  C    A+E    +H  ++  G+    F+ N LL M+ K   +E+A+  F++M
Sbjct: 260 AFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEM 319

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLH 195
            ER+VVSW TMI+ Y       +ALE+   M     +P+  T   VL AC         H
Sbjct: 320 EERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACS--------H 371

Query: 196 CGIIKVGFE------SDVFVR------SALIDIYAKLGELRNAECVFNEMPTR-DLVVWN 242
            G+++ G         D  V       + +ID+  + G L  A  +  +MP   D  +W 
Sbjct: 372 SGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWG 431

Query: 243 SIIG 246
           +++G
Sbjct: 432 ALLG 435


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/572 (41%), Positives = 352/572 (61%), Gaps = 5/572 (0%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           TYA +IK C     +  A+ +H+ VL  GF     ++  L++ + K   L  A  +F  M
Sbjct: 308 TYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLM 367

Query: 136 P-ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQL 194
              +NVVSWT MI+          A  L   M  +GV PN FTYS +L A  + +   Q+
Sbjct: 368 SGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLP-PQI 426

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
           H  +IK  +E    V +AL+  Y+KL     A  +F  +  +D+V W++++  +AQ  D 
Sbjct: 427 HAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDS 486

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTG-LALLELGTQVHVHVLKYD-HD-LILNNA 311
           D A N++ +M   G   ++ T++SV+ AC    A ++LG Q H   +K+  HD L +++A
Sbjct: 487 DGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSA 546

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+ MY + GS+E A  +F R   +D++SW++M+SG AQ+GYSQ+AL +F  M+   I+ +
Sbjct: 547 LVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMD 606

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            +T + V+  C+HAG VE+G  +F SM + YGI P  EHY+CM+DL  RAGKL EA+ LI
Sbjct: 607 GVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLI 666

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
             M +    + WR LLGACKVH+N +L   AA+K+L+L+P D  TY+LLSNIY+ + KW 
Sbjct: 667 EGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWK 726

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
           E  EVRK M  + + KE GCSWI++  ++H+F  +D SHP  ++I   L+ +  KL   G
Sbjct: 727 EKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQEG 786

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           Y PDT++ L ++  EQKE  +  HSE+LA+ FGL++   G  + I KNLR+CGDCHT  K
Sbjct: 787 YCPDTSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCGDCHTVIK 846

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + +K+E++ IV+RD  R+HHF  G CSCGD+W
Sbjct: 847 MVSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 135/436 (30%), Positives = 220/436 (50%), Gaps = 23/436 (5%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN  +     T +     L   M+    M+  GV  +SVT+A ++    ++  V+  + V
Sbjct: 168 RNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRV 227

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H   +  G     F+ N L+NM+ K  L+EEA+V+F  M  R++VSW T+++       +
Sbjct: 228 HAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHD 287

Query: 157 DKALELL------IFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDV 207
            +AL+L       I ML +       TY+ V++ C     L + RQLH  ++K GF S  
Sbjct: 288 LEALQLFHDSRSSITMLTQS------TYATVIKLCANIKQLGLARQLHSSVLKRGFHSYG 341

Query: 208 FVRSALIDIYAKLGELRNAECVFNEMP-TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
            V +AL+D Y+K G+L NA  +F  M  ++++V W ++I G  QN DV  A  L+ RM+ 
Sbjct: 342 NVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMRE 401

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLED 324
            G A +  T +++L A    ++  L  Q+H  V+K  Y+   I+  ALL  Y K  + E+
Sbjct: 402 DGVAPNDFTYSTILTA----SVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEE 457

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           A+S+F  + QKDV+SWS M++  AQ G S  A  +F  M +  +KPN  TI  V+ AC+ 
Sbjct: 458 ALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACAS 517

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
                D    F ++   +         S ++ +  R G + E+ + I E   + D V+W 
Sbjct: 518 PTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSI-ESAQCIFERQTDRDLVSWN 576

Query: 445 ALLGACKVHRNTDLAI 460
           ++L     H  +  A+
Sbjct: 577 SMLSGYAQHGYSQKAL 592



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/323 (32%), Positives = 168/323 (52%), Gaps = 7/323 (2%)

Query: 66  QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI-LLNMHVKFSL 124
           +CHG R        ++K C +       K +H   +  G +     V   L++M++K+  
Sbjct: 95  RCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHS 154

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR- 183
           + + + +F+ MP+RNVV+WT++++ Y         +EL   M  EGV PN  T+++VL  
Sbjct: 155 VVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSV 214

Query: 184 -ACDSLIIL-RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
            A   ++ L R++H   +K G  S VFV ++L+++YAK G +  A  VF  M TRD+V W
Sbjct: 215 VASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSW 274

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N+++ G   N    EAL L+   + +     QST  +V++ C  +  L L  Q+H  VLK
Sbjct: 275 NTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLK 334

Query: 302 YDHDLILN--NALLDMYCKCGSLEDAMSVFSRMI-QKDVISWSTMISGLAQNGYSQEALK 358
                  N   AL+D Y K G L +A+ +F  M   ++V+SW+ MI+G  QNG    A  
Sbjct: 335 RGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAA 394

Query: 359 LFESMKVSRIKPNYITIVGVLFA 381
           LF  M+   + PN  T   +L A
Sbjct: 395 LFSRMREDGVAPNDFTYSTILTA 417



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 183/379 (48%), Gaps = 25/379 (6%)

Query: 102 SGGFEPE-------TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK 154
           +G   PE       T   ++ L      +    A+  FD++P RN +       A   + 
Sbjct: 24  AGALAPELAPKSQSTLACSVPLENQTNLNDATGARQAFDEIPHRNTLDHALFDHARRGSV 83

Query: 155 MNDKALELLIFMLR-EGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFE-SDVFV 209
              +AL+  + + R  G R        VL+ C S+   ++ +QLH   I+ G +  DV V
Sbjct: 84  --HQALDHFLDVHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGV 141

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
            ++L+D+Y K   + +   VF  MP R++V W S++ G+ Q+  + + + L+ RM+  G 
Sbjct: 142 GTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGV 201

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMS 327
             +  T  SVL       +++LG +VH   +K+     + + N+L++MY KCG +E+A  
Sbjct: 202 WPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARV 261

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS---RIKPNYITIVGVLFACSH 384
           VF  M  +D++SW+T+++GL  NG+  EAL+LF   + S     +  Y T++ +      
Sbjct: 262 VFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQ 321

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
            G       H   +K+  G        + ++D   +AG+L  A+ +   M    + V+W 
Sbjct: 322 LGLARQ--LHSSVLKR--GFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWT 377

Query: 445 ALLGACKVHRNTDLAICAA 463
           A++  C   +N D+ + AA
Sbjct: 378 AMINGCI--QNGDVPLAAA 394


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/524 (41%), Positives = 336/524 (64%), Gaps = 5/524 (0%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           ++  + +F+ MPE+++VSW T+I+      +  + L ++  M    ++P+ FT S+VL  
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPL 309

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
               + +   +++H   I+ G +++V+V S+LID+YAK   + ++  VF  +  RD + W
Sbjct: 310 IAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISW 369

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           NSII G  QN   DE L  +++M  A       + +S++ AC  L  L LG Q+H ++ +
Sbjct: 370 NSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITR 429

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
             +D ++ + ++L+DMY KCG++  A  +F RM  +D++SW+ MI G A +G++ +A++L
Sbjct: 430 NGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIEL 489

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           FE MK   I+PNY+  + VL ACSHAG V++ W +F SM   +GI PG EHY+ + DLLG
Sbjct: 490 FEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLG 549

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           RAG+L+EA   I  MP  P    W  LL AC+VH+N D+A   A +IL +DP++ G YIL
Sbjct: 550 RAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYIL 609

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           L+NIY+ +++W E A+ R ++R  GI K P CSWIEV  +++AF   D SHP  +KI + 
Sbjct: 610 LANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREA 669

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
           ++ L++ +   GY PDT+ V  D+E EQK+  +  HSE+LAIVFG+++   G TIR+ KN
Sbjct: 670 MEVLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIRVTKN 729

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           LR+C DCHT  K  +K+  + IV+RD  R+HHF++G CSCGDYW
Sbjct: 730 LRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 149/291 (51%), Gaps = 21/291 (7%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           ++ DS T + ++        + + K +H   +  G + E ++ + L++M+ K + + ++ 
Sbjct: 296 LKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSY 355

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            +F  + ER+ +SW ++I+      + D+ L+    ML   ++P  +++S+++ AC  L 
Sbjct: 356 RVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLT 415

Query: 190 IL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            L   +QLH  I + GF+ ++F+ S+L+D+YAK G +R A  +F+ M  RD+V W ++I 
Sbjct: 416 TLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIM 475

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL 306
           G A +    +A+ L+++MK  G   +     +VL AC+   L++          KY + +
Sbjct: 476 GCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVD-------EAWKYFNSM 528

Query: 307 ILN----------NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
            L+           A+ D+  + G LE+A      M I      W+T++S 
Sbjct: 529 TLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSA 579



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 160/347 (46%), Gaps = 35/347 (10%)

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++   +LL ++  LF+ +     ++W ++I  Y    +  K+L   I ML  G+ P+   
Sbjct: 51  IYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNV 110

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR-------NAE 227
           + +VL+AC  L+ L     LH  II+VG + D++  +AL+++Y+KL  L+        A 
Sbjct: 111 FPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGAS 170

Query: 228 CVFNEMP--TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA-CT 284
            V +EM   TR +   + ++G   +     EA N     +   F A    +    R+   
Sbjct: 171 QVLDEMTERTRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYR 230

Query: 285 GLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
            +    LG Q+        H +              S++    +F  M +KD++SW+T+I
Sbjct: 231 EMEACNLGQQIK----DISHSM--------------SVDSVRKIFEMMPEKDLVSWNTII 272

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYG 403
           +G A+NG   E L +   M  + +KP+  T+  VL   +    +  G   H  S+++  G
Sbjct: 273 AGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQ--G 330

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           +D      S +ID+  +  ++ ++ + +  +  E D ++W +++  C
Sbjct: 331 LDAEVYVASSLIDMYAKCTRVVDSYR-VFTLLTERDGISWNSIIAGC 376



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 6/221 (2%)

Query: 50  CYQRDL-PRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           C Q  L    +K    M    ++  S +++ ++  C     +   K +H ++   GF+  
Sbjct: 376 CVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDEN 435

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F+ + L++M+ K   +  A+ +FD+M  R++VSWT MI           A+EL   M  
Sbjct: 436 IFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKT 495

Query: 169 EGVRPNMFTYSAVLRACDSLIIL----RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           EG+ PN   + AVL AC    ++    +  +   +  G    V   +A+ D+  + G L 
Sbjct: 496 EGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLE 555

Query: 225 NAECVFNEMPTRDL-VVWNSIIGGFAQNSDVDEALNLYKRM 264
            A      MP      VW +++     + +VD A  +  R+
Sbjct: 556 EAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRI 596


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/594 (38%), Positives = 359/594 (60%), Gaps = 7/594 (1%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           FC   +   A+  ++ M+  GV+ D++T A ++  C     V    L+H HVL  G + +
Sbjct: 197 FCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSD 256

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F+ N L+NM+ KF  L++AQ++FDQM  R++VSW ++I+AY        AL     M  
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQL 316

Query: 169 EGVRPNMFTY----SAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
            G+RP++ T     S   +  D  I    L   I +   + DV + +AL+++YAKLG + 
Sbjct: 317 GGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMN 376

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA-GFAADQSTLTSVLRAC 283
            A  VF+++P +D + WN+++ G+ QN    EA++ Y  M+       +Q T  S++ A 
Sbjct: 377 CAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAY 436

Query: 284 TGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
           + +  L+ G ++H  ++K     D+ +   L+D+Y KCG LEDAMS+F  + +   + W+
Sbjct: 437 SHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWN 496

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
            +I+ L  +G  +EAL+LF+ M   R+K ++IT V +L ACSH+G V++G   F  M+K 
Sbjct: 497 AIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKE 556

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
           YGI P  +HY CM+DLLGRAG L++A +L+  MP +PDA  W ALL ACK++ N +L   
Sbjct: 557 YGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTL 616

Query: 462 AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIH 521
           A+ ++L +D ++ G Y+LLSNIYAN++KW+ V +VR   R RG+ K PG S + V  +  
Sbjct: 617 ASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAE 676

Query: 522 AFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAI 581
            F   + +HP+  +I K LK L  K+  +GY PD ++V QD+E ++KE  +  HSE+LAI
Sbjct: 677 VFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAI 736

Query: 582 VFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDG 635
            FG++S      IRI KNLR+CGDCH   K  +++  + IV+RD  R+HHF+DG
Sbjct: 737 AFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDG 790



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/295 (34%), Positives = 175/295 (59%), Gaps = 6/295 (2%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
           V   K +H  +L  G      L   L+N++V    +  ++  FD + ++N+ SW ++ISA
Sbjct: 35  VNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISA 94

Query: 150 YCDAKMNDKALELL--IFMLREG--VRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFES 205
           Y       +A+  +  +F +  G  +RP+ +T+  +L+AC SL+  +++HC + K+GFE 
Sbjct: 95  YVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFED 154

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           DVFV ++L+ +Y++ G L  A  VF +MP +D+  WN++I GF QN +   AL +  RMK
Sbjct: 155 DVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMK 214

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLE 323
             G   D  T+ S+L  C     +  G  +H+HVLK+  D D+ ++NAL++MY K G L+
Sbjct: 215 GEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQ 274

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
           DA  VF +M  +D++SW+++I+   QN     AL+ F+ M++  I+P+ +T+V +
Sbjct: 275 DAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSL 329



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 147/290 (50%), Gaps = 13/290 (4%)

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           ++A+  +C ++   ++LH  ++  G   ++ + + LI++Y   G++  +   F+ +  ++
Sbjct: 25  FNALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKN 84

Query: 238 LVVWNSIIGGFAQNSDVDEALN----LYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           +  WNSII  + +     EA+N    L+          D  T   +L+AC  L     G 
Sbjct: 85  IFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLV---DGK 141

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           +VH  V K  ++ D+ +  +L+ +Y + G L+ A  VF  M  KDV SW+ MISG  QNG
Sbjct: 142 KVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNG 201

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREH 410
            +  AL +   MK   +K + IT+  +L  C+ +  V +G   H   +K  +G+D     
Sbjct: 202 NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK--HGLDSDVFV 259

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            + +I++  + G+LQ+A  +  +M    D V+W +++ A + + +   A+
Sbjct: 260 SNALINMYSKFGRLQDAQMVFDQMEVR-DLVSWNSIIAAYEQNNDPSTAL 308


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/585 (38%), Positives = 355/585 (60%), Gaps = 6/585 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  G +    T++ ++K  +  H     + +H   ++ GF  +  + N +L+ + K   
Sbjct: 241 MRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDR 300

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           + E ++LFD+MPE + VS+  +IS+Y  A   + +L     M   G     F ++ +L  
Sbjct: 301 VLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSI 360

Query: 185 C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
                SL + RQLHC  +    +S + V ++L+D+YAK      AE +F  +P R  V W
Sbjct: 361 AANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSW 420

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            ++I G+ Q       L L+ +M+ +   ADQST  +VL+A    A L LG Q+H  +++
Sbjct: 421 TALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIR 480

Query: 302 YDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
             +  ++   + L+DMY KCGS++DA+ VF  M  ++ +SW+ +IS  A NG  + A+  
Sbjct: 481 SGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGA 540

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F  M  S ++P+ ++I+GVL ACSH GFVE G  +F++M   YGI P ++HY+CM+DLLG
Sbjct: 541 FAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLG 600

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP-QDPGTYI 478
           R G+  EA KL+ EMP+EPD + W ++L AC++H+N  LA  AA+K+ +++  +D   Y+
Sbjct: 601 RNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYV 660

Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
            +SNIYA + +W++V +V+K MR RGI K P  SW+EVN +IH F+  D +HP  D+I +
Sbjct: 661 SMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVR 720

Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRK 598
            +  L  ++   GY PDT+ V+QD++ + K +S++YHSE+LA+ F L+S  +G  I + K
Sbjct: 721 KINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMK 780

Query: 599 NLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           NLR C DCH   KL +K+  + I +RD  R+HHF +G CSCGDYW
Sbjct: 781 NLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 124/420 (29%), Positives = 217/420 (51%), Gaps = 21/420 (5%)

Query: 73  DSVTYAELIKCC---LARHAVEEAKLVHNHVLSGGFEPETFLV--NILLNMHVKFSLLEE 127
           D VT+  L+  C   + ++AV +   VH   +  GF+   FL   N+LL  + +   L+ 
Sbjct: 146 DHVTFTTLLPGCNDAVPQNAVGQ---VHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDL 202

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A VLF+++PE++ V++ T+I+ Y    +  +++ L + M + G +P+ FT+S VL+A   
Sbjct: 203 ACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVG 262

Query: 188 L---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L    + +QLH   +  GF  D  V + ++D Y+K   +     +F+EMP  D V +N +
Sbjct: 263 LHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVV 322

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
           I  ++Q    + +L+ ++ M+  GF        ++L     L+ L++G Q+H   L    
Sbjct: 323 ISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATA 382

Query: 305 DLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           D IL+  N+L+DMY KC   E+A  +F  + Q+  +SW+ +ISG  Q G     LKLF  
Sbjct: 383 DSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTK 442

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY---SCMIDLLG 419
           M+ S ++ +  T   VL A +    +  G    K +  F       E+    S ++D+  
Sbjct: 443 MRGSNLRADQSTFATVLKASASFASLLLG----KQLHAFIIRSGNLENVFSGSGLVDMYA 498

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           + G +++AV++  EMP + +AV+W AL+ A   + + + AI A  K++    Q     IL
Sbjct: 499 KCGSIKDAVQVFEEMP-DRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSIL 557



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 185/391 (47%), Gaps = 17/391 (4%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G   D+     +++  L R  V  A+ V++ +        T   N +++ HVK   +  A
Sbjct: 43  GFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMP----HKNTVSTNTMISGHVKTGDVSSA 98

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG--VRPNMFTYSAVLRACD 186
           + LFD MP+R VV+WT ++  Y      D+A +L   M R      P+  T++ +L  C+
Sbjct: 99  RDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCN 158

Query: 187 SLI---ILRQLHCGIIKVGFESDVF--VRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
             +    + Q+H   +K+GF+++ F  V + L+  Y ++  L  A  +F E+P +D V +
Sbjct: 159 DAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTF 218

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N++I G+ ++    E+++L+ +M+++G      T + VL+A  GL    LG Q+H   + 
Sbjct: 219 NTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVT 278

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
             +  D  + N +LD Y K   + +   +F  M + D +S++ +IS  +Q    + +L  
Sbjct: 279 TGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHF 338

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLL 418
           F  M+             +L   ++   ++ G   H +++      D      + ++D+ 
Sbjct: 339 FREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQAL--LATADSILHVGNSLVDMY 396

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            +    +EA  +   +P +   V+W AL+  
Sbjct: 397 AKCEMFEEAELIFKSLP-QRTTVSWTALISG 426



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 135/296 (45%), Gaps = 41/296 (13%)

Query: 192 RQLHCGIIKVGFESDV----FV---------------------------RSALIDIYAKL 220
           R++   IIK GF++D     F+                            + +I  + K 
Sbjct: 33  RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT 92

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA--DQSTLTS 278
           G++ +A  +F+ MP R +V W  ++G +A+NS  DEA  L+++M R+      D  T T+
Sbjct: 93  GDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTT 152

Query: 279 VLRACTGLALLELGTQVHVHVLKYDHD----LILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
           +L  C          QVH   +K   D    L ++N LL  YC+   L+ A  +F  + +
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE 212

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA-CSHAGFVEDGWN 393
           KD ++++T+I+G  ++G   E++ LF  M+ S  +P+  T  GVL A      F      
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQL 272

Query: 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           H  S+   +  D    +   ++D   +  ++ E   L  EMP E D V++  ++ +
Sbjct: 273 HALSVTTGFSRDASVGNQ--ILDFYSKHDRVLETRMLFDEMP-ELDFVSYNVVISS 325



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 100/203 (49%), Gaps = 21/203 (10%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            +K    M+   +RAD  T+A ++K   +  ++   K +H  ++  G     F  + L++
Sbjct: 436 GLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVD 495

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +++A  +F++MP+RN VSW  +ISA+ D    + A+     M+  G++P+  +
Sbjct: 496 MYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVS 555

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFE-----SDVFV-------RSALIDIYAKLGELRN 225
              VL AC         HCG ++ G E     S ++         + ++D+  + G    
Sbjct: 556 ILGVLTACS--------HCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAE 607

Query: 226 AECVFNEMPTR-DLVVWNSIIGG 247
           AE + +EMP   D ++W+S++  
Sbjct: 608 AEKLMDEMPFEPDEIMWSSVLNA 630


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/586 (38%), Positives = 365/586 (62%), Gaps = 8/586 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ   V  DS T+  L+K C     ++  + VH  V   GF+ + F+ N L+ ++ K   
Sbjct: 110 MQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRR 169

Query: 125 LEEAQVLFD--QMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
           L  A+ +F+   +PER +VSWT ++SAY       +ALE+   M +  V+P+     +VL
Sbjct: 170 LGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVL 229

Query: 183 RACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
            A   L  L+Q   +H  ++K+G E +  +  +L  +YAK G++  A+ +F++M + +L+
Sbjct: 230 NAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLI 289

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
           +WN++I G+A+N    EA++++  M       D  ++TS + AC  +  LE    ++ +V
Sbjct: 290 LWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYV 349

Query: 300 LKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
            + D+  D+ +++AL+DM+ KCGS+E A  VF R + +DV+ WS MI G   +G ++EA+
Sbjct: 350 GRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAI 409

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
            L+ +M+   + PN +T +G+L AC+H+G V +GW  F  M   + I+P ++HY+C+IDL
Sbjct: 410 SLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMAD-HKINPQQQHYACVIDL 468

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           LGRAG L +A ++I  MP +P    W ALL ACK HR+ +L   AA+++ ++DP + G Y
Sbjct: 469 LGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHY 528

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           + LSN+YA ++ WD VAEVR  M+ +G+ K+ GCSW+EV  ++ AF V D SHP+ ++I 
Sbjct: 529 VQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIE 588

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
           + ++ +  +L   G+  + +  L DL  E+ E+++  HSE++AI +GL+S  QG  +RI 
Sbjct: 589 RQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRIT 648

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLR C +CH   KL +K+ ++ IV+RD  R+HHF+DG CSCGDYW
Sbjct: 649 KNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 127/404 (31%), Positives = 207/404 (51%), Gaps = 23/404 (5%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+ +DS  YA LI    A H  +  K +H  +L  G +   FL+  L++    F  +  A
Sbjct: 17  GIHSDSF-YASLIDS--ATHKAQ-LKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFA 72

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +FD +P   +  W  +I  Y        AL +   M    V P+ FT+  +L+AC  L
Sbjct: 73  RQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGL 132

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN--EMPTRDLVVWNS 243
             L   R +H  + ++GF++DVFV++ LI +YAK   L +A  VF    +P R +V W +
Sbjct: 133 SHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTA 192

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY- 302
           I+  +AQN +  EAL ++  M++     D   L SVL A T L  L+ G  +H  V+K  
Sbjct: 193 IVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMG 252

Query: 303 ---DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
              + DL++  +L  MY KCG +  A  +F +M   ++I W+ MISG A+NGY++EA+ +
Sbjct: 253 LEIEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDM 310

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY---SCMID 416
           F  M    ++P+ I+I   + AC+  G +E      +SM ++ G    R+     S +ID
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVGSLEQA----RSMYEYVGRSDYRDDVFISSALID 366

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           +  + G + E  +L+ +   + D V W A++    +H     AI
Sbjct: 367 MFAKCGSV-EGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAI 409



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 173/323 (53%), Gaps = 8/323 (2%)

Query: 170 GVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           G+  + F Y++++ +      L+Q+H  ++ +G +   F+ + LI   +  G++  A  V
Sbjct: 17  GIHSDSF-YASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQV 75

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F+++P   +  WN+II G+++N+   +AL +Y  M+ A  + D  T   +L+AC+GL+ L
Sbjct: 76  FDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHL 135

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS--RMIQKDVISWSTMIS 345
           ++G  VH  V +  +D D+ + N L+ +Y KC  L  A +VF    + ++ ++SW+ ++S
Sbjct: 136 QMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVS 195

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
             AQNG   EAL++F  M+   +KP+++ +V VL A +    ++ G +   S+ K  G++
Sbjct: 196 AYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKM-GLE 254

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
              +    +  +  + G++  A  L  +M   P+ + W A++     +     AI    +
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISGYAKNGYAREAIDMFHE 313

Query: 466 ILNLDPQDPGTYILLSNIYANSQ 488
           ++N D + P T  + S I A +Q
Sbjct: 314 MINKDVR-PDTISITSAISACAQ 335



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 143/297 (48%), Gaps = 10/297 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+   V+ D V    ++        +++ + +H  V+  G E E  L+  L  
Sbjct: 206 ALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNT 265

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +  A++LFD+M   N++ W  MIS Y       +A+++   M+ + VRP+  +
Sbjct: 266 MYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTIS 325

Query: 178 YSAVLRACDSLIILRQLHCGIIKVG---FESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            ++ + AC  +  L Q       VG   +  DVF+ SALID++AK G +  A  VF+   
Sbjct: 326 ITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTL 385

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD+VVW+++I G+  +    EA++LY+ M+R G   +  T   +L AC    ++  G  
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445

Query: 295 VHVHVLKYDHDLILNN----ALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
                L  DH +         ++D+  + G L+ A  V   M +Q  V  W  ++S 
Sbjct: 446 --FFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSA 500


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/536 (41%), Positives = 329/536 (61%), Gaps = 5/536 (0%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           NIL   ++K   L  A+ LFD+MPERNV +W  M++   +   ++++L   + M REG+ 
Sbjct: 173 NILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMH 232

Query: 173 PNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P+ F   +V R C  L   +  RQ+H  +++ G + D+ V S+L  +Y + G L+  E V
Sbjct: 233 PDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAV 292

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
              +P+  +V  N+II G  QN D + AL  +  M+  G AAD  T  S + +C+ LA L
Sbjct: 293 LRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAAL 352

Query: 290 ELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
             G Q+H  V+K   D ++     L+ MY +CG L D+  VF      D    S MIS  
Sbjct: 353 AQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAY 412

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
             +G+ Q+A++LF+ M     +P+ +T + +L+ACSH+G  E+G + F+ M K YG+ P 
Sbjct: 413 GFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPS 472

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            +HY+C++DLLGR+G L EA  LI  MP  PD V W+ LL ACK  +N D+A   AK+++
Sbjct: 473 VKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVI 532

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
            LDP D  +Y+LLSNI A S++W +V+EVRK MR   + KEPG SW+E+   IH F   D
Sbjct: 533 ELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGD 592

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
            SHP+  +I++ L+ ++ K+   GY+PD + VL D+E E+KE S+ +HSEKLAI F  +S
Sbjct: 593 ESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLS 652

Query: 588 LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L +G  IR+ KNLR+C DCH   KL +++  + IV+RD  R+HHF+DG CSC DYW
Sbjct: 653 LPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 708



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 162/345 (46%), Gaps = 38/345 (11%)

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           +S + RAC +L  LRQLH      G  +D F  + L+  YA LG+L  A  +F  +P R+
Sbjct: 109 FSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRN 168

Query: 238 LVVWNSIIGGFAQNSDV-------------------------------DEALNLYKRMKR 266
           ++ WN + GG+ +N D+                               +E+L  +  M+R
Sbjct: 169 VMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRR 228

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLED 324
            G   D+  L SV R C GL  +  G QVH +V++   D D+ + ++L  MY +CG L++
Sbjct: 229 EGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQE 288

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
             +V   +    ++S +T+I+G  QNG S+ AL+ F  M+   +  + +T V  + +CS 
Sbjct: 289 GEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSD 348

Query: 385 AGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
              +  G   H + MK   G+D      +C++ +  R G L ++ ++        D    
Sbjct: 349 LAALAQGQQIHGQVMKA--GVDKVVPVMTCLVHMYSRCGCLGDSERVFFGY-CGSDTFLL 405

Query: 444 RALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
            A++ A   H +   AI   K+++N    +P     L+ +YA S 
Sbjct: 406 SAMISAYGFHGHGQKAIELFKQMMN-GGAEPSDVTFLALLYACSH 449



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 105/244 (43%), Gaps = 21/244 (8%)

Query: 29  VASCNTITRNSSSLLDD---FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCL 85
           + SCNTI    +   D       FC  R +             GV AD VT+   I  C 
Sbjct: 301 IVSCNTIIAGRTQNGDSEGALEYFCMMRSV-------------GVAADVVTFVSAISSCS 347

Query: 86  ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTT 145
              A+ + + +H  V+  G +    ++  L++M+ +   L +++ +F      +    + 
Sbjct: 348 DLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSA 407

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD-SLIILRQLHCGIIKV--- 201
           MISAY       KA+EL   M+  G  P+  T+ A+L AC  S +    + C  +     
Sbjct: 408 MISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTY 467

Query: 202 GFESDVFVRSALIDIYAKLGELRNAECVFNEMP-TRDLVVWNSIIGGFAQNSDVDEALNL 260
           G +  V   + ++D+  + G L  AE +   MP T D V+W +++       + D A  +
Sbjct: 468 GMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERI 527

Query: 261 YKRM 264
            KR+
Sbjct: 528 AKRV 531


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/603 (38%), Positives = 353/603 (58%), Gaps = 5/603 (0%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105
            T F        A++    MQ  G+  + VT+  L+        +EE   +H  +   G 
Sbjct: 334 ITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGL 393

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           +  T + N L+N++ +    ++A+ +FDQ+   N++SW +MI  Y   + +D AL+L   
Sbjct: 394 DDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRT 453

Query: 166 MLREGVRPNMFTYSAVLRAC--DSLIILRQL-HCGIIKVGFESDVFVRSALIDIYAKLGE 222
           M ++G++P+   +  +L AC   S    R+L H  + + G      V+++L+++YAK GE
Sbjct: 454 MQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGE 513

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           L  AE +  EM  + +  WN +I G+A +    EAL  Y++++      D+ T  SVL A
Sbjct: 514 LDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNA 573

Query: 283 CTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           CT    L  G  +H + ++   D D+I+ NAL +MY KCGS+E+A  +F  M  +  +SW
Sbjct: 574 CTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSW 633

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           + M+   AQ+G S+E LKL   M+   +K N IT V VL +CSHAG + +G  +F S+  
Sbjct: 634 NGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGH 693

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
             GI+   EHY C++DLLGRAGKLQEA K I +MP EP  VTW +LLGAC+V ++ D   
Sbjct: 694 DRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGK 753

Query: 461 CAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQI 520
            AA K+L LDP +    ++LSNIY+    W   A++R+ M +R + K PG S I+V  ++
Sbjct: 754 LAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKV 813

Query: 521 HAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLA 580
           H F V D+SHP+  +I   ++ L   +   GY PDT  VL D++ EQKE  + YHSEKLA
Sbjct: 814 HEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLA 873

Query: 581 IVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
           I FGL+S  +  ++ I KNLR+C DCHT  K  +K+  + IV+RD  R+HHF+DG+CSC 
Sbjct: 874 IAFGLISTPETSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCK 933

Query: 641 DYW 643
           DYW
Sbjct: 934 DYW 936



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/405 (30%), Positives = 212/405 (52%), Gaps = 14/405 (3%)

Query: 53  RDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
           +    A+   HAM   GV  +++T   ++  C +   + +  LVH   L  GF   T + 
Sbjct: 37  KSFQEALALFHAMLLEGVAPNAITLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVA 96

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY----CDAKMNDKALELLIFMLR 168
             LLNM+ K   L +AQ +F++M E+NVV+W  M+  Y    C  K+   A+EL   ML 
Sbjct: 97  TALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKL---AVELFTRMLL 153

Query: 169 EGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           EGV+ N+ T+  VL +    D+L   + +H  + +     DVFV +AL++ Y K G L +
Sbjct: 154 EGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTD 213

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VF+ MP R +  WNS+I  ++ +    EA  +++RM++ G   D+ T  S+L AC  
Sbjct: 214 ARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVN 273

Query: 286 LALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
              L+ G  V   +    ++ DL +  AL+ MY +C S EDA  VF RM Q ++I+WS +
Sbjct: 274 PETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAI 333

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           I+  A +G+  EAL+ F  M+   I PN +T + +L   +    +E+  +    +   +G
Sbjct: 334 ITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEE-LSRIHLLITEHG 392

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
           +D      + ++++ GR     +A  +  ++   P+ ++W +++G
Sbjct: 393 LDDTTTMRNALVNVYGRCESPDDARTVFDQLEL-PNLISWNSMIG 436



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 110/349 (31%), Positives = 180/349 (51%), Gaps = 22/349 (6%)

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ +   L +A   F ++  RNVVSW  MISAY   K   +AL L   ML EGV PN  T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 178 YSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             AVL +C S   LR    +H   ++ GF  +  V +AL+++Y K G L +A+ VF EM 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 235 TRDLVVWNSIIGGFA-QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
            +++V WN+++G ++ Q      A+ L+ RM   G  A+  T  +VL +      L  G 
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 294 QVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
            +H  V + +H  D+ +N AL++ Y KCGSL DA  VF  M  + V +W++MIS  + + 
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK-------FYGI 404
            S EA  +F+ M+    + + +T + +L AC +   ++ G +  +S+ +       F G 
Sbjct: 241 RSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVG- 299

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
                  + +I +  R    ++A ++   M  + + +TW A++ A   H
Sbjct: 300 -------TALITMYARCRSPEDAAQVFGRMK-QTNLITWSAIITAFADH 340


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/597 (39%), Positives = 367/597 (61%), Gaps = 14/597 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+  +  M+  G+  DSVT A ++  C     +  A L+H +V+  G E E F+ N L+
Sbjct: 256 QALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALI 315

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR---EGVRP 173
           NM+ KF  L +AQ +F QM  R+VVSW ++I+AY   + ND  +    F  +    G+ P
Sbjct: 316 NMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAY---EQNDDPVTARGFFFKMQLNGLEP 372

Query: 174 NMFTY---SAVLRACDSLIILRQLHCGIIKVGFESD-VFVRSALIDIYAKLGELRNAECV 229
           ++ T    +++          R +H  I++ G+  + V + +A++D+YAKLG + +A  V
Sbjct: 373 DLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKV 432

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA-GFAADQSTLTSVLRACTGLAL 288
           FN +P +D+V WN++I G+ QN    EA+ +Y+ M+       +Q T  S+L A   +  
Sbjct: 433 FNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGA 492

Query: 289 LELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           L+ G ++H H++K +   D+ +   L+D+Y KCG L DAM +F ++ ++  + W+ +IS 
Sbjct: 493 LQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISC 552

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
              +G+ ++ALKLF  M+   +KP+++T + +L ACSH+G V++G   F  M++ YGI P
Sbjct: 553 HGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQE-YGIKP 611

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
             +HY CM+DLLGRAG L+ A   I +MP  PDA  W ALLGAC++H N +L   A+ ++
Sbjct: 612 SLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRL 671

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
             +D ++ G Y+LLSNIYAN  KW+ V +VR   R RG+ K PG S IEVN+++  F   
Sbjct: 672 FEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTG 731

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           + SHP+  +I   L+ L  K+  +GY PD ++VLQD+E ++KE  +  HSE+LAI FG++
Sbjct: 732 NQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGII 791

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           S      IRI KNLR+CGDCH   K  +++  + IV+RD  R+HHF++G CSCGDYW
Sbjct: 792 STPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW 848



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 144/458 (31%), Positives = 240/458 (52%), Gaps = 28/458 (6%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           +AD  T+  ++K C     + + + +H  V   GF+ + F+   L++M+ +F  +  A+ 
Sbjct: 172 QADFYTFPPVLKAC---QTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARS 228

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           LFD MP R++ SW  MIS         +AL++L  M  EG+  +  T +++L  C  L  
Sbjct: 229 LFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGD 288

Query: 191 LRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           +     +H  +IK G E ++FV +ALI++YAK G L +A+ VF +M  RD+V WNSII  
Sbjct: 289 ISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAA 348

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD---H 304
           + QN D   A   + +M+  G   D  TL S+          +    VH  +++      
Sbjct: 349 YEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLME 408

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
            +++ NA++DMY K G ++ A  VF+ +  KDV+SW+T+ISG  QNG + EA++++  M+
Sbjct: 409 AVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMME 468

Query: 365 VSR-IKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
             R IK N  T V +L A +H G ++ G   H   +K    +D      +C+IDL G+ G
Sbjct: 469 ECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVG--TCLIDLYGKCG 526

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG------T 476
           +L +A+ L +++P E  +V W A++    +H + + A+   +++     QD G      T
Sbjct: 527 RLVDAMCLFYQVPRE-SSVPWNAIISCHGIHGHGEKALKLFREM-----QDEGVKPDHVT 580

Query: 477 YILLSNIYANSQKWDEVAEVRKTMRARGIT---KEPGC 511
           +I L +  ++S   DE       M+  GI    K  GC
Sbjct: 581 FISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGC 618



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 201/367 (54%), Gaps = 18/367 (4%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
           AK +H  ++  G     F+   L+N++     +  ++  FDQ+  ++V +W +MISAY  
Sbjct: 92  AKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVR 151

Query: 153 AKMNDKALELLI-FMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRS 211
                +A++     +L    + + +T+  VL+AC +L+  R++HC + K+GF+ DVFV +
Sbjct: 152 NGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVDGRKIHCWVFKLGFQWDVFVAA 211

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
           +LI +Y++ G +  A  +F++MP RD+  WN++I G  QN +  +AL++   M+  G   
Sbjct: 212 SLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINM 271

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVF 329
           D  T+ S+L  C  L  +   T +H++V+K+  + +L ++NAL++MY K G+L DA  VF
Sbjct: 272 DSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVF 331

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
            +M  +DV+SW+++I+   QN     A   F  M+++ ++P+ +T+V +    + +    
Sbjct: 332 QQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQS---- 387

Query: 390 DGWNHFKSMKKFYGIDPGREHY-------SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
                +K+ +  +G    R          + ++D+  + G +  A K+ + +P + D V+
Sbjct: 388 ---RDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVK-DVVS 443

Query: 443 WRALLGA 449
           W  L+  
Sbjct: 444 WNTLISG 450



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 183/381 (48%), Gaps = 19/381 (4%)

Query: 165 FMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           F  R+  +     ++++  +C   ++ ++LH  ++  G     F+   L+++YA LG++ 
Sbjct: 66  FHWRQPAKNEEIDFNSLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVS 125

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN-LYKRMKRAGFAADQSTLTSVLRAC 283
            +   F+++  +D+  WNS+I  + +N    EA++  Y+ +    F AD  T   VL+AC
Sbjct: 126 LSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC 185

Query: 284 TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
             L     G ++H  V K  +  D+ +  +L+ MY + G +  A S+F  M  +D+ SW+
Sbjct: 186 QTLV---DGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWN 242

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
            MISGL QNG + +AL + + M++  I  + +T+  +L  C+  G +        ++   
Sbjct: 243 AMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTA-----TLIHL 297

Query: 402 YGIDPGREH----YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN-- 455
           Y I  G E      + +I++  + G L +A K+  +M +  D V+W +++ A + + +  
Sbjct: 298 YVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQM-FLRDVVSWNSIIAAYEQNDDPV 356

Query: 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE 515
           T        ++  L+P D  T + L++I A S+ +     V   +  RG   E       
Sbjct: 357 TARGFFFKMQLNGLEP-DLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNA 415

Query: 516 VNKQIHAFNVADSSHPQIDKI 536
           V        V DS+H   + I
Sbjct: 416 VMDMYAKLGVIDSAHKVFNLI 436


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/579 (39%), Positives = 347/579 (59%), Gaps = 5/579 (0%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           +R +   +A +I  C     V E    H + L  G     ++ N L+ M+ + S ++ A 
Sbjct: 125 MRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAM 184

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            ++ ++P  +V S+  +I+   +     +ALE+L  M+ E +  +  TY      C  L 
Sbjct: 185 SVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLK 244

Query: 190 ILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            LR   Q+HC + + G E D FV SA+ID+Y K G + NA  VFN + T+++V W +I+ 
Sbjct: 245 DLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILA 304

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDH 304
            ++QN   +EALN +  M+  G   ++ T   +L +C G++ L  G  +H  + K  ++ 
Sbjct: 305 AYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFED 364

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
            +I+ NAL++MY K GS+E A  VF  MI +D I+WS MI GL+ +G  +EAL +F+ M 
Sbjct: 365 HIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEML 424

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
            ++  P+Y+T VGVL AC+H G V++G+ +   + K  GI+PG EHY+C++ LL +AG+L
Sbjct: 425 AAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRL 484

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484
            EA   +   P + D V WR LL AC VH+N  L    A+ +L +DP D GTYILLSN+Y
Sbjct: 485 DEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMY 544

Query: 485 ANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLI 544
           A +++WD V ++RK MR R + KEPG SWIE+   IH F     +HP+ ++I + ++ L+
Sbjct: 545 AKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQIYEKVQELL 604

Query: 545 QKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICG 604
             +  +GY PD   V  D+E EQK + + YHSEKLAI +GLM    G  IR+ KNLR+C 
Sbjct: 605 TMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIRVIKNLRMCV 664

Query: 605 DCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           DCH+  KL +K+ N+ I++RD  R+H F DG CSC DYW
Sbjct: 665 DCHSAVKLISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 227/444 (51%), Gaps = 18/444 (4%)

Query: 79  ELIKCCLARHAVEEAKLVHNHVL--SGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           +L+K       ++  K++H H++  +   +     VN L+N++ K   +  A++LFD M 
Sbjct: 30  QLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMR 89

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLR-EGVRPNMFTYSAVLRAC-DSLIILR-- 192
           +RNVVSW  +++ Y    +  + L L   M+  + +RPN + ++ ++ +C DS  ++   
Sbjct: 90  KRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGW 149

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           Q H   +K G     +V++ALI +Y++  +++ A  V+ E+P  D+  +N II G  +N 
Sbjct: 150 QCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENG 209

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNN 310
              EAL +  RM       D  T  +    C+ L  L LG QVH  + +   ++D  +++
Sbjct: 210 YPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSS 269

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           A++DMY KCG++ +A  VF+R+  K+V+SW+ +++  +QNG  +EAL  F  M+V  + P
Sbjct: 270 AIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLP 329

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           N  T   +L +C+    +  G      +KK  G +      + +I++  ++G ++ A K+
Sbjct: 330 NEYTFAVLLNSCAGISALGHGKLLHTRIKK-SGFEDHIIVGNALINMYSKSGSIEAAHKV 388

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
             EM    D++TW A++     H     A+   +++  L  ++   Y+    + +     
Sbjct: 389 FLEMICR-DSITWSAMICGLSHHGLGREALVVFQEM--LAAKECPHYVTFVGVLSACAHL 445

Query: 491 DEVAE----VRKTMRARGITKEPG 510
             V E    + + M+  GI  EPG
Sbjct: 446 GSVQEGFYYLNQLMKQTGI--EPG 467



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 11/218 (5%)

Query: 36  TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL 95
           T+N  S       +        A+     M+  G+  +  T+A L+  C    A+   KL
Sbjct: 293 TKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKL 352

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  +   GFE    + N L+NM+ K   +E A  +F +M  R+ ++W+ MI       +
Sbjct: 353 LHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGL 412

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRAC-------DSLIILRQLHCGIIKVGFESDVF 208
             +AL +   ML     P+  T+  VL AC       +    L QL   + + G E  V 
Sbjct: 413 GREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQL---MKQTGIEPGVE 469

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSII 245
             + ++ +  K G L  AE      P + D+V W +++
Sbjct: 470 HYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLL 507


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/586 (38%), Positives = 365/586 (62%), Gaps = 8/586 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ   V  DS T+  L+K C     ++  + VH  V   GF+ + F+ N L+ ++ K   
Sbjct: 110 MQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRR 169

Query: 125 LEEAQVLFD--QMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
           L  A+ +F+   +PER +VSWT ++SAY       +ALE+   M +  V+P+     +VL
Sbjct: 170 LGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVL 229

Query: 183 RACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
            A   L  L+Q   +H  ++K+G E +  +  +L  +YAK G++  A+ +F++M + +L+
Sbjct: 230 NAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLI 289

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
           +WN++I G+A+N    EA++++  M       D  ++TS + AC  +  LE    ++ +V
Sbjct: 290 LWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYV 349

Query: 300 LKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
            + D+  D+ +++AL+DM+ KCGS+E A  VF R + +DV+ WS MI G   +G ++EA+
Sbjct: 350 GRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAI 409

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
            L+ +M+   + PN +T +G+L AC+H+G V +GW  F  M   + I+P ++HY+C+IDL
Sbjct: 410 SLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACVIDL 468

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           LGRAG L +A ++I  MP +P    W ALL ACK HR+ +L   AA+++ ++DP + G Y
Sbjct: 469 LGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHY 528

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           + LSN+YA ++ WD VAEVR  M+ +G+ K+ GCSW+EV  ++ AF V D SHP+ ++I 
Sbjct: 529 VQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIE 588

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
           + ++ +  +L   G+  + +  L DL  E+ E+++  HSE++AI +GL+S  QG  +RI 
Sbjct: 589 RQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRIT 648

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLR C +CH   KL +K+ ++ IV+RD  R+HHF+DG CSCGDYW
Sbjct: 649 KNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/404 (31%), Positives = 208/404 (51%), Gaps = 23/404 (5%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+ +DS  YA LI    A H  +  K +H  +L  G +   FL+  L++    F  +  A
Sbjct: 17  GIHSDSF-YASLIDS--ATHKAQ-LKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFA 72

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +FD +P   +  W  +I  Y        AL +   M    V P+ FT+  +L+AC  L
Sbjct: 73  RQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGL 132

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN--EMPTRDLVVWNS 243
             L   R +H  + ++GF++DVFV++ LI +YAK   L +A  VF    +P R +V W +
Sbjct: 133 SHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTA 192

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY- 302
           I+  +AQN +  EAL ++ +M++     D   L SVL A T L  L+ G  +H  V+K  
Sbjct: 193 IVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMG 252

Query: 303 ---DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
              + DL++  +L  MY KCG +  A  +F +M   ++I W+ MISG A+NGY++EA+ +
Sbjct: 253 LEIEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDM 310

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY---SCMID 416
           F  M    ++P+ I+I   + AC+  G +E      +SM ++ G    R+     S +ID
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVGSLEQA----RSMYEYVGRSDYRDDVFISSALID 366

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           +  + G + E  +L+ +   + D V W A++    +H     AI
Sbjct: 367 MFAKCGSV-EGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAI 409



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 173/323 (53%), Gaps = 8/323 (2%)

Query: 170 GVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           G+  + F Y++++ +      L+Q+H  ++ +G +   F+ + LI   +  G++  A  V
Sbjct: 17  GIHSDSF-YASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQV 75

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F+++P   +  WN+II G+++N+   +AL +Y  M+ A  + D  T   +L+AC+GL+ L
Sbjct: 76  FDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHL 135

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS--RMIQKDVISWSTMIS 345
           ++G  VH  V +  +D D+ + N L+ +Y KC  L  A +VF    + ++ ++SW+ ++S
Sbjct: 136 QMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVS 195

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
             AQNG   EAL++F  M+   +KP+++ +V VL A +    ++ G +   S+ K  G++
Sbjct: 196 AYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKM-GLE 254

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
              +    +  +  + G++  A  L  +M   P+ + W A++     +     AI    +
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISGYAKNGYAREAIDMFHE 313

Query: 466 ILNLDPQDPGTYILLSNIYANSQ 488
           ++N D + P T  + S I A +Q
Sbjct: 314 MINKDVR-PDTISITSAISACAQ 335



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 143/297 (48%), Gaps = 10/297 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+   V+ D V    ++        +++ + +H  V+  G E E  L+  L  
Sbjct: 206 ALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNT 265

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +  A++LFD+M   N++ W  MIS Y       +A+++   M+ + VRP+  +
Sbjct: 266 MYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTIS 325

Query: 178 YSAVLRACDSLIILRQLHCGIIKVG---FESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            ++ + AC  +  L Q       VG   +  DVF+ SALID++AK G +  A  VF+   
Sbjct: 326 ITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTL 385

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD+VVW+++I G+  +    EA++LY+ M+R G   +  T   +L AC    ++  G  
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445

Query: 295 VHVHVLKYDHDLILNN----ALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
               +   DH +         ++D+  + G L+ A  V   M +Q  V  W  ++S 
Sbjct: 446 FFNRMA--DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSA 500


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/595 (38%), Positives = 365/595 (61%), Gaps = 21/595 (3%)

Query: 70  VRADSVTYAELIKCCLARHAVEEA----------------KLVHNHVLSGGFEPETFLVN 113
           VR D+V +  ++ C       E A                + +H   +    + E  +  
Sbjct: 224 VRKDAVVWTAMVSCYSENDCPENAFRCAQSCSLLAISCARQGIHGCAIKTLNDTEPHVGG 283

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            LL+M+ K   +++A++ F+ +P  +V+  + MIS Y  +  N++A EL + ++R  V P
Sbjct: 284 ALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLP 343

Query: 174 NMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           N ++ S+VL+AC +++ L   +Q+H   IK+G ESD+FV +AL+D YAK  ++ ++  +F
Sbjct: 344 NEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIF 403

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           + +   + V WN+I+ GF+Q+   +EAL+++  M+ A     Q T +SVLRAC   A + 
Sbjct: 404 SSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIR 463

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
              Q+H  + K  +++D ++ N+L+D Y KCG + DA+ VF  ++++D+ISW+ +ISG A
Sbjct: 464 HAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYA 523

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
            +G + +AL+LF+ M  S ++ N IT V +L  C   G V  G + F SM+  +GI P  
Sbjct: 524 LHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSM 583

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           EHY+C++ LLGRAG+L +A++ I ++P  P A+ WRALL +C +H+N  L   +A+KIL 
Sbjct: 584 EHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILE 643

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           ++PQD  TY+LLSN+YA +   D+VA +RK+MR  G+ K PG SW+E+  +IHAF+V   
Sbjct: 644 IEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSV 703

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
            HP +  IN  L+ L  K    GY PD N VL D++ EQK   +  HSE+LA+ +GL+  
Sbjct: 704 DHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMT 763

Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             G  IRI KNLR C DCHT   + +K+  + I++RD  R+HHF+DG CSCGDYW
Sbjct: 764 PPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 818



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/423 (26%), Positives = 208/423 (49%), Gaps = 28/423 (6%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN  S +        + D   A      ++  G   +      ++K  +A  A   A  V
Sbjct: 125 RNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGV 184

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H+     G +   F+ + L++ +   SL+ +A+ +F+ +  ++ V WT M+S Y +    
Sbjct: 185 HSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCP 244

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLII--LRQ-LHCGIIKVGFESDVFVRSAL 213
           + A                       ++C  L I   RQ +H   IK   +++  V  AL
Sbjct: 245 ENAFR-------------------CAQSCSLLAISCARQGIHGCAIKTLNDTEPHVGGAL 285

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           +D+YAK G++++A   F  +P  D+++ + +I  +AQ++  ++A  L+ R+ R+    ++
Sbjct: 286 LDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNE 345

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSR 331
            +L+SVL+ACT +  L+ G Q+H H +K  H  DL + NAL+D Y KC  ++ ++ +FS 
Sbjct: 346 YSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSS 405

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC-SHAGFVED 390
           +   + +SW+T++ G +Q+G  +EAL +F  M+ +++    +T   VL AC S A     
Sbjct: 406 LRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHA 465

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G  H    K  +  D    +   +ID   + G +++A+K+   +  E D ++W A++   
Sbjct: 466 GQIHCSIEKSTFNNDTVIGN--SLIDTYAKCGYIRDALKVFQHL-MERDIISWNAIISGY 522

Query: 451 KVH 453
            +H
Sbjct: 523 ALH 525



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/319 (31%), Positives = 160/319 (50%), Gaps = 26/319 (8%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVL--SGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           DS   A  ++ C+AR      + VH HV+   G    + F  N+LLNM+ K   L  A+ 
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR---ACDS 187
           LFD+MPERN+VS+ T++ A+      + A  L   +  EG   N F  + +L+   A D+
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDA 177

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
             +   +H    K+G + + FV S LID Y+    + +AE VFN +  +D VVW +++  
Sbjct: 178 AGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSC 237

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHD 305
           +++N   + A           F   QS        C+ LA+      +H   +K   D +
Sbjct: 238 YSENDCPENA-----------FRCAQS--------CSLLAISCARQGIHGCAIKTLNDTE 278

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
             +  ALLDMY KCG ++DA   F  +   DVI  S MIS  AQ+  +++A +LF  +  
Sbjct: 279 PHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMR 338

Query: 366 SRIKPNYITIVGVLFACSH 384
           S + PN  ++  VL AC++
Sbjct: 339 SSVLPNEYSLSSVLQACTN 357



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 122/250 (48%), Gaps = 24/250 (9%)

Query: 192 RQLHCGIIKVGFES--DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           R +H  +++ G     D+F  + L+++Y KLG L +A  +F+ MP R++V + +++   A
Sbjct: 79  RAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHA 138

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLI 307
           Q  D + A  L++R++  G   +Q  LT++L+    +    L   VH     L +DH+  
Sbjct: 139 QRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAF 198

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + + L+D Y  C  + DA  VF+ +++KD + W+ M+S  ++N   + A +  +S  +  
Sbjct: 199 VGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRCAQSCSLLA 258

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           I            +C+  G       H  ++K     +P       ++D+  + G +++A
Sbjct: 259 I------------SCARQGI------HGCAIKTLNDTEP--HVGGALLDMYAKCGDIKDA 298

Query: 428 VKLIHEMPYE 437
                 +PY+
Sbjct: 299 RLAFEMIPYD 308


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/585 (41%), Positives = 359/585 (61%), Gaps = 16/585 (2%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D  T + +I  C     V   + +H  V+  G +    + N +L  + +   L EA+ +F
Sbjct: 140 DGFTLSGVITAC--GDDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVF 197

Query: 133 DQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA---CD 186
            +M E   R+ VSW  MI A    +   +A+ L   M+R G++ +MFT ++VL A     
Sbjct: 198 REMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVK 257

Query: 187 SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKL-GELRNAECVFNEMPTRDLVVWNSII 245
            L+  RQ H  +IK GF  +  V S LID+Y+K  G +     VF E+   DLV+WN++I
Sbjct: 258 DLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMI 317

Query: 246 GGFAQNSDVDE-ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD- 303
            GF+   D+ E  L  ++ M+R GF  D  +   V  AC+ L+   LG QVH   +K D 
Sbjct: 318 SGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDV 377

Query: 304 --HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
             + + +NNAL+ MY KCG++ DA  VF  M + + +S ++MI+G AQ+G   E+L+LFE
Sbjct: 378 PYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFE 437

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            M    I PN IT + VL AC H G VE+G  +F  MK+ + I+P  EHYSCMIDLLGRA
Sbjct: 438 LMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRA 497

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           GKL+EA ++I  MP+ P ++ W  LLGAC+ H N +LA+ AA + L L+P +   Y++LS
Sbjct: 498 GKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLS 557

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
           N+YA++ +W+E A V++ MR RG+ K+PGCSWIE++K++H F   D+SHP I +I+ ++ 
Sbjct: 558 NMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMG 617

Query: 542 HLIQKLVGVGYAPDTNYVL---QDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRK 598
            +++K+   GY PD  + L   +++E +++E  + YHSEKLA+ FGL+S  +G  I + K
Sbjct: 618 KMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLYHSEKLAVAFGLISTEEGVPILVVK 677

Query: 599 NLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           NLRICGDCH   KL + +  + I +RD  R+H F++G+CSC DYW
Sbjct: 678 NLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEGHCSCRDYW 722



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 158/288 (54%), Gaps = 12/288 (4%)

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL--I 164
           P  F  N L+N + K SL+  A+ +FD++P+ ++VS+ T+I+AY D       L L   +
Sbjct: 73  PNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEV 132

Query: 165 FMLREGVRPNMFTYSAVLRAC-DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
             LR G+  + FT S V+ AC D + ++RQLHC ++  G +    V +A++  Y++ G L
Sbjct: 133 RELRLGL--DGFTLSGVITACGDDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFL 190

Query: 224 RNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
             A  VF EM     RD V WN++I    Q+ +  EA+ L++ M R G   D  T+ SVL
Sbjct: 191 SEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVL 250

Query: 281 RACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKC-GSLEDAMSVFSRMIQKDV 337
            A T +  L  G Q H  ++K  +  +  + + L+D+Y KC GS+ +   VF  +   D+
Sbjct: 251 TAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDL 310

Query: 338 ISWSTMISGLA-QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           + W+TMISG +     S++ L  F  M+ +  +P+  + V V  ACS+
Sbjct: 311 VLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSN 358



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 123/260 (47%), Gaps = 18/260 (6%)

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           +VF  + LI+ YAK   +  A  VF+E+P  D+V +N++I  +A   +    L L++ ++
Sbjct: 74  NVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVR 133

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNALLDMYCKCGSLE 323
                 D  TL+ V+ AC     + L  Q+H  V+   HD    +NNA+L  Y + G L 
Sbjct: 134 ELRLGLDGFTLSGVITACGD--DVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLS 191

Query: 324 DAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL- 379
           +A  VF  M +   +D +SW+ MI    Q+    EA+ LF  M    +K +  T+  VL 
Sbjct: 192 EARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLT 251

Query: 380 -FACSHAGFVED--GWNHFKSMKKFYGIDPGREHYSCMIDLLGR-AGKLQEAVKLIHEMP 435
            F C     V+D  G   F  M    G        S +IDL  + AG + E  K+  E+ 
Sbjct: 252 AFTC-----VKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEIT 306

Query: 436 YEPDAVTWRALLGACKVHRN 455
             PD V W  ++    ++ +
Sbjct: 307 -APDLVLWNTMISGFSLYED 325


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/656 (37%), Positives = 388/656 (59%), Gaps = 25/656 (3%)

Query: 5   AVSKLKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHA 64
           +VS+L  T+  ++ +  +      V   +  + NS  ++ D  R     D   A+ A  +
Sbjct: 12  SVSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNS--VIADLAR---SGDSAEALLAFSS 66

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+   +     ++   IK C +   +   K  H      G++ + F+ + L+ M+     
Sbjct: 67  MRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGK 126

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN-----MFTYS 179
           LE+A+ +FD++P+R++VSWT+MI  Y    +N  AL+ +       V  N     MF  S
Sbjct: 127 LEDARKVFDEIPKRDIVSWTSMIRGY---DLNGNALDAVSLFKDLLVDENDDDDAMFLDS 183

Query: 180 ----AVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE--LRNAECVF 230
               +V+ AC  +    +   +H  +IK GF+  V V + L+D YAK GE  +  A  +F
Sbjct: 184 MGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIF 243

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALL 289
           +++  +D V +NSI+  +AQ+   +EA  +++R+ K      +  TL++VL A +    L
Sbjct: 244 DQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGAL 303

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
            +G  +H  V++   + D+I+  +++DMYCKCG +E A   F RM  K+V SW+ MI+G 
Sbjct: 304 RIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGY 363

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
             +G++ +AL+LF +M  S ++PNYIT V VL ACSHAG   +GW  F +MK  +G++PG
Sbjct: 364 GMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPG 423

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            EHY CM+DLLGRAG LQ+A  LI  M  +PD++ W +LL AC++H+N +LA  +  ++ 
Sbjct: 424 LEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLF 483

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
            LD  + G Y+LLS+IYA++ +W +V  VR  M+ RG+ K PG S +E+N ++H F + D
Sbjct: 484 ELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGD 543

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
             HPQ +KI + L  L +KL+  GY  +T+ V  D++ E+KE +++ HSEKLAI FG+M+
Sbjct: 544 EEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMN 603

Query: 588 LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
              G T+ + KNLR+C DCH   KL +K+ ++  V+RD  R+HHF+DG CSCGDYW
Sbjct: 604 TVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/618 (39%), Positives = 346/618 (55%), Gaps = 39/618 (6%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMH----- 119
           M   G   +  T+  + K C       E K VH HVL  G E   F+   L+NM+     
Sbjct: 119 MISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGE 178

Query: 120 ----------------VKFS----------LLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
                           V F+           L+EA+ LFD++P R+VVSW  MIS Y  +
Sbjct: 179 LVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQS 238

Query: 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRAC----DSLIILRQLHCGIIKVGFESDVFV 209
              ++A+     M R  V PN+ T  +VL AC     SL +   +   I   G  S++ +
Sbjct: 239 GRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRL 298

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
            + LID+Y K G+L  A  +F ++  +++V WN +IGG+   S   EAL L++RM ++  
Sbjct: 299 VNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNI 358

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK----YDHDLILNNALLDMYCKCGSLEDA 325
             +  T  S+L AC  L  L+LG  VH +V K      + + L  +L+DMY KCG L  A
Sbjct: 359 DPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVA 418

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F  M  K + +W+ MISG A +G++  AL LF  M      P+ IT VGVL AC HA
Sbjct: 419 KRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHA 478

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G +  G  +F SM + Y + P   HY CMIDL GRAG   EA  L+  M  +PD   W +
Sbjct: 479 GLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCS 538

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LLGAC++HR  +LA   AK +  L+P++P  Y+LLSNIYA + +W++VA++R  +    +
Sbjct: 539 LLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRM 598

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            K PGCS IEV+  +H F V D  HPQ ++I K L  +  +L   G+ PDT+ VL D++ 
Sbjct: 599 KKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDE 658

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           E KE  + +HSEKLAI FGL+S   G TIRI KNLR+CG+CH+  KL +K+ N+ I+ RD
Sbjct: 659 EWKEGVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCGNCHSATKLISKIFNREIIARD 718

Query: 626 PIRYHHFQDGNCSCGDYW 643
             R+HHF+DG+CSC DYW
Sbjct: 719 RNRFHHFKDGSCSCKDYW 736



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 125/417 (29%), Positives = 207/417 (49%), Gaps = 53/417 (12%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQMPERNVVSWTTMI 147
           ++  K +H+ ++  G     F ++ L+          L  A  LF  +   N V W  MI
Sbjct: 41  LQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMI 100

Query: 148 SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFE 204
                ++    ALE  + M+  G  PN +T+ ++ ++C  +      +Q+H  ++K+G E
Sbjct: 101 RGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLE 160

Query: 205 SDVFVRSALIDIYAKLGELRNAECV-------------------------------FNEM 233
            + FV ++LI++YA+ GEL NA  V                               F+E+
Sbjct: 161 HNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEI 220

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT-GLALLELG 292
           P RD+V WN++I G+AQ+  V+EA+  ++ M+RA    + ST+ SVL AC    + L+LG
Sbjct: 221 PVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLG 280

Query: 293 TQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
             V   +       ++ L N L+DMY KCG LE+A ++F ++  K+V+SW+ MI G    
Sbjct: 281 NWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHM 340

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNH------FKSMKKFYG 403
              +EAL LF  M  S I PN +T + +L AC++ G ++ G W H       KSMK    
Sbjct: 341 SCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVA 400

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           +      ++ +ID+  + G L  A ++   M  +  A TW A++    +H +TD A+
Sbjct: 401 L------WTSLIDMYAKCGDLAVAKRIFDCMNTKSLA-TWNAMISGFAMHGHTDTAL 450



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 161/330 (48%), Gaps = 38/330 (11%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRDL 238
           +L  C +L  L+Q+H  IIK G  +  F  S LI+  A    G+L  A  +F  +   + 
Sbjct: 34  LLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNH 93

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           V+WN +I G + +     AL  Y  M  +G   ++ T  S+ ++CT +     G QVH H
Sbjct: 94  VIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAH 153

Query: 299 VLK--YDHDLILNNALLDMYCKCG------------SLEDAMS----------------- 327
           VLK   +H+  ++ +L++MY + G            S+ DA+S                 
Sbjct: 154 VLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEA 213

Query: 328 --VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F  +  +DV+SW+ MISG AQ+G  +EA+  FE M+ +++ PN  T++ VL AC+ +
Sbjct: 214 RELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQS 273

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G      N  +S  +  G+       + +ID+  + G L+EA  L  ++  + + V+W  
Sbjct: 274 GSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQ-DKNVVSWNV 332

Query: 446 LLGACKVHRNTDLAICAAKKIL--NLDPQD 473
           ++G          A+   ++++  N+DP D
Sbjct: 333 MIGGYTHMSCYKEALGLFRRMMQSNIDPND 362


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/570 (40%), Positives = 356/570 (62%), Gaps = 6/570 (1%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139
           L++ C    +    +  H  ++  G E +    N+L+NM+ K SL++ A+  F++MP ++
Sbjct: 49  LLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKS 108

Query: 140 VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHC 196
           +VSW T+I A      + +AL+LLI M REG   N FT S+VL  C    +++   QLH 
Sbjct: 109 LVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHA 168

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
             IK   +S+ FV +AL+ +YAK   +++A  +F  MP ++ V W+S++ G+ QN   +E
Sbjct: 169 FSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEE 228

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV--HVLKYDHDLILNNALLD 314
           AL +++  +  GF  D   ++S + AC GLA L  G QVH   H   +  ++ ++++L+D
Sbjct: 229 ALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLID 288

Query: 315 MYCKCGSLEDAMSVFSRMIQ-KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           MY KCG + +A  VF  +++ + ++ W+ MISG A++  + EA+ LFE M+     P+ +
Sbjct: 289 MYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDV 348

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
           T V VL ACSH G  E+G  +F  M + + + P   HYSCMID+LGRAG + +A  LI  
Sbjct: 349 TYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIER 408

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
           MP+   +  W +LL +CK++ N + A  AAK +  ++P + G +ILL+NIYA ++KWDEV
Sbjct: 409 MPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAANKKWDEV 468

Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYA 553
           A  RK +R   + KE G SWIE+  +IH+F V + +HPQID I   L +L+ +L  + Y 
Sbjct: 469 ARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLVVELKKLNYK 528

Query: 554 PDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLT 613
            DT+  L D+E  +K+  +++HSEKLAI FGLM L +   IRI KNLRICGDCHTF KL 
Sbjct: 529 VDTSNDLHDVEENRKQMLLRHHSEKLAITFGLMCLPRDIPIRIIKNLRICGDCHTFMKLV 588

Query: 614 AKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +K  ++ I++RD  R+HHF+DG CSCG++W
Sbjct: 589 SKSTSREIIVRDTNRFHHFKDGFCSCGEFW 618



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 153/283 (54%), Gaps = 9/283 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+K +  MQ  G   +  T + ++  C  + A+ E   +H   +    +   F+   LL+
Sbjct: 128 ALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLH 187

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++ K S +++A  +F+ MPE+N V+W++M++ Y     +++AL +       G   + F 
Sbjct: 188 VYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFM 247

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE-M 233
            S+ + AC  L  L   +Q+H    K GF S+++V S+LID+YAK G +R A  VF   +
Sbjct: 248 ISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVL 307

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             R +V+WN++I GFA+++   EA+ L+++M++ GF  D  T   VL AC+ + L E G 
Sbjct: 308 EVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEG- 366

Query: 294 QVHVHVLKYDHDL----ILNNALLDMYCKCGSLEDAMSVFSRM 332
           Q +  ++   H+L    +  + ++D+  + G +  A  +  RM
Sbjct: 367 QKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERM 409


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/579 (39%), Positives = 351/579 (60%), Gaps = 6/579 (1%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA-Q 129
           + D+ T   +IK C     +   +++H          + F+ N L+ M+ K  L+EEA +
Sbjct: 205 KPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVK 264

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            +FD M  + V SW  ++  Y       KAL+L + M   G+ P+ FT  ++L AC  + 
Sbjct: 265 RVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMK 324

Query: 190 IL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            L    ++H   ++ G   D F+  +L+ +Y   G+   A+ +F+ M  R LV WN +I 
Sbjct: 325 SLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIA 384

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDH 304
           G++QN   DEA+NL+++M   G    +  +  V  AC+ L+ L LG ++H   LK     
Sbjct: 385 GYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTE 444

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           D+ ++++++DMY K G +  +  +F R+ +KDV SW+ +I+G   +G  +EAL+LFE M 
Sbjct: 445 DIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKML 504

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
              +KP+  T  G+L ACSHAG VEDG  +F  M   + I+P  EHY+C++D+LGRAG++
Sbjct: 505 RLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRI 564

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484
            +A++LI EMP +PD+  W +LL +C++H N  L    A K+L L+P+ P  Y+L+SN++
Sbjct: 565 DDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLF 624

Query: 485 ANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLI 544
           A S KWD+V  VR  M+  G+ K+ GCSWIEV  ++H F + D   P+++++ +  + L 
Sbjct: 625 AGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLE 684

Query: 545 QKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICG 604
            K+  +GY PDT  VL DLE E K   ++ HSEKLAI FGL++  +G  +R+ KNLRICG
Sbjct: 685 VKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICG 744

Query: 605 DCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           DCH  AK  +K+ N+ IV+RD  R+HHF+DG CSCGDYW
Sbjct: 745 DCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 131/474 (27%), Positives = 232/474 (48%), Gaps = 24/474 (5%)

Query: 15  SSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADS 74
           S+Q RQ     T  ++  N+ T    S L +  + C   +L  A+  +   +   V  DS
Sbjct: 48  SAQTRQ-----TKSLSFANSSTNRQFSSLHEIKKLCESGNLKEALDFLQR-ESDDVVLDS 101

Query: 75  VTYAE----LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI-LLNMHVKFSLLEEAQ 129
              +E    L++ C  R  +E  + +H  V +       F++N  ++ M+       +++
Sbjct: 102 AQRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSR 161

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR-EGVRPNMFTYSAVLRACDSL 188
           ++FD++  +N+  W  ++SAY   ++ + A+ +   ++     +P+ FT   V++AC  L
Sbjct: 162 MVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGL 221

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA-ECVFNEMPTRDLVVWNSI 244
           + L   + +H    K+   SDVFV +ALI +Y K G +  A + VF+ M T+ +  WN++
Sbjct: 222 LDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNAL 281

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
           + G+AQNSD  +AL+LY +M  +G   D  T+ S+L AC+ +  L  G ++H   L+   
Sbjct: 282 LCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGL 341

Query: 305 --DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
             D  +  +LL +Y  CG    A  +F  M  + ++SW+ MI+G +QNG   EA+ LF  
Sbjct: 342 AVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQ 401

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRA 421
           M    I+P  I I+ V  ACS    +  G   H  ++K     D      S +ID+  + 
Sbjct: 402 MLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVS--SSIIDMYAKG 459

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI--LNLDPQD 473
           G +  + ++   +  E D  +W  ++    +H     A+   +K+  L L P D
Sbjct: 460 GCIGLSQRIFDRL-REKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDD 512



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 174/376 (46%), Gaps = 24/376 (6%)

Query: 19  RQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYA 78
           R F L  T  V+S N +             +    D  +A+     M   G+  D  T  
Sbjct: 265 RVFDLMDTKTVSSWNAL----------LCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIG 314

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
            L+  C    ++   + +H   L  G   + F+   LL++++       AQVLFD M  R
Sbjct: 315 SLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHR 374

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLH 195
           ++VSW  MI+ Y    + D+A+ L   ML +G++P       V  AC  L  LR   +LH
Sbjct: 375 SLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELH 434

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
           C  +K     D+FV S++ID+YAK G +  ++ +F+ +  +D+  WN II G+  +    
Sbjct: 435 CFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGK 494

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY---DHDLILNNAL 312
           EAL L+++M R G   D  T T +L AC+   L+E G +    +L     +  L     +
Sbjct: 495 EALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCV 554

Query: 313 LDMYCKCGSLEDAMSVFSRMI-QKDVISWSTMISGLAQNGY----SQEALKLFESMKVSR 367
           +DM  + G ++DA+ +   M    D   WS+++S    +G      + A KL E   +  
Sbjct: 555 VDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLE---LEP 611

Query: 368 IKPNYITIVGVLFACS 383
            KP    ++  LFA S
Sbjct: 612 EKPENYVLISNLFAGS 627


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/553 (41%), Positives = 343/553 (62%), Gaps = 5/553 (0%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  ++    + + ++   L++M+ K+ LL++A+ +F+ +P ++++ W  +IS       
Sbjct: 327 IHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGC 386

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSA 212
           + ++L L   M +EG   N  T +AVL++  SL  +    Q+H    K+GF SD  V + 
Sbjct: 387 HGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNG 446

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           LID Y K   LR A  VF E  + +++ + S+I   +Q    ++A+ L+  M R G   D
Sbjct: 447 LIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPD 506

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
              L+S+L AC  L+  E G QVH H++K  +  D+   NAL+  Y KCGS+EDA   FS
Sbjct: 507 PFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFS 566

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            +  K V+SWS MI GLAQ+G+ + AL +F  M   RI PN+IT+  VL AC+HAG V++
Sbjct: 567 GLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDE 626

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
              +F SMK+ +GID   EHYSCMIDLLGRAGKL +A++L++ MP+E +A  W ALL A 
Sbjct: 627 AKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAAS 686

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
           +VHR+ +L   AA+K+  L+P+  GT++LL+N YA++  WDEVA+VRK M+   + KEP 
Sbjct: 687 RVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPA 746

Query: 511 CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKED 570
            SW+E+  ++H F V D SHP+   I   L+ L   +   GY P+    L D++  +KE 
Sbjct: 747 MSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKSEKEL 806

Query: 571 SIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYH 630
            + +HSE+LA+ F L+S   G  IR++KNLRIC DCH   K  +K+ ++ I+IRD  R+H
Sbjct: 807 LLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFH 866

Query: 631 HFQDGNCSCGDYW 643
           HF DG CSCGDYW
Sbjct: 867 HFSDGACSCGDYW 879



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 153/482 (31%), Positives = 234/482 (48%), Gaps = 62/482 (12%)

Query: 14  PSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPR-AMKAMHAMQCHGVRA 72
           P S  R F  T  P    C+    + SSL+  ++       LPR A+ A  AM+  GVR 
Sbjct: 53  PGSARRVFDETPDP----CHV---SWSSLVTAYS----NNALPREALAAFRAMRARGVRC 101

Query: 73  DSVTYAELIKCCLARHAVEEAKL---VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           +      ++KC        +A L   VH   +S G   + F+ N L+ M+  F  ++EA+
Sbjct: 102 NEFALPIVLKC------APDAGLGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEAR 155

Query: 130 VLFDQMP-ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS- 187
            +FD+   +RN VSW  M+SA+        A+EL   M+  GVRPN F +S V+ AC   
Sbjct: 156 RVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGS 215

Query: 188 --LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             L   R++H  +++ G++ DVF  +AL+D+Y+KLG++  A  VF ++P  D+V WN+ I
Sbjct: 216 RDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFI 275

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT--QVHVHVLK-- 301
            G   +     AL L  +MK +G   +  TL+S+L+AC G          Q+H  ++K  
Sbjct: 276 SGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKAC 335

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
            D D  +  AL+DMY K G L+DA  VF  + +KD++ W+ +ISG +  G   E+L LF 
Sbjct: 336 ADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFC 395

Query: 362 SMKVSRIKPNYITIVGVLFACS-----------HA-----GFVEDGW-------NHFKSM 398
            M+      N  T+  VL + +           HA     GF+ D         +++K  
Sbjct: 396 RMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCN 455

Query: 399 KKFYGIDPGREH-------YSCMIDLLGRAGKLQEAVKLIHEM---PYEPDAVTWRALLG 448
              Y      EH       ++ MI  L +    ++A+KL  EM     EPD     +LL 
Sbjct: 456 CLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLN 515

Query: 449 AC 450
           AC
Sbjct: 516 AC 517



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/385 (30%), Positives = 191/385 (49%), Gaps = 21/385 (5%)

Query: 79  ELIKCCLARHAVEEAKL----VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ 134
           E I   L R+A  ++      +H H+L  G        N LL+ + K  L   A+ +FD+
Sbjct: 5   ESISPLLTRYAATQSLFLGAHIHAHLLKSGLLHA--FRNHLLSFYSKCRLPGSARRVFDE 62

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQL 194
            P+   VSW+++++AY +  +  +AL     M   GVR N F    VL+      +  Q+
Sbjct: 63  TPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGLGVQV 122

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP-TRDLVVWNSIIGGFAQNSD 253
           H   +  G   D+FV +AL+ +Y   G +  A  VF+E    R+ V WN ++  F +N  
Sbjct: 123 HAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDR 182

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNA 311
             +A+ L+  M  +G   ++   + V+ ACTG   LE G +VH  V++  YD D+   NA
Sbjct: 183 CSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANA 242

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+DMY K G +  A  VF ++ + DV+SW+  ISG   +G+ Q AL+L   MK S + PN
Sbjct: 243 LVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPN 302

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI------DPGREHYSCMIDLLGRAGKLQ 425
             T+  +L AC+ AG        F   ++ +G       D        ++D+  + G L 
Sbjct: 303 VFTLSSILKACAGAGAGA-----FALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLD 357

Query: 426 EAVKLIHEMPYEPDAVTWRALLGAC 450
           +A K+   +P + D + W AL+  C
Sbjct: 358 DARKVFEWIPRK-DLLLWNALISGC 381


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/536 (41%), Positives = 329/536 (61%), Gaps = 5/536 (0%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           NIL   ++K   L  A+ LFD+MPERNV +W  M++   +   ++++L   + M REG+ 
Sbjct: 111 NILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMH 170

Query: 173 PNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P+ F   +V R C  L   +  RQ+H  +++ G + D+ V S+L  +Y + G L+  E V
Sbjct: 171 PDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAV 230

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
              +P+  +V  N+II G  QN D + AL  +  M+  G AAD  T  S + +C+ LA L
Sbjct: 231 LRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAAL 290

Query: 290 ELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
             G Q+H  V+K   D ++     L+ MY +CG L D+  VF      D    S MIS  
Sbjct: 291 AQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAY 350

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
             +G+ Q+A++LF+ M     +P+ +T + +L+ACSH+G  E+G + F+ M K YG+ P 
Sbjct: 351 GFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPS 410

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            +HY+C++DLLGR+G L EA  LI  MP  PD V W+ LL ACK  +N D+A   AK+++
Sbjct: 411 VKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVI 470

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
            LDP D  +Y+LLSNI A S++W +V+EVRK MR   + KEPG SW+E+   IH F   D
Sbjct: 471 ELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGD 530

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
            SHP+  +I++ L+ ++ K+   GY+PD + VL D+E E+KE S+ +HSEKLAI F  +S
Sbjct: 531 ESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLS 590

Query: 588 LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L +G  IR+ KNLR+C DCH   KL +++  + IV+RD  R+HHF+DG CSC DYW
Sbjct: 591 LPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 646



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 162/345 (46%), Gaps = 38/345 (11%)

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           +S + RAC +L  LRQLH      G  +D F  + L+  YA LG+L  A  +F  +P R+
Sbjct: 47  FSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRN 106

Query: 238 LVVWNSIIGGFAQNSDV-------------------------------DEALNLYKRMKR 266
           ++ WN + GG+ +N D+                               +E+L  +  M+R
Sbjct: 107 VMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRR 166

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLED 324
            G   D+  L SV R C GL  +  G QVH +V++   D D+ + ++L  MY +CG L++
Sbjct: 167 EGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQE 226

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
             +V   +    ++S +T+I+G  QNG S+ AL+ F  M+   +  + +T V  + +CS 
Sbjct: 227 GEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSD 286

Query: 385 AGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
              +  G   H + MK   G+D      +C++ +  R G L ++ ++        D    
Sbjct: 287 LAALAQGQQIHGQVMKA--GVDKVVPVMTCLVHMYSRCGCLGDSERVFFGY-CGSDTFLL 343

Query: 444 RALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
            A++ A   H +   AI   K+++N    +P     L+ +YA S 
Sbjct: 344 SAMISAYGFHGHGQKAIELFKQMMN-GGAEPSDVTFLALLYACSH 387



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 15/241 (6%)

Query: 29  VASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARH 88
           + SCNTI    +             D   A++    M+  GV AD VT+   I  C    
Sbjct: 239 IVSCNTIIAGRTQ----------NGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLA 288

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           A+ + + +H  V+  G +    ++  L++M+ +   L +++ +F      +    + MIS
Sbjct: 289 ALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMIS 348

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD-SLIILRQLHCGIIKV---GFE 204
           AY       KA+EL   M+  G  P+  T+ A+L AC  S +    + C  +     G +
Sbjct: 349 AYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQ 408

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMP-TRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
             V   + ++D+  + G L  AE +   MP T D V+W +++       + D A  + KR
Sbjct: 409 PSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKR 468

Query: 264 M 264
           +
Sbjct: 469 V 469


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/576 (41%), Positives = 350/576 (60%), Gaps = 5/576 (0%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D  T A  +K C     ++  + +  + +  G   + F+++ L++M+     +  AQ+LF
Sbjct: 118 DQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLF 177

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---I 189
           D + E  VV W  +I+AY       + +E+   ML  GV  +  T  +V+ AC  +    
Sbjct: 178 DAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAK 237

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           + + +   + + G   +  + +ALID+YAK GEL  A  +F+ M +RD+V W+++I G+ 
Sbjct: 238 LGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYT 297

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--I 307
           Q     EAL L+  M+ A    +  T+ SVL AC  L  LE G  VH ++ +    L  I
Sbjct: 298 QADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTII 357

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           L  AL+D Y KCG ++DA+  F  M  K+  +W+ +I G+A NG  +EAL+LF SM+ + 
Sbjct: 358 LGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKAS 417

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           I+P  +T +GVL ACSH+  VE+G  HF SM + YGI P  EHY C++DLLGRAG + EA
Sbjct: 418 IEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEA 477

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487
            + I  MP EP+AV WRALL +C VH+N ++   A K+I++L+P   G YILLSNIYA+ 
Sbjct: 478 YQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASV 537

Query: 488 QKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL 547
            +W   A +RK M+ RGI K PGCS IE++  +  F   DS HPQ+ +I + ++ +I ++
Sbjct: 538 GQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRI 597

Query: 548 VGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCH 607
              GY P+T  V  +++  +KE S+ +HSEKLAI FGLM L  G TIR+ KNLR+C DCH
Sbjct: 598 KMAGYIPNTADVRLEVDEHEKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCTDCH 657

Query: 608 TFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +  KL +K+ N+ IV+RD  R+HHF+DG CSC DYW
Sbjct: 658 SATKLISKVYNREIVVRDRNRFHHFKDGTCSCNDYW 693



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 143/309 (46%), Gaps = 12/309 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           GV  D +T   ++  C      +  K V  +V   G      L+  L++M+ K   L +A
Sbjct: 215 GVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKA 274

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + LFD M  R+VV+W+ MIS Y  A    +AL L   M    V PN  T  +VL AC  L
Sbjct: 275 RRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVL 334

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             L   + +H  I +      + + +AL+D YAK G + +A   F  MP ++   W ++I
Sbjct: 335 GALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALI 394

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD 305
            G A N    EAL L+  M++A       T   VL AC+   L+E G + H   +  D+ 
Sbjct: 395 KGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRR-HFDSMTQDYG 453

Query: 306 LILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNG---YSQEAL 357
           +         ++D+  + G +++A      M I+ + + W  ++S  A +      +EAL
Sbjct: 454 IKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEAL 513

Query: 358 KLFESMKVS 366
           K   S+  S
Sbjct: 514 KQIVSLNPS 522



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 8/221 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           S+++  +T+    R+   A+     MQ   V  + VT   ++  C    A+E  K VH++
Sbjct: 290 SAMISGYTQADQCRE---ALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSY 346

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           +          L   L++ + K   +++A   F+ MP +N  +WT +I          +A
Sbjct: 347 IRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREA 406

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIIL----RQLHCGIIKVGFESDVFVRSALID 215
           LEL   M +  + P   T+  VL AC    ++    R         G +        ++D
Sbjct: 407 LELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVD 466

Query: 216 IYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVD 255
           +  + G +  A      MP   + V+W +++   A + +V+
Sbjct: 467 LLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVE 507


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/587 (38%), Positives = 363/587 (61%), Gaps = 37/587 (6%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
           A ++  H++   F     L+   ++     SL++ A  +F Q+   N+  +  MI  +  
Sbjct: 38  AYMIRTHIICDVFAASR-LIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRGHSG 96

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFV 209
           +K  D+A    +   R+G+ P+  T+  ++++C  L  +    Q H  IIK GFE DV+V
Sbjct: 97  SKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYV 156

Query: 210 RSALIDIYA-------------------------------KLGELRNAECVFNEMPTRDL 238
           +++L+ +YA                               K G++ +A  +F++MP ++L
Sbjct: 157 QNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNL 216

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           V W+++I G+AQN+  D+A+ L+K ++  G  A+++ + SV+ +C  L  LELG + H +
Sbjct: 217 VTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDY 276

Query: 299 VLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           V+K     +LIL  AL+DMY +CGS++ A+ VF  + ++D +SW+ +I+GLA +GYS+ +
Sbjct: 277 VVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERS 336

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           LK F +M  + + P  IT   VL ACSH G VE G+  F+SMK+ + ++P  EHY CM+D
Sbjct: 337 LKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVD 396

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476
           LLGRAGKL+EA + + +MP +P+A  W ALLGAC++H+N ++     K ++ L PQ  G 
Sbjct: 397 LLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGY 456

Query: 477 YILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKI 536
           Y+LLSNIYAN+++W++V E+R+ M+A+G+ K PG S IE++ ++H F + DSSHP++DKI
Sbjct: 457 YVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHPEMDKI 516

Query: 537 NKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRI 596
            +  + ++ ++   GY  +T   L D++ E+KE ++  HSEKLAI FG+M    G  IRI
Sbjct: 517 ERMWEEILMRIRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIAFGMMRSEAGTPIRI 576

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KNLR+C DCHT  KL +K+  + +++RD  R+HHF+ G CSC DYW
Sbjct: 577 VKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 148/320 (46%), Gaps = 40/320 (12%)

Query: 66  QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL 125
           Q  G+  D++T+  L+K C   H +      H H++  GFE + ++ N L++M+  F   
Sbjct: 111 QRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDT 170

Query: 126 EEAQVLFDQMPERNVVSWTT-------------------------------MISAYCDAK 154
           E A ++F +M   +VVSWT+                               MIS Y    
Sbjct: 171 EAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNN 230

Query: 155 MNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRS 211
             DKA+EL   +  +GVR N     +V+ +C  L  L    + H  ++K G   ++ + +
Sbjct: 231 HFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGT 290

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
           AL+D+YA+ G +  A  VF ++P RD + W ++I G A +   + +L  +  M  AG   
Sbjct: 291 ALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTP 350

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLKYDH----DLILNNALLDMYCKCGSLEDAMS 327
              T T+VL AC+   L+E G Q+    +K DH     L     ++D+  + G LE+A  
Sbjct: 351 RDITFTAVLSACSHGGLVERGFQI-FESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAER 409

Query: 328 VFSRM-IQKDVISWSTMISG 346
              +M ++ +   W  ++  
Sbjct: 410 FVLKMPVKPNAPVWGALLGA 429



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 105/215 (48%), Gaps = 23/215 (10%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++    +Q  GVRA+      +I  C    A+E  +  H++V+  G      L   L+
Sbjct: 234 KAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALV 293

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ +   +++A  +F+ +PER+ +SWT +I+       ++++L+    M+  G+ P   
Sbjct: 294 DMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDI 353

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGF------------ESDVFVRSALIDIYAKLGELR 224
           T++AVL AC         H G+++ GF            E  +     ++D+  + G+L 
Sbjct: 354 TFTAVLSACS--------HGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLE 405

Query: 225 NAECVFNEMPTR-DLVVWNSIIGG--FAQNSDVDE 256
            AE    +MP + +  VW +++G     +N+++ E
Sbjct: 406 EAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGE 440


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/579 (39%), Positives = 357/579 (61%), Gaps = 11/579 (1%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           TY  LI CC  R ++ +A  VH H+L  G + + FL   L+ M+     ++ A+ +FD+ 
Sbjct: 79  TYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT 138

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC-------DSL 188
            +R +  W  +  A   A   ++ L L   M R GV  + FTY+ VL+AC       + L
Sbjct: 139 RKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHL 198

Query: 189 IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
           +  +++H  + + G+ S V++ + L+D+YA+ G +  A  VF  MP R++V W+++I  +
Sbjct: 199 MKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACY 258

Query: 249 AQNSDVDEALNLYKRMKR--AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL 306
           A+N    EAL  ++ M R     + +  T+ SVL+AC  LA LE G  +H ++L+   D 
Sbjct: 259 AKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDS 318

Query: 307 ILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           IL   +AL+ MY +CG LE    VF RM  +DV+SW+++IS    +GY ++A+++FE M 
Sbjct: 319 ILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEML 378

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
            +   P  +T V VL ACSH G VE+G   F++M + +GI P  EHY+CM+DLLGRA +L
Sbjct: 379 ANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRL 438

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484
            EA K++ +M  EP    W +LLG+C++H N +LA  A++++  L+P++ G Y+LL++IY
Sbjct: 439 DEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIY 498

Query: 485 ANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLI 544
           A +Q WDEV  V+K +  RG+ K PG  W+EV +++++F   D  +P +++I+  L  L 
Sbjct: 499 AEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLA 558

Query: 545 QKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICG 604
           + +   GY P T  VL +LE E+KE  +  HSEKLA+ FGL++ ++G+ IRI KNLR+C 
Sbjct: 559 EDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCE 618

Query: 605 DCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           DCH F K  +K   + I++RD  R+H F++G CSCGDYW
Sbjct: 619 DCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 127/236 (53%), Gaps = 9/236 (3%)

Query: 69  GVRADSVTYAELIKCCLARHA----VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           GV +D  TY  ++K C+A       + + K +H H+   G+    +++  L++M+ +F  
Sbjct: 173 GVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGC 232

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE--GVRPNMFTYSAVL 182
           ++ A  +F  MP RNVVSW+ MI+ Y       +AL     M+RE     PN  T  +VL
Sbjct: 233 VDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVL 292

Query: 183 RACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
           +AC SL  L Q   +H  I++ G +S + V SAL+ +Y + G+L   + VF+ M  RD+V
Sbjct: 293 QACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVV 352

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
            WNS+I  +  +    +A+ +++ M   G +    T  SVL AC+   L+E G ++
Sbjct: 353 SWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRL 408



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 21/205 (10%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           +SVT   +++ C +  A+E+ KL+H ++L  G +    +++ L+ M+ +   LE  Q +F
Sbjct: 284 NSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVF 343

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192
           D+M +R+VVSW ++IS+Y       KA+++   ML  G  P   T+ +VL AC       
Sbjct: 344 DRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACS------ 397

Query: 193 QLHCGIIKVG---FES---------DVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLV 239
             H G+++ G   FE+          +   + ++D+  +   L  A  +  +M T     
Sbjct: 398 --HEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPK 455

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRM 264
           VW S++G    + +V+ A    +R+
Sbjct: 456 VWGSLLGSCRIHGNVELAERASRRL 480


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/579 (39%), Positives = 356/579 (61%), Gaps = 11/579 (1%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           TY  LI CC  R ++ +   VH H+L  G + + FL   L+ M+     ++ A+ +FD+ 
Sbjct: 79  TYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT 138

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC-------DSL 188
            +R +  W  +  A   A   ++ L L   M R GV  + FTY+ VL+AC       D L
Sbjct: 139 RKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHL 198

Query: 189 IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
              +++H  + + G+ S V++ + L+D+YA+ G +  A  VFN MP R++V W+++I  +
Sbjct: 199 TKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACY 258

Query: 249 AQNSDVDEALNLYKRM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL 306
           A+N    EAL  ++ M  +    + +  T+ SVL+AC  LA LE G  +H ++L+   D 
Sbjct: 259 AKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDS 318

Query: 307 ILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           IL   +AL+ MY +CG L+    VF RM  +DV+SW+++IS    +GY ++A+++FE M 
Sbjct: 319 ILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEML 378

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
            +   P  +T V VL ACSH G VE+G   F+SM + +GI P  EHY+CM+DLLGRA +L
Sbjct: 379 ANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRL 438

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484
            EA K++ +M  EP    W +LLG+C++H N +LA  A++++  L+P++ G Y+LL++IY
Sbjct: 439 DEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIY 498

Query: 485 ANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLI 544
           A +Q WDEV  V+K +  RG+ K PG  W+EV +++++F   D  +P +++I+  L  L 
Sbjct: 499 AEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLA 558

Query: 545 QKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICG 604
           + +   GY P T  VL +LE E+KE  +  HSEKLA+ FGL++ ++G+ IRI KNLR+C 
Sbjct: 559 EDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCE 618

Query: 605 DCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           DCH F K  +K   + I++RD  R+H F++G CSCGDYW
Sbjct: 619 DCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 127/236 (53%), Gaps = 9/236 (3%)

Query: 69  GVRADSVTYAELIKCCLARHA----VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           GV +D  TY  ++K C+A       + + K +H H+   G+    +++  L++M+ +F  
Sbjct: 173 GVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGC 232

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE--GVRPNMFTYSAVL 182
           ++ A  +F+ MP RNVVSW+ MI+ Y       +AL     M+ E     PN  T  +VL
Sbjct: 233 VDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVL 292

Query: 183 RACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
           +AC SL  L Q   +H  I++ G +S + V SAL+ +Y + G+L   + VF+ M  RD+V
Sbjct: 293 QACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVV 352

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
            WNS+I  +  +    +A+ +++ M   G +    T  SVL AC+   L+E G ++
Sbjct: 353 SWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRL 408



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 21/205 (10%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           +SVT   +++ C +  A+E+ +L+H ++L  G +    +++ L+ M+ +   L+  Q +F
Sbjct: 284 NSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVF 343

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192
           D+M +R+VVSW ++IS+Y       KA+++   ML  G  P   T+ +VL AC       
Sbjct: 344 DRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACS------ 397

Query: 193 QLHCGIIKVG---FES---------DVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLV 239
             H G+++ G   FES          V   + ++D+  +   L  A  +  +M T     
Sbjct: 398 --HEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPK 455

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRM 264
           VW S++G    + +V+ A    +R+
Sbjct: 456 VWGSLLGSCRIHGNVELAERASRRL 480


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/553 (40%), Positives = 349/553 (63%), Gaps = 6/553 (1%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H H+L  G +    + + L+N++ K  L   +  +FD+ P+++  +W+++ISA+   + 
Sbjct: 47  LHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEA 106

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSA 212
              AL+    ML +GVRP+   Y +  +AC  L    + + +HC  +K G+  DVFV S+
Sbjct: 107 PLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSS 166

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           L+D+YAK GE+ +A  +F+EMP R++V W+ +I G+AQ  D  EAL L+K+        +
Sbjct: 167 LVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVN 226

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
             T +SV+R C+    LELG  +H   LK  +D    + +AL+ +Y KCG +E A  VF 
Sbjct: 227 DFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFD 286

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            +  +++  W++M+   AQ+ ++Q    LFE M    +KPN+I+ + VL+ACSHAG VE 
Sbjct: 287 EIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEK 346

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G  +F  M+  YGI+P  EHY+ ++DLLGRAGKLQEAV +I +MP  P    W ALL  C
Sbjct: 347 GREYFSLMRD-YGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGC 405

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
           ++H++T++A   A +IL +D    G ++LLSN YA + +++E A +RK +R RG+ KE G
Sbjct: 406 RIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETG 465

Query: 511 CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKED 570
            SW+E   ++H F   D SH +  +I + L+ L +++   GY  DT++VL+ ++GE+K +
Sbjct: 466 LSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEEKNE 525

Query: 571 SIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYH 630
           +I+YHSE+LAI FGL++   G+ IR+ KNLR+CGDCH   K  +K   + +++RD  R+H
Sbjct: 526 TIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFH 585

Query: 631 HFQDGNCSCGDYW 643
            F+DG CSCGDYW
Sbjct: 586 RFEDGKCSCGDYW 598



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/295 (32%), Positives = 155/295 (52%), Gaps = 6/295 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M   GVR D   Y    K C      +  K VH   +  G+  + F+ + L++
Sbjct: 110 ALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVD 169

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   + +A+ LFD+MPERNVVSW+ MI  Y       +AL L    L E V  N FT
Sbjct: 170 MYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFT 229

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +S+V+R C S   L   + +H   +K+ F+S  FV SALI +Y+K G +  A  VF+E+P
Sbjct: 230 FSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIP 289

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
           TR+L +WNS++   AQ++       L++ M   G   +  +  SVL AC+   L+E G +
Sbjct: 290 TRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGRE 349

Query: 295 VHVHVLKYDHDLILNN--ALLDMYCKCGSLEDAMSVFSRMIQKDVIS-WSTMISG 346
               +  Y  +    +  +L+D+  + G L++A+SV  +M  +   S W  +++G
Sbjct: 350 YFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTG 404



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 155/321 (48%), Gaps = 9/321 (2%)

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           QLH  I+K G ++   V   LI++Y+K      +  VF+E P +    W+S+I  FAQN 
Sbjct: 46  QLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNE 105

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNN 310
               AL  ++RM   G   D     S  +AC  L   ++G  VH   +K  Y  D+ + +
Sbjct: 106 APLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGS 165

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           +L+DMY KCG + DA  +F  M +++V+SWS MI G AQ     EAL LF+   +  +  
Sbjct: 166 SLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDV 225

Query: 371 NYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           N  T   V+  CS + F+E G   H   +K  +  D      S +I L  + G ++ A +
Sbjct: 226 NDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSF--DSSSFVGSALISLYSKCGVIEGAYQ 283

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489
           +  E+P     + W ++L AC  H +T       +++ N+  + P     LS +YA S  
Sbjct: 284 VFDEIPTRNLGL-WNSMLIACAQHAHTQRVFGLFEEMGNVGMK-PNFISFLSVLYACSHA 341

Query: 490 W--DEVAEVRKTMRARGITKE 508
              ++  E    MR  GI  E
Sbjct: 342 GLVEKGREYFSLMRDYGIEPE 362



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 6/187 (3%)

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNALLDMYCKCGS 321
           + +  F  +   + ++L + T    L  G Q+H H+LK+    I  +++ L+++Y K   
Sbjct: 16  LNQNSFEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQL 75

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
              ++ VF    +K   +WS++IS  AQN     AL+ F  M    ++P+         A
Sbjct: 76  PLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKA 135

Query: 382 CSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
           C      + G + H  ++K  Y  D      S ++D+  + G++ +A  L  EMP E + 
Sbjct: 136 CGFLRRSDVGKSVHCLAVKTGYYCDVFVG--SSLVDMYAKCGEIGDARHLFDEMP-ERNV 192

Query: 441 VTWRALL 447
           V+W  ++
Sbjct: 193 VSWSGMI 199


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/564 (41%), Positives = 354/564 (62%), Gaps = 14/564 (2%)

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAY 150
           + +H  V+  G++    + N +L  + +   L EA+ +F +M E   R+ VSW  MI A 
Sbjct: 159 RQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVAC 218

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA---CDSLIILRQLHCGIIKVGFESDV 207
              +   +A+EL   M+R G++ +MFT ++VL A      L+   Q H  +IK GF  + 
Sbjct: 219 GQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNS 278

Query: 208 FVRSALIDIYAKL-GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE-ALNLYKRMK 265
            V S LID+Y+K  G +     VF E+   DLV+WN++I GF+Q  D+ E  +  ++ M+
Sbjct: 279 HVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQ 338

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD---HDLILNNALLDMYCKCGSL 322
             GF  D  +   V  AC+ L+   +G QVH   +K D   + + +NNAL+ MY KCG++
Sbjct: 339 HNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNV 398

Query: 323 EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
            DA  VF  M + +++S ++MI+G AQ+G   E+L+LFE M    I PN IT + VL AC
Sbjct: 399 HDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSAC 458

Query: 383 SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
            H G VE+G  +F  MK+ + I+P  EHYSCMIDLLGRAGKL+EA ++I  MP+ P ++ 
Sbjct: 459 VHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIE 518

Query: 443 WRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502
           W  LLGAC+ H N +LA+ AA + L L+P +   Y++LSN+YA++ +W+E A V++ MR 
Sbjct: 519 WATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRE 578

Query: 503 RGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVL-- 560
           RG+ K+PGCSWIE++K++H F   D+SHP I +I+ ++  +++K+   GY PD  + L  
Sbjct: 579 RGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVK 638

Query: 561 -QDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQ 619
            +++E ++KE  + YHSEKLA+ FGL+S  +   I + KNLRICGDCH   KL + +  +
Sbjct: 639 DEEVEPDEKERRLLYHSEKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITGR 698

Query: 620 TIVIRDPIRYHHFQDGNCSCGDYW 643
            I +RD  R+H F++G+CSCGDYW
Sbjct: 699 EITVRDTHRFHCFKEGHCSCGDYW 722



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 159/288 (55%), Gaps = 12/288 (4%)

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL--I 164
           P  F  N L+N + K SL+  A+ +FD++P+ ++VS+ T+I+AY D      AL L   +
Sbjct: 73  PNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEV 132

Query: 165 FMLREGVRPNMFTYSAVLRAC-DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
             LR G+  + FT S V+ AC D + ++RQLHC ++  G++    V +A++  Y++ G L
Sbjct: 133 RELRFGL--DGFTLSGVIIACGDDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFL 190

Query: 224 RNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
             A  VF EM     RD V WN++I    Q+ +  EA+ L++ M R G   D  T+ SVL
Sbjct: 191 NEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVL 250

Query: 281 RACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKC-GSLEDAMSVFSRMIQKDV 337
            A T +  L  G Q H  ++K  +  +  + + L+D+Y KC G + +   VF  +   D+
Sbjct: 251 TAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDL 310

Query: 338 ISWSTMISGLAQ-NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           + W+TMISG +Q    S++ +  F  M+ +   P+  + V V  ACS+
Sbjct: 311 VLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSN 358



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 118/252 (46%), Gaps = 14/252 (5%)

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           +VF  + LI+ YAK   +  A  VF+E+P  D+V +N++I  +A   +   AL L+  ++
Sbjct: 74  NVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVR 133

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDA 325
              F  D  TL+ V+ AC     L       V V  YD    +NNA+L  Y + G L +A
Sbjct: 134 ELRFGLDGFTLSGVIIACGDDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEA 193

Query: 326 MSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL--F 380
             VF  M +   +D +SW+ MI    Q+    EA++LF  M    +K +  T+  VL  F
Sbjct: 194 RRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAF 253

Query: 381 ACSHAGFVED--GWNHFKSMKKFYGIDPGREHYSCMIDLLGR-AGKLQEAVKLIHEMPYE 437
            C     V+D  G   F  M    G        S +IDL  + AG + E  K+  E+   
Sbjct: 254 TC-----VKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIA-A 307

Query: 438 PDAVTWRALLGA 449
           PD V W  ++  
Sbjct: 308 PDLVLWNTMISG 319


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/586 (39%), Positives = 347/586 (59%), Gaps = 7/586 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  G R D VT+  ++  C+    ++  K V   +    FE + F+   L+ M+ +   
Sbjct: 102 MQHEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRS 161

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            E A  +F +M ++N+++W+ +I+A+ D     +AL     M +EG+ PN  T+ ++L  
Sbjct: 162 PENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNG 221

Query: 185 CDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAK--LGELRNAECVFNEMPTRDLV 239
             +   L  L ++H  I + G +    + +AL+++Y +   GEL  AE +  EM  + + 
Sbjct: 222 FTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQIT 281

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
            WN +I G+  +    EAL  Y+R++      D+ T  SVL ACT    L  G  +H + 
Sbjct: 282 AWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNA 341

Query: 300 LK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           ++   D D+I+ NAL +MY KCGS+E+A  +F  M  +  +SW+ M+   AQ+G S+E L
Sbjct: 342 VECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVL 401

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
           KL   M+   +K N IT V VL +CSHAG + +G  +F S+    GI+   EHY C++DL
Sbjct: 402 KLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDL 461

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           LGRAGKLQEA K I +MP EP+ VTW +LLGAC+VH++ D    AA+K+L LDP +    
Sbjct: 462 LGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSAS 521

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           ++LSNIY+    W   A++R+ M +R + K PG S I+V  ++H F V D+SHP+  +I 
Sbjct: 522 VVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIY 581

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
             ++ L   +   GY PDT  VL D++ EQKE  + YHSEKLAI FGL+S  +  ++ I 
Sbjct: 582 DKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPEKSSLHIF 641

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLR+C DCHT  K  +K+  + IV+RD  R+HHF+DG+CSC DYW
Sbjct: 642 KNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 217/409 (53%), Gaps = 9/409 (2%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   GV+A+ +T+  ++   +   A+ + K +H+ V       + F+   L+N + K   
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L +A+ +FD MP R+V +W +MISAY  ++ + +A  +   M  EG R +  T+ ++L A
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 185 C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C   ++L   + +   I +  FE D+FV +ALI +YA+     NA  VF  M  ++L+ W
Sbjct: 121 CVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITW 180

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           ++II  FA +    EAL  ++ M++ G   ++ T  S+L   T  + LE  +++H+ + +
Sbjct: 181 SAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITE 240

Query: 302 Y--DHDLILNNALLDMYCKC--GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           +  D    ++NAL+++Y +C  G L+ A  +   M ++ + +W+ +I+G   +G S+EAL
Sbjct: 241 HGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREAL 300

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
           + ++ +++  I  + +T + VL AC+ +  + +G     S     G+D      + + ++
Sbjct: 301 ETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEG-KMIHSNAVECGLDSDVIVKNALTNM 359

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
             + G ++ A ++   MP    AV+W  +L A   H  ++  +   +K+
Sbjct: 360 YSKCGSMENARRIFDSMPIR-SAVSWNGMLQAYAQHGESEEVLKLIRKM 407



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 171/335 (51%), Gaps = 10/335 (2%)

Query: 166 MLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           ML EGV+ N+ T+  VL +    D+L   + +H  + +     DVFV +AL++ Y K G 
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           L +A  VF+ MP R +  WNS+I  ++ +    EA  +++RM+  G   D+ T  S+L A
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 283 CTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           C     L+ G  V   +    ++ DL +  AL+ MY +C S E+A  VF RM QK++I+W
Sbjct: 121 CVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITW 180

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           S +I+  A +G+  EAL+ F  M+   I PN +T + +L   +    +E+  +    +  
Sbjct: 181 SAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEE-LSRIHLLIT 239

Query: 401 FYGIDPGREHYSCMIDLLGR--AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
            +G+D      + ++++ GR   G+L  A  ++ EM  E     W  L+    +H  +  
Sbjct: 240 EHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMD-EQQITAWNVLINGYTLHGRSRE 298

Query: 459 AICAAKKI-LNLDPQDPGTYILLSNIYANSQKWDE 492
           A+   +++ L   P D  T+I + N   +S    E
Sbjct: 299 ALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAE 333



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 159/311 (51%), Gaps = 11/311 (3%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105
            T F        A++    MQ  G+  + VT+  L+        +EE   +H  +   G 
Sbjct: 184 ITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGL 243

Query: 106 EPETFLVNILLNMHVKFSL--LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL 163
           +  T + N L+N++ +     L+ A+V+  +M E+ + +W  +I+ Y     + +ALE  
Sbjct: 244 DDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETY 303

Query: 164 IFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKL 220
             +  E +  +  T+ +VL AC S   L   + +H   ++ G +SDV V++AL ++Y+K 
Sbjct: 304 QRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKC 363

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           G + NA  +F+ MP R  V WN ++  +AQ+ + +E L L ++M++ G   +  T  SVL
Sbjct: 364 GSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVL 423

Query: 281 RACTGLALLELGTQVHVHVLKYDHDLILNN----ALLDMYCKCGSLEDAMSVFSRM-IQK 335
            +C+   L+  G Q + H L +D  + +       L+D+  + G L++A    S+M  + 
Sbjct: 424 SSCSHAGLIAEGCQ-YFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEP 482

Query: 336 DVISWSTMISG 346
           ++++W++++  
Sbjct: 483 EIVTWASLLGA 493



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 119/229 (51%), Gaps = 24/229 (10%)

Query: 42  LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL 101
           L++ +T     R+   A++    +Q   +  D VT+  ++  C +  ++ E K++H++ +
Sbjct: 286 LINGYTLHGRSRE---ALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAV 342

Query: 102 SGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALE 161
             G + +  + N L NM+ K   +E A+ +FD MP R+ VSW  M+ AY     +++ L+
Sbjct: 343 ECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLK 402

Query: 162 LLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGII--------KVGFESDVFVRS-- 211
           L+  M +EGV+ N  T+ +VL +C         H G+I         +G +  + V++  
Sbjct: 403 LIRKMEQEGVKLNGITFVSVLSSCS--------HAGLIAEGCQYFHSLGHDRGIEVKTEH 454

Query: 212 --ALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
              L+D+  + G+L+ AE   ++MP+  ++V W S++G    + D+D  
Sbjct: 455 YGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRG 503


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/618 (37%), Positives = 369/618 (59%), Gaps = 24/618 (3%)

Query: 50  CYQRD--LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY     L  +  + ++M+   V  +   +  L+K        + A  +H   +  G + 
Sbjct: 84  CYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTVRLGLDS 143

Query: 108 ETFLVNILLNMHVKF---------------SLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
           + ++ N L+N + KF               S ++  + +FD MP R+VVSW T+I+ +  
Sbjct: 144 DLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQ 203

Query: 153 AKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVF 208
             M  +AL+++  M + G ++P+ FT S++L      + +   +++H   ++ GF+ DVF
Sbjct: 204 NGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVF 263

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           + S+LID+YAK   L  +   F  +P +D + WNSII G  QN + D  L  ++RM +  
Sbjct: 264 IGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKEN 323

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAM 326
                 + +SV+ AC  L  L LG Q+H  +  L +D +  + ++L+DMY KCG+++ A 
Sbjct: 324 VKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMAR 383

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            VF R+ ++D+++W+ +I G A +G++ +A+ LFE+M    ++P Y+  + VL ACSHAG
Sbjct: 384 YVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAG 443

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRA 445
            V++GW +F SM++ +GI PG EHY+ + DLLGRAG+L+EA   I  M   +P    W  
Sbjct: 444 LVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSI 503

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LL AC+ H++ +LA     K+L++D ++ G Y+L+SNIY+ +Q+W + A +R  MR +G+
Sbjct: 504 LLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGL 563

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            K P CSWIEV  Q+H F   D SHP  DKINK L  L++++   GY  DTN VL D++ 
Sbjct: 564 KKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQVLHDVDE 623

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           E K + +  HSE+LAI +G++S T G TIR+ KN+R+C DCHT  K   K+  + I +RD
Sbjct: 624 ELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVCADCHTAIKFITKIVGREITVRD 683

Query: 626 PIRYHHFQDGNCSCGDYW 643
             R+HHF++G+CSCGDYW
Sbjct: 684 NSRFHHFKNGSCSCGDYW 701



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 121/253 (47%), Gaps = 26/253 (10%)

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           W+SII  +  +S +  + + +  M+      ++    S+L+A T L   +L   +H   +
Sbjct: 78  WSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTV 137

Query: 301 K--YDHDLILNNALLDMYCK---CGSLEDAM------------SVFSRMIQKDVISWSTM 343
           +   D DL + NAL++ Y K    G + D               VF  M  +DV+SW+T+
Sbjct: 138 RLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTV 197

Query: 344 ISGLAQNGYSQEALKLFESM-KVSRIKPNYITIVGVL--FACSHAGFVEDGWNHFKSMKK 400
           I+G AQNG   EAL +   M K  ++KP+  T+  +L  FA  H    +    H  +++ 
Sbjct: 198 IAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFA-EHVDVNKGKEIHGYAVRN 256

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
             G D      S +ID+  +  +L+ +++  + +P   DA++W +++  C  +   D  +
Sbjct: 257 --GFDGDVFIGSSLIDMYAKCNRLECSLRAFYILP-RKDAISWNSIIAGCVQNGEFDRGL 313

Query: 461 CAAKKIL--NLDP 471
              +++L  N+ P
Sbjct: 314 GFFRRMLKENVKP 326


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/643 (36%), Positives = 379/643 (58%), Gaps = 36/643 (5%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN+ S +     +        A++    +   G   +   +  ++K  ++    E    +
Sbjct: 102 RNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWGI 161

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H  +   G E   F+   L++ +     ++ A+ +FD +  +++VSWT M++ + +    
Sbjct: 162 HACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCF 221

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSAL 213
            +AL+L   M   G +PN FT+++V +AC   ++  + + +H   +K  +E D++V  AL
Sbjct: 222 KEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVAL 281

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           +D+Y K G++ +A   F E+P +D++ W+ +I  +AQ+    EA+ ++ +M++A    +Q
Sbjct: 282 LDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQ 341

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSR 331
            T  SVL+AC  +  L LG Q+H HV+K     D+ ++NAL+D+Y KCG +E++M +F+ 
Sbjct: 342 FTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAE 401

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR------------------------ 367
              ++ ++W+T+I G  Q G  ++AL+LF +M   R                        
Sbjct: 402 SPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPG 461

Query: 368 -------IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420
                  +KP+ +T VGVL AC++AG ++ G  +F SM + +GI+P  EHY+CM+ LLGR
Sbjct: 462 LQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGR 521

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480
            G L +AVKLI E+P++P  + WRALLGAC +H + +L   +A+++L ++PQD  T++LL
Sbjct: 522 GGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLL 581

Query: 481 SNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHL 540
           SN+YA +++WD VA VRK M+ +G+ KEPG SWIE    +H+F V D+SHP++  IN  L
Sbjct: 582 SNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGML 641

Query: 541 KHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNL 600
           + L  K    GY P+ N VL D+E E+KE  +  HSE+LA+ FG++    G  IRI KNL
Sbjct: 642 EWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNL 701

Query: 601 RICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           RIC DCH   K  +K+  + IV+RD  R+HHFQ+G CSCGDYW
Sbjct: 702 RICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 744



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 209/380 (55%), Gaps = 7/380 (1%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           +S  YA  ++ C+ +      K +H  +L  G   + F  NILLNM+VK   L +A  LF
Sbjct: 37  NSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLF 96

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR---ACDSLI 189
           D+MPERN +S+ T+I  Y ++    +A+EL + + REG   N F ++ +L+   + D   
Sbjct: 97  DEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGE 156

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           +   +H  I K+G ES+ FV +ALID Y+  G +  A  VF+ +  +D+V W  ++  FA
Sbjct: 157 LGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFA 216

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           +N    EAL L+ +M+  GF  +  T  SV +AC GL   ++G  VH   LK  Y+ DL 
Sbjct: 217 ENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLY 276

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           +  ALLD+Y K G ++DA   F  + +KDVI WS MI+  AQ+  S+EA+++F  M+ + 
Sbjct: 277 VGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQAL 336

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           + PN  T   VL AC+    +  G N         G+       + ++D+  + G+++ +
Sbjct: 337 VLPNQFTFASVLQACATMEGLNLG-NQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENS 395

Query: 428 VKLIHEMPYEPDAVTWRALL 447
           ++L  E P+  D VTW  ++
Sbjct: 396 MELFAESPHRND-VTWNTVI 414


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/657 (38%), Positives = 372/657 (56%), Gaps = 51/657 (7%)

Query: 27  PPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLA 86
           P + + NT+ R  +S  D F  F    DL          +C  +  +  T+  +IK    
Sbjct: 88  PNLYTWNTLIRAYASSSDPFQSFVIFLDLLD--------KCEDL-PNKFTFPFVIKAASE 138

Query: 87  RHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTM 146
             A      VH   +   F  + +++N L+  +     L  A+ LF  +  ++VVSW +M
Sbjct: 139 LKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSM 198

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR-------------- 192
           ISA+      + ALEL + M RE V PN  T   VL AC   + L               
Sbjct: 199 ISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGI 258

Query: 193 -------------QLHCGIIKVG-------FESDVFVRSALIDIYAKLGELRNAECVFNE 232
                           CG +           E DVF  + ++D YAK+G+   A  VFN 
Sbjct: 259 KVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNA 318

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLRACTGLALLEL 291
           MP +++  WN +I  + QN    EAL ++  ++ +  A  D+ TL S L AC  L  ++L
Sbjct: 319 MPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDL 378

Query: 292 GTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
           G  +HV++ +    ++LN    ++L+DMY KCGSLE A+ VF  + ++DV  WS MI+GL
Sbjct: 379 GGWIHVYIKR--EGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGL 436

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
             +G  + A+ LF  M+ +++KPN +T   VL ACSHAG V++G   F  M+  YG+ P 
Sbjct: 437 GMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPE 496

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            +HY+CM+D+LGRAG L+EA++LI+EM   P A  W ALLGAC +H N +L   A+ ++L
Sbjct: 497 MKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLL 556

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
            L+P++ G  +LLSNIYA + +W++V+E+RK MR   + KEPGCS IE N  +H F V D
Sbjct: 557 KLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGD 616

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQ-KEDSIQYHSEKLAIVFGLM 586
           ++HP    I   L+ +  KL  VGY P+ +++LQ +E +  KE ++  HSEKLAI FGL+
Sbjct: 617 NTHPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLV 676

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +L   + IR+ KNLRICGDCH FAKL +++ ++ I++RD  R+HHF+DG+CSC DYW
Sbjct: 677 TLAPSQPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/413 (30%), Positives = 208/413 (50%), Gaps = 48/413 (11%)

Query: 91  EEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           ++ K VH  +L  G   + F  + L        FS L+ A+ LFDQ+P+ N+ +W T+I 
Sbjct: 39  KQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIR 98

Query: 149 AYCDAKMNDKALELLIFM-LREGVR--PNMFTYSAVLRACDSLIILR---QLHCGIIKVG 202
           AY  A  +D     +IF+ L +     PN FT+  V++A   L   R    +H   IK+ 
Sbjct: 99  AY--ASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLS 156

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
           F  D+++ ++L+  Y   G+L  AE +F  +  +D+V WNS+I  FAQ +  ++AL L+ 
Sbjct: 157 FGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFL 216

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCG 320
           +M+R     +  T+  VL AC     LE G  V  ++ +     DL L NA+LDMY KCG
Sbjct: 217 KMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCG 276

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLA-------------------------------Q 349
           S++DA  +F  M ++DV SW+ M+ G A                               Q
Sbjct: 277 SVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQ 336

Query: 350 NGYSQEALKLFESMKVSRI-KPNYITIVGVLFACSHAGFVE-DGWNHFKSMKKFYGIDPG 407
           NG  +EAL +F  +++S+I KP+ +T+V  L AC+  G ++  GW H    ++  GI   
Sbjct: 337 NGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKRE--GIVLN 394

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
               S ++D+  + G L++A+++ + +  E D   W A++    +H     AI
Sbjct: 395 CHLISSLVDMYAKCGSLEKALEVFYSVE-ERDVYVWSAMIAGLGMHGRGKAAI 446



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 179/380 (47%), Gaps = 18/380 (4%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRD 237
           + +  C S   L+++H  +++ G   D F  S L    A      L  A  +F+++P  +
Sbjct: 30  STIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPN 89

Query: 238 LVVWNSIIGGFAQNSDVDEALNLY-KRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           L  WN++I  +A +SD  ++  ++   + +     ++ T   V++A + L    +GT VH
Sbjct: 90  LYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVH 149

Query: 297 VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
              +K  +  DL + N+L+  Y  CG L  A  +F  +  KDV+SW++MIS  AQ    +
Sbjct: 150 GMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPE 209

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSC 413
           +AL+LF  M+   + PN +T+VGVL AC+    +E G W    S  +  GI       + 
Sbjct: 210 DALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRW--VCSYIERKGIKVDLTLCNA 267

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP-Q 472
           M+D+  + G + +A KL  EMP E D  +W  +L       + D    AA+ + N  P +
Sbjct: 268 MLDMYTKCGSVDDAQKLFDEMP-ERDVFSWTIMLDGYAKMGDYD----AARLVFNAMPVK 322

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG---CSWIEVNKQIHAFNVADSS 529
           +   + +L + Y  + K  E   +   ++   I K       S +    Q+ A ++    
Sbjct: 323 EIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWI 382

Query: 530 HPQIDKINKHLK-HLIQKLV 548
           H  I +    L  HLI  LV
Sbjct: 383 HVYIKREGIVLNCHLISSLV 402


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/577 (40%), Positives = 351/577 (60%), Gaps = 5/577 (0%)

Query: 72  ADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVL 131
           AD  T A  +K C    A++  + V  + +  G   + F+++ L++M+     +  A+++
Sbjct: 118 ADQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLV 177

Query: 132 FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL--- 188
           FD   E  VV W  +++AY       + +E+   ML  GV  +  T  +V+ AC  +   
Sbjct: 178 FDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDA 237

Query: 189 IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
            + + +   + + G   +  + +AL+D+YAK GE+  A  +F+ M +RD+V W+++I G+
Sbjct: 238 KLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGY 297

Query: 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL-- 306
            Q     EAL L+  M+ A    +  T+ SVL AC  L  LE G  VH +V +    L  
Sbjct: 298 TQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTT 357

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
           IL  AL+D Y KCG ++DA+  F  M  K+  +W+ +I G+A NG  +EAL+LF SM+ +
Sbjct: 358 ILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREA 417

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
            I+P  +T +GVL ACSH+  VE+G  HF SM + YGI P  EHY CM+DLLGRAG + E
Sbjct: 418 GIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDE 477

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           A + I  MP EP+AV WRALL +C VHRN  +   A K+I++L+P   G Y+LLSNIYA+
Sbjct: 478 AYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYAS 537

Query: 487 SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
           + +W + A VRK M+ RGI K PGCS IE++  +  F   DS HP++ +I + ++ +I +
Sbjct: 538 AGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGR 597

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           +   GY P+T  V  ++E  +KE S+ +HSEKLAI FGLM L  G TIR+ KNLR+C DC
Sbjct: 598 IKVAGYVPNTADVRLEVEEREKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCADC 657

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           H+  KL +K+ ++ IV+RD   +HHF+DG CSC DYW
Sbjct: 658 HSATKLISKVYDREIVVRDRNIFHHFKDGTCSCNDYW 694



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 143/309 (46%), Gaps = 12/309 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           GV  D VT   ++  C      +  K V  HV   G      LV  L++M+ K   + +A
Sbjct: 216 GVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKA 275

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + LFD M  R+VV+W+ MIS Y  A    +AL L   M    V PN  T  +VL AC  L
Sbjct: 276 RRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVL 335

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             L   + +H  + +        + +AL+D YAK G + +A   F  MP ++   W ++I
Sbjct: 336 GALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALI 395

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD 305
            G A N    EAL L+  M+ AG      T   VL AC+   L+E G + H   +  D+ 
Sbjct: 396 KGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRR-HFDSMARDYG 454

Query: 306 LILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQN---GYSQEAL 357
           +         ++D+  + G +++A      M I+ + + W  ++S  A +   G  +EAL
Sbjct: 455 IKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEAL 514

Query: 358 KLFESMKVS 366
           K   S+  S
Sbjct: 515 KQIISLNPS 523



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           S+++  +T+    R+   A+     MQ   V  + VT   ++  C    A+E  K VH++
Sbjct: 291 SAMISGYTQADQCRE---ALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSY 347

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           V        T L   L++ + K   +++A   F+ MP +N  +WT +I          +A
Sbjct: 348 VRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREA 407

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIIL----RQLHCGIIKVGFESDVFVRSALID 215
           LEL   M   G+ P   T+  VL AC    ++    R         G +  V     ++D
Sbjct: 408 LELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVD 467

Query: 216 IYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDV---DEALN 259
           +  + G +  A      MP   + V+W +++   A + +V   +EAL 
Sbjct: 468 LLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALK 515


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/610 (37%), Positives = 365/610 (59%), Gaps = 36/610 (5%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL---- 125
           + A+   ++ L++ C+   +V   K +H+ + + G   + F+ N LLN++ KF  L    
Sbjct: 65  IWAEPRLFSNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAV 124

Query: 126 ---------------------------EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
                                      E A+ LFD+MP+RNV +W  M++     +MN++
Sbjct: 125 ALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEE 184

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALID 215
           AL L   M      P+ ++  +VLR C    +L+  +Q+H  ++K GFE ++ V  +L  
Sbjct: 185 ALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAH 244

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           +Y K G + + E V N MP   LV WN+++ G AQ    +  L+ Y  MK AGF  D+ T
Sbjct: 245 MYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKIT 304

Query: 276 LTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
             SV+ +C+ LA+L  G Q+H   +K     ++ + ++L+ MY +CG L+D++  F    
Sbjct: 305 FVSVISSCSELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECK 364

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393
           ++DV+ WS+MI+    +G  +EA+KLF  M+   +  N IT + +L+ACSH G  + G  
Sbjct: 365 ERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLG 424

Query: 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            F  M K YG+    +HY+C++DLLGR+G L+EA  +I  MP + DA+ W+ LL ACK+H
Sbjct: 425 LFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIH 484

Query: 454 RNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSW 513
           +N ++A   A ++L +DPQD  +Y+LL+NIY+++ +W  V+EVR+ M+ + + KEPG SW
Sbjct: 485 KNAEIARRVADEVLRIDPQDSASYVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISW 544

Query: 514 IEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQ 573
           +EV  Q+H F++ D  HP+  +IN++L+ L  ++   GY PDT+ VL D++ E+KE  ++
Sbjct: 545 VEVKNQVHQFHMGDECHPKHVEINQYLEELTSEIKRQGYVPDTSSVLHDMDNEEKEQILR 604

Query: 574 YHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQ 633
           +HSEKLAI F LM+  +G  IR+ KNLR+C DCH   K  ++++   I++RD  R+HHF+
Sbjct: 605 HHSEKLAIAFALMNTPEGVPIRVMKNLRVCSDCHVAIKYISEIKKLEIIVRDSSRFHHFK 664

Query: 634 DGNCSCGDYW 643
           +G CSCGDYW
Sbjct: 665 NGTCSCGDYW 674



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 95/194 (48%), Gaps = 21/194 (10%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  G R D +T+  +I  C     + + K +H   +  G   E  +V+ L++M+ +   
Sbjct: 293 MKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGC 352

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L+++   F +  ER+VV W++MI+AY      ++A++L   M +E +  N  T+ ++L A
Sbjct: 353 LQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYA 412

Query: 185 CDSLIILRQLHCG------------IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           C         HCG            + K G ++ +   + L+D+  + G L  AE +   
Sbjct: 413 CS--------HCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRS 464

Query: 233 MPTR-DLVVWNSII 245
           MP + D ++W +++
Sbjct: 465 MPVKADAIIWKTLL 478


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/555 (40%), Positives = 345/555 (62%), Gaps = 5/555 (0%)

Query: 94   KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
            K  H  + + G + ++ ++     M+V F+ ++ A ++F+ +P      W  MI  +   
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 154  KMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVR 210
                 +LEL   M+ +G++P+ F +   L++C  L  L++   +H  ++  G  +D+FV 
Sbjct: 797  GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVD 856

Query: 211  SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
            +AL+D+YAK G++  A  VF++M  RDLV W S+I G+A N    E L  +  M+ +G  
Sbjct: 857  AALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI 916

Query: 271  ADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSV 328
             ++ ++ SVL AC  L  L  G   H +V++  ++ D+++  A++DMY KCGSL+ A  +
Sbjct: 917  PNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCL 976

Query: 329  FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
            F     KD++ WS MI+    +G+ ++A+ LF+ M  + ++P+++T   VL ACSH+G +
Sbjct: 977  FDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLL 1036

Query: 389  EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
            E+G  +F+ M + + I     +Y+CM+DLLGRAG+L EAV LI  MP EPDA  W +LLG
Sbjct: 1037 EEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLG 1096

Query: 449  ACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
            AC++H N DLA   A  + +LDP   G ++LLSNIYA   +W+EV +VRK M  RG  K 
Sbjct: 1097 ACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKI 1156

Query: 509  PGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQK 568
             G S +E + Q+H F V D SHPQ +K+   L+ L   +  +GY P T++VL D+E E K
Sbjct: 1157 QGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAK 1216

Query: 569  EDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIR 628
            E ++ YHSE+LAI FGL++ + G T+RI KNLRICGDCH   KL +K+ N+ I++RD  R
Sbjct: 1217 EAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHR 1276

Query: 629  YHHFQDGNCSCGDYW 643
            +H F+DG CSCGDYW
Sbjct: 1277 FHRFEDGVCSCGDYW 1291



 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 184/507 (36%), Positives = 290/507 (57%), Gaps = 8/507 (1%)

Query: 62  MHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK 121
           M  M C  V  D VT   ++  C     V+    VH  V+   F+ +  LVN LLN++ K
Sbjct: 196 MVMMDC--VVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAK 253

Query: 122 FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
               + A  LF +MPE++V+SW+TMI+ Y + +  ++AL L   M+ +   PN  T  + 
Sbjct: 254 TGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSA 313

Query: 182 LRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
           L+AC    +L   +++H   +  GFE D  V +ALID+Y K      A  +F  +P +D+
Sbjct: 314 LQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDV 373

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           V W +++ G+AQN    +++ +++ M   G   D   +  +L A + L + +    +H +
Sbjct: 374 VSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGY 433

Query: 299 VLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           V++  ++ ++ +  +L+++Y KCGSL DA+ +F  MI +DV+ WS+MI+    +G   EA
Sbjct: 434 VVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEA 493

Query: 357 LKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           L++F+ M K S ++PN +T + +L ACSHAG VE+G   F  M   Y + P  EH+  M+
Sbjct: 494 LEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMV 553

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           DLLGR G+L +A+ +I+ MP       W ALLGAC++H N ++   AAK +  LDP   G
Sbjct: 554 DLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAG 613

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
            YILLSNIYA   KWD VAE+R  ++ RG+ K  G S +EV   +H+F  +D  HP   K
Sbjct: 614 YYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQK 673

Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQD 562
           I + L+ L  ++    Y PD +++L D
Sbjct: 674 IYELLRKLEAQMGKEVYIPDLDFLLHD 700



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 132/382 (34%), Positives = 205/382 (53%), Gaps = 19/382 (4%)

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
           +L + C    +V +   +H+ V   G   +TF    L +++ K + L+ A+ +FD+ P  
Sbjct: 9   DLFQACNNGRSVSQ---LHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHP 65

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFML-REGVRPNMFTYSAVLRACDSLIILRQLHCG 197
           NV  W + + +YC  K  ++ L L   M+   G  P+ FT    L+AC  L   R L  G
Sbjct: 66  NVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGL---RMLELG 122

Query: 198 IIKVGFE-------SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
            +  GF        SD+FV SAL+++Y+K G++  A  VF E    D V+W S++ G+ Q
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 251 NSDVDEALNLYKRMKRAG-FAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           N+D +EAL L+ +M        D  TL SV+ AC  L  ++ G+ VH  V++  +D DL 
Sbjct: 183 NNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLP 242

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           L N+LL++Y K G  + A ++FS+M +KDVISWSTMI+  A N  + EAL LF  M   R
Sbjct: 243 LVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKR 302

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
            +PN +T+V  L AC+ +  +E+G      +  + G +      + +ID+  +     EA
Sbjct: 303 FEPNSVTVVSALQACAVSRNLEEG-KKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEA 361

Query: 428 VKLIHEMPYEPDAVTWRALLGA 449
           V L   +P + D V+W ALL  
Sbjct: 362 VDLFQRLP-KKDVVSWVALLSG 382



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 151/289 (52%), Gaps = 7/289 (2%)

Query: 65   MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
            M   G++ D   +   +K C     ++  K++H H++  G   + F+   L++M+ K   
Sbjct: 809  MMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGD 868

Query: 125  LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            +E A+++FD+M  R++VSWT+MIS Y     N + L     M   GV PN  +  +VL A
Sbjct: 869  IEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLA 928

Query: 185  CDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
            C +L  LR+    H  +I+ GFE D+ V +A++D+Y+K G L  A C+F+E   +DLV W
Sbjct: 929  CGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCW 988

Query: 242  NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT---QVHVH 298
            +++I  +  +    +A++L+ +M +AG      T T VL AC+   LLE G    Q+   
Sbjct: 989  SAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTE 1048

Query: 299  VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
                   L     ++D+  + G L +A+ +   M ++ D   W +++  
Sbjct: 1049 EFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGA 1097



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/277 (32%), Positives = 142/277 (51%), Gaps = 14/277 (5%)

Query: 191  LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
            L++ H  I   G + D  + +    +Y     +  A  VF ++P     +WN +I GFA 
Sbjct: 736  LKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFAT 795

Query: 251  NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLIL 308
            +     +L LY +M   G   D+      L++C GL+ L+ G  +H H++     +DL +
Sbjct: 796  DGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFV 855

Query: 309  NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            + AL+DMY KCG +E A  VF +M  +D++SW++MISG A NGY+ E L  F+ M+ S +
Sbjct: 856  DAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGV 915

Query: 369  KPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREH----YSCMIDLLGRAGK 423
             PN ++I+ VL AC + G +  G W H       Y I  G E      + ++D+  + G 
Sbjct: 916  IPNRVSILSVLLACGNLGALRKGEWFH------SYVIQTGFEFDILVATAIMDMYSKCGS 969

Query: 424  LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            L  A  L  E   + D V W A++ +  +H +   AI
Sbjct: 970  LDLARCLFDETAGK-DLVCWSAMIASYGIHGHGRKAI 1005



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 152/285 (53%), Gaps = 11/285 (3%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A+   H M       +SVT    ++ C     +EE K +H   +  GFE +  +   L+
Sbjct: 290 EALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALI 349

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M++K S  +EA  LF ++P+++VVSW  ++S Y    M  K++ +   ML +G++P+  
Sbjct: 350 DMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAV 409

Query: 177 TYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
               +L A   L I +Q   LH  +++ GF S+VFV ++LI++Y+K G L +A  +F  M
Sbjct: 410 AVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGM 469

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELG 292
             RD+V+W+S+I  +  +    EAL ++ +M K +    +  T  S+L AC+   L+E G
Sbjct: 470 IVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEG 529

Query: 293 TQ-----VHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
            +     VH + L+ D +      ++D+  + G L  AM + +RM
Sbjct: 530 LKIFDRMVHDYQLRPDSEHF--GIMVDLLGRIGQLGKAMDIINRM 572



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 104/206 (50%), Gaps = 21/206 (10%)

Query: 65   MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
            M+  GV  + V+   ++  C    A+ + +  H++V+  GFE +  +   +++M+ K   
Sbjct: 910  MRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGS 969

Query: 125  LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            L+ A+ LFD+   +++V W+ MI++Y       KA++L   M++ GVRP+  T++ VL A
Sbjct: 970  LDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSA 1029

Query: 185  CDSLIILRQLHCGIIKVG-------FESDVFVR-----SALIDIYAKLGELRNAECVFNE 232
            C         H G+++ G        E  V  R     + ++D+  + G+L  A  +   
Sbjct: 1030 CS--------HSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIEN 1081

Query: 233  MPTR-DLVVWNSIIGGFAQNSDVDEA 257
            MP   D  +W S++G    ++++D A
Sbjct: 1082 MPVEPDASIWGSLLGACRIHNNLDLA 1107



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 97/207 (46%), Gaps = 26/207 (12%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           ++M     M   G++ D+V   +++         ++A  +H +V+  GF    F+   L+
Sbjct: 391 KSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLI 450

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNM 175
            ++ K   L +A  LF  M  R+VV W++MI+AY       +ALE+   M++   VRPN 
Sbjct: 451 ELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNN 510

Query: 176 FTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVR--------------SALIDIYAKLG 221
            T+ ++L AC         H G+++ G +  +F R                ++D+  ++G
Sbjct: 511 VTFLSILSACS--------HAGLVEEGLK--IFDRMVHDYQLRPDSEHFGIMVDLLGRIG 560

Query: 222 ELRNAECVFNEMPT-RDLVVWNSIIGG 247
           +L  A  + N MP      VW +++G 
Sbjct: 561 QLGKAMDIINRMPIPAGPHVWGALLGA 587


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/558 (41%), Positives = 351/558 (62%), Gaps = 7/558 (1%)

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
           + K +H  VL  GFE + F+   L++M+ +F L+ +A+ LFD MP R+  SW  MIS YC
Sbjct: 12  DGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYC 71

Query: 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVF 208
                 +AL++   M  EGV+ +  T ++VL  C     ++  + +H  +IK G E ++F
Sbjct: 72  QNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELF 131

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR-A 267
           V +ALI++YAK G L +A+ VF  +  +D+V WN++I G+AQN    EA+ +Y  M+   
Sbjct: 132 VSNALINMYAKFGSLGHAQKVFG-LLIKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHE 190

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDA 325
               +Q T  S+L A + +  L+ G ++H  V+K     D+ +   L+DMY KCG L+DA
Sbjct: 191 EIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDA 250

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
           +S+F ++ +K+ + W+ MIS    +G  ++AL+LF  MK  R+KP++IT V +L ACSH+
Sbjct: 251 ISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHS 310

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G V D    F  M++ YGI P  +HY CM+DL GRAG+L+ A   I +MP +PDA  W A
Sbjct: 311 GLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGA 370

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LL AC++H N +L   A++++  +D ++ G Y+LLSNIYAN  KW+ V +VR   R RG+
Sbjct: 371 LLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGL 430

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            K PG S I +N ++  F   + +HP+ ++I + L+ L  K+  +GY PD  +VLQD+E 
Sbjct: 431 RKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPDFCFVLQDVEE 490

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           ++KE  +  HSE+LAI +G++S +    IRI KNLR+CGDCHT  K  + +  + I++RD
Sbjct: 491 DEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTVTKFISIITEREIIVRD 550

Query: 626 PIRYHHFQDGNCSCGDYW 643
             R+HHF+ G CSCGDYW
Sbjct: 551 SSRFHHFKGGTCSCGDYW 568



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 104/290 (35%), Positives = 177/290 (61%), Gaps = 20/290 (6%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           V++AC  L+  +++HC ++K+GFE DVFV ++L+ +Y++ G + +A  +F++MP RD   
Sbjct: 3   VVKACGDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGS 62

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           WN++I G+ QN +  EAL++   M+  G   D  T+ SVL  C  +  +  G  +H++V+
Sbjct: 63  WNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVI 122

Query: 301 KY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K+  + +L ++NAL++MY K GSL  A  VF  +I KDV+SW+T+I+G AQNG + EA++
Sbjct: 123 KHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLASEAIE 181

Query: 359 LFESMKV-SRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKK------FYGIDPGREH 410
           ++  M+    I PN  T V +L A SH G ++ G   H + +K       F G       
Sbjct: 182 VYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVG------- 234

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            +C+ID+ G+ GKL +A+ L +++P   ++V W A++    VH + + A+
Sbjct: 235 -TCLIDMYGKCGKLDDAISLFYQVP-RKNSVPWNAMISCYGVHGDGEKAL 282



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 171/325 (52%), Gaps = 11/325 (3%)

Query: 36  TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL 95
            R+  S     + +C   +   A+     M+  GV+ D++T A ++  C     +   KL
Sbjct: 57  ARDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKL 116

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H +V+  G E E F+ N L+NM+ KF  L  AQ +F  +  ++VVSW T+I+ Y    +
Sbjct: 117 IHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGL 175

Query: 156 NDKALELLIFMLR-EGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRS 211
             +A+E+ + M   E + PN  T+ ++L A   +  L+Q   +H  +IK    SDVFV +
Sbjct: 176 ASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGT 235

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
            LID+Y K G+L +A  +F ++P ++ V WN++I  +  + D ++AL L++ MK      
Sbjct: 236 CLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKP 295

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMS 327
           D  T  S+L AC+   L+    Q   ++++ ++ +  +      ++D++ + G LE A +
Sbjct: 296 DHITFVSLLSACSHSGLVS-DAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFN 354

Query: 328 VFSRM-IQKDVISWSTMISGLAQNG 351
              +M IQ D  +W  +++    +G
Sbjct: 355 FIKKMPIQPDASAWGALLNACRIHG 379



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 112/266 (42%), Gaps = 46/266 (17%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           A+++   +H  V+      + F+   L++M+ K   L++A  LF Q+P +N V W  MIS
Sbjct: 211 ALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMIS 270

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVF 208
            Y      +KALEL   M  E V+P+  T+ ++L AC         H G++         
Sbjct: 271 CYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACS--------HSGLVS-------- 314

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTR-----DLVVWNSIIGGFAQNSDVDEALNLYKR 263
                           +A+  FN M         L  +  ++  F +  +++ A N  K+
Sbjct: 315 ----------------DAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKK 358

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALL-DMYCKCGSL 322
           M       D S   ++L AC     +ELG      + + D + +    LL ++Y   G  
Sbjct: 359 MP---IQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKW 415

Query: 323 EDAMSVFS----RMIQKDVISWSTMI 344
           E    V S    R ++K+   WS++I
Sbjct: 416 EGVDDVRSLARDRGLRKNP-GWSSII 440


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/580 (37%), Positives = 347/580 (59%), Gaps = 6/580 (1%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G   D ++    I+ C     ++  K VH +++  GFE +T   NIL++M+ K   L  A
Sbjct: 317 GFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAA 376

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           Q +FD    ++ V+W ++I+ Y  +    + LE    M  E  +P+  T+  +L     L
Sbjct: 377 QEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQL 435

Query: 189 IILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             + Q   +HC +IK GFE+++ + ++L+D+YAK GE+ +   VF+ M   D++ WN++I
Sbjct: 436 ADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVI 495

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YD 303
                  D      +   M+  G   D++T+  +L  C+ LA+   G ++H ++ K  ++
Sbjct: 496 ASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFE 555

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            ++ + NAL++MY KCGSLE+ + VF  M +KDV++W+ +IS     G  ++ALK F+ M
Sbjct: 556 SNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDM 615

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
           ++S + P+ +  +  +FACSH+G V++G   F  MK  Y ++P  EHY+C++DLL R+G 
Sbjct: 616 ELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGL 675

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L +A + I  MP +PDA  W ALL AC+   NT++A   +KKIL L+  D G Y+L+SNI
Sbjct: 676 LAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNI 735

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           YA   KWD+V  VR +M+ +G+ KEPG SWIE+ K+++ F   D S  Q DK+   L++L
Sbjct: 736 YATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYL 795

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
           ++ +   GY  D  + L D+E + K D +  HSE+LAI FGL++   G  + + KNLR+C
Sbjct: 796 VRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKPGSPLLVMKNLRVC 855

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GDCHT  K   K+  + I++RD  R+H F+DG CSCGD+W
Sbjct: 856 GDCHTVTKYITKIMQREILVRDANRFHRFKDGACSCGDHW 895



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/404 (30%), Positives = 220/404 (54%), Gaps = 10/404 (2%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
             +A+     M+   ++ D+ T+  +I  C     +E   +VH H +  GFE + ++ N 
Sbjct: 102 FTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNA 161

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           L++M+ +F  L+ A+ +F++M  R+ VSW ++IS YC     + AL++       G+ P+
Sbjct: 162 LIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPD 221

Query: 175 MFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
            FT S+VL AC SL+ +++   +H  I K+G   DV + + L+ +Y K   LR A  VF+
Sbjct: 222 CFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFS 281

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           +M  +D V WN++I G+AQ    + ++ L+  M   GF  D  ++TS +RAC     L++
Sbjct: 282 KMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQV 340

Query: 292 GTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G  VH +++   ++ D +  N L+DMY KCG L  A  VF     KD ++W+++I+G  Q
Sbjct: 341 GKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQ 400

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           +GY +E L+ F+ MK+ R KP+ +T V +L   S    +  G      + KF G +    
Sbjct: 401 SGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKF-GFEAELI 458

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             + ++D+  + G++ + +K+   M    D ++W  ++ A  VH
Sbjct: 459 IGNSLLDVYAKCGEMDDLLKVFSYMSAH-DIISWNTVI-ASSVH 500



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 134/461 (29%), Positives = 228/461 (49%), Gaps = 18/461 (3%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           R+S S     + +C       A+   H  +  G+  D  T + ++  C +  AV+E   V
Sbjct: 185 RDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAV 244

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H  +   G   +  + N LL+M+ KF  L EA+ +F +M  ++ V+W TMI  Y     +
Sbjct: 245 HGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRH 304

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSAL 213
           + +++L + M+ +G  P+M + ++ +RAC     L + + +H  +I  GFE D    + L
Sbjct: 305 EASVKLFMDMI-DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNIL 363

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           ID+YAK G+L  A+ VF+    +D V WNS+I G+ Q+    E L  +K MK      D 
Sbjct: 364 IDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDS 422

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
            T   +L   + LA +  G  +H  V+K  ++ +LI+ N+LLD+Y KCG ++D + VFS 
Sbjct: 423 VTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSY 482

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           M   D+ISW+T+I+            ++   M+   + P+  T++G+L  CS       G
Sbjct: 483 MSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQG 542

Query: 392 WN----HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
                  FKS     G +      + +I++  + G L+  +K+   M  E D VTW AL+
Sbjct: 543 KEIHGYIFKS-----GFESNVPIGNALIEMYSKCGSLENCIKVFKYMK-EKDVVTWTALI 596

Query: 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
            A  ++     A+ A +  + L    P +   ++ I+A S 
Sbjct: 597 SAFGMYGEGKKALKAFQD-MELSGVLPDSVAFIAFIFACSH 636



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/419 (29%), Positives = 214/419 (51%), Gaps = 19/419 (4%)

Query: 78  AELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF-SLLEEAQVLFDQMP 136
           + L+K   +     + + VH+ +++ G          L++ + +    +    V     P
Sbjct: 23  SSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISP 82

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHC 196
             NV  W ++I A     +  +AL     M  + ++P+ FT+ +V+ +C  ++ L +L C
Sbjct: 83  TNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDL-ELGC 141

Query: 197 GI----IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            +    +++GFESD+++ +ALID+Y++  +L NA  VF EM  RD V WNS+I G+  N 
Sbjct: 142 IVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNG 201

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNN 310
             ++AL++Y + +  G   D  T++SVL AC  L  ++ G  VH  +  +    D+I+ N
Sbjct: 202 FWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGN 261

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
            LL MY K   L +A  VFS+M  KD ++W+TMI G AQ G  + ++KLF  M +    P
Sbjct: 262 GLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-IDGFVP 320

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE--HYSC--MIDLLGRAGKLQE 426
           + ++I   + AC  +G ++ G    K + K Y I  G E    +C  +ID+  + G L  
Sbjct: 321 DMLSITSTIRACGQSGDLQVG----KFVHK-YLIGSGFECDTVACNILIDMYAKCGDLL- 374

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           A + + +     D+VTW +L+            + + K +      D  T++LL +I++
Sbjct: 375 AAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFS 433



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 21/224 (9%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D     + ++ M+  G+  D  T   ++  C       + K +H ++   GFE    + N
Sbjct: 503 DCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGN 562

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L+ M+ K   LE    +F  M E++VV+WT +ISA+       KAL+    M   GV P
Sbjct: 563 ALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLP 622

Query: 174 NMFTYSAVLRACDSLIILRQLHCGIIKVG------------FESDVFVRSALIDIYAKLG 221
           +   + A + AC         H G++K G             E  +   + ++D+ A+ G
Sbjct: 623 DSVAFIAFIFACS--------HSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSG 674

Query: 222 ELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRM 264
            L  AE     MP + D  +W +++       + + A  + K++
Sbjct: 675 LLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKI 718


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/667 (36%), Positives = 380/667 (56%), Gaps = 55/667 (8%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMH-AMQCHGVRA-DSVTYA 78
           FS    P +   NT+ R  S           + D PR    ++ +M   G+   ++ T+ 
Sbjct: 67  FSQIDCPNLFMWNTMIRGYS-----------RSDNPREAIVLYMSMIAKGIAPPNNFTFP 115

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
            L+  C    ++E    VH+H++  GFE + F+ N L++++  F  L  A+ LFD+   R
Sbjct: 116 FLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVR 175

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLH 195
           ++VS+ TMI  Y +    + AL L   M   G+ P+ FT+ A+   C  L    + +Q+H
Sbjct: 176 DLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIH 235

Query: 196 CGIIK--VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT------------------ 235
             + K     +S++ ++SA++D+YAK G +  AE VF+ M T                  
Sbjct: 236 AQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCG 295

Query: 236 --------------RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
                         RD++ W ++I G++Q     EAL L+K M+  G   D+ TL +VL 
Sbjct: 296 EINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLS 355

Query: 282 ACTGLALLELGTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--KD 336
           AC  L   +LG +++   ++   ++ + IL  A++DMY KCGS++ A+ +F R+ +  K 
Sbjct: 356 ACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKT 415

Query: 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
              +++MI+GLAQ+G  + A+ +F  +  + +KP+ +T VGVL AC H+G +E+G   F+
Sbjct: 416 GFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFE 475

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
           SM   YGI P  EHY CM+DLLGR G L+EA  L+ +MP+E ++V WRALL AC+ H N 
Sbjct: 476 SMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNV 535

Query: 457 DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEV 516
            +   A +K+L ++ Q    Y+LLSNI A++ +W+E  +VRK M   GI K PG S+IE+
Sbjct: 536 KIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIEL 595

Query: 517 NKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHS 576
              IH F  +D SHPQ  +I   LK +  +L   GY P+T  V+ D++ E+KE  + YHS
Sbjct: 596 GGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHS 655

Query: 577 EKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGN 636
           EKLA+ FGLM  +   TIRI KNLRIC DCH   KL +++  + I +RD +R+HHF++G+
Sbjct: 656 EKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGS 715

Query: 637 CSCGDYW 643
           CSC D+W
Sbjct: 716 CSCMDFW 722



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/437 (30%), Positives = 213/437 (48%), Gaps = 85/437 (19%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLL------EEAQVLFDQMPERNVVSWTTMISA 149
           +H   +  G   + F ++ L++    FSLL      + +++LF Q+   N+  W TMI  
Sbjct: 28  IHAQTIVNGLHHQIFSISRLISF---FSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRG 84

Query: 150 YCDAKMNDKALELLIFMLREGVR-PNMFTYSAVLRACDSLIILR---QLHCGIIKVGFES 205
           Y  +    +A+ L + M+ +G+  PN FT+  +L +C  L  L    ++H  IIK GFES
Sbjct: 85  YSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFES 144

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           D+FVR+ALI +Y+  G L  A  +F+E   RDLV +N++I G+A+ +  + AL L+  M+
Sbjct: 145 DLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQ 204

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK----YDHDLILNNALLDMYCKCGS 321
            +G   D+ T  ++   C+ L    +G Q+H  V K     D +++L +A++DMY KCG 
Sbjct: 205 NSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGL 264

Query: 322 LEDAMSVFS--------------------------------RMIQKDVISWSTMISGLAQ 349
           +  A  VFS                                 M ++DVISW+ MISG +Q
Sbjct: 265 INIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQ 324

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG-----------FVEDGWNHFKSM 398
            G   EAL+LF+ M+   IKP+ +T+V VL AC+  G           ++E+G  +  ++
Sbjct: 325 AGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTI 384

Query: 399 ---------KKFYGIDPGRE-------------HYSCMIDLLGRAGKLQEAVKLIHEM-- 434
                     K   ID   E              ++ MI  L + G  + A+ +  E+  
Sbjct: 385 LTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELIS 444

Query: 435 -PYEPDAVTWRALLGAC 450
              +PD VT+  +L AC
Sbjct: 445 TGLKPDEVTFVGVLCAC 461



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 168/336 (50%), Gaps = 12/336 (3%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE---LRNAECVFNEMPTRD 237
           +L +C S     Q+H   I  G    +F  S LI  ++ LG    L ++  +F+++   +
Sbjct: 15  LLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPN 74

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS-TLTSVLRACTGLALLELGTQVH 296
           L +WN++I G++++ +  EA+ LY  M   G A   + T   +L +C  L+ LE G +VH
Sbjct: 75  LFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVH 134

Query: 297 VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
            H++K  ++ DL + NAL+ +Y   G+L  A ++F   + +D++S++TMI G A+    +
Sbjct: 135 SHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPE 194

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSC 413
            AL LF  M+ S I P+  T V +   CS       G   H +  K    ID      S 
Sbjct: 195 SALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSA 254

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN-LDPQ 472
           ++D+  + G +  A ++   M     A  W +++  C   R  ++ +  A+K+ N +  +
Sbjct: 255 IVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMV--CGYARCGEINV--ARKLFNHMHER 310

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
           D  ++  + + Y+ + +  E  E+ K M A GI  +
Sbjct: 311 DVISWTAMISGYSQAGQCSEALELFKEMEALGIKPD 346


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/553 (40%), Positives = 348/553 (62%), Gaps = 6/553 (1%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H H+L  G +    + + L+N++ K  L   +  +FD+ P+++  +W+++ISA+   + 
Sbjct: 47  LHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEA 106

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSA 212
              AL+    ML +GVRP+   Y +  +AC  L    + + +HC  +K G+  DVFV S+
Sbjct: 107 PLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSS 166

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           L+D+YAK GE+ +A  +F+EMP R++V W+ +I G+AQ  D  EAL L+K+        +
Sbjct: 167 LVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVN 226

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
             T +SV+R C+    LELG  +H   LK  +D    + +AL+ +Y KCG +E A  VF 
Sbjct: 227 DFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFD 286

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            +  +++  W++M+   AQ+ ++Q    LFE M    +KPN+I  + VL+ACSHAG VE 
Sbjct: 287 EIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEK 346

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G  +F  M+  YGI+P  EHY+ ++DLLGRAGKLQEAV +I +MP  P    W ALL  C
Sbjct: 347 GREYFSLMRD-YGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGC 405

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
           ++H++T++A   A +IL +D    G ++LLSN YA + +++E A +RK +R RG+ KE G
Sbjct: 406 RIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETG 465

Query: 511 CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKED 570
            SW+E   ++H F   D SH +  +I + L+ L +++   GY  DT++VL+ ++GE+K +
Sbjct: 466 LSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEEKNE 525

Query: 571 SIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYH 630
           +I+YHSE+LAI FGL++   G+ IR+ KNLR+CGDCH   K  +K   + +++RD  R+H
Sbjct: 526 TIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFH 585

Query: 631 HFQDGNCSCGDYW 643
            F+DG CSCGDYW
Sbjct: 586 RFEDGKCSCGDYW 598



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/295 (32%), Positives = 154/295 (52%), Gaps = 6/295 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M   GVR D   Y    K C      +  K VH   +  G+  + F+ + L++
Sbjct: 110 ALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVD 169

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   + +A+ LFD+MPERNVVSW+ MI  Y       +AL L    L E V  N FT
Sbjct: 170 MYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFT 229

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +S+V+R C S   L   + +H   +K+ F+S  FV SALI +Y+K G +  A  VF+E+P
Sbjct: 230 FSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIP 289

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
           TR+L +WNS++   AQ++       L++ M   G   +     SVL AC+   L+E G +
Sbjct: 290 TRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGRE 349

Query: 295 VHVHVLKYDHDLILNN--ALLDMYCKCGSLEDAMSVFSRMIQKDVIS-WSTMISG 346
               +  Y  +    +  +L+D+  + G L++A+SV  +M  +   S W  +++G
Sbjct: 350 YFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTG 404



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 155/321 (48%), Gaps = 9/321 (2%)

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           QLH  I+K G ++   V   LI++Y+K      +  VF+E P +    W+S+I  FAQN 
Sbjct: 46  QLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNE 105

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNN 310
               AL  ++RM   G   D     S  +AC  L   ++G  VH   +K  Y  D+ + +
Sbjct: 106 APLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGS 165

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           +L+DMY KCG + DA  +F  M +++V+SWS MI G AQ     EAL LF+   +  +  
Sbjct: 166 SLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDV 225

Query: 371 NYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           N  T   V+  CS + F+E G   H   +K  +  D      S +I L  + G ++ A +
Sbjct: 226 NDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSF--DSSSFVGSALISLYSKCGVIEGAYQ 283

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489
           +  E+P     + W ++L AC  H +T       +++ N+  + P     LS +YA S  
Sbjct: 284 VFDEIPTRNLGL-WNSMLIACAQHAHTQRVFGLFEEMGNVGMK-PNFIXFLSVLYACSHA 341

Query: 490 W--DEVAEVRKTMRARGITKE 508
              ++  E    MR  GI  E
Sbjct: 342 GLVEKGREYFSLMRDYGIEPE 362



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 6/187 (3%)

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNALLDMYCKCGS 321
           + +  F  +   + ++L + T    L  G Q+H H+LK+    I  +++ L+++Y K   
Sbjct: 16  LNQNSFEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQL 75

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
              ++ VF    +K   +WS++IS  AQN     AL+ F  M    ++P+         A
Sbjct: 76  PLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKA 135

Query: 382 CSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
           C      + G + H  ++K  Y  D      S ++D+  + G++ +A  L  EMP E + 
Sbjct: 136 CGFLRRSDVGKSVHCLAVKTGYYCDVFVG--SSLVDMYAKCGEIGDARHLFDEMP-ERNV 192

Query: 441 VTWRALL 447
           V+W  ++
Sbjct: 193 VSWSGMI 199


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/613 (38%), Positives = 368/613 (60%), Gaps = 38/613 (6%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+  +  T+  L+K C    A  E + +H HVL  G++ + ++   L++M+V+   LE+A
Sbjct: 83  GLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDA 142

Query: 129 -------------------------------QVLFDQMPERNVVSWTTMISAYCDAKMND 157
                                          Q +FD++P ++VVSW  MIS Y +   N 
Sbjct: 143 RKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNK 202

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALI 214
           +ALEL   M++  VRP+  T  +V+ AC    S+ + RQ+H  I   GF S++ + +ALI
Sbjct: 203 EALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALI 262

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           D+Y K GE+  A  +F  +  +D++ WN++IGG+   +   EAL L++ M R+G + +  
Sbjct: 263 DLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDV 322

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKYDHDLI----LNNALLDMYCKCGSLEDAMSVFS 330
           T+ S+L AC  L  +E+G  +HV++ K    +        +L+DMY KCG +E A  VF 
Sbjct: 323 TMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFD 382

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            ++ + + SW+ MI G A +G +  A  +F  M+ + I+P+ IT VG+L ACSH+G ++ 
Sbjct: 383 SILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDL 442

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G + F+SMK+ Y I P  EHY CMIDLLG +G  +EA ++I+ M  EPD V W +LL AC
Sbjct: 443 GRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKAC 502

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
           K+H N +L    A+ ++ ++P++PG+Y+LLSNIYA + +W+EVA++R  +  +G+ K PG
Sbjct: 503 KMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPG 562

Query: 511 CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKED 570
           CS IE++  +H F + D  HP+  +I   L+ +   L   G+ PDT+ VLQ++E E KE 
Sbjct: 563 CSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEG 622

Query: 571 SIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYH 630
           ++++HSEKLAI FGL+S   G  + I KNLR+C +CH   KL +K+  + I+ RD  R+H
Sbjct: 623 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFH 682

Query: 631 HFQDGNCSCGDYW 643
           HF+DG CSC DYW
Sbjct: 683 HFRDGVCSCNDYW 695



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 226/450 (50%), Gaps = 44/450 (9%)

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHV---KFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
           +++H  ++  G     + ++ L+   V    F  L  A  +F+ + E N++ W TM   +
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 63

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDV 207
             +     AL L + M+  G+ PN +T+  +L++C      R   Q+H  ++K+G++ D+
Sbjct: 64  ALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDL 123

Query: 208 FVRSALIDIYAKLGELRNAECV-------------------------------FNEMPTR 236
           +V ++LI +Y + G L +A  V                               F+E+P +
Sbjct: 124 YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIK 183

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           D+V WN++I G+A+  +  EAL L+K M +     D+ST+ SV+ AC   A +ELG QVH
Sbjct: 184 DVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVH 243

Query: 297 VHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
             +    +  +L + NAL+D+Y KCG +E A  +F  +  KDVISW+T+I G       +
Sbjct: 244 SWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYK 303

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSC 413
           EAL LF+ M  S   PN +T++ +L AC+H G +E G W H    K+  G+     H + 
Sbjct: 304 EALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTS 363

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA--ICAAKKILNLDP 471
           +ID+  + G + EA + + +        +W A++    +H   + A  I +  +   ++P
Sbjct: 364 LIDMYAKCGDI-EAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEP 422

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
            D  T++ L +  ++S   D    + ++M+
Sbjct: 423 DDI-TFVGLLSACSHSGMLDLGRHIFRSMK 451



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 178/387 (45%), Gaps = 54/387 (13%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A++    M    VR D  T   ++  C    ++E  + VH+ +   GF     +VN L+
Sbjct: 203 EALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALI 262

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           ++++K   +E A  LF+ +  ++V+SW T+I  Y    +  +AL L   MLR G  PN  
Sbjct: 263 DLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDV 322

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFV-------------RSALIDIYAKLGEL 223
           T  ++L AC         H G I++G    V++             R++LID+YAK G++
Sbjct: 323 TMLSILPAC--------AHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDI 374

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
             A+ VF+ +  R L  WN++I GFA +   + A +++ RM++     D  T   +L AC
Sbjct: 375 EAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSAC 434

Query: 284 TGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           +   +L+LG  +    +K D+                            I   +  +  M
Sbjct: 435 SHSGMLDLGRHI-FRSMKEDYK---------------------------ITPKLEHYGCM 466

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           I  L  +G  +EA ++  +M+   ++P+ +    +L AC   G VE G ++ +++ K   
Sbjct: 467 IDLLGHSGLFKEAEEMINTME---MEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEP 523

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKL 430
            +PG   Y  + ++   AG+  E  K+
Sbjct: 524 KNPGS--YVLLSNIYATAGRWNEVAKI 548



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 141/295 (47%), Gaps = 38/295 (12%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALID---IYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           LR +H  +IK G  +  +  S LI+   +      L  A  VF  +   +L++WN++  G
Sbjct: 3   LRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHD 305
            A +SD   AL LY  M   G   +  T   +L++C        G Q+H HVLK  YD D
Sbjct: 63  HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 122

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQ------------------------------- 334
           L ++ +L+ MY + G LEDA  VF +                                  
Sbjct: 123 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPI 182

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
           KDV+SW+ MISG A+ G ++EAL+LF+ M  + ++P+  T+V V+ AC+ +  +E G   
Sbjct: 183 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELG-RQ 241

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
             S    +G     +  + +IDL  + G+++ A  L   + Y+ D ++W  L+G 
Sbjct: 242 VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK-DVISWNTLIGG 295


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/556 (40%), Positives = 345/556 (62%), Gaps = 9/556 (1%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H H++  G +    L + L+N + K  L   +  +F   P ++  +W+++IS++    +
Sbjct: 42  LHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHDSPHKSATTWSSVISSFAQNDL 101

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSA 212
              +L     MLR+GV P+   + +  ++C    SL + + LHC  +K  +  D+FV S+
Sbjct: 102 PLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSSLPVAKMLHCFALKTAYHLDIFVGSS 161

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR--MKRAGFA 270
           +ID+YAK G++  A  VF+EMP R++V W+ +I G+ Q  + DE+L L+KR  ++     
Sbjct: 162 VIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQLGEDDESLRLFKRFLVEEENEG 221

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSV 328
            +  TL+SVLR C G  LL++G  +H    K  +D    + ++L+ +Y KCG +E+A  V
Sbjct: 222 VNDFTLSSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDV 281

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK-VSRIKPNYITIVGVLFACSHAGF 387
           F  +  +++  W+ M+   AQ+ ++ +  +LF+ MK V  +K N+IT + VL+ACSHAG 
Sbjct: 282 FEEVTVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSVGGMKANFITFLCVLYACSHAGL 341

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           VE G  +F+ MK  YGI+PG +HYS M+DLLGRAGKL +AVKLI EMP EP    W ALL
Sbjct: 342 VEKGKYYFELMKD-YGIEPGTQHYSTMVDLLGRAGKLNDAVKLIEEMPMEPTESVWGALL 400

Query: 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507
             C++H NT LA   A ++  L     G +++LSN YA + +W+E A+ RK MR RGI K
Sbjct: 401 TGCRLHGNTKLASYVADRVSELGSVSSGLHVMLSNAYAAAGRWEEAAKARKMMRDRGIKK 460

Query: 508 EPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQ 567
           E G SW+E   +IH F   D SH +  +I   L  L +++   GY  DT++VL++++GE+
Sbjct: 461 ETGLSWVEEGNRIHTFAAGDRSHAKSVEIYDKLDELGEEMDKAGYVADTSFVLKEVDGEE 520

Query: 568 KEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPI 627
           K  SI+YHSE+LAI FG ++   G+ IR+ KNLR+CGDCHT  K  +K   + I++RD  
Sbjct: 521 KSRSIRYHSERLAIAFGFITFPHGQPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNN 580

Query: 628 RYHHFQDGNCSCGDYW 643
           R+H F+DG C+CGDYW
Sbjct: 581 RFHRFEDGKCTCGDYW 596



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 164/337 (48%), Gaps = 34/337 (10%)

Query: 40  SSLLDDFTRFCYQRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHN 98
           SS++  F     Q DLP  ++     M   GV  D   +    K C    ++  AK++H 
Sbjct: 90  SSVISSFA----QNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSSLPVAKMLHC 145

Query: 99  HVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
             L   +  + F+ + +++M+ K   +  A  +FD+MP RNVVSW+ +I  Y     +D+
Sbjct: 146 FALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQLGEDDE 205

Query: 159 ALELLIFML----REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRS 211
           +L L    L     EGV  N FT S+VLR C    +L   R +H    K  F+S  FV S
Sbjct: 206 SLRLFKRFLVEEENEGV--NDFTLSSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCFVAS 263

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR-AGFA 270
           +LI +Y+K G +  A  VF E+  R+L +WN+++   AQ++  D+   L+ +MK   G  
Sbjct: 264 SLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSVGGMK 323

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----------NALLDMYCKCG 320
           A+  T   VL AC+   L+E G        KY  +L+ +          + ++D+  + G
Sbjct: 324 ANFITFLCVLYACSHAGLVEKG--------KYYFELMKDYGIEPGTQHYSTMVDLLGRAG 375

Query: 321 SLEDAMSVFSRMIQKDVIS-WSTMISGLAQNGYSQEA 356
            L DA+ +   M  +   S W  +++G   +G ++ A
Sbjct: 376 KLNDAVKLIEEMPMEPTESVWGALLTGCRLHGNTKLA 412



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 154/331 (46%), Gaps = 18/331 (5%)

Query: 173 PNMFTYSAVLR-ACDSLIILR---------QLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           P+ F    + R  C++L+ L          QLH  IIK+G ++   +   LI+ Y+K   
Sbjct: 11  PHSFNQQPLYRNLCNTLLSLTFSRSLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHL 70

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
             ++  +F++ P +    W+S+I  FAQN     +LN ++ M R G   D     S  ++
Sbjct: 71  PYSSLQIFHDSPHKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKS 130

Query: 283 CTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           C  L+ L +   +H   LK  Y  D+ + ++++DMY KCG +  A +VF  M  ++V+SW
Sbjct: 131 CGILSSLPVAKMLHCFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSW 190

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKP--NYITIVGVLFACSHAGFVEDG-WNHFKS 397
           S +I G  Q G   E+L+LF+   V       N  T+  VL  C  +  ++ G   H  S
Sbjct: 191 SGLIYGYVQLGEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMGRLIHGLS 250

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457
            K  +  D      S +I L  + G ++EA  +  E+    +   W A+L AC  H +TD
Sbjct: 251 FKTSF--DSSCFVASSLISLYSKCGVVEEAYDVFEEVTVR-NLGMWNAMLIACAQHAHTD 307

Query: 458 LAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
                  K+ ++          L  +YA S 
Sbjct: 308 KTFELFDKMKSVGGMKANFITFLCVLYACSH 338


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/601 (38%), Positives = 365/601 (60%), Gaps = 7/601 (1%)

Query: 50  CY-QRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY + D+P  A+     M+  G + +       +K  +   +    K +H   +   ++ 
Sbjct: 223 CYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDT 282

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           E  +   LL+M+ K   +E+A  +F+ +P  +V+ W+ +IS Y  +  N++A E+ + M+
Sbjct: 283 EPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMM 342

Query: 168 REGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           R  V PN F+ S VL+AC ++  L    Q+H   IK+G+ES++FV +AL+D+YAK   + 
Sbjct: 343 RSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNME 402

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
           N+  +F+ +   + V WN+II G+ Q+   ++AL+++  M+ A   + Q T +SVLRAC 
Sbjct: 403 NSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACA 462

Query: 285 GLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
             + ++   Q+H  + K  +++D I+ N+L+D Y KCG + DA+ VF  +++ DV+SW++
Sbjct: 463 NTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNS 522

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           +IS  A +G +  AL+LF+ M  S IK N +T V +L  C   G V  G   F SM   +
Sbjct: 523 IISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDH 582

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            I P  EHY+C++ LLGRAG+L +A+K I ++P  P  + WRALL +C VH+N  L   A
Sbjct: 583 RIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYA 642

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A+K+L+++P D  TY+LLSN+YA +   DEVA  RK+MR  G+ KE G SW+E+  ++HA
Sbjct: 643 AEKVLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHA 702

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F+V  + HP +  IN  L+ L  K    GY PD N VL D++ E+K   +  HSE+LA+ 
Sbjct: 703 FSVGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALA 762

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           +GL     G  IRI KNLR C DCHT  K+ +K+  + I++RD  R+HHF++G CSCGDY
Sbjct: 763 YGLSMTPPGHPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDY 822

Query: 643 W 643
           W
Sbjct: 823 W 823



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/392 (31%), Positives = 211/392 (53%), Gaps = 16/392 (4%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGG--FEPETFLVNILLNMHVKFSLLEEA 128
           + DS   A  ++ C+AR      + VH  V+  G   + +TF  N+LLN + K   L  A
Sbjct: 42  KLDSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATA 101

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + LFD MPERN VS+ T++  Y      ++ALEL   + REG   N F  + +L+    L
Sbjct: 102 RRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKV---L 158

Query: 189 IILRQ--LHCGI----IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
           + +    L CGI     K+G + + FV +ALID Y+  G + +A CVF+ +  +D V W 
Sbjct: 159 VTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWT 218

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK- 301
           +++  +++N   + ALN + +M+  GF  +   LTS L+A   L+   LG  +H   +K 
Sbjct: 219 AMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKT 278

Query: 302 -YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
            YD +  +  ALLDMY KCG +EDA ++F  +   DVI WS +IS  AQ+  +++A ++F
Sbjct: 279 LYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMF 338

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420
             M  S + PN  ++ GVL AC++  F+E G     ++    G +      + ++D+  +
Sbjct: 339 LRMMRSFVVPNEFSLSGVLQACANIAFLELG-EQIHNLAIKLGYESELFVGNALMDMYAK 397

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALL-GACK 451
              ++ ++++   +  + + V+W  ++ G C+
Sbjct: 398 CRNMENSLEIFSSLQ-DANEVSWNTIIVGYCQ 428



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 222/422 (52%), Gaps = 7/422 (1%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN  S +     +  + +   A++    +Q  G   +      ++K  +   A   A  +
Sbjct: 111 RNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGI 170

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H      G +   F+   L++ +     +  A+ +FD +  ++ V+WT M+S Y +  + 
Sbjct: 171 HACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIP 230

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSAL 213
           + AL     M   G +PN F  ++ L+A     S ++ + +H   +K  ++++  V  AL
Sbjct: 231 EYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGAL 290

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           +D+YAK G++ +A  +F  +P  D+++W+ +I  +AQ+   ++A  ++ RM R+    ++
Sbjct: 291 LDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNE 350

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
            +L+ VL+AC  +A LELG Q+H   +K  Y+ +L + NAL+DMY KC ++E+++ +FS 
Sbjct: 351 FSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSS 410

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           +   + +SW+T+I G  Q+G++++AL +F  M+ + +    +T   VL AC++   ++  
Sbjct: 411 LQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHA 470

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
                S+ +    +      + +ID   + G +++A+K + E   E D V+W +++ A  
Sbjct: 471 -VQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALK-VFESIVECDVVSWNSIISAYA 528

Query: 452 VH 453
           +H
Sbjct: 529 LH 530



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 113/249 (45%), Gaps = 12/249 (4%)

Query: 22  SLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELI 81
           SL I   +   N ++ N+         +C       A+   H M+   + +  VT++ ++
Sbjct: 404 SLEIFSSLQDANEVSWNTI-----IVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVL 458

Query: 82  KCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVV 141
           + C    +++ A  +H+ +    F  +T + N L++ + K   + +A  +F+ + E +VV
Sbjct: 459 RACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVV 518

Query: 142 SWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ----LHCG 197
           SW ++ISAY        ALEL   M +  ++ N  T+ ++L  C S  ++ Q     +  
Sbjct: 519 SWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSM 578

Query: 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP-TRDLVVWNSIIGGFAQNSDVDE 256
           ++    +  +   + ++ +  + G L +A     ++P T   +VW +++     + +V  
Sbjct: 579 MMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNV-- 636

Query: 257 ALNLYKRMK 265
           AL  Y   K
Sbjct: 637 ALGRYAAEK 645


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/596 (39%), Positives = 356/596 (59%), Gaps = 42/596 (7%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA--QVLFDQMPERNVVSWTTMI 147
           + + K VH H+   G E   F++  LL    K  +  +   +++F Q+   N   WT +I
Sbjct: 52  INQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALI 111

Query: 148 SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVG-F 203
             Y       +++ L   M R+G+ P  FT++A+L+AC + +   + RQ+H   I +G F
Sbjct: 112 RGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGF 171

Query: 204 ESDVFVRSALIDIY-------------------------------AKLGELRNAECVFNE 232
            SD++V + LID+Y                               AK+G +  A  +F+ 
Sbjct: 172 GSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDG 231

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           +P +D+V W +++ G+AQN+   EAL +++RM+ AG   D+ TL  V+ AC  L   +  
Sbjct: 232 LPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYA 291

Query: 293 TQV----HVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
             V             ++++ +AL+DMY KCGS+EDA  VF RM +++V S+S+MI G A
Sbjct: 292 NWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFA 351

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
            +G +  A++LF+ M  + IKPN +T +GVL ACSHAG VE G   F  M++ +G+ P  
Sbjct: 352 MHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSE 411

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           +HY+CM+DLLGRAG+L+EA+ L+  MP  P    W ALLGAC++H N D+A  AA  +  
Sbjct: 412 DHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFE 471

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQ-IHAFNVAD 527
           L+P   G YILLSNIYA++ +WD+V++VRK MRA+G+ K PGCSW+E  K  IH F   D
Sbjct: 472 LEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGD 531

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
            SHP+  +I + L+ L+ +L  +GY P+ + V  D+  E+K+  +  HSEKLA+ FGL++
Sbjct: 532 MSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSEKLALAFGLLT 591

Query: 588 LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
              G TIRI KNLRIC DCH+     +++  + IV+RD +R+HHF+DG CSCG++W
Sbjct: 592 TNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRCSCGNFW 647



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 138/292 (47%), Gaps = 37/292 (12%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN--AECVFNEMPTRD 237
           +VL  C  +  ++Q+H  I + G E   FV + L+    KL    +     VF ++   +
Sbjct: 44  SVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPN 103

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
             +W ++I G+A      E++ LY  M+R G      T T++L+AC+    + LG QVH 
Sbjct: 104 PFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHT 163

Query: 298 HVL---KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST------------ 342
             +    +  DL + N L+DMY KCG L     VF  M+ +DVISW++            
Sbjct: 164 QTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNME 223

Query: 343 -------------------MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
                              M++G AQN   +EAL++FE M+ + +K + +T+VGV+ AC+
Sbjct: 224 AASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACA 283

Query: 384 HAGFVE-DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
             G  +   W    + +  +G        S +ID+  + G +++A K+   M
Sbjct: 284 QLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERM 335



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 144/311 (46%), Gaps = 42/311 (13%)

Query: 63  HAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH-VLSGGFEPETFLVNILLNMHVK 121
           ++M+  G+   S T+  L+K C A   V   + VH   +L GGF  + ++ N L++M+VK
Sbjct: 128 NSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVK 187

Query: 122 FSLL-------------------------------EEAQVLFDQMPERNVVSWTTMISAY 150
              L                               E A  LFD +P +++V+WT M++ Y
Sbjct: 188 CGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGY 247

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLH-----CGIIKVGFES 205
                  +ALE+   M   GV+ +  T   V+ AC  L   +  +           G  S
Sbjct: 248 AQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTS 307

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           +V V SALID+YAK G + +A  VF  M  R++  ++S+I GFA +     A+ L+  M 
Sbjct: 308 NVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEML 367

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNN----ALLDMYCKCGS 321
           +     ++ T   VL AC+   ++E G Q+   +++  H +  +      ++D+  + G 
Sbjct: 368 KTEIKPNRVTFIGVLTACSHAGMVEQGQQLFA-MMEECHGVAPSEDHYACMVDLLGRAGR 426

Query: 322 LEDAMSVFSRM 332
           LE+A+++   M
Sbjct: 427 LEEALNLVKMM 437



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 24/222 (10%)

Query: 52  QRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Q   PR A++    MQ  GV+ D VT   +I  C    A + A  V +     GF P + 
Sbjct: 249 QNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSN 308

Query: 111 LV--NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
           +V  + L++M+ K   +E+A  +F++M ERNV S+++MI  +    +   A+EL   ML+
Sbjct: 309 VVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLK 368

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVR------------SALIDI 216
             ++PN  T+  VL AC         H G+++ G +    +             + ++D+
Sbjct: 369 TEIKPNRVTFIGVLTACS--------HAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDL 420

Query: 217 YAKLGELRNAECVFNEMPTRD-LVVWNSIIGGFAQNSDVDEA 257
             + G L  A  +   MP      VW +++G    + + D A
Sbjct: 421 LGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMA 462


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/586 (38%), Positives = 363/586 (61%), Gaps = 8/586 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ   V  DS T+  L+K C     ++  + VH  V   GFE + F+ N L+ ++ K   
Sbjct: 110 MQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRR 169

Query: 125 LEEAQVLFD--QMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
           L  A+ +F+   +PER +VSWT ++SAY       +ALE+   M +  V+P+     +VL
Sbjct: 170 LGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVL 229

Query: 183 RACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
            A   L  L   R +H  ++K+G E++  +  +L  +YAK G++  A+ +F++M + +L+
Sbjct: 230 NAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLI 289

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
           +WN++I G+A+N    +A++L+  M       D  ++TS + AC  +  LE    +  +V
Sbjct: 290 LWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYV 349

Query: 300 LKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
            + D+  D+ +++AL+DM+ KCGS+E A SVF R + +DV+ WS MI G   +G ++EA+
Sbjct: 350 SRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAI 409

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
            L+ +M+   + PN +T +G+L AC+H+G V +GW  F  M   + I+P ++HY+C+IDL
Sbjct: 410 SLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMAD-HKINPQQQHYACIIDL 468

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           LGRAG L +A ++I  MP +P    W ALL ACK HR+ +L   AA+++ ++DP + G Y
Sbjct: 469 LGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHY 528

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           + LSN+YA ++ WD VAEVR  M+ +G+ K+ GCSW+EV  ++  F V D SHP+ ++I 
Sbjct: 529 VQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIE 588

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
           + ++ +  +L   G+  + +  L DL  E+ E+++  HSE++ I +GL+S  QG T+RI 
Sbjct: 589 RQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERITIAYGLISTPQGTTLRIT 648

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLR C +CH   KL +K+  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 649 KNLRACVNCHAATKLISKLVGREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/404 (30%), Positives = 203/404 (50%), Gaps = 23/404 (5%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+ +DS  YA LI     +  + +   +H  +L  G +   FL+  L++    +  +  A
Sbjct: 17  GIHSDSF-YASLIDSSTHKAQLRQ---IHARLLVLGLQFSGFLITKLIHASSSYGDITFA 72

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +FD +P   V  W  +I  Y        AL +   M    V P+ FT+  +L+AC  L
Sbjct: 73  RQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGL 132

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN--EMPTRDLVVWNS 243
             L   R +H  + ++GFE+DVFV++ LI +YAK   L  A  VF    +P R +V W +
Sbjct: 133 SHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTA 192

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY- 302
           I+  +AQN +  EAL ++ +M++     D   L SVL A T L  LE G  +H  V+K  
Sbjct: 193 IVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMG 252

Query: 303 ---DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
              + DL++  +L  MY KCG +  A  +F +M   ++I W+ MISG A+NG++++A+ L
Sbjct: 253 LETEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDL 310

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY---SCMID 416
           F  M    ++P+ I+I   + AC+  G +E      + M ++      R+     S +ID
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVGSLEQA----RWMDEYVSRSDYRDDVFISSALID 366

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           +  + G + E  + + +   + D V W A++    +H     AI
Sbjct: 367 MFAKCGSV-ECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAI 409



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 172/323 (53%), Gaps = 8/323 (2%)

Query: 170 GVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           G+  + F Y++++ +      LRQ+H  ++ +G +   F+ + LI   +  G++  A  V
Sbjct: 17  GIHSDSF-YASLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQV 75

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F+++P   +  WN+II G+++N+   +AL +Y +M+ A  + D  T   +L+AC GL+ L
Sbjct: 76  FDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHL 135

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS--RMIQKDVISWSTMIS 345
           ++G  VH  V +  ++ D+ + N L+ +Y KC  L  A +VF    + ++ ++SW+ ++S
Sbjct: 136 QMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVS 195

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
             AQNG   EAL++F  M+   +KP+ + +V VL A +    +E G +   S+ K  G++
Sbjct: 196 AYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKM-GLE 254

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
              +    +  +  + G++  A  L  +M   P+ + W A++     +     AI    +
Sbjct: 255 TEPDLLISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISGYAKNGFAKDAIDLFHE 313

Query: 466 ILNLDPQDPGTYILLSNIYANSQ 488
           ++N D + P T  + S I A +Q
Sbjct: 314 MINKDVR-PDTISITSAISACAQ 335



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 155/322 (48%), Gaps = 12/322 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+   V+ D V    ++        +E+ + +H  V+  G E E  L+  L  
Sbjct: 206 ALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNT 265

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +  A++LFD+M   N++ W  MIS Y        A++L   M+ + VRP+  +
Sbjct: 266 MYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTIS 325

Query: 178 YSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            ++ + AC    SL   R +   + +  +  DVF+ SALID++AK G +  A  VF+   
Sbjct: 326 ITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTL 385

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD+VVW+++I G+  +    EA++LY+ M+R G   +  T   +L AC    ++  G  
Sbjct: 386 DRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWW 445

Query: 295 VHVHVLKYDHDLILNN----ALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQ 349
               +   DH +         ++D+  + G L+ A  V   M +Q  V  W  ++S   +
Sbjct: 446 FFNRMA--DHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKK 503

Query: 350 NGYSQEALKLFESMKVSRIKPN 371
           + + +  L  + + ++  I P+
Sbjct: 504 HRHVE--LGKYAAQQLFSIDPS 523


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/653 (37%), Positives = 369/653 (56%), Gaps = 62/653 (9%)

Query: 49  FCYQRDLPRAMKAMHAMQC-HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           + +  D   A+   H M   H +  D ++   ++  C +  A    + VH   +  G   
Sbjct: 338 YMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVD 397

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           + F+ N +++M+ K   +EEA  +F +M  ++VVSW  M++ Y  A   + AL L   M 
Sbjct: 398 DVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMT 457

Query: 168 REGVRPNMFTYSAVL-------RACDSLIILRQL-------------------------- 194
            E +  ++ T++AV+       + C++L + RQ+                          
Sbjct: 458 EENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALL 517

Query: 195 -----HCGIIKVGFE--------SDVFVRSALIDIYAKLGELRNAECVFNEMPT--RDLV 239
                HC  IK             D+ V + LID+YAK      A  +F+ +    RD+V
Sbjct: 518 HGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVV 577

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS------TLTSVLRACTGLALLELGT 293
            W  +IGG+AQ+ D + AL L+  M    F  D+S      TL+  L AC  LA L  G 
Sbjct: 578 TWTVMIGGYAQHGDANNALQLFSGM----FKMDKSIKPNDFTLSCALVACARLAALRFGR 633

Query: 294 QVHVHVLKYDHD---LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
           QVH +VL+  +    L + N L+DMY K G ++ A  VF  M Q++ +SW+++++G   +
Sbjct: 634 QVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMH 693

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
           G  ++AL++F+ M+   + P+ IT + VL+ACSH+G V+ G N F  M K +G+DPG EH
Sbjct: 694 GRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEH 753

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
           Y+CM+DL GRAG+L EA+KLI+EMP EP  V W ALL AC++H N +L   AA ++L L+
Sbjct: 754 YACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELE 813

Query: 471 PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSH 530
             + G+Y LLSNIYAN+++W +VA +R TM+  GI K PGCSWI+  K +  F V D SH
Sbjct: 814 SGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSH 873

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           PQ  +I + L  LIQ++  +GY P T++ L D++ E+K D +  HSEKLA+ +G+++L  
Sbjct: 874 PQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTLHP 933

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
              IRI KNLRICGDCH+     +K+    I++RD  R+HHF++G+CSC  YW
Sbjct: 934 RAPIRITKNLRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 142/491 (28%), Positives = 233/491 (47%), Gaps = 61/491 (12%)

Query: 56  PRAMKAMH-AMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           PR +  ++  M+  G   D  T+  + K C    ++     +H  V   GF    F+ N 
Sbjct: 240 PRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNA 299

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNV---VSWTTMISAYCDAKMNDKALELLIFM-LREG 170
           +++M+ K   L  A  +FD +  R +   VSW +++SAY  A   + AL L   M  R  
Sbjct: 300 VVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHL 359

Query: 171 VRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
           + P++ +   +L AC SL   +  RQ+H   I+ G   DVFV +A++D+YAK G++  A 
Sbjct: 360 MSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEAN 419

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR--------------AGFA--- 270
            VF  M  +D+V WN+++ G++Q   ++ AL+L++RM                 G+A   
Sbjct: 420 KVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRG 479

Query: 271 ------------------ADQSTLTSVLRACTGLALLELGTQVHVHVLKY---------- 302
                              +  TL S+L AC  +  L  G + H + +K+          
Sbjct: 480 QGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPG 539

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK--DVISWSTMISGLAQNGYSQEALKLF 360
             DL + N L+DMY KC S E A  +F  +  K  DV++W+ MI G AQ+G +  AL+LF
Sbjct: 540 ADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLF 599

Query: 361 ESM-KVSR-IKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDL 417
             M K+ + IKPN  T+   L AC+    +  G   H   ++ FYG        +C+ID+
Sbjct: 600 SGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYG-SVMLFVANCLIDM 658

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
             ++G +  A  +   MP + +AV+W +L+    +H   + A+    ++  + P  P   
Sbjct: 659 YSKSGDVDTAQIVFDNMP-QRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKV-PLVPDGI 716

Query: 478 ILLSNIYANSQ 488
             L  +YA S 
Sbjct: 717 TFLVVLYACSH 727



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 198/437 (45%), Gaps = 56/437 (12%)

Query: 88  HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER--NVVSWTT 145
           +++  AKL+H   +  G      L   L+  ++  +    A +L +++P    +V  W  
Sbjct: 172 NSLAHAKLLHQQSIMQGLL--FHLATNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQ 229

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQL---HCGIIKVG 202
           +I              L   M   G  P+ +T+  V +AC +L  L      H  + + G
Sbjct: 230 LIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSG 289

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTR---DLVVWNSIIGGFAQNSDVDEALN 259
           F S+VFV +A++ +Y K G LR+A  +F+++  R   DLV WNS++  +   SD + AL 
Sbjct: 290 FASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALA 349

Query: 260 LYKRMK-RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMY 316
           L+ +M  R   + D  +L ++L AC  LA    G QVH   ++     D+ + NA++DMY
Sbjct: 350 LFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMY 409

Query: 317 CKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI-------- 368
            KCG +E+A  VF RM  KDV+SW+ M++G +Q G  + AL LFE M    I        
Sbjct: 410 AKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWT 469

Query: 369 ---------------------------KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
                                      +PN +T+V +L AC   G +  G        KF
Sbjct: 470 AVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKF 529

Query: 402 Y----GIDPGREHYSC---MIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLGACKVH 453
                G DPG +       +ID+  +    + A K+   + P + D VTW  ++G    H
Sbjct: 530 ILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQH 589

Query: 454 RNTDLAICAAKKILNLD 470
            + + A+     +  +D
Sbjct: 590 GDANNALQLFSGMFKMD 606



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 130/275 (47%), Gaps = 14/275 (5%)

Query: 182 LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV- 240
           L+ C+SL   + LH   I  G      + + LI  Y        A  +   +P     V 
Sbjct: 168 LKECNSLAHAKLLHQQSIMQGLL--FHLATNLIGTYIASNSTAYAILLLERLPPSPSSVF 225

Query: 241 -WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
            WN +I          +   LY++MK  G+  D  T   V +AC  L+ L LG  +H  V
Sbjct: 226 WWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATV 285

Query: 300 LK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQ 354
            +  +  ++ + NA++ MY KCG+L  A ++F  +  +   D++SW++++S       + 
Sbjct: 286 SRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDAN 345

Query: 355 EALKLFESMKVSRI-KPNYITIVGVLFAC-SHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            AL LF  M    +  P+ I++V +L AC S A  +     H  S++   G+       +
Sbjct: 346 TALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRS--GLVDDVFVGN 403

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
            ++D+  + GK++EA K+   M ++ D V+W A++
Sbjct: 404 AVVDMYAKCGKMEEANKVFQRMKFK-DVVSWNAMV 437


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/578 (37%), Positives = 356/578 (61%), Gaps = 6/578 (1%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           + D +T   +++ C     +E  K VH+++++ G+E +T   NIL+NM+ K   L  +Q 
Sbjct: 372 KPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQE 431

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           +F  M  ++ VSW +MI+ Y      D+A++L   M++  V+P+  TY  +L     L  
Sbjct: 432 VFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGD 490

Query: 191 L---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L   ++LHC + K+GF S++ V + L+D+YAK GE+ ++  VF  M  RD++ WN+II  
Sbjct: 491 LXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIAS 550

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHD 305
              + D +  L +  RM+  G   D +T+ S+L  C+ LA    G ++H  +  L  + D
Sbjct: 551 CVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESD 610

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           + + N L++MY KCGSL ++  VF  M  KDV++W+ +IS     G  ++A++ F  M+ 
Sbjct: 611 VPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEA 670

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
           + I P+++  V ++FACSH+G VE+G N+F  MKK Y I+P  EHY+C++DLL R+  L 
Sbjct: 671 AGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLD 730

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           +A   I  MP +PD+  W ALL AC++  +T++A   +++I+ L+P D G Y+L+SN+YA
Sbjct: 731 KAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYA 790

Query: 486 NSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQ 545
              KWD+V  +RK+++ARG+ K+PGCSW+E+  +++ F        Q +++NK L  L  
Sbjct: 791 ALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGMLAG 850

Query: 546 KLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGD 605
            +   GY  +  +VL D++ ++K D +  HSE+LAI FGL++   G  +++ KNLR+C D
Sbjct: 851 LMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCED 910

Query: 606 CHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           CHT  K  +K+  + +++RD  R+H F+DG CSCGDYW
Sbjct: 911 CHTVTKYISKIXQRELLVRDANRFHVFKDGACSCGDYW 948



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 129/396 (32%), Positives = 224/396 (56%), Gaps = 9/396 (2%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           ++ D+ T+  +I  C      E AK +H+ VL  GF  + ++ N L++M+ +F+ L++A+
Sbjct: 170 LQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKAR 229

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            +F++MP R+VVSW ++IS Y      ++ALE+       GV P+ +T S+VLRAC  L 
Sbjct: 230 KVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLG 289

Query: 190 ILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            + +   +H  I K+G + DV V + L+ +Y K   L +   +F++M  RD V WN++I 
Sbjct: 290 SVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMIC 349

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDH 304
           G++Q    +E++ L+  M    F  D  T+TS+L+AC  L  LE G  VH +++   Y+ 
Sbjct: 350 GYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYEC 408

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           D   +N L++MY KCG+L  +  VFS M  KD +SW++MI+   QNG   EA+KLF+ MK
Sbjct: 409 DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK 468

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
            + +KP+ +T V +L   +  G +  G      + K  G +      + ++D+  + G++
Sbjct: 469 -TDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKM-GFNSNIVVSNTLVDMYAKCGEM 526

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            +++K+   M    D +TW  ++ +C    + +L +
Sbjct: 527 GDSLKVFENMKAR-DIITWNTIIASCVHSEDCNLGL 561



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 135/413 (32%), Positives = 212/413 (51%), Gaps = 49/413 (11%)

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILR 192
           P  NV  W ++I A     +  +AL L     R  ++P+ +T+ +V+ AC  L+   + +
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 194

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            +H  ++ +GF SD+++ +ALID+Y +  +L  A  VF EMP RD+V WNS+I G+  N 
Sbjct: 195 SIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 254

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNN 310
             +EAL +Y R +  G   D  T++SVLRAC GL  +E G  +H  +  +    D+I+NN
Sbjct: 255 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNN 314

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
            LL MYCK   L D   +F +M+ +D +SW+TMI G +Q G  +E++KLF  M V++ KP
Sbjct: 315 GLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKP 373

Query: 371 NYITIVGVLFACSHAGFVEDG-----------------------------WNHFKSMKKF 401
           + +TI  +L AC H G +E G                              N   S + F
Sbjct: 374 DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVF 433

Query: 402 YGID-PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE--PDAVTWRALLGACKVHRNTDL 458
            G+       ++ MI++  + G   EA+KL   M  +  PD+VT+  LL       +T L
Sbjct: 434 SGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSM-----STQL 488

Query: 459 AICAAKKILNLDPQDPG--TYILLSN----IYANSQKWDEVAEVRKTMRARGI 505
                 K L+ D    G  + I++SN    +YA   +  +  +V + M+AR I
Sbjct: 489 GDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDI 541



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 221/410 (53%), Gaps = 9/410 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++  +  +  GV  DS T + +++ C    +VEE  ++H  +   G + +  + N LL+
Sbjct: 259 ALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLS 318

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ KF+ L + + +FD+M  R+ VSW TMI  Y    + +++++L + M+ +  +P++ T
Sbjct: 319 MYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLT 377

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            +++L+AC  L  L   + +H  +I  G+E D    + LI++YAK G L  ++ VF+ M 
Sbjct: 378 ITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMK 437

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            +D V WNS+I  + QN   DEA+ L+K MK      D  T   +L   T L  L LG +
Sbjct: 438 CKDSVSWNSMINVYIQNGSFDEAMKLFKMMK-TDVKPDSVTYVMLLSMSTQLGDLXLGKE 496

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  + K  ++ +++++N L+DMY KCG + D++ VF  M  +D+I+W+T+I+    +  
Sbjct: 497 LHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSED 556

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
               L++   M+   + P+  T++ +L  CS       G      + K  G++      +
Sbjct: 557 CNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL-GLESDVPVGN 615

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            +I++  + G L+ + ++   M  + D VTW AL+ AC ++     A+ A
Sbjct: 616 VLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISACGMYGEGKKAVRA 664



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 21/227 (9%)

Query: 51  YQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           +  D    ++ +  M+  GV  D  T   ++  C    A  + K +H  +   G E +  
Sbjct: 553 HSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVP 612

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           + N+L+ M+ K   L  +  +F  M  ++VV+WT +ISA        KA+     M   G
Sbjct: 613 VGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAG 672

Query: 171 VRPNMFTYSAVLRACDSLIILRQLHCGIIKVGF------------ESDVFVRSALIDIYA 218
           + P+   + A++ AC         H G+++ G             E  +   + ++D+ +
Sbjct: 673 IVPDHVAFVAIIFACS--------HSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLS 724

Query: 219 KLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRM 264
           +   L  AE     MP + D  +W +++     + D + A  + +R+
Sbjct: 725 RSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERI 771


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/620 (39%), Positives = 363/620 (58%), Gaps = 11/620 (1%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVE 91
           + I   +S L +   R      LP +++     M C G RAD+ TY  ++K C     VE
Sbjct: 119 DGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVE 178

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
             + VH+ V+  G E + ++ N LL M+ KF  +  A+++FD+M ER++ SW TMIS Y 
Sbjct: 179 IGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGY- 237

Query: 152 DAKMNDKALELLIF--MLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFES- 205
            AK  D     L+F  M + G+  +  T   +L AC  L  +++   +H   ++    + 
Sbjct: 238 -AKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNY 296

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           + F  ++LI++Y     + +A  +F  +  +D V WNS+I G+A+N D  E+L L++RM 
Sbjct: 297 NKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMA 356

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLE 323
             G   DQ T  +VL AC  +A L  G  +H +++K  +D + I+  AL+DMY KCGSL 
Sbjct: 357 LDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLA 416

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
            +  VF  M  K ++SWS M++G   +G  +EA+ + + MK + + P+      +L ACS
Sbjct: 417 CSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACS 476

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
           HAG V +G   F  M+K Y + P   HYSCM+DLLGRAG L EA  +I  M  +P +  W
Sbjct: 477 HAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIW 536

Query: 444 RALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503
            ALL A ++H+N  LA  +A+K+ +++P+   +YI LSNIYA  ++WD+V  VR  +R +
Sbjct: 537 AALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRK 596

Query: 504 GITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDL 563
           G+ K PGCS+IE++  +H F V D SH Q + I   L  L Q+L   GY PDT+ V  D+
Sbjct: 597 GLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYDV 656

Query: 564 EGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVI 623
           E E KE  +  HSE+LAI F L++   G  IRI KNLR+CGDCHT  KL +++  + I++
Sbjct: 657 EEEVKEKMLWDHSERLAIAFALINTGPGTVIRITKNLRVCGDCHTVTKLISELTGREIIM 716

Query: 624 RDPIRYHHFQDGNCSCGDYW 643
           RD  R+HHF  G CSCGDYW
Sbjct: 717 RDIHRFHHFIKGFCSCGDYW 736



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 129/428 (30%), Positives = 229/428 (53%), Gaps = 14/428 (3%)

Query: 44  DDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAE---LIKCCLARHAVEEAKLVHNHV 100
           + FT    Q D+ + ++   +M+ H ++   +T  +   L++      + ++ + +H H+
Sbjct: 26  NSFTSHFSQGDVAQMVERSLSMREHPLQQYPLTSLQCGALLQSFTNTKSFKQGQQLHAHM 85

Query: 101 LSGG-FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           +S    E  T+L   L   +    L+ +A+V+FD +  +N   W  MI  Y    +  K+
Sbjct: 86  ISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKS 145

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDI 216
           L L   ML  G R + FTY  VL+AC  L+++   R++H  ++  G ESD++V ++L+ +
Sbjct: 146 LVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAM 205

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           YAK G++  A  VF+ M  RDL  WN++I G+A+N+D   A  ++  M +AG  AD +TL
Sbjct: 206 YAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTL 265

Query: 277 TSVLRACTGLALLELGTQVHVHVLKY---DHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
             +L AC  L  ++ G  +H + ++    +++    N+L++MYC C  + DA  +F R+ 
Sbjct: 266 LGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVR 325

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393
            KD +SW++MI G A+NG + E+L+LF  M +    P+ +T + VL AC     +  G +
Sbjct: 326 WKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMS 385

Query: 394 -HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
            H   +KK  G D      + ++D+  + G L  + ++  EMP +   V+W A++    +
Sbjct: 386 IHSYLVKK--GFDANTIVGTALVDMYSKCGSLACSRRVFDEMP-DKSLVSWSAMVAGYGL 442

Query: 453 HRNTDLAI 460
           H     AI
Sbjct: 443 HGRGREAI 450


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/578 (37%), Positives = 356/578 (61%), Gaps = 6/578 (1%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           + D +T   +++ C     +E  K VH+++++ G+E +T   NIL+NM+ K   L  +Q 
Sbjct: 313 KPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQE 372

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           +F  M  ++ VSW +MI+ Y      D+A++L   M++  V+P+  TY  +L     L  
Sbjct: 373 VFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGD 431

Query: 191 L---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L   ++LHC + K+GF S++ V + L+D+YAK GE+ ++  VF  M  RD++ WN+II  
Sbjct: 432 LHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIAS 491

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHD 305
              + D +  L +  RM+  G   D +T+ S+L  C+ LA    G ++H  +  L  + D
Sbjct: 492 CVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESD 551

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           + + N L++MY KCGSL ++  VF  M  KDV++W+ +IS     G  ++A++ F  M+ 
Sbjct: 552 VPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEA 611

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
           + I P+++  V ++FACSH+G VE+G N+F  MKK Y I+P  EHY+C++DLL R+  L 
Sbjct: 612 AGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLD 671

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           +A   I  MP +PD+  W ALL AC++  +T++A   +++I+ L+P D G Y+L+SNIYA
Sbjct: 672 KAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYA 731

Query: 486 NSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQ 545
              KWD+V  +RK+++ARG+ K+PGCSW+E+  +++ F        Q +++NK L  L  
Sbjct: 732 ALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAG 791

Query: 546 KLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGD 605
            +   GY  +  +VL D++ ++K D +  HSE+LAI FGL++   G  +++ KNLR+C D
Sbjct: 792 LMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCED 851

Query: 606 CHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           CHT  K  +K+  + +++RD  R+H F+DG CSCGDYW
Sbjct: 852 CHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 889



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 129/396 (32%), Positives = 224/396 (56%), Gaps = 9/396 (2%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           ++ D+ T+  +I  C      E AK +H+ VL  GF  + ++ N L++M+ +F+ L++A+
Sbjct: 111 LQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKAR 170

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            +F++MP R+VVSW ++IS Y      ++ALE+       GV P+ +T S+VLRAC  L 
Sbjct: 171 KVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLG 230

Query: 190 ILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            + +   +H  I K+G + DV V + L+ +Y K   L +   +F++M  RD V WN++I 
Sbjct: 231 SVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMIC 290

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDH 304
           G++Q    +E++ L+  M    F  D  T+TS+L+AC  L  LE G  VH +++   Y+ 
Sbjct: 291 GYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYEC 349

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           D   +N L++MY KCG+L  +  VFS M  KD +SW++MI+   QNG   EA+KLF+ MK
Sbjct: 350 DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK 409

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
            + +KP+ +T V +L   +  G +  G      + K  G +      + ++D+  + G++
Sbjct: 410 -TDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKM-GFNSNIVVSNTLVDMYAKCGEM 467

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            +++K+   M    D +TW  ++ +C    + +L +
Sbjct: 468 GDSLKVFENMKAR-DIITWNTIIASCVHSEDCNLGL 502



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 135/413 (32%), Positives = 212/413 (51%), Gaps = 49/413 (11%)

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILR 192
           P  NV  W ++I A     +  +AL L     R  ++P+ +T+ +V+ AC  L+   + +
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            +H  ++ +GF SD+++ +ALID+Y +  +L  A  VF EMP RD+V WNS+I G+  N 
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNN 310
             +EAL +Y R +  G   D  T++SVLRAC GL  +E G  +H  +  +    D+I+NN
Sbjct: 196 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNN 255

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
            LL MYCK   L D   +F +M+ +D +SW+TMI G +Q G  +E++KLF  M V++ KP
Sbjct: 256 GLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKP 314

Query: 371 NYITIVGVLFACSHAGFVEDG-----------------------------WNHFKSMKKF 401
           + +TI  +L AC H G +E G                              N   S + F
Sbjct: 315 DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVF 374

Query: 402 YGID-PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE--PDAVTWRALLGACKVHRNTDL 458
            G+       ++ MI++  + G   EA+KL   M  +  PD+VT+  LL       +T L
Sbjct: 375 SGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSM-----STQL 429

Query: 459 AICAAKKILNLDPQDPG--TYILLSN----IYANSQKWDEVAEVRKTMRARGI 505
                 K L+ D    G  + I++SN    +YA   +  +  +V + M+AR I
Sbjct: 430 GDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDI 482



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 221/411 (53%), Gaps = 9/411 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A++  +  +  GV  DS T + +++ C    +VEE  ++H  +   G + +  + N LL
Sbjct: 199 EALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLL 258

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ KF+ L + + +FD+M  R+ VSW TMI  Y    + +++++L + M+ +  +P++ 
Sbjct: 259 SMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLL 317

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T +++L+AC  L  L   + +H  +I  G+E D    + LI++YAK G L  ++ VF+ M
Sbjct: 318 TITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM 377

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +D V WNS+I  + QN   DEA+ L+K MK      D  T   +L   T L  L LG 
Sbjct: 378 KCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK-TDVKPDSVTYVMLLSMSTQLGDLHLGK 436

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           ++H  + K  ++ +++++N L+DMY KCG + D++ VF  M  +D+I+W+T+I+    + 
Sbjct: 437 ELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSE 496

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
                L++   M+   + P+  T++ +L  CS       G      + K  G++      
Sbjct: 497 DCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL-GLESDVPVG 555

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           + +I++  + G L+ + ++   M  + D VTW AL+ AC ++     A+ A
Sbjct: 556 NVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISACGMYGEGKKAVRA 605



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 21/227 (9%)

Query: 51  YQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           +  D    ++ +  M+  GV  D  T   ++  C    A  + K +H  +   G E +  
Sbjct: 494 HSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVP 553

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           + N+L+ M+ K   L  +  +F  M  ++VV+WT +ISA        KA+     M   G
Sbjct: 554 VGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAG 613

Query: 171 VRPNMFTYSAVLRACDSLIILRQLHCGIIKVGF------------ESDVFVRSALIDIYA 218
           + P+   + A++ AC         H G+++ G             E  +   + ++D+ +
Sbjct: 614 IVPDHVAFVAIIFACS--------HSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLS 665

Query: 219 KLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRM 264
           +   L  AE     MP + D  +W +++     + D + A  + +R+
Sbjct: 666 RSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERI 712


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/588 (38%), Positives = 359/588 (61%), Gaps = 8/588 (1%)

Query: 62  MHAMQCHGVRADSVTYAELIKCCLA-RHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHV 120
           M  ++C G++ D  T   ++K   +    +  +K VH H +      ++F+   L++ + 
Sbjct: 405 MQLLRC-GLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYS 463

Query: 121 KFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSA 180
           +   ++EA++LF++    ++V+W  M++ Y  +    K L+L   M ++G R + FT + 
Sbjct: 464 RNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLAT 522

Query: 181 VLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           V + C  L  +   +Q+H   IK G++ D++V S ++D+Y K G++  A+  F+ +P  D
Sbjct: 523 VFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPD 582

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
            V W ++I G  +N + + A +++ +M+  G   D+ T+ ++ +A + L  LE G Q+H 
Sbjct: 583 DVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHA 642

Query: 298 HVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           + LK +  +D  +  +L+DMY KCGS++DA  +F R+   ++ +W+ M+ GLAQ+G  +E
Sbjct: 643 NALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKE 702

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
            L+LF+ MK   IKP+ +T +GVL ACSH+G V + + H +SM   YGI P  EHYSC+ 
Sbjct: 703 TLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLA 762

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           D LGRAG +++A  LI  M  E  A  +R LL AC+V  +T+     A K+L L+P D  
Sbjct: 763 DALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSS 822

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
            Y+LLSN+YA + KWDE+   R  M+   + K+PG SWIEV  +IH F V D S+ Q + 
Sbjct: 823 AYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTEL 882

Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
           I + +K +I+ +   GY P+T++ L D+E E+KE ++ YHSEKLA+ FGL+S      IR
Sbjct: 883 IYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIR 942

Query: 596 IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + KNLR+CGDCH   K  AK+ N+ IV+RD  R+H F+DG CSCGDYW
Sbjct: 943 VIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 131/442 (29%), Positives = 225/442 (50%), Gaps = 17/442 (3%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V  D VT+  ++   +   ++   + VH   L  G +    + N L+NM+ K      A+
Sbjct: 311 VECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFAR 370

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS-- 187
            +FD M ER+++SW ++I+      +  +A+ L + +LR G++P+ +T ++VL+A  S  
Sbjct: 371 TVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLP 430

Query: 188 --LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             L + +Q+H   IK+   SD FV +ALID Y++   ++ AE +F E    DLV WN+++
Sbjct: 431 EGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF-ERHNFDLVAWNAMM 489

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YD 303
            G+ Q+ D  + L L+  M + G  +D  TL +V + C  L  +  G QVH + +K  YD
Sbjct: 490 AGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYD 549

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            DL +++ +LDMY KCG +  A   F  +   D ++W+TMISG  +NG  + A  +F  M
Sbjct: 550 LDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQM 609

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           ++  + P+  TI  +  A S    +E G   H  ++K     DP     + ++D+  + G
Sbjct: 610 RLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVG--TSLVDMYAKCG 667

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN--TDLAICAAKKILNLDPQDPGTYILL 480
            + +A  L   +    +   W A+L     H      L +    K L + P D  T+I +
Sbjct: 668 SIDDAYCLFKRIEM-MNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKP-DKVTFIGV 725

Query: 481 SNIYANSQKWDEVAEVRKTMRA 502
            +  ++S     V+E  K MR+
Sbjct: 726 LSACSHSGL---VSEAYKHMRS 744



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 162/341 (47%), Gaps = 34/341 (9%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D  + +K    M   G R+D  T A + K C    A+ + K VH + +  G++ + ++ +
Sbjct: 497 DGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSS 556

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            +L+M+VK   +  AQ  FD +P  + V+WTTMIS   +    ++A  +   M   GV P
Sbjct: 557 GILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLP 616

Query: 174 NMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           + FT + + +A   L  L   RQ+H   +K+   +D FV ++L+D+YAK G + +A C+F
Sbjct: 617 DEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLF 676

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
             +   ++  WN+++ G AQ+ +  E L L+K+MK  G   D+ T   VL AC+   L+ 
Sbjct: 677 KRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVS 736

Query: 291 LGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
              + H+  +  D+                            I+ ++  +S +   L + 
Sbjct: 737 EAYK-HMRSMHGDYG---------------------------IKPEIEHYSCLADALGRA 768

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           G  ++A  L ESM +      Y T+   L AC   G  E G
Sbjct: 769 GLVKQAENLIESMSMEASASMYRTL---LAACRVQGDTETG 806



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 182/406 (44%), Gaps = 41/406 (10%)

Query: 50  CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPET 109
           C   ++ +A      ++   V    +T + ++K CL    V  ++  H +    G + + 
Sbjct: 121 CVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDE 180

Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
           F+   L+N+++KF  ++E +VLF++MP R+VV W  M+ AY +    ++A++L       
Sbjct: 181 FVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSS 240

Query: 170 GVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           G+ PN  T   + R                  G +SD              G++++    
Sbjct: 241 GLNPNEITLRLLARIS----------------GDDSDA-------------GQVKSFANG 271

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
            +     +++  N  +  +  +      L  +  M  +    DQ T   +L     +  L
Sbjct: 272 NDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSL 331

Query: 290 ELGTQVHVHVLKYDHDLIL--NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
            LG QVH   LK   DL+L  +N+L++MYCK      A +VF  M ++D+ISW+++I+G+
Sbjct: 332 ALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGI 391

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH--AGFVEDGWNHFKSMKKFYGID 405
           AQNG   EA+ LF  +    +KP+  T+  VL A S    G       H  ++K    I+
Sbjct: 392 AQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIK----IN 447

Query: 406 PGREHY--SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
              + +  + +ID   R   ++EA  L     +  D V W A++  
Sbjct: 448 NVSDSFVSTALIDAYSRNRCMKEAEILFERHNF--DLVAWNAMMAG 491



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 129/265 (48%), Gaps = 31/265 (11%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY-- 150
            K  H  +L+    PE FL+N L++M+ K   L  A+ +FD+MP+R++VSW ++++AY  
Sbjct: 58  GKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQ 117

Query: 151 ---CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGII-------- 199
              C  +   +A  L   + ++ V  +  T S +L+ C        LH G +        
Sbjct: 118 SSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLC--------LHSGYVWASESFHG 169

Query: 200 ---KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
              K+G + D FV  AL++IY K G+++  + +F EMP RD+V+WN ++  + +    +E
Sbjct: 170 YACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEE 229

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD----HDLILNNAL 312
           A++L      +G   ++ TL  + R     +  + G QV       D     ++I  N  
Sbjct: 230 AIDLSSAFHSSGLNPNEITLRLLARISGDDS--DAG-QVKSFANGNDASSVSEIIFRNKG 286

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDV 337
           L  Y   G     +  F+ M++ DV
Sbjct: 287 LSEYLHSGQYSALLKCFADMVESDV 311



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 103/195 (52%), Gaps = 7/195 (3%)

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L++ +  H  I+      + F+ + LI +Y+K G L  A  VF++MP RDLV WNSI+  
Sbjct: 55  LMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAA 114

Query: 248 FAQNSD-----VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK- 301
           +AQ+S+     + +A  L++ +++      + TL+ +L+ C     +      H +  K 
Sbjct: 115 YAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKI 174

Query: 302 -YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
             D D  +  AL+++Y K G +++   +F  M  +DV+ W+ M+    + G+ +EA+ L 
Sbjct: 175 GLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLS 234

Query: 361 ESMKVSRIKPNYITI 375
            +   S + PN IT+
Sbjct: 235 SAFHSSGLNPNEITL 249



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 15/171 (8%)

Query: 289 LELGTQVHVHVLKYDHD---LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
           L LG   H  +L ++ +    ++NN L+ MY KCGSL  A  VF +M  +D++SW+++++
Sbjct: 55  LMLGKCTHARILTFEENPERFLINN-LISMYSKCGSLTYARRVFDKMPDRDLVSWNSILA 113

Query: 346 GLAQNGYS-----QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW--NHFKSM 398
             AQ+        Q+A  LF  ++   +  + +T+  +L  C H+G+V   W    F   
Sbjct: 114 AYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV---WASESFHGY 170

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
               G+D        ++++  + GK++E   L  EMPY  D V W  +L A
Sbjct: 171 ACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR-DVVLWNLMLKA 220


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/536 (40%), Positives = 334/536 (62%), Gaps = 5/536 (0%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           NIL+  +VK   LE A+ LFD+MP RNV +W  M++   ++ +N+++L     M REG++
Sbjct: 112 NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQ 171

Query: 173 PNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P+ +   ++ R C  L   +  RQ+H  +++ G + D+ V S+L  +Y + G LR+ E  
Sbjct: 172 PDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAA 231

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
              +P+ ++V  N+ I G  QN D + AL  +  M+ AG  A+  T  S + +C+ LA L
Sbjct: 232 LRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAAL 291

Query: 290 ELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
             G Q+H   +K   D ++    +L+ MY +CG L D+  V       D++  S MIS  
Sbjct: 292 AQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAY 351

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
             +G+ Q+A+ LF+ M  +  +PN +T + +L+ACSH+G  ++G N F+ M K YG+ P 
Sbjct: 352 GFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPS 411

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            +HY+C++DLLGR+G L EA  LI  MP +PD V W+ LL ACK  +  D+A   A++++
Sbjct: 412 VKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVI 471

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
            LDP D  +Y+LLSNI A S +W++V++VR+TMR + + KEPG SW+E+  QIH F   D
Sbjct: 472 ELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGD 531

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
            SH +  +I + L+ ++ ++   GYAPD + V  D+E E+KE S+ +HSEKLAI F  +S
Sbjct: 532 ESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLS 591

Query: 588 LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L +G  IR+ KNLR+C DCH   KL +K+  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 592 LPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 647



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 169/362 (46%), Gaps = 38/362 (10%)

Query: 161 ELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKL 220
           E L    REG+      +S + RAC +L +LRQLH      G  +D F  + L+  YA L
Sbjct: 31  EALHRRFREGLWSEPGLFSHIFRACQALPLLRQLHAFAATSGAAADRFTANHLLLAYADL 90

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV-------------------------- 254
           G+   A  +F  +P R+++ WN +IGG+ +N D+                          
Sbjct: 91  GDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLT 150

Query: 255 -----DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
                +E+L  +  M+R G   D+  L S+ R C GL  +  G QVH +V++   D D+ 
Sbjct: 151 NSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMC 210

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + ++L  MY +CG L D  +    +   +++S +T ISG  QNG ++ AL+ F  M+ + 
Sbjct: 211 VGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAG 270

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
           ++ N +T V  + +CS    +  G   H  ++K   G+D      + ++ +  R G L +
Sbjct: 271 VEANAVTFVSAVTSCSDLAALAQGQQIHALAIKT--GVDKVVPVMTSLVHMYSRCGCLGD 328

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           + ++  E     D V   A++ A   H +   A+   K+++    + P     L+ +YA 
Sbjct: 329 SERVCLEYS-GTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAE-PNEVTFLTLLYAC 386

Query: 487 SQ 488
           S 
Sbjct: 387 SH 388



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 139/293 (47%), Gaps = 15/293 (5%)

Query: 64  AMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123
           AM+  G++ D      L +CC     V   + VH +V+  G + +  + + L +M+++  
Sbjct: 164 AMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCG 223

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
            L + +     +P  N+VS  T IS        + ALE    M   GV  N  T+ + + 
Sbjct: 224 FLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVT 283

Query: 184 ACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           +C  L  L   +Q+H   IK G +  V V ++L+ +Y++ G L ++E V  E    DLV+
Sbjct: 284 SCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVL 343

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT-------GLALLELGT 293
            +++I  +  +    +A+ L+K+M  AG   ++ T  ++L AC+       G+   EL T
Sbjct: 344 CSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMT 403

Query: 294 QVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMS-VFSRMIQKDVISWSTMIS 345
           + +       H       ++D+  + G L +A   + S  +Q D + W T++S
Sbjct: 404 KTYGLQPSVKH----YTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLS 452



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 105/241 (43%), Gaps = 15/241 (6%)

Query: 29  VASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARH 88
           + SCNT     +             D   A++    M+  GV A++VT+   +  C    
Sbjct: 240 IVSCNTTISGRTQ----------NGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLA 289

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           A+ + + +H   +  G +    ++  L++M+ +   L +++ +  +    ++V  + MIS
Sbjct: 290 ALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMIS 349

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD-SLIILRQLHCGIIKV---GFE 204
           AY       KA+ L   M+  G  PN  T+  +L AC  S +    ++C  +     G +
Sbjct: 350 AYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQ 409

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKR 263
             V   + ++D+  + G L  AE +   MP + D V+W +++         D A  + +R
Sbjct: 410 PSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAER 469

Query: 264 M 264
           +
Sbjct: 470 V 470



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 13/155 (8%)

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNA 311
           V EAL+   R  R G  ++    + + RAC  L LL    Q+H          D    N 
Sbjct: 29  VKEALH---RRFREGLWSEPGLFSHIFRACQALPLLR---QLHAFAATSGAAADRFTANH 82

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           LL  Y   G    A  +F R+ +++V+SW+ +I G  +NG  + A KLF+ M    +   
Sbjct: 83  LLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPARNVATW 142

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
              + G+    +++G  E+    F +M++  G+ P
Sbjct: 143 NAMVAGL----TNSGLNEESLGFFFAMRR-EGMQP 172


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/609 (38%), Positives = 358/609 (58%), Gaps = 38/609 (6%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           +S T+  +IK      ++   + +H  V+   F  + F+ N L++ +     L+ A ++F
Sbjct: 130 NSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVF 189

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192
            ++ E+++VSW +MIS +      ++AL+L   M  E  RPN  T   VL AC   I L 
Sbjct: 190 SKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLE 249

Query: 193 --QLHCGII-KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
             +  C  I + G + ++ + +A++D+Y K G L +A  +F++M  +D+V W ++I G+A
Sbjct: 250 FGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYA 309

Query: 250 QNSDVDEALNLYKRMKRAGFAA--------------------------------DQSTLT 277
           +  D D A  ++  M R    A                                ++ TL 
Sbjct: 310 KVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLA 369

Query: 278 SVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQK 335
           S L AC  L  ++LG  +HV++ K    L   +  +L+DMY KCG LE A+ VF  + ++
Sbjct: 370 STLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERR 429

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
           DV  WS MI+GLA +G+ + A+ LF  M+ +++KPN +T   +L ACSH+G V++G   F
Sbjct: 430 DVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFF 489

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN 455
             M+  YG+ PG +HY+CM+D+LGRAG L+EAV+LI +MP  P A  W ALLGAC+++ N
Sbjct: 490 NQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGN 549

Query: 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE 515
            +LA  A  ++L  D  + G Y+LLSNIYA + KWD V+ +R+ M+  G+ KEPGCS IE
Sbjct: 550 VELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIE 609

Query: 516 VNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE-QKEDSIQY 574
           VN  IH F V D+SHP   +I   L  ++ ++   GY  D +++LQ +E E  KE ++  
Sbjct: 610 VNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNL 669

Query: 575 HSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQD 634
           HSEKLAI +GL+ +   + IRI KNLR+CGDCH+ AKL +K+ N+ I++RD  R+HHF  
Sbjct: 670 HSEKLAIAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSG 729

Query: 635 GNCSCGDYW 643
           GNCSC DYW
Sbjct: 730 GNCSCMDYW 738



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 136/420 (32%), Positives = 217/420 (51%), Gaps = 48/420 (11%)

Query: 82  KCCLARHAVEEAKLVHNHVLSGG--FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139
           KC   +H     K +H H+L  G  F+P +             S L+ A  +FDQ+P  N
Sbjct: 39  KCANKKHL----KQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPN 94

Query: 140 VVSWTTMISAYCDAKMNDKALELLIFMLREGVR-PNMFTYSAVLRAC---DSLIILRQLH 195
           + +W T+I A+  +    + L + I ML E  R PN +T+  V++A     SL+  + +H
Sbjct: 95  LYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIH 154

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
             ++K  F SD+F+ ++LI  Y+ LG+L +A  VF+++  +D+V WNS+I GF Q    +
Sbjct: 155 GMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPE 214

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV--HVHVLKYDHDLILNNALL 313
           EAL L+KRMK      ++ T+  VL AC     LE G     ++     D +LIL+NA+L
Sbjct: 215 EALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAML 274

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA------------------------- 348
           DMY KCGSLEDA  +F +M +KD++SW+TMI G A                         
Sbjct: 275 DMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNA 334

Query: 349 ------QNGYSQEALKLFESMKVSR-IKPNYITIVGVLFACSHAGFVE-DGWNHFKSMKK 400
                 QNG  +EAL +F  +++++  KPN +T+   L AC+  G ++  GW H    K+
Sbjct: 335 LISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQ 394

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
             GI       + +ID+  + G L++A+++ + +    D   W A++    +H +   AI
Sbjct: 395 --GIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERR-DVFVWSAMIAGLAMHGHGRAAI 451



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 149/314 (47%), Gaps = 40/314 (12%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+    R + VT   ++  C  R  +E  +   +++   G +    L N +L+
Sbjct: 216 ALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLD 275

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV------ 171
           M+VK   LE+A+ LFD+M E+++VSWTTMI  Y      D A  +   M RE +      
Sbjct: 276 MYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNAL 335

Query: 172 --------------------------RPNMFTYSAVLRACDSLIILR---QLHCGIIKVG 202
                                     +PN  T ++ L AC  L  +     +H  I K G
Sbjct: 336 ISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQG 395

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
            + +  + ++LID+Y+K G L  A  VF  +  RD+ VW+++I G A +     A++L+ 
Sbjct: 396 IKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFS 455

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNN----ALLDMYCK 318
           +M+      +  T T++L AC+   L++ G ++  + ++  + ++  +     ++D+  +
Sbjct: 456 KMQETKVKPNAVTFTNLLCACSHSGLVDEG-RLFFNQMRPVYGVVPGSKHYACMVDILGR 514

Query: 319 CGSLEDAMSVFSRM 332
            G LE+A+ +  +M
Sbjct: 515 AGCLEEAVELIEKM 528


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/536 (40%), Positives = 334/536 (62%), Gaps = 5/536 (0%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           NIL+  +VK   LE A+ LFD+MP RNV +W  M++   ++ +N+++L     M REG++
Sbjct: 4   NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQ 63

Query: 173 PNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P+ +   ++ R C  L   +  RQ+H  +++ G + D+ V S+L  +Y + G LR+ E  
Sbjct: 64  PDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAA 123

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
              +P+ ++V  N+ I G  QN D + AL  +  M+ AG  A+  T  S + +C+ LA L
Sbjct: 124 LRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAAL 183

Query: 290 ELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
             G Q+H   +K   D ++    +L+ MY +CG L D+  V       D++  S MIS  
Sbjct: 184 AQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAY 243

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
             +G+ Q+A+ LF+ M  +  +PN +T + +L+ACSH+G  ++G N F+ M K YG+ P 
Sbjct: 244 GFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPS 303

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            +HY+C++DLLGR+G L EA  LI  MP +PD V W+ LL ACK  +  D+A   A++++
Sbjct: 304 VKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVI 363

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
            LDP D  +Y+LLSNI A S +W++V++VR+TMR + + KEPG SW+E+  QIH F   D
Sbjct: 364 ELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGD 423

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
            SH +  +I + L+ ++ ++   GYAPD + V  D+E E+KE S+ +HSEKLAI F  +S
Sbjct: 424 ESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLS 483

Query: 588 LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L +G  IR+ KNLR+C DCH   KL +K+  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 484 LPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 539



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 139/293 (47%), Gaps = 15/293 (5%)

Query: 64  AMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123
           AM+  G++ D      L +CC     V   + VH +V+  G + +  + + L +M+++  
Sbjct: 56  AMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCG 115

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
            L + +     +P  N+VS  T IS        + ALE    M   GV  N  T+ + + 
Sbjct: 116 FLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVT 175

Query: 184 ACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           +C  L  L   +Q+H   IK G +  V V ++L+ +Y++ G L ++E V  E    DLV+
Sbjct: 176 SCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVL 235

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT-------GLALLELGT 293
            +++I  +  +    +A+ L+K+M  AG   ++ T  ++L AC+       G+   EL T
Sbjct: 236 CSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMT 295

Query: 294 QVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMS-VFSRMIQKDVISWSTMIS 345
           + +       H       ++D+  + G L +A   + S  +Q D + W T++S
Sbjct: 296 KTYGLQPSVKH----YTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLS 344



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 105/241 (43%), Gaps = 15/241 (6%)

Query: 29  VASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARH 88
           + SCNT     +             D   A++    M+  GV A++VT+   +  C    
Sbjct: 132 IVSCNTTISGRTQ----------NGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLA 181

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           A+ + + +H   +  G +    ++  L++M+ +   L +++ +  +    ++V  + MIS
Sbjct: 182 ALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMIS 241

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD-SLIILRQLHCGIIKV---GFE 204
           AY       KA+ L   M+  G  PN  T+  +L AC  S +    ++C  +     G +
Sbjct: 242 AYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQ 301

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKR 263
             V   + ++D+  + G L  AE +   MP + D V+W +++         D A  + +R
Sbjct: 302 PSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAER 361

Query: 264 M 264
           +
Sbjct: 362 V 362


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/627 (36%), Positives = 371/627 (59%), Gaps = 30/627 (4%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL-SGGF 105
           + F        A+     M   GV  D VT A ++  C     ++  K +H +VL +   
Sbjct: 270 SSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDL 329

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
              +F+ + L++M+     +E  + +FD +  R +  W  MIS Y    +++KAL L I 
Sbjct: 330 IENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIE 389

Query: 166 MLR-EGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
           M++  G+ PN  T ++V+ AC   ++      +H   +K+GF+ D +V++AL+D+Y+++G
Sbjct: 390 MIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMG 449

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR--------------- 266
           ++  +E +F+ M  RD V WN++I G+  +     AL L   M+R               
Sbjct: 450 KMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDE 509

Query: 267 --AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSL 322
               +  +  TL +VL  C  LA +  G ++H + ++     D+ + +AL+DMY KCG L
Sbjct: 510 KGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCL 569

Query: 323 EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM-----KVSRIKPNYITIVG 377
             +  VF+ M  K+VI+W+ +I     +G  +EAL+LF++M     +    KPN +T + 
Sbjct: 570 NLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFIT 629

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           V  ACSH+G + +G N F  MK  +G++P  +HY+C++DLLGRAG+L+EA +L++ MP E
Sbjct: 630 VFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAE 689

Query: 438 PDAV-TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEV 496
            D V  W +LLGAC++H+N +L   AAK +L+L+P     Y+LLSNIY+++  W++  EV
Sbjct: 690 FDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEV 749

Query: 497 RKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDT 556
           RK MR  G+ KEPGCSWIE   ++H F   D SHPQ ++++  L+ L +K+   GY PDT
Sbjct: 750 RKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDT 809

Query: 557 NYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKM 616
           + VL +++ ++KE+ +  HSEKLAI FG+++   G TIR+ KNLR+C DCH   K  +K+
Sbjct: 810 SCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKI 869

Query: 617 ENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             + I++RD  R+HHF++G CSCGDYW
Sbjct: 870 MEREIIVRDVRRFHHFKEGTCSCGDYW 896



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 130/435 (29%), Positives = 226/435 (51%), Gaps = 20/435 (4%)

Query: 26  TPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCL 85
           TPP  +  + +R+++S +D         D   A+     M   G R D+  +  ++K   
Sbjct: 46  TPPKPT--SPSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVS 103

Query: 86  ARHAVEEAKLVHNHVLSGGFEPETFLV-NILLNMHVKFSLLEEAQVLFDQMPERNVVSWT 144
               ++  + +H   +  G+   +  V N L+NM+ K   + +   +FD++ +R+ VSW 
Sbjct: 104 GLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWN 163

Query: 145 TMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL------RQLHCGI 198
           + I+A C  +  ++ALE    M  E +  + FT  +V  AC +L ++      +QLH   
Sbjct: 164 SFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYS 223

Query: 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEAL 258
           ++VG +   F  +AL+ +YAKLG + +++ +F     RD+V WN++I  F+Q+    EAL
Sbjct: 224 LRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEAL 282

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLD 314
             ++ M   G   D  T+ SVL AC+ L  L++G ++H +VL+ ++DLI N    +AL+D
Sbjct: 283 AFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLR-NNDLIENSFVGSALVD 341

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF-ESMKVSRIKPNYI 373
           MYC C  +E    VF  ++ + +  W+ MISG A+NG  ++AL LF E +KV+ + PN  
Sbjct: 342 MYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTT 401

Query: 374 TIVGVLFACSHA-GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           T+  V+ AC H   F      H  ++K   G    R   + ++D+  R GK+  +  +  
Sbjct: 402 TMASVMPACVHCEAFSNKESIHGYAVK--LGFKEDRYVQNALMDMYSRMGKMDISETIFD 459

Query: 433 EMPYEPDAVTWRALL 447
            M    D V+W  ++
Sbjct: 460 SMEVR-DRVSWNTMI 473


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/603 (39%), Positives = 368/603 (61%), Gaps = 33/603 (5%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVE--EAKLVHNHVLSGGFEPETFLV 112
           LP   K ++ +Q +GV   S+T    I     RH V   +A+L  + +         +LV
Sbjct: 12  LPMVEKCINLLQTYGV--SSITKLRQIHAFSIRHGVSISDAELGKHLIF--------YLV 61

Query: 113 NI-----LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           ++     +   H  FS +E+           NV  W T+I  Y +   +  A  L   M 
Sbjct: 62  SLPSPPPMSYAHKVFSKIEKPI---------NVFIWNTLIRGYAEIGNSISAFSLYREMR 112

Query: 168 REG-VRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
             G V P+  TY  +++A  ++  +R    +H  +I+ GF S ++V+++L+ +YA  G++
Sbjct: 113 VSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDV 172

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
            +A  VF++MP +DLV WNS+I GFA+N   +EAL LY  M   G   D  T+ S+L AC
Sbjct: 173 ASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSAC 232

Query: 284 TGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
             +  L LG +VHV+++K     +L  +N LLD+Y +CG +E+A ++F  M+ K+ +SW+
Sbjct: 233 AKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWT 292

Query: 342 TMISGLAQNGYSQEALKLFESMKVSR-IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           ++I GLA NG+ +EA++LF+ M+ +  + P  IT VG+L+ACSH G V++G+ +F+ M++
Sbjct: 293 SLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE 352

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            Y I+P  EH+ CM+DLL RAG++++A + I  MP +P+ V WR LLGAC VH ++DLA 
Sbjct: 353 EYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAE 412

Query: 461 CAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQI 520
            A  +IL L+P   G Y+LLSN+YA+ Q+W +V ++RK M   G+ K PG S +EV  ++
Sbjct: 413 FARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRV 472

Query: 521 HAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLA 580
           H F + D SHPQ D I   LK +  +L   GY P  + V  D+E E+KE+++ YHSEK+A
Sbjct: 473 HEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIA 532

Query: 581 IVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
           I F L+S  +   I + KNLR+C DCH   KL +K+ N+ IV+RD  R+HHF++G+CSC 
Sbjct: 533 IAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQ 592

Query: 641 DYW 643
           DYW
Sbjct: 593 DYW 595


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/597 (39%), Positives = 367/597 (61%), Gaps = 14/597 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+  +  M+  G++ + VT   ++  C     +  A L+H +V+  G E + F+ N L+
Sbjct: 299 QALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALI 358

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           NM+ KF  LE+A+  F QM   +VVSW ++I+AY        A    + M   G +P++ 
Sbjct: 359 NMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLL 418

Query: 177 TYSAVL------RACDSLIILRQLHCGIIKVGF-ESDVFVRSALIDIYAKLGELRNAECV 229
           T  ++       R C +    R +H  I++ G+   DV + +A++D+YAKLG L +A  V
Sbjct: 419 TLVSLASIVAQSRDCKNS---RSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKV 475

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG-FAADQSTLTSVLRACTGLAL 288
           F  +  +D++ WN++I G+AQN    EA+ +YK M+       +Q T  S+L A   +  
Sbjct: 476 FEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGA 535

Query: 289 LELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           L+ G ++H  V+K +   D+ +   L+D+Y KCG L DAMS+F ++ Q+  ++W+ +IS 
Sbjct: 536 LQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISC 595

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
              +G++++ LKLF  M    +KP+++T V +L ACSH+GFVE+G   F+ M++ YGI P
Sbjct: 596 HGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKP 654

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
             +HY CM+DLLGRAG L+ A   I +MP +PDA  W ALLGAC++H N +L   A+ ++
Sbjct: 655 SLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRL 714

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
             +D ++ G Y+LLSNIYAN  KW+ V +VR   R RG+ K PG S IEVN+++  F   
Sbjct: 715 FEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTG 774

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           + SHP+  +I + L+ L  K+  +GY PD ++VLQD+E ++KE  +  HSE+LAI FG++
Sbjct: 775 NQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGII 834

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           S      IRI KNLR+CGDCH   K  +++  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 835 STPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 143/455 (31%), Positives = 240/455 (52%), Gaps = 20/455 (4%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           +R D  T+  ++K C     + + + +H      GF+   F+   L++M+ +F     A+
Sbjct: 214 IRPDFYTFPPVLKAC---GTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIAR 270

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            LFD MP R++ SW  MIS         +AL++L  M  EG++ N  T  ++L  C  L 
Sbjct: 271 SLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLG 330

Query: 190 ILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            +     +H  +IK G E D+FV +ALI++YAK G L +A   F +M   D+V WNSII 
Sbjct: 331 DISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIA 390

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--- 303
            + QN D   A   + +M+  GF  D  TL S+          +    VH  +++     
Sbjct: 391 AYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLM 450

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D+++ NA++DMY K G L+ A  VF  ++ KDVISW+T+I+G AQNG + EA+++++ M
Sbjct: 451 EDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMM 510

Query: 364 -KVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            +   I PN  T V +L A +H G ++ G   H + +K    +D      +C+ID+ G+ 
Sbjct: 511 EECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVA--TCLIDVYGKC 568

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN--LDPQDPGTYIL 479
           G+L +A+ L +++P E  +VTW A++    +H + +  +    ++L+  + P D  T++ 
Sbjct: 569 GRLVDAMSLFYQVPQE-SSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKP-DHVTFVS 626

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGIT---KEPGC 511
           L +  ++S   +E     + M+  GI    K  GC
Sbjct: 627 LLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGC 661



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 217/424 (51%), Gaps = 26/424 (6%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
           AK +H  ++  G     F+   L+N++     +  ++  FDQ+P+++V +W +MISAY  
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVH 194

Query: 153 AKMNDKALELLI-FMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRS 211
                +A+      +L   +RP+ +T+  VL+AC +L+  R++HC   K+GF+ +VFV +
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQWNVFVAA 254

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
           +LI +Y++ G    A  +F++MP RD+  WN++I G  QN +  +AL++   M+  G   
Sbjct: 255 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKM 314

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVF 329
           +  T+ S+L  C  L  +     +H++V+K+  + DL ++NAL++MY K G+LEDA   F
Sbjct: 315 NFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAF 374

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
            +M   DV+SW+++I+   QN     A   F  M+++  +P+ +T+V +    + +    
Sbjct: 375 QQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQS---- 430

Query: 390 DGWNHFKSMKKFYGIDPGREHY-------SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
                 K+ +  +G    R          + ++D+  + G L  A K + E+    D ++
Sbjct: 431 ---RDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHK-VFEIILVKDVIS 486

Query: 443 WRALLGACKVHRNTDLAICAAKKILNLDPQDP--GTYILLSNIYANSQKWDEVAEVRKTM 500
           W  L+     +     AI   K +       P  GT++ +   YA+      V  +++ M
Sbjct: 487 WNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAH------VGALQQGM 540

Query: 501 RARG 504
           R  G
Sbjct: 541 RIHG 544


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/593 (36%), Positives = 361/593 (60%), Gaps = 6/593 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+     MQ  G++    T+A ++   +    +   + +H+ V+   F    F+ N LL
Sbjct: 233 KAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALL 292

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           + + K   + +A+ LFD+MPE++ VS+  +IS Y     +  A +L   +         F
Sbjct: 293 DFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQF 352

Query: 177 TYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
            ++ +L    + +   + RQ+H   I    +S++ V ++L+D+YAK G+   AE +F  +
Sbjct: 353 PFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNL 412

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             R  V W ++I  + Q    +E L L+ +M++A   ADQ+T  S+LRA   +A L LG 
Sbjct: 413 THRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGK 472

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+H  ++K  +  ++   +ALLD+Y KCGS++DA+  F  M  ++++SW+ MIS  AQNG
Sbjct: 473 QLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNG 532

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
            ++  LK F+ M +S ++P+ ++ +GVL ACSH+G VE+G  HF SM + Y +DP REHY
Sbjct: 533 EAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHY 592

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           + ++D+L R+G+  EA KL+ EMP +PD + W ++L AC++H+N +LA  AA ++ N++ 
Sbjct: 593 ASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEE 652

Query: 472 -QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSH 530
            +D   Y+ +SNIYA + +W+ V++V K MR RG+ K P  SW+E+  + H F+  D  H
Sbjct: 653 LRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCH 712

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           PQI++I K +  L + +  +GY PDT+  L + + + K +S++YHSE+LAI F L+S  +
Sbjct: 713 PQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPE 772

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           G  I + KNLR C DCH   K+ +K+  + I +RD  R+HHF+DG CSCGD+W
Sbjct: 773 GSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 825



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 206/393 (52%), Gaps = 13/393 (3%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  G   D VT+  L+  C       +   V   ++  G++    + N L++ + K + 
Sbjct: 140 MQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNR 199

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L+ A  LF +MPE + VS+  MI+ Y    +++KA+ L + M   G++P  FT++AVL A
Sbjct: 200 LDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCA 259

Query: 185 ---CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
               D +++ +Q+H  +IK  F  +VFV +AL+D Y+K   + +A  +F+EMP +D V +
Sbjct: 260 NIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSY 319

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH--V 299
           N II G+A +     A +L++ ++   F   Q    ++L   +     E+G Q+H    V
Sbjct: 320 NVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIV 379

Query: 300 LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
              D ++++ N+L+DMY KCG  E+A  +F+ +  +  + W+ MIS   Q G+ +E L+L
Sbjct: 380 TTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQL 439

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY---GIDPGREHYSCMID 416
           F  M+ + +  +  T   +L A +    +  G    K +  F    G        S ++D
Sbjct: 440 FNKMRQASVIADQATFASLLRASASIASLSLG----KQLHSFIIKSGFMSNVFSGSALLD 495

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           +  + G +++AV+   EMP + + V+W A++ A
Sbjct: 496 VYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISA 527



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 178/346 (51%), Gaps = 7/346 (2%)

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
           T   N++++ +VK   L EA+ LFD M ER  V+WT +I  Y       +A EL + M R
Sbjct: 83  TVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQR 142

Query: 169 EGVRPNMFTYSAVLRACDSLII---LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
            G  P+  T+  +L  C+   +   + Q+   IIK+G++S + V + L+D Y K   L  
Sbjct: 143 CGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDL 202

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F EMP  D V +N++I G++++   ++A+NL+  M+ +G    + T  +VL A  G
Sbjct: 203 ACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIG 262

Query: 286 LALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L  + LG Q+H  V+K +   ++ ++NALLD Y K  S+ DA  +F  M ++D +S++ +
Sbjct: 263 LDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVI 322

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           ISG A +G  + A  LF  ++ +           +L   S+    E G     +      
Sbjct: 323 ISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMG-RQIHAQTIVTT 381

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            D      + ++D+  + GK +EA  +   + +   AV W A++ A
Sbjct: 382 ADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHR-SAVPWTAMISA 426



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 153/340 (45%), Gaps = 74/340 (21%)

Query: 162 LLIFMLREGVRPNMFTYSAVLRACD-SLIILRQLHCGIIKVGFESDV---------FVRS 211
           LL++++++ V  + F  S+ L++    L ++  +   I+K GF+ D          F+++
Sbjct: 8   LLLWVMKKNV--STFLKSSSLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKN 65

Query: 212 A----------------------LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
                                  +I  Y K G L  A  +F+ M  R  V W  +IGG++
Sbjct: 66  GELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYS 125

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           Q +   EA  L+ +M+R G   D  T  ++L  C G  +    TQV   ++K  YD  LI
Sbjct: 126 QLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLI 185

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + N L+D YCK   L+ A  +F  M + D +S++ MI+G +++G  ++A+ LF  M+ S 
Sbjct: 186 VGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSG 245

Query: 368 IKPNYITIVGVLFACSHAG------------------FVEDGWNHFKSMKKFYGIDPGRE 409
           +KP   T   VL  C++ G                  FV   WN F S            
Sbjct: 246 LKPTEFTFAAVL--CANIGLDDIVLGQQIHSFVIKTNFV---WNVFVS------------ 288

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
             + ++D   +   + +A KL  EMP E D V++  ++  
Sbjct: 289 --NALLDFYSKHDSVIDARKLFDEMP-EQDGVSYNVIISG 325


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/541 (40%), Positives = 339/541 (62%), Gaps = 11/541 (2%)

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           + N L+   ++  ++E+A+ LF  M +R+ ++WTTM++      +  +AL++   M  EG
Sbjct: 214 MYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEG 273

Query: 171 VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
           V  + +T+ ++L AC +L  L   +Q+H  I +  +E +VFV SAL+D+Y+K   +R AE
Sbjct: 274 VGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAE 333

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            VF  M  R+++ W ++I G+ QN+  +EA+  +  M+  G   D  TL SV+ +C  LA
Sbjct: 334 AVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLA 393

Query: 288 LLELGTQVHV-----HVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            LE G Q H       +++Y   + ++NAL+ +Y KCGS+EDA  +F  M   D +SW+ 
Sbjct: 394 SLEEGAQFHCLALVSGLMRY---ITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTA 450

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           +++G AQ G ++E + LFE M  + +KP+ +T +GVL ACS AG VE G ++F SM+K +
Sbjct: 451 LVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDH 510

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           GI P  +HY+CMIDL  R+G+ +EA + I +MP+ PDA  W  LL +C++  N ++   A
Sbjct: 511 GIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWA 570

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A+ +L  DPQ+P +Y+LL +++A   +W EVA +R+ MR R + KEPGCSWI+   ++H 
Sbjct: 571 AENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHI 630

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F+  D SHP   +I + L+ L  K+   GY PD + VL D+    K   I +HSEKLAI 
Sbjct: 631 FSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIA 690

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           FGL+ + Q   IRI KNLR+C DCH   K  +K+  + I++RD +R+H F DG CSCGD+
Sbjct: 691 FGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDF 750

Query: 643 W 643
           W
Sbjct: 751 W 751



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 120/379 (31%), Positives = 202/379 (53%), Gaps = 39/379 (10%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           +P  F  N LL+      L+ + + LF  MPER+ VS+  +I+ +       ++++L   
Sbjct: 76  DPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRA 135

Query: 166 MLR-EGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
           +LR E VRP   T SA++    +L    +   +HC ++++GF +  FV S L+D+YAK+G
Sbjct: 136 LLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMG 195

Query: 222 ELRNAECVFNEMPT-------------------------------RDLVVWNSIIGGFAQ 250
            +R+A  VF EM                                 RD + W +++ G  Q
Sbjct: 196 LIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQ 255

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
           N    EAL++++RM+  G   DQ T  S+L AC  LA LE G Q+H ++ +  Y+ ++ +
Sbjct: 256 NGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFV 315

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            +AL+DMY KC S+  A +VF RM  +++ISW+ MI G  QN  S+EA++ F  M++  I
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
           KP+  T+  V+ +C++   +E+G   F  +    G+       + ++ L G+ G +++A 
Sbjct: 376 KPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAH 434

Query: 429 KLIHEMPYEPDAVTWRALL 447
           +L  EM +  D V+W AL+
Sbjct: 435 RLFDEMSFH-DQVSWTALV 452



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 153/302 (50%), Gaps = 9/302 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M+  GV  D  T+  ++  C A  A+EE K +H ++    +E   F+ + L++
Sbjct: 262 ALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVD 321

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +  A+ +F +M  RN++SWT MI  Y     +++A+     M  +G++P+ FT
Sbjct: 322 MYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFT 381

Query: 178 YSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             +V+ +C +L  L    Q HC  +  G    + V +AL+ +Y K G + +A  +F+EM 
Sbjct: 382 LGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMS 441

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             D V W +++ G+AQ     E ++L+++M   G   D  T   VL AC+   L+E G  
Sbjct: 442 FHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCD 501

Query: 295 VHVHVLKYDHDLILNN----ALLDMYCKCGSLEDAMSVFSRMIQK-DVISWSTMISGLAQ 349
            +   ++ DH ++  +     ++D+Y + G  ++A     +M    D   W+T++S    
Sbjct: 502 -YFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRL 560

Query: 350 NG 351
            G
Sbjct: 561 RG 562


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/636 (37%), Positives = 370/636 (58%), Gaps = 38/636 (5%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105
           F       D   A+K    M   G+  +S T+  L+K C    A +E + +H  VL  GF
Sbjct: 75  FRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGF 134

Query: 106 EPETFLVNILLNMHVKFSLLEEAQV-------------------------------LFDQ 134
           + + ++   L++M+V+   LE+AQ                                +FD+
Sbjct: 135 DLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDE 194

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIIL 191
           +P ++VVSW   IS Y +     +ALEL   M++  VRP+  T   VL AC    S+ + 
Sbjct: 195 IPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELG 254

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           RQ+H  I   GF  ++ + +ALID+Y+K GEL  A  +F  +  +D++ WN++IGG+   
Sbjct: 255 RQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHM 314

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI---- 307
           +   EAL L++ M R+G   +  T+ S+L AC  L  +++G  +HV++ K    +     
Sbjct: 315 NLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASS 374

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           L  +L+DMY KCG +E A  VF  M+ + + SW+ MI G A +G +  A  +F  M+ + 
Sbjct: 375 LRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNG 434

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           I+P+ IT VG+L ACSH+G ++ G + F+SM + Y + P  EHY CMIDL G +G  +EA
Sbjct: 435 IEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEA 494

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487
            K+I+ M  EPD V W +LL ACK+H N +L    A+ ++ ++P++PG+Y+LLSNIYA +
Sbjct: 495 EKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATA 554

Query: 488 QKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL 547
           ++W+EVA+ R  +  +G+ K PGCS IE++  +H F + D  HP+  +I   L+ +   L
Sbjct: 555 ERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLL 614

Query: 548 VGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCH 607
              G+ PDT+ VLQ++E E KE ++++HSEKLAI FGL+S   G  + I KNLR+C +CH
Sbjct: 615 EEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCH 674

Query: 608 TFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
              KL +K+  + I+ RD  R+HHF+DG CSC DYW
Sbjct: 675 EATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 125/435 (28%), Positives = 217/435 (49%), Gaps = 43/435 (9%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHV---KFSLLEEAQVLFDQMPERNVVSWTT 145
            ++  +++H  ++  G     + ++ LL   V    F  L  A  +FD + E  ++ W T
Sbjct: 14  TLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNT 73

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVG 202
           M   +  +     AL+L + M+  G+ PN +T+  +L++C      +   QLH  ++K G
Sbjct: 74  MFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFG 133

Query: 203 FESDVFVRSALIDIYAKLGELRNAECV-------------------------------FN 231
           F+ D+++ ++LI +Y + G L +A+ V                               F+
Sbjct: 134 FDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFD 193

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           E+P +D+V WN+ I G+A+  +  EAL L+K+M +     D+ST+ +VL AC     +EL
Sbjct: 194 EIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIEL 253

Query: 292 GTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G QVH  ++   +  +L + NAL+D+Y KCG LE A  +F  +  KDVISW+T+I G   
Sbjct: 254 GRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTH 313

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGR 408
               +EAL LF+ M  S  KPN +T++ +L AC+H G ++ G W H    K+  G+    
Sbjct: 314 MNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNAS 373

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA--ICAAKKI 466
              + +ID+  + G ++ A ++   M       +W A++    +H   + A  I +  + 
Sbjct: 374 SLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRK 432

Query: 467 LNLDPQDPGTYILLS 481
             ++P D     LLS
Sbjct: 433 NGIEPDDITFVGLLS 447



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 144/306 (47%), Gaps = 38/306 (12%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALID---IYAKLGELRNAECVFNEMPTR 236
           ++L  C +L  LR +H  +IK G  +  +  S L++   +      L  A  VF+ +   
Sbjct: 7   SLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEP 66

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
            L++WN++  G A +SD   AL LY  M   G   +  T   +L++C      + G Q+H
Sbjct: 67  XLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLH 126

Query: 297 VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSV-------------------------- 328
             VLK  +D DL ++ +L+ MY + G LEDA  V                          
Sbjct: 127 GQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIE 186

Query: 329 -----FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
                F  +  KDV+SW+  ISG A+ G  +EAL+LF+ M  + ++P+  T+V VL AC+
Sbjct: 187 SAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACA 246

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
            +G +E G     S    +G     +  + +IDL  + G+L+ A  L   +    D ++W
Sbjct: 247 QSGSIELG-RQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLS-NKDVISW 304

Query: 444 RALLGA 449
             L+G 
Sbjct: 305 NTLIGG 310



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 18/211 (8%)

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           A+SVF  + +  ++ W+TM  G A +     ALKL+  M    + PN  T   +L +C+ 
Sbjct: 56  AISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAK 115

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           +   ++G      + KF G D     ++ +I +  + G+L++A K+  +  +  D V++ 
Sbjct: 116 SXAFKEGQQLHGQVLKF-GFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHR-DVVSYT 173

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDP-QDPGTYILLSNIYANSQKWDEVAEVRKTM--- 500
           AL+        +   I +A K+ +  P +D  ++    + YA +  + E  E+ K M   
Sbjct: 174 ALITGYA----SRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKT 229

Query: 501 -----RARGITKEPGCSW---IEVNKQIHAF 523
                 +  +T    C+    IE+ +Q+H++
Sbjct: 230 NVRPDESTMVTVLSACAQSGSIELGRQVHSW 260


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/581 (41%), Positives = 343/581 (59%), Gaps = 34/581 (5%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  +L  G      L   L   +     L+ +  +F+   E NV S++ +I ++  +++
Sbjct: 66  IHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRL 125

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALID 215
            D+A      ML  GV PN FT+S+VL++C SL   + LHC  IK+G  SD++VR+ L+D
Sbjct: 126 FDRAFGYYSQMLSCGVEPNAFTFSSVLKSC-SLESGKVLHCQAIKLGLGSDLYVRTGLVD 184

Query: 216 IYA-------------------------------KLGELRNAECVFNEMPTRDLVVWNSI 244
           +YA                               K+GEL  A  +F  M  RD+V WN +
Sbjct: 185 VYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVM 244

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           IGG+AQ+   +E+L L++RM  A    ++ T+ +VL AC  L  LE G  +H ++     
Sbjct: 245 IGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGI 304

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
             ++ +  AL+DMY KCGSLEDA  VF R+  KDV++W++MI G A +G+SQ AL+LFE 
Sbjct: 305 QINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEE 364

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           M  +  KP  IT +G+L AC H G VE+G + F+ M+  YGI+P  EHY CM++LLGRAG
Sbjct: 365 MTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAG 424

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
            L+EA  L+  M    D V W  LLG C++H N  L    AK +++    + GTY+LLSN
Sbjct: 425 HLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLSN 484

Query: 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKH 542
           +YA +  W+ VA++R  M+  GI KE GCS IEV+ ++H F   +  HP+  +I   L  
Sbjct: 485 MYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSKEIYVMLNE 544

Query: 543 LIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
           +   L   GY P T+ VL DL  EQKE S++ HSEKLAI FGL+S   G T++I KNLR+
Sbjct: 545 INSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKPGTTVKIVKNLRV 604

Query: 603 CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           C DCHT  K+ +++  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 605 CSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 152/331 (45%), Gaps = 42/331 (12%)

Query: 53  RDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
           R   RA      M   GV  ++ T++ ++K C    ++E  K++H   +  G   + ++ 
Sbjct: 124 RLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSC----SLESGKVLHCQAIKLGLGSDLYVR 179

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVS------------------------------ 142
             L++++ +   +  A+ LFD+MPER++VS                              
Sbjct: 180 TGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVV 239

Query: 143 -WTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGI 198
            W  MI  Y  + + +++L+L   ML     PN  T  AVL AC  L  L   R +H  I
Sbjct: 240 CWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYI 299

Query: 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEAL 258
              G + +V V +ALID+Y+K G L +A  VF+ +  +D+V WNS+I G+A +     AL
Sbjct: 300 ENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHAL 359

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ-VHVHVLKYDHDLILNN--ALLDM 315
            L++ M   G      T   +L AC    L+E G     +   KY  +  + +   ++++
Sbjct: 360 QLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNL 419

Query: 316 YCKCGSLEDAMSVFSRM-IQKDVISWSTMIS 345
             + G LE+A  +   M I  D + W T++ 
Sbjct: 420 LGRAGHLEEAYGLVKNMTIAADPVLWGTLLG 450



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 144/310 (46%), Gaps = 41/310 (13%)

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           +++++    S+  L Q+H  +++ G   +  +   L   YA LG L  +  VFN     +
Sbjct: 50  FASLIDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPN 109

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           +  +++II    Q+   D A   Y +M   G   +  T +SVL++C+    LE G  +H 
Sbjct: 110 VFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHC 165

Query: 298 HVLK--YDHDLILNNALLDMYC-------------------------------KCGSLED 324
             +K     DL +   L+D+Y                                K G L+ 
Sbjct: 166 QAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDK 225

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           A S+F  M ++DV+ W+ MI G AQ+G   E+LKLF  M V++  PN +T++ VL AC  
Sbjct: 226 ARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQ 285

Query: 385 AGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
            G +E G W H  S  +  GI       + +ID+  + G L++A +L+ +   + D V W
Sbjct: 286 LGALESGRWIH--SYIENKGIQINVHVGTALIDMYSKCGSLEDA-RLVFDRIRDKDVVAW 342

Query: 444 RALLGACKVH 453
            +++    +H
Sbjct: 343 NSMIVGYAMH 352



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 95/209 (45%), Gaps = 22/209 (10%)

Query: 52  QRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Q  +P  ++K    M       + VT   ++  C    A+E  + +H+++ + G +    
Sbjct: 250 QSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVH 309

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           +   L++M+ K   LE+A+++FD++ +++VV+W +MI  Y     +  AL+L   M   G
Sbjct: 310 VGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETG 369

Query: 171 VRPNMFTYSAVLRACDSLIILRQLHCGII------------KVGFESDVFVRSALIDIYA 218
            +P   T+  +L AC         H G++            K G E  +     ++++  
Sbjct: 370 HKPTDITFIGILSACG--------HGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLG 421

Query: 219 KLGELRNAECVFNEMP-TRDLVVWNSIIG 246
           + G L  A  +   M    D V+W +++G
Sbjct: 422 RAGHLEEAYGLVKNMTIAADPVLWGTLLG 450


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/574 (39%), Positives = 354/574 (61%), Gaps = 8/574 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y   I  C+ R A+ E + VH  +++ G+ P  +L   L+ M+ +   LE+A  + D MP
Sbjct: 38  YDAAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMP 97

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC-DSLII----L 191
           ERNVVSWT MIS Y   +   +A +L I MLR G  PN FT ++VL +C  S  I    +
Sbjct: 98  ERNVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQI 157

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           +Q+H   IK  FE  +FV S+L+D+YA+   ++ A  VF+ +P RD+V + +I+ G+ + 
Sbjct: 158 KQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGYTRL 217

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI--LN 309
              +EALNL++++   G   +Q T + +L A +GL+ ++ G QVH  +L+ +      L 
Sbjct: 218 GLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMALQ 277

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
           N+L+DMY KCG L  +  VF  M ++ V+SW+ M+ G  ++G + E ++LF  M   ++K
Sbjct: 278 NSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFM-CDKVK 336

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           P+ +T++ VL   SH G V++G + F  + K        +HY C+IDLLGR+G+L++A+ 
Sbjct: 337 PDSVTLLAVLLGYSHGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKALL 396

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489
           LI +MP++P    W +LLGAC+VH N  +    A+K+ +++P++ G Y++LSNIYA ++ 
Sbjct: 397 LIQKMPFQPTRAIWGSLLGACRVHANVHVGEFVAQKLFDIEPENAGNYVILSNIYAAARM 456

Query: 490 WDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549
           W +V  +RK M  + + KEPG SW+ ++K IH F+ ++  HP+ + IN  +  +   +  
Sbjct: 457 WKDVFRLRKLMLKKTVIKEPGRSWMILDKVIHTFHSSERFHPRKEDINVKINEIYAAIKA 516

Query: 550 VGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
            G+ PD + VL D++ EQKE  +  HSEKLAI FGLMS     TI++ KNLRIC DCH F
Sbjct: 517 AGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRICVDCHNF 576

Query: 610 AKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           AK  +K+  + I +RD  R+H   +G C+CGDYW
Sbjct: 577 AKFVSKVYGREISLRDKNRFHLITEGACTCGDYW 610



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 106/228 (46%), Gaps = 25/228 (10%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           +++L  +TR     +   A+     +   G++ + VT++ L+       +++  K VH  
Sbjct: 208 TTILSGYTRLGLDEE---ALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGL 264

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           +L         L N L++M+ K   L  ++ +FD MPER+VVSW  M+  Y    M  + 
Sbjct: 265 ILRRELPFFMALQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEV 324

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVG---FESDVFVRSAL--- 213
           ++L  FM  + V+P+  T  AVL        L   H G++  G   F+  V  +S L   
Sbjct: 325 VQLFRFMC-DKVKPDSVTLLAVL--------LGYSHGGLVDEGLDMFDHIVKEQSTLLNT 375

Query: 214 ------IDIYAKLGELRNAECVFNEMPTRDL-VVWNSIIGGFAQNSDV 254
                 ID+  + G+L  A  +  +MP +    +W S++G    +++V
Sbjct: 376 QHYGCVIDLLGRSGQLEKALLLIQKMPFQPTRAIWGSLLGACRVHANV 423


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/638 (36%), Positives = 373/638 (58%), Gaps = 54/638 (8%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
            C Q  L  A++ ++ ++    +  +  Y  L+K CL + A++E K VH H+ + G    
Sbjct: 98  LCGQSRLREAVQLLYRIE----KPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSG-SIG 152

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            ++ N LL+M+ K   L +A+ +FD+M  R++ SW  MIS Y      +KA  L   M  
Sbjct: 153 LYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKM-- 210

Query: 169 EGVRPNM--FTYSAVLRAC---------------------------------------DS 187
               PN   F+++A++  C                                        S
Sbjct: 211 ----PNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPS 266

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L + +++H  I+++G +SD  V  +L+D+Y K G +  A  +F++M  RD+V W ++I  
Sbjct: 267 LHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHT 326

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI 307
           + +N   +E   L++ +  +    +  T   VL AC  LA  +LG Q+H ++++   D  
Sbjct: 327 YLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSF 386

Query: 308 LN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
            +  +AL+ MY KCG +E+A SVF  + Q D+ SW++++ G AQ+G   +AL  FE +  
Sbjct: 387 SSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLK 446

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
           S  KP+ I  +GVL AC+HAG V+ G  +F S+K+ +G+    +HY+C+IDLL RAG+  
Sbjct: 447 SGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFT 506

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           EA  +I+EMP +PD   W ALLG C++H N +LA  AAK +  ++P++P TY+ L+NIYA
Sbjct: 507 EAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYA 566

Query: 486 NSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQ 545
           ++    E A +R+TM +RGI K+PG SWIE+ +++H F+V D+SHP+  +I ++L  L +
Sbjct: 567 SAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSK 626

Query: 546 KLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGD 605
           ++  VGY PDTN+VL D+E EQKE+++ YHSEKLA+ FG++S   G  I++ KNLR C D
Sbjct: 627 RMKEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSGTPIKVFKNLRTCVD 686

Query: 606 CHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           CH   K  + +  + I++RD  R+H F+ G+CSC DYW
Sbjct: 687 CHNAIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 178/360 (49%), Gaps = 49/360 (13%)

Query: 147 ISAYCDAKMNDKALELLIFM--LREGV-------RPNMFTYSAVLRAC---DSLIILRQL 194
           I+  CD+K+  +A+++L     LRE V       +P    Y  +L+ C    +L   +Q+
Sbjct: 82  INRLCDSKLFKEAIDILCGQSRLREAVQLLYRIEKPYASIYLTLLKFCLKQRALKEGKQV 141

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN------------ 242
           H  I K      +++ + L+D+YAK G L +AE VF+EM  RDL  WN            
Sbjct: 142 HAHI-KTSGSIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNF 200

Query: 243 -------------------SIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLRA 282
                              +II G  Q++  +EAL LY+ M++  ++ +++ T++S L A
Sbjct: 201 EKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAA 260

Query: 283 CTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
              +  L +G ++H H+++   D D ++  +LLDMY KCGS+E+A  +F +M ++DV+SW
Sbjct: 261 SAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSW 320

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           +TMI    +NG  +E   LF  +  S I PN  T  GVL AC+     ED      +   
Sbjct: 321 TTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLA-AEDLGKQIHAYMV 379

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
             G D      S ++ +  + G ++ A  +   +P +PD  +W +LL     H   D A+
Sbjct: 380 RVGFDSFSSAASALVHMYSKCGDIENAKSVFEILP-QPDLFSWTSLLVGYAQHGQHDKAL 438


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/586 (38%), Positives = 360/586 (61%), Gaps = 36/586 (6%)

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
           K++H H++      + F  + L+++ +  +LL+ A  +F Q+   N+  + + I  +  +
Sbjct: 32  KIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGS 91

Query: 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVR 210
           K  DK+    +   R G+ P+  TY  +++AC    SL +  Q H  II+ GF+SDV+V+
Sbjct: 92  KDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQ 151

Query: 211 SALIDIYAKLGELRNAECVF-------------------------------NEMPTRDLV 239
           ++L+ +Y+ LG++++A  VF                               ++MP ++LV
Sbjct: 152 NSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLV 211

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
            W+ +I G+A+NS  D+A+ LY  ++  G  A+++ + SV+ +C  L  LELG + H ++
Sbjct: 212 TWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYI 271

Query: 300 L--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           L  K   +LIL  AL+DMY +CGS++ A+ VF ++  +D +SW+T+I+G A +GY+++AL
Sbjct: 272 LRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKAL 331

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
           + F  M+ + + P  IT   VL ACSH G VE G   F+SMK+ Y I+P  EHY CM+DL
Sbjct: 332 EYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDL 391

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           LGRAGKL EA K ++EMP +P+A  W ALLGAC++H+N+++A  A K ++ L P+  G Y
Sbjct: 392 LGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGYY 451

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           +LLSNIYA + KW+ V  +R+ M+ RG+ K PG +  E++ ++H F + D +HP+I +I 
Sbjct: 452 VLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQIE 511

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
           +  + ++ K+   GY  + +  L D++ E+KE +I  HSEKLAI + +M       IRI 
Sbjct: 512 RMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEKLAIAYAIMRTKGHDPIRIV 571

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLR+C DCHT  KL +K+  + +++RD  R+HHF+ G CSC DYW
Sbjct: 572 KNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCMDYW 617



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 153/317 (48%), Gaps = 41/317 (12%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
           + L +C +L  L+ +H  +I+     DVF  S LI I      L  A  VF ++   +L 
Sbjct: 20  SFLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLF 79

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
           ++NS I GF+ + D D++ + Y + KR G   D  T   +++ACT    L++G Q H  +
Sbjct: 80  IYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQI 139

Query: 300 LK--YDHDLILNNALLDMYCKCGSLEDAMSVFSR-------------------------- 331
           ++  +D D+ + N+L+ MY   G ++ A  VF R                          
Sbjct: 140 IRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSAR 199

Query: 332 -----MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
                M +K++++WS MISG A+N +  +A++L+  ++   +  N   +V V+ +C+H G
Sbjct: 200 KLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLG 259

Query: 387 FVEDG---WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
            +E G    ++    K    +  G    + ++D+  R G + +A+ +  ++P   DA++W
Sbjct: 260 ALELGERAHDYILRNKMTVNLILG----TALVDMYARCGSIDKAIWVFDQLPGR-DALSW 314

Query: 444 RALLGACKVHRNTDLAI 460
             L+    +H   + A+
Sbjct: 315 TTLIAGFAMHGYAEKAL 331



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 156/333 (46%), Gaps = 40/333 (12%)

Query: 42  LLDDFTR-FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHV 100
           + + F R F   +D  ++       + +G+  D++TY  L+K C  + +++     H  +
Sbjct: 80  IYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQI 139

Query: 101 LSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTT--------------- 145
           +  GF+ + ++ N L+ M+     ++ A  +F ++   +VVSWT+               
Sbjct: 140 IRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSAR 199

Query: 146 ----------------MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
                           MIS Y      DKA+EL   +  EGV  N     +V+ +C  L 
Sbjct: 200 KLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLG 259

Query: 190 IL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            L    + H  I++     ++ + +AL+D+YA+ G +  A  VF+++P RD + W ++I 
Sbjct: 260 ALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIA 319

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH-- 304
           GFA +   ++AL  + RM++AG    + T T+VL AC+   L+E G ++    +K D+  
Sbjct: 320 GFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLEL-FESMKRDYRI 378

Query: 305 --DLILNNALLDMYCKCGSLEDAMSVFSRMIQK 335
              L     ++D+  + G L +A    + M  K
Sbjct: 379 EPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMK 411



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 107/215 (49%), Gaps = 23/215 (10%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++    +Q  GV A+      +I  C    A+E  +  H+++L         L   L+
Sbjct: 228 KAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALV 287

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ +   +++A  +FDQ+P R+ +SWTT+I+ +      +KALE    M + G+ P   
Sbjct: 288 DMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREI 347

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVG---FES---DVFVRSAL------IDIYAKLGELR 224
           T++AVL AC         H G+++ G   FES   D  +   L      +D+  + G+L 
Sbjct: 348 TFTAVLSACS--------HGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLA 399

Query: 225 NAECVFNEMPTR-DLVVWNSIIGG--FAQNSDVDE 256
            AE   NEMP + +  +W +++G     +NS++ E
Sbjct: 400 EAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAE 434


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/593 (39%), Positives = 354/593 (59%), Gaps = 6/593 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+   + M+C G   +  T++ ++    A   V   + +H+ +   GF+   F+   L+
Sbjct: 228 QALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALV 287

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNM 175
           +M+ K + +  A  +FDQMPERN+VSW +MI  +    + D+A+ +   +LRE  V PN 
Sbjct: 288 DMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNE 347

Query: 176 FTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
            + S+VL AC ++  L   RQ+H  ++K G     +V ++L+D+Y K         +F  
Sbjct: 348 VSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQC 407

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           +  RD+V WN ++ GF QN   +EA N +  M+R G   D+++ ++VL +   LA L  G
Sbjct: 408 VGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQG 467

Query: 293 TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
           T +H  ++K  Y  ++ +  +L+ MY KCGSL DA  VF  +   +VISW+ MIS    +
Sbjct: 468 TAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLH 527

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
           G + + ++LFE M    I+P+++T V VL ACSH G VE+G  HF SMKK + ++PG EH
Sbjct: 528 GCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEH 587

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
           Y+CM+DLLGRAG L EA + I  MP +P    W ALLGAC+ + N  +   AA+++  ++
Sbjct: 588 YACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEME 647

Query: 471 PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSH 530
           P +PG Y+LL+N+   S + +E  EVR+ M   G+ KEPGCSWI+V      F   D SH
Sbjct: 648 PYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSH 707

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
              D+I K L+ L + +   GY  +T +V   LE  ++E  + YHSEKLA+ FGL++L  
Sbjct: 708 SSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPI 767

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
              IRI+KNLR CG CHT  KL +K+ ++ I++RD  R+H F DG CSCGDYW
Sbjct: 768 DSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 820



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 204/382 (53%), Gaps = 10/382 (2%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE-- 137
           L+   +   +++ A  +H  ++   +    FL N L+N++ K   L +A +LF       
Sbjct: 148 LLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHF 207

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQL 194
           + +V+WT++I+      M+ +AL L   M   G  PN FT+S++L A  + +++   +QL
Sbjct: 208 KTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQL 267

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
           H  I K GF++++FV +AL+D+YAK  ++ +A  VF++MP R+LV WNS+I GF  N+  
Sbjct: 268 HSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLY 327

Query: 255 DEALNLYKR-MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNA 311
           D A+ ++K  ++      ++ +++SVL AC  +  L  G QVH  V+KY    +  + N+
Sbjct: 328 DRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNS 387

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+DMY KC   ++ + +F  +  +DV++W+ ++ G  QN   +EA   F  M+   I P+
Sbjct: 388 LMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPD 447

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
             +   VL + +    +  G      + K  G          +I +  + G L +A ++ 
Sbjct: 448 EASFSTVLHSSASLAALHQGTAIHDQIIKL-GYVKNMCILGSLITMYAKCGSLVDAYQVF 506

Query: 432 HEMPYEPDAVTWRALLGACKVH 453
            E   + + ++W A++ A ++H
Sbjct: 507 -EGIEDHNVISWTAMISAYQLH 527


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/607 (36%), Positives = 362/607 (59%), Gaps = 9/607 (1%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105
            +  C       A+     M   GV  D+VT + ++  C+       A  +H + +  G 
Sbjct: 142 LSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGL 201

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           + E F+ N +++++ K  +LEE + +FD M  R++V+W ++IS +        A+E+   
Sbjct: 202 DDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCG 261

Query: 166 MLREGVRPNMFTY---SAVLRACDSLIILRQLHCGIIKVGFE-SDVFVRSALIDIYAKLG 221
           M   GV P++ T    ++ +  C  +   R +HC +++ G++  D+   +A++D+YAKL 
Sbjct: 262 MRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLS 321

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVL 280
           ++  A+ +F+ MP RD V WN++I G+ QN    EA+++Y  M K  G    Q T  SVL
Sbjct: 322 KIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVL 381

Query: 281 RACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
            A + L  L+ GT++H   +K   + D+ +   ++D+Y KCG L++AM +F +  ++   
Sbjct: 382 PAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTG 441

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
            W+ +ISG+  +G+  +AL LF  M+   I P+++T V +L ACSHAG V+ G N F  M
Sbjct: 442 PWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMM 501

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
           +  YGI P  +HY+CM+D+ GRAG+L +A   I  MP +PD+  W ALLGAC++H N ++
Sbjct: 502 QTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEM 561

Query: 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNK 518
              A++ +  LDP++ G Y+L+SN+YA   KWD V EVR  +R + + K PG S IEV +
Sbjct: 562 GKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKR 621

Query: 519 QIHAFNVAD--SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHS 576
            ++ F   +  + HPQ ++I + L  L+ K+  +GY PD ++VLQD+E ++KE  +  HS
Sbjct: 622 SVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNNHS 681

Query: 577 EKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGN 636
           E+LAI FG+++      + I KNLR+CGDCH   K  +K+  + I++RD  R+HHF+DG 
Sbjct: 682 ERLAIAFGIINTPPRTPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGY 741

Query: 637 CSCGDYW 643
           CSCGD+W
Sbjct: 742 CSCGDFW 748



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/391 (32%), Positives = 201/391 (51%), Gaps = 17/391 (4%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF-EPETFLVNILLNMHVKFSLLEEAQVL 131
           D+ T+  L++   A      A  +H   L  G    + F    L++ +++F  + +A   
Sbjct: 70  DAFTFPPLLR---AAQGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRA 126

Query: 132 FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC----DS 187
           FD+M  R+V +W  M+S  C      +A+ L   M+ EGV  +  T S+VL  C    D 
Sbjct: 127 FDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDR 186

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
            + L  +H   +K G + ++FV +A+ID+Y KLG L     VF+ M +RDLV WNSII G
Sbjct: 187 ALAL-AMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISG 245

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD---H 304
             Q   V  A+ ++  M+ +G + D  TL S+  A      +  G  VH ++++      
Sbjct: 246 HEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVG 305

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM- 363
           D+I  NA++DMY K   +E A  +F  M  +D +SW+T+I+G  QNG + EA+ +++ M 
Sbjct: 306 DIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQ 365

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           K   +KP   T V VL A SH G ++ G   H  S+K   G++      +C+IDL  + G
Sbjct: 366 KHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKT--GLNLDVYVGTCVIDLYAKCG 423

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           KL EA+ L  + P       W A++    VH
Sbjct: 424 KLDEAMLLFEQTPRRSTG-PWNAVISGVGVH 453


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/622 (39%), Positives = 364/622 (58%), Gaps = 16/622 (2%)

Query: 27  PPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLA 86
           P V   N I R+       ++R    RD    ++    M+  GV  D  T+  ++K C  
Sbjct: 117 PDVFMWNAIIRS-------YSRNNMYRD---TVEMYRWMRWTGVHPDGFTFPYVLKACTE 166

Query: 87  RHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTM 146
                 + ++H  ++  GF  + F+ N L+ ++ K   +  A+V+FD +  R +VSWT++
Sbjct: 167 LLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSI 226

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA---CDSLIILRQLHCGIIKVGF 203
           IS Y       +AL +   M   GV+P+     ++LRA    D L   R +H  +IK+G 
Sbjct: 227 ISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGL 286

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
           E +  +  +L   YAK G +  A+  F++M T ++++WN++I G+A+N   +EA+NL+  
Sbjct: 287 EDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHY 346

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGS 321
           M       D  T+ S + A   +  LEL   +  +V K  Y  D+ +N +L+DMY KCGS
Sbjct: 347 MISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGS 406

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
           +E A  VF R   KDV+ WS MI G   +G   EA+ L+  MK + + PN +T +G+L A
Sbjct: 407 VEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTA 466

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
           C+H+G V++GW  F  MK F  I P  EHYSC++DLLGRAG L EA   I ++P EP   
Sbjct: 467 CNHSGLVKEGWELFHCMKDF-EIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVS 525

Query: 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
            W ALL ACK++R   L   AA K+ +LDP + G Y+ LSN+YA+S  WD VA VR  MR
Sbjct: 526 VWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMR 585

Query: 502 ARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQ 561
            +G+ K+ G S IE+N ++ AF+V D SHP   +I   L+ L ++L  VG+ P T  VL 
Sbjct: 586 EKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLH 645

Query: 562 DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTI 621
           DL  E+KE+++ +HSE++A+ +GL+S   G T+RI KNLR C +CH+  KL +K+  + I
Sbjct: 646 DLNYEEKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREI 705

Query: 622 VIRDPIRYHHFQDGNCSCGDYW 643
           ++RD  R+HHF+DG CSCGDYW
Sbjct: 706 IVRDANRFHHFKDGLCSCGDYW 727



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 128/392 (32%), Positives = 202/392 (51%), Gaps = 13/392 (3%)

Query: 68  HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           H   +DS  YA LI     +  +++   +HN ++  G +   FL+  L+N       +  
Sbjct: 51  HCFNSDSF-YASLIDNSTHKRHLDQ---IHNRLVISGLQHNGFLMTKLVNGSSNLGQICY 106

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A+ LFD+    +V  W  +I +Y    M    +E+  +M   GV P+ FT+  VL+AC  
Sbjct: 107 ARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTE 166

Query: 188 LIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L+       +H  IIK GF SDVFV++ L+ +YAK G +  A+ VF+ +  R +V W SI
Sbjct: 167 LLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSI 226

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           I G+AQN    EAL ++ +M+  G   D   L S+LRA T +  LE G  +H  V+K   
Sbjct: 227 ISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGL 286

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           + +  L  +L   Y KCG +  A S F +M   +VI W+ MISG A+NG+++EA+ LF  
Sbjct: 287 EDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHY 346

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
           M    IKP+ +T+   + A +  G +E   W      K  YG D      + +ID+  + 
Sbjct: 347 MISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVN--TSLIDMYAKC 404

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           G ++ A + + +   + D V W A++    +H
Sbjct: 405 GSVEFA-RRVFDRNSDKDVVMWSAMIMGYGLH 435


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/613 (38%), Positives = 368/613 (60%), Gaps = 38/613 (6%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+  +  T+  L+K C    A  E + +H HVL  G++ + ++   L++M+V+   LE+A
Sbjct: 98  GLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDA 157

Query: 129 -------------------------------QVLFDQMPERNVVSWTTMISAYCDAKMND 157
                                          Q +FD++P ++VVSW  MIS Y +   N 
Sbjct: 158 RKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNK 217

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALI 214
           +ALEL   M++  VRP+  T  +V+ AC    S+ + RQ+H  I   GF S++ + +ALI
Sbjct: 218 EALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALI 277

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           D+Y K GE+  A  +F  +  +D++ WN++IGG+   +   EAL L++ M R+G + +  
Sbjct: 278 DLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDV 337

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKYDHDLI----LNNALLDMYCKCGSLEDAMSVFS 330
           T+ S+L AC  L  +E+G  +HV++ K    +        +L+DMY KCG +E A  VF 
Sbjct: 338 TMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFD 397

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            ++ + + SW+ MI G A +G +  A  +F  M+ + I+P+ IT VG+L ACSH+G ++ 
Sbjct: 398 SILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDL 457

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G + F+SMK+ Y I P  EHY CMIDLLG +G  +EA ++I+ M  EPD V W +LL AC
Sbjct: 458 GRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKAC 517

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
           K++ N +L    A+ ++ ++P++PG+Y+LLSNIYA + +W+EVA++R  +  +G+ K PG
Sbjct: 518 KMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPG 577

Query: 511 CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKED 570
           CS IE++  +H F + D  HP+  +I   L+ +   L   G+ PDT+ VLQ++E E KE 
Sbjct: 578 CSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEG 637

Query: 571 SIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYH 630
           ++++HSEKLAI FGL+S   G  + I KNLR+C +CH   KL +K+  + I+ RD  R+H
Sbjct: 638 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFH 697

Query: 631 HFQDGNCSCGDYW 643
           HF+DG CSC DYW
Sbjct: 698 HFRDGVCSCNDYW 710



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 228/454 (50%), Gaps = 44/454 (9%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHV---KFSLLEEAQVLFDQMPERNVVSWTTM 146
           ++  +++H  ++  G     + ++ L+   V    F  L  A  +F+ + E N++ W TM
Sbjct: 15  LQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTM 74

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGF 203
              +  +     AL L + M+  G+ PN +T+  +L++C      R   Q+H  ++K+G+
Sbjct: 75  FRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGY 134

Query: 204 ESDVFVRSALIDIYAKLGELRNAECV-------------------------------FNE 232
           + D++V ++LI +Y + G L +A  V                               F+E
Sbjct: 135 DLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDE 194

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           +P +D+V WN++I G+A+  +  EAL L+K M +     D+ST+ SV+ AC   A +ELG
Sbjct: 195 IPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELG 254

Query: 293 TQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
            QVH  +    +  +L + NAL+D+Y KCG +E A  +F  +  KDVISW+T+I G    
Sbjct: 255 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHM 314

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGRE 409
              +EAL LF+ M  S   PN +T++ +L AC+H G +E G W H    K+  G+     
Sbjct: 315 NLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASS 374

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA--ICAAKKIL 467
           H + +ID+  + G + EA + + +        +W A++    +H   + A  I +  +  
Sbjct: 375 HRTSLIDMYAKCGDI-EAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKN 433

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
            ++P D  T++ L +  ++S   D    + ++M+
Sbjct: 434 EIEPDDI-TFVGLLSACSHSGMLDLGRHIFRSMK 466



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 177/387 (45%), Gaps = 54/387 (13%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A++    M    VR D  T   ++  C    ++E  + VH+ +   GF     +VN L+
Sbjct: 218 EALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALI 277

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           ++++K   +E A  LF+ +  ++V+SW T+I  Y    +  +AL L   MLR G  PN  
Sbjct: 278 DLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDV 337

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFV-------------RSALIDIYAKLGEL 223
           T  ++L AC         H G I++G    V++             R++LID+YAK G++
Sbjct: 338 TMLSILPAC--------AHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDI 389

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
             A+ VF+ +  R L  WN++I GFA +   + A +++ RM++     D  T   +L AC
Sbjct: 390 EAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSAC 449

Query: 284 TGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           +   +L+LG  +    +K D+                            I   +  +  M
Sbjct: 450 SHSGMLDLGRHI-FRSMKEDYK---------------------------ITPKLEHYGCM 481

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           I  L  +G  +EA ++  +M+   ++P+ +    +L AC     VE G ++ +++ K   
Sbjct: 482 IDLLGHSGLFKEAEEMINTME---MEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEP 538

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKL 430
            +PG   Y  + ++   AG+  E  K+
Sbjct: 539 KNPGS--YVLLSNIYATAGRWNEVAKI 563



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 147/306 (48%), Gaps = 38/306 (12%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALID---IYAKLGELRNAECVFNEMPTR 236
           ++L  C +L  LR +H  +IK G  +  +  S LI+   +      L  A  VF  +   
Sbjct: 7   SLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEP 66

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           +L++WN++  G A +SD   AL LY  M   G   +  T   +L++C        G Q+H
Sbjct: 67  NLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIH 126

Query: 297 VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ-------------------- 334
            HVLK  YD DL ++ +L+ MY + G LEDA  VF +                       
Sbjct: 127 GHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIA 186

Query: 335 -----------KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
                      KDV+SW+ MISG A+ G ++EAL+LF+ M  + ++P+  T+V V+ AC+
Sbjct: 187 SAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACA 246

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
            +  +E G     S    +G     +  + +IDL  + G+++ A  L   + Y+ D ++W
Sbjct: 247 QSASIELG-RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK-DVISW 304

Query: 444 RALLGA 449
             L+G 
Sbjct: 305 NTLIGG 310


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/594 (38%), Positives = 353/594 (59%), Gaps = 10/594 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           RA++ +  MQ  G + DS+T   ++       A+   + +H +    GFE    +   +L
Sbjct: 226 RAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAML 285

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           + + K   +  A+++F  M  RNVVSW TMI  Y     +++A    + ML EGV P   
Sbjct: 286 DTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNV 345

Query: 177 TYSAVLRACDSLIIL---RQLHCGI--IKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
           +    L AC +L  L   R +H  +   K+GF  DV V ++LI +Y+K   +  A  VF 
Sbjct: 346 SMMGALHACANLGDLERGRYVHRLLDEKKIGF--DVSVMNSLISMYSKCKRVDIAASVFG 403

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
            +  + +V WN++I G+AQN  V+EALNL+  M+      D  TL SV+ A   L++   
Sbjct: 404 NLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQ 463

Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
              +H   ++   D ++ +  AL+D + KCG+++ A  +F  M ++ VI+W+ MI G   
Sbjct: 464 AKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGT 523

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           NG+ +EAL LF  M+   +KPN IT + V+ ACSH+G VE+G  +F+SMK+ YG++P  +
Sbjct: 524 NGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMD 583

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
           HY  M+DLLGRAG+L +A K I +MP +P      A+LGAC++H+N +L    A ++ +L
Sbjct: 584 HYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDL 643

Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
           DP D G ++LL+N+YA++  WD+VA VR  M  +GI K PGCS +E+  ++H F    ++
Sbjct: 644 DPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTN 703

Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
           HPQ  +I  +L+ L  ++   GY PDTN +  D+E + KE  +  HSE+LAI FGL++  
Sbjct: 704 HPQSKRIYAYLETLGDEMKAAGYVPDTNSI-HDVEEDVKEQLLSSHSERLAIAFGLLNTR 762

Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            G  I IRKNLR+CGDCH   K  + +  + I++RD  R+HHF++G CSCGDYW
Sbjct: 763 HGTAIHIRKNLRVCGDCHEATKYISLVTGREIIVRDLRRFHHFKNGICSCGDYW 816



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/413 (30%), Positives = 213/413 (51%), Gaps = 12/413 (2%)

Query: 41  SLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHV 100
           ++L  + +    RD   A++    M+C  V      +  L++       +   + +H  V
Sbjct: 112 TMLKGYAKNSTLRD---AVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMV 168

Query: 101 LSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKAL 160
           ++ GF+   F +  ++N++ K   +E+A  +F++MP+R++VSW T+++ Y       +A+
Sbjct: 169 ITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAV 228

Query: 161 ELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIY 217
           ++++ M   G +P+  T  +VL A     +L I R +H    + GFE  V V +A++D Y
Sbjct: 229 QVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTY 288

Query: 218 AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT 277
            K G +R+A  VF  M +R++V WN++I G+AQN + +EA   + +M   G      ++ 
Sbjct: 289 FKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMM 348

Query: 278 SVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK 335
             L AC  L  LE G  VH  +   K   D+ + N+L+ MY KC  ++ A SVF  +  K
Sbjct: 349 GALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHK 408

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNH 394
            V++W+ MI G AQNG   EAL LF  M+   IKP+  T+V V+ A +         W H
Sbjct: 409 TVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIH 468

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
             +++    +D      + +ID   + G +Q A KL   M  E   +TW A++
Sbjct: 469 GLAIRTL--MDKNVFVCTALIDTHAKCGAIQTARKLFDLMQ-ERHVITWNAMI 518



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 188/354 (53%), Gaps = 9/354 (2%)

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           ++  GF  E      L+++  KF+ + EA  +F+ +  +  V + TM+  Y        A
Sbjct: 67  IIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDA 126

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDI 216
           +     M  + V P ++ ++ +L+     + LR   ++H  +I  GF+S++F  +A++++
Sbjct: 127 VRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNL 186

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           YAK  ++ +A  +F  MP RDLV WN+++ G+AQN     A+ +  +M+ AG   D  TL
Sbjct: 187 YAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITL 246

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQ 334
            SVL A   L  L +G  +H +  +   + ++N   A+LD Y KCGS+  A  VF  M  
Sbjct: 247 VSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSS 306

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WN 393
           ++V+SW+TMI G AQNG S+EA   F  M    ++P  ++++G L AC++ G +E G + 
Sbjct: 307 RNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYV 366

Query: 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           H    +K  G D      + +I +  +  ++  A  +   + ++   VTW A++
Sbjct: 367 HRLLDEKKIGFDVSV--MNSLISMYSKCKRVDIAASVFGNLKHKT-VVTWNAMI 417



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 162/311 (52%), Gaps = 13/311 (4%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           +L  C SL  L Q+   IIK GF ++   ++ LI ++ K   +  A  VF  +  +  V+
Sbjct: 50  LLELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVL 109

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           +++++ G+A+NS + +A+  Y+RM+           T +L+       L  G ++H  V+
Sbjct: 110 YHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVI 169

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
              +  +L    A++++Y KC  +EDA  +F RM Q+D++SW+T+++G AQNG+++ A++
Sbjct: 170 TNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQ 229

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY----SCM 414
           +   M+ +  KP+ IT+V VL A +    +  G    +S+   Y    G E+     + M
Sbjct: 230 VVLQMQEAGQKPDSITLVSVLPAVADLKALRIG----RSIHG-YAFRAGFEYMVNVATAM 284

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474
           +D   + G ++ A +L+ +     + V+W  ++     +  ++ A     K+L+ +  +P
Sbjct: 285 LDTYFKCGSVRSA-RLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLD-EGVEP 342

Query: 475 GTYILLSNIYA 485
               ++  ++A
Sbjct: 343 TNVSMMGALHA 353


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 242/637 (37%), Positives = 369/637 (57%), Gaps = 51/637 (8%)

Query: 52  QRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           +R+ PR A+     ++      D+     ++K C      +  K +H  VL  G + + F
Sbjct: 101 KRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVF 160

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           + N L+ M+ + + +E A+++FD+M ER+VVSW+TMI +    K  D ALEL+  M    
Sbjct: 161 VGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQ 220

Query: 171 VRP---------NMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFV--RSALIDIYAK 219
           VRP         N+F  +A +R      + + +H  +I+      + V   +AL+D+YAK
Sbjct: 221 VRPSEVAMVSMVNLFADTANMR------MGKAMHAYVIRNSNNEHMGVPTTTALLDMYAK 274

Query: 220 LG-------------------------------ELRNAECVFNEMPTRDLVVWNSIIGGF 248
            G                                L  A  +F+    RD+++W +++  +
Sbjct: 275 CGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAY 334

Query: 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDL 306
           AQ + +D+A NL+ +M+ +G    + T+ S+L  C     L+LG  VH ++ K   + D 
Sbjct: 335 AQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDC 394

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
           ILN AL+DMY KCG +  A  +F   I +D+  W+ +I+G A +GY +EAL +F  M+  
Sbjct: 395 ILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQ 454

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
            +KPN IT +G+L ACSHAG V +G   F+ M   +G+ P  EHY CM+DLLGRAG L E
Sbjct: 455 GVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDE 514

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           A ++I  MP +P+ + W AL+ AC++H+N  L   AA ++L ++P++ G  +L+SNIYA 
Sbjct: 515 AHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAA 574

Query: 487 SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
           + +W + A VRKTM+  G+ KEPG S IEVN  +H F + D SHPQI +IN+ L  + +K
Sbjct: 575 ANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRK 634

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           L   GY PDT+ VL +++ E+KE ++ YHSEKLA+ FGL+S      IRI KNLR+C DC
Sbjct: 635 LNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDC 694

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           H   KL +K+  + I++RD  R+HHF++G CSCGDYW
Sbjct: 695 HAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 164/355 (46%), Gaps = 52/355 (14%)

Query: 143 WTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGII 199
           W  +I++Y        AL +   + +     + F   +VL+AC  +    + +++H  ++
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN 259
           K G + DVFV +AL+ +Y +   +  A  VF++M  RD+V W+++I   ++N + D AL 
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD----LILNNALLDM 315
           L + M        +  + S++      A + +G  +H +V++  ++    +    ALLDM
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDM 271

Query: 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMISGL---------------AQN---------- 350
           Y KCG L  A  +F+ + QK V+SW+ MI+G                 QN          
Sbjct: 272 YAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAML 331

Query: 351 -GYSQ-----EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYG 403
             Y+Q     +A  LF+ M+ S ++P  +TIV +L  C+ AG ++ G W H         
Sbjct: 332 SAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSY------- 384

Query: 404 IDPGREHYSC-----MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           ID  R    C     ++D+  + G +  A +L  E     D   W A++    +H
Sbjct: 385 IDKERVEVDCILNTALVDMYAKCGDINAAGRLFIE-AISRDICMWNAIITGFAMH 438



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 146/304 (48%), Gaps = 17/304 (5%)

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           WN +I  + + +    ALN+Y ++++  F  D     SVL+AC  ++  +LG ++H  VL
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K   D D+ + NAL+ MY +C  +E A  VF +M+++DV+SWSTMI  L++N     AL+
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY-----SC 413
           L   M   +++P+ + +V ++   +    +  G    K+M  +   +   EH      + 
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMG----KAMHAYVIRNSNNEHMGVPTTTA 267

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           ++D+  + G L  A +L + +  +   V+W A++  C      + A        N   +D
Sbjct: 268 LLDMYAKCGHLGLARQLFNGLT-QKTVVSWTAMIAGCIRSNRLEEARALFDSTQN---RD 323

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGI--TKEPGCSWIEVNKQIHAFNVADSSHP 531
              +  + + YA +   D+   +   MR  G+  TK    S + +     A ++    H 
Sbjct: 324 VMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHS 383

Query: 532 QIDK 535
            IDK
Sbjct: 384 YIDK 387


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/645 (37%), Positives = 397/645 (61%), Gaps = 22/645 (3%)

Query: 14  PSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRF----CYQRDLPRAMKAMHAMQCHG 69
           PS+       ++ PP+ S   IT N ++   D  +     C Q +L +A++ + +++ + 
Sbjct: 13  PSNATFLPRPSLKPPICS---ITLNPTASTADNNKLIQSLCKQGNLTQALELL-SLEPNP 68

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
            +    TY  LI  C  ++++ +A+ VH H+L  GF+ + FL   L+NM+  F  ++ A+
Sbjct: 69  AQH---TYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNAR 125

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---D 186
            +FD+   R +  +  +  A   A   ++ L +   M   G+  + FTY+ VL+AC   +
Sbjct: 126 KVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASE 185

Query: 187 SLIIL----RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
             + L    R++H  I++ G++  V + + L+D+YAK G + NA CVFN+MP +++V W+
Sbjct: 186 CFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWS 245

Query: 243 SIIGGFAQNSDVDEALNLYKRM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           ++I  +A+N    EAL L++ +  +      +  T+ SVL+AC  LA LE G  +H ++L
Sbjct: 246 AMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYIL 305

Query: 301 KYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           +   D IL   +AL+ MY +CG LE    VF +M ++DV+SW+++IS    +G+ ++A+ 
Sbjct: 306 RKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIG 365

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
           +FE M  + ++P+ I+ V VL ACSHAG V++G   F SM   +GI P  EHY+CM+DLL
Sbjct: 366 IFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLL 425

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
           GRA +L+EA K+I  M  EP    W +LLG+C++H N +LA  A+ ++ +L+P + G Y+
Sbjct: 426 GRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFDLEPTNAGNYV 485

Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
           LL++IYA +  WD V  V+K + ARG+ K PG SWIEV ++I++F   D  +P++++++ 
Sbjct: 486 LLADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHA 545

Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRK 598
            L  L  +L   GY P T  VL DL+  +KE  +  HSEKLA+ FGL++ ++G+ IRI K
Sbjct: 546 LLVKLSMELKEEGYVPQTKVVLYDLKAAEKERIVLGHSEKLAVAFGLINSSKGEVIRITK 605

Query: 599 NLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +LR+C DCH+F K  +K  N+ I++RD  R+HHF+DG CSCGDYW
Sbjct: 606 SLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRDGVCSCGDYW 650


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/557 (38%), Positives = 350/557 (62%), Gaps = 6/557 (1%)

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
           + + +H H++  G +    + + L+N + K  L   +  +F++   ++  +W+++IS++ 
Sbjct: 72  KGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVISSFA 131

Query: 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVF 208
             +    A++    M+ E + P+   + +  +AC  L    + + +HC +IK G++ DVF
Sbjct: 132 QNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVF 191

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           V S+L+D+YAK G+++ A  VF+EMP R++V W+ +I G+ Q  + +EA+ L+K     G
Sbjct: 192 VGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEG 251

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAM 326
              +  TL+SV+R C    LLELG Q+H    K  +DL   + ++L+ +Y KCG +E A 
Sbjct: 252 LDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAY 311

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            VF  +  K++  W+ M+   AQ+ +++EA  LF  M+ + ++PN+IT + VL+ACSHAG
Sbjct: 312 RVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAG 371

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            VE+G  +F  MKK Y I+PG +HY+ M+DLLGRAGKLQEA+ +I  MP EP    W A 
Sbjct: 372 LVEEGKKYFALMKK-YEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAF 430

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           +  C++H NTDLA  AA K+  L     G +++LSN YA + ++++ A+ RK +R RG+ 
Sbjct: 431 ITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRYEDAAKARKMLRDRGVK 490

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           KE G SWIE   ++H F   D  H ++ +I + L+ L +++   GY  DT++VL+++  E
Sbjct: 491 KETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMERAGYVADTSFVLREVGSE 550

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
           +K  +I+YHSE+LAI FGL+S+  G+ IRI KNLR+CGDCH   K  +K+  + I++RD 
Sbjct: 551 EKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGDCHNAIKFISKLSGRVIIVRDN 610

Query: 627 IRYHHFQDGNCSCGDYW 643
            R+H F+DG CSC DYW
Sbjct: 611 NRFHRFEDGKCSCADYW 627



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 164/304 (53%), Gaps = 10/304 (3%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D   +    K C      +  K VH  V+  G++ + F+ + L++M+ K   ++EA+ +F
Sbjct: 154 DDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVF 213

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL- 191
           D+MP RNVVSW+ MI  Y     +++A+ L    L EG+  N FT S+V+R C S  +L 
Sbjct: 214 DEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLE 273

Query: 192 --RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
             +Q+H    K  ++   FV S+LI +Y+K G +  A  VF+E+P ++L +WN+++   A
Sbjct: 274 LGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACA 333

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN 309
           Q++   EA +L+ +M+ AG   +  T   VL AC+   L+E G +    + KY+ +    
Sbjct: 334 QHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALMKKYEIEPGTQ 393

Query: 310 N--ALLDMYCKCGSLEDAMSVFSRMIQKDVIS-WSTMISGLAQNGYSQEAL----KLFES 362
           +  +++D+  + G L++A+SV   M  +   S W   I+G   +G +  A     K+FE 
Sbjct: 394 HYASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFEL 453

Query: 363 MKVS 366
             VS
Sbjct: 454 GAVS 457



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 148/305 (48%), Gaps = 7/305 (2%)

Query: 187 SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
           SL+  +Q+H  IIK G +    V   LI+ Y+K      +  VF E   +    W+S+I 
Sbjct: 69  SLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVIS 128

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDH 304
            FAQN +   A+  + RM       D     S  +AC  L   ++G  VH  V+K  YD 
Sbjct: 129 SFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDV 188

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           D+ + ++L+DMY KCG +++A +VF  M  ++V+SWS MI G  Q G  +EA++LF+   
Sbjct: 189 DVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEAL 248

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
           +  +  N  T+  V+  C  A  +E G   H    K  Y  D      S +I L  + G 
Sbjct: 249 LEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSY--DLSGFVGSSLISLYSKCGL 306

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           ++ A ++  E+P + +   W A+L AC  H +T  A     K+ N   + P     L  +
Sbjct: 307 IEGAYRVFDEVPIK-NLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMR-PNFITFLCVL 364

Query: 484 YANSQ 488
           YA S 
Sbjct: 365 YACSH 369



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 30/228 (13%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           AM+        G+  +  T + +I+ C +   +E  K +H       ++   F+ + L++
Sbjct: 240 AMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLIS 299

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++ K  L+E A  +FD++P +N+  W  M+ A        +A +L   M   G+RPN  T
Sbjct: 300 LYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFIT 359

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVR-----------SALIDIYAKLGELRNA 226
           +  VL AC         H G+++ G +    ++           ++++D+  + G+L+ A
Sbjct: 360 FLCVLYACS--------HAGLVEEGKKYFALMKKYEIEPGTQHYASMVDLLGRAGKLQEA 411

Query: 227 ECVFNEMPTRDL-VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
             V   MPT     VW + I G   + + D           A FAAD+
Sbjct: 412 LSVIKGMPTEPTESVWGAFITGCRIHGNTD----------LAAFAADK 449


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/547 (41%), Positives = 330/547 (60%), Gaps = 21/547 (3%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           +P T   NI+L  H     + +A+  FD MP ++V SW TMISA     +  +A  L   
Sbjct: 101 QPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSA 160

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFE-------SDVFVRSALIDIYA 218
           M  +    N  ++SA++           + CG +    E         V   +A+I  Y 
Sbjct: 161 MPEK----NCVSWSAMVSG--------YVACGDLDAAVECFYAAPMRSVITWTAMITGYM 208

Query: 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278
           K G +  AE +F EM  R LV WN++I G+ +N   ++ L L++ M   G   +  +LTS
Sbjct: 209 KFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTS 268

Query: 279 VLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD 336
           VL  C+ L+ L+LG QVH  V K     D     +L+ MY KCG L+DA  +F ++ +KD
Sbjct: 269 VLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKD 328

Query: 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
           V+ W+ MISG AQ+G  ++AL+LF+ MK   +KP++IT V VL AC+HAG V+ G  +F 
Sbjct: 329 VVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFN 388

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
           +M++ +GI+   EHY+CM+DLLGRAGKL EAV LI  MP++P    +  LLGAC++H+N 
Sbjct: 389 TMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNL 448

Query: 457 DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEV 516
           +LA  AAK +L LDP     Y+ L+N+YA   +WD VA +R++M+   + K PG SWIE+
Sbjct: 449 NLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEI 508

Query: 517 NKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHS 576
           N  +H F  +D  HP++  I++ LK L +K+   GY PD  +VL D+  E KE  + +HS
Sbjct: 509 NSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHS 568

Query: 577 EKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGN 636
           EKLAI FGL+ +  G  IR+ KNLR+CGDCH+  K  + +E + I++RD  R+HHF+DG 
Sbjct: 569 EKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKDGF 628

Query: 637 CSCGDYW 643
           CSC DYW
Sbjct: 629 CSCRDYW 635



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 104/227 (45%), Gaps = 31/227 (13%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            ++    M   GV+ ++++   ++  C    A++  K VH  V       +T     L++
Sbjct: 247 GLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVS 306

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L++A  LF Q+P ++VV W  MIS Y       KAL L   M +EG++P+  T
Sbjct: 307 MYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWIT 366

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVR------------SALIDIYAKLGELRN 225
           + AVL AC+        H G++ +G +    +R            + ++D+  + G+L  
Sbjct: 367 FVAVLLACN--------HAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSE 418

Query: 226 AECVFNEMPTRD-LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
           A  +   MP +    ++ +++G          A  ++K +  A FAA
Sbjct: 419 AVDLIKSMPFKPHPAIYGTLLG----------ACRIHKNLNLAEFAA 455



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/324 (20%), Positives = 136/324 (41%), Gaps = 70/324 (21%)

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN-SDVDEALNLYKR 263
           ++V   + LI  Y + G++ +A  VF +M  +  V WNSI+  FA+     + A  L+++
Sbjct: 39  NNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEK 98

Query: 264 MKRA----------------------GF-----AADQSTLTSVLRACTGLALLELGTQVH 296
           + +                       GF       D ++  +++ A   + L  +G    
Sbjct: 99  IPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGL--MGEARR 156

Query: 297 VHVLKYDHDLILNNALLDMYCKCGSLEDAMS----------------------------- 327
           +     + + +  +A++  Y  CG L+ A+                              
Sbjct: 157 LFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELA 216

Query: 328 --VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F  M  + +++W+ MI+G  +NG +++ L+LF +M  + +KPN +++  VL  CS+ 
Sbjct: 217 ERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNL 276

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
             ++ G    + + K   +       + ++ +  + G L++A +L  ++P + D V W A
Sbjct: 277 SALQLGKQVHQLVCKC-PLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRK-DVVCWNA 334

Query: 446 LLGACKVHRNTDLAICAAKKILNL 469
           ++     H        A KK L L
Sbjct: 335 MISGYAQHG-------AGKKALRL 351



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 89/171 (52%), Gaps = 20/171 (11%)

Query: 296 HVHVLKYDHD-LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN-GYS 353
           H H  +++++ +I +N L+  Y +CG ++ A+ VF  M  K  ++W+++++  A+  G+ 
Sbjct: 30  HTHQHEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHF 89

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFAC--SHAGFVEDGWNHFKSMKKFYGIDPGRE-- 409
           + A +LFE +     +PN ++   ++ AC   H G V D    F SM       P ++  
Sbjct: 90  EYARQLFEKIP----QPNTVS-YNIMLACHWHHLG-VHDARGFFDSM-------PLKDVA 136

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            ++ MI  L + G + EA +L   MP E + V+W A++       + D A+
Sbjct: 137 SWNTMISALAQVGLMGEARRLFSAMP-EKNCVSWSAMVSGYVACGDLDAAV 186


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/657 (36%), Positives = 372/657 (56%), Gaps = 71/657 (10%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+ A   M   G+     T+  ++  C A  A++  K VH+ V+  G      + N LLN
Sbjct: 129 AVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLN 188

Query: 118 M-------------------------------HVKFSLLEEAQVLFDQMPERNVVSWTTM 146
           M                               H++F   + A  LFDQM + ++VSW ++
Sbjct: 189 MYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSI 248

Query: 147 ISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVG 202
           I+ YC    + +ALE   FML+   ++P+ FT  +VL AC   +SL + +Q+H  I++  
Sbjct: 249 ITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRAD 308

Query: 203 FESDVFVRSALIDIYAK---------------------------------LGELRNAECV 229
            +    V +ALI +YAK                                 +G++  A  +
Sbjct: 309 VDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAI 368

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F+ +  RD+V W ++I G+AQN  + +AL L++ M R G   +  TL +VL   + LA L
Sbjct: 369 FDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASL 428

Query: 290 ELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQ-KDVISWSTMISG 346
           + G Q+H   ++ +    + + NAL+ MY + GS++DA  +F+ +   +D ++W++MI  
Sbjct: 429 DHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILS 488

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
           LAQ+G   EA++LFE M    +KP++IT VGVL AC+H G VE G ++F  MK  + I+P
Sbjct: 489 LAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEP 548

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
              HY+CMIDLLGRAG L+EA   I  MP EPD V W +LL +C+VH+  DLA  AA+K+
Sbjct: 549 TSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKL 608

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
           L +DP + G Y+ L+N  +   KW++ A+VRK+M+ + + KE G SW+++  ++H F V 
Sbjct: 609 LLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVE 668

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D+ HPQ D I   +  + +++  +G+ PDTN VL DLE E KE  +++HSEKLAI F L+
Sbjct: 669 DALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALI 728

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +  +  T+RI KNLR+C DCH+  +  + +  + I++RD  R+HHF+DG+CSC DYW
Sbjct: 729 NTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 207/448 (46%), Gaps = 86/448 (19%)

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
           TF  N +L+ H K   L+ A+ +FD++P+ + VSWTTMI  Y    +   A+   + M+ 
Sbjct: 79  TFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVS 138

Query: 169 EGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
            G+ P  FT++ VL +C    +L + +++H  ++K+G    V V ++L+++YAK G+   
Sbjct: 139 SGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVM 198

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM--------------------- 264
           A+ VF+ M  +D   WN++I    Q    D AL L+ +M                     
Sbjct: 199 AKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYD 258

Query: 265 -----------KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNA 311
                      K +    D+ TL SVL AC     L+LG Q+H H+++ D D+   + NA
Sbjct: 259 IRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNA 318

Query: 312 LLDMYCKCGSLE---------------------------------DAMSVFSRMIQKDVI 338
           L+ MY K G++E                                  A ++F  +  +DV+
Sbjct: 319 LISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVV 378

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
           +W+ MI G AQNG   +AL LF  M     KPN  T+  VL   S    ++ G       
Sbjct: 379 AWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHG------- 431

Query: 399 KKFYGIDPGREHYS------CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
           K+ + +    E  S       +I +  R+G +++A K+ + +    D +TW +++ +   
Sbjct: 432 KQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQ 491

Query: 453 HRNTDLAICAAKKIL--NLDPQDPGTYI 478
           H   + AI   +K+L  NL P D  TY+
Sbjct: 492 HGLGNEAIELFEKMLRINLKP-DHITYV 518



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/426 (28%), Positives = 201/426 (47%), Gaps = 63/426 (14%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAM-QCHGVRADSVTYAE 79
           F     P + S N+I           T +C+Q    RA++    M +   ++ D  T   
Sbjct: 234 FDQMTDPDIVSWNSI----------ITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGS 283

Query: 80  LIKCCLARHAVEEAKLVHNHVL--------------------SGGFEPETFLVNI----- 114
           ++  C  R +++  K +H H++                    SG  E    +V I     
Sbjct: 284 VLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPS 343

Query: 115 --------LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
                   LL+ + K   ++ A+ +FD +  R+VV+WT MI  Y    +   AL L   M
Sbjct: 344 LNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLM 403

Query: 167 LREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
           +REG +PN +T +AVL    SL  L   +QLH   I++   S V V +ALI +Y++ G +
Sbjct: 404 IREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSI 463

Query: 224 RNAECVFNEMPT-RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           ++A  +FN + + RD + W S+I   AQ+   +EA+ L+++M R     D  T   VL A
Sbjct: 464 KDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSA 523

Query: 283 CTGLALLELGTQVHVHVLKYDHDLILNNA----LLDMYCKCGSLEDAMSVFSRM-IQKDV 337
           CT + L+E G + + +++K  H++   ++    ++D+  + G LE+A +    M I+ DV
Sbjct: 524 CTHVGLVEQG-KSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDV 582

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN----YITIVGVLFACSHAGFVEDGWN 393
           ++W +++S    + Y   A    E  K+  I PN    Y+ +   L AC   G  ED   
Sbjct: 583 VAWGSLLSSCRVHKYVDLAKVAAE--KLLLIDPNNSGAYLALANTLSAC---GKWEDAAK 637

Query: 394 HFKSMK 399
             KSMK
Sbjct: 638 VRKSMK 643



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 120/261 (45%), Gaps = 66/261 (25%)

Query: 190 ILRQLHCGIIKVGFES-DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
           I R +H  IIK G     VF+ + L+++Y K G   +A  +F+EMP +    WN+I+   
Sbjct: 30  IGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAH 89

Query: 249 AQNSDVDEA------------------------LNLYK-------RMKRAGFAADQSTLT 277
           A+  ++D A                        L L+K       RM  +G +  Q T T
Sbjct: 90  AKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFT 149

Query: 278 SVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNALLDMYCKCGS------------LE 323
           +VL +C     L++G +VH  V+K     +  + N+LL+MY KCG             L+
Sbjct: 150 NVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLK 209

Query: 324 D-------------------AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM- 363
           D                   A+++F +M   D++SW+++I+G    GY   AL+ F  M 
Sbjct: 210 DTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFML 269

Query: 364 KVSRIKPNYITIVGVLFACSH 384
           K S +KP+  T+  VL AC++
Sbjct: 270 KSSSLKPDKFTLGSVLSACAN 290



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 291 LGTQVHVHVLKYDH---DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
           +G  +H  ++K+      + L N LL++Y K GS  DA  +F  M  K   SW+T++S  
Sbjct: 30  IGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAH 89

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
           A+ G    A ++F+ +     +P+ ++   ++   +H G  +   + F  M    GI P
Sbjct: 90  AKAGNLDSARRVFDEIP----QPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVS-SGISP 143


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/576 (39%), Positives = 352/576 (61%), Gaps = 5/576 (0%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D  T  EL++ C  R ++   K  H   +  G   +T   NIL+N++ K    + A+ +F
Sbjct: 55  DVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVF 114

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS---LI 189
           D M  R+++SW TMI+ Y   + + +AL+L   M REG +   FT S+ L AC +   +I
Sbjct: 115 DAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAII 174

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
             +QLH   IK+  +S  FV +A +D+YAK   +++A  VF  MP +  V W+S+  GF 
Sbjct: 175 ECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFV 234

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           QN   +E L L++  +R G    + T++S+L  C  LAL+  GTQVH  ++K  +  +L 
Sbjct: 235 QNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLF 294

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           +  +L+D+Y KCG +E +  VF+ M +K+V+ W+ MI+  +++ +S EA+ LFE M+   
Sbjct: 295 VATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVG 354

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           I PN +T + +L ACSH G VE+G ++F  +      +P   HYSCM+D+LGR+GK  EA
Sbjct: 355 IFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEA 414

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487
            KL+ +MP+EP A  W +LLG+ ++H+N  LA  AA+++  L+P++ G ++LLSN+YA S
Sbjct: 415 WKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAAS 474

Query: 488 QKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL 547
             W+ V   RK +R  G  KE G SWIE   +IH F   +  HP I  +   L+ +  ++
Sbjct: 475 GNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHEM 534

Query: 548 VGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCH 607
             + +  +T   L D+  +QKE+ +++HSEKLA  FGL+SL     I I KNLRICGDCH
Sbjct: 535 RKISHRANTQCDLHDVHADQKEELLKHHSEKLAFAFGLISLPPNIPITIYKNLRICGDCH 594

Query: 608 TFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +F K+ + +  + +++RD  R+HHF+DG+CSCGD+W
Sbjct: 595 SFMKIVSCITERQVIVRDINRFHHFKDGSCSCGDFW 630



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 177/332 (53%), Gaps = 31/332 (9%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           + + R+   A+K    M   G +    T +  +  C A++A+ E K +H   +    +  
Sbjct: 132 YTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSS 191

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
           +F+    L+++ K +++++A  +F+ MPE+  V+W+++ + +    ++++ L L     R
Sbjct: 192 SFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQR 251

Query: 169 EGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           EG++   FT S++L  C SL ++    Q+H  I+K GF  ++FV ++L+D+YAK G++  
Sbjct: 252 EGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEK 311

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           +  VF +M  +++V+WN++I  F++++   EA+ L+++M++ G   ++ T  S+L AC+ 
Sbjct: 312 SYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSH 371

Query: 286 LALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
             L+E G        ++  +L+L++                    R  + +V+ +S M+ 
Sbjct: 372 TGLVEEG--------RHYFNLLLSD--------------------RTAEPNVLHYSCMVD 403

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
            L ++G + EA KL + M        + +++G
Sbjct: 404 VLGRSGKTDEAWKLLDKMPFEPTASMWGSLLG 435


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/577 (37%), Positives = 355/577 (61%), Gaps = 6/577 (1%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           DS T+A ++   +    +   + +H+ V+   F    F+ N LL+ + K   + +A+ LF
Sbjct: 209 DSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLF 268

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI--- 189
           D+MPE++ VS+  +IS Y     +  A +L   +         F ++ +L    + +   
Sbjct: 269 DEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWE 328

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           + RQ+H   I    +S++ V ++L+D+YAK G+   AE +F  +  R  V W ++I  + 
Sbjct: 329 MGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYV 388

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           Q    +E L L+ +M++A   ADQ+T  S+LRA   +A L LG Q+H  ++K  +  ++ 
Sbjct: 389 QKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVF 448

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
             +ALLD+Y KCGS++DA+  F  M  ++++SW+ MIS  AQNG ++  LK F+ M +S 
Sbjct: 449 SGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSG 508

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           ++P+ ++ +GVL ACSH+G VE+G  HF SM + Y +DP REHY+ ++D+L R+G+  EA
Sbjct: 509 LQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEA 568

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP-QDPGTYILLSNIYAN 486
            KL+ EMP +PD + W ++L AC++H+N +LA  AA ++ N++  +D   Y+ +SNIYA 
Sbjct: 569 EKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAA 628

Query: 487 SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
           + +W+ V++V K MR RG+ K P  SW+E+  + H F+  D  HPQI++I K +  L + 
Sbjct: 629 AGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKT 688

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           +  +GY PDT+  L + + + K +S++YHSE+LAI F L+S  +G  I + KNLR C DC
Sbjct: 689 MEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDC 748

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           H   K+ +K+  + I +RD  R+HHF+DG CSCGD+W
Sbjct: 749 HAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 785



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 186/393 (47%), Gaps = 48/393 (12%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  G   D VT+  L+  C       +   V   ++  G++    + N L++ + K + 
Sbjct: 135 MQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNR 194

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L+ A  LF +MPE                                    + FT++AVL A
Sbjct: 195 LDLACQLFKEMPE-----------------------------------IDSFTFAAVLCA 219

Query: 185 ---CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
               D +++ +Q+H  +IK  F  +VFV +AL+D Y+K   + +A  +F+EMP +D V +
Sbjct: 220 NIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSY 279

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH--V 299
           N II G+A +     A +L++ ++   F   Q    ++L   +     E+G Q+H    V
Sbjct: 280 NVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIV 339

Query: 300 LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
              D ++++ N+L+DMY KCG  E+A  +F+ +  +  + W+ MIS   Q G+ +E L+L
Sbjct: 340 TTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQL 399

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY---GIDPGREHYSCMID 416
           F  M+ + +  +  T   +L A +    +  G    K +  F    G        S ++D
Sbjct: 400 FNKMRQASVIADQATFASLLRASASIASLSLG----KQLHSFIIKSGFMSNVFSGSALLD 455

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           +  + G +++AV+   EMP + + V+W A++ A
Sbjct: 456 VYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISA 487



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 39/239 (16%)

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           +I  Y K G L  A  +F+ M  R  V W  +IGG++Q +   EA  L+ +M+R G   D
Sbjct: 84  MISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPD 143

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
             T  ++L  C G  +    TQV   ++K  YD  LI+ N L+D YCK   L+ A  +F 
Sbjct: 144 YVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFK 203

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            M + D  +++ ++          + + L + +    IK N++                 
Sbjct: 204 EMPEIDSFTFAAVLCA----NIGLDDIVLGQQIHSFVIKTNFV----------------- 242

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            WN F S              + ++D   +   + +A KL  EMP E D V++  ++  
Sbjct: 243 -WNVFVS--------------NALLDFYSKHDSVIDARKLFDEMP-EQDGVSYNVIISG 285



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 110/229 (48%), Gaps = 31/229 (13%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            ++  + M+   V AD  T+A L++   +  ++   K +H+ ++  GF    F  + LL+
Sbjct: 396 GLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLD 455

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++ K   +++A   F +MP+RN+VSW  MISAY      +  L+    M+  G++P+  +
Sbjct: 456 VYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVS 515

Query: 178 YSAVLRACDSLIILRQLHCGIIKVG---FESDVFV---------RSALIDIYAKLGELRN 225
           +  VL AC         H G+++ G   F S   +          ++++D+  + G    
Sbjct: 516 FLGVLSACS--------HSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNE 567

Query: 226 AECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           AE +  EMP   D ++W+S++           A  ++K  + A  AADQ
Sbjct: 568 AEKLMAEMPIDPDEIMWSSVLN----------ACRIHKNQELARRAADQ 606



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 4/191 (2%)

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCK 318
           N+  R+ + GF  D  T  S  R    L   EL     +       + +  N ++  Y K
Sbjct: 33  NIDARIVKTGF--DPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVK 90

Query: 319 CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
            G+L +A  +F  M+++  ++W+ +I G +Q    +EA +LF  M+    +P+Y+T V +
Sbjct: 91  SGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTL 150

Query: 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP 438
           L  C +   + +     ++     G D      + ++D   ++ +L  A +L  EMP E 
Sbjct: 151 LSGC-NGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMP-EI 208

Query: 439 DAVTWRALLGA 449
           D+ T+ A+L A
Sbjct: 209 DSFTFAAVLCA 219


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/569 (39%), Positives = 346/569 (60%), Gaps = 20/569 (3%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y + I  C+ R A+ E + VH  +++ G+ P  +L   L+ M+ +   LE+A+ + D MP
Sbjct: 38  YDDAITECVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMP 97

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHC 196
           ERNVVSWT MIS Y   +  D+A EL I MLR G+                   ++Q+H 
Sbjct: 98  ERNVVSWTAMISGYSQNERPDQAWELFIMMLRAGIHQ-----------------VKQVHA 140

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
             +K  FE  +FV S+L+D+YAK   ++ A  VF+ +P RD+V + +I+ G+ Q    +E
Sbjct: 141 FAVKTNFELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEE 200

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNALLD 314
           AL+L++ +   G   +Q T T++L A +GL+ ++ G QVH  +L+ +      L N+L+D
Sbjct: 201 ALDLFRLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLID 260

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           MY KCG L  +  VF  M ++ V+SW+ M+ G  ++G + E ++LF SM    +KP+ +T
Sbjct: 261 MYSKCGKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSM-CDEVKPDSVT 319

Query: 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
           ++ VL   SH G V++G + F  + K        EHY C+IDLLGR+G+LQ+A+ LI +M
Sbjct: 320 LLAVLSGYSHGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNLIEKM 379

Query: 435 PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494
           P++P    W +LLGAC+VH N  +    A+K+L+++P++ G Y++LSNIYA +  W +V 
Sbjct: 380 PFQPTRAIWGSLLGACRVHTNVHVGEFVAQKLLDIEPENAGNYVILSNIYAAAGMWKDVF 439

Query: 495 EVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAP 554
            VRK M  + + KEPG SW+ ++K IH F+  +  HP+ + IN  +K +   +   G+ P
Sbjct: 440 RVRKLMLKKTVIKEPGRSWMILDKVIHTFHSCERFHPRKEDINAKIKEIYVAIKAAGFVP 499

Query: 555 DTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTA 614
           D + VL D++ EQKE  +  HSEKLAI FGLMS     TI++ KNLRIC DCH FAK  +
Sbjct: 500 DLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRICVDCHNFAKFVS 559

Query: 615 KMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           K+  + I +RD  R+H   +G C+CGDYW
Sbjct: 560 KVYGREISLRDKNRFHLITEGACTCGDYW 588



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 138/328 (42%), Gaps = 45/328 (13%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G++ + VT+  L+       +++  K VH  +L         L N L++M+ K   L  +
Sbjct: 212 GMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYS 271

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +FD MPER+VVSW  M+  Y    +  + ++L   M  E V+P+  T  AVL      
Sbjct: 272 RRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMCDE-VKPDSVTLLAVLSGYS-- 328

Query: 189 IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
                 H G++  G   D+F       I  +   L N E             +  +I   
Sbjct: 329 ------HGGLVDEGL--DMFDH-----IVKEQSTLLNTEH------------YGCVIDLL 363

Query: 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLIL 308
            ++  + +ALNL ++M    F   ++   S+L AC     + +G  V   +L  + +   
Sbjct: 364 GRSGQLQKALNLIEKMP---FQPTRAIWGSLLGACRVHTNVHVGEFVAQKLLDIEPENAG 420

Query: 309 NNALL-DMYCKCGSLEDAMSVFSRMIQKDVI-----SWSTMISGLAQNGYSQEALKLFES 362
           N  +L ++Y   G  +D   V   M++K VI     SW  ++  +    +S E     + 
Sbjct: 421 NYVILSNIYAAAGMWKDVFRVRKLMLKKTVIKEPGRSW-MILDKVIHTFHSCERFHPRKE 479

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVED 390
              ++IK  Y+ I         AGFV D
Sbjct: 480 DINAKIKEIYVAI-------KAAGFVPD 500


>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
          Length = 719

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 249/668 (37%), Positives = 380/668 (56%), Gaps = 77/668 (11%)

Query: 16  SQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSV 75
           ++AR+  L    P+ SC T     SSL+  + R  Y  D+  A++    MQ  G R +  
Sbjct: 89  NEARK--LFYETPIRSCITW----SSLISGYCR--YGCDV-EALELFWEMQYEGERPNQF 139

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           T+  +++ C     +E+ K +H H +   F+   F+V  L++M+ K   + EA+ LF+  
Sbjct: 140 TWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELA 199

Query: 136 PE-RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL--- 191
           P+ RN V WT M++ Y       KA+E    M  EG+  N FT+ ++L AC S+      
Sbjct: 200 PDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFG 259

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
            Q+H  I++ GF ++VFV SAL+D+Y+K G+L NA  +   M   D V WNS+I G  + 
Sbjct: 260 AQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQ 319

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNA 311
              +EAL+L++ M               LR              H+ + ++ +  ++NNA
Sbjct: 320 GLGEEALSLFRIMH--------------LR--------------HMKIDEFTYPSLVNNA 351

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+DMY K G  + A  VF +M  KDVISW+++++G   NG  +EAL+LF  M++  I P+
Sbjct: 352 LVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPD 411

Query: 372 YITIVGVLFACSHA--------GFVED----------------------------GWNHF 395
            I I  VL A  ++        G +ED                            G ++F
Sbjct: 412 QIVIAAVLSALDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRDYF 471

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN 455
           +SM++ YGI PG EHY+CMIDLLGR+GKL EA +L+++M  +PDA  W+ALL AC+VH N
Sbjct: 472 QSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGN 531

Query: 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE 515
            +L   AA  +  L+P++   Y+LLSN+Y+ + KW+E A+ R+ M+ RG++KEPGCSWIE
Sbjct: 532 VELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIE 591

Query: 516 VNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYH 575
           ++ ++H F   D SHP+  +I   +  ++  +   GY PD N+ L D++ E KE  + YH
Sbjct: 592 MSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYH 651

Query: 576 SEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDG 635
           SEKLA+ FGL+++  G  IRI KNLRICGDCHT  K  + + ++ +++RD   +HHF++G
Sbjct: 652 SEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREG 711

Query: 636 NCSCGDYW 643
            CSC DYW
Sbjct: 712 ACSCSDYW 719



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 120/396 (30%), Positives = 206/396 (52%), Gaps = 24/396 (6%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N ++  +     L EA+ LF + P R+ ++W+++IS YC    + +ALEL   M  EG R
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 173 PNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           PN FT+ +VLR C   ++L   +Q+H   IK  F+S+ FV + L+D+YAK   +  AE +
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYL 195

Query: 230 FNEMP-TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           F   P  R+ V+W +++ G++QN D  +A+  ++ M+  G   +Q T  S+L AC  ++ 
Sbjct: 196 FELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISA 255

Query: 289 LELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
              G QVH  +++  +  ++ + +AL+DMY KCG L +A  +   M   D +SW++MI G
Sbjct: 256 CGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVG 315

Query: 347 LAQNGYSQEALKLFESMKVSRIKPN---YITIVGVLFACSHA--GFVEDGWNHFKSMKKF 401
             + G  +EAL LF  M +  +K +   Y ++V       +A  G+ +  ++ F+ M   
Sbjct: 316 CVRQGLGEEALSLFRIMHLRHMKIDEFTYPSLVNNALVDMYAKRGYFDYAFDVFEKM--- 372

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE---MPYEPDAVTWRALLGACKVHRNTDL 458
              D     ++ ++      G  +EA++L  E   M   PD +   A+L A      +  
Sbjct: 373 --TDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSALDNSLVSMY 430

Query: 459 AICA----AKKILN-LDPQDPGTYILLSNIYANSQK 489
           A C     A K+ + ++ QD  T+  L   YA + +
Sbjct: 431 AKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGR 466



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 3/146 (2%)

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           D D    N ++  Y   G L +A  +F     +  I+WS++ISG  + G   EAL+LF  
Sbjct: 69  DRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWE 128

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRA 421
           M+    +PN  T   VL  CS    +E G   H  ++K  +  D      + ++D+  + 
Sbjct: 129 MQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQF--DSNAFVVTGLVDMYAKC 186

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALL 447
             + EA  L    P + + V W A++
Sbjct: 187 KCILEAEYLFELAPDKRNHVLWTAMV 212


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 264/730 (36%), Positives = 393/730 (53%), Gaps = 109/730 (14%)

Query: 9   LKWTKPSSQARQ----FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPR-AMKAMH 63
           LK   PS ++R     F L +  P A+   +   +S       R   Q + P  A     
Sbjct: 149 LKLMAPSRKSRSVNKGFLLLMRYPQANTWKMPAKASR------RAYIQTNSPHFAFTLYK 202

Query: 64  AMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM----- 118
           +M  + + AD+ TY  LI+ C  R +  EAK VHNHVL  GF+ + ++ N L+N      
Sbjct: 203 SMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCS 262

Query: 119 --------------------------HVKFSLLEEAQVLFDQMPERNV------------ 140
                                     +++   +EEA+ ++ QMPER++            
Sbjct: 263 NMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGM 322

Query: 141 -------------------VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
                              V+W+ +I+ +   +M ++A+   + M + GV  +     + 
Sbjct: 323 RGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSA 382

Query: 182 LRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR-------------- 224
           L AC +L+++   + +H   +K+G ES + +++ALI +Y+K G++               
Sbjct: 383 LSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDL 442

Query: 225 -----------------NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
                            NA+ +F+ MP +D+V W+S+I G+AQN   DE L L++ M+ +
Sbjct: 443 ISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMS 502

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDA 325
           GF  D++TL SV+ AC  LA LE G  VH ++ +     ++IL   L+DMY KCG +E A
Sbjct: 503 GFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETA 562

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
           + VF  MI+K + +W+ +I GLA NG  + +L +F +MK   + PN IT +GVL AC H 
Sbjct: 563 LEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHM 622

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G V++G +HF SM   + I P  +HY CM+DLLGRAGKLQEA +L++ MP  PD  TW A
Sbjct: 623 GLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGA 682

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LLGACK H ++++     +K++ L P   G ++LLSNIYA+  KWD+V E+R  M    +
Sbjct: 683 LLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRV 742

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            K PGCS IE N  IH F   D +HP +D I   L  +  KL   GY PD N VL D++ 
Sbjct: 743 LKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDE 802

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           E+KE ++  HSEKLAI FGL++++    IRI KNLRIC DCHT AKL +K   + IV+RD
Sbjct: 803 EEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIVVRD 862

Query: 626 PIRYHHFQDG 635
             R+HHF+ G
Sbjct: 863 RHRFHHFEQG 872


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/595 (39%), Positives = 361/595 (60%), Gaps = 10/595 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+K+ ++M+  G+   +      +  C +   +   +  H   +  G + +  + N LL 
Sbjct: 188 AVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLA 247

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN-DKALELLIFMLREGVRPNMF 176
           ++ + S L E Q +F  M ER+ VSW T+I A  D+  +  +A+E+ + M+R G  PN  
Sbjct: 248 LYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRV 307

Query: 177 TYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T+  +L    SL   +   Q+H  I+K   + D  + +AL+  Y K GE+ N E +F+ M
Sbjct: 308 TFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRM 367

Query: 234 PTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
             R D V WNS+I G+  N  + +A++L   M + G   D  T  +VL AC  +A LE G
Sbjct: 368 SERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECG 427

Query: 293 TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
            +VH   ++   + D+++ +AL+DMY KCG ++ A   F+ M  +++ SW++MISG A++
Sbjct: 428 MEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARH 487

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
           G+   AL+LF  MK+S   P++IT VGVL ACSH G V++G+ +FKSM + YG+ P  EH
Sbjct: 488 GHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEH 547

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC--KVHRNTDLAICAAKKILN 468
           YSCM+DLLGRAG+L +    I++MP +P+ + WR +LGAC     R T+L   AA+ + N
Sbjct: 548 YSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFN 607

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           +DPQ+   Y+LLSN+YA+  KW+++A  R+ MR   + KE GCSW+ +   +H F   D+
Sbjct: 608 MDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDN 667

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
           SHP+   I   LK L +K+   GY P   + L DLE E KE+ + YHSEKLA+ F +++ 
Sbjct: 668 SHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEELLSYHSEKLAVAF-VLTR 726

Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             G  IRI KNLR+CGDCH+  K  +K+ +++IV+RD  R+HHF+DG CSC DYW
Sbjct: 727 NSGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFEDGKCSCRDYW 781



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 194/366 (53%), Gaps = 9/366 (2%)

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
           +A L H +VL  GF+ + FL N L+N++V+      A+ LFD+MP+RN V+W  +IS Y 
Sbjct: 18  DANLFHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYT 77

Query: 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL----RQLHCGIIKVGF-ESD 206
              M + A  +L  M+ EG  PN F + + +RAC   ++     RQ+H   I+ G  ++ 
Sbjct: 78  QNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAK 137

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
           V V + LI++YAK G++ +A  VF  M  +D V WNS+I G  QN   ++A+  Y  M++
Sbjct: 138 VAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRK 197

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLED 324
            G       L S L +C  L  + LG Q H   +K   D D+ ++N LL +Y +   L +
Sbjct: 198 TGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAE 257

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYS-QEALKLFESMKVSRIKPNYITIVGVLFACS 383
              VFS M+++D +SW+T+I  LA +G S  EA+++F  M  +   PN +T + +L   S
Sbjct: 258 CQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVS 317

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
                +   +   ++   Y +       + ++   G++G+++   ++   M    D V+W
Sbjct: 318 SLSTSKLS-HQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSW 376

Query: 444 RALLGA 449
            +++  
Sbjct: 377 NSMISG 382



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 21/205 (10%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           L +AM  +  M   G R D  T+A ++  C     +E    VH   +    E +  + + 
Sbjct: 389 LCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSA 448

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           L++M+ K   ++ A   F+ MP RN+ SW +MIS Y      D AL L   M   G  P+
Sbjct: 449 LVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPD 508

Query: 175 MFTYSAVLRACDSLIILRQLHCGIIKVGFE-----SDVFV-------RSALIDIYAKLGE 222
             T+  VL AC         H G++  GFE     ++V+         S ++D+  + GE
Sbjct: 509 HITFVGVLSACS--------HIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGE 560

Query: 223 LRNAECVFNEMPTR-DLVVWNSIIG 246
           L   E   N+MP + ++++W +++G
Sbjct: 561 LDKIENFINKMPIKPNILIWRTVLG 585


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/574 (40%), Positives = 358/574 (62%), Gaps = 9/574 (1%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           TYA +IK C     +  A+ +H+ VL  GF     ++  L + + K   L +A  +F   
Sbjct: 304 TYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMT 363

Query: 136 P-ERNVVSWTTMISAYCDAKMNDKALELLIF--MLREGVRPNMFTYSAVLRACDSLIILR 192
              RNVVSWT +IS     +  D  L +++F  M  + V PN FTYSA+L+A  S I+  
Sbjct: 364 TGSRNVVSWTAIISGC--IQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLS-ILPP 420

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           Q+H  +IK  ++   FV +AL+  Y+K G   +A  +F  +  +D+V W++++   AQ  
Sbjct: 421 QIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAG 480

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACT-GLALLELGTQVHVHVLKYD-HDLI-LN 309
           D + A  L+ +M   G   ++ T++SV+ AC    A ++ G Q H   +KY  HD I ++
Sbjct: 481 DCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVS 540

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
           +AL+ MY + G+++ A  VF R   +D++SW++MISG AQ+GYS +A++ F  M+ S I+
Sbjct: 541 SALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQ 600

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
            + +T + V+  C+H G V +G  +F SM + + I+P  EHY+CM+DL  RAGKL E + 
Sbjct: 601 MDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMS 660

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489
           LI +MP+   A+ WR LLGAC+VH+N +L   +A K+L+L+P D  TY+LLSNIYA + K
Sbjct: 661 LIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGK 720

Query: 490 WDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549
           W E  EVRK M  R + KE GCSWI++  ++H+F   D SHP  D+I K LK +I +L  
Sbjct: 721 WKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQ 780

Query: 550 VGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
            GY+P+T++VL D+  +QKE  +  HSE+LA+ FGL++   G  ++I KNLR+CGDCH  
Sbjct: 781 DGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMV 840

Query: 610 AKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            K+ + +E++ I++RD  R+HHF  G CSCGD+W
Sbjct: 841 MKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 127/405 (31%), Positives = 210/405 (51%), Gaps = 17/405 (4%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  G+  +  T+A ++    ++ A++  + VH   +  G     F+ N L+NM+ K  L
Sbjct: 192 MRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGL 251

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL-IFMLREGVRPNMF--TYSAV 181
           +E+A+ +F+ M  R++VSW T+++     ++N+  LE L +F         M   TY+ V
Sbjct: 252 VEDAKSVFNWMETRDMVSWNTLMAGL---QLNECELEALQLFHESRATMGKMTQSTYATV 308

Query: 182 LRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN-EMPTRD 237
           ++ C     L + RQLH  ++K GF     V +AL D Y+K GEL +A  +F+    +R+
Sbjct: 309 IKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRN 368

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           +V W +II G  QN D+  A+ L+ RM+      ++ T +++L+A    +L  L  Q+H 
Sbjct: 369 VVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA----SLSILPPQIHA 424

Query: 298 HVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
            V+K  Y H   +  ALL  Y K GS EDA+S+F  + QKDV++WS M+S  AQ G  + 
Sbjct: 425 QVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEG 484

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           A  LF  M +  IKPN  TI  V+ AC+      D    F ++   Y         S ++
Sbjct: 485 ATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALV 544

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            +  R G +  A +++ E   + D V+W +++     H  +  AI
Sbjct: 545 SMYSRKGNIDSA-QIVFERQTDRDLVSWNSMISGYAQHGYSMKAI 588



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 126/393 (32%), Positives = 205/393 (52%), Gaps = 27/393 (6%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE-PETFLVNILLNMHVKFSLLEE 127
           GV  DS T + ++K C +       + +H   +  G +  E      L++M++K   + E
Sbjct: 94  GVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCE 153

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
              +F+ MP++NVV+WT++++    A+M+ + + L   M  EG+ PN FT+++VL A  S
Sbjct: 154 GIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVAS 213

Query: 188 ---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
              L + +++H   +K G  S VFV ++L+++YAK G + +A+ VFN M TRD+V WN++
Sbjct: 214 QGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTL 273

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
           + G   N    EAL L+   +       QST  +V++ C  L  L L  Q+H  VLK+  
Sbjct: 274 MAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGF 333

Query: 305 DLILN--NALLDMYCKCGSLEDAMSVFSRMI-QKDVISWSTMISGLAQNGYSQEALKLFE 361
            L  N   AL D Y KCG L DA+++FS     ++V+SW+ +ISG  QNG    A+ LF 
Sbjct: 334 HLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFS 393

Query: 362 SMKVSRIKPNYITIVGVLFAC-------SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414
            M+  R+ PN  T   +L A         HA  ++  + H      F G        + +
Sbjct: 394 RMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHI----PFVG--------TAL 441

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           +    + G  ++A+  I +M  + D V W A+L
Sbjct: 442 LASYSKFGSTEDALS-IFKMIEQKDVVAWSAML 473



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 160/327 (48%), Gaps = 14/327 (4%)

Query: 29  VASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARH 88
           + S  T +RN  S     +      D+P A+     M+   V  +  TY+ ++K  L+  
Sbjct: 359 IFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSIL 418

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
             +    +H  V+   ++   F+   LL  + KF   E+A  +F  + +++VV+W+ M+S
Sbjct: 419 PPQ----IHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLS 474

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC----DSLIILRQLHCGIIKVGFE 204
            +  A   + A  L   M  +G++PN FT S+V+ AC      +   RQ H   IK  + 
Sbjct: 475 CHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYH 534

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
             + V SAL+ +Y++ G + +A+ VF     RDLV WNS+I G+AQ+    +A+  +++M
Sbjct: 535 DAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQM 594

Query: 265 KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCG 320
           + +G   D  T  +V+  CT   L+  G Q    +++ DH +         ++D+Y + G
Sbjct: 595 EASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVR-DHKINPTMEHYACMVDLYSRAG 653

Query: 321 SLEDAMSVFSRM-IQKDVISWSTMISG 346
            L++ MS+   M      + W T++  
Sbjct: 654 KLDETMSLIRDMPFPAGAMVWRTLLGA 680



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 230 FNEMPTRDLVVW-NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
            +E+P RD  V  N ++  +A+   V E L+ +   +R G   D +TL+ VL+AC  +  
Sbjct: 55  LDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPD 114

Query: 289 LELGTQVHVHVLKYDHD---LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
             LG Q+H   +K  HD   +    +L+DMY KCGS+ + + VF  M +K+V++W+++++
Sbjct: 115 RVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLT 174

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGI 404
           G A      E + LF  M+   I PN  T   VL A +  G ++ G   H +S+K  +G 
Sbjct: 175 GCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVK--FGC 232

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
                  + ++++  + G +++A  + + M    D V+W  L+   +++
Sbjct: 233 RSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETR-DMVSWNTLMAGLQLN 280


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/579 (38%), Positives = 348/579 (60%), Gaps = 5/579 (0%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V  +    A  I  C  R  VEE +  H  +L  GF    ++ N L++M+ K S++++A 
Sbjct: 129 VSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAM 188

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            +++++P  ++V++ +++S+  +     + LE+L  M+ E V+ +  T+      C SL 
Sbjct: 189 GVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLK 248

Query: 190 ILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            LR    +H  ++    E D +V SA+I++Y K G+   A  VF+ + +R++V+W +++ 
Sbjct: 249 DLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMA 308

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDH 304
              QN   +EALNL+ +M++    +++ T   +L AC GL+    G+ +H H  K  + H
Sbjct: 309 SCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKH 368

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
            +++ NAL++MY K G +E A  VFS M+ +D+I+W+ MI G + +G  ++AL +F+ M 
Sbjct: 369 HVMVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDML 428

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
            +   PNY+T  GVL AC H G V++G+ +   + K +G+ PG EHY+C++ LL + G+L
Sbjct: 429 AAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQL 488

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484
            EA   +   P + D V WR LL AC VH+N  L    A+ +L +DP D GTY LLSNIY
Sbjct: 489 NEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIY 548

Query: 485 ANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLI 544
           A  ++WD V +VRK MR + I KEPG SWIE+    H F   D+ HP   +  + +K L+
Sbjct: 549 AKEKRWDGVVKVRKLMRDKKIKKEPGVSWIEIGNVTHIFTSEDNKHPDYGQTYQKVKELL 608

Query: 545 QKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICG 604
             +  +GY PD   VL D+E EQKE  + YHSEKLAI +GL+ L    +I + KNLRIC 
Sbjct: 609 AMIKPLGYTPDIGAVLHDVEDEQKEYYLSYHSEKLAIAYGLLKLPSEASILVIKNLRICD 668

Query: 605 DCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           DCH+  +L +K+ N+ IV+RD  R+HHF+DG CSC DYW
Sbjct: 669 DCHSAVRLISKVTNRVIVVRDANRFHHFRDGRCSCLDYW 707



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 198/381 (51%), Gaps = 18/381 (4%)

Query: 79  ELIKCCLARHAVEEAKLVHNH--VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           +L+K       ++  K +H+H  V S   E     VN L+N + K + +  A  LFD+MP
Sbjct: 34  KLLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMP 93

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYS-AVLRACDSLIIL--R 192
           ERNVVSW+ +++ Y     + K + LL  M+ EG V PN +  + A+   CD   +   R
Sbjct: 94  ERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGR 153

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           Q H  ++K GF    +VR+AL+ +Y+K   +++A  V+NE+P  D+V +NSI+    +N 
Sbjct: 154 QCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENG 213

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNN 310
            + E L + + M       D+ T  +    C  L  L LG  VH  +L  D   D  +++
Sbjct: 214 YLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSS 273

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           A+++MY KCG    A  VF  +  ++V+ W+ +++   QNG  +EAL LF  M+   +K 
Sbjct: 274 AIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKS 333

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY----SCMIDLLGRAGKLQE 426
           N  T   +L AC+      +G     S+   +    G +H+    + +I++  ++G ++ 
Sbjct: 334 NEFTYAVLLNACAGLSARRNG-----SLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEA 388

Query: 427 AVKLIHEMPYEPDAVTWRALL 447
           A K+  +M +  D +TW A++
Sbjct: 389 AKKVFSDMMHR-DIITWNAMI 408



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 161/315 (51%), Gaps = 12/315 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           +S+L       Y R+    ++ + +M    V+ D VT+      C +   +     VH  
Sbjct: 203 NSILSSLVENGYLRE---GLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGK 259

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           +L+   E + ++ + ++NM+ K      A+ +FD +  RNVV WT ++++       ++A
Sbjct: 260 MLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEA 319

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDI 216
           L L   M +E V+ N FTY+ +L AC  L   R    LH    K GF+  V V +ALI++
Sbjct: 320 LNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINM 379

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           YAK G++  A+ VF++M  RD++ WN++I GF+ +    +AL +++ M  A    +  T 
Sbjct: 380 YAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTF 439

Query: 277 TSVLRACTGLALLELGTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRM- 332
           T VL AC  L L++ G     H++K       L     ++ +  K G L +A + F R  
Sbjct: 440 TGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARN-FMRTA 498

Query: 333 -IQKDVISWSTMISG 346
            ++ DV++W T+++ 
Sbjct: 499 PVKWDVVAWRTLLNA 513


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/611 (39%), Positives = 352/611 (57%), Gaps = 36/611 (5%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           GV  +S T+  L+K C    +  E K +H HVL  GF  + F+   L+NM+ +   +  A
Sbjct: 124 GVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNA 183

Query: 129 QVLFDQ-------------------------------MPERNVVSWTTMISAYCDAKMND 157
           Q++FDQ                               MP ++VVSW  MI+ Y     + 
Sbjct: 184 QLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSK 243

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALI 214
           +AL L   M +  V PN  T  +VL AC   ++L +   +   I   G  S++ + +ALI
Sbjct: 244 EALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALI 303

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           D+Y+K G+L+ A  +F++M  RD++ WN +IGG+       EAL L++ M  +G    + 
Sbjct: 304 DMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEI 363

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           T  S+L +C  L  ++LG  +H ++ K        L+ +L+D+Y KCG++  A  VF  M
Sbjct: 364 TFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGM 423

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
             K + SW+ MI GLA +G + +A +LF  M    I+PN IT VG+L AC HAG V+ G 
Sbjct: 424 KIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQ 483

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
             F SM + Y I P  +HY CMIDLLGRAG  +EA  L+  M  +PD   W +LLGAC+ 
Sbjct: 484 QFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRD 543

Query: 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCS 512
           H   +L    A+++  L+P +PG Y+LLSNIYA + KWD+VA +R  +  RG+ K PGC+
Sbjct: 544 HGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCT 603

Query: 513 WIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSI 572
            IEV+  +H F V D  HPQ + I + L+ + ++L   G+  DT+ VL D++ E KE ++
Sbjct: 604 TIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGAL 663

Query: 573 QYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF 632
            +HSEKLAI FGL+S   G  IRI KNLR+C +CH+  KL +K+ N+ I+ RD  R+HHF
Sbjct: 664 SHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHF 723

Query: 633 QDGNCSCGDYW 643
           +DG+CSC DYW
Sbjct: 724 KDGSCSCNDYW 734



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 128/420 (30%), Positives = 208/420 (49%), Gaps = 46/420 (10%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQMPE 137
           L KC     ++   K +H H++  G     F ++ L+      +   +  A  LF+ + E
Sbjct: 36  LSKC----QSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEE 91

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQL 194
            N+  W +MI     +     AL   + M+  GV PN +T+  +L++C  L      +Q+
Sbjct: 92  PNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQI 151

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV------------------------- 229
           H  ++K+GF SDVF+ ++LI++YA+ GE+ NA+ V                         
Sbjct: 152 HAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYM 211

Query: 230 ------FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
                 F+EMP +D+V WN++I G+AQ     EAL L++ M++A    ++ST+ SVL AC
Sbjct: 212 DRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSAC 271

Query: 284 TGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
                L+LG  +   +       +L L NAL+DMY KCG L+ A  +F  M+++DVISW+
Sbjct: 272 AQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWN 331

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKK 400
            MI G       +EAL LF  M  S ++P  IT + +L +C+H G ++ G W H    K 
Sbjct: 332 VMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKN 391

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           F  +       + +IDL  + G +  A ++   M  +  A +W A++    +H   D A 
Sbjct: 392 FNSVS--TSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLA-SWNAMICGLAMHGQADKAF 448



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 154/304 (50%), Gaps = 37/304 (12%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRDL 238
           +L  C S+   +Q+H  IIK G  + +F  S LI+  A  + G++  A  +FN +   +L
Sbjct: 35  LLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNL 94

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
            +WNS+I G + +     AL  + RM  +G   +  T   +L++C  LA    G Q+H H
Sbjct: 95  FIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAH 154

Query: 299 VLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSR------------------------- 331
           VLK  +  D+ ++ +L++MY + G + +A  VF +                         
Sbjct: 155 VLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRA 214

Query: 332 ------MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
                 M  KDV+SW+ MI+G AQ G S+EAL LFE M+ + + PN  TIV VL AC+ +
Sbjct: 215 RQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQS 274

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
             ++ G N  +S  +  G+    +  + +ID+  + G LQ A +L  +M  E D ++W  
Sbjct: 275 NALDLG-NSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDM-LERDVISWNV 332

Query: 446 LLGA 449
           ++G 
Sbjct: 333 MIGG 336


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/592 (39%), Positives = 359/592 (60%), Gaps = 6/592 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++ +  MQ  G+  +S T   ++       A+   K +H + +   F+    +   LL+
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLD 253

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM-LREGVRPNMF 176
           M+ K   L  A+ +FD M  RN VSW+ MI  Y  +    +ALEL   M L++ + P   
Sbjct: 254 MYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPV 313

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T  +VLRAC  L  L   R+LHC IIK+G   D+ + + L+ +YAK G + +A   F+EM
Sbjct: 314 TLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEM 373

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +D V +++I+ G  QN +   AL++++ M+ +G   D +T+  VL AC+ LA L+ G 
Sbjct: 374 NPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGF 433

Query: 294 QVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
             H +++   +  D ++ NAL+DMY KCG +  A  VF+RM + D++SW+ MI G   +G
Sbjct: 434 CSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHG 493

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
              EAL LF  +    +KP+ IT + +L +CSH+G V +G   F +M + + I P  EH 
Sbjct: 494 LGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHC 553

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
            CM+D+LGRAG + EA   I  MP+EPD   W ALL AC++H+N +L    +KKI +L P
Sbjct: 554 ICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGP 613

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
           +  G ++LLSNIY+ + +WD+ A +R T +  G+ K PGCSWIE+N  +HAF   D SH 
Sbjct: 614 ESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHL 673

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
           Q+ +IN+ L+ L+ ++  +GY  + ++V QD+E E+KE  + YHSEKLAI FG+++L  G
Sbjct: 674 QLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAG 733

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + I + KNLR+CGDCHT  K    +  + I +RD  R+HHF++G C+CGD+W
Sbjct: 734 RPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 141/442 (31%), Positives = 227/442 (51%), Gaps = 20/442 (4%)

Query: 19  RQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYA 78
           R F     P V   N I R           + +      A+   H+M   GVR +  TY 
Sbjct: 64  RLFDEIPNPSVILWNQIIR----------AYAWNGPFDGAIDLYHSMLHLGVRPNKYTYP 113

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
            ++K C    A+E+   +H+H    G E + F+   L++ + K  +L EAQ LF  M  R
Sbjct: 114 FVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR 173

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLH 195
           +VV+W  MI+      + D A++L++ M  EG+ PN  T   VL        L   + LH
Sbjct: 174 DVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALH 233

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
              ++  F++ V V + L+D+YAK   L  A  +F+ M  R+ V W+++IGG+  +  + 
Sbjct: 234 GYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMK 293

Query: 256 EALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNAL 312
           EAL L+ +M  +        TL SVLRAC  L  L  G ++H +++K     D++L N L
Sbjct: 294 EALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTL 353

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           L MY KCG ++DA+  F  M  KD +S+S ++SG  QNG +  AL +F  M++S I P+ 
Sbjct: 354 LSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDL 413

Query: 373 ITIVGVLFACSHAGFVEDGW-NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            T++GVL ACSH   ++ G+ +H   + + +  D      + +ID+  + GK+  A ++ 
Sbjct: 414 TTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDT--LICNALIDMYSKCGKISFAREVF 471

Query: 432 HEMPYEPDAVTWRALLGACKVH 453
           + M    D V+W A++    +H
Sbjct: 472 NRMDRH-DIVSWNAMIIGYGIH 492



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/422 (29%), Positives = 216/422 (51%), Gaps = 15/422 (3%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
            Y  L++ C+   ++ EAK +H H L      ++ +++ L  +++  + +  A+ LFD++
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEI 69

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR--- 192
           P  +V+ W  +I AY      D A++L   ML  GVRPN +TY  VL+AC  L+ +    
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGV 129

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           ++H      G ESDVFV +AL+D YAK G L  A+ +F+ M  RD+V WN++I G +   
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNN 310
             D+A+ L  +M+  G   + ST+  VL        L  G  +H + ++  +D+ +++  
Sbjct: 190 LCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGT 249

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV-SRIK 369
            LLDMY KC  L  A  +F  M  ++ +SWS MI G   +   +EAL+LF+ M +   + 
Sbjct: 250 GLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMD 309

Query: 370 PNYITIVGVLFACSHAGFVEDGWN---HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
           P  +T+  VL AC+    +  G     +   +     I  G      ++ +  + G + +
Sbjct: 310 PTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNT----LLSMYAKCGVIDD 365

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           A++   EM    D+V++ A++  C  + N  +A+ +  +++ L   DP    +L  + A 
Sbjct: 366 AIRFFDEMN-PKDSVSFSAIVSGCVQNGNAAVAL-SIFRMMQLSGIDPDLTTMLGVLPAC 423

Query: 487 SQ 488
           S 
Sbjct: 424 SH 425


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/539 (43%), Positives = 341/539 (63%), Gaps = 22/539 (4%)

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           ++  + +   L EA++LFD+MP RNVVSWTTMI+ Y   +  D A +L   M  +    N
Sbjct: 259 MIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----N 314

Query: 175 MFTYSAVLRACDSLIILRQLHCGIIKVGFE-------SDVFVRSALIDIYAKLGELRNAE 227
             +++A+L+           +CG +    E         V   +A+I  + + GE+  A 
Sbjct: 315 EVSWTAMLKG--------YTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKAR 366

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            VF++M  +D   W+++I  + +     +AL L++ M+R G   +  +L SVL  C GLA
Sbjct: 367 QVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLA 426

Query: 288 LLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
            L+ G ++H  +++  +D D+ + + LL MY KCG+L  A  VF R   KDV+ W+++I+
Sbjct: 427 NLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIIT 486

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           G AQ+G   EAL++F  M  S I P+ +T VGVL ACS+ G V+ G   F SM+  Y ++
Sbjct: 487 GYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVE 546

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
              EHY+CM+DLLGRAGKL EA+ LI +MP E DA+ W ALLGAC+ H   DLA  AAKK
Sbjct: 547 QKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKK 606

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
           +L L+P++ G +ILLSNIYA+  +WD+VAE+R+ MR R ++K PGCSWI V K++H F  
Sbjct: 607 LLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTG 666

Query: 526 ADSS-HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFG 584
            DSS HP+  +IN+ L+ L   L   GY PD ++VL D++ E+K  S++YHSEKLA+ +G
Sbjct: 667 GDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYG 726

Query: 585 LMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L+ +  G  IR+ KNLR+CGDCH   KL AK+  + I++RD  R+HHF+DG+CSC DYW
Sbjct: 727 LLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 181/354 (51%), Gaps = 25/354 (7%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           E  T   N L++ ++   ++ EA+ +FD+MPERNVVSWT M+  Y    M  +A E L +
Sbjct: 157 ERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEA-ETLFW 215

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILRQLH----CGIIKVGFESDVFVRSALIDIYAKLG 221
            + E    N+ +++ +L       +L++      C +  +  E DV  R+ +I  Y ++G
Sbjct: 216 QMPE---KNVVSWTVMLGG-----LLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVG 267

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
            L  A  +F+EMP R++V W ++I G+ QN  VD A  L++ M       ++ + T++L+
Sbjct: 268 RLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPE----KNEVSWTAMLK 323

Query: 282 ACTGLALLELGTQV-HVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
             T    L+  +++ +   +K    ++  NA++  + + G +  A  VF +M +KD  +W
Sbjct: 324 GYTNCGRLDEASELFNAMPIK---SVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTW 380

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMK 399
           S MI    + G   +AL+LF  M+   I+PN+ +++ VL  C+    ++ G   H + ++
Sbjct: 381 SAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVR 440

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             + +D      S ++ +  + G L +A ++      + D V W +++     H
Sbjct: 441 SQFDLDV--YVASVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSIITGYAQH 491



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 162/352 (46%), Gaps = 59/352 (16%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N L+  + +   +E+A+V+FD+M ++N++SW ++++ Y   K   +A  +   M      
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSER--- 158

Query: 173 PNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
            N  +++ ++    +  ++ +      ++  E +V   +A++  Y K G +  AE +F +
Sbjct: 159 -NTISWNGLVSGYINNGMINEAREVFDRMP-ERNVVSWTAMVRGYVKEGMISEAETLFWQ 216

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           MP +++V W  ++GG  Q   +DEA  L+  M                            
Sbjct: 217 MPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMP--------------------------- 249

Query: 293 TQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
                     + D++    ++  YC+ G L +A  +F  M +++V+SW+TMI+G  QN  
Sbjct: 250 ----------EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQ 299

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
              A KLFE M     + N ++   +L   ++ G +++    F +M       P +   +
Sbjct: 300 VDIARKLFEVMP----EKNEVSWTAMLKGYTNCGRLDEASELFNAM-------PIKSVVA 348

Query: 413 C--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           C  MI   G+ G++ +A ++  +M  E D  TW A++   KV+    L + A
Sbjct: 349 CNAMILCFGQNGEVPKARQVFDQM-REKDEGTWSAMI---KVYERKGLELDA 396



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 132/303 (43%), Gaps = 56/303 (18%)

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
           +  R++LI  Y++LG++  A  VF+EM  ++++ WNSI+ G+ QN    EA N++ +M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMS- 156

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAM 326
                                               + + I  N L+  Y   G + +A 
Sbjct: 157 ------------------------------------ERNTISWNGLVSGYINNGMINEAR 180

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            VF RM +++V+SW+ M+ G  + G   EA  LF  M    +    + + G+L      G
Sbjct: 181 EVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLL----QEG 236

Query: 387 FVEDGWNHFKSMKKFYGIDPGRE--HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
            +++    F  M       P ++    + MI    + G+L EA  L  EMP   + V+W 
Sbjct: 237 RIDEACRLFDMM-------PEKDVVTRTNMIGGYCQVGRLVEARMLFDEMP-RRNVVSWT 288

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQ-DPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503
            ++     ++  D+    A+K+  + P+ +  ++  +   Y N  + DE +E+   M  +
Sbjct: 289 TMITGYVQNQQVDI----ARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIK 344

Query: 504 GIT 506
            + 
Sbjct: 345 SVV 347



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 100/208 (48%), Gaps = 11/208 (5%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    MQ  G+R +  +   ++  C     ++  + +H  ++   F+ + ++ ++LL+
Sbjct: 396 ALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLS 455

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M++K   L +A+ +FD+   ++VV W ++I+ Y    +  +AL +   M   G+ P+  T
Sbjct: 456 MYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVT 515

Query: 178 YSAVLRACD-------SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +  VL AC         L I   +     K   E  +   + ++D+  + G+L  A  + 
Sbjct: 516 FVGVLSACSYTGNVKKGLEIFNSMET---KYQVEQKIEHYACMVDLLGRAGKLNEAMDLI 572

Query: 231 NEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
            +MP   D ++W +++G    +  +D A
Sbjct: 573 EKMPMEADAIIWGALLGACRTHMKLDLA 600


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/539 (43%), Positives = 341/539 (63%), Gaps = 22/539 (4%)

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           ++  + +   L EA++LFD+MP RNVVSWTTMI+ Y   +  D A +L   M  +    N
Sbjct: 259 MIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----N 314

Query: 175 MFTYSAVLRACDSLIILRQLHCGIIKVGFE-------SDVFVRSALIDIYAKLGELRNAE 227
             +++A+L+           +CG +    E         V   +A+I  + + GE+  A 
Sbjct: 315 EVSWTAMLKG--------YTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKAR 366

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            VF++M  +D   W+++I  + +     +AL L++ M+R G   +  +L SVL  C GLA
Sbjct: 367 QVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLA 426

Query: 288 LLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
            L+ G ++H  +++  +D D+ + + LL MY KCG+L  A  VF R   KDV+ W+++I+
Sbjct: 427 NLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIIT 486

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           G AQ+G   EAL++F  M  S I P+ +T VGVL ACS+ G V+ G   F SM+  Y ++
Sbjct: 487 GYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVE 546

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
              EHY+CM+DLLGRAGKL EA+ LI +MP E DA+ W ALLGAC+ H   DLA  AAKK
Sbjct: 547 QKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKK 606

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
           +L L+P++ G +ILLSNIYA+  +WD+VAE+R+ MR R ++K PGCSWI V K++H F  
Sbjct: 607 LLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTG 666

Query: 526 ADSS-HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFG 584
            DSS HP+  +IN+ L+ L   L   GY PD ++VL D++ E+K  S++YHSEKLA+ +G
Sbjct: 667 GDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYG 726

Query: 585 LMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L+ +  G  IR+ KNLR+CGDCH   KL AK+  + I++RD  R+HHF+DG+CSC DYW
Sbjct: 727 LLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 181/354 (51%), Gaps = 25/354 (7%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           E  T   N L++ ++   ++ EA+ +FD+MPERNVVSWT M+  Y    M  +A E L +
Sbjct: 157 ERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEA-ETLFW 215

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILRQLH----CGIIKVGFESDVFVRSALIDIYAKLG 221
            + E    N+ +++ +L       +L++      C +  +  E DV  R+ +I  Y ++G
Sbjct: 216 QMPE---KNVVSWTVMLGG-----LLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVG 267

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
            L  A  +F+EMP R++V W ++I G+ QN  VD A  L++ M       ++ + T++L+
Sbjct: 268 RLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPE----KNEVSWTAMLK 323

Query: 282 ACTGLALLELGTQV-HVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
             T    L+  +++ +   +K    ++  NA++  + + G +  A  VF +M +KD  +W
Sbjct: 324 GYTNCGRLDEASELFNAMPIK---SVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTW 380

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMK 399
           S MI    + G   +AL+LF  M+   I+PN+ +++ VL  C+    ++ G   H + ++
Sbjct: 381 SAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVR 440

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             + +D      S ++ +  + G L +A ++      + D V W +++     H
Sbjct: 441 SQFDLDV--YVASVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSIITGYAQH 491



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 162/352 (46%), Gaps = 59/352 (16%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N L+  + +   +E+A+V+FD+M ++N++SW ++++ Y   K   +A  +   M      
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSER--- 158

Query: 173 PNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
            N  +++ ++    +  ++ +      ++  E +V   +A++  Y K G +  AE +F +
Sbjct: 159 -NTISWNGLVSGYINNGMINEAREVFDRMP-ERNVVSWTAMVRGYVKEGMISEAETLFWQ 216

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           MP +++V W  ++GG  Q   +DEA  L+  M                            
Sbjct: 217 MPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMP--------------------------- 249

Query: 293 TQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
                     + D++    ++  YC+ G L +A  +F  M +++V+SW+TMI+G  QN  
Sbjct: 250 ----------EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQ 299

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
              A KLFE M     + N ++   +L   ++ G +++    F +M       P +   +
Sbjct: 300 VDIARKLFEVMP----EKNEVSWTAMLKGYTNCGRLDEASELFNAM-------PIKSVVA 348

Query: 413 C--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           C  MI   G+ G++ +A ++  +M  E D  TW A++   KV+    L + A
Sbjct: 349 CNAMILCFGQNGEVPKARQVFDQM-REKDEGTWSAMI---KVYERKGLELDA 396



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 132/303 (43%), Gaps = 56/303 (18%)

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
           +  R++LI  Y++LG++  A  VF+EM  ++++ WNSI+ G+ QN    EA N++ +M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMS- 156

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAM 326
                                               + + I  N L+  Y   G + +A 
Sbjct: 157 ------------------------------------ERNTISWNGLVSGYINNGMINEAR 180

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            VF RM +++V+SW+ M+ G  + G   EA  LF  M    +    + + G+L      G
Sbjct: 181 EVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLL----QEG 236

Query: 387 FVEDGWNHFKSMKKFYGIDPGRE--HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
            +++    F  M       P ++    + MI    + G+L EA  L  EMP   + V+W 
Sbjct: 237 RIDEACRLFDMM-------PEKDVVTRTNMIGGYCQVGRLVEARMLFDEMP-RRNVVSWT 288

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQ-DPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503
            ++     ++  D+    A+K+  + P+ +  ++  +   Y N  + DE +E+   M  +
Sbjct: 289 TMITGYVQNQQVDI----ARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIK 344

Query: 504 GIT 506
            + 
Sbjct: 345 SVV 347



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 100/208 (48%), Gaps = 11/208 (5%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    MQ  G+R +  +   ++  C     ++  + +H  ++   F+ + ++ ++LL+
Sbjct: 396 ALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLS 455

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M++K   L +A+ +FD+   ++VV W ++I+ Y    +  +AL +   M   G+ P+  T
Sbjct: 456 MYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVT 515

Query: 178 YSAVLRACD-------SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +  VL AC         L I   +     K   E  +   + ++D+  + G+L  A  + 
Sbjct: 516 FVGVLSACSYTGNVKKGLEIFNSMET---KYQVEQKIEHYACMVDLLGRAGKLNEAMDLI 572

Query: 231 NEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
            +MP   D ++W +++G    +  +D A
Sbjct: 573 EKMPMEADAIIWGALLGACRTHMKLDLA 600


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/575 (39%), Positives = 346/575 (60%), Gaps = 39/575 (6%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R +  TY  L K C    AV+E + +H HV+  G   +  + +  ++M+  F  LE+A+ 
Sbjct: 129 RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARK 188

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           +F    E +VV W TMI  Y                              VL A   L  
Sbjct: 189 MF-YSGESDVVCWNTMIDGYLKC--------------------------GVLEAAKGLFA 221

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
              +           ++   + +I+  AK G L +A  +F+EM  RD + W+S++ G+  
Sbjct: 222 QMPV----------KNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYIS 271

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
                EAL ++++M+R      +  L+SVL AC+ +  ++ G  VH ++ +     D +L
Sbjct: 272 AGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVL 331

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
             ALLDMY KCG L+    VF  M ++++ +W+ MI GLA +G +++AL+LF  ++  R+
Sbjct: 332 GTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRM 391

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
           KPN IT+VGVL AC+HAGFV+ G   F++M++FYG+DP  EHY CM+DLLGR+G   EA 
Sbjct: 392 KPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAE 451

Query: 429 KLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
            LI+ MP +P+A  W ALLGAC++H N DLA    K +L L+PQ+ G Y+LLSNIYA   
Sbjct: 452 DLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVG 511

Query: 489 KWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLV 548
           ++D+V+++RK M+ RGI   PG S +++N  +H F + D SHPQ+ +I + LK + ++L 
Sbjct: 512 RFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQ 571

Query: 549 GVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHT 608
             G++PDT+ VL D++ E+KE ++ YHSEKLAI FGL++   GK I I KNLR+C DCH+
Sbjct: 572 MAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHS 631

Query: 609 FAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             KL +++ ++ I++RD +RYHHF++G CSC D+W
Sbjct: 632 ATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 149/344 (43%), Gaps = 70/344 (20%)

Query: 183 RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK--LGELRNAECVFNEMPTRDLVV 240
           ++  SL  L QLH  +++ G   D +V  AL+  YA         A  VF+ +P  ++ +
Sbjct: 41  KSITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFI 100

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           WN +I G  +N+ + +A+  Y RM       ++ T  ++ +AC+    ++ G Q+H HV+
Sbjct: 101 WNIVIKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIHGHVV 159

Query: 301 KY--------------------------------DHDLILNNALLDMYCKCGSLE----- 323
           K+                                + D++  N ++D Y KCG LE     
Sbjct: 160 KHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGL 219

Query: 324 --------------------------DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
                                     DA  +F  M ++D ISWS+M+ G    G  +EAL
Sbjct: 220 FAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEAL 279

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMID 416
           ++F+ M+    +P    +  VL ACS+ G ++ G W H    +    +D      + ++D
Sbjct: 280 EIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLG--TALLD 337

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           +  + G+L    ++  EM  E +  TW A++G   +H   + A+
Sbjct: 338 MYAKCGRLDMGWEVFEEMK-EREIFTWNAMIGGLAIHGRAEDAL 380



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 95/231 (41%), Gaps = 24/231 (10%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           SS++D +      ++   A++    MQ    R      + ++  C    A+++ + VH +
Sbjct: 263 SSMVDGYISAGRYKE---ALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAY 319

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           +     + +  L   LL+M+ K   L+    +F++M ER + +W  MI         + A
Sbjct: 320 LKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDA 379

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVR--------- 210
           LEL   +    ++PN  T   VL AC         H G +  G      +R         
Sbjct: 380 LELFSKLQEGRMKPNGITLVGVLTAC--------AHAGFVDKGLRIFQTMREFYGVDPEL 431

Query: 211 ---SALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
                ++D+  + G    AE + N MP + +  VW +++G    + + D A
Sbjct: 432 EHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLA 482



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 16/196 (8%)

Query: 264 MKRAGFAADQSTLTSVLRACTGLAL--------LELGTQVHVHVLKYDH--DLILNNALL 313
            K   F+A+++  TS L   T L L        L+  TQ+H  VL+  H  D  ++ ALL
Sbjct: 13  FKPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHGLVLRSGHFQDHYVSGALL 72

Query: 314 DMYCK--CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
             Y      + + A+ VFS +   +V  W+ +I G  +N    +A+  +  M +   +PN
Sbjct: 73  KCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVID-ARPN 131

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
             T   +  ACS A  V++G      + K +GI       S  I +    G+L++A K+ 
Sbjct: 132 KFTYPTLFKACSVAQAVQEGRQIHGHVVK-HGIGSDVHIKSAGIHMYASFGRLEDARKMF 190

Query: 432 HEMPYEPDAVTWRALL 447
           +    E D V W  ++
Sbjct: 191 YSG--ESDVVCWNTMI 204


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/582 (39%), Positives = 349/582 (59%), Gaps = 53/582 (9%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R +  TY  L K C    AV+E + +H HV+  G   +  + +  + M+  F  LE+A+ 
Sbjct: 129 RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARK 188

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           +F    E +VV W TMI  Y                                        
Sbjct: 189 MF-YSGESDVVCWNTMIDGY---------------------------------------- 207

Query: 191 LRQLHCGIIKV--GFESDVFVRS-----ALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
              L CG+++   G  + + V++      +I+  AK G L +A  +F+EM  RD + W+S
Sbjct: 208 ---LKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSS 264

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-- 301
           ++ G+       EAL ++++M+R      +  L+SVL AC+ +  ++ G  VH ++ +  
Sbjct: 265 MVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNS 324

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
              D +L  ALLDMY KCG L+    VF  M ++++ +W+ MI GLA +G +++AL+LF 
Sbjct: 325 IKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFS 384

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            ++  R+KPN IT+VGVL AC+HAGFV+ G   F++M++FYG+DP  EHY CM+DLLGR+
Sbjct: 385 KLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRS 444

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           G   EA  LI+ MP +P+A  W ALLGAC++H N DLA    K +L L+PQ+ G Y+LLS
Sbjct: 445 GLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLS 504

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
           NIYA   ++D+V+++RK M+ RGI   PG S +++N  +H F + D SHPQ+ +I + LK
Sbjct: 505 NIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLK 564

Query: 542 HLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
            + ++L   G++PDT+ VL D++ E+KE ++ YHSEKLAI FGL++   GK I I KNLR
Sbjct: 565 IIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLR 624

Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +C DCH+  KL +++ ++ I++RD +RYHHF++G CSC D+W
Sbjct: 625 VCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 157/334 (47%), Gaps = 25/334 (7%)

Query: 183 RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK--LGELRNAECVFNEMPTRDLVV 240
           ++  SL  L QLH  +++ G   D +V  AL+  YA         A  VF+ +P  ++ +
Sbjct: 41  KSITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFI 100

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           WN +I G  +N+ + +A+  Y RM       ++ T  ++ +AC+    ++ G Q+H HV+
Sbjct: 101 WNIVIKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIHGHVV 159

Query: 301 KYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K+    D+ + +A + MY   G LEDA  +F    + DV+ W+TMI G  + G  + A  
Sbjct: 160 KHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSG-ESDVVCWNTMIDGYLKCGVLEAAKG 218

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
           LF  M V  I    + I G+    +  G + D    F  M +   I      +S M+D  
Sbjct: 219 LFAQMPVKNIGSWNVMINGL----AKGGNLGDARKLFDEMSERDEIS-----WSSMVDGY 269

Query: 419 GRAGKLQEAVKLIHEMPYE---PDAVTWRALLGACK----VHRNTDLAICAAKKILNLDP 471
             AG+ +EA+++  +M  E   P      ++L AC     + +   +     +  + LD 
Sbjct: 270 ISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDA 329

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
              GT +L  ++YA   + D   EV + M+ R I
Sbjct: 330 V-LGTALL--DMYAKCGRLDMGWEVFEEMKEREI 360



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 95/231 (41%), Gaps = 24/231 (10%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           SS++D +      ++   A++    MQ    R      + ++  C    A+++ + VH +
Sbjct: 263 SSMVDGYISAGRYKE---ALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAY 319

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           +     + +  L   LL+M+ K   L+    +F++M ER + +W  MI         + A
Sbjct: 320 LKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDA 379

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVR--------- 210
           LEL   +    ++PN  T   VL AC         H G +  G      +R         
Sbjct: 380 LELFSKLQEGRMKPNGITLVGVLTAC--------AHAGFVDKGLRIFQTMREFYGVDPEL 431

Query: 211 ---SALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
                ++D+  + G    AE + N MP + +  VW +++G    + + D A
Sbjct: 432 EHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLA 482


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/562 (40%), Positives = 340/562 (60%), Gaps = 7/562 (1%)

Query: 88   HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMI 147
            H +   + +H   L         ++  LL+++ K  LL  AQ +FD+MP  + V WT +I
Sbjct: 540  HPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALI 599

Query: 148  SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFE 204
            +AY DA    +A+ +       G+RP+ FT   VL AC  +  L     +     + G  
Sbjct: 600  TAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVA 659

Query: 205  SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
              VFV +A +D+Y K GE+  A  VF++M  +D V W +++GG+A N    EAL+L+  M
Sbjct: 660  QSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAM 719

Query: 265  KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL---ILNNALLDMYCKCGS 321
            +  G   D   +   L ACT L  L+LG Q  + ++ +D  L   +L  AL+DMY KCGS
Sbjct: 720  QAEGMKPDCYAVAGALSACTRLGALDLGRQA-IRMVDWDEFLDNPVLGTALIDMYAKCGS 778

Query: 322  LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
              +A  VF +M +KD+I W+ MI GL   G+ + A  L   M+ S +K N  T +G+L +
Sbjct: 779  TVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCS 838

Query: 382  CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
            C+H G ++DG  +F +M K Y I P  EHY CM+DLL RAG LQEA +L+ +MP   +AV
Sbjct: 839  CTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAV 898

Query: 442  TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
               ALLG CK+HRNT+LA    K+++ L+P + G Y++LSNIY+N  +W++ A++R  M+
Sbjct: 899  ILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMK 958

Query: 502  ARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQ 561
            A+G+ K P CSW+E   ++H F V D SHP  D+I K L  L  ++  +GY P T  V+ 
Sbjct: 959  AKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMF 1018

Query: 562  DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTI 621
            D+E E+KE ++ +HSEKLAI F L+    G+TIR+ KNLR+C DCHT  KL +++ ++ I
Sbjct: 1019 DVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREI 1078

Query: 622  VIRDPIRYHHFQDGNCSCGDYW 643
            ++RD  R+H F+DG+CSC DYW
Sbjct: 1079 IVRDNNRFHCFRDGSCSCNDYW 1100



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 132/285 (46%), Gaps = 6/285 (2%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           DL  A+        +G+R DS T   ++  C     +   + V       G     F+  
Sbjct: 607 DLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVAT 666

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
             ++++VK   + +A+ +FD+M  ++ V+W  M+  Y       +AL+L + M  EG++P
Sbjct: 667 AAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKP 726

Query: 174 NMFTYSAVLRACDSLIILRQLHCGIIKVG---FESDVFVRSALIDIYAKLGELRNAECVF 230
           + +  +  L AC  L  L      I  V    F  +  + +ALID+YAK G    A  VF
Sbjct: 727 DCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVF 786

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
            +M  +D++VWN++I G         A  L  +M+++G   + +T   +L +CT   L++
Sbjct: 787 QQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQ 846

Query: 291 LGTQVHVHVLKYDH---DLILNNALLDMYCKCGSLEDAMSVFSRM 332
            G +   ++ K  H    +     ++D+  + G L++A  +   M
Sbjct: 847 DGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDM 891


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/585 (39%), Positives = 350/585 (59%), Gaps = 6/585 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+C G   +  T++ ++    A   V   + +H+ +   GF+   F+   L++M+ K + 
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNMFTYSAVLR 183
           +  A  +FDQMPERN+VSW +MI  +    + D+A+ +   +LRE  V PN  + S+VL 
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120

Query: 184 ACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           AC ++  L   RQ+H  ++K G     +V ++L+D+Y K         +F  +  RD+V 
Sbjct: 121 ACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVT 180

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           WN ++ GF QN   +EA N +  M+R G   D+++ ++VL +   LA L  GT +H  ++
Sbjct: 181 WNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQII 240

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K  Y  ++ +  +L+ MY KCGSL DA  VF  +   +VISW+ MIS    +G + + ++
Sbjct: 241 KLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIE 300

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
           LFE M    I+P+++T V VL ACSH G VE+G  HF SMKK + ++PG EHY+CM+DLL
Sbjct: 301 LFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLL 360

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
           GRAG L EA + I  MP +P    W ALLGAC+ + N  +   AA+++  ++P +PG Y+
Sbjct: 361 GRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYV 420

Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
           LL+N+   S + +E  EVR+ M   G+ KEPGCSWI+V      F   D SH   D+I K
Sbjct: 421 LLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYK 480

Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRK 598
            L+ L + +   GY  +T +V   LE  ++E  + YHSEKLA+ FGL++L     IRI+K
Sbjct: 481 MLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKK 540

Query: 599 NLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           NLR CG CHT  KL +K+ ++ I++RD  R+H F DG CSCGDYW
Sbjct: 541 NLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/562 (40%), Positives = 340/562 (60%), Gaps = 7/562 (1%)

Query: 88  HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMI 147
           H +   + +H   L         ++  LL+++ K  LL  AQ +FD+MP  + V WT +I
Sbjct: 85  HPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALI 144

Query: 148 SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFE 204
           +AY DA    +A+ +       G+RP+ FT   VL AC  +  L     +     + G  
Sbjct: 145 TAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVA 204

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
             VFV +A +D+Y K GE+  A  VF++M  +D V W +++GG+A N    EAL+L+  M
Sbjct: 205 QSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAM 264

Query: 265 KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL---ILNNALLDMYCKCGS 321
           +  G   D   +   L ACT L  L+LG Q  + ++ +D  L   +L  AL+DMY KCGS
Sbjct: 265 QAEGMKPDCYAVAGALSACTRLGALDLGRQA-IRMVDWDEFLDNPVLGTALIDMYAKCGS 323

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
             +A  VF +M +KD+I W+ MI GL   G+ + A  L   M+ S +K N  T +G+L +
Sbjct: 324 TVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCS 383

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
           C+H G ++DG  +F +M K Y I P  EHY CM+DLL RAG LQEA +L+ +MP   +AV
Sbjct: 384 CTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAV 443

Query: 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
              ALLG CK+HRNT+LA    K+++ L+P + G Y++LSNIY+N  +W++ A++R  M+
Sbjct: 444 ILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMK 503

Query: 502 ARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQ 561
           A+G+ K P CSW+E   ++H F V D SHP  D+I K L  L  ++  +GY P T  V+ 
Sbjct: 504 AKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMF 563

Query: 562 DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTI 621
           D+E E+KE ++ +HSEKLAI F L+    G+TIR+ KNLR+C DCHT  KL +++ ++ I
Sbjct: 564 DVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREI 623

Query: 622 VIRDPIRYHHFQDGNCSCGDYW 643
           ++RD  R+H F+DG+CSC DYW
Sbjct: 624 IVRDNNRFHCFRDGSCSCNDYW 645


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/613 (36%), Positives = 365/613 (59%), Gaps = 6/613 (0%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN  S     T F +      A+ +   M+  G  A     + +++ C +  A++    V
Sbjct: 139 RNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQV 198

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H  V+  GF  E F+ + L +M+ K   L +A   F++MP ++ V WT+MI  +      
Sbjct: 199 HCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDF 258

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSAL 213
            KAL   + M+ + V  +     + L AC +L      + LH  I+K+GFE + F+ +AL
Sbjct: 259 KKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNAL 318

Query: 214 IDIYAKLGELRNAECVFN-EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
            D+Y+K G++ +A  VF        +V   +II G+ +   +++AL+ +  ++R G   +
Sbjct: 319 TDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPN 378

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFS 330
           + T TS+++AC   A LE G+Q+H  V+K++   D  +++ L+DMY KCG  + ++ +F 
Sbjct: 379 EFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFD 438

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            +   D I+W+T++   +Q+G  + A++ F  M    +KPN +T V +L  CSHAG VED
Sbjct: 439 EIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVED 498

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G N+F SM+K YG+ P  EHYSC+IDLLGRAGKL+EA   I+ MP+EP+   W + LGAC
Sbjct: 499 GLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGAC 558

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
           K+H + + A  AA K++ L+P++ G ++LLSNIYA  ++W++V  +RK ++   + K PG
Sbjct: 559 KIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPG 618

Query: 511 CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKED 570
            SW+++  + H F V D SHPQ  +I + L +L+ ++  +GY P T  VL D++   KE 
Sbjct: 619 YSWVDIRNKTHVFGVEDWSHPQKKEIYEKLDNLLDQIKRIGYVPQTESVLIDMDDNLKEK 678

Query: 571 SIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYH 630
            + YHSE++A+ F L++   G  I ++KNLR+C DCH+  K  +K+  + I++RD  R+H
Sbjct: 679 LLHYHSERIAVAFSLLTCPTGMPIIVKKNLRVCSDCHSALKFISKVTERNIIVRDISRFH 738

Query: 631 HFQDGNCSCGDYW 643
           HF +G+CSCGDYW
Sbjct: 739 HFSNGSCSCGDYW 751



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 131/391 (33%), Positives = 205/391 (52%), Gaps = 14/391 (3%)

Query: 72  ADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVL 131
           +D+ T A LI+       + + K +H  ++ GG  P TFL N  LN++ K   L+    L
Sbjct: 73  SDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKL 132

Query: 132 FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL 191
           FD+M +RN+VSWT++I+ +       +AL     M  EG     F  S+VL+AC SL  +
Sbjct: 133 FDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAI 192

Query: 192 R---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
           +   Q+HC ++K GF  ++FV S L D+Y+K GEL +A   F EMP +D V+W S+I GF
Sbjct: 193 QFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGF 252

Query: 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDL 306
            +N D  +AL  Y +M       DQ  L S L AC+ L     G  +H  +LK  ++++ 
Sbjct: 253 VKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYET 312

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKD---VISWSTMISGLAQNGYSQEALKLFESM 363
            + NAL DMY K G +  A +VF   I  D   ++S + +I G  +    ++AL  F  +
Sbjct: 313 FIGNALTDMYSKSGDMVSASNVFQ--IHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDL 370

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF-YGIDPGREHYSCMIDLLGRAG 422
           +   I+PN  T   ++ AC++   +E G      + KF +  DP     S ++D+ G+ G
Sbjct: 371 RRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVS--STLVDMYGKCG 428

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
               +++L  E+   PD + W  L+G    H
Sbjct: 429 LFDHSIQLFDEIE-NPDEIAWNTLVGVFSQH 458


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/590 (39%), Positives = 352/590 (59%), Gaps = 4/590 (0%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+   H M   GVR DS TY  ++K C     +   +      +  G+  + F+   +LN
Sbjct: 89  ALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLN 148

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++ K   ++EA  +FD+M  R++V WTTMI+         +A+++   M ++ V  +   
Sbjct: 149 LYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVV 208

Query: 178 YSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
              +++AC +L    +   +H  +I+     DV V+++L+D+YAK G L  A CVF  M 
Sbjct: 209 MLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRML 268

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            ++++ W+++I GFAQN     AL L   M+  G+  D  +L SVL AC+ +  L+LG  
Sbjct: 269 YKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKS 328

Query: 295 VHVHVLKYDH-DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           VH ++++  H D + + A++DMY KCGSL  A +VF ++  +D ISW+ +I+    +G  
Sbjct: 329 VHGYIVRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSG 388

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
           +EAL LF  M+ + +KP++ T   +L A SH+G VE G   F  M   Y I P  +HY+C
Sbjct: 389 EEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYAC 448

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           M+DLL RAG+++EA +LI  M  EP    W ALL  C  H    +   AAKK+L L+P D
Sbjct: 449 MVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDD 508

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQI 533
           PG Y L+SN +A +++WDEVAEVRK M+  G+ K PG S +EVN ++HAF + D SH Q 
Sbjct: 509 PGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQY 568

Query: 534 DKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT 593
           ++I + L  L  ++  +GY P T +VL +LE E KE  +  HSE+LAI FGL++   G  
Sbjct: 569 EEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGPGTR 628

Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + I KNLR+CGDCH   K  +K+ N+ IV+RD  R+HHF+DG CSCGDYW
Sbjct: 629 LLITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/385 (33%), Positives = 218/385 (56%), Gaps = 21/385 (5%)

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           L+  + +   +E A+ +FD+ P+  V +W  MI AY       +AL L   M  EGVRP+
Sbjct: 45  LIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPD 104

Query: 175 MFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
             TY+ VL+AC   + LR   +     +  G+  DVFV +A++++YAK G++  A  VF+
Sbjct: 105 SSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFD 164

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           +M  RDLV W ++I G AQN    EA+++Y++M +     D   +  +++ACT L   ++
Sbjct: 165 KMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKM 224

Query: 292 GTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G  +H ++++ D   D+I+  +L+DMY K G LE A  VF RM+ K+VISWS +ISG AQ
Sbjct: 225 GLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQ 284

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           NG++  AL+L   M+    KP+ +++V VL ACS  GF++ G       K  +G    R 
Sbjct: 285 NGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLG-------KSVHGYIVRRL 337

Query: 410 HYSC-----MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD--LAICA 462
           H+ C     +ID+  + G L  A  +  ++ +  D+++W A++ +  +H + +  L++  
Sbjct: 338 HFDCVSSTAVIDMYSKCGSLSFARTVFDQISFR-DSISWNAIIASYGIHGSGEEALSLFL 396

Query: 463 AKKILNLDPQDPGTYILLSNIYANS 487
             +  N+ P D  T+  L + +++S
Sbjct: 397 QMRETNVKP-DHATFASLLSAFSHS 420



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 148/260 (56%), Gaps = 6/260 (2%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           + ++H  +I  G        + LI  YA+LG + +A  VF++ P   +  WN++I  +++
Sbjct: 23  IAKIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSR 82

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
              + EAL+LY RM   G   D ST T VL+ACT    L  G +     +   Y  D+ +
Sbjct: 83  RGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFV 142

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
             A+L++Y KCG +++AM VF +M ++D++ W+TMI+GLAQNG ++EA+ ++  M   R+
Sbjct: 143 GAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRV 202

Query: 369 KPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           + + + ++G++ AC+  G  + G + H   ++K   +D   +  + ++D+  + G L+ A
Sbjct: 203 EGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQ--TSLVDMYAKNGHLELA 260

Query: 428 VKLIHEMPYEPDAVTWRALL 447
             +   M Y+ + ++W AL+
Sbjct: 261 SCVFRRMLYK-NVISWSALI 279


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/653 (35%), Positives = 384/653 (58%), Gaps = 37/653 (5%)

Query: 26  TPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCL 85
           TPP  +  + +R+++S +D         D   A+     M   G R D+  +  ++K   
Sbjct: 46  TPPKPT--SPSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVS 103

Query: 86  ARHAVEEAKLVHNHVLS---------------------GGFEPETFLVNILLNMHVKFSL 124
               ++  + +H   +                      GG   +TF  N L+ M+ K   
Sbjct: 104 GLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGR 163

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +++++ LF+   +R++VSW TMIS++  +    +AL     M+ EGV  +  T ++VL A
Sbjct: 164 VDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPA 223

Query: 185 C---DSLIILRQLHCGIIKVG-FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           C   + L + +++H  +++      + FV SAL+D+Y    ++ +   VF+ +  R + +
Sbjct: 224 CSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIEL 283

Query: 241 WNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACT-GLALLELGTQVHVH 298
           WN++I G+A+N   ++AL L+  M K AG   + +T+ SV+ AC   LA +  G ++H +
Sbjct: 284 WNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAY 343

Query: 299 VLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
            ++     D+ + +AL+DMY KCG L  +  VF+ M  K+VI+W+ +I     +G  +EA
Sbjct: 344 AIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEA 403

Query: 357 LKLFESM-----KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           L+LF++M     +    KPN +T + V  ACSH+G + +G N F  MK  +G++P  +HY
Sbjct: 404 LELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHY 463

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAV-TWRALLGACKVHRNTDLAICAAKKILNLD 470
           +C++DLLGRAG+L+EA +L++ MP E D V  W +LLGAC++H+N +L   AAK +L+L+
Sbjct: 464 ACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLE 523

Query: 471 PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSH 530
           P     Y+LLSNIY+++  W++  EVRK MR  G+ KEPGCSWIE   ++H F   D SH
Sbjct: 524 PNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSH 583

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           PQ ++++  L+ L +K+   GY PDT+ VL +++ ++KE+ +  HSEKLAI FG+++   
Sbjct: 584 PQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPP 643

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           G TIR+ KNLR+C DCH   K  +K+  + I++RD  R+HHF++G CSCGDYW
Sbjct: 644 GTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 696


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/562 (40%), Positives = 340/562 (60%), Gaps = 7/562 (1%)

Query: 88   HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMI 147
            H +   + +H   L         ++  LL+++ K  LL  AQ +FD+MP  + V WT +I
Sbjct: 564  HPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALI 623

Query: 148  SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFE 204
            +AY DA    +A+ +       G+RP+ FT   VL AC  +  L     +     + G  
Sbjct: 624  TAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVA 683

Query: 205  SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
              VFV +A +D+Y K GE+  A  VF++M  +D V W +++GG+A N    EAL+L+  M
Sbjct: 684  QSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAM 743

Query: 265  KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL---ILNNALLDMYCKCGS 321
            +  G   D   +   L ACT L  L+LG Q  + ++ +D  L   +L  AL+DMY KCGS
Sbjct: 744  QAEGMKPDCYAVAGALSACTRLGALDLGRQA-IRMVDWDEFLDNPVLGTALIDMYAKCGS 802

Query: 322  LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
              +A  VF +M +KD+I W+ MI GL   G+ + A  L   M+ S +K N  T +G+L +
Sbjct: 803  TVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCS 862

Query: 382  CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
            C+H G ++DG  +F +M K Y I P  EHY CM+DLL RAG LQEA +L+ +MP   +AV
Sbjct: 863  CTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAV 922

Query: 442  TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
               ALLG CK+HRNT+LA    K+++ L+P + G Y++LSNIY+N  +W++ A++R  M+
Sbjct: 923  ILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMK 982

Query: 502  ARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQ 561
            A+G+ K P CSW+E   ++H F V D SHP  D+I K L  L  ++  +GY P T  V+ 
Sbjct: 983  AKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMF 1042

Query: 562  DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTI 621
            D+E E+KE ++ +HSEKLAI F L+    G+TIR+ KNLR+C DCHT  KL +++ ++ I
Sbjct: 1043 DVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREI 1102

Query: 622  VIRDPIRYHHFQDGNCSCGDYW 643
            ++RD  R+H F+DG+CSC DYW
Sbjct: 1103 IVRDNNRFHCFRDGSCSCNDYW 1124


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/664 (35%), Positives = 375/664 (56%), Gaps = 58/664 (8%)

Query: 19  RQFSLTITPPVASCNTITRNSSSLLDDFTRFCY-QRDLP-RAMKAMHAMQCHGVRADSVT 76
           R F+    PP  +  ++ R            CY    LP +++ +   M   G+  D   
Sbjct: 61  RLFNTIHFPPALAWKSVIR------------CYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA-------- 128
           +  ++K C     +   + +H +++  G + + +  N L+NM+ K   LEE+        
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 129 ------------------------QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
                                   + +F+ MPE+++VSW T+I+      + ++ L ++ 
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 165 FMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
            M    ++P+ FT S+VL      + +   +++H   I+ G ++D++V S+LID+YAK  
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT 288

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
            + ++  VF  +  RD + WNSII G  QN   DE L  +++M  A       + +S++ 
Sbjct: 289 RVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMP 348

Query: 282 ACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
           AC  L  L LG Q+H ++ +  +D ++ + ++L+DMY KCG++  A  +F RM  +D++S
Sbjct: 349 ACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS 408

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           W+ MI G A +G + +A++LFE M+   IK        VL ACSH G V++ W +F SM 
Sbjct: 409 WTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMT 461

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
           + +GI PG EHY+ + DLLGRAG+L+EA   I  M   P    W  LL AC+VH+N D+A
Sbjct: 462 RDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMA 521

Query: 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQ 519
              A +IL +DP + G YILL+NIY+ +++W E A+ R +MR  GI K P CSWIEV  +
Sbjct: 522 EKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNK 581

Query: 520 IHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKL 579
           ++AF   D SHP  +KI + ++ L++ +   GY PDT+ V  D+E EQK+  +  HSE+L
Sbjct: 582 VYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERL 641

Query: 580 AIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
           AIVFG+++   G TIR+ KNLR+C DCHT  K  +K+  + IV+RD  R+HHF++G CSC
Sbjct: 642 AIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSC 701

Query: 640 GDYW 643
           GDYW
Sbjct: 702 GDYW 705



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 185/380 (48%), Gaps = 39/380 (10%)

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++   +LL ++  LF+ +     ++W ++I  Y    +  ++L   I ML  G+ P+   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKL-------------G 221
           + +VL++C  L+ L     LH  II+VG + D++  +AL+++Y+KL             G
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 222 EL--------RNAECV-----------FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
           E+        R+   V           F  MP +DLV WN+II G A+N   +E L + +
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCG 320
            M  A    D  TL+SVL        +  G ++H   ++   D D+ + ++L+DMY KC 
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT 288

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
            + D+  VF+ + ++D ISW+++I+G  QNG   E L+ F  M +++IKP   +   ++ 
Sbjct: 289 RVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMP 348

Query: 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
           AC+H   +  G           G D      S ++D+  + G ++ A ++   M    D 
Sbjct: 349 ACAHLTTLHLG-KQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DM 406

Query: 441 VTWRALLGACKVHRNTDLAI 460
           V+W A++  C +H     AI
Sbjct: 407 VSWTAMIMGCALHGQAPDAI 426



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 110/272 (40%), Gaps = 46/272 (16%)

Query: 10  KWTKPSSQARQFSLTITPPVASCNTITRN--SSSLLDDFTRFCYQRDLPRAMKAMHAMQC 67
           K T+ +   R F+L       S N+I      + L D+  RF  Q            M  
Sbjct: 286 KCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQ------------MLM 333

Query: 68  HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
             ++  S +++ ++  C     +   K +H ++   GF+   F+ + L++M+ K   +  
Sbjct: 334 AKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRT 393

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A+ +FD+M  R++VSWT MI           A+EL   M  EG++       AVL AC  
Sbjct: 394 AKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACS- 445

Query: 188 LIILRQLHCGII------------KVGFESDVFVRSALIDIYAKLGELRNAE---CVFNE 232
                  H G++              G    V   +A+ D+  + G L  A    C  + 
Sbjct: 446 -------HGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHI 498

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
            PT    +W +++     + ++D A  +  R+
Sbjct: 499 GPTGS--IWATLLSACRVHKNIDMAEKVANRI 528


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/641 (37%), Positives = 371/641 (57%), Gaps = 15/641 (2%)

Query: 9   LKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLP-RAMKAMHAMQC 67
           L + K  S      L  T P  S N +T   ++L++  +R     + P +A+   + M+ 
Sbjct: 140 LLYAKCGSIHHTLLLFNTYPHPSTNVVTW--TTLINQLSR----SNKPFQALTFFNRMRT 193

Query: 68  HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
            G+  +  T++ ++  C     + E + +H  +    F  + F+   LL+M+ K   +  
Sbjct: 194 TGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLL 253

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A+ +FD+MP RN+VSW +MI  +   K+  +A+ +   +L  G  P+  + S+VL AC  
Sbjct: 254 AENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSACAG 311

Query: 188 LIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L+ L   +Q+H  I+K G    V+V+++L+D+Y K G   +A  +F     RD+V WN +
Sbjct: 312 LVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVM 371

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
           I G  +  + ++A   ++ M R G   D+++ +S+  A   +A L  GT +H HVLK  H
Sbjct: 372 IMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGH 431

Query: 305 --DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
             +  ++++L+ MY KCGS+ DA  VF    + +V+ W+ MI+   Q+G + EA+KLFE 
Sbjct: 432 VKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEE 491

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           M    + P YIT V VL ACSH G ++DG+ +F SM   + I PG EHY+CM+DLLGR G
Sbjct: 492 MLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVG 551

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
           +L+EA + I  MP+EPD++ W ALLGAC  H N ++    A+++  L+P +PG Y+LLSN
Sbjct: 552 RLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSN 611

Query: 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKH 542
           IY      +E  EVR+ M   G+ KE GCSWI+V  +   FN  D SH +  +I   L+ 
Sbjct: 612 IYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGMLQK 671

Query: 543 LIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
           L + +   GY  +T +    +EG + E S+  HSEKLA+ FGL+ L  G  +RI+KNLR 
Sbjct: 672 LKELIKRRGYVAETQFATNSVEGSE-EQSLWCHSEKLALAFGLLVLPPGSPVRIKKNLRT 730

Query: 603 CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           CGDCHT  K  +++  + I++RD  R+H F +G+CSC DYW
Sbjct: 731 CGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW 771



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 130/427 (30%), Positives = 210/427 (49%), Gaps = 42/427 (9%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP--ERNVVSWTTM 146
           +++ A  +H+ +++         +N LL ++ K   +    +LF+  P    NVV+WTT+
Sbjct: 112 SLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTL 171

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGF 203
           I+    +    +AL     M   G+ PN FT+SA+L AC    +L   +Q+H  I K  F
Sbjct: 172 INQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCF 231

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
            +D FV +AL+D+YAK G +  AE VF+EMP R+LV WNS+I GF +N     A+ +++ 
Sbjct: 232 LNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFRE 291

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGS 321
           +   G   DQ +++SVL AC GL  L+ G QVH  ++K      + + N+L+DMYCKCG 
Sbjct: 292 VLSLG--PDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGL 349

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
            EDA  +F     +DV++W+ MI G  +    ++A   F++M    ++P+  +   +  A
Sbjct: 350 FEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHA 409

Query: 382 CSHAGFVEDG---------WNHFK------SMKKFYG-----------IDPGREH----Y 411
            +    +  G           H K      S+   YG               +EH    +
Sbjct: 410 SASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCW 469

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYE---PDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           + MI +  + G   EA+KL  EM  E   P+ +T+ ++L AC      D        + N
Sbjct: 470 TAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMAN 529

Query: 469 LDPQDPG 475
           +    PG
Sbjct: 530 VHNIKPG 536



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 115/235 (48%), Gaps = 9/235 (3%)

Query: 276 LTSVLRACTGLALLELGTQVHVH-VLKYDHDLILN-NALLDMYCKCGSLEDAMSVFSRMI 333
           L  +L     L  L+  TQ+H   V   +H  + N N LL +Y KCGS+   + +F+   
Sbjct: 100 LKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYP 159

Query: 334 Q--KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
               +V++W+T+I+ L+++    +AL  F  M+ + I PN+ T   +L AC+HA  + +G
Sbjct: 160 HPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEG 219

Query: 392 WN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
              H    K  +  DP     + ++D+  + G +  A  +  EMP+  + V+W +++   
Sbjct: 220 QQIHALIHKHCFLNDPFVA--TALLDMYAKCGSMLLAENVFDEMPHR-NLVSWNSMIVGF 276

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
             ++    AI   +++L+L P       +LS   A   + D   +V  ++  RG+
Sbjct: 277 VKNKLYGRAIGVFREVLSLGPDQVSISSVLSAC-AGLVELDFGKQVHGSIVKRGL 330


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/603 (38%), Positives = 372/603 (61%), Gaps = 10/603 (1%)

Query: 50  CYQRD--LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY  +     +++ +  M   G   ++ T+   +K  +   A   AK VH  +L   +E 
Sbjct: 221 CYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYEL 280

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           +  +   LL ++ +   + +A  +F++MP+ +VV W+ MI+ +C     +KA+++ I M 
Sbjct: 281 DPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRM- 339

Query: 168 REG-VRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
           REG V PN FT S++L  C       +  QLH  ++KVGF+ DV+V +ALID+YAK  ++
Sbjct: 340 REGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKM 399

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
             A  +F E+ ++++V WN++I G+    +  +ALN+++   R   +  + T +S L AC
Sbjct: 400 DTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGAC 459

Query: 284 TGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
             LA +ELG QVH   +K ++   + ++N+L+DMY KCG ++ A +VF+ M   DV SW+
Sbjct: 460 ASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWN 519

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
            +ISG + +G  ++AL++F+ MK S  KPN +T +GVL  CS+AG ++ G + F+SM   
Sbjct: 520 ALISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICD 579

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
           +GI+P  EHY+CM+ L GR+G+L +A+ LI  +PYEP  + WRA+L A     N + A  
Sbjct: 580 HGIEPCLEHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARR 639

Query: 462 AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIH 521
           +A++IL ++P+D  TY+LLSN+YA +++W  VA +RK+M+ +G+ KEPG SWIE    +H
Sbjct: 640 SAEEILKINPKDEATYVLLSNMYAGAKQWANVASIRKSMKEKGVKKEPGLSWIEHQGDVH 699

Query: 522 AFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAI 581
            F+V  S HP +  IN  L+ L  K    GY PD N VL D++ E+K+  +  HSE+LA+
Sbjct: 700 FFSVGSSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLAL 759

Query: 582 VFGLMSLTQGKT-IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
            +GL+ +   +  I I KNLRIC DCH+  K+ + +  + +VIRD  R+HHF  G CSC 
Sbjct: 760 AYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCD 819

Query: 641 DYW 643
           D+W
Sbjct: 820 DHW 822



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/380 (30%), Positives = 192/380 (50%), Gaps = 11/380 (2%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           DS  Y  +++ C+ ++    AK +H  +L  G   + F  NILLN +VK    ++A  LF
Sbjct: 48  DSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLF 107

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG--VRPNMFT-YSAVLRACDSLI 189
           D+MPERN VS+ T+   Y         + L   + REG  + P++FT +  +  + D   
Sbjct: 108 DEMPERNNVSYVTLTQGYA----CQDPVGLYSRLHREGHELNPHVFTSFLKLFVSLDKAE 163

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           I   LH  I+K+G++S+ FV +ALI+ Y+  G + +A  VF  +  +D+VVW  I+  + 
Sbjct: 164 ICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYV 223

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           +N   +++L L  RM   GF  +  T  + L+A  GL        VH  +LK  Y+ D  
Sbjct: 224 ENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPR 283

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           +   LL +Y + G + DA  VF+ M + DV+ WS MI+   QNG+  +A+ +F  M+   
Sbjct: 284 VGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGF 343

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           + PN  T+  +L  C+  G           +    G D      + +ID+  +  K+  A
Sbjct: 344 VVPNEFTLSSILNGCA-IGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTA 402

Query: 428 VKLIHEMPYEPDAVTWRALL 447
           VKL  E+    + V+W  ++
Sbjct: 403 VKLFAELS-SKNVVSWNTVI 421



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 156/317 (49%), Gaps = 10/317 (3%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
            RFC      +A+     M+   V  +  T + ++  C         + +H  V+  GF+
Sbjct: 321 ARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFD 380

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
            + ++ N L++++ K   ++ A  LF ++  +NVVSW T+I  Y +     KAL +    
Sbjct: 381 LDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREA 440

Query: 167 LREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
           LR  V     T+S+ L AC SL  +    Q+H   IK      V V ++LID+YAK G++
Sbjct: 441 LRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDI 500

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           + A+ VFNEM T D+  WN++I G++ +    +AL ++  MK +    +  T   VL  C
Sbjct: 501 KVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGC 560

Query: 284 TGLALLELGTQVHVHVLKYDHD----LILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVI 338
           +   L++ G      ++  DH     L     ++ ++ + G L+ AM++   +  +  V+
Sbjct: 561 SNAGLIDQGQDCFESMI-CDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVM 619

Query: 339 SWSTMISGLAQNGYSQE 355
            W  M+S  + N Y++E
Sbjct: 620 IWRAMLSA-SMNQYNEE 635


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/613 (39%), Positives = 365/613 (59%), Gaps = 38/613 (6%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+  +S T+  L+K C       E + +H  VL  GF+ + ++   L++M+V+   LE+A
Sbjct: 59  GLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDA 118

Query: 129 -------------------------------QVLFDQMPERNVVSWTTMISAYCDAKMND 157
                                          Q LFD++P ++VVSW  MIS Y +     
Sbjct: 119 YKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYK 178

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALI 214
           +ALEL   M++  VRP+  TY  VL AC    S+ + RQ+H  +   GF+S++ + +ALI
Sbjct: 179 EALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALI 238

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           D+Y+K GE+  A  +F  +  +D++ WN++IGG+   +   EAL L++ M R+G   +  
Sbjct: 239 DLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 298

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKYDHDLI----LNNALLDMYCKCGSLEDAMSVFS 330
           T+ SVL AC  L  +++G  +HV++ K    +     L  +L+DMY KCG +E A  VF+
Sbjct: 299 TMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 358

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            M+ K + SW+ MI G A +G +  +  LF  M+   I+P+ IT VG+L ACSH+G ++ 
Sbjct: 359 SMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDL 418

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G + F+SM + Y + P  EHY CMIDLLG +G  +EA ++I+ M  EPD V W +LL AC
Sbjct: 419 GRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKAC 478

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
           K+H N +LA   A+ ++ ++P++P +YILLSNIYA++ +W++VA +R  +  + + K PG
Sbjct: 479 KMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPG 538

Query: 511 CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKED 570
           CS IEV+  +  F V D  HPQ  +I   L+ +   L   G+ PDT+ VLQ++E E KE 
Sbjct: 539 CSSIEVDSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEG 598

Query: 571 SIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYH 630
           ++++HSEKLAI FGL+S   G  + I KNLR+C +CH   KL +K+  + IV RD  R+H
Sbjct: 599 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRFH 658

Query: 631 HFQDGNCSCGDYW 643
           HF+DG CSC DYW
Sbjct: 659 HFRDGVCSCNDYW 671



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/399 (29%), Positives = 208/399 (52%), Gaps = 40/399 (10%)

Query: 122 FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
           F  L  A  +F+ + E N + W TMI  +  +     +L L + M+  G+ PN +T+  +
Sbjct: 11  FDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFL 70

Query: 182 LRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDI---------------------- 216
           L++C    +    +Q+H  ++K+GF+ D++V ++LI +                      
Sbjct: 71  LKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDV 130

Query: 217 ---------YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
                    YA  G++R+A+ +F+E+P +D+V WN++I G+A+     EAL L++ M + 
Sbjct: 131 VSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKM 190

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDA 325
               D+ST  +VL AC     +ELG QVH  V    +D +L + NAL+D+Y KCG +E A
Sbjct: 191 NVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETA 250

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F  +  KDVISW+T+I G       +EAL LF+ M  S   PN +T++ VL AC+H 
Sbjct: 251 CGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHL 310

Query: 386 GFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           G ++ G W H    K+  G+       + +ID+  + G ++ A ++ + M ++  + +W 
Sbjct: 311 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLS-SWN 369

Query: 445 ALLGACKVHRNTDLA--ICAAKKILNLDPQDPGTYILLS 481
           A++    +H   D +  + +  + + ++P D     LLS
Sbjct: 370 AMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLS 408



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 175/355 (49%), Gaps = 24/355 (6%)

Query: 50  CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPET 109
           CY+     A++    M    VR D  TY  ++  C    ++E  + VH+ V   GF+   
Sbjct: 176 CYKE----ALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNL 231

Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
            +VN L++++ K   +E A  LF  +  ++V+SW T+I  Y    +  +AL L   MLR 
Sbjct: 232 KIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRS 291

Query: 170 GVRPNMFTYSAVLRAC---DSLIILRQLHCGIIK--VGFESDVFVRSALIDIYAKLGELR 224
           G  PN  T  +VL AC    ++ I R +H  I K   G  +   +R++LID+YAK G++ 
Sbjct: 292 GETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIE 351

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
            A  VFN M  + L  WN++I GFA +   D + +L+ RM++ G   D  T   +L AC+
Sbjct: 352 AAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACS 411

Query: 285 GLALLELG-------TQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKD 336
              +L+LG       TQ +    K +H       ++D+    G  ++A  + + M ++ D
Sbjct: 412 HSGMLDLGRHIFRSMTQDYKMTPKLEH----YGCMIDLLGHSGLFKEAEEMINTMEMEPD 467

Query: 337 VISWSTMISGLAQNGYSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVED 390
            + W +++     +G  + A    +++ K+    P+   ++  ++A   AG  ED
Sbjct: 468 GVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYAS--AGRWED 520


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/580 (39%), Positives = 348/580 (60%), Gaps = 7/580 (1%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R +  TY  L+K C    A+ E K VH+ ++  G+  +  + N+L+ M+ K   + EA+ 
Sbjct: 21  REEISTYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARS 80

Query: 131 LFDQMPERN--VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           +FDQ+ E+N  V+SW  +I AY    +  +AL L   M  EGV  N  T    + AC SL
Sbjct: 81  VFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASL 140

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
                 R +H   +    ESD  V ++L++++ K   +  A  VF+ +P ++LV WN+++
Sbjct: 141 PSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMV 200

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYD 303
             ++QN    +A+ +++ M   G   D  T  +++ AC  LA    G  VH  +      
Sbjct: 201 AVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIP 260

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D+ L  A++  Y KCG L++A ++F  + +K+ ++WS +++  AQNGY  EA++L+  M
Sbjct: 261 MDVALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEM 320

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
               ++ N IT +G+LFACSHAG   DG ++F SM + +G+ P  EHY  +IDLLGR+G+
Sbjct: 321 VQGGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQ 380

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           LQ +  LI+ MPYEPD+  W ALLGAC++H + D     A+ I  LDP+D G YILLSN+
Sbjct: 381 LQLSEDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLSNL 440

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           Y+++ + DE    RK MR RGITK+PG S IEV  ++H F  A   HPQ+ +I+  ++ L
Sbjct: 441 YSSTGRMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERL 500

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
             ++   GY  D   VL+D+E E+KE  + YHSE+LAI FGL+S   G  + I KNLR+C
Sbjct: 501 KARVKEAGYVADVRAVLRDVEEEEKEQLLWYHSERLAIAFGLISTPPGTALHIVKNLRVC 560

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            DCH   K  +K+  + IV+RD IR+HHF++G CSCGDYW
Sbjct: 561 FDCHAAVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 150/315 (47%), Gaps = 15/315 (4%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M   GV A+ VT    I  C +  + EE ++VH   +    E +T +   L+N
Sbjct: 111 ALHLFKTMDLEGVIANQVTLINAIDACASLPSEEEGRIVHAIAVDKRLESDTMVGTSLVN 170

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M  K   ++ A+ +FD +P +N+V+W  M++ Y       KA+++  FM  EGV+P+  T
Sbjct: 171 MFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAVT 230

Query: 178 YSAVLRACDSLII---LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +  ++ AC +L      R +H  I   G   DV + +A++  Y K G L NA  +F+ + 
Sbjct: 231 FLTIIDACAALAAHTEGRMVHDDITASGIPMDVALGTAVMHFYGKCGRLDNARAIFDSLG 290

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            ++ V W++I+  +AQN    EA+ LY  M + G   +  T   +L AC+       G  
Sbjct: 291 KKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGLEVNGITFLGLLFACSHAGRSMDGVD 350

Query: 295 VHVHVLK-------YDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
             V +++       ++H L     L+D+  + G L+ +  + + M  + D  +W  ++  
Sbjct: 351 YFVSMIRDFGVVPVFEHYL----NLIDLLGRSGQLQLSEDLINSMPYEPDSSAWLALLGA 406

Query: 347 LAQNGYSQEALKLFE 361
              +G      ++ E
Sbjct: 407 CRMHGDVDRGARIAE 421



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 107/213 (50%), Gaps = 19/213 (8%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++    M   GV+ D+VT+  +I  C A  A  E ++VH+ + + G   +  L   ++
Sbjct: 211 KAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVALGTAVM 270

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           + + K   L+ A+ +FD + ++N V+W+ +++AY       +A+EL   M++ G+  N  
Sbjct: 271 HFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGLEVNGI 330

Query: 177 TYSAVLRACDS-----------LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           T+  +L AC             + ++R    G++ V FE  +     LID+  + G+L+ 
Sbjct: 331 TFLGLLFACSHAGRSMDGVDYFVSMIRDF--GVVPV-FEHYL----NLIDLLGRSGQLQL 383

Query: 226 AECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
           +E + N MP   D   W +++G    + DVD  
Sbjct: 384 SEDLINSMPYEPDSSAWLALLGACRMHGDVDRG 416


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 249/680 (36%), Positives = 375/680 (55%), Gaps = 85/680 (12%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKC-CLARHAVEEAKLVHNHVLSGGF 105
           T + +  D   A++    MQ    R D+ T+  ++    L     +  + +H  V+  G 
Sbjct: 120 TAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGT 179

Query: 106 EPETFLVNILLNMHVK---------FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
              T ++N L++ +VK          SL+ EA+ LFD+MP R+ +SWTT+I+ Y   K N
Sbjct: 180 GFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGY--VKNN 237

Query: 157 D---------------------------------KALELLIFMLREGVRPNMFTYSAVLR 183
           D                                 +A E+   M+   ++ + FT+++V+ 
Sbjct: 238 DLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVIS 297

Query: 184 ACDSLIILR---QLHCGIIKV----GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
            C +    R   ++H   +K       +  + V +ALI  Y K G++  A+ +FN+MP R
Sbjct: 298 VCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPER 357

Query: 237 DLVVWNSIIGGF-------------------------------AQNSDVDEALNLYKRMK 265
           DLV WN I+ G+                               AQ    +EAL  + RMK
Sbjct: 358 DLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMK 417

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD--LILNNALLDMYCKCGSLE 323
             GF          + +C+ L  L+ G Q+H  V++Y ++  L   NAL+ MY +CG ++
Sbjct: 418 LQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVD 477

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
            A  +F  M   D ISW+ MI+ L Q+G   +A++LFE M    I P+ I+ + V+ ACS
Sbjct: 478 AAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACS 537

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
           HAG V++G  +F SM   YG++P  EHY+ +IDLL RAGK  EA +++  MP+EP A  W
Sbjct: 538 HAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIW 597

Query: 444 RALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503
            ALL  C++H N DL I AA+++  L PQ  GTY+LLSN+YA + +W+++A+VRK MR R
Sbjct: 598 EALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDR 657

Query: 504 GITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDL 563
           G+ KEPGCSWIEV  ++H+F V D++HP++ +I  +L+ L+ ++  +GY PDT  VL D+
Sbjct: 658 GVKKEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDV 717

Query: 564 EGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVI 623
           E + KE  +  HSEKLA+ +G M L  G T+R+ KNLRICGDCH   K  +K+  + IV+
Sbjct: 718 ESDLKEHELSTHSEKLAVAYGFMKLPHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVV 777

Query: 624 RDPIRYHHFQDGNCSCGDYW 643
           RD  R+HHF+DG CSCGDYW
Sbjct: 778 RDGKRFHHFRDGKCSCGDYW 797



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/508 (26%), Positives = 228/508 (44%), Gaps = 120/508 (23%)

Query: 70  VRADSVTYAELIKCCLARHAVEE--AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           +R  +  Y  L++ C  +  +    A+ VH H+++ GF+P   ++N L++++ K S L  
Sbjct: 7   IRTAANRYGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNY 66

Query: 128 AQVLFDQMPERNVVSWTTMISAYC---DAKMNDK-------------------------- 158
           A+ LFD++P+ ++V+ TT+I+AY    D K++ K                          
Sbjct: 67  ARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNH 126

Query: 159 ----ALELLIFMLREGVRPNMFTYSAVLRACDSLII-----LRQLHCGIIKVGFESDVFV 209
               A+EL   M R+  RP+ +T+++VL A  +L+       +QLHC ++K G      V
Sbjct: 127 DGHAAIELFCDMQRDNFRPDNYTFTSVLGAL-ALVAEKEKHCQQLHCAVVKSGTGFVTSV 185

Query: 210 RSALIDIYAKLGE---------LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD----- 255
            +ALI  Y K            +  A  +F+EMP RD + W +II G+ +N+D+D     
Sbjct: 186 LNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEF 245

Query: 256 --------------------------EALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
                                     EA  ++++M  +    D+ T TSV+  C      
Sbjct: 246 LNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCF 305

Query: 290 ELGTQVHVHVLKY------DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS-- 341
            LG ++H + LK       D  + +NNAL+  Y KCG ++ A  +F++M ++D++SW+  
Sbjct: 306 RLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNII 365

Query: 342 -----------------------------TMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
                                         MISGLAQ G+++EALK F  MK+   +P  
Sbjct: 366 LSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCD 425

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
               G + +CS  G ++ G      + + YG +      + +I +  R G +  A  L  
Sbjct: 426 YAFAGAIISCSVLGSLKHGRQLHAQVVR-YGYESSLSAGNALITMYARCGVVDAAHCLFI 484

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAI 460
            MP   DA++W A++ A   H     AI
Sbjct: 485 NMPC-VDAISWNAMIAALGQHGQGTQAI 511



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 138/321 (42%), Gaps = 61/321 (19%)

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMP--TRDLVVWNSIIGGFAQNSDVDEALNLY 261
           + D+  R+ LI  Y+  G+L+ +  +F++ P   RD V +N++I  ++ N D   A+ L+
Sbjct: 76  QPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELF 135

Query: 262 KRMKRAGFAADQSTLTSVLRACTGLALLELG-TQVHVHVLKYDHDLILN--NALLDMYCK 318
             M+R  F  D  T TSVL A   +A  E    Q+H  V+K     + +  NAL+  Y K
Sbjct: 136 CDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVK 195

Query: 319 CGS---------LEDAMSVFSRMIQKDVISWST--------------------------- 342
           C +         + +A  +F  M  +D +SW+T                           
Sbjct: 196 CAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGV 255

Query: 343 ----MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
               MISG A  G   EA ++F  M +S+I+ +  T   V+  C++AG    G    K M
Sbjct: 256 AWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLG----KEM 311

Query: 399 KKFY-------GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
             ++         D      + +I    + GK+  A ++ ++MP E D V+W  +L    
Sbjct: 312 HAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMP-ERDLVSWNIILSGYV 370

Query: 452 VHRNTDLAICAAKKILNLDPQ 472
             R  D     AK   N  P+
Sbjct: 371 NVRCMD----EAKSFFNEMPE 387


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/629 (38%), Positives = 371/629 (58%), Gaps = 39/629 (6%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           DL   ++    M   G   ++ T+  L+K C      EE + +H  V+  G E + +   
Sbjct: 63  DLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHT 122

Query: 114 ILLNMHVKFSLLEEAQVLFDQ-------------------------------MPERNVVS 142
            L++M+ +   LE+A+ +FD                                + ER+VVS
Sbjct: 123 SLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVS 182

Query: 143 WTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGII 199
           W  MI+ Y +    ++ALEL   M+R  VRP+  T  +VL AC    S+ + R++H  + 
Sbjct: 183 WNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVD 242

Query: 200 KV-GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEAL 258
              GF S + + +A I +Y+K G++  A  +F  +  +D+V WN++IGG+   +   EAL
Sbjct: 243 DHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEAL 302

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK----YDHDLILNNALLD 314
            L++ M R+G + +  T+ SVL AC  L  +++G  +HV++ K      +   L  +L+D
Sbjct: 303 LLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLID 362

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           MY KCG +E A  VF+ M+ K + SW+ MI G A +G +  A  LF  M+ + I+P+ IT
Sbjct: 363 MYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDIT 422

Query: 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
           +VG+L ACSH+G ++ G + FKS+ + Y I P  EHY CMIDLLG AG  +EA ++IH M
Sbjct: 423 LVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMM 482

Query: 435 PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494
           P EPD V W +LL ACK+H N +LA   A+K++ ++P++ G+Y+LLSNIYA + +W++VA
Sbjct: 483 PMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVA 542

Query: 495 EVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAP 554
            +R+ +  +G+ K PGCS IE++  +H F + D  HPQ  +I + L+ +   L   G+ P
Sbjct: 543 RIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGFVP 602

Query: 555 DTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTA 614
           DT+ VLQ++E E KE ++++HSEKLAI FGL+S   G  + + KNLR+C +CH   KL +
Sbjct: 603 DTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTVVKNLRVCRNCHEATKLIS 662

Query: 615 KMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           K+  + IV RD  R+HHF+DG CSC DYW
Sbjct: 663 KIYKREIVARDRTRFHHFRDGVCSCCDYW 691



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/429 (28%), Positives = 206/429 (48%), Gaps = 44/429 (10%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHV---KFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
            H  ++  G     + ++ LL + V    F  L  A  +F+   E N++ W TM+     
Sbjct: 1   THAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLAS 60

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFV 209
           +      LE+ + M+  G  PN +T+  +L++C         RQ+H  ++K+G E D + 
Sbjct: 61  SSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120

Query: 210 RSALIDIYAKLGEL-------------------------------RNAECVFNEMPTRDL 238
            ++LI +YA+ G L                               R+A  VF+ +  RD+
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           V WN++I G+ +N   +EAL L+K M R     D+ TL SVL AC     +ELG ++H  
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTL 240

Query: 299 V---LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           V     +   L + NA + +Y KCG +E A  +F  +  KDV+SW+T+I G       +E
Sbjct: 241 VDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKE 300

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCM 414
           AL LF+ M  S   PN +T++ VL AC+H G ++ G W H    K+  G+  G    + +
Sbjct: 301 ALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSL 360

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL--NLDPQ 472
           ID+  + G ++ A ++ + M ++  + +W A++    +H   + A     ++    ++P 
Sbjct: 361 IDMYAKCGDIEAAHQVFNSMMHKSLS-SWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPD 419

Query: 473 DPGTYILLS 481
           D     LLS
Sbjct: 420 DITLVGLLS 428


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/601 (40%), Positives = 355/601 (59%), Gaps = 45/601 (7%)

Query: 88  HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK--FSLLEEAQVLFDQMPERNVVSWTT 145
           H +++   + + ++  GF  +TF  + LL       F  L+ +  +FD++   N   W T
Sbjct: 40  HNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNT 99

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVG 202
           M+ AY  +   +KAL L   M++  V P+ +TY  V++AC   ++    +++H  ++KVG
Sbjct: 100 MMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVG 159

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI------------------ 244
           F+SDV+V++ LI++YA  G +R+A  +F+E P  D V WNSI                  
Sbjct: 160 FDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWK 219

Query: 245 ----------------IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
                           I G+ QN   +EAL ++  M   G   D+  + SVL AC  L++
Sbjct: 220 LFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSI 279

Query: 289 LELGTQVHVHVLKYDHDLILN--NALL----DMYCKCGSLEDAMSVFSRMIQKDVISWST 342
           ++ G  +H  V++   +  +N  NAL+    DMY KCG +E+A+ VF+ M +K V SW+ 
Sbjct: 280 VKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNA 339

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           +I GLA NG  + +L +F  MK + + PN IT +GVL AC H G V++G  HF SM + +
Sbjct: 340 LIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKH 399

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           GI+P  +HY CM+DLLGRAG L EA KLI  MP  PD  TW ALLGACK H +T++    
Sbjct: 400 GIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERV 459

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
            +K++ L P   G ++LLSNI+A+   W++V EVR  M+ +G+ K PGCS IE N  +H 
Sbjct: 460 GRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHE 519

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F   D +HP I+K+   L  + ++L   GYAPDTN V  D++ E+KE ++  HSEKLAI 
Sbjct: 520 FLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIA 579

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           FGL++++    IRI KNLRIC DCHT AKL +K   + IV+RD  R+H+F++G CSC DY
Sbjct: 580 FGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDY 639

Query: 643 W 643
           W
Sbjct: 640 W 640



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 174/362 (48%), Gaps = 49/362 (13%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+     M  + V  D+ TY  +++ C  R      K +H+HVL  GF+ + ++ N L+
Sbjct: 112 KALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLI 171

Query: 117 NMHVKFSLLEEAQVLFDQMP----------------------------------ERNVVS 142
           NM+     + +A+ LFD+ P                                  E+++VS
Sbjct: 172 NMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVS 231

Query: 143 WTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGII 199
           W+ +IS Y    M ++AL + I M   G+R +     +VL AC  L I+   + +H  +I
Sbjct: 232 WSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVI 291

Query: 200 KVGFESDVFVRSALI----DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
           ++G ES V +++ALI    D+Y K G + NA  VFN M  + +  WN++I G A N  V+
Sbjct: 292 RMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVE 351

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NA 311
            +L+++  MK  G   ++ T   VL AC  + L++ G + H   +   H +  N      
Sbjct: 352 RSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEG-RCHFASMIEKHGIEPNVKHYGC 410

Query: 312 LLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           ++D+  + G L +A  +   M +  DV +W  ++    ++G ++   ++    K+  ++P
Sbjct: 411 MVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERV--GRKLIELQP 468

Query: 371 NY 372
           ++
Sbjct: 469 DH 470



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 149/315 (47%), Gaps = 58/315 (18%)

Query: 182 LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIY--AKLGELRNAECVFNEMPTRDLV 239
           L  C +L    ++   +I  GF SD F  S L+     +    L  +  +F+ +   +  
Sbjct: 36  LHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGF 95

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG-TQVHVH 298
           +WN+++  + Q++  ++AL LYK M +     D  T   V++AC  + LLE G  ++H H
Sbjct: 96  MWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACA-VRLLEFGGKEIHDH 154

Query: 299 VLK--YDHDLILNNALLDMYCKCGSLED-------------------------------- 324
           VLK  +D D+ + N L++MY  CG++ D                                
Sbjct: 155 VLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQV 214

Query: 325 --AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
             A  +F+ M +KD++SWS +ISG  QNG  +EAL +F  M  + ++ + + +V VL AC
Sbjct: 215 MEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSAC 274

Query: 383 SHAGFVEDGWNHFKSMKKFYG--IDPGREHY----SCMI----DLLGRAGKLQEAVKLIH 432
           +H   V+ G       K  +G  I  G E Y    + +I    D+  + G ++ A+++ +
Sbjct: 275 AHLSIVKTG-------KMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFN 327

Query: 433 EMPYEPDAVTWRALL 447
            M  E    +W AL+
Sbjct: 328 GME-EKGVSSWNALI 341


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/583 (37%), Positives = 354/583 (60%), Gaps = 31/583 (5%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G++ D  T+  L+  C  +    + + +H H++         +   L++M+ +   L  A
Sbjct: 273 GIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYA 332

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +F++M ERN  SW +MI  Y       +AL L   M   G++P+ F+ S++L +C SL
Sbjct: 333 KEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSL 392

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM--PTRDLVVWNS 243
                 R+LH  I++   E +  ++  L+D+YAK G +  A  V+++     R+  +WNS
Sbjct: 393 SDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNS 452

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD 303
           I+ G+A      E+ N +  M  +    D  T+ +++                       
Sbjct: 453 ILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNL--------------------- 491

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
             L+L  AL+DMY KCG++  A +VF  M  K+++SW+ MISG +++G S+EAL L+E M
Sbjct: 492 --LVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEM 549

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
               + PN +T + +L ACSH G VE+G   F SM++ Y I+   EHY+CM+DLLGRAG+
Sbjct: 550 PKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGR 609

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L++A + + +MP EP+  TW ALLGAC+VH++ D+   AA+++  LDPQ+PG Y+++SNI
Sbjct: 610 LEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNI 669

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           YA + +W EV ++R+ M+ +G+ K+PG SWIE+N +I  F+    +HP+ ++I  +L+HL
Sbjct: 670 YAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHL 729

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQY---HSEKLAIVFGLMSLTQGKTIRIRKNL 600
             +  G+GY PDT+++LQ+++  ++E+  +Y   HSE+LA+  GL+SL +  TIR+ KNL
Sbjct: 730 TLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNL 789

Query: 601 RICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           RICGDCHT  K  +K+  + I+ RD  R+HHF++G CSCGDYW
Sbjct: 790 RICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 116/322 (36%), Positives = 196/322 (60%), Gaps = 14/322 (4%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE---AQ 129
           + + Y+ LI+ C+  ++ +  K +H  ++S G+ P+ +L+  +L ++ +   L++   A+
Sbjct: 70  NPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYAR 129

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF--MLREGVRPNMFTYSAVLRACDS 187
            LF++MPERN+ +W TMI AY  A+++D      IF  ML+ GV P+ FT+++ LR C +
Sbjct: 130 KLFEEMPERNLTAWNTMILAY--ARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGA 187

Query: 188 LIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L      +Q+H  +I  GF+ D FV +ALID+YAK  +  +   VF+EM  R+ V WNSI
Sbjct: 188 LRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSI 247

Query: 245 IGGFAQNSDVDEALNLYKRMKRA--GFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY 302
           I   AQ    ++AL L+ RM+ +  G   DQ T T++L  C        G Q+H H+++ 
Sbjct: 248 ISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRA 307

Query: 303 D--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
           +   ++I+   L+ MY +CG L  A  +F+RM +++  SW++MI G  QNG +QEAL+LF
Sbjct: 308 NITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLF 367

Query: 361 ESMKVSRIKPNYITIVGVLFAC 382
           + M+++ IKP+  ++  +L +C
Sbjct: 368 KQMQLNGIKPDCFSLSSMLSSC 389



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/400 (30%), Positives = 221/400 (55%), Gaps = 19/400 (4%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           GV  D+ T+A  ++ C A  + +  K VH+ +++ GF+ +TF+ N L++M+ K    E  
Sbjct: 170 GVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESC 229

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML--REGVRPNMFTYSAVLRACD 186
             +FD+M ERN V+W ++ISA       + AL L + M    +G++P+ FT++ +L  C 
Sbjct: 230 LKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCA 289

Query: 187 SLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
           +       RQ+H  +I+     ++ V + L+ +Y++ G L  A+ +FN M  R+   WNS
Sbjct: 290 NQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNS 349

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-- 301
           +I G+ QN +  EAL L+K+M+  G   D  +L+S+L +C  L+  + G ++H  +++  
Sbjct: 350 MIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNT 409

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD--VISWSTMISGLAQNGYSQEALKL 359
            + + IL   L+DMY KCGS++ A  V+ + I+KD     W+++++G A  G  +E+   
Sbjct: 410 MEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNH 469

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK----FYGIDPGRE--HYSC 413
           F  M  S I+ + +T+V ++        + D ++   ++ K    F  ++ G+    ++ 
Sbjct: 470 FLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITKARTVFDNMN-GKNIVSWNA 528

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYE---PDAVTWRALLGAC 450
           MI    + G  +EA+ L  EMP +   P+ VT+ A+L AC
Sbjct: 529 MISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSAC 568



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 173/363 (47%), Gaps = 42/363 (11%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    MQ +G++ D  + + ++  C++    ++ + +HN ++    E E  L  +L++
Sbjct: 363 ALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVD 422

Query: 118 MHVKFSLLEEAQVLFDQM--PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
           M+ K   ++ A  ++DQ    +RN   W ++++ Y +  +  ++    + ML   +  ++
Sbjct: 423 MYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDV 482

Query: 176 FTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235
            T   ++    +L++L                   +AL+D+Y+K G +  A  VF+ M  
Sbjct: 483 LTMVTIV----NLLVL------------------ETALVDMYSKCGAITKARTVFDNMNG 520

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
           +++V WN++I G++++    EAL LY+ M + G   ++ T  ++L AC+   L+E G ++
Sbjct: 521 KNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRI 580

Query: 296 HVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQN 350
               ++ D+++         ++D+  + G LEDA     +M I+ +V +W  ++   A  
Sbjct: 581 FTS-MQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLG--ACR 637

Query: 351 GYSQEALKLFESMKVSRIKPN----YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI-- 404
            +    +    + ++  + P     Y+ +  +  A      VED     + M K  G+  
Sbjct: 638 VHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVED----IRQMMKMKGVKK 693

Query: 405 DPG 407
           DPG
Sbjct: 694 DPG 696


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/641 (38%), Positives = 368/641 (57%), Gaps = 41/641 (6%)

Query: 40  SSLLDDFT-RFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHN 98
           +SL+  +  R CY+     A+     M   G+R +SVT   +I  C     ++  + V  
Sbjct: 209 TSLIGGYAKRGCYKE----AVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCT 264

Query: 99  HVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
            +     E    +VN L++M++K   +++A+ +FD+  ++N+V + T++S Y    +  +
Sbjct: 265 CIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLARE 324

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALID 215
            L +L  ML+ G RP+  T  + + AC   D +   +  H  +++ G E    V +A+I+
Sbjct: 325 VLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIIN 384

Query: 216 IYAKLGE--------------------------LRNAEC-----VFNEMPTRDLVVWNSI 244
           +Y K G+                          +RN +      +F+ MP  DLV WN++
Sbjct: 385 MYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTM 444

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD- 303
           IG   Q S   EA+ L++ M+  G  AD+ T+  V  AC  L  L+L   +H ++ K D 
Sbjct: 445 IGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDI 504

Query: 304 -HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
             D+ L  AL+DM+ +CG  + AM VF++M+++DV +W+  I  +A  G    A++LF+ 
Sbjct: 505 HFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDE 564

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           M    IKP+ +  V +L A SH G VE GW+ F+SMK  YGI P   HY CM+DLLGRAG
Sbjct: 565 MLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAG 624

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
            L EA+ LI+ M  EP+ V W +LL AC+VH+N D+A  AA++I  LDP+  G ++LLSN
Sbjct: 625 LLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSN 684

Query: 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKH 542
           IYA++ +WD+VA+VR  ++ +G  K PG S IE+N +I  F   D SHP++  I   LK 
Sbjct: 685 IYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKE 744

Query: 543 LIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
           +  +L  +GY PD   VL D+  ++KE  +  HSEKLAI F L+S  QG  IR+ KNLRI
Sbjct: 745 ICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVAKNLRI 804

Query: 603 CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           C DCH+FAKL +K  ++ I++RD  R+H FQ G CSCGDYW
Sbjct: 805 CSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 214/441 (48%), Gaps = 40/441 (9%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+     + C G   D+ T+  ++  C    A+ E   VH  ++  GFE + F+ N L+
Sbjct: 122 KAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLI 181

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           + + +   ++  + +FD+M ERNVVSWT++I  Y       +A+ L   M+  G+RPN  
Sbjct: 182 HFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSV 241

Query: 177 TYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T   V+ AC  L  L+   Q+   I ++  E +  + +AL+D+Y K G +  A  +F+E 
Sbjct: 242 TMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDEC 301

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             ++LV++N+I+  + +     E L +   M + G   D+ T+ S + AC+ L  +  G 
Sbjct: 302 VDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGK 361

Query: 294 QVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQK---------------- 335
             H +VL+   +   N  NA+++MY KCG  E A  VF RM+ K                
Sbjct: 362 WCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNG 421

Query: 336 ---------------DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
                          D++SW+TMI  L Q    +EA++LF  M+   I  + +T+VGV  
Sbjct: 422 DMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVAS 481

Query: 381 ACSHAGFVE-DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD 439
           AC + G ++   W H    KK    D      + ++D+  R G  Q A+++ ++M  + D
Sbjct: 482 ACGYLGALDLAKWIHGYIKKKDIHFD--MHLGTALVDMFARCGDPQSAMQVFNKM-VKRD 538

Query: 440 AVTWRALLGACKVHRNTDLAI 460
              W A +GA  +  N   AI
Sbjct: 539 VSAWTAAIGAMAMEGNGTGAI 559



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 214/432 (49%), Gaps = 22/432 (5%)

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNMHVK---FSLLEEAQVLFDQMPERNVVSWT---- 144
           E K +H+ +   G       +  L++   +   F  LE AQ   +   E N +  T    
Sbjct: 48  ELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMF 107

Query: 145 -TMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIK 200
            ++I  +    +  KA+ +   ++  G  P+ FT+  VL AC     L    Q+H  I+K
Sbjct: 108 SSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVK 167

Query: 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNL 260
           +GFE D+FV ++LI  Y + GE+     VF++M  R++V W S+IGG+A+     EA++L
Sbjct: 168 MGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSL 227

Query: 261 YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCK 318
           +  M   G   +  T+  V+ AC  L  L+LG QV   +  L+ + + ++ NAL+DMY K
Sbjct: 228 FFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMK 287

Query: 319 CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
           CG+++ A  +F   + K+++ ++T++S   + G ++E L +   M     +P+ IT++  
Sbjct: 288 CGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSA 347

Query: 379 LFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           + ACS    V  G W H   ++   G++      + +I++  + GK + A ++   M   
Sbjct: 348 VSACSELDDVSCGKWCHGYVLRN--GLEGWDNVCNAIINMYMKCGKQEMACRVFDRM-LN 404

Query: 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDP-QDPGTYILLSNIYANSQKWDEVAEV 496
              V+W +L+      RN D+   +A KI +  P  D  ++  +         + E  E+
Sbjct: 405 KTRVSWNSLIAG--FVRNGDME--SAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIEL 460

Query: 497 RKTMRARGITKE 508
            + M++ GIT +
Sbjct: 461 FRVMQSEGITAD 472



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 115/217 (52%), Gaps = 14/217 (6%)

Query: 179 SAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC------VFNE 232
           +   + C ++  L+QLH  I K G        + LI    ++G   + E       +F E
Sbjct: 37  TGSFKKCKTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIE 96

Query: 233 ----MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
               M T    +++S+I GF+      +A+ +++++   G   D  T   VL ACT  A 
Sbjct: 97  DNGIMGTH--YMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAA 154

Query: 289 LELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           L  G QVH  ++K  ++ D+ + N+L+  Y +CG ++    VF +M +++V+SW+++I G
Sbjct: 155 LTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGG 214

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
            A+ G  +EA+ LF  M    I+PN +T+VGV+ AC+
Sbjct: 215 YAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACA 251


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/581 (40%), Positives = 362/581 (62%), Gaps = 6/581 (1%)

Query: 69  GVRADSVTYAE-LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           G+RA  V+  + L++      A  E    H  ++  G   +T   N+L+NM+ K  L+E 
Sbjct: 14  GIRATHVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVES 73

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A+ LFD+MP R++VSW TM+ ++      +KAL L + M +EG   + FT S+V+ AC +
Sbjct: 74  ARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAA 133

Query: 188 ---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
              +   +QLH   +K   +S+VFV +AL+D+YAK G +++A  VF  MP R  V W+S+
Sbjct: 134 KCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSM 193

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           + G+ QN   +EAL L+ R +  G   +Q T++S L AC   A L  G QV     K   
Sbjct: 194 VAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGI 253

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
             ++ + ++L+DMY KCG +E+A +VFS + +K+V+ W+ ++SG +++  S EA+  FE 
Sbjct: 254 GSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEK 313

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           M+   I PN IT + VL ACSH G VE G  +F  M + + + P   HYSCM+D+LGRAG
Sbjct: 314 MQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAG 373

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
            L EA   I  MP++  A  W +LL +C+++RN +LA  AAK +  ++P + G ++LLSN
Sbjct: 374 LLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSN 433

Query: 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKH 542
           IYA + +W+EVA  R  ++     KE G SWIE+  ++H+F V + +HP+I +I   L+ 
Sbjct: 434 IYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLED 493

Query: 543 LIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
           L+ ++  +GY   T + L D+E  +K++ +++HSEKLA+ FG+M L  G  IRI KNLRI
Sbjct: 494 LVGEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRI 553

Query: 603 CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           CGDCH+F KL + +  + I++RD  R+HHF++G CSCG++W
Sbjct: 554 CGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 594



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 152/285 (53%), Gaps = 6/285 (2%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D  +A+     MQ  G      T + ++  C A+  V E K +H   L    +   F+  
Sbjct: 101 DCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGT 160

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            LL+++ K  L+++A ++F+ MPER+ V+W++M++ Y   ++ ++AL L       G+  
Sbjct: 161 ALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEH 220

Query: 174 NMFT---YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           N FT     +   A  +LI  +Q+     K G  S++FV S+LID+YAK G +  A  VF
Sbjct: 221 NQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVF 280

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           + +  +++V+WN+I+ GF+++    EA+  +++M++ G   +  T  SVL AC+ L L+E
Sbjct: 281 SSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVE 340

Query: 291 LGTQ---VHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
            G +   + + V     +++  + ++D+  + G L +A     RM
Sbjct: 341 KGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRM 385


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/581 (40%), Positives = 362/581 (62%), Gaps = 6/581 (1%)

Query: 69  GVRADSVTYAE-LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           G+RA  V+  + L++      A  E    H  ++  G   +T   N+L+NM+ K  L+E 
Sbjct: 41  GIRATHVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVES 100

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A+ LFD+MP R++VSW TM+ ++      +KAL L + M +EG   + FT S+V+ AC +
Sbjct: 101 ARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAA 160

Query: 188 ---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
              +   +QLH   +K   +S+VFV +AL+D+YAK G +++A  VF  MP R  V W+S+
Sbjct: 161 KCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSM 220

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           + G+ QN   +EAL L+ R +  G   +Q T++S L AC   A L  G QV     K   
Sbjct: 221 VAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGI 280

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
             ++ + ++L+DMY KCG +E+A +VFS + +K+V+ W+ ++SG +++  S EA+  FE 
Sbjct: 281 GSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEK 340

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           M+   I PN IT + VL ACSH G VE G  +F  M + + + P   HYSCM+D+LGRAG
Sbjct: 341 MQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAG 400

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
            L EA   I  MP++  A  W +LL +C+++RN +LA  AAK +  ++P + G ++LLSN
Sbjct: 401 LLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSN 460

Query: 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKH 542
           IYA + +W+EVA  R  ++     KE G SWIE+  ++H+F V + +HP+I +I   L+ 
Sbjct: 461 IYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLED 520

Query: 543 LIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
           L+ ++  +GY   T + L D+E  +K++ +++HSEKLA+ FG+M L  G  IRI KNLRI
Sbjct: 521 LVGEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRI 580

Query: 603 CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           CGDCH+F KL + +  + I++RD  R+HHF++G CSCG++W
Sbjct: 581 CGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 621



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 152/285 (53%), Gaps = 6/285 (2%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D  +A+     MQ  G      T + ++  C A+  V E K +H   L    +   F+  
Sbjct: 128 DCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGT 187

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            LL+++ K  L+++A ++F+ MPER+ V+W++M++ Y   ++ ++AL L       G+  
Sbjct: 188 ALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEH 247

Query: 174 NMFT---YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           N FT     +   A  +LI  +Q+     K G  S++FV S+LID+YAK G +  A  VF
Sbjct: 248 NQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVF 307

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           + +  +++V+WN+I+ GF+++    EA+  +++M++ G   +  T  SVL AC+ L L+E
Sbjct: 308 SSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVE 367

Query: 291 LGTQ---VHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
            G +   + + V     +++  + ++D+  + G L +A     RM
Sbjct: 368 KGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRM 412


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/658 (36%), Positives = 369/658 (56%), Gaps = 71/658 (10%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++ M  M   G+     T   ++    A   +E  K VH+ ++  G      + N LL
Sbjct: 129 KAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLL 188

Query: 117 NM-------------------------------HVKFSLLEEAQVLFDQMPERNVVSWTT 145
           NM                               H++   ++ A   F+QM ER++V+W +
Sbjct: 189 NMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNS 248

Query: 146 MISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRAC---DSLIILRQLHCGIIKV 201
           MIS Y     + +AL++   MLR+  + P+ FT ++VL AC   + L I  Q+H  I+  
Sbjct: 249 MISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTT 308

Query: 202 GFESDVFVRSALIDIYA---------------------------------KLGELRNAEC 228
           GF+    V +ALI +Y+                                 KLG++  A+ 
Sbjct: 309 GFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKN 368

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           +F+ +  RD+V W ++I G+ Q+    EA+NL++ M       +  TL ++L   + LA 
Sbjct: 369 IFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLAS 428

Query: 289 LELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMIS 345
           L  G Q+H   +K    + + ++NAL+ MY K GS+  A   F  +  ++D +SW++MI 
Sbjct: 429 LGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMII 488

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
            LAQ+G+++EAL+LFE+M +  ++P++IT VGV  AC+HAG V  G  +F  MK    I 
Sbjct: 489 ALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKII 548

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
           P   HY+CM+DL GRAG LQEA + I +MP EPD VTW +LL AC+V++N DL   AA++
Sbjct: 549 PTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAER 608

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
           +L L+P++ G Y  L+N+Y+   KW+E A++RK+M+   + KE G SWIEV  ++HAF V
Sbjct: 609 LLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGV 668

Query: 526 ADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGL 585
            D  HPQ ++I   +K +  ++  +GY PDT  VL DLE E KE  +++HSEKLAI FGL
Sbjct: 669 EDGIHPQKNEIYITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGL 728

Query: 586 MSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +S     T+RI KNLR+C DCHT  K  +K+  + I++RD  R+HHF+DG CSC DYW
Sbjct: 729 ISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 126/472 (26%), Positives = 213/472 (45%), Gaps = 108/472 (22%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP---------------- 136
           A+LVH  V+  G     +L+N L+N++ K      A+ LFD+MP                
Sbjct: 33  AQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAK 92

Query: 137 ---------------ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
                          +R+ VSWTTMI  Y +     KA+ ++  M+REG+ P+ FT + V
Sbjct: 93  RGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNV 152

Query: 182 LRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN------- 231
           L +  +   L   +++H  I+K+G   +V V ++L+++YAK G+   A+ VF+       
Sbjct: 153 LASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDI 212

Query: 232 ------------------------EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR- 266
                                   +M  RD+V WNS+I G+ Q      AL+++ +M R 
Sbjct: 213 SSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRD 272

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLE- 323
           +  + D+ TL SVL AC  L  L +G Q+H H++    D+  I+ NAL+ MY +CG +E 
Sbjct: 273 SMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVET 332

Query: 324 --------------------------------DAMSVFSRMIQKDVISWSTMISGLAQNG 351
                                           +A ++F  +  +DV++W+ MI G  Q+G
Sbjct: 333 ARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHG 392

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMK--KFYGIDPGR 408
              EA+ LF SM     +PN  T+  +L   S    +  G   H  ++K  + Y +    
Sbjct: 393 LYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVS- 451

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
              + +I +  +AG +  A +    +  E D V+W +++ A   H + + A+
Sbjct: 452 ---NALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEAL 500



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 177/417 (42%), Gaps = 110/417 (26%)

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
           LEL   +L++ V  +   ++A L           +HC +IK G    V++ + L+++Y+K
Sbjct: 13  LELCTNLLQKSVNKSNGRFTAQL-----------VHCRVIKSGLVFSVYLMNNLMNVYSK 61

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR---------------- 263
            G   +A  +F+EMP R    WN+++  +A+  D+D +   + R                
Sbjct: 62  TGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGY 121

Query: 264 ---------------MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDL 306
                          M R G    Q TLT+VL +      LE G +VH  ++K     ++
Sbjct: 122 KNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNV 181

Query: 307 ILNNALLDMYCKC-------------------------------GSLEDAMSVFSRMIQK 335
            ++N+LL+MY KC                               G ++ AM+ F +M ++
Sbjct: 182 SVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAER 241

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESM-KVSRIKPNYITIVGVLFACS----------- 383
           D+++W++MISG  Q GY   AL +F  M + S + P+  T+  VL AC+           
Sbjct: 242 DIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQI 301

Query: 384 HAGFVEDGW-------NHFKSM-KKFYGIDPGR-------------EHYSCMIDLLGRAG 422
           H+  V  G+       N   SM  +  G++  R             E ++ ++D   + G
Sbjct: 302 HSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLG 361

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
            + EA K I +   + D V W A++   + H     AI   + ++  + Q P +Y L
Sbjct: 362 DMNEA-KNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVG-EEQRPNSYTL 416


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/629 (37%), Positives = 360/629 (57%), Gaps = 56/629 (8%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R+D ++   ++  C +  AV + K VH + +  G  P+ F+ N L++ + K  L+E A  
Sbjct: 262 RSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVK 321

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE--------------------- 169
           +F+ M  ++VVSW  M++ Y  +   + A EL   M +E                     
Sbjct: 322 VFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGC 381

Query: 170 --------------GVRPNMFTYSAVLRACDSLIILRQ---LHCGIIK----------VG 202
                         G  PN  T  +VL AC SL    Q   +H   +K           G
Sbjct: 382 SHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGG 441

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMP--TRDLVVWNSIIGGFAQNSDVDEALNL 260
            + D+ V +ALID+Y+K    + A  +F+++P   R++V W  +IGG AQ  D ++AL L
Sbjct: 442 EDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKL 501

Query: 261 YKRM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY----DHDLILNNALLD 314
           +  M  +  G A +  T++ +L AC  LA + +G Q+H +VL++         + N L+D
Sbjct: 502 FVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLID 561

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           MY KCG ++ A  VF  M QK  ISW++M++G   +G   EAL +F+ M+ +   P+ IT
Sbjct: 562 MYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDIT 621

Query: 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
            + VL+ACSH G V+ G ++F SM   YG+ P  EHY+C IDLL R+G+L +A + + +M
Sbjct: 622 FLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDM 681

Query: 435 PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494
           P EP AV W ALL AC+VH N +LA  A  K++ ++ ++ G+Y L+SNIYA + +W +VA
Sbjct: 682 PMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVA 741

Query: 495 EVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAP 554
            +R  M+  GI K PGCSW++  K   +F V D SHP   +I   L+ LI ++  +GY P
Sbjct: 742 RIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVP 801

Query: 555 DTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTA 614
           +TN+ L D++ E+K + +  HSEKLA+ +GL++ + G  IRI KNLR+CGDCH+     +
Sbjct: 802 ETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYIS 861

Query: 615 KMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           K+ +  IV+RDP R+HHF++G+CSCG YW
Sbjct: 862 KIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 132/455 (29%), Positives = 219/455 (48%), Gaps = 77/455 (16%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G R D  T   ++K C    +       H  +   GFE   F+ N L+ M+ +   LEEA
Sbjct: 150 GTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 209

Query: 129 QVLFDQMPER---NVVSWTTMISAYCDAKMNDKALEL---LIFMLRE---GVRPNMFTYS 179
            ++FD++ +R   +V+SW +++SA+  +     AL+L   +  ++ E     R ++ +  
Sbjct: 210 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 269

Query: 180 AVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
            +L AC SL  +   +++H   I+ G   DVFV +ALID YAK G + NA  VFN M  +
Sbjct: 270 NILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 329

Query: 237 DLVVWNSIIGGFAQNSDVD-----------------------------------EALNLY 261
           D+V WN+++ G++Q+ + +                                   EALNL+
Sbjct: 330 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 389

Query: 262 KRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK------------YDHDLILN 309
           ++M  +G   +  T+ SVL AC  L     GT++H + LK             D DL++ 
Sbjct: 390 RQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVY 449

Query: 310 NALLDMYCKCGSLEDAMSVFSRMI--QKDVISWSTMISGLAQNGYSQEALKLFESM--KV 365
           NAL+DMY KC S + A S+F  +   +++V++W+ MI G AQ G S +ALKLF  M  + 
Sbjct: 450 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 509

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDG-------WNHFKSMKKFYGIDPGREHYSCMIDLL 418
             + PN  TI  +L AC+H   +  G         H +     Y +       +C+ID+ 
Sbjct: 510 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVA------NCLIDMY 563

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            + G +  A  +   M  +  A++W +++    +H
Sbjct: 564 SKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGMH 597



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 134/482 (27%), Positives = 218/482 (45%), Gaps = 89/482 (18%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVT-------YAELIKCCLARHAVEEAKLVHNHVLSGG-- 104
           +LP+A+K +      G RA  +        +A L+K C + + V +   +H  +++ G  
Sbjct: 10  NLPKAVKPIGEWFLSGARAACIGVDVYPSHFASLLKECKSANTVHQ---IHQQIIASGLL 66

Query: 105 -------------FEPETFLVNILLNMHVKFSLL-----EEAQVLFDQMPERNVVSWTTM 146
                           E F+    L   V  S L     + A ++ +++     V W  +
Sbjct: 67  SLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLL 126

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGF 203
           I  +      D A+ +   MLR G RP+ FT   VL+AC  L   R     H  I   GF
Sbjct: 127 IREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGF 186

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTR---DLVVWNSIIGGFAQNSDVDEALNL 260
           ES+VF+ +AL+ +Y++ G L  A  +F+E+  R   D++ WNSI+    ++S+   AL+L
Sbjct: 187 ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 246

Query: 261 YKRM------KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNAL 312
           + +M      K     +D  ++ ++L AC  L  +    +VH + ++     D+ + NAL
Sbjct: 247 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNAL 306

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN---------------------- 350
           +D Y KCG +E+A+ VF+ M  KDV+SW+ M++G +Q+                      
Sbjct: 307 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDV 366

Query: 351 --------GYSQ-----EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFK 396
                   GYSQ     EAL LF  M  S   PN +TI+ VL AC+  G    G   H  
Sbjct: 367 VTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAY 426

Query: 397 SMKK--------FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP-DAVTWRALL 447
           S+K         F G D     Y+ +ID+  +    + A  +  ++P E  + VTW  ++
Sbjct: 427 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 486

Query: 448 GA 449
           G 
Sbjct: 487 GG 488



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 147/322 (45%), Gaps = 37/322 (11%)

Query: 171 VRPNMFTYSAVLRACDSLIILRQLHCGIIKVG---------------FESDVFVR----- 210
           V P+ F  +++L+ C S   + Q+H  II  G                 S+ F+      
Sbjct: 35  VYPSHF--ASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLG 92

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
           + ++  Y   G    A  V   +     V WN +I    +   +D A+N+  RM RAG  
Sbjct: 93  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 152

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSV 328
            D  TL  VL+AC  L     G+  H  +    ++ ++ + NAL+ MY +CGSLE+A  +
Sbjct: 153 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 212

Query: 329 FSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESM------KVSRIKPNYITIVGVL 379
           F  + Q+   DVISW++++S   ++  +  AL LF  M      K +  + + I+IV +L
Sbjct: 213 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 272

Query: 380 FACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP 438
            AC     V      H  +++   G  P     + +ID   + G ++ AVK+ + M ++ 
Sbjct: 273 PACGSLKAVPQTKEVHGNAIRN--GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK- 329

Query: 439 DAVTWRALLGACKVHRNTDLAI 460
           D V+W A++       N + A 
Sbjct: 330 DVVSWNAMVAGYSQSGNFEAAF 351



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 109/234 (46%), Gaps = 24/234 (10%)

Query: 68  HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGG-FEPETFLV-NILLNMHVKFSLL 125
           +GV  ++ T + ++  C    A+   K +H +VL    +E   + V N L++M+ K   +
Sbjct: 510 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDV 569

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
           + A+ +FD M +++ +SWT+M++ Y       +AL++   M + G  P+  T+  VL AC
Sbjct: 570 DTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYAC 629

Query: 186 DSLIILRQLHCGIIKVGF------ESDVFVR------SALIDIYAKLGELRNAECVFNEM 233
                    HCG++  G        +D  +       +  ID+ A+ G L  A     +M
Sbjct: 630 S--------HCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDM 681

Query: 234 PTRDL-VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS-TLTSVLRACTG 285
           P     VVW +++     +S+V+ A +   ++       D S TL S + A  G
Sbjct: 682 PMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAG 735


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/639 (36%), Positives = 365/639 (57%), Gaps = 71/639 (11%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           T   ++  C A  +    K VH+ V+  G      + N LLNM+ K   L+ A+V+FD+M
Sbjct: 109 TLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRM 168

Query: 136 -------------------------------PERNVVSWTTMISAYCDAKMNDKALELLI 164
                                           ER++VSW +MI+       +++AL+   
Sbjct: 169 KLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFS 228

Query: 165 FMLRE-GVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFES--------------- 205
            +L++  ++P+ F+ ++ L AC +L  L   +Q+H  I++  F++               
Sbjct: 229 SILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKS 288

Query: 206 ------------------DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
                             DV   +AL++ Y KLG++  A  +FN +   D+V W ++I G
Sbjct: 289 GGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVG 348

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI 307
           + QN   ++A+ ++K M   G   +  TL ++L A + +  L  G Q+H   ++    L 
Sbjct: 349 YVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALS 408

Query: 308 --LNNALLDMYCKCGSLEDAMSVFSRMIQ-KDVISWSTMISGLAQNGYSQEALKLFESMK 364
             + NAL  MY K GS+  A  VF+ + Q +D +SW++MI  LAQ+G  +EA++LFE M 
Sbjct: 409 PSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQML 468

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
              IKP++IT VGVL AC+H G VE G ++F  MK  + IDP   HY+CM+DL GRAG L
Sbjct: 469 TLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLL 528

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484
           QEA K +  MP EPD + W +LL +CKV++N DLA  AA+++L ++P + G Y  L+N+Y
Sbjct: 529 QEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVY 588

Query: 485 ANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLI 544
           ++  KWD+ A++RK M+ARG+ KE G SW+++  + H F V D  HPQ D+I K +  + 
Sbjct: 589 SSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIW 648

Query: 545 QKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICG 604
           +++  +G+APDT  VL DLE E K+  ++YHSEKLAI FG++S  +  T+RI KNLR+C 
Sbjct: 649 KEIKKMGFAPDTESVLHDLEVEVKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLRVCN 708

Query: 605 DCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           DCH   K  +K+ ++ I++RD  R+HHF+DG+CSC DYW
Sbjct: 709 DCHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 207/442 (46%), Gaps = 74/442 (16%)

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
           TF  N +L+ + K   LE+A  +FD +P R+ VSWTT+I  Y      + A+++ + M++
Sbjct: 41  TFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVK 100

Query: 169 EGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           + V P  FT + VL +C    S  I +++H  ++K+G  + V V ++L+++YAK G+L+ 
Sbjct: 101 DKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKM 160

Query: 226 AECVFNEM-------------------------------PTRDLVVWNSIIGGFAQNSDV 254
           A+ VF+ M                                 RD+V WNS+I G  Q+   
Sbjct: 161 AKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFD 220

Query: 255 DEALNLYKR-MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNA 311
           +EAL  +   +K      D+ +L S L AC  L  L  G Q+H ++++  +D    + NA
Sbjct: 221 NEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNA 280

Query: 312 LLDMYCKCGSLE---------------------------------DAMSVFSRMIQKDVI 338
           L+ MY K G +E                                  A  +F+ +   DV+
Sbjct: 281 LISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVV 340

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKS 397
           +W+ MI G  QNG + +A+++F++M     +PN  T+  +L A S    +  G   H  +
Sbjct: 341 AWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASA 400

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457
           ++    + P   +   +  +  +AG +  A K+ + +    D V+W +++ A   H   +
Sbjct: 401 IRSGEALSPSVGN--ALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGE 458

Query: 458 LAICAAKKILNLDPQ-DPGTYI 478
            AI   +++L L  + D  TY+
Sbjct: 459 EAIELFEQMLTLGIKPDHITYV 480



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 179/411 (43%), Gaps = 99/411 (24%)

Query: 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV--- 254
           ++K+G    V++ + L+++YAK G   +A  +FNEMP +    WN+I+ G+A+   +   
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 255 ----------------------------DEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
                                       ++A+ ++  M +      Q TLT+VL +C   
Sbjct: 61  HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAAT 120

Query: 287 ALLELGTQVHVHVLKYD-HDLI-LNNALLDMYCKCGSLEDAMSVFSRM------------ 332
               +G +VH  V+K   H  + + N+LL+MY K G L+ A  VF RM            
Sbjct: 121 GSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMI 180

Query: 333 -------------------IQKDVISWSTMISGLAQNGYSQEALKLFES-MKVSRIKPNY 372
                               ++D++SW++MI+G  Q+G+  EAL+ F S +K + +KP+ 
Sbjct: 181 SLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDR 240

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYG------IDPGREHYSCMIDLLGRAGKLQE 426
            ++   L AC++   +  G       K+ +G       D      + +I +  ++G ++ 
Sbjct: 241 FSLASALSACANLEKLSFG-------KQIHGYIVRTMFDASGAVGNALISMYAKSGGVEI 293

Query: 427 AVKLIHEMPY-EPDAVTWRALL-GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI- 483
           A ++I +    + D + + ALL G  K+       I  A++I N   +DP      + I 
Sbjct: 294 ARRIIEQSGISDLDVIAFTALLNGYVKLGD-----ITPARQIFN-SLKDPDVVAWTAMIV 347

Query: 484 -YANSQKWDEVAEVRKTMRARG-----------ITKEPGCSWIEVNKQIHA 522
            Y  +   ++  EV KTM + G           ++     + +   KQIHA
Sbjct: 348 GYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHA 398


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/629 (37%), Positives = 360/629 (57%), Gaps = 56/629 (8%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R+D ++   ++  C +  AV + K VH + +  G  P+ F+ N L++ + K  L+E A  
Sbjct: 269 RSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVK 328

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE--------------------- 169
           +F+ M  ++VVSW  M++ Y  +   + A EL   M +E                     
Sbjct: 329 VFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGC 388

Query: 170 --------------GVRPNMFTYSAVLRACDSLIILRQ---LHCGIIK----------VG 202
                         G  PN  T  +VL AC SL    Q   +H   +K           G
Sbjct: 389 SHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGG 448

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMP--TRDLVVWNSIIGGFAQNSDVDEALNL 260
            + D+ V +ALID+Y+K    + A  +F+++P   R++V W  +IGG AQ  D ++AL L
Sbjct: 449 EDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKL 508

Query: 261 YKRM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY----DHDLILNNALLD 314
           +  M  +  G A +  T++ +L AC  LA + +G Q+H +VL++         + N L+D
Sbjct: 509 FVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLID 568

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           MY KCG ++ A  VF  M QK  ISW++M++G   +G   EAL +F+ M+ +   P+ IT
Sbjct: 569 MYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDIT 628

Query: 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
            + VL+ACSH G V+ G ++F SM   YG+ P  EHY+C IDLL R+G+L +A + + +M
Sbjct: 629 FLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDM 688

Query: 435 PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494
           P EP AV W ALL AC+VH N +LA  A  K++ ++ ++ G+Y L+SNIYA + +W +VA
Sbjct: 689 PMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVA 748

Query: 495 EVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAP 554
            +R  M+  GI K PGCSW++  K   +F V D SHP   +I   L+ LI ++  +GY P
Sbjct: 749 RIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVP 808

Query: 555 DTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTA 614
           +TN+ L D++ E+K + +  HSEKLA+ +GL++ + G  IRI KNLR+CGDCH+     +
Sbjct: 809 ETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYIS 868

Query: 615 KMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           K+ +  IV+RDP R+HHF++G+CSCG YW
Sbjct: 869 KIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 132/455 (29%), Positives = 219/455 (48%), Gaps = 77/455 (16%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G R D  T   ++K C    +       H  +   GFE   F+ N L+ M+ +   LEEA
Sbjct: 157 GTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 216

Query: 129 QVLFDQMPER---NVVSWTTMISAYCDAKMNDKALEL---LIFMLRE---GVRPNMFTYS 179
            ++FD++ +R   +V+SW +++SA+  +     AL+L   +  ++ E     R ++ +  
Sbjct: 217 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 276

Query: 180 AVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
            +L AC SL  +   +++H   I+ G   DVFV +ALID YAK G + NA  VFN M  +
Sbjct: 277 NILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 336

Query: 237 DLVVWNSIIGGFAQNSDVD-----------------------------------EALNLY 261
           D+V WN+++ G++Q+ + +                                   EALNL+
Sbjct: 337 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 396

Query: 262 KRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK------------YDHDLILN 309
           ++M  +G   +  T+ SVL AC  L     GT++H + LK             D DL++ 
Sbjct: 397 RQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVY 456

Query: 310 NALLDMYCKCGSLEDAMSVFSRMI--QKDVISWSTMISGLAQNGYSQEALKLFESM--KV 365
           NAL+DMY KC S + A S+F  +   +++V++W+ MI G AQ G S +ALKLF  M  + 
Sbjct: 457 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 516

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDG-------WNHFKSMKKFYGIDPGREHYSCMIDLL 418
             + PN  TI  +L AC+H   +  G         H +     Y +       +C+ID+ 
Sbjct: 517 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVA------NCLIDMY 570

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            + G +  A  +   M  +  A++W +++    +H
Sbjct: 571 SKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGMH 604



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 134/482 (27%), Positives = 218/482 (45%), Gaps = 89/482 (18%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVT-------YAELIKCCLARHAVEEAKLVHNHVLSGG-- 104
           +LP+A+K +      G RA  +        +A L+K C + + V +   +H  +++ G  
Sbjct: 17  NLPKAVKPIGEWFLSGARAACIGVDVYPSHFASLLKECKSANTVHQ---IHQQIIASGLL 73

Query: 105 -------------FEPETFLVNILLNMHVKFSLL-----EEAQVLFDQMPERNVVSWTTM 146
                           E F+    L   V  S L     + A ++ +++     V W  +
Sbjct: 74  SLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLL 133

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGF 203
           I  +      D A+ +   MLR G RP+ FT   VL+AC  L   R     H  I   GF
Sbjct: 134 IREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGF 193

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTR---DLVVWNSIIGGFAQNSDVDEALNL 260
           ES+VF+ +AL+ +Y++ G L  A  +F+E+  R   D++ WNSI+    ++S+   AL+L
Sbjct: 194 ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 253

Query: 261 YKRM------KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNAL 312
           + +M      K     +D  ++ ++L AC  L  +    +VH + ++     D+ + NAL
Sbjct: 254 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNAL 313

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN---------------------- 350
           +D Y KCG +E+A+ VF+ M  KDV+SW+ M++G +Q+                      
Sbjct: 314 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDV 373

Query: 351 --------GYSQ-----EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFK 396
                   GYSQ     EAL LF  M  S   PN +TI+ VL AC+  G    G   H  
Sbjct: 374 VTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAY 433

Query: 397 SMKK--------FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP-DAVTWRALL 447
           S+K         F G D     Y+ +ID+  +    + A  +  ++P E  + VTW  ++
Sbjct: 434 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 493

Query: 448 GA 449
           G 
Sbjct: 494 GG 495



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 147/322 (45%), Gaps = 37/322 (11%)

Query: 171 VRPNMFTYSAVLRACDSLIILRQLHCGIIKVG---------------FESDVFVR----- 210
           V P+ F  +++L+ C S   + Q+H  II  G                 S+ F+      
Sbjct: 42  VYPSHF--ASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLG 99

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
           + ++  Y   G    A  V   +     V WN +I    +   +D A+N+  RM RAG  
Sbjct: 100 TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 159

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSV 328
            D  TL  VL+AC  L     G+  H  +    ++ ++ + NAL+ MY +CGSLE+A  +
Sbjct: 160 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 219

Query: 329 FSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESM------KVSRIKPNYITIVGVL 379
           F  + Q+   DVISW++++S   ++  +  AL LF  M      K +  + + I+IV +L
Sbjct: 220 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 279

Query: 380 FACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP 438
            AC     V      H  +++   G  P     + +ID   + G ++ AVK+ + M ++ 
Sbjct: 280 PACGSLKAVPQTKEVHGNAIRN--GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK- 336

Query: 439 DAVTWRALLGACKVHRNTDLAI 460
           D V+W A++       N + A 
Sbjct: 337 DVVSWNAMVAGYSQSGNFEAAF 358



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 109/234 (46%), Gaps = 24/234 (10%)

Query: 68  HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGG-FEPETFLV-NILLNMHVKFSLL 125
           +GV  ++ T + ++  C    A+   K +H +VL    +E   + V N L++M+ K   +
Sbjct: 517 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDV 576

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
           + A+ +FD M +++ +SWT+M++ Y       +AL++   M + G  P+  T+  VL AC
Sbjct: 577 DTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYAC 636

Query: 186 DSLIILRQLHCGIIKVGF------ESDVFVR------SALIDIYAKLGELRNAECVFNEM 233
                    HCG++  G        +D  +       +  ID+ A+ G L  A     +M
Sbjct: 637 S--------HCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDM 688

Query: 234 PTRDL-VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS-TLTSVLRACTG 285
           P     VVW +++     +S+V+ A +   ++       D S TL S + A  G
Sbjct: 689 PMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAG 742


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/541 (40%), Positives = 338/541 (62%), Gaps = 11/541 (2%)

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           + N L+   ++  ++E+A+ LF  M +R+ ++WTTM++      +  +AL++   M  EG
Sbjct: 214 MYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEG 273

Query: 171 VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
           V  + +T+ ++L AC +L      +Q+H  I +  +E +VFV SAL+D+Y+K   +R AE
Sbjct: 274 VGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAE 333

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            VF  M  R+++ W ++I G+ QN+  +EA+  +  M+  G   D  TL SV+ +C  LA
Sbjct: 334 AVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLA 393

Query: 288 LLELGTQVHV-----HVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            LE G Q H       +++Y   + ++NAL+ +Y KCGS+EDA  +F  M   D +SW+ 
Sbjct: 394 SLEEGAQFHCLALVSGLMRY---ITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTA 450

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           +++G AQ G ++E + LFE M V+ +KP+ +T +GVL ACS AG VE G ++F SM+K +
Sbjct: 451 LVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDH 510

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            I P  +HY+CMIDL  R+G+ +EA + I +MP+ PDA  W  LL +C++  N ++   A
Sbjct: 511 DIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWA 570

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A+ +L  DPQ+P +Y+LL +++A   +W EVA +R+ MR R + KEPGCSWI+   ++H 
Sbjct: 571 AENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHI 630

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F+  D SHP   +I + L+ L  K+   GY PD + VL D+    K   I +HSEKLAI 
Sbjct: 631 FSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIA 690

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           FGL+ + Q   IRI KNLR+C DCH   K  +K+  + I++RD +R+H F DG CSCGD+
Sbjct: 691 FGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDF 750

Query: 643 W 643
           W
Sbjct: 751 W 751



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 119/379 (31%), Positives = 201/379 (53%), Gaps = 39/379 (10%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           +P  F  N LL+      L+ + + LF  MPER+ VS+  +I+ +       ++++L   
Sbjct: 76  DPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRA 135

Query: 166 MLR-EGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
           +LR E VRP   T SA++    +L    +   +HC ++++GF +  FV S L+D+YAK+G
Sbjct: 136 LLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMG 195

Query: 222 ELRNAECVFNEMPT-------------------------------RDLVVWNSIIGGFAQ 250
            +R+A  VF EM                                 RD + W +++ G  Q
Sbjct: 196 LIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQ 255

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
           N    EAL++++RM+  G   DQ T  S+L AC  LA  E G Q+H ++ +  Y+ ++ +
Sbjct: 256 NGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFV 315

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            +AL+DMY KC S+  A +VF RM  +++ISW+ MI G  QN  S+EA++ F  M++  I
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
           KP+  T+  V+ +C++   +E+G   F  +    G+       + ++ L G+ G +++A 
Sbjct: 376 KPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAH 434

Query: 429 KLIHEMPYEPDAVTWRALL 447
           +L  EM +  D V+W AL+
Sbjct: 435 RLFDEMSFH-DQVSWTALV 452



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 153/302 (50%), Gaps = 9/302 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M+  GV  D  T+  ++  C A  A EE K +H ++    +E   F+ + L++
Sbjct: 262 ALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVD 321

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +  A+ +F +M  RN++SWT MI  Y     +++A+     M  +G++P+ FT
Sbjct: 322 MYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFT 381

Query: 178 YSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             +V+ +C +L  L    Q HC  +  G    + V +AL+ +Y K G + +A  +F+EM 
Sbjct: 382 LGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMS 441

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             D V W +++ G+AQ     E ++L+++M   G   D  T   VL AC+   L+E G  
Sbjct: 442 FHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCD 501

Query: 295 VHVHVLKYDHDLILNN----ALLDMYCKCGSLEDAMSVFSRMIQK-DVISWSTMISGLAQ 349
            +   ++ DHD++  +     ++D+Y + G  ++A     +M    D   W+T++S    
Sbjct: 502 -YFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRL 560

Query: 350 NG 351
            G
Sbjct: 561 RG 562


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/503 (42%), Positives = 322/503 (64%), Gaps = 5/503 (0%)

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVG 202
           M+  Y       KALEL   + + G + +  T +   +AC  L++L   +Q+H   IK G
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
           F+SD+ V S ++D+Y K G++ NA  VFN +   D V W S+I G   N + D+AL +Y 
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCG 320
           RM+++    D+ T  ++++A + +  LE G Q+H +V+K D   D  +  +L+DMY KCG
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCG 180

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
           ++EDA  +F +M  +++  W+ M+ GLAQ+G ++EA+ LF+SMK   I+P+ ++ +G+L 
Sbjct: 181 NIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILS 240

Query: 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
           ACSHAG   + + +  SM   YGI+P  EHYSC++D LGRAG +QEA K+I  MP++  A
Sbjct: 241 ACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASA 300

Query: 441 VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTM 500
              RALLGAC++  + +     A ++  L+P D   Y+LLSNIYA + +WD+V + RK M
Sbjct: 301 SINRALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMM 360

Query: 501 RARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVL 560
           + + + K+PG SWI+V   +H F V D SHPQ D I   ++ +++ +   GY PDT +VL
Sbjct: 361 KRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVL 420

Query: 561 QDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQT 620
            D+E E+KE S+ YHSEKLAI +GL+S     TIR+ KNLR+CGDCH   K  +K+  + 
Sbjct: 421 LDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFERE 480

Query: 621 IVIRDPIRYHHFQDGNCSCGDYW 643
           IV+RD  R+HHF+DG CSCGDYW
Sbjct: 481 IVLRDANRFHHFRDGVCSCGDYW 503


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/694 (36%), Positives = 381/694 (54%), Gaps = 88/694 (12%)

Query: 28  PVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLAR 87
           PV+  +T+  N+       T F +  D   A+     M+  G + D  TYA ++   LA 
Sbjct: 107 PVSMRDTVMYNAM-----ITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVL-AGLAL 160

Query: 88  HAVEEAKLVHNHV--LSGGFEPETFLVNILLNMHVKF----SLLEEAQVLFDQMPERNVV 141
              +E + V  H   L  G    T + N L++++ +     SLL  A+ +FD +PE++  
Sbjct: 161 VVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDER 220

Query: 142 SWTTM--------------------------------ISAYCDAKMNDKALELLIFMLRE 169
           SWTTM                                IS Y +  +  +ALE++  M+  
Sbjct: 221 SWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSS 280

Query: 170 GVRPNMFTYSAVLRACDSLIIL---RQLHCGIIK---VGFESDVFVRSALIDIYAKLGEL 223
           G+  + FTY +V+RAC +  +L   +Q+H  +++     F  D    ++L+ +Y K G+ 
Sbjct: 281 GIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHFD----NSLVTLYYKCGKF 336

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGF-------------------------------AQNS 252
             A  +F +MP +DLV WN+++ G+                               A+N 
Sbjct: 337 NEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENG 396

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNN 310
             +E L L+  MKR GF       +  +++C  L     G Q H  ++K  +D  L   N
Sbjct: 397 FGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGN 456

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           AL+ MY KCG +E+A  VF  M   D +SW+ +I+ L Q+G+  EA+ ++E M    I+P
Sbjct: 457 ALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRP 516

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           + IT + VL ACSHAG V+ G  +F SM+  Y I PG +HY+ +IDLL R+GK  EA  +
Sbjct: 517 DRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESI 576

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
           I  +P++P A  W ALL  C+VH N +L I AA K+  L P+  GTY+LLSN+YA + +W
Sbjct: 577 IESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQW 636

Query: 491 DEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGV 550
           +EVA VRK MR RG+ KE  CSWIE+  Q+H F V D+SHP+ + + K+L+ L +++  +
Sbjct: 637 EEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRL 696

Query: 551 GYAPDTNYVLQDLEGE-QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
           GY PDT++VL D+E +  KED +  HSEK+A+ FGLM L  G TIRI KNLR CGDCH F
Sbjct: 697 GYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNF 756

Query: 610 AKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +  +K+  + I++RD  R+HHF++G CSCG++W
Sbjct: 757 FRFLSKVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 137/492 (27%), Positives = 226/492 (45%), Gaps = 111/492 (22%)

Query: 70  VRADSVTYAELIKCCLA--RHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           VRA +  YA  ++ CL   R +++ A+ VH ++++ GF+P   ++N L++++ K S L+ 
Sbjct: 8   VRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDY 67

Query: 128 AQVLFDQMPERNVVSWTTMISAYC--------------------DAKM-----------N 156
           A+ LFD++ E + ++ TTM+S YC                    D  M           N
Sbjct: 68  ARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNN 127

Query: 157 D--KALELLIFMLREGVRPNMFTYSAVLRACDSLII-----LRQLHCGIIKVGFESDVFV 209
           D   A+ L   M  EG +P+ FTY++VL A  +L++       Q H   +K G      V
Sbjct: 128 DGYSAINLFCKMKHEGFKPDDFTYASVL-AGLALVVDDEKQCVQFHAAALKSGAGYVTSV 186

Query: 210 RSALIDIYAKLGE----LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD---------- 255
            +AL+ +Y++       L +A  VF+++P +D   W +++ G+ +N   D          
Sbjct: 187 SNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMD 246

Query: 256 ----------------------EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
                                 EAL + +RM  +G   D+ T  SV+RAC    LL+LG 
Sbjct: 247 ENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGK 306

Query: 294 QVHVHVLKY-DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST---------- 342
           QVH +VL+  D     +N+L+ +Y KCG   +A ++F +M  KD++SW+           
Sbjct: 307 QVHAYVLRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGH 366

Query: 343 ---------------------MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
                                MISGLA+NG+ +E LKLF  MK    +P      G + +
Sbjct: 367 IGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKS 426

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
           C+  G   +G      + K  G D      + +I +  + G ++EA ++   MP   D+V
Sbjct: 427 CAVLGAYCNGQQFHAQLVKI-GFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPC-LDSV 484

Query: 442 TWRALLGACKVH 453
           +W AL+ A   H
Sbjct: 485 SWNALIAALGQH 496



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 98/250 (39%), Gaps = 48/250 (19%)

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSR--MIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           D I    ++  YC  G +  A SVF    +  +D + ++ MI+G + N     A+ LF  
Sbjct: 79  DKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCK 138

Query: 363 MKVSRIKPNYITIVGVLFACS------------HAGFVEDGWNHFKSMKKFYGIDPGREH 410
           MK    KP+  T   VL   +            HA  ++ G  +  S+            
Sbjct: 139 MKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVS----------- 187

Query: 411 YSCMIDLLGRAGK----LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
            + ++ +  R       L  A K+  ++P E D  +W  ++     +   DL     K++
Sbjct: 188 -NALVSVYSRCASSPSLLHSARKVFDDIP-EKDERSWTTMMTGYVKNGCFDL----GKEL 241

Query: 467 LNLDPQDPG--TYILLSNIYANSQKWDEVAEVRKTMRARGITKEP--------GCS---W 513
           L    ++     Y  + + Y N   + E  E+ + M + GI  +          C+    
Sbjct: 242 LKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARL 301

Query: 514 IEVNKQIHAF 523
           +++ KQ+HA+
Sbjct: 302 LQLGKQVHAY 311


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/580 (39%), Positives = 342/580 (58%), Gaps = 6/580 (1%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           VR DS T A  ++       +   + VH + +  G      +V  L++++ K   ++ AQ
Sbjct: 208 VRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQ 267

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL- 188
            LFD+M   ++V++  +IS Y    M + ++EL   +   G RPN  T  AV+       
Sbjct: 268 FLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFG 327

Query: 189 --IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
             ++ R LH  ++K   ++D  V +AL  +Y +L ++ +A  +F+ M  + +  WN++I 
Sbjct: 328 HELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMIS 387

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDH 304
           G+AQN   + A+ L++ M+      +  T++S L AC  L  L LG  VH  +   K + 
Sbjct: 388 GYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLEL 447

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           ++ +  AL+DMY KCGS+ +A S+F RM  K+V+SW+ MISG   +G   EALKL++ M 
Sbjct: 448 NVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDML 507

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
            +RI P   T + V++ACSH G V++G   F+ M   Y I PG EH +CM+DLLGRAGKL
Sbjct: 508 DARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKL 567

Query: 425 QEAVKLIHEMPYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
            EA++LI E P        W ALLGAC VH+N+DLA  A++K+  LD ++ G Y+LLSN+
Sbjct: 568 NEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNL 627

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           Y + + + E A VR+  + R + K PGC+ IE+  + H F   D  HPQ + I  +L+ L
Sbjct: 628 YTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERL 687

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
             K++  GY P T   L D+E E+KE  ++ HSEKLAI FGL+S   G  IRI KNLR+C
Sbjct: 688 TAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVC 747

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            DCH   K  +K+  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 748 LDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 121/417 (29%), Positives = 220/417 (52%), Gaps = 17/417 (4%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
           A+ +H   ++ G+  +TF+ + L  ++ K S  ++A+ +FD +P  + + W T+++    
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLP- 191

Query: 153 AKMNDKALELLIFMLREG-VRPNMFTYSAVLRA---CDSLIILRQLHCGIIKVGFESDVF 208
                +ALE  + M+  G VRP+  T ++ LRA      + + R +H   +K G      
Sbjct: 192 ---GSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEH 248

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           V + L+ +Y+K G++ +A+ +F+ M   DLV +N++I G++ N  V+ ++ L+K +  +G
Sbjct: 249 VVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASG 308

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAM 326
           +  + STL +V+   +      L   +H  V+K   D D +++ AL  +YC+   +E A 
Sbjct: 309 WRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESAR 368

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
           S+F  M++K + SW+ MISG AQNG ++ A+ LF+ M+   ++PN ITI   L AC+H G
Sbjct: 369 SIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLG 428

Query: 387 FVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
            +  G W H    K+   ++      + +ID+  + G + EA  +   M  + + V+W A
Sbjct: 429 ALSLGKWVHRIISKE--KLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNK-NVVSWNA 485

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW--DEVAEVRKTM 500
           ++    +H     A+   K +L+     P +   LS IYA S     DE  +V + M
Sbjct: 486 MISGYGLHGQGAEALKLYKDMLDARIL-PTSSTFLSVIYACSHGGLVDEGQKVFRVM 541



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 114/277 (41%), Gaps = 45/277 (16%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     MQ   V+ + +T +  +  C    A+   K VH  +     E   +++  L++
Sbjct: 398 AVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALID 457

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   + EA+ +FD+M  +NVVSW  MIS Y       +AL+L   ML   + P   T
Sbjct: 458 MYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSST 517

Query: 178 YSAVLRACDSLIILRQLHCGIIKVG------------FESDVFVRSALIDIYAKLGELRN 225
           + +V+ AC         H G++  G                +   + ++D+  + G+L  
Sbjct: 518 FLSVIYACS--------HGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNE 569

Query: 226 AECVFNEMPTRDL--VVWNSIIGG--FAQNSDVDEAL-------------------NLYK 262
           A  + +E P   +   VW +++G     +NSD+ +                     NLY 
Sbjct: 570 ALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYT 629

Query: 263 RMKRAGFAA--DQSTLTSVLRACTGLALLELGTQVHV 297
             K    AA   Q   T  L    G  L+E+G + HV
Sbjct: 630 SKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHV 666


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/630 (38%), Positives = 366/630 (58%), Gaps = 18/630 (2%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAEL 80
           F+ T  P +   NT+ R   S  D F      RD   A+    +M+ HG   D+ T+  +
Sbjct: 58  FAQTPHPNIFLYNTLIRGMVSN-DAF------RD---AVSVYASMRQHGFAPDNFTFPFV 107

Query: 81  IKCCLA-RHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139
           +K C    H       +H+ V+  GF+ + F+   L+ ++ K   L +A+ +FD++PE+N
Sbjct: 108 LKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKN 167

Query: 140 VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHC 196
           VVSWT +I  Y ++    +AL L   +L  G+RP+ FT   +L AC  +  L   R +  
Sbjct: 168 VVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDG 227

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
            + + G   +VFV ++L+D+YAK G +  A  VF+ M  +D+V W+++I G+A N    E
Sbjct: 228 YMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKE 287

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL---ILNNALL 313
           AL+++  M+R     D   +  V  AC+ L  LELG      ++  D  L   +L  AL+
Sbjct: 288 ALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWAR-GLMDGDEFLSNPVLGTALI 346

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           D Y KCGS+  A  VF  M +KD + ++ +ISGLA  G+   A  +F  M    ++P+  
Sbjct: 347 DFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGN 406

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
           T VG+L  C+HAG V+DG  +F  M   + + P  EHY CM+DL  RAG L EA  LI  
Sbjct: 407 TFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRS 466

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
           MP E +++ W ALLG C++H++T LA    K+++ L+P + G Y+LLSNIY+ S +WDE 
Sbjct: 467 MPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEA 526

Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYA 553
            ++R ++  +G+ K PGCSW+EV+  +H F V D+SHP   KI + L+ L + L   GY 
Sbjct: 527 EKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYN 586

Query: 554 PDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLT 613
           P T +VL D+E E+KE  +  HSEKLA+ F L+S      IR+ KNLR+CGDCH   KL 
Sbjct: 587 PTTEFVLFDVEEEEKEYFLGCHSEKLAVAFALISTGAKDVIRVVKNLRVCGDCHEAIKLV 646

Query: 614 AKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +K+  + I++RD  R+HHF +G+CSC DYW
Sbjct: 647 SKVTGREIIVRDNNRFHHFTEGSCSCRDYW 676



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 215/418 (51%), Gaps = 24/418 (5%)

Query: 78  AELIKC-CLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           +EL KC      ++ +AK  H  +L  G   +T+L+N+LL   + F+  + A V+F Q P
Sbjct: 3   SELKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTP 62

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI----ILR 192
             N+  + T+I           A+ +   M + G  P+ FT+  VL+AC  L     +  
Sbjct: 63  HPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGL 122

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            LH  +IK GF+ DVFV++ L+ +Y+K G L +A  VF+E+P +++V W +II G+ ++ 
Sbjct: 123 SLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESG 182

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNN 310
              EAL L++ +   G   D  TL  +L AC+ +  L  G  +  ++ +     ++ +  
Sbjct: 183 CFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVAT 242

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           +L+DMY KCGS+E+A  VF  M++KDV+ WS +I G A NG  +EAL +F  M+   ++P
Sbjct: 243 SLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRP 302

Query: 371 NYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYS------CMIDLLGRAGK 423
           +   +VGV  ACS  G +E G W          G+  G E  S       +ID   + G 
Sbjct: 303 DCYAMVGVFSACSRLGALELGNWAR--------GLMDGDEFLSNPVLGTALIDFYAKCGS 354

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ-DPGTYILL 480
           + +A ++   M    D V + A++    +  +   A     +++ +  Q D  T++ L
Sbjct: 355 VAQAKEVFKGMR-RKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGL 411


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/518 (42%), Positives = 328/518 (63%), Gaps = 5/518 (0%)

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           +F  +   NV +W T+I  Y ++     A      M+   V P+  TY  +L+A    + 
Sbjct: 74  VFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLN 133

Query: 191 LRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           +R+   +H   I+ GFES VFV+++L+ IYA  G+  +A  VF  M  RDLV WNS+I G
Sbjct: 134 VREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMING 193

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHD 305
           FA N   +EAL L++ M   G   D  T+ S+L A   L  LELG +VHV++LK     +
Sbjct: 194 FALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKN 253

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
             + N+LLD+Y KCG++ +A  VFS M +++ +SW+++I GLA NG+ +EAL+LF+ M+ 
Sbjct: 254 SHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEG 313

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
             + P+ IT VGVL+ACSH G +++G+ +F+ MK+  GI P  EHY CM+DLL RAG ++
Sbjct: 314 QGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVK 373

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           +A + I  MP +P+AV WR LLGAC +H +  L   A   +LNL+P+  G Y+LLSN+YA
Sbjct: 374 QAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYA 433

Query: 486 NSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQ 545
           + ++W +V  +R++M   G+ K PG S +E+  +++ F + D SHPQ   +   L+ + +
Sbjct: 434 SERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKITE 493

Query: 546 KLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGD 605
            L   GY P T  VL D+E E+KE ++ YHSEK+AI F L++   G  IR+ KNLR+C D
Sbjct: 494 LLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPIRVMKNLRVCAD 553

Query: 606 CHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           CH   KL AK+ ++ IVIRD  R+HHF+ G+CSC DYW
Sbjct: 554 CHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 174/350 (49%), Gaps = 20/350 (5%)

Query: 12  TKPSSQARQ-FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGV 70
           + P S A   F++   P V + NTI R  +   +    F + R +         + C  V
Sbjct: 65  SAPMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQM--------VVSC--V 114

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
             D+ TY  L+K       V E + +H+  +  GFE   F+ N LL+++      E A  
Sbjct: 115 EPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYK 174

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           +F+ M ER++V+W +MI+ +      ++AL L   M  EGV P+ FT  ++L A   L  
Sbjct: 175 VFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGA 234

Query: 191 L---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L   R++H  ++KVG   +  V ++L+D+YAK G +R A+ VF+EM  R+ V W S+I G
Sbjct: 235 LELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVG 294

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI 307
            A N   +EAL L+K M+  G    + T   VL AC+   +L+ G + +   +K +  +I
Sbjct: 295 LAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFE-YFRRMKEECGII 353

Query: 308 LN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGY 352
                   ++D+  + G ++ A      M +Q + + W T++     +G+
Sbjct: 354 PRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGH 403


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/648 (37%), Positives = 373/648 (57%), Gaps = 14/648 (2%)

Query: 9   LKWTKPSSQARQFSLTITPPVA-------SCNTITRNSSSLLDDFTRFCYQRDLPRAMKA 61
           LK  KPS   +Q  +++  P +       +  TI  +    L  F          +    
Sbjct: 68  LKKLKPSPAPKQPRVSLGIPSSLPFDVGLAFPTIAPSRFGTLTSFPNSSNDSTRTKVAVF 127

Query: 62  MHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK 121
           +  +    + ADS+  + L+    +  +V     +H  V+      + F+ + L++M+ K
Sbjct: 128 LGKLHNSSLLADSIVQS-LVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFK 186

Query: 122 FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNMFTYSA 180
               E+AQ LFD+MP R++VSW +++S           L     M  E G +PN  T  +
Sbjct: 187 LGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLS 246

Query: 181 VLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           V+ AC  +  L   + LH  ++K+G      V ++LI++Y KLG L  A  +F EMP R 
Sbjct: 247 VVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRS 306

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH- 296
           LV WNS++     N   ++ ++L+  MKRAG   DQ+T+ ++LRACT   L      +H 
Sbjct: 307 LVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHA 366

Query: 297 -VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
            +H   ++ D+I+  ALL++Y K G L  +  +F  +  +D I+W+ M++G A +   +E
Sbjct: 367 YIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGRE 426

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           A+KLF+ M    ++ +++T   +L ACSH+G VE+G  +F+ M + Y ++P  +HYSCM+
Sbjct: 427 AIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMV 486

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           DLLGR+G+L++A +LI  MP EP +  W ALLGAC+V+ N +L    A+++L+LDP D  
Sbjct: 487 DLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHR 546

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
            YI+LSNIY+ +  W   ++VR  M+ R +T+ PGCS+IE   +IH F V D  HP+ D+
Sbjct: 547 NYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDE 606

Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
           I+  L+ LI+K+   G AP T +VL D++ E K D I  HSEKLAI FGL+    G  + 
Sbjct: 607 IHTKLEELIRKIXEAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLI 666

Query: 596 IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           I KNLRICGDCH+ AK  + +E +TI+IRD  R+HHF DG CSC DYW
Sbjct: 667 ITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 714


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/592 (38%), Positives = 362/592 (61%), Gaps = 42/592 (7%)

Query: 85  LARHA-VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSW 143
           LAR+  +++AK++ + +     EP     N ++  +++  +++EA+ LF++MP RN +SW
Sbjct: 331 LARYGRIDDAKILFDQI----HEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISW 386

Query: 144 TTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIK 200
             MI+ Y     +++AL  L  + R+G+ P++ + ++   AC ++  L   +Q+H   +K
Sbjct: 387 AGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVK 446

Query: 201 VGFESDVFVRSALIDIYAK---LGELRN----------------------------AECV 229
            G + + +V +ALI +Y K   +G +R                             A  V
Sbjct: 447 AGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDV 506

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           FN MP+ D+V W +II   AQ    +EA+ +++ M       +   LT +L     L   
Sbjct: 507 FNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAP 566

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
           +LG Q+H   +K   D  L++ NAL+ MY KC S  D++ VF  M ++D+ +W+T+I+G 
Sbjct: 567 QLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSS-ADSLKVFDSMEERDIFTWNTIITGY 625

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
           AQ+G  +EA+++++ M  + + PN +T VG+L ACSH+G V++G   FKSM   YG+ P 
Sbjct: 626 AQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPL 685

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            EHY+CM+DLLGRAG +Q A   I++MP EPD+V W ALLGACK+H+N ++   AA+K+ 
Sbjct: 686 LEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLF 745

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
           +++P + G Y++LSNIY++   WDEVA+VRK M+ RG+ K+PGCSW+++  ++H+F   D
Sbjct: 746 SIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGD 805

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
             H QI  I   L  L   L   GY PDT++VL D++ EQKE S+ YHSEKLA+ +GL+ 
Sbjct: 806 EEHEQIQNIYATLWELYTLLKATGYVPDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLV 865

Query: 588 LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
             +G  I+I KNLRICGDCHTF K  + +  + I +RD  R+HHF++G+CSC
Sbjct: 866 TPKGMPIQIMKNLRICGDCHTFIKFVSSVTKREIDVRDGNRFHHFRNGSCSC 917



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 127/481 (26%), Positives = 222/481 (46%), Gaps = 54/481 (11%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           R  + LL  + R    RD  R    M      GVR ++V +  ++ C +    +  A+ +
Sbjct: 96  RTGTILLSGYARAGRVRDARRVFDGM------GVR-NTVAWNAMVTCYVQNGDITLARKL 148

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
            + + S     +    N +L  +    L+EEA+ LF++MPERN VSWT MIS Y   + +
Sbjct: 149 FDAMPS----RDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQH 204

Query: 157 DKALELLIFMLREGV---RPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSAL 213
            +A ++   ML EG+   +PN+ +  + +R      IL  +H  + K GFE DV V +A+
Sbjct: 205 GRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAI 264

Query: 214 IDIYAK-LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           ++ Y K +  L +A   F  M  R+   W++II   +Q   +D+A  +Y+R       + 
Sbjct: 265 LNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSR 324

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
            S LT + R         L  Q+H      + +++  NA++  Y +   +++A  +F+RM
Sbjct: 325 TSMLTGLARYGRIDDAKILFDQIH------EPNVVSWNAMITGYMQNEMVDEAEDLFNRM 378

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
             ++ ISW+ MI+G A+NG S++AL   +++    + P+  ++    FACS+   +E G 
Sbjct: 379 PFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGK 438

Query: 393 N-HFKSMK------------------KFYGIDPGRE-----------HYSCMIDLLGRAG 422
             H  ++K                  K+  I   R+            Y+  +  L +  
Sbjct: 439 QVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNN 498

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD--PQDPGTYILL 480
              EA  + + MP  PD V+W  ++ AC      + A+   + +L+    P  P   ILL
Sbjct: 499 LFDEARDVFNNMP-SPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILL 557

Query: 481 S 481
            
Sbjct: 558 G 558



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 188/436 (43%), Gaps = 52/436 (11%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL--SGGFEPETFLVNI 114
           RA      M C G+  +      ++     RH  +   L   HVL    GFE +  +   
Sbjct: 206 RAWDMFRTMLCEGMTPEQPNLVSVLSAV--RHLGKPGILESIHVLVHKTGFERDVVVGTA 263

Query: 115 LLNMHVK-FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV-- 171
           +LN + K  ++L+ A   F+ M  RN  +W+T+I+A   A   D A  +      + V  
Sbjct: 264 ILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPS 323

Query: 172 RPNMFTYSAVL-RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           R +M T  A   R  D+ I+  Q+H        E +V   +A+I  Y +   +  AE +F
Sbjct: 324 RTSMLTGLARYGRIDDAKILFDQIH--------EPNVVSWNAMITGYMQNEMVDEAEDLF 375

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           N MP R+ + W  +I G+A+N   ++AL   + + R G     S+LTS   AC+ +  LE
Sbjct: 376 NRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALE 435

Query: 291 LGTQVHVHVLKY--DHDLILNNALLDMYCKCGSL-------------------------- 322
            G QVH   +K     +  + NAL+ +Y K  S+                          
Sbjct: 436 TGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALV 495

Query: 323 -----EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
                ++A  VF+ M   DV+SW+T+IS  AQ     EA+++F SM   R  PN   +  
Sbjct: 496 QNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTI 555

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           +L    + G  + G     ++    G+D G    + ++ +  +     +++K+   M  E
Sbjct: 556 LLGLSGNLGAPQLG-QQIHTIAIKLGMDSGLVVANALVSMYFKCSS-ADSLKVFDSME-E 612

Query: 438 PDAVTWRALLGACKVH 453
            D  TW  ++     H
Sbjct: 613 RDIFTWNTIITGYAQH 628



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 166/380 (43%), Gaps = 49/380 (12%)

Query: 121 KFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSA 180
           +   L EA+ +FD MP R++++W +MI AYC+  M D    L   +    +R      S 
Sbjct: 45  RLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTILLSG 104

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
             RA      +R        +G  + V   +A++  Y + G++  A  +F+ MP+RD+  
Sbjct: 105 YARAGR----VRDARRVFDGMGVRNTV-AWNAMVTCYVQNGDITLARKLFDAMPSRDVSS 159

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKR-------------------------------AGF 269
           WN+++ G+  +  ++EA NL++RM                                  G 
Sbjct: 160 WNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGM 219

Query: 270 AADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCK-CGSLEDAM 326
             +Q  L SVL A   L    +   +H  VH   ++ D+++  A+L+ Y K    L+ A+
Sbjct: 220 TPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAV 279

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
             F  M  ++  +WST+I+ L+Q G   +A  +++   +  +      + G+    +  G
Sbjct: 280 KFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGL----ARYG 335

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            ++D    F  +      +P    ++ MI    +   + EA  L + MP+  + ++W  +
Sbjct: 336 RIDDAKILFDQIH-----EPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFR-NTISWAGM 389

Query: 447 LGACKVHRNTDLAICAAKKI 466
           +     +  ++ A+ + + +
Sbjct: 390 IAGYARNGRSEQALVSLQAL 409



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 14/243 (5%)

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
           +SA I    +LG L  A  VF+ MP RD++ WNS+I  +  N   D   +L   +     
Sbjct: 36  QSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNL 95

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVF 329
                 L+   RA        +   + V       + +  NA++  Y + G +  A  +F
Sbjct: 96  RTGTILLSGYARAGRVRDARRVFDGMGV------RNTVAWNAMVTCYVQNGDITLARKLF 149

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
             M  +DV SW+TM++G   +   +EA  LFE M         + I G +    H     
Sbjct: 150 DAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHG---- 205

Query: 390 DGWNHFKSMKKFYGIDPGREHYSCMIDL---LGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
             W+ F++M    G+ P + +   ++     LG+ G L+    L+H+  +E D V   A+
Sbjct: 206 RAWDMFRTM-LCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAI 264

Query: 447 LGA 449
           L  
Sbjct: 265 LNG 267


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/549 (41%), Positives = 336/549 (61%), Gaps = 6/549 (1%)

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           ++  GFE + ++ N +L MHVK  ++ +A+ LFD+MPERN+VSW T+IS   D     +A
Sbjct: 1   MIDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEA 60

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDI 216
             L + M  E      FT++ ++RA   L ++   RQLH   +K+G   D+FV  ALID+
Sbjct: 61  FRLFLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDM 120

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           Y+K G + +A  VF EMP +  V WN+II G+A +   +EAL++Y  M+ +G   D  T 
Sbjct: 121 YSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTF 180

Query: 277 TSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
           + ++R C  LA +E   Q H  +++  +  D++ N AL+D Y K G +EDA  VF +M  
Sbjct: 181 SMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMAS 240

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
           K+VISW+ +I G   +G   EA++LFE M   R+ PN+IT + VL ACSH+G  E GW  
Sbjct: 241 KNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWEI 300

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR 454
           F+SM +   I P   HY+CMI+L+GR G L EA+ LI   P++P A  W ALL AC+V+ 
Sbjct: 301 FQSMGRDNRIKPRAMHYACMIELMGREGLLDEALALIRGAPFKPTANMWAALLTACRVNE 360

Query: 455 NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWI 514
           N +L   AA+K+  ++P     YI+L NIY ++    E A+V  T++ +G+   P CSWI
Sbjct: 361 NFELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCSWI 420

Query: 515 EVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQY 574
           EV ++ H F   D+ HPQ  +I + +  L+ ++   GY P+   +L D++ EQ+E    Y
Sbjct: 421 EVKRRPHVFLSGDNRHPQRKEIYQKVDKLMLEISKYGYVPNQKTLLPDVD-EQEERVRLY 479

Query: 575 HSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQD 634
           HSEKLAI FGL+S      ++I +  RICGDCH   KL A++  + IVIRD  R+HHF+ 
Sbjct: 480 HSEKLAIAFGLISTPYWAPLQIVQGHRICGDCHEAIKLIARVTGREIVIRDAGRFHHFKH 539

Query: 635 GNCSCGDYW 643
           G+CSC DYW
Sbjct: 540 GHCSCEDYW 548



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 184/367 (50%), Gaps = 38/367 (10%)

Query: 72  ADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVL 131
           A S T+A +I+       +   + +H   L  G   + F+   L++M+ K   +E+A+ +
Sbjct: 74  AGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARFV 133

Query: 132 FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL 191
           F++MPE+  V W T+I+ Y     +++AL++   M   GV+ + FT+S ++R C  L  +
Sbjct: 134 FEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRICARLASV 193

Query: 192 ---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
              +Q H  +I+ GF SD+   +AL+D Y+K G + +A  VF++M +++++ WN++IGG+
Sbjct: 194 EHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGGY 253

Query: 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLIL 308
             +    EA+ L+++M +     +  T  +VL AC+   L E G ++             
Sbjct: 254 GNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWEIF------------ 301

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
                           +M   +R I+   + ++ MI  + + G   EAL L   ++ +  
Sbjct: 302 ---------------QSMGRDNR-IKPRAMHYACMIELMGREGLLDEALAL---IRGAPF 342

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR-EHYSCMIDLLGRAGKLQEA 427
           KP       +L AC      E G   F + +K YG++P +  +Y  ++++   AG L+EA
Sbjct: 343 KPTANMWAALLTACRVNENFELG--KFAA-EKLYGMEPDKLNNYIVLLNIYNSAGNLKEA 399

Query: 428 VKLIHEM 434
             ++H +
Sbjct: 400 ADVVHTL 406



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 134/290 (46%), Gaps = 38/290 (13%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+   + M+  GV+ D  T++ +++ C    +VE AK  H  ++  GF  +      L++
Sbjct: 161 ALDMYYEMRDSGVKMDHFTFSMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVD 220

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            + K+  +E+A+ +FD+M  +NV+SW  +I  Y +     +A+EL   M++E + PN  T
Sbjct: 221 FYSKWGRIEDARHVFDKMASKNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHIT 280

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           + AVL AC         H G+ + G+E           I+  +G         N +  R 
Sbjct: 281 FLAVLSACS--------HSGLSERGWE-----------IFQSMGRD-------NRIKPRA 314

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           +  +  +I    +   +DEAL L   ++ A F    +   ++L AC      ELG     
Sbjct: 315 M-HYACMIELMGREGLLDEALAL---IRGAPFKPTANMWAALLTACRVNENFELGKFAAE 370

Query: 298 HVLKYDHDLILNN--ALLDMYCKCGSLEDAMSVFSRMIQKD-----VISW 340
            +   + D  LNN   LL++Y   G+L++A  V   + +K      V SW
Sbjct: 371 KLYGMEPDK-LNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCSW 419


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/668 (36%), Positives = 378/668 (56%), Gaps = 43/668 (6%)

Query: 14  PSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD 73
           P  +   +++++   +   N +  N+      F       D   A+K    M   G+  +
Sbjct: 8   PHFEGLPYAISVFETIQEPNLLIWNTM-----FRGHALSPDPVSALKLYVCMISLGLLPN 62

Query: 74  SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA----- 128
           S T+  L+K C    A +E   +H HVL  G+E + ++   L++M+V+   LE+A     
Sbjct: 63  SYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFD 122

Query: 129 --------------------------QVLFDQMPERNVVSWTTMISAYCDAKMNDKALEL 162
                                     + +FD++P ++VVSW  MIS Y +     +ALEL
Sbjct: 123 RSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALEL 182

Query: 163 LIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
              M++  VRP+  T   V+ A     S+ + RQ+H  I   GF S++ + +ALID Y+K
Sbjct: 183 FKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSK 242

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
            GE+  A  +F  +  +D++ WN +IGG+   +   EAL L++ M R+G + +  T+ S+
Sbjct: 243 CGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSI 302

Query: 280 LRACTGLALLELGTQVHVHVLKYDHDLI----LNNALLDMYCKCGSLEDAMSVFSRMIQK 335
           L AC  L  +++G  +HV++ K    +     L  +L+DMY KCG +E A  VF+ M+ K
Sbjct: 303 LHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHK 362

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
            + +W+ MI G A +G +  A  +F  M+ + IKP+ IT VG+L ACSHAG ++ G + F
Sbjct: 363 SLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIF 422

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN 455
           +SM   Y I P  EHY CMIDLLG +G  +EA ++I  M  EPD V W +LL ACK+H N
Sbjct: 423 RSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGN 482

Query: 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE 515
            +L    A+ +  ++P +PG+Y+LLSNIYA + +W+EVA +R  +  +G+ K PGCS IE
Sbjct: 483 VELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIE 542

Query: 516 VNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYH 575
           ++  +H F + D  HP+  +I   L+ +   L   G+ PDT+ VLQ++E E KE ++++H
Sbjct: 543 IDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEGALRHH 602

Query: 576 SEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDG 635
           SEKLAI FGL+S      + I KNLR+C +CH   KL +K+  + I+ RD  R+HHF+DG
Sbjct: 603 SEKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDG 662

Query: 636 NCSCGDYW 643
            CSC DYW
Sbjct: 663 VCSCNDYW 670


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/610 (38%), Positives = 362/610 (59%), Gaps = 19/610 (3%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105
            TR+        A++    M  +G + D  T + ++  C    +    + +H+  L  G 
Sbjct: 227 ITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGL 286

Query: 106 EPETFLVNILLNMHVKF---SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALEL 162
           E ++ +   L++M+ K      L  A+ +F++MP+ NV++WT ++S Y      D  + +
Sbjct: 287 ESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMI 346

Query: 163 LIF-MLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYA 218
           L   ML EG+RPN  TYS++L+AC +L      RQ+H   +K        V +AL+ +YA
Sbjct: 347 LFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYA 406

Query: 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK--RMKRAGFAADQSTL 276
           + G +  A   F+++  +++V        F+ N D D   N Y+  +++R        T 
Sbjct: 407 ESGSIEEARHAFDQLYEKNMV-------SFSGNLDGDGRSNTYQDYQIERMELGISTFTF 459

Query: 277 TSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
            S++ A   + +L  G ++H   LK  +  D  + N+L+ MY +CG L DA  VF  M  
Sbjct: 460 GSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMND 519

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
            +VISW++MISGLA++GY+  AL+LF  M  + +KPN +T + VL ACSHAG V++G  H
Sbjct: 520 HNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEH 579

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR 454
           F+ M+K +G+ P  EHY+CM+DLLGR+G +++A+  I+EMP + DA+ W+ LLGACK H 
Sbjct: 580 FRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHN 639

Query: 455 NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWI 514
           N D+   AA  ++ L+PQDP  Y+LLSN+YA +  WD+VA +R  MR + + KE G SW+
Sbjct: 640 NMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWM 699

Query: 515 EVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQY 574
            V+  IH F   D+SHPQ ++I   L+ LI+++  +GY PDT+ VL D+  E KE  +  
Sbjct: 700 HVDNTIHEFRAGDTSHPQAEEIYTKLETLIREIKVMGYVPDTSVVLHDMSDELKELCLLQ 759

Query: 575 HSEKLAIVFGLMSLTQG-KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQ 633
           HSEK+A+ FGL+S T   K IRI KNLR+C DCH+  K  +K   + I++RD  R+H  +
Sbjct: 760 HSEKIAVAFGLISCTSATKPIRIFKNLRVCVDCHSALKYVSKATGREIILRDSNRFHRMK 819

Query: 634 DGNCSCGDYW 643
           DG CSCG+YW
Sbjct: 820 DGECSCGEYW 829



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/315 (35%), Positives = 169/315 (53%), Gaps = 17/315 (5%)

Query: 93  AKLVHNHVLSGG--FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE--RNVVSWTTMIS 148
            + +  H+L  G   E +  + N LL ++ K S +  A+ +FD MP   R++VSWT M S
Sbjct: 66  GRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMAS 125

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCG-----IIKVGF 203
                    +AL L    L EG+ PN FT  A  +AC +  +   L  G     + K+GF
Sbjct: 126 CLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELF-HLAGGAVLGLVFKLGF 184

Query: 204 -ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
             +DV V  ALID++AK G+L     VF+ +  R +VVW  +I  +AQ+   DEA+ L+ 
Sbjct: 185 WGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFL 244

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKC- 319
            M   GF  DQ TL+S+L ACT L    LG Q+H   L+   + D  ++  L+DMY K  
Sbjct: 245 DMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSH 304

Query: 320 --GSLEDAMSVFSRMIQKDVISWSTMISGLAQNG-YSQEALKLFESMKVSRIKPNYITIV 376
              SL +A  VF+RM + +V++W+ ++SG  Q G    + + LF  M    I+PN+IT  
Sbjct: 305 NGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYS 364

Query: 377 GVLFACSHAGFVEDG 391
            +L AC++ G  + G
Sbjct: 365 SMLKACANLGDQDSG 379


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/593 (37%), Positives = 345/593 (58%), Gaps = 6/593 (1%)

Query: 57   RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
             A+     MQ   ++ + VT   ++  C     ++  K +H   +    + +      L+
Sbjct: 413  EALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALV 472

Query: 117  NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
            +M+ K      A   F++M  R++V+W ++I+ Y        A+++   +    + P+  
Sbjct: 473  SMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAG 532

Query: 177  TYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
            T   V+ AC  L  L Q   +H  I+K+GFESD  V++ALID+YAK G L +AE +FN+ 
Sbjct: 533  TMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKT 592

Query: 234  P-TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
              T+D V WN II  + QN    EA++ + +M+   F  +  T  SVL A   LA    G
Sbjct: 593  DFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREG 652

Query: 293  TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
               H  +++  +  + ++ N+L+DMY KCG L+ +  +F+ M  KD +SW+ M+SG A +
Sbjct: 653  MAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVH 712

Query: 351  GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
            G+   A+ LF  M+ S+++ + ++ V VL AC HAG VE+G   F SM   Y I P  EH
Sbjct: 713  GHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEH 772

Query: 411  YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
            Y+CM+DLLGRAG   E +  I  MP EPDA  W ALLG+C++H N  L   A   ++ L+
Sbjct: 773  YACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLE 832

Query: 471  PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSH 530
            P++P  +++LS+IYA S +W +  + R  M   G+ K PGCSW+E+  ++HAF V D SH
Sbjct: 833  PRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSH 892

Query: 531  PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
            PQ++ ++     L++K+  +GY PD + VLQ++E E KE  +  HSE+LAI F L++   
Sbjct: 893  PQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPP 952

Query: 591  GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            G TI+I KNLR+C DCHT  K  +K+  + I++RD  R+HHF+DG CSC DYW
Sbjct: 953  GSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 211/392 (53%), Gaps = 39/392 (9%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  ++  GF+    + + L+N++  F   + A+ +FD  P  + + W +MI AY  +K 
Sbjct: 51  IHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQ 109

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSA 212
            ++ALE+   M+ +G+ P+ +T++ VL+AC   + L++    H  I + G E DVF+ + 
Sbjct: 110 YNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAG 169

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           L+D+Y+K+G+L+ A  VF++MP RD+V WN++I G +Q+ D  EA++ ++ M+  G    
Sbjct: 170 LVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPS 229

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
             +L ++      L+ +EL   +H +V + D    ++N L+D+Y KCG ++ A  VF +M
Sbjct: 230 SVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQM 289

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG- 391
           + +D +SW TM++G A NG   E L+LF+ MK+  ++ N ++ V    A +    +E G 
Sbjct: 290 VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGK 349

Query: 392 ----------------------------WNHFKSMKKFYGIDPGRE--HYSCMIDLLGRA 421
                                           K+ + F+G+  GR+   +S +I  L + 
Sbjct: 350 EIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQ-GRDLVAWSAIIAALVQT 408

Query: 422 GKLQEAVKLIHEM---PYEPDAVTWRALLGAC 450
           G  +EA+ L  EM     +P+ VT  ++L AC
Sbjct: 409 GYPEEALSLFQEMQNQKMKPNRVTLMSILPAC 440



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 122/402 (30%), Positives = 211/402 (52%), Gaps = 8/402 (1%)

Query: 53  RDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
            D   A+    +MQ  GV   SV+   L         +E  + +H +V    F   + + 
Sbjct: 209 EDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFS--SAVS 266

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N L++++ K   ++ A+ +FDQM +++ VSW TM++ Y       + LEL   M    VR
Sbjct: 267 NGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVR 326

Query: 173 PNMFT-YSAVLRACDSLIILR--QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
            N  +  SA L A +++ + +  ++H   ++   +SD+ V + L+ +YAK GE   A+ +
Sbjct: 327 INKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQL 386

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F  +  RDLV W++II    Q    +EAL+L++ M+      ++ TL S+L AC  L+LL
Sbjct: 387 FWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLL 446

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
           +LG  +H   +K   D DL    AL+ MY KCG    A++ F+RM  +D+++W+++I+G 
Sbjct: 447 KLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGY 506

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
           AQ G    A+ +F  +++S I P+  T+VGV+ AC+    ++ G      + K  G +  
Sbjct: 507 AQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKL-GFESD 565

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
               + +ID+  + G L  A  L ++  +  D VTW  ++ A
Sbjct: 566 CHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 210/418 (50%), Gaps = 18/418 (4%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           +S++  +TR    +    A++  + M   G+  D  T+  ++K C     ++E    H  
Sbjct: 98  NSMIRAYTR---SKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGE 154

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           +   G E + F+   L++M+ K   L+ A+ +FD+MP+R+VV+W  MI+    ++   +A
Sbjct: 155 IDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEA 214

Query: 160 LELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDI 216
           ++    M   GV P+  +   +        ++ + R +H  + +  F S   V + LID+
Sbjct: 215 VDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSA--VSNGLIDL 272

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           Y+K G++  A  VF++M  +D V W +++ G+A N    E L L+ +MK      ++ + 
Sbjct: 273 YSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSA 332

Query: 277 TSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
            S   A      LE G ++H   L  + D D+++   L+ MY KCG  E A  +F  +  
Sbjct: 333 VSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQG 392

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
           +D+++WS +I+ L Q GY +EAL LF+ M+  ++KPN +T++ +L AC+    ++ G   
Sbjct: 393 RDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLG--- 449

Query: 395 FKSMKKFY---GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            KS+  F     +D      + ++ +  + G    A+   + M    D VTW +L+  
Sbjct: 450 -KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSLING 505



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 144/289 (49%), Gaps = 15/289 (5%)

Query: 167 LREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           L      N   Y  +L +C  L  L Q+H  II  GF+    + + LI++Y+   +   A
Sbjct: 24  LSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLA 82

Query: 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
             VF+  P    ++WNS+I  + ++   +EAL +Y  M   G   D+ T T VL+ACTG 
Sbjct: 83  RSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGA 142

Query: 287 ALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
             L+ G   H  + +   + D+ +   L+DMY K G L+ A  VF +M ++DV++W+ MI
Sbjct: 143 LNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMI 202

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI 404
           +GL+Q+    EA+  F SM++  ++P+ ++++ +         +E         +  +G 
Sbjct: 203 AGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIE-------LCRSIHGY 255

Query: 405 DPGREHYSC----MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
              R+  S     +IDL  + G +  A ++  +M  + D V+W  ++  
Sbjct: 256 VFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTMMAG 303


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/607 (36%), Positives = 359/607 (59%), Gaps = 9/607 (1%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105
            +  C       A+  +  M   GV  D+VT + ++  C+       A ++H + +  G 
Sbjct: 140 LSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGL 199

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
             E F+ N L++++ K  +L EA  +F  M  R++V+W ++ISA         A+EL   
Sbjct: 200 SGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHG 259

Query: 166 MLREGVRPNMFTYSAVLRA---CDSLIILRQLHCGIIKVGFE-SDVFVRSALIDIYAKLG 221
           M+  GV P++ T  ++  A   C   +  + +HC + + G++  D+   +A++D+YAK+ 
Sbjct: 260 MMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMS 319

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVL 280
           ++  A+ VF+ +P RD+V WN++I G+ QN   +EA+ +Y  M    G    Q T  SVL
Sbjct: 320 KIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVL 379

Query: 281 RACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
            A + L  L+ G ++H   +K   + D+ +   L+D+Y KCG L +AM +F  M ++   
Sbjct: 380 PAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTG 439

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
            W+ +I+GL  +G+  +AL LF  M+   IKP+++T V +L ACSHAG V+ G + F  M
Sbjct: 440 PWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLM 499

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
           +  YGI P  +HY+CM+D+LGRAG+L EA + I  MP +PD+  W ALLGAC++H N ++
Sbjct: 500 QTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEM 559

Query: 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNK 518
              A++ +  LDP++ G Y+L+SN+YA   KWD V  VR  +R + + K PG S +EV  
Sbjct: 560 GKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKG 619

Query: 519 QIHAF--NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHS 576
            +  F        HPQ ++I + L  L+ K+   GY PD ++VLQD+E ++KE  +  HS
Sbjct: 620 SVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHS 679

Query: 577 EKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGN 636
           E+LAI FG+++   G  + I KNLR+CGDCH+  K  +K+  + I++RD  R+HHF+DG+
Sbjct: 680 ERLAIAFGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANRFHHFKDGH 739

Query: 637 CSCGDYW 643
           CSCGD+W
Sbjct: 740 CSCGDFW 746



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 138/395 (34%), Positives = 202/395 (51%), Gaps = 15/395 (3%)

Query: 68  HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           H +R DS T+  L++   A      A+L    +  G   P  F    L++ +++F  + E
Sbjct: 63  HPLRPDSFTFPPLVRA--APGPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAE 120

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A  +FD+MPER+V +W  M+S  C       A+ LL  M+ EGV  +  T S+VL  C  
Sbjct: 121 AYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVV 180

Query: 188 L---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L    +   +H   +K G   ++FV +ALID+Y KLG L  A  VF  M  RDLV WNSI
Sbjct: 181 LGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSI 240

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ-VHVHVLKYD 303
           I    Q   V  A+ L+  M  +G   D  TL S+  A       ELG + VH +V +  
Sbjct: 241 ISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCG-DELGAKSVHCYVRRRG 299

Query: 304 ---HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
               D+I  NA++DMY K   ++ A  VF  +  +DV+SW+T+I+G  QNG + EA++++
Sbjct: 300 WDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIY 359

Query: 361 ESMKVSR-IKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLL 418
             M     +KP   T V VL A S+ G ++ G   H  S+K   G++      +C+IDL 
Sbjct: 360 NDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKT--GLNLDVYVTTCLIDLY 417

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            + GKL EA+ L   MP       W A++    VH
Sbjct: 418 AKCGKLVEAMFLFEHMPRRSTG-PWNAIIAGLGVH 451


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/584 (39%), Positives = 342/584 (58%), Gaps = 68/584 (11%)

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP-NMFTYSAVLRACD 186
           A+ +FD++P  +   W TMI AY +++   +++ L   M  +   P + ++ S V++AC 
Sbjct: 57  ARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACG 116

Query: 187 SLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGEL---RN--------------- 225
            L      ++LH  ++K+G  SD+FV +ALI++YAK G++   RN               
Sbjct: 117 RLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNV 176

Query: 226 -------------AECVFNEMPTRDLVVWNSIIGGFAQNSDV------------------ 254
                        A  +F+ MP RDLV WN++I G A   DV                  
Sbjct: 177 LLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISW 236

Query: 255 -------------DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHV 299
                        +EAL L+  M+ A    D+ T+ SVL AC  +  L +G  +H  +  
Sbjct: 237 SSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIER 296

Query: 300 LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
            + + DL L  +L+DMY KCG +++++ VF+ M  +DV +WS MI GLA +G+ + AL  
Sbjct: 297 NRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDH 356

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F  M    IKPN +T +GVL ACSH G V++GW +F SM K Y + P  EHY C++D+LG
Sbjct: 357 FSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILG 416

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           RAG+LQEA++LI  MP+ PDA+ WRALLGAC++++N ++A  A   +L L+P   G Y+L
Sbjct: 417 RAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVL 476

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LSNIY+ +++WD+V  VR+ M+   I K PG S IEV+  +H F   D SHP+  KI + 
Sbjct: 477 LSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRM 536

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
           L  +  +L   GYAP T  VLQD + ++KE+++ +HSEKLAI FGL+S   G TIRI KN
Sbjct: 537 LSEITARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKN 596

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           LR+C DCH   KL ++   + I++RD  R+HHF +G+CSC DYW
Sbjct: 597 LRVCDDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 149/343 (43%), Gaps = 69/343 (20%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF-------SLL 125
           DS + + +I+ C         + +H  VL  G   + F+   L+ M+ KF       ++L
Sbjct: 104 DSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNIL 163

Query: 126 EE------------------------AQVLFDQMPERNVVSWTT---------------- 145
           +E                        A  LFD+MPER++VSW T                
Sbjct: 164 DEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKK 223

Query: 146 ---------------MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
                          MI+AY  A+ +++AL L   M    V P+  T  +VL AC  +  
Sbjct: 224 LFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGA 283

Query: 191 L---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L   + +H  I +   E D+ + ++L+D+YAK G++ N+  VFN M  RD+  W+++I G
Sbjct: 284 LGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMG 343

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDL 306
            A +   + AL+ + +M       +  T   VL AC+ + L++ G      + K YD   
Sbjct: 344 LANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSP 403

Query: 307 ILNN--ALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
            + +   ++D+  + G L++AM +   M    D I W  ++  
Sbjct: 404 KIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGA 446



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 21/212 (9%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           +   R    A++  H MQ   V  D VT   ++  C    A+   K++H  +     E +
Sbjct: 243 YAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEID 302

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             L   L++M+ K   ++ +  +F+ M  R+V +W+ MI    +    + AL+    M+ 
Sbjct: 303 LKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMIS 362

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFE-----SDVFVRSA-------LIDI 216
           E ++PN  T+  VL AC         H G++  G+      S V+  S        ++DI
Sbjct: 363 EDIKPNDVTFIGVLSACS--------HIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDI 414

Query: 217 YAKLGELRNAECVFNEMP-TRDLVVWNSIIGG 247
             + G L+ A  +   MP   D +VW +++G 
Sbjct: 415 LGRAGRLQEAMELIKSMPFAPDAIVWRALLGA 446


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/600 (39%), Positives = 371/600 (61%), Gaps = 19/600 (3%)

Query: 51  YQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH-VLSGGFEPET 109
           YQR +P            G+  D  T++ + K       V E +  H   V+ G      
Sbjct: 164 YQRMVP-----------DGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNV 212

Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
           F+ + L++M+ KF  + +A+++ DQ+  ++VV +T +I  Y     + ++L++   M ++
Sbjct: 213 FVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKK 272

Query: 170 GVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           G+  N +T S+VL  C +L  L   R +H  I+K G ES V  +++L+ +Y + G + ++
Sbjct: 273 GIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDS 332

Query: 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
             VF +    + V W S+I G  QN   + AL  +++M R+    +  TL+SVLRAC+ L
Sbjct: 333 LKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSL 392

Query: 287 ALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
           A+LE G Q+H  V+K+  D D  +  AL+D Y KCGS E A SVF+ +++ DV+S ++MI
Sbjct: 393 AMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMI 452

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI 404
              AQNG+  EAL+LF  MK + ++PN +T +GVL AC++AG +E+G + F S +    I
Sbjct: 453 YSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNI 512

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAK 464
           +  ++HY+CM+DLLGRAG+L+EA  LI+++    D V WR LL AC++H + ++A     
Sbjct: 513 ELTKDHYACMVDLLGRAGRLKEAEMLINQVNI-SDVVIWRTLLSACRIHGDVEMAKRVMN 571

Query: 465 KILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFN 524
           ++++L P+D GT++LLSN+YA++  W +V E++  MR   + K P  SW++V ++IH F 
Sbjct: 572 RVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFM 631

Query: 525 VADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFG 584
             D SHP    I + L+ LI+K+  +GY PDT +VLQDL+ E+K  S+ YHSEKLA+ F 
Sbjct: 632 AGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAVAFA 691

Query: 585 L-MSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L  S  +  TIRI KNLR+CGDCHT+ K  +K+  + I+ RD  R+HHF++G CSCGDYW
Sbjct: 692 LWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGDYW 751



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 222/414 (53%), Gaps = 43/414 (10%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y+ LI+ C+   ++ +   + +H L  GF     L N L++ ++K   +  A+ +FD++P
Sbjct: 80  YSSLIQQCIGIKSITDITKIQSHALKRGFHHS--LGNKLIDAYLKCGSVVYARKVFDEVP 137

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQ 193
            R++V+W +MI++Y     + +A+++   M+ +G+ P+ FT+S+V +A   L ++   ++
Sbjct: 138 HRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQR 197

Query: 194 LHCGIIKVGFE-SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            H   + +G   S+VFV SAL+D+YAK G++R+A  V +++  +D+V++ ++I G++ + 
Sbjct: 198 AHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHG 257

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNN 310
           +  E+L +++ M + G  A++ TL+SVL  C  L  L  G  +H  ++K   +  +    
Sbjct: 258 EDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQT 317

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           +LL MY +CG ++D++ VF + I  + ++W+++I GL QNG  + AL  F  M  S I P
Sbjct: 318 SLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITP 377

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ----- 425
           N  T+  VL ACS    +E G      + KF G+D  +   + +ID  G+ G  +     
Sbjct: 378 NSFTLSSVLRACSSLAMLEQGKQIHAIVMKF-GLDIDKYVGAALIDFYGKCGSTEIARSV 436

Query: 426 --------------------------EAVKLIHEMP---YEPDAVTWRALLGAC 450
                                     EA++L   M     EP+ VTW  +L AC
Sbjct: 437 FNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSAC 490



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 161/316 (50%), Gaps = 11/316 (3%)

Query: 178 YSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           YS++++ C    S+  + ++    +K GF   +   + LID Y K G +  A  VF+E+P
Sbjct: 80  YSSLIQQCIGIKSITDITKIQSHALKRGFHHSL--GNKLIDAYLKCGSVVYARKVFDEVP 137

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            R +V WNS+I  + +N    EA+++Y+RM   G   D+ T +SV +A + L L+  G +
Sbjct: 138 HRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQR 197

Query: 295 VHVHVLKYD---HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
            H   +       ++ + +AL+DMY K G + DA  V  +++ KDV+ ++ +I G + +G
Sbjct: 198 AHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHG 257

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
              E+L++F +M    I+ N  T+  VL  C +   +  G      +    G++      
Sbjct: 258 EDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSG-RLIHGLIVKAGLESAVASQ 316

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           + ++ +  R G + +++K+  +    P+ VTW +++     +   ++A+   +++L    
Sbjct: 317 TSLLTMYYRCGLVDDSLKVFKQF-INPNQVTWTSVIVGLVQNGREEIALLKFRQMLR-SS 374

Query: 472 QDPGTYILLSNIYANS 487
             P ++ L S + A S
Sbjct: 375 ITPNSFTLSSVLRACS 390


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/555 (42%), Positives = 349/555 (62%), Gaps = 27/555 (4%)

Query: 107 PETFLV--NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
           PET  +  N L++ +V+  ++ EA+ +FD+MPERNVVSWT MI  Y    + ++A ELL 
Sbjct: 21  PETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEA-ELLF 79

Query: 165 FMLREGVRPNMFTYSAVLRAC--DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           + + E    N+ +++ +L     D  +   +    ++ V    DV   + +ID     G 
Sbjct: 80  WRMPE---RNVVSWTVMLGGLIEDGRVDEARQLFDMMPV---KDVVASTNMIDGLCSEGR 133

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGG-------------FAQNSDVDEALNLYKRMKRAGF 269
           L  A  +F+EMP R++V W S+I G             + +     EAL L+  M+R G 
Sbjct: 134 LIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGV 193

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMS 327
                ++ SVL  C  LA L+ G QVH  +++  +D D+ +++ L+ MY KCG L  A  
Sbjct: 194 RPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKR 253

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           VF R   KD++ W+++I+G AQ+G+ ++AL++F  M  S I P+ IT +GVL ACS+ G 
Sbjct: 254 VFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGK 313

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           V++G   F+SMK  Y +DP  EHY+CM+DLLGRAGKL EA+ LI  MP E DA+ W ALL
Sbjct: 314 VKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALL 373

Query: 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507
           GAC+ H+N DLA  AAKK+L L+P + G YILLSN+Y++  +W +V E+RKTMRA+ + K
Sbjct: 374 GACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRK 433

Query: 508 EPGCSWIEVNKQIHAFNVADS-SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
            PGCSWIEV+K++H F+   S SHP+ + I K L  L   L   GY PD ++V+ D++ E
Sbjct: 434 SPGCSWIEVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGYCPDGSFVMHDVDEE 493

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
           +K  S++ HSEKLA+ +GL+ + +G  IR+ KNLR+CGD H+  KL A++  + I++RD 
Sbjct: 494 EKVHSLRDHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDT 553

Query: 627 IRYHHFQDGNCSCGD 641
            R+HHF+DG CSC D
Sbjct: 554 NRFHHFKDGLCSCSD 568



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 101/213 (47%), Gaps = 21/213 (9%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     MQ  GVR    +   ++  C +  +++  + VH+ ++   F+ + ++ ++L+ 
Sbjct: 181 ALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLIT 240

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M++K   L  A+ +FD+   +++V W ++I+ Y      +KALE+   M    + P+  T
Sbjct: 241 MYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEIT 300

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSA------------LIDIYAKLGELRN 225
           +  VL AC         + G +K G E    ++S             ++D+  + G+L  
Sbjct: 301 FIGVLSACS--------YTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNE 352

Query: 226 AECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
           A  +   MP   D +VW +++G    + ++D A
Sbjct: 353 AMNLIENMPVEADAIVWGALLGACRTHKNLDLA 385



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/324 (20%), Positives = 139/324 (42%), Gaps = 51/324 (15%)

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           R A  +F++MP  + + WN ++ G+ QN  + EA  ++ +M          + T+++R  
Sbjct: 11  REARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVV----SWTAMIRGY 66

Query: 284 TGLALLE--------------LGTQVHVHVLKYD---------------HDLILNNALLD 314
               L+E              +   V +  L  D                D++ +  ++D
Sbjct: 67  VQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMID 126

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISG-------------LAQNGYSQEALKLFE 361
             C  G L +A  +F  M Q++V++W++MISG               + G+  EAL LF 
Sbjct: 127 GLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFS 186

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGR 420
            M+   ++P++ +++ VL  C     ++ G   H + ++  + ID      S +I +  +
Sbjct: 187 LMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVS--SVLITMYIK 244

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD-PQDPGTYIL 479
            G L  A ++      + D V W +++     H   + A+     + +     D  T+I 
Sbjct: 245 CGDLVTAKRVFDRFSSK-DIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIG 303

Query: 480 LSNIYANSQKWDEVAEVRKTMRAR 503
           + +  + + K  E  E+ ++M+++
Sbjct: 304 VLSACSYTGKVKEGLEIFESMKSK 327


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/574 (40%), Positives = 357/574 (62%), Gaps = 9/574 (1%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           TYA +IK C     +  A+ +H+ VL  GF     ++  L + + K   L +A  +F   
Sbjct: 304 TYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMT 363

Query: 136 P-ERNVVSWTTMISAYCDAKMNDKALELLIF--MLREGVRPNMFTYSAVLRACDSLIILR 192
              RNVVSWT +IS     +  D  L +++F  M  + V PN FTYSA+L+A  S I+  
Sbjct: 364 TGSRNVVSWTAIISGC--IQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLS-ILPP 420

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           Q+H  +IK  ++    V +AL+  Y+K G   +A  +F  +  +D+V W++++   AQ  
Sbjct: 421 QIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAG 480

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACT-GLALLELGTQVHVHVLKYD-HDLI-LN 309
           D + A  L+ +M   G   ++ T++SV+ AC    A ++ G Q H   +KY  HD I ++
Sbjct: 481 DCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVS 540

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
           +AL+ MY + G+++ A  VF R   +D++SW++MISG AQ+GYS +A++ F  M+ S I+
Sbjct: 541 SALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQ 600

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
            + +T + V+  C+H G V +G  +F SM + + I+P  EHY+CM+DL  RAGKL E + 
Sbjct: 601 MDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMS 660

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489
           LI +MP+   A+ WR LLGAC+VH+N +L   +A K+L+L+P D  TY+LLSNIYA + K
Sbjct: 661 LIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGK 720

Query: 490 WDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549
           W E  EVRK M  R + KE GCSWI++  ++H+F   D SHP  D+I K LK +I +L  
Sbjct: 721 WKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQ 780

Query: 550 VGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
            GY+P+T++VL D+  +QKE  +  HSE+LA+ FGL++   G  ++I KNLR+CGDCH  
Sbjct: 781 DGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMV 840

Query: 610 AKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            K+ + +E++ I++RD  R+HHF  G CSCGD+W
Sbjct: 841 MKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 134/439 (30%), Positives = 222/439 (50%), Gaps = 31/439 (7%)

Query: 27  PPVA--SCNTITRNSSSLLDDFTRFCYQRD--LPRAMKAMHAMQCHGVRADSVTYAELIK 82
           PP A    + I R  +++  +   F Y R   +P  +      +  GV  DS T + ++K
Sbjct: 48  PPGARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLK 107

Query: 83  CCLARHAVEEAKLVHNHVLSGGFE-PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVV 141
            C +       + +H   +  G +  E      L++M++K   + E   +F+ MP++NVV
Sbjct: 108 ACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVV 167

Query: 142 SWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS---LIILRQLHCGI 198
           +WT++++    A+M+ + + L   M  EG+ PN FT+++VL A  S   L + +++H   
Sbjct: 168 TWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQS 227

Query: 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEAL 258
           +K G  S VFV ++L+++YAK G + +A+ VFN M TRD+V WN+++ G   N    EAL
Sbjct: 228 VKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEAL 287

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLDMY 316
            L+   +       QST  +V++ C  L  L L  Q+H  VLK+   L  N   AL D Y
Sbjct: 288 QLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAY 347

Query: 317 CKCGSLEDAMSVFSRMI-QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITI 375
            KCG L DA+++FS     ++V+SW+ +ISG  QNG    A+ LF  M+  R+ PN  T 
Sbjct: 348 SKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTY 407

Query: 376 VGVLFAC-------SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
             +L A         HA  ++  + H  S+             + ++    + G  ++A+
Sbjct: 408 SAMLKASLSILPPQIHAQVIKTNYQHIPSVG------------TALLASYSKFGSTEDAL 455

Query: 429 KLIHEMPYEPDAVTWRALL 447
             I +M  + D V W A+L
Sbjct: 456 S-IFKMIEQKDVVAWSAML 473


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/581 (40%), Positives = 344/581 (59%), Gaps = 34/581 (5%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  +   G +    L   L   +     L+ +  LF +    +V  WT +I  +    +
Sbjct: 49  IHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGL 108

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALID 215
           +++AL     ML +GV PN FT+S++L+ C  +   + LH   +K+GF+SD++VR+ L+D
Sbjct: 109 HEQALNFYAQMLTQGVEPNAFTFSSILKLC-PIEPGKALHSQAVKLGFDSDLYVRTGLLD 167

Query: 216 IYAKLGELRNAECVFNEMPT-------------------------------RDLVVWNSI 244
           +YA+ G++ +A+ +F+ MP                                RD V WN +
Sbjct: 168 VYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVM 227

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           I G+ QN   +EAL L++RM +A    ++ T+ SVL AC  L  LE G  VH ++     
Sbjct: 228 IDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGI 287

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
             ++ +  AL+DMY KCGSLEDA  VF ++  KDV++W++MI G A +G+SQEAL+LF+S
Sbjct: 288 QFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKS 347

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           M    + P  IT +G+L AC H+G+V +GW+ F  MK  YGI+P  EHY CM++LLGRAG
Sbjct: 348 MCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAG 407

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
            +++A +L+  M  EPD V W  LLGAC++H    L     + +++ +  + GTYILLSN
Sbjct: 408 HVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSN 467

Query: 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKH 542
           IYA    WD VA +R  M+  G+ KEPGCS IEVN ++H F     +HP+  +I   L+ 
Sbjct: 468 IYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEE 527

Query: 543 LIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
           +   L   GY P T+ VL D+   +KE S++ HSEKLAI FGL++   G TI+I KNLR+
Sbjct: 528 INGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRV 587

Query: 603 CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           C DCH   KL +K+  + IV+RD  R+HHF +G+CSCGDYW
Sbjct: 588 CADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 178/394 (45%), Gaps = 52/394 (13%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+     M   GV  ++ T++ ++K C     +E  K +H+  +  GF+ + ++   LL
Sbjct: 111 QALNFYAQMLTQGVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLL 166

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVS-------------------------------WTT 145
           +++ +   +  AQ LFD MPE+++VS                               W  
Sbjct: 167 DVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNV 226

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVG 202
           MI  Y    M ++AL L   ML+   +PN  T  +VL AC  L  L   R +H  I   G
Sbjct: 227 MIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNG 286

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
            + +V V +AL+D+Y+K G L +A  VF+++  +D+V WNS+I G+A +    EAL L+K
Sbjct: 287 IQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFK 346

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCK 318
            M R G      T   +L AC     +  G  +  + +K ++ +         ++++  +
Sbjct: 347 SMCRMGLHPTNITFIGILSACGHSGWVTEGWDI-FNKMKDEYGIEPKIEHYGCMVNLLGR 405

Query: 319 CGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI--KPNYITI 375
            G +E A  +   M I+ D + W T++     +G      K+ E +    +     YI +
Sbjct: 406 AGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILL 465

Query: 376 VGVLFACSHAGFVEDGWNHFKSMKKFYGI--DPG 407
             +  A  +     DG    ++M K  G+  +PG
Sbjct: 466 SNIYAAVGNW----DGVARLRTMMKDSGVKKEPG 495



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 132/297 (44%), Gaps = 41/297 (13%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           L Q+H  + + G +    +   L   YA LG L  +  +F       +  W +II G A 
Sbjct: 46  LLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHAL 105

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
               ++ALN Y +M   G   +  T +S+L+ C     +E G  +H   +K  +D DL +
Sbjct: 106 RGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYV 161

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVIS----------------------------- 339
              LLD+Y + G +  A  +F  M +K ++S                             
Sbjct: 162 RTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDG 221

Query: 340 --WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFK 396
             W+ MI G  QNG   EAL LF  M  ++ KPN +T++ VL AC   G +E G W H  
Sbjct: 222 VCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVH-- 279

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           S  +  GI       + ++D+  + G L++A +L+ +   + D V W +++    +H
Sbjct: 280 SYIENNGIQFNVHVGTALVDMYSKCGSLEDA-RLVFDKIDDKDVVAWNSMIVGYAMH 335



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 102/219 (46%), Gaps = 26/219 (11%)

Query: 42  LLDDFTRFCYQRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHV 100
           ++D +T    Q  +P  A+     M     + + VT   ++  C    A+E  + VH+++
Sbjct: 227 MIDGYT----QNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYI 282

Query: 101 LSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKAL 160
            + G +    +   L++M+ K   LE+A+++FD++ +++VV+W +MI  Y     + +AL
Sbjct: 283 ENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEAL 342

Query: 161 ELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGII------------KVGFESDVF 208
           +L   M R G+ P   T+  +L AC         H G +            + G E  + 
Sbjct: 343 QLFKSMCRMGLHPTNITFIGILSACG--------HSGWVTEGWDIFNKMKDEYGIEPKIE 394

Query: 209 VRSALIDIYAKLGELRNA-ECVFNEMPTRDLVVWNSIIG 246
               ++++  + G +  A E V N     D V+W +++G
Sbjct: 395 HYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLG 433


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/602 (38%), Positives = 353/602 (58%), Gaps = 7/602 (1%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           F   RD  R       M   G+    V  +  +  C     +   + +   +L  G E E
Sbjct: 51  FAENRDFDRCWLFFRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEE 110

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
           + +   L++++ K     +A  +F +M  R+VV+W+ M++AY       +AL L   M  
Sbjct: 111 SIVQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDL 170

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           +GV PN  T  + L AC SL  LR    +H  +   G +S V V +AL+++Y K G +  
Sbjct: 171 DGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEA 230

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A   F ++  +++V W++I   +A+N    +A+ +  RM   G A + +T  SVL AC  
Sbjct: 231 AAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAA 290

Query: 286 LALLELGTQVH--VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
           +A L+ G ++H  +HVL    + D+ +  AL++MY KCG+L  A ++F ++   D++ W+
Sbjct: 291 IAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWN 350

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
           ++I+  AQ+G +++AL+LFE M++  ++P  IT   VLFACSHAG ++ G  HF S    
Sbjct: 351 SLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGD 410

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
           +GI P  EH+ CM+DLLGRAG + ++  L+  MP+EP  V W A LGAC+ +RN D AI 
Sbjct: 411 HGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIW 470

Query: 462 AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIH 521
           AA+ +  LDP+    Y+LLSN+YA + +W +VA +R+ M+     KE G SWIEV  ++H
Sbjct: 471 AAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVH 530

Query: 522 AFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAI 581
            F   D  HP+I +I+  L+ L + +   GY PDT  VL D++ E KE  + YHSEKLA+
Sbjct: 531 EFISGDLDHPRIGEIHAELQRLTKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSEKLAM 590

Query: 582 VFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641
            F L++  +G  IR+ KNLR+C DCHT +K  +K+ N+ IV+RD  R+H FQ+G CSCGD
Sbjct: 591 AFALLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGD 650

Query: 642 YW 643
           YW
Sbjct: 651 YW 652



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 199/391 (50%), Gaps = 8/391 (2%)

Query: 104 GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL 163
           G+    FL N+L++++ K    ++A  +F  +  +NV SWT M++A+ + +  D+     
Sbjct: 5   GWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFF 64

Query: 164 IFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKL 220
             ML +G+ P     S  L AC     + I R +   I+  G E +  V++AL+ +Y KL
Sbjct: 65  RGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKL 124

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           G   +A  VF  M  RD+V W++++  +A+N    EAL L+++M   G A ++ TL S L
Sbjct: 125 GHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGL 184

Query: 281 RACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
            AC  L  L  G  +H  V        +++  AL+++Y KCG +E A   F ++++K+V+
Sbjct: 185 DACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVV 244

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKS 397
           +WS + +  A+N  +++A+++   M +  + PN  T V VL AC+    ++ G   H + 
Sbjct: 245 AWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERI 304

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457
                G++      + ++++  + G L  A  +  ++ +  D V W +L+     H  T+
Sbjct: 305 HVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAH-LDLVLWNSLIATNAQHGQTE 363

Query: 458 LAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
            A+   ++ + L+   P      S ++A S 
Sbjct: 364 KALELFER-MRLEGLQPTIITFTSVLFACSH 393



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 138/261 (52%), Gaps = 5/261 (1%)

Query: 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN 259
           ++G+  + F+ + LID+Y K     +A  VF+ + ++++  W  ++  FA+N D D    
Sbjct: 3   ELGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWL 62

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYC 317
            ++ M   G    +  ++  L ACT    + +G  + + +L    + + I+  AL+ +Y 
Sbjct: 63  FFRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYG 122

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           K G   DA SVF RM  +DV++WS M++  A+NG+ +EAL LF  M +  + PN +T+V 
Sbjct: 123 KLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVS 182

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
            L AC+  G +  G    + ++   GI  G    + +++L G+ G+++ A +   ++  E
Sbjct: 183 GLDACASLGDLRSGALMHQRVEA-QGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQI-VE 240

Query: 438 PDAVTWRALLGA-CKVHRNTD 457
            + V W A+  A  +  RN D
Sbjct: 241 KNVVAWSAISAAYARNDRNRD 261



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 124/287 (43%), Gaps = 26/287 (9%)

Query: 300 LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
           L +  +  L N L+D+Y KC   +DA++VF  +  K+V SW+ M++  A+N         
Sbjct: 4   LGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLF 63

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F  M +  I P  + I   L AC+ A  +  G    +      GI+      + ++ L G
Sbjct: 64  FRGMLLQGINPGEVGISIFLSACTDAREITIG-RSIQLAILGTGIEEESIVQTALVSLYG 122

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           + G   +A  +   M +  D V W A++ A   + +   A+   ++ ++LD   P    L
Sbjct: 123 KLGHCTDAASVFLRMSHR-DVVAWSAMVAAYARNGHPREALGLFRQ-MDLDGVAPNKVTL 180

Query: 480 LSNIYANSQKWD--EVAEVRKTMRARGITKE-----------PGCSWIE---------VN 517
           +S + A +   D    A + + + A+GI                C  IE         V 
Sbjct: 181 VSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVE 240

Query: 518 KQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLE 564
           K + A++   +++ + D+ N+    ++ ++   G AP++   +  L+
Sbjct: 241 KNVVAWSAISAAYARNDR-NRDAIRVLHRMDLEGLAPNSTTFVSVLD 286


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/602 (36%), Positives = 358/602 (59%), Gaps = 8/602 (1%)

Query: 50   CYQRDLP--RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
            CY +D      +K +  +   G   + VT+A  +  C     + E+K+VH  ++  GF  
Sbjct: 1123 CYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHD 1182

Query: 108  ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
               + N L+ M+ K  ++ EA+ +   MP+ + V+W  +I  + + +  ++A++    + 
Sbjct: 1183 FLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIR 1242

Query: 168  REGVRPNMFTYSAVLRAC----DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
             +G+  N  T  +VL AC    D L     +H  I+  GFESD +V+++LI +YAK G+L
Sbjct: 1243 EKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDL 1302

Query: 224  RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
             ++  +F+ +  +  + WN+++   A +   +EAL ++  M+  G   DQ + +  L A 
Sbjct: 1303 NSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAAT 1362

Query: 284  TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
              LA+LE G Q+H  V+K  ++ DL + NA +DMY KCG + D + +  + I +  +SW+
Sbjct: 1363 ANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWN 1422

Query: 342  TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
             +IS  A++G  Q+A + F  M     KP+++T V +L AC+H G V++G  ++ SM + 
Sbjct: 1423 ILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTRE 1482

Query: 402  YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
            +G+ PG EH  C+IDLLGR+G+L  A   I EMP  P+ + WR+LL AC++H N +LA  
Sbjct: 1483 FGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARK 1542

Query: 462  AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIH 521
             A+ +L LDP D   Y+L SN+ A S KW++V  +RK M +  I K+P CSW+++  ++H
Sbjct: 1543 TAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVH 1602

Query: 522  AFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAI 581
            +F + +  HPQ  +I+  L  L++     GY PDT++ L D++ EQKE ++  HSE+LA+
Sbjct: 1603 SFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLAL 1662

Query: 582  VFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641
             FGL++  +  T+RI KNLR+CGDCH+  K  + +  + IV+RDP R+HHF  G CSCGD
Sbjct: 1663 AFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGD 1722

Query: 642  YW 643
            YW
Sbjct: 1723 YW 1724



 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 166/457 (36%), Positives = 252/457 (55%), Gaps = 6/457 (1%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           GV+A+  TY   ++ C +   ++    V   +  G F    F+ + L++ H K   +E+A
Sbjct: 126 GVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDA 185

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC--- 185
             LF  M ER+VVSW  MI  Y      D +  +   MLR G+ P+ +T  +VLRA    
Sbjct: 186 SYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEG 245

Query: 186 DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             LII  Q+H  I ++G+ S   V   LI+ YAK G LR+A+ +   M  +DL    ++I
Sbjct: 246 GGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALI 305

Query: 246 GGFAQNSDVD-EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY-- 302
            G+A       +AL+L+K M +     D   L S+L  C  LA   LGTQ+H   LKY  
Sbjct: 306 TGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQP 365

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
            +D+ + NAL+DMY K G +EDA   F  M +K+VISW+++ISG A++GY   A+ L++ 
Sbjct: 366 SYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKK 425

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           M+    KPN +T + +LFACSH G   +G   F +M   Y I P  EHYSCM+DL  R G
Sbjct: 426 MESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQG 485

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
            L+EA  L+ ++  + +A  W A+LGA  ++    L   AA  + N+ P++   Y++L++
Sbjct: 486 LLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLAS 545

Query: 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQ 519
           IY+ +  WD+  ++RK M  R   K  G S+ +  K+
Sbjct: 546 IYSAAGLWDDAWKIRKLMEERSTKKNAGYSFFQATKK 582



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 136/430 (31%), Positives = 228/430 (53%), Gaps = 14/430 (3%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105
           F++     +L R  +A+  +  +  R D   Y ++++ C+ + A ++  L+H H+++ GF
Sbjct: 2   FSKIQSACNLGRLAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGF 61

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
             +  L   L+  +VK   +  A+ +FD MPER+VVSWT M+S Y      +KA  L   
Sbjct: 62  GSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSD 121

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           M   GV+ N FTY + LRAC SL  L    Q+   I K  F  ++FV+SAL+D ++K G+
Sbjct: 122 MRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGK 181

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           + +A  +F  M  RD+V WN++IGG+A     D++  +++ M R G   D  TL SVLRA
Sbjct: 182 MEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRA 241

Query: 283 CTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
                 L +  Q+H  +  L Y    I+   L++ Y K GSL  A  +   M++KD+ S 
Sbjct: 242 SAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSS 301

Query: 341 STMISGLAQNG-YSQEALKLFESMKVSRIKPNYITIVGVLFACSH-AGFVEDGWNHFKSM 398
           + +I+G A  G YS +AL LF+ M    I  + + +  +L  C++ A F      H  ++
Sbjct: 302 TALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFAL 361

Query: 399 K--KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
           K    Y +  G    + +ID+  ++G++++A +   EM  E + ++W +L+     H   
Sbjct: 362 KYQPSYDVAMG----NALIDMYAKSGEIEDAKRAFDEME-EKNVISWTSLISGYAKHGYG 416

Query: 457 DLAICAAKKI 466
            +A+   KK+
Sbjct: 417 HMAVSLYKKM 426



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/367 (31%), Positives = 200/367 (54%), Gaps = 9/367 (2%)

Query: 93   AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
             K +H   + G      F  N L+NM+ KF  +E A+ +FD+M  RN  SW+TM+S Y  
Sbjct: 763  GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 822

Query: 153  AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR----QLHCGIIKVGFESDVF 208
              + ++A+ L   M   GV PN F  ++++ AC     +     Q+H  ++K G   DV+
Sbjct: 823  VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 882

Query: 209  VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
            V +AL+  Y  +G + NA+ +F EMP  ++V W S++ G++ + +  E LN+Y+RM++ G
Sbjct: 883  VGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG 942

Query: 269  FAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAM 326
             + +Q+T  +V  +C  L    LG QV  H+++Y  +  + + N+L+ M+    S+E+A 
Sbjct: 943  VSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEAC 1002

Query: 327  SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
             VF  M + D+ISW+ MIS  A +G  +E+L+ F  M+    + N  T+  +L  CS   
Sbjct: 1003 YVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVD 1062

Query: 387  FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
             ++ G      + K  G+D      + ++ L   AG+ ++A +L+ +   E D ++W ++
Sbjct: 1063 NLKWGRGIHGLVVKL-GLDSNVCICNTLLTLYSEAGRSEDA-ELVFQAMTERDLISWNSM 1120

Query: 447  LGACKVH 453
            + AC V 
Sbjct: 1121 M-ACYVQ 1126



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 209/393 (53%), Gaps = 11/393 (2%)

Query: 96   VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC-DAK 154
            +H  V+  G +    + N LL ++ +    E+A+++F  M ER+++SW +M++ Y  D K
Sbjct: 1070 IHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGK 1129

Query: 155  MNDKALELLIFMLREGVRPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRS 211
              D  L++L  +L+ G   N  T+++ L AC +   LI  + +H  II  GF   + V +
Sbjct: 1130 CLD-GLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGN 1188

Query: 212  ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
            AL+ +Y KLG +  A+ V   MP  D V WN++IGG A+N + +EA+  YK ++  G  A
Sbjct: 1189 ALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPA 1248

Query: 272  DQSTLTSVLRACTGL-ALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSV 328
            +  T+ SVL AC+    LL+ G  +H H++   ++ D  + N+L+ MY KCG L  +  +
Sbjct: 1249 NYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYI 1308

Query: 329  FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
            F  +  K  I+W+ M++  A +G  +EALK+F  M+   +  +  +  G L A ++   +
Sbjct: 1309 FDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVL 1368

Query: 389  EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
            E+G      + K  G +      +  +D+ G+ G++ + +K++ + P     ++W  L+ 
Sbjct: 1369 EEGQQLHGLVIKL-GFESDLHVTNAAMDMYGKCGEMHDVLKMLPQ-PINRSRLSWNILIS 1426

Query: 449  ACKVHRNTDLAICAAKKILNLDPQ-DPGTYILL 480
            A   H     A     ++L L P+ D  T++ L
Sbjct: 1427 AFARHGCFQKARETFHEMLKLGPKPDHVTFVSL 1459



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 223/443 (50%), Gaps = 34/443 (7%)

Query: 69   GVRADSVTYAELIKCC-LARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
            GV  +    A LI  C  + +  +E   VH  V+  G   + ++   L++ +    L+  
Sbjct: 840  GVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYN 899

Query: 128  AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
            AQ LF++MP+ NVVSWT+++  Y D+    + L +   M +EGV  N  T++ V  +C  
Sbjct: 900  AQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGL 959

Query: 188  L---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
            L   ++  Q+   II+ GFE  V V ++LI +++    +  A  VF+ M   D++ WN++
Sbjct: 960  LEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAM 1019

Query: 245  IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
            I  +A +    E+L  +  M+      + +TL+S+L  C+ +  L+ G  +H  V+K   
Sbjct: 1020 ISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGL 1079

Query: 303  DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF-E 361
            D ++ + N LL +Y + G  EDA  VF  M ++D+ISW++M++   Q+G   + LK+  E
Sbjct: 1080 DSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAE 1139

Query: 362  SMKVSRIKPNYITIVGVLFACS-----------HAGFVEDGWNHFKSMKKFYGIDPGREH 410
             +++ ++  N++T    L ACS           HA  +  G++ F  +            
Sbjct: 1140 LLQMGKVM-NHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVG----------- 1187

Query: 411  YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
             + ++ + G+ G + EA K++  MP +PD VTW AL+G    +   + A+ A K I   +
Sbjct: 1188 -NALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGGHAENEEPNEAVKAYKLI--RE 1243

Query: 471  PQDPGTYILLSNIYANSQKWDEV 493
               P  YI + ++       D++
Sbjct: 1244 KGIPANYITMVSVLGACSAPDDL 1266



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/324 (32%), Positives = 167/324 (51%), Gaps = 5/324 (1%)

Query: 65   MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
            M+  GV  +  T+A +   C           V  H++  GFE    + N L++M   FS 
Sbjct: 938  MRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSS 997

Query: 125  LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            +EEA  +FD M E +++SW  MISAY    +  ++L    +M       N  T S++L  
Sbjct: 998  VEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSV 1057

Query: 185  C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
            C   D+L   R +H  ++K+G +S+V + + L+ +Y++ G   +AE VF  M  RDL+ W
Sbjct: 1058 CSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISW 1117

Query: 242  NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            NS++  + Q+    + L +   + + G   +  T  S L AC+    L     VH  ++ 
Sbjct: 1118 NSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIV 1177

Query: 302  YD-HD-LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
               HD LI+ NAL+ MY K G + +A  V   M Q D ++W+ +I G A+N    EA+K 
Sbjct: 1178 AGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKA 1237

Query: 360  FESMKVSRIKPNYITIVGVLFACS 383
            ++ ++   I  NYIT+V VL ACS
Sbjct: 1238 YKLIREKGIPANYITMVSVLGACS 1261



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 28/211 (13%)

Query: 51  YQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP--E 108
           Y  D     K M+ M    +  D V    ++  C    +      +H   L   ++P  +
Sbjct: 314 YSVDALDLFKEMNQMN---IGMDDVILCSMLNICANLASFALGTQIHAFALK--YQPSYD 368

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             + N L++M+ K   +E+A+  FD+M E+NV+SWT++IS Y        A+ L   M  
Sbjct: 369 VAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMES 428

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFES--------DVFVR----SALIDI 216
           +G +PN  T+ ++L AC         H G+   G E         ++  R    S ++D+
Sbjct: 429 KGFKPNDVTFLSLLFACS--------HTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDL 480

Query: 217 YAKLGELRNAECVFNEMPTR-DLVVWNSIIG 246
           +A+ G L  A  +  ++  + +  +W +I+G
Sbjct: 481 FARQGLLEEAYNLLCKIDIKHNASLWGAILG 511


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/592 (37%), Positives = 352/592 (59%), Gaps = 7/592 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A +    M   G++   +T   LI+ C     ++  K +H +VL  G   +  ++   ++
Sbjct: 215 AFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVD 274

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +E A+ +F +MP RN+VSW  MIS      +  ++ +L   ++R     ++ T
Sbjct: 275 MYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTT 334

Query: 178 YSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             ++L+ C    SL   + LH   I+  FES++ + +A++D+Y+K G L+ A  VFN M 
Sbjct: 335 IVSLLQGCSQTASLATGKILHGCAIR-SFESNLILSTAIVDLYSKCGSLKQATFVFNRMK 393

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            R+++ W +++ G AQN   ++AL L+ +M+  G AA+  T  S++ +C  L  L+ G  
Sbjct: 394 DRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRS 453

Query: 295 VHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSR-MIQKDVISWSTMISGLAQNG 351
           +H H+  L +  D++   AL+DMY KCG +  A  +FS   I KDV+ W++MI+G   +G
Sbjct: 454 IHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHG 513

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           +  +A+ ++  M    +KPN  T + +L ACSH+  VE G + F SM++ + I P  +HY
Sbjct: 514 HGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHY 573

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +C++DLL RAG+ +EA  LI +MP++P      ALL  C+ H+N +L I  + K+L LD 
Sbjct: 574 ACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDA 633

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
            +PG YI+LSNIYA +++WD+V  +R  MR RG+ K PG S +E    +H F   D+SHP
Sbjct: 634 MNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHP 693

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
             ++I   L+ L   +   GY PDT+ VL+D++ E K   +  HSE+LAI FGL++   G
Sbjct: 694 NWEEIYHFLESLRSAVETSGYVPDTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTPAG 753

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             IRI KNLR+CGDCHT  K  +K+  + I++RD  R+HHF +G CSCGDYW
Sbjct: 754 SLIRITKNLRVCGDCHTVTKYISKIVKREIIVRDANRFHHFSNGECSCGDYW 805



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 127/424 (29%), Positives = 237/424 (55%), Gaps = 9/424 (2%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+   +  DS +    +K C +    E    + +  +  G E   F+ + +++  VKF  
Sbjct: 121 MRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGK 180

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           + EAQ +FD MP ++VV W ++I  Y  A   D A +L   M   G++P+  T +++++A
Sbjct: 181 IGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQA 240

Query: 185 CDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C  +  L+    +H  ++ +G  +D+ V ++ +D+Y+K+G++ +A  VF +MPTR+LV W
Sbjct: 241 CGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSW 300

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N++I G  +N  V E+ +L+ R+ R+    D +T+ S+L+ C+  A L  G  +H   ++
Sbjct: 301 NAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIR 360

Query: 302 -YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
            ++ +LIL+ A++D+Y KCGSL+ A  VF+RM  ++VI+W+ M+ GLAQNG++++AL+LF
Sbjct: 361 SFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLF 420

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLG 419
             M+   I  N +T V ++ +C+H G ++ G + H    +  +  D    + + ++D+  
Sbjct: 421 AQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDI--VNMTALVDMYA 478

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL--NLDPQDPGTY 477
           + GK+  A ++        D V W +++    +H +   A+    K++   L P      
Sbjct: 479 KCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFL 538

Query: 478 ILLS 481
            LLS
Sbjct: 539 SLLS 542



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 182/360 (50%), Gaps = 10/360 (2%)

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
           K  H  +++     + F+   L+  +     LE A+ +FDQ  +   +    M+  Y  +
Sbjct: 49  KSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQS 108

Query: 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVR 210
               + LEL   M    +  +  + +  L+AC S +   +  ++    ++ G E + FV 
Sbjct: 109 GRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVG 168

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
           S++I    K G++  A+ VF+ MP +D+V WNSIIGG+ Q    D A  L+  M  +G  
Sbjct: 169 SSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIK 228

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSV 328
               T+TS+++AC G+  L+LG  +H +V  L   +D+++  + +DMY K G +E A  V
Sbjct: 229 PSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWV 288

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           F +M  ++++SW+ MISG  +NG   E+  LF  +  S    +  TIV +L  CS    +
Sbjct: 289 FYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASL 348

Query: 389 EDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
             G   H  +++ F   +      + ++DL  + G L++A  + + M  + + +TW A+L
Sbjct: 349 ATGKILHGCAIRSF---ESNLILSTAIVDLYSKCGSLKQATFVFNRMK-DRNVITWTAML 404



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 134/277 (48%), Gaps = 10/277 (3%)

Query: 179 SAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
           S +  +  +LI ++  H  II     +D FV + L+  Y+ L  L  A  VF++      
Sbjct: 36  SLLRESSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKG 95

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           ++ N+++ G+ Q+    E L L+  M+      D  + T  L+AC      E+G ++   
Sbjct: 96  LLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISS 155

Query: 299 VLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
            ++   + +  + ++++    K G + +A  VF  M  KDV+ W+++I G  Q G    A
Sbjct: 156 AVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVA 215

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF-YGIDPGRE--HYSC 413
            +LF  M  S IKP+ IT+  ++ AC   G ++ G    K M  +  G+  G +    + 
Sbjct: 216 FQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLG----KCMHGYVLGLGLGNDILVLTS 271

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
            +D+  + G ++ A  + ++MP   + V+W A++  C
Sbjct: 272 FVDMYSKMGDIESARWVFYKMPTR-NLVSWNAMISGC 307


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/592 (39%), Positives = 357/592 (60%), Gaps = 6/592 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++ +  MQ  G+  +S T   ++       A+   K +H + +   F+    +   LL+
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLD 253

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM-LREGVRPNMF 176
           M+ K   L  A+ +FD M  RN VSW+ MI  Y  +    +ALEL   M L++ + P   
Sbjct: 254 MYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPV 313

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T  +VLRAC  L  L   R+LHC IIK+G   D+ + + L+ +YAK G + +A   F+ M
Sbjct: 314 TLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXM 373

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +D V +++I+ G  QN +   AL++++ M+ +G   D +T+  VL AC+ LA L+ G 
Sbjct: 374 NPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGF 433

Query: 294 QVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
             H +++   +  D ++ NAL+DMY KCG +  A  VF+RM + D++SW+ MI G   +G
Sbjct: 434 CSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHG 493

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
              EAL LF  +    +KP+ IT + +L +CSH+G V +G   F +M + + I P  EH 
Sbjct: 494 LGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHC 553

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
            CM+D+LGRAG + EA   I  MP+EPD   W ALL AC++H+N +L    +KKI +L P
Sbjct: 554 ICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGP 613

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
           +  G ++LLSNIY+ + +WD+ A +R T +  G+ K PGCSWIE+N  +HAF   D SH 
Sbjct: 614 ESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHL 673

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
           Q+ +IN+ L+ L+ ++  +GY  + ++V QD+E E+KE  + YHSEKLAI FG+++L  G
Sbjct: 674 QLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAG 733

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + I + KNLR+CGDCH   K    +  + I +RD  R+HHF++G C+CGD+W
Sbjct: 734 RPILVTKNLRVCGDCHAAIKFMTVITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 141/442 (31%), Positives = 227/442 (51%), Gaps = 20/442 (4%)

Query: 19  RQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYA 78
           R F     P V   N I R           + +      A+   H+M   GVR +  TY 
Sbjct: 64  RLFDEIPNPSVILWNQIIR----------AYAWNGPFDGAIDLYHSMLHLGVRPNKYTYP 113

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
            ++K C    A+E+   +H+H    G E + F+   L++ + K  +L EAQ LF  M  R
Sbjct: 114 FVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR 173

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLH 195
           +VV+W  MI+      + D A++L++ M  EG+ PN  T   VL        L   + LH
Sbjct: 174 DVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALH 233

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
              ++  F++ V V + L+D+YAK   L  A  +F+ M  R+ V W+++IGG+  +  + 
Sbjct: 234 GYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMK 293

Query: 256 EALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNAL 312
           EAL L+ +M  +        TL SVLRAC  L  L  G ++H +++K     D++L N L
Sbjct: 294 EALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTL 353

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           L MY KCG ++DA+  F  M  KD +S+S ++SG  QNG +  AL +F  M++S I P+ 
Sbjct: 354 LSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDL 413

Query: 373 ITIVGVLFACSHAGFVEDGW-NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            T++GVL ACSH   ++ G+ +H   + + +  D      + +ID+  + GK+  A ++ 
Sbjct: 414 TTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDT--LICNALIDMYSKCGKISFAREVF 471

Query: 432 HEMPYEPDAVTWRALLGACKVH 453
           + M    D V+W A++    +H
Sbjct: 472 NRMDRH-DIVSWNAMIIGYGIH 492



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 123/422 (29%), Positives = 215/422 (50%), Gaps = 15/422 (3%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
            Y  L++ C+   ++ EAK +H H L      ++ +++ L  +++  + +  A+ LFD++
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEI 69

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR--- 192
           P  +V+ W  +I AY      D A++L   ML  GVRPN +TY  VL+AC  L+ +    
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGV 129

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           ++H      G ESDVFV +AL+D YAK G L  A+ +F+ M  RD+V WN++I G +   
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNN 310
             D+A+ L  +M+  G   + ST+  VL        L  G  +H + ++  +D+ +++  
Sbjct: 190 LCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGT 249

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV-SRIK 369
            LLDMY KC  L  A  +F  M  ++ +SWS MI G   +   +EAL+LF+ M +   + 
Sbjct: 250 GLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMD 309

Query: 370 PNYITIVGVLFACSHAGFVEDGWN---HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
           P  +T+  VL AC+    +  G     +   +     I  G      ++ +  + G + +
Sbjct: 310 PTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNT----LLSMYAKCGVIDD 365

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           A++    M    D+V++ A++  C  + N  +A+ +  +++ L   DP    +L  + A 
Sbjct: 366 AIRFFDXMN-PKDSVSFSAIVSGCVQNGNAAVAL-SIFRMMQLSGIDPDLTTMLGVLPAC 423

Query: 487 SQ 488
           S 
Sbjct: 424 SH 425



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 164/340 (48%), Gaps = 17/340 (5%)

Query: 167 LREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
           LR  V+ N   Y  +L AC    SL   +++H   +K    +D  V   L  +Y    ++
Sbjct: 3   LRXEVKNN---YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQV 59

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
             A  +F+E+P   +++WN II  +A N   D A++LY  M   G   ++ T   VL+AC
Sbjct: 60  VLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKAC 119

Query: 284 TGLALLELGTQVHVH--VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
           +GL  +E G ++H H  +   + D+ +  AL+D Y KCG L +A  +FS M  +DV++W+
Sbjct: 120 SGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWN 179

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
            MI+G +  G   +A++L   M+   I PN  TIVGVL     A        H K++  +
Sbjct: 180 AMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEA----KALGHGKALHGY 235

Query: 402 ---YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
                 D G    + ++D+  +   L  A K+   M    + V+W A++G          
Sbjct: 236 CVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVR-NEVSWSAMIGGYVXSDCMKE 294

Query: 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRK 498
           A+    +++  D  DP T + L ++     K  +++  RK
Sbjct: 295 ALELFDQMILKDAMDP-TPVTLGSVLRACAKLTDLSRGRK 333


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/630 (37%), Positives = 366/630 (58%), Gaps = 19/630 (3%)

Query: 21  FSLTITPPVASCNTITRN--SSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYA 78
           FS    P +   NT+ R   S    DD            A+    +M+  G   ++ T  
Sbjct: 71  FSQVKEPNIFLWNTMIRGLVSKDCFDD------------AIHLYGSMRGGGFLPNNFTIP 118

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
            ++K C  +  V     +H+ ++  G++ + F+   LL+++VK    ++A  +FD +P++
Sbjct: 119 FVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDK 178

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLH 195
           NVVSWT +I+ Y  +    +A+     +L  G++P+ F+   VL AC  L        + 
Sbjct: 179 NVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWID 238

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
             I   G   +VFV ++L+D+Y K G L  A  +F+ MP +D+V W+++I G+A N    
Sbjct: 239 RYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQ 298

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
           +AL+L+ +M+      D  T+  VL AC  L  L+LG      + +  +  + +L  AL+
Sbjct: 299 QALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALI 358

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           DMY KCGS+  A  +F+ M +KD + W+ M+ GL+ NG+++    LF  ++   I+P+  
Sbjct: 359 DMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDEN 418

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
           T +G+L  C+H GFV +G   F +MK+ + + P  EHY CM+DLLGRAG L EA +LI+ 
Sbjct: 419 TFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINN 478

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
           MP +P+AV W ALLG CK+H++T LA    KK++ L+P + G Y+ LSNIY+ + +W+E 
Sbjct: 479 MPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEA 538

Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYA 553
            ++R TM+ + I K   CSWIE++  +H F V D SH   +KI   L  L ++L  VG+ 
Sbjct: 539 EKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHV 598

Query: 554 PDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLT 613
           P T +VL D+E E+KE  + YHSEKLA+ FGL++      IR+ KNLR+CGDCH   KL 
Sbjct: 599 PTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLI 658

Query: 614 AKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +K+  + I+IRD  R+H F DG+CSC DYW
Sbjct: 659 SKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 194/362 (53%), Gaps = 9/362 (2%)

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
           + K +H  +L    + + +L+N++L   + F     ++++F Q+ E N+  W TMI    
Sbjct: 31  QLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLV 90

Query: 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVF 208
                D A+ L   M   G  PN FT   VL+AC   + +R   ++H  ++K G++ DVF
Sbjct: 91  SKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVF 150

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           V+++L+ +Y K     +A  VF+++P +++V W +II G+  +    EA+  +K++   G
Sbjct: 151 VKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMG 210

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAM 326
              D  +L  VL AC  L     G  +  ++       ++ +  +LLDMY KCG+LE A 
Sbjct: 211 LKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERAN 270

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            +FS M +KD++SWSTMI G A NG  Q+AL LF  M+   +KP+  T+VGVL AC+  G
Sbjct: 271 LIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLG 330

Query: 387 FVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
            ++ G W      +  +  +P     + +ID+  + G + +A ++   M  + D V W A
Sbjct: 331 ALDLGIWASSLMDRNEFLSNPVLG--TALIDMYSKCGSVTQAWEIFTAMK-KKDRVVWNA 387

Query: 446 LL 447
           ++
Sbjct: 388 MM 389


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/630 (37%), Positives = 366/630 (58%), Gaps = 19/630 (3%)

Query: 21  FSLTITPPVASCNTITRN--SSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYA 78
           FS    P +   NT+ R   S    DD            A+    +M+  G   ++ T  
Sbjct: 71  FSQVKEPNIFLWNTMIRGLVSKDCFDD------------AIHLYGSMRGGGFLPNNFTIP 118

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
            ++K C  +  V     +H+ ++  G++ + F+   LL+++VK    ++A  +FD +P++
Sbjct: 119 FVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDK 178

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLH 195
           NVVSWT +I+ Y  +    +A+     +L  G++P+ F+   VL AC  L        + 
Sbjct: 179 NVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWID 238

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
             I   G   +VFV ++L+D+Y K G L  A  +F+ MP +D+V W+++I G+A N    
Sbjct: 239 RYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQ 298

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
           +AL+L+ +M+      D  T+  VL AC  L  L+LG      + +  +  + +L  AL+
Sbjct: 299 QALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALI 358

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           DMY KCGS+  A  +F+ M +KD + W+ M+ GL+ NG+++    LF  ++   I+P+  
Sbjct: 359 DMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDEN 418

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
           T +G+L  C+H GFV +G   F +MK+ + + P  EHY CM+DLLGRAG L EA +LI+ 
Sbjct: 419 TFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINN 478

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
           MP +P+AV W ALLG CK+H++T LA    KK++ L+P + G Y+ LSNIY+ + +W+E 
Sbjct: 479 MPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEA 538

Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYA 553
            ++R TM+ + I K   CSWIE++  +H F V D SH   +KI   L  L ++L  VG+ 
Sbjct: 539 EKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHV 598

Query: 554 PDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLT 613
           P T +VL D+E E+KE  + YHSEKLA+ FGL++      IR+ KNLR+CGDCH   KL 
Sbjct: 599 PTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLI 658

Query: 614 AKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +K+  + I+IRD  R+H F DG+CSC DYW
Sbjct: 659 SKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 193/362 (53%), Gaps = 9/362 (2%)

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
           + K +H  +L    + + +L+N++L   + F     ++++F Q+ E N+  W TMI    
Sbjct: 31  QLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLV 90

Query: 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVF 208
                D A+ L   M   G  PN FT   VL+AC   + +R   ++H  ++K G++ DVF
Sbjct: 91  SKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVF 150

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           V+++L+ +Y K     +A  VF+++P +++V W +II G+  +    EA+  +K++   G
Sbjct: 151 VKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMG 210

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAM 326
              D  +L  VL AC  L     G  +  ++       ++ +  +LLDMY KCG+LE A 
Sbjct: 211 LKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERAN 270

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            +FS M +KD++SWSTMI G A NG  Q+AL LF  M+   +KP+  T+VGVL AC+  G
Sbjct: 271 LIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLG 330

Query: 387 FVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
            ++ G W      +  +  +P     + +ID+  + G + +A ++   M    D V W A
Sbjct: 331 ALDLGIWASSLMDRNEFLSNPVLG--TALIDMYSKCGSVTQAWEIFTAMK-RKDRVVWNA 387

Query: 446 LL 447
           ++
Sbjct: 388 MM 389


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/562 (40%), Positives = 337/562 (59%), Gaps = 7/562 (1%)

Query: 88  HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMI 147
           H +   + +H   L         ++  LL ++ +  LL  AQ +FD+MP  + VSWT +I
Sbjct: 85  HPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALI 144

Query: 148 SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFE 204
           +AY DA    +A+ +       G+RP+ FT   VL AC  +  L     +     + G  
Sbjct: 145 TAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIA 204

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
             VFV +A +D+Y K GE+  A  VF++M  +D V W +++GG+A N    EAL+L+  M
Sbjct: 205 QSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAM 264

Query: 265 KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL---ILNNALLDMYCKCGS 321
           +  G   D   +   L ACT L  L+LG Q  + ++ +D  L   +L  AL+DMY KCGS
Sbjct: 265 QAEGVRPDCYAVAGALSACTRLGALDLGRQA-IRMVDWDEFLDNPVLGTALIDMYAKCGS 323

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
             +A  VF +M +KD+I W+ MI GL   G+ + A  L   M+ S +K N  T +G+L +
Sbjct: 324 TAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCS 383

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
           C+H G ++DG  +F +M K Y I P  EHY C++DLL RAG LQEA +LI +MP   +AV
Sbjct: 384 CTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAV 443

Query: 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
              ALLG CK+HRN +LA     +++ L+P + G Y++LSNIY+N  +W++ A++R  M+
Sbjct: 444 ILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMK 503

Query: 502 ARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQ 561
            +G+ K P CSW+E   ++H F V D SHP  D+I K L  L  ++  +GY P T  V+ 
Sbjct: 504 EKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMF 563

Query: 562 DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTI 621
           D+E E+KE ++ +HSEKLAI F L+    G+TIR+ KNLR+C DCHT  KL +++ ++ I
Sbjct: 564 DVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREI 623

Query: 622 VIRDPIRYHHFQDGNCSCGDYW 643
           ++RD  R+H F+DG+CSC DYW
Sbjct: 624 IVRDNNRFHCFRDGSCSCNDYW 645


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/636 (37%), Positives = 370/636 (58%), Gaps = 38/636 (5%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105
           F       D   A+K    M   G+  +S T+  L+K C    A +E + +H HVL  G+
Sbjct: 106 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGY 165

Query: 106 EPETFLVNILLNMHVKFSLLEEA-------------------------------QVLFDQ 134
           + + F+   L++++V+   LE+A                               Q LFD+
Sbjct: 166 DLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDE 225

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIIL 191
           +P ++VVSW  MIS Y +     +ALEL   M++  +RP+  T   V+ AC    S+ + 
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELG 285

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           RQ+H  I   GF S++ + ++L+D+Y+K GEL  A  +F  +  +D++ WN++IGG+   
Sbjct: 286 RQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHM 345

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI---- 307
           +   EAL L++ M R+G   +  T+ S+L AC  L  +++G  +HV++ K          
Sbjct: 346 NLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASS 405

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           L  +L+DMY KCG +E A  VF+ ++ K + SW+ MI G A +G +  A  +F  M+   
Sbjct: 406 LRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIG 465

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           I+P+ IT VG+L ACS +G ++ G + F++M + Y I P  EHY CMIDLLG +G  +EA
Sbjct: 466 IEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEA 525

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487
            ++I+ M  EPD V W +LL ACK+  N +L    A+ ++ ++P++PG Y+LLSNIYA +
Sbjct: 526 EEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATA 585

Query: 488 QKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL 547
            +W+EVA++R  +  +G+ K PGCS IE++  +H F + D  HP+  +I   L+ +   L
Sbjct: 586 GRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLL 645

Query: 548 VGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCH 607
              G+ PDT+ VLQ++E E KE ++++HSEKLAI FGL+S   G  + I KNLR+C +CH
Sbjct: 646 EKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCH 705

Query: 608 TFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
              KL +K+  + I+ RD  R+HHF+DG CSC DYW
Sbjct: 706 EATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 230/454 (50%), Gaps = 44/454 (9%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHV---KFSLLEEAQVLFDQMPERNVVSWTT 145
            ++  +L+H  ++  G     + ++ LL + V    F  L  A  +F+ + E N++ W T
Sbjct: 45  TLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNT 104

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVG 202
           M   +  +     AL+L + M+  G+ PN +T+  +L++C      +   Q+H  ++K+G
Sbjct: 105 MFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLG 164

Query: 203 FESDVFVRSALIDIYAKLGELRNAECV-------------------------------FN 231
           ++ D+FV ++LI +Y + G L +A  V                               F+
Sbjct: 165 YDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFD 224

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           E+P +D+V WN++I G+A+  +  EAL L+K M +     D+ST+ +V+ AC     +EL
Sbjct: 225 EIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIEL 284

Query: 292 GTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G QVH  +    +  +L + N+L+D+Y KCG LE A  +F  ++ KDVISW+T+I G   
Sbjct: 285 GRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTH 344

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGR 408
               +EAL LF+ M  S  +PN +T++ +L AC+H G ++ G W H    K+        
Sbjct: 345 MNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNAS 404

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA--ICAAKKI 466
              + +ID+  + G ++ A ++ + + ++    +W A++    +H   D A  I +  + 
Sbjct: 405 SLRTSLIDMYAKCGDIEAAHQVFNSILHK-SLSSWNAMIFGFAMHGRADAAFDIFSRMRK 463

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTM 500
           + ++P D  T++ L +  + S   D    + +TM
Sbjct: 464 IGIEPDDI-TFVGLLSACSRSGMLDLGRHIFRTM 496



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 151/306 (49%), Gaps = 38/306 (12%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALID---IYAKLGELRNAECVFNEMPTR 236
           ++L  C +L  LR +H  +IK G  +  +  S L++   I      L  A  VF  +   
Sbjct: 38  SLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEP 97

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           +L++WN++  G A +SD   AL LY  M   G   +  T   +L++C      + G Q+H
Sbjct: 98  NLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIH 157

Query: 297 VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSR-----------MIQ--------- 334
            HVLK  YD DL ++ +L+ +Y + G LEDA  VF R           +I+         
Sbjct: 158 GHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIE 217

Query: 335 -----------KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
                      KDV+SW+ MISG A+ G  +EAL+LF+ M  + I+P+  T+V V+ AC+
Sbjct: 218 SAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACA 277

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
            +G +E G     S    +G     +  + ++DL  + G+L+ A  L   + Y+ D ++W
Sbjct: 278 QSGSIELG-RQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYK-DVISW 335

Query: 444 RALLGA 449
             L+G 
Sbjct: 336 NTLIGG 341


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/584 (39%), Positives = 344/584 (58%), Gaps = 6/584 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   G R DS+T   ++        +     VH +VL  GFE    +   L++M+ K   
Sbjct: 122 MSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGS 181

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +  A+V+FD M  R VVSW +MI  Y  +   + A+ +   ML EGV+P   T    L A
Sbjct: 182 VSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHA 241

Query: 185 CDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C  L  L +   +H  + ++  +SDV V ++LI +Y+K   +  A  +F  +  + LV W
Sbjct: 242 CADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSW 301

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N++I G+AQN  V+EALN +  M+      D  T+ SV+ A   L++      +H  V++
Sbjct: 302 NAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIR 361

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
              D ++ +  AL+DMY KCG++  A  +F  M  + VI+W+ MI G   +G  + +++L
Sbjct: 362 RFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVEL 421

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F+ MK   IKPN IT +  L ACSH+G VE+G   F+SMKK YGI+P  +HY  M+DLLG
Sbjct: 422 FKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLG 481

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           RAG+L +A   I +MP +P    + A+LGACK+H+N DL   AA +I  L+P D G ++L
Sbjct: 482 RAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVL 541

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           L+NIYA +  W +VA+VR  M   G+ K PGCS +E+  ++H+F    +SHPQ  KI  +
Sbjct: 542 LANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSY 601

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
           L+ L+ ++   GY PDTN +  D+E + K   +  HSEKLAI FGL++ + G  I IRKN
Sbjct: 602 LETLVDEIRAAGYVPDTNSI-HDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKN 660

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           LR+CGDCH   K  + +  + I++RD  R+H F+DG CSCGDYW
Sbjct: 661 LRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 131/411 (31%), Positives = 209/411 (50%), Gaps = 9/411 (2%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           +     L  A+     M+   VR     +  L+K C     ++  K +H  V++ GF   
Sbjct: 5   YAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWN 64

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F +  ++NM+ K   + +A  +FD+MPER++V W TMIS Y        AL L++ M  
Sbjct: 65  LFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSE 124

Query: 169 EGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           EG RP+  T  ++L A     +LR    +H  +++ GFES V V +AL+D+Y+K G +  
Sbjct: 125 EGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSI 184

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F+ M  R +V WNS+I G+ Q+ D + A+ ++++M   G      T+   L AC  
Sbjct: 185 ARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACAD 244

Query: 286 LALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L  LE G  VH  V  LK D D+ + N+L+ MY KC  ++ A  +F  +  K ++SW+ M
Sbjct: 245 LGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAM 304

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFY 402
           I G AQNG   EAL  F  M+   IKP+  T+V V+ A +         W H   +++F 
Sbjct: 305 ILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRF- 363

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            +D      + ++D+  + G +  A KL  +M      +TW A++     H
Sbjct: 364 -LDKNVFVMTALVDMYAKCGAIHTARKLF-DMMNARHVITWNAMIDGYGTH 412



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/251 (34%), Positives = 142/251 (56%), Gaps = 5/251 (1%)

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVG 202
           M+  Y  +   D AL     M  + VRP ++ ++ +L+ C     L   +++H  +I  G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
           F  ++F  + ++++YAK  ++ +A  +F+ MP RDLV WN++I G+AQN     AL L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCG 320
           RM   G   D  T+ S+L A     LL +G  VH +VL+   + ++N   AL+DMY KCG
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
           S+  A  +F  M  + V+SW++MI G  Q+G ++ A+ +F+ M    ++P  +T++G L 
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 381 ACSHAGFVEDG 391
           AC+  G +E G
Sbjct: 241 ACADLGDLERG 251



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 12/314 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           +S++D + +     D   AM     M   GV+  +VT    +  C     +E  K VH  
Sbjct: 201 NSMIDGYVQ---SGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKL 257

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           V     + +  ++N L++M+ K   ++ A  +F  +  + +VSW  MI  Y      ++A
Sbjct: 258 VDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEA 317

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDI 216
           L     M    ++P+ FT  +V+ A   L I RQ   +H  +I+   + +VFV +AL+D+
Sbjct: 318 LNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDM 377

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           YAK G +  A  +F+ M  R ++ WN++I G+  +     ++ L+K MK+     +  T 
Sbjct: 378 YAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITF 437

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM 332
              L AC+   L+E G       +K D+ +        A++D+  + G L  A     +M
Sbjct: 438 LCALSACSHSGLVEEGL-CFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKM 496

Query: 333 -IQKDVISWSTMIS 345
            I+  +  +  M+ 
Sbjct: 497 PIKPGITVYGAMLG 510


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/512 (42%), Positives = 332/512 (64%), Gaps = 7/512 (1%)

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSLIILR---QL 194
           NV  W T+I  Y +   +  A+ L   M   G V P+  TY  +L+A   +  +R    +
Sbjct: 84  NVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETI 143

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
           H  +I+ GF S ++V+++L+ +YA  G++ +A  VF++MP +DLV WNS+I GFA+N   
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNAL 312
           +EAL LY  M   G   D  T+ S+L AC  +  L LG + HV+++K     +L  +N L
Sbjct: 204 EEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVL 263

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR-IKPN 371
           LD+Y +CG +E+A ++F  M+ K+ +SW+++I GLA NG  +EA++LF++M+    + P 
Sbjct: 264 LDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPC 323

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            IT VG+L+ACSH G V++G+ +F+ M + Y I+P  EH+ CM+DLL RAG++++A + I
Sbjct: 324 EITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYI 383

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
            +MP +P+ V WR LLGAC VH ++DLA  A  KIL L+P   G Y+LLSN+YA+ Q+W 
Sbjct: 384 LKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWS 443

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
           +V ++RK M   G+ K PG S +EV  ++H F + D SHPQ D I   LK +  +L   G
Sbjct: 444 DVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEG 503

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           Y P  + V  D+E E+KE+++ YHSEK+AI F L+S  +   IR+ KNL++C DCH   K
Sbjct: 504 YVPQISNVYVDVEEEEKENALVYHSEKIAIAFMLISTPERWPIRVVKNLKVCADCHLAIK 563

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L +K+ N+ IV+RD  R+HHF++G+CSC DYW
Sbjct: 564 LVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 184/370 (49%), Gaps = 23/370 (6%)

Query: 14  PSSQARQFSLTITPPVASC--NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHG-V 70
           P S A +    I  P+     NT+ R  + + +  +     R+          M+  G V
Sbjct: 68  PMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYRE----------MRASGFV 117

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
             D+ TY  L+K       V   + +H+ V+  GF    ++ N LL+++     +  A  
Sbjct: 118 EPDTHTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYK 177

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DS 187
           +FD+MPE+++V+W ++I+ + +    ++AL L   M  +G++P+ FT  ++L AC    +
Sbjct: 178 VFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGA 237

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L + ++ H  +IKVG   ++   + L+D+YA+ G +  A+ +F+EM  ++ V W S+I G
Sbjct: 238 LTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG 297

Query: 248 FAQNSDVDEALNLYKRMK-RAGFAADQSTLTSVLRACTGLALLELGTQVHVHV---LKYD 303
            A N    EA+ L+K M+ + G    + T   +L AC+   +++ G +    +    K +
Sbjct: 298 LAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIE 357

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFES 362
             +     ++D+  + G ++ A     +M +Q +V+ W T++     +G S   L     
Sbjct: 358 PRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSD--LAELAR 415

Query: 363 MKVSRIKPNY 372
           MK+ +++PN+
Sbjct: 416 MKILQLEPNH 425


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/591 (39%), Positives = 349/591 (59%), Gaps = 6/591 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++ +  MQ  G R DS+T   ++       ++   + +H + +  GFE    +   L++
Sbjct: 260 ALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVD 319

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +  A+++FD+M  + VVSW +MI  Y        A+E+   M+ E V     T
Sbjct: 320 MYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVT 379

Query: 178 YSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
               L AC  L  + Q   +H  + ++   SDV V ++LI +Y+K   +  A  +F  + 
Sbjct: 380 VMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQ 439

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            + LV WN++I G+AQN  ++EA++ + +M+      D  T+ SV+ A   L++L     
Sbjct: 440 HKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKW 499

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  V++   D ++ +  AL+DMY KCG++  A  +F  M ++ V +W+ MI G   +G 
Sbjct: 500 IHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGL 559

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            + AL+LFE MK   IKPN +T + VL ACSH+G VE+G+ +F SMKK YG++P  +HY 
Sbjct: 560 GKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYG 619

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
            M+DLLGRA +L EA   I +MP EP    + A+LGAC++H+N +L   AA +I +LDP 
Sbjct: 620 AMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPD 679

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           D G ++LL+NIYA +  WD+VA VR TM  +GI K PG S +E+  ++H F    +SHPQ
Sbjct: 680 DGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQ 739

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
             KI   L+ L  ++   GY PDTN V  D+E   KE  +  HSEKLAI F L++ + G 
Sbjct: 740 AKKIYAFLETLGNRIKAAGYMPDTNSV-HDVEDVVKEQLLNSHSEKLAIAFSLLNTSPGT 798

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           TI +RKNLR+CGDCH   K  + +  + I++RD  R+HHF+DG CSCGDYW
Sbjct: 799 TIHLRKNLRVCGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 134/421 (31%), Positives = 213/421 (50%), Gaps = 22/421 (5%)

Query: 39  SSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHN 98
           +SSL D  + FC              M+  GVR     +  L+K C     + + K +H 
Sbjct: 153 NSSLDDAVSFFC-------------RMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHC 199

Query: 99  HVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
            ++  GF    F +  ++NM+ K  L+EEA  +FD+MPER++V W T+IS Y        
Sbjct: 200 QLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKT 259

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRA---CDSLIILRQLHCGIIKVGFESDVFVRSALID 215
           ALEL++ M  EG RP+  T  ++L A     SL I R +H   ++ GFES V V +AL+D
Sbjct: 260 ALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVD 319

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           +Y+K G +  A  +F+ M  + +V WNS+I G+ QN D   A+ ++++M          T
Sbjct: 320 MYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVT 379

Query: 276 LTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
           +   L AC  L  +E G  VH  +  L+   D+ + N+L+ MY KC  ++ A  +F  + 
Sbjct: 380 VMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQ 439

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-W 392
            K ++SW+ MI G AQNG   EA+  F  M++  IKP+  T+V V+ A +    +    W
Sbjct: 440 HKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKW 499

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
            H   ++    +D      + ++D+  + G +  A KL  +M  E    TW A++     
Sbjct: 500 IHGLVIRTC--LDKNVFVATALVDMYAKCGAVHTARKLF-DMMDERHVTTWNAMIDGYGT 556

Query: 453 H 453
           H
Sbjct: 557 H 557



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 161/297 (54%), Gaps = 5/297 (1%)

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           ++  G   E      L+++  KF  L EA  +F  + ++    + TM+  Y      D A
Sbjct: 100 IIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDA 159

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDI 216
           +     M  +GVRP ++ ++ +L+ C     LR   ++HC +I  GF S+VF  + ++++
Sbjct: 160 VSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNM 219

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           YAK   +  A  +F+ MP RDLV WN+II G+AQN     AL L  RM+  G   D  T+
Sbjct: 220 YAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITI 279

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQ 334
            S+L A   +  L +G  +H + ++   +  +N   AL+DMY KCGS+  A  +F RM  
Sbjct: 280 VSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTG 339

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           K V+SW++MI G  QNG    A+++F+ M   +++   +T++G L AC+  G VE G
Sbjct: 340 KTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQG 396



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 145/270 (53%), Gaps = 6/270 (2%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           +L  C S+  L Q    IIK G  S+   ++ L+ ++ K G L  A  VF  +  +   +
Sbjct: 83  LLELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDEL 142

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           +++++ G+A+NS +D+A++ + RM+  G        T +L+ C   A L  G ++H  ++
Sbjct: 143 YHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLI 202

Query: 301 --KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
              +  ++     +++MY KC  +E+A  +F RM ++D++ W+T+ISG AQNG+ + AL+
Sbjct: 203 VNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALE 262

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDL 417
           L   M+    +P+ ITIV +L A +  G +  G + H  SM+   G +      + ++D+
Sbjct: 263 LVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRA--GFESFVNVSTALVDM 320

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
             + G +  A +LI +       V+W +++
Sbjct: 321 YSKCGSVGTA-RLIFDRMTGKTVVSWNSMI 349


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/562 (40%), Positives = 337/562 (59%), Gaps = 7/562 (1%)

Query: 88  HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMI 147
           H +   + +H   L         ++  LL ++ +  LL  AQ +FD+MP  + VSWT +I
Sbjct: 132 HPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALI 191

Query: 148 SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFE 204
           +AY DA    +A+ +       G+RP+ FT   VL AC  +  L     +     + G  
Sbjct: 192 TAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIA 251

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
             VFV +A +D+Y K GE+  A  VF++M  +D V W +++GG+A N    EAL+L+  M
Sbjct: 252 QSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAM 311

Query: 265 KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL---ILNNALLDMYCKCGS 321
           +  G   D   +   L ACT L  L+LG Q  + ++ +D  L   +L  AL+DMY KCGS
Sbjct: 312 QAEGVRPDCYAVAGALSACTRLGALDLGRQA-IRMVDWDEFLDNPVLGTALIDMYAKCGS 370

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
             +A  VF +M +KD+I W+ MI GL   G+ + A  L   M+ S +K N  T +G+L +
Sbjct: 371 TAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCS 430

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
           C+H G ++DG  +F +M K Y I P  EHY C++DLL RAG LQEA +LI +MP   +AV
Sbjct: 431 CTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAV 490

Query: 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
              ALLG CK+HRN +LA     +++ L+P + G Y++LSNIY+N  +W++ A++R  M+
Sbjct: 491 ILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMK 550

Query: 502 ARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQ 561
            +G+ K P CSW+E   ++H F V D SHP  D+I K L  L  ++  +GY P T  V+ 
Sbjct: 551 EKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMF 610

Query: 562 DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTI 621
           D+E E+KE ++ +HSEKLAI F L+    G+TIR+ KNLR+C DCHT  KL +++ ++ I
Sbjct: 611 DVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREI 670

Query: 622 VIRDPIRYHHFQDGNCSCGDYW 643
           ++RD  R+H F+DG+CSC DYW
Sbjct: 671 IVRDNNRFHCFRDGSCSCNDYW 692


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/571 (39%), Positives = 343/571 (60%), Gaps = 40/571 (7%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GV 171
           N L++++++    E A   F++MP+R++VSW +MIS Y     N +AL +   ML E  +
Sbjct: 212 NALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSL 271

Query: 172 RPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK--------- 219
           +P+ FT +++L AC   + L I +Q+H  I++   E+   V +ALI +YAK         
Sbjct: 272 KPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARL 331

Query: 220 ------------------------LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
                                   LG ++ A  +FN++  RD+V W ++I G+ QN   +
Sbjct: 332 IVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWN 391

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNALL 313
           +AL L++ M   G   +  TL ++L   + L +LE G Q+H   +K        + NAL+
Sbjct: 392 DALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALI 451

Query: 314 DMYCKCGSLEDAMSVFS-RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
            MY K G++  A  VF     +K+++SW++MI  LAQ+G  +EA+ LFE M    +KP++
Sbjct: 452 AMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDH 511

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           IT VGVL AC+H G VE G  ++  M + + I+P   HY+CMIDL GRAG LQEA   I 
Sbjct: 512 ITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIE 571

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
            MP EPD + W +LL +CK+H+N DLA  AA+++L +DP + G Y+ L+N+Y+   KW+ 
Sbjct: 572 SMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWEN 631

Query: 493 VAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGY 552
            A+ RK M+ RG+ KE G SWI +  ++HAF V D  HPQ D+I K +  + +++  +G+
Sbjct: 632 AAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGF 691

Query: 553 APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
            PDT  VL DLE E KE  ++YHSEKLAI FGL++  +   +RI KNLR+C DCH+  K 
Sbjct: 692 IPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSAIKF 751

Query: 613 TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +K+  + I++RD  R+HHF+DG+CSC DYW
Sbjct: 752 ISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 201/446 (45%), Gaps = 104/446 (23%)

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
           TF  N L++ + K    E ++ L  +MP+ + VSWT +I  Y    + D A+ +   M+ 
Sbjct: 76  TFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMIS 135

Query: 169 EGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           E V P+ FT S VL +C    +L I R++H  ++K+G  S V V ++L+++YAK G+   
Sbjct: 136 ERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVI 195

Query: 226 AECVFN-------------------------------EMPTRDLVVWNSIIGGFAQNSDV 254
           A+ VF+                               +MP RD+V WNS+I G++Q    
Sbjct: 196 AKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYN 255

Query: 255 DEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD-------- 305
            EAL ++ +M        D  TL S+L AC  L  L +G Q+H ++L+ + +        
Sbjct: 256 LEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNA 315

Query: 306 ---------------------------LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
                                      +I   +LLD Y K G+++ A  +F+++  +DV+
Sbjct: 316 LISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVV 375

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS-----------HAGF 387
           +W+ MI G  QNG   +AL+LF  M     +PN  T+  +L   S           HA  
Sbjct: 376 AWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASA 435

Query: 388 VEDGWNHFKSM-----------------KKFYGIDPGREH---YSCMIDLLGRAGKLQEA 427
           ++ G +   S+                 K+ + +  G++    ++ MI  L + G  +EA
Sbjct: 436 IKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEA 495

Query: 428 VKLIHEM---PYEPDAVTWRALLGAC 450
           + L   M     +PD +T+  +L AC
Sbjct: 496 INLFERMLSVGMKPDHITYVGVLSAC 521



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 117/258 (45%), Gaps = 65/258 (25%)

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           R +HC IIK G    V++ + L+  YAK G LR A  VF+EMP +    WN++I G+A+ 
Sbjct: 30  RSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQ 89

Query: 252 SD-------------------------------VDEALNLYKRMKRAGFAADQSTLTSVL 280
            +                                D A+ ++ +M        Q T+++VL
Sbjct: 90  GNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVL 149

Query: 281 RACTGLALLELGTQVHVHVLK-----------------------------YDHDLILN-- 309
            +C     L++G ++H  V+K                             +D   + N  
Sbjct: 150 SSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNIS 209

Query: 310 --NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM-KVS 366
             NAL+ +Y + G  E A S F +M  +D++SW++MISG +Q GY+ EAL +F  M    
Sbjct: 210 TWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEP 269

Query: 367 RIKPNYITIVGVLFACSH 384
            +KP+  T+  +L AC++
Sbjct: 270 SLKPDNFTLASILSACAN 287



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 95/257 (36%), Gaps = 64/257 (24%)

Query: 292 GTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G  VH  ++K    L   L N L+  Y K GSL  A  VF  M  K   SW+T+ISG A+
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 350 N--------------------------GYSQ-----EALKLFESMKVSRIKPNYITIVGV 378
                                      GY+Q      A+ +F  M   R+ P+  T+  V
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 379 LFACS-----------HAGFVEDGWNH----FKSMKKFYGI--DP-------------GR 408
           L +C+           H+  V+ G         S+   Y    DP               
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
             ++ +I L  ++G+ + A     +MP + D V+W +++           A+    K+LN
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMP-DRDIVSWNSMISGYSQQGYNLEALAIFSKMLN 267

Query: 469 LDPQDPGTYILLSNIYA 485
                P  + L S + A
Sbjct: 268 EPSLKPDNFTLASILSA 284


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 251/678 (37%), Positives = 370/678 (54%), Gaps = 81/678 (11%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKC-CLARHAVEEAKLVHNHVLSGGF 105
           T + +  D   A++   AM+    + D  T+A ++    L  +   +   +H  V+  G 
Sbjct: 120 TGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGI 179

Query: 106 EPETFLVNILLNMHVK---------FSLLEEAQVLFDQMPERNVVSWTT----------- 145
           E    ++N LL+++VK          SL+  A+ LFD+MP+RN   WTT           
Sbjct: 180 EIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDL 239

Query: 146 --------------------MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
                               MIS Y    + + AL L   M   GV+ +  TY++V+ AC
Sbjct: 240 TGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISAC 299

Query: 186 DS---LIILRQLHCGIIKVGFESD----VFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
                 ++ +Q+H  I+K     D    + V + LI +Y K G++  A  +F EMP +D+
Sbjct: 300 ADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDI 359

Query: 239 VVWNSIIGGF-------------------------------AQNSDVDEALNLYKRMKRA 267
           + WN+++ G+                               AQN   ++AL L+ +MK  
Sbjct: 360 ITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLD 419

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD--LILNNALLDMYCKCGSLEDA 325
           G+  +       + AC+ L  LE G Q+H  ++   HD  L + NA++ MY +CG +E A
Sbjct: 420 GYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAA 479

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
            ++F  M   D +SW++MI+ L Q+G+  +A++L+E M    I P+  T + VL ACSHA
Sbjct: 480 RTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHA 539

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G VE+G  +F SM + YGI PG +HY+ MIDL  RAGK  +A  +I  MP+E  A  W A
Sbjct: 540 GLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEA 599

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LL  C+ H N DL I AA+K+  L PQ  GTY+LLSN+YA+  +W++VA  RK MR RG+
Sbjct: 600 LLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGV 659

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            KEP CSW EV  ++H F V D+ HP++  I  +L+ L  ++  +GY PDT YVL D+E 
Sbjct: 660 KKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMES 719

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           E KE ++  HSEKLA+ FGLM L QG T+R+ KNLRICGDCH   K  +K+  + IV+RD
Sbjct: 720 EHKEYALSTHSEKLAVAFGLMKLPQGATVRVFKNLRICGDCHNAIKFMSKVVGREIVVRD 779

Query: 626 PIRYHHFQDGNCSCGDYW 643
             R+HHF++G CSC +YW
Sbjct: 780 GKRFHHFKNGECSCRNYW 797



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 141/509 (27%), Positives = 235/509 (46%), Gaps = 123/509 (24%)

Query: 77  YAELIKCC---LARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFD 133
           +A+L  CC   L+ +++  A+ VH HV++ GF+    +VN L++++ K S    A+ LFD
Sbjct: 15  FAQLNLCCPQNLSSYSL--ARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFD 72

Query: 134 QMPERNVVSWTTMISAYCD-------------------------------AKMND--KAL 160
           ++P+ +V++ TT+I+AY                                 + MND   A+
Sbjct: 73  EIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAI 132

Query: 161 ELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCG-----IIKVGFESDVFVRSALID 215
           EL   M     +P+ FT+++VL A  +LI   +  CG     ++K G E    V +AL+ 
Sbjct: 133 ELFRAMRWANFQPDDFTFASVLSA-STLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLS 191

Query: 216 IYAKLG---------ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV------------ 254
           +Y K            + +A  +F+EMP R+  +W ++I G+ +N D+            
Sbjct: 192 VYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTE 251

Query: 255 -------------------DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
                              ++AL L+++M+  G   D+ST TSV+ AC       LG QV
Sbjct: 252 QPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQV 311

Query: 296 HVHVLKY----DHDLILN---------------------------------NALLDMYCK 318
           H ++LK     D D +L+                                 N LL  Y  
Sbjct: 312 HAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVN 371

Query: 319 CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
            G +E+A S F++M +K++++W+ MISGLAQNG+ ++ALKLF  MK+   +PN     G 
Sbjct: 372 AGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGA 431

Query: 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP 438
           + ACS  G +E+G     +     G D      + MI +  R G ++ A  +   MP+  
Sbjct: 432 ITACSVLGALENG-RQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPF-V 489

Query: 439 DAVTWRALLGACKVHRNTDLAICAAKKIL 467
           D V+W +++ A   H +   AI   +++L
Sbjct: 490 DPVSWNSMIAALGQHGHGVKAIELYEQML 518


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/608 (37%), Positives = 360/608 (59%), Gaps = 11/608 (1%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105
            +  C       A+     M   GV  D+VT + ++  C+       A ++H + +  G 
Sbjct: 141 LSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGL 200

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           + E F+ N L++++ K  +LEEAQ +F  M  R++V+W ++IS          AL++   
Sbjct: 201 DKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQG 260

Query: 166 MLREGVRPNMFTY----SAVLRACDSLIILRQLHCGIIKVGFE-SDVFVRSALIDIYAKL 220
           M   GV P++ T     SA+ +  D     + LHC +++ G++  D+   +A++D+YAKL
Sbjct: 261 MRGSGVSPDVLTLVSLASAIAQGGDGRSA-KSLHCYVMRRGWDVDDIIAGNAIVDMYAKL 319

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSV 279
             +  A+ +F+ MP +D V WN++I G+ QN   +EA+  Y  M K  G  A Q T  SV
Sbjct: 320 SNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSV 379

Query: 280 LRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
           L A + L  L+ G ++H   +K   + D+ +   L+D+Y KCG L +AM +F +M ++  
Sbjct: 380 LPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRST 439

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
             W+ +ISGL  +G+  EAL LF  M+   IKP+++T V +L ACSHAG V+ G + F  
Sbjct: 440 GPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDV 499

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457
           M+  Y I P  +HY+CM D+LGRAG+L EA   I  MP +PD+  W ALLGAC++H N +
Sbjct: 500 MQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVE 559

Query: 458 LAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVN 517
           +   A++ +  LDP++ G Y+L+SN+YA   KWD V EVR  +R + + K PG S IEV 
Sbjct: 560 MGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVK 619

Query: 518 KQIHAFNVADSS--HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYH 575
           + ++ F   + +  HPQ ++I   L+ L+ K+  VGY  D ++VLQD+E ++KE  +  H
Sbjct: 620 RSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEHILNNH 679

Query: 576 SEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDG 635
           SE+LAI FG+++      + I KNLR+CGDCH   K  +++  + I++RD  R+HHF+DG
Sbjct: 680 SERLAIAFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSNRFHHFKDG 739

Query: 636 NCSCGDYW 643
           +CSCGD+W
Sbjct: 740 HCSCGDFW 747



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 142/427 (33%), Positives = 220/427 (51%), Gaps = 22/427 (5%)

Query: 39  SSSLLDDFTRFCYQRDLPRAMKAM--HAMQC-HGVRADSVTYAELIKCCLARHAVEEAKL 95
           +++L+  F+R      LPR    +  H + C +  R D  T+  LI+   A  +   A  
Sbjct: 36  NNTLIAAFSRAA----LPRLAFPLLRHILSCAYPFRPDGFTFPSLIR---AAPSNASAAQ 88

Query: 96  VHNHVLSGGF-EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK 154
           +H   L  G   P  F    L++ +++F  + EA  +FD+M ER+V +W  M+S  C   
Sbjct: 89  LHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNA 148

Query: 155 MNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRS 211
              +A+ L   M+ EGV  +  T S+VL  C  L   ++   +H   +K G + ++FV +
Sbjct: 149 RAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCN 208

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
           ALID+Y KLG L  A+CVF+ M  RDLV WNSII G  Q      AL +++ M+ +G + 
Sbjct: 209 ALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSP 268

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLKYD---HDLILNNALLDMYCKCGSLEDAMSV 328
           D  TL S+  A            +H +V++      D+I  NA++DMY K  ++E A  +
Sbjct: 269 DVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRM 328

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGF 387
           F  M  +D +SW+T+I+G  QNG + EA++ +  M K   +K    T V VL A SH G 
Sbjct: 329 FDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGA 388

Query: 388 VEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
           ++ G   H  S+K   G++      +C+IDL  + GKL EA+ L  +MP       W A+
Sbjct: 389 LQQGMRMHALSIK--IGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTG-PWNAI 445

Query: 447 LGACKVH 453
           +    VH
Sbjct: 446 ISGLGVH 452


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/628 (36%), Positives = 366/628 (58%), Gaps = 14/628 (2%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAEL 80
           F +     V S NTI    S   D    F   +++ R  K         VR + VT   +
Sbjct: 357 FDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEK---------VRVNEVTVLNV 407

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
           +  C   H +   K +H +    GF  +  + N  +  + K S L+ A+ +F  M  + V
Sbjct: 408 LPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTV 467

Query: 141 VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCG 197
            SW  +I A+       K+L+L + M+  G+ P+ FT  ++L AC  L  LR   ++H  
Sbjct: 468 SSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGF 527

Query: 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEA 257
           +++ G E D F+  +L+ +Y +   +   + +F++M  + LV WN +I GF+QN    EA
Sbjct: 528 MLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEA 587

Query: 258 LNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDM 315
           L+ +++M   G    +  +T VL AC+ ++ L LG +VH   LK     D  +  AL+DM
Sbjct: 588 LDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDM 647

Query: 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITI 375
           Y KCG +E + ++F R+ +KD   W+ +I+G   +G+  +A++LFE M+    +P+  T 
Sbjct: 648 YAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTF 707

Query: 376 VGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435
           +GVL AC+HAG V +G  +   M+  YG+ P  EHY+C++D+LGRAG+L EA+KL++EMP
Sbjct: 708 LGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMP 767

Query: 436 YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAE 495
            EPD+  W +LL +C+ + + ++    +KK+L L+P     Y+LLSN+YA   KWDEV +
Sbjct: 768 DEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRK 827

Query: 496 VRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPD 555
           VR+ M+  G+ K+ GCSWIE+   ++ F V+D S  +  KI +    L +K+  +GY PD
Sbjct: 828 VRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPD 887

Query: 556 TNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAK 615
           T+ VL +LE E K   ++ HSEKLAI FGL++  +G T+R+ KNLRIC DCH   KL +K
Sbjct: 888 TSCVLHELEEEGKIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSK 947

Query: 616 MENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +  + I++RD  R+HHF++G C+CGD+W
Sbjct: 948 VVKRDIIVRDNKRFHHFKNGLCTCGDFW 975



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 197/408 (48%), Gaps = 22/408 (5%)

Query: 11  WTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGV 70
           WT+  + +       T P +S  + T+  S +L      C   +L  A+  +H+   +G 
Sbjct: 25  WTRNHNNSNNLFPPFTVPKSSLTSHTKTHSPILQRLHNLCDSGNLNDALNLLHSHAQNGT 84

Query: 71  RADSVTYAE----LIKCCLARHAVEEAKLVHNHV-LSGGFEPETFLVNILLNMHVKFSLL 125
            + S    E    L++ C     +   + VH  V  S     +  L   ++ M+      
Sbjct: 85  VSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSP 144

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNMFTYSAVLRA 184
            +++ +FD   E+++  +  ++S Y    +   A+ L + +L    + P+ FT   V +A
Sbjct: 145 SDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKA 204

Query: 185 CDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C  +    +   +H   +K G  SD FV +ALI +Y K G + +A  VF  M  R+LV W
Sbjct: 205 CAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSW 264

Query: 242 NSIIGGFAQNSDVDEALNLYKRM---KRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           NS++   ++N    E   ++KR+   +  G   D +T+ +V+ AC  +  + +G  VH  
Sbjct: 265 NSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGL 324

Query: 299 VLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
             K     ++ +NN+L+DMY KCG L +A ++F     K+V+SW+T+I G ++ G  +  
Sbjct: 325 AFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGV 384

Query: 357 LKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
            +L + M +  +++ N +T++ VL ACS       G +   S+K+ +G
Sbjct: 385 FELLQEMQREEKVRVNEVTVLNVLPACS-------GEHQLLSLKEIHG 425


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/602 (38%), Positives = 349/602 (57%), Gaps = 33/602 (5%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           T +    D  +A++    M+  G+  +  T+  ++  C +  A      VH  ++  GF 
Sbjct: 213 TGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFG 272

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
              F+ + L++M+ K   L  A+ + + M   + VSW +MI       + ++AL L   M
Sbjct: 273 ANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIM 332

Query: 167 LREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
               ++ + FTY +VL     ++ +R    +H  I+K GFE+   V +AL+D+YAK G  
Sbjct: 333 HLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYF 392

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
             A  VF +M  +D++ W S++ G   N   +EAL L+  M+  G   DQ  + +VL AC
Sbjct: 393 DYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSAC 452

Query: 284 TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
             L +LE G QVH + LK      L ++N+L+ MY KCG +EDA  VF  M  +DVI+W+
Sbjct: 453 AELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWT 512

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
            +I G AQNG  ++                            HAG VE G ++F+SM++ 
Sbjct: 513 ALIVGYAQNGRGRD----------------------------HAGLVEHGRSYFQSMEEV 544

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
           YGI PG EHY+CMIDLLGR+GKL EA +L+++M  +PDA  W+ALL AC+VH N +L   
Sbjct: 545 YGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGER 604

Query: 462 AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIH 521
           AA  +  L+P++   Y+LLSN+Y+ + KW+E A+ R+ M+ RG++KEPGCSWIE++ ++H
Sbjct: 605 AANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVH 664

Query: 522 AFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAI 581
            F   D SHP+  +I   +  ++  +   GY PD N+ L D++ E KE  + YHSEKLA+
Sbjct: 665 RFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEKLAV 724

Query: 582 VFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641
            FGL+++  G  IRI KNLRICGDCHT  K  + + ++ +++RD   +HHF++G CSC D
Sbjct: 725 AFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSCSD 784

Query: 642 YW 643
           YW
Sbjct: 785 YW 786



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 195/372 (52%), Gaps = 20/372 (5%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N ++  +     L EA+ LF + P R+ ++W+++IS YC    + +ALEL   M  EG R
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 173 PNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           PN FT+ +VLR C   ++L   +Q+H   IK  F+S+ FV + L+D+YAK   +  AE +
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYL 195

Query: 230 FNEMP-TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           F   P  R+ V+W +++ G++QN D  +A+  ++ M+  G   +Q T  S+L AC  ++ 
Sbjct: 196 FELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISA 255

Query: 289 LELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
              G QVH  +++  +  ++ + +AL+DMY KCG L +A  +   M   D +SW++MI G
Sbjct: 256 CGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVG 315

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
             + G  +EAL LF  M +  +K +  T   VL   S   FV D  N          +  
Sbjct: 316 CVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFS---FVMDMRNAMSVHSLI--VKT 370

Query: 407 GREHY----SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT---DLA 459
           G E Y    + ++D+  + G    A  +  +M  + D ++W +L+  C VH  +    L 
Sbjct: 371 GFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMT-DKDVISWTSLVTGC-VHNGSYEEALR 428

Query: 460 ICAAKKILNLDP 471
           +    +I+ + P
Sbjct: 429 LFCEMRIMGIHP 440



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 3/146 (2%)

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           D D    N ++  Y   G L +A  +F     +  I+WS++ISG  + G   EAL+LF  
Sbjct: 69  DRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWE 128

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRA 421
           M+    +PN  T   VL  CS    +E G   H  ++K  +  D      + ++D+  + 
Sbjct: 129 MQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQF--DSNAFVVTGLVDMYAKC 186

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALL 447
             + EA  L    P + + V W A++
Sbjct: 187 KCILEAEYLFELAPDKRNHVLWTAMV 212


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/578 (38%), Positives = 345/578 (59%), Gaps = 6/578 (1%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           GV  D  T   ++  C     +   + +H   +   F  E    N LL+M+ K   L  A
Sbjct: 291 GVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGA 350

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC--- 185
             +F +M +  +VSWT++I+AY    +   A+ L   M  +GVRP+++T ++++ AC   
Sbjct: 351 TEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACS 410

Query: 186 DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
            SL   R +H  +IK G  S++ V +ALI++YAK G +  A  VF+++P +D+V WN++I
Sbjct: 411 SSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMI 470

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YD 303
           GG++QN   +EAL L+  M++  F  D  T+  VL AC GLA L+ G ++H H+L+  Y 
Sbjct: 471 GGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYF 529

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            DL +  AL+DMY KCG L  A  +F  + +KD+ISW+ MI+G   +G+  EA+  F  M
Sbjct: 530 SDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEM 589

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
           +++ I+P+  +   +L ACSH+G + +GW  F SM+   G++P  EHY+C++DLL R G 
Sbjct: 590 RIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGN 649

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L +A K I  MP +PD   W  LL  C++H +  LA   A+ I  L+P +   Y++L+N+
Sbjct: 650 LSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANV 709

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           YA ++KW+EV ++RK M+ RG  + PGCSWIEV  + + F   +S HPQ  KI+  L  L
Sbjct: 710 YAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKL 769

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
             ++    Y+    YVL + +  +KE     HSEK A+ FG+++L  G+T+R+ KN R+C
Sbjct: 770 TMQMQNEDYSSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNRRVC 829

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641
           GDCH   K  +K     IV+RD  R+HHF+DG CSC D
Sbjct: 830 GDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSCRD 867



 Score =  221 bits (564), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 149/446 (33%), Positives = 241/446 (54%), Gaps = 15/446 (3%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  GV  +  T+  ++KC  A   V+E K VH +VL  GF   T +VN L+  + KF  
Sbjct: 186 MQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGG 245

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +E A  LFD++ E +VVSW +MI+       +   LE+ I ML  GV  ++ T  +VL A
Sbjct: 246 VESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVA 305

Query: 185 C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C    +L + R LH   +K  F  +V   + L+D+Y+K G L  A  VF +M    +V W
Sbjct: 306 CANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSW 365

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            SII  + +     +A+ L+  M+  G   D  T+TS++ AC   + L+ G  VH +V+K
Sbjct: 366 TSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK 425

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
                +L + NAL++MY KCGS+E+A  VFS++  KD++SW+TMI G +QN    EAL+L
Sbjct: 426 NGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALEL 485

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSC-MIDL 417
           F  M+  + KP+ IT+  VL AC+    ++ G   H   +++ Y  D    H +C ++D+
Sbjct: 486 FLDMQ-KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL---HVACALVDM 541

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAK--KILNLDPQDPG 475
             + G L  A +L+ +M  + D ++W  ++    +H   + AI      +I  ++P D  
Sbjct: 542 YAKCGLLVLA-QLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEP-DES 599

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMR 501
           ++  + N  ++S   +E  +   +MR
Sbjct: 600 SFSAILNACSHSGLLNEGWKFFNSMR 625



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 233/435 (53%), Gaps = 15/435 (3%)

Query: 22  SLTITPPVA-SCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAEL 80
           ++ ++P    + +++T+N ++ ++   +FC   DL  A++ +   + + +  +S  Y  +
Sbjct: 46  TVCVSPSFTNTTHSVTQNQNAKIN---KFCEMGDLRNAIELLTKSKSYELGLNS--YCSV 100

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
           ++ C  + ++E+ K VH+ ++S G   +  L   L+ M+V    L + + +FD++    V
Sbjct: 101 LQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKV 160

Query: 141 VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCG 197
             W  ++S Y       +++ L   M + GV  N +T++ VL+   +L  +++   +H  
Sbjct: 161 FLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGY 220

Query: 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEA 257
           ++K+GF S+  V ++LI  Y K G + +A  +F+E+   D+V WNS+I G   N      
Sbjct: 221 VLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNG 280

Query: 258 LNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDM 315
           L ++ +M   G   D +TL SVL AC  +  L LG  +H   +K  +  +++ +N LLDM
Sbjct: 281 LEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDM 340

Query: 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITI 375
           Y KCG+L  A  VF +M    ++SW+++I+   + G   +A+ LF+ M+   ++P+  T+
Sbjct: 341 YSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTV 400

Query: 376 VGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
             ++ AC+ +  ++ G + H   +K   G+       + +I++  + G ++EA  +  ++
Sbjct: 401 TSIVHACACSSSLDKGRDVHSYVIKN--GMGSNLPVTNALINMYAKCGSVEEARLVFSKI 458

Query: 435 PYEPDAVTWRALLGA 449
           P + D V+W  ++G 
Sbjct: 459 PVK-DIVSWNTMIGG 472


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/627 (36%), Positives = 354/627 (56%), Gaps = 52/627 (8%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G R D +T   ++  C +       K  H   ++       F+ N L++M+ KF +++EA
Sbjct: 224 GFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEA 283

Query: 129 QVLFDQMPERNVVSWTTM-----------------------------------ISAYCDA 153
             +F  MP ++VVSW  M                                   IS Y   
Sbjct: 284 NTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQR 343

Query: 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKV-------GF 203
            +  +AL +   ML  G++PN  T  +VL  C S+  L   +++HC  IK        G 
Sbjct: 344 GLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGH 403

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPT--RDLVVWNSIIGGFAQNSDVDEALNLY 261
             +  V + LID+YAK  ++  A  +F+ +    RD+V W  +IGG++Q+ D ++AL L 
Sbjct: 404 GDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELL 463

Query: 262 KRM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD---LILNNALLDMY 316
             M  +      +  T++  L AC  LA L +G Q+H + L+   +   L ++N L+DMY
Sbjct: 464 SEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMY 523

Query: 317 CKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIV 376
            KCG + DA  VF  M++K+ ++W+++++G   +GY +EAL +FE M+    K + +T++
Sbjct: 524 AKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLL 583

Query: 377 GVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY 436
            VL+ACSH+G ++ G  +F  MK  +G+ PG EHY+C++DLLGRAG+L  A++LI EMP 
Sbjct: 584 VVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPM 643

Query: 437 EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEV 496
           EP  V W ALL  C++H   +L   AAKKI  L   + G+Y LLSN+YAN+ +W +V  +
Sbjct: 644 EPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRI 703

Query: 497 RKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDT 556
           R  MR +GI K PGCSW+E  K    F V D +HP   +I + L   +Q++  +GY P+T
Sbjct: 704 RSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPET 763

Query: 557 NYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKM 616
            + L D++ E+K+D +  HSEKLA+ +G+++  QG  IRI KNLR+CGDCHT     +++
Sbjct: 764 GFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRI 823

Query: 617 ENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +  I++RD  R+HHF++G CSC  YW
Sbjct: 824 IDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 207/434 (47%), Gaps = 55/434 (12%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D+ T+  + K C    +V      H      GF    F+ N L+ M+ +   L +A+ +F
Sbjct: 126 DNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVF 185

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNMFTYSAVLRACDSL--- 188
           D+MP  +VVSW ++I +Y        ALE+   M  E G RP+  T   VL  C S+   
Sbjct: 186 DEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTR 245

Query: 189 IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
            + +Q H   +      ++FV + L+D+YAK G +  A  VF+ MP +D+V WN+++ G+
Sbjct: 246 SLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGY 305

Query: 249 AQNSDVDEALNLYKRMKR-----------------------------------AGFAADQ 273
           +Q    ++A+ L+++M+                                    +G   ++
Sbjct: 306 SQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNE 365

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN---------NALLDMYCKCGSLED 324
            TL SVL  C  +  L  G ++H + +KY  DL  N         N L+DMY KC  ++ 
Sbjct: 366 VTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDI 425

Query: 325 AMSVFSRMI--QKDVISWSTMISGLAQNGYSQEALKLFESM--KVSRIKPNYITIVGVLF 380
           A ++F  +   ++DV++W+ MI G +Q+G + +AL+L   M  +  + +PN  TI   L 
Sbjct: 426 ARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALV 485

Query: 381 ACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD 439
           AC+    +  G   H  +++      P     +C+ID+  + G + +A +L+ +   E +
Sbjct: 486 ACASLAALSIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCGDIGDA-RLVFDNMMEKN 543

Query: 440 AVTWRALLGACKVH 453
            VTW +L+    +H
Sbjct: 544 EVTWTSLMTGYGMH 557



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 122/435 (28%), Positives = 204/435 (46%), Gaps = 55/435 (12%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP--ERNVVSWTTMI 147
           + + KL+H  +LS G      L + L++ ++    L  A  L  + P  +  V  W ++I
Sbjct: 41  ISQVKLIHQKLLSFGILTLN-LTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLI 99

Query: 148 SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFE 204
            +Y +    +K L     M      P+ +T+  V +AC  +  +R     H      GF 
Sbjct: 100 RSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFM 159

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
           S+VFV +AL+ +Y++ G L +A  VF+EMP  D+V WNSII  +A+      AL ++ +M
Sbjct: 160 SNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKM 219

Query: 265 KRA-GFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGS 321
               GF  D  TL +VL  C  +    LG Q H   +  +   ++ + N L+DMY K G 
Sbjct: 220 TNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGM 279

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK----------------- 364
           +++A +VFS M  KDV+SW+ M++G +Q G  ++A++LFE M+                 
Sbjct: 280 MDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISG 339

Query: 365 ------------------VSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGID 405
                              S IKPN +T++ VL  C+  G +  G   H  ++K  Y +D
Sbjct: 340 YAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIK--YPMD 397

Query: 406 PGREHY-------SCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLGACKVHRNTD 457
             +  +       + +ID+  +  K+  A  +   + P E D VTW  ++G    H + +
Sbjct: 398 LRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDAN 457

Query: 458 LAICAAKKILNLDPQ 472
            A+    ++   D Q
Sbjct: 458 KALELLSEMFEEDCQ 472



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 147/305 (48%), Gaps = 27/305 (8%)

Query: 171 VRPNMFTYSAV------LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           ++ ++F+ SA+      +  C ++  ++ +H  ++  G  + + + S LI  Y  LG L 
Sbjct: 18  LKVSLFSTSALEITPPFIHKCKTISQVKLIHQKLLSFGILT-LNLTSHLISTYISLGCLS 76

Query: 225 NAECVFNEMPTRDLVV--WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           +A  +    P  D  V  WNS+I  +  N   ++ L+ +  M    +  D  T   V +A
Sbjct: 77  HAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKA 136

Query: 283 CTGLALLELGTQVHV--HVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           C  ++ +  G   H    V  +  ++ + NAL+ MY +CGSL DA  VF  M   DV+SW
Sbjct: 137 CGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSW 196

Query: 341 STMISGLAQNGYSQEALKLFESMKVS-RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           +++I   A+ G  + AL++F  M      +P+ IT+V VL  C+  G    G       K
Sbjct: 197 NSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLG-------K 249

Query: 400 KFYGIDPGREHY------SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL-GACKV 452
           +F+G     E        +C++D+  + G + EA  +   MP + D V+W A++ G  ++
Sbjct: 250 QFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVK-DVVSWNAMVAGYSQI 308

Query: 453 HRNTD 457
            R  D
Sbjct: 309 GRFED 313


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/607 (38%), Positives = 357/607 (58%), Gaps = 38/607 (6%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+  +S T+  L K C    A +E K +H  +L  G   +  +   L++M+ +  ++E+A
Sbjct: 73  GLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDA 132

Query: 129 -------------------------------QVLFDQMPERNVVSWTTMISAYCDAKMND 157
                                          Q +FD++P ++VVSW  MIS Y +     
Sbjct: 133 HKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYK 192

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALI 214
           +ALEL   M++  V+P+  T + VL  C    ++ + RQ+H  I   GF S++ + +ALI
Sbjct: 193 EALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALI 252

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           D+Y+K GE+  A  +F  +  +D++ WN++IGG+A  +   EAL +++ M + G   +  
Sbjct: 253 DLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDV 312

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNAL----LDMYCKCGSLEDAMSVFS 330
           T+ S+L AC  L  +++G  +HV++ K    +I N +L    +DMY KCG++E A  VF 
Sbjct: 313 TMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFD 372

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            ++ K + S + MI G A +G +  A  L   MK   I+P+ IT VG+L ACSHAG  + 
Sbjct: 373 TILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDL 432

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G   FKSM   Y I+P  EHY CMIDLLGR+G  +EA +LI+ M  EPD V W +LL AC
Sbjct: 433 GRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKAC 492

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
           K+H+N +L    A+K++ ++P++PG+Y+LLSNIYA S +WD+VA VR  +  +G+ K PG
Sbjct: 493 KIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPG 552

Query: 511 CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKED 570
           CS IE++  +H F + D  HPQ  +I K L+ +   L   G+  DT+ VLQ++E E KE 
Sbjct: 553 CSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEELKEG 612

Query: 571 SIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYH 630
           ++ YHSEKLAI FGL+S   G  +RI KNLR+C +CH   KL +K+  + I+ RD  R+H
Sbjct: 613 ALSYHSEKLAIAFGLISTKPGTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRSRFH 672

Query: 631 HFQDGNC 637
           HF+DG C
Sbjct: 673 HFKDGMC 679



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/399 (29%), Positives = 194/399 (48%), Gaps = 40/399 (10%)

Query: 122 FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
           F  L  A  +F  + E N +SW TMI  +  +     AL L ++M+  G+ PN +T+  +
Sbjct: 25  FHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFL 84

Query: 182 LRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAK------------------- 219
            ++C         +Q+H  I+K G   D+ V ++LI +YA+                   
Sbjct: 85  FKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDV 144

Query: 220 ------------LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
                        G +  A+ +F+E+P +D+V WN++I G+A+     EAL L+  M + 
Sbjct: 145 VSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKM 204

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDA 325
               D+ST+ +VL  CT    +ELG Q+H  +    +  +L L NAL+D+Y KCG +E A
Sbjct: 205 DVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERA 264

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F  +  KDVISW+T+I G A   + +EAL +F+ M      PN +T++ +L AC+H 
Sbjct: 265 HGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHL 324

Query: 386 GFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           G ++ G W H    KK  GI       + +ID+  + G + EA   + +        +  
Sbjct: 325 GAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNI-EAANQVFDTILNKSLSSCN 383

Query: 445 ALLGACKVHRNTDLA--ICAAKKILNLDPQDPGTYILLS 481
           A++    +H   D A  + +  K   ++P D     LLS
Sbjct: 384 AMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLS 422



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 148/319 (46%), Gaps = 39/319 (12%)

Query: 199 IKVGFESDVFVRSALID---IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
           IK+G  +  +  S L+D   +      L  A  VF  +   + + WN++I G A +SD  
Sbjct: 1   IKIGLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPI 60

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALL 313
            ALNLY  M   G + +  T   + ++C      + G Q+H  +LKY    DL ++ +L+
Sbjct: 61  SALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLI 120

Query: 314 DMYCKCGSLEDAMSVF-----------SRMIQ--------------------KDVISWST 342
            MY + G +EDA  VF           + MI                     KDV+SW+ 
Sbjct: 121 SMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNA 180

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           MISG A+ G  +EAL+LF  M    +KP+  T+  VL  C+H+G VE G     S    +
Sbjct: 181 MISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELG-RQIHSWIDNH 239

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           G     +  + +IDL  + G+++ A  L   + Y+ D ++W  L+G      +   A+  
Sbjct: 240 GFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYK-DVISWNTLIGGYAYINHHKEALLV 298

Query: 463 AKKILNLDPQDPGTYILLS 481
            +++L L  + P    +LS
Sbjct: 299 FQEMLKLG-ETPNDVTMLS 316



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 110/243 (45%), Gaps = 22/243 (9%)

Query: 294 QVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           ++ +H   Y    +L+  +L  Y     L  A+SVF  + + + +SW+TMI G A +   
Sbjct: 2   KIGLHNTNYALSKLLDFCILTPYFH--GLPYAISVFKSIQEPNQLSWNTMIRGHALSSDP 59

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYS 412
             AL L+  M    + PN  T   +  +C+ +   ++G   H + +K  YG+      ++
Sbjct: 60  ISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILK--YGLTVDLHVHT 117

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP- 471
            +I +  + G +++A K+     +  D V++ A++       N D     A+K+ +  P 
Sbjct: 118 SLISMYAQNGIVEDAHKVFDTSSHR-DVVSYTAMITGYASRGNMD----KAQKMFDEIPI 172

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG--------CSW---IEVNKQI 520
           +D  ++  + + YA   ++ E  E+   M    +  +          C+    +E+ +QI
Sbjct: 173 KDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQI 232

Query: 521 HAF 523
           H++
Sbjct: 233 HSW 235


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/570 (40%), Positives = 340/570 (59%), Gaps = 34/570 (5%)

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
           P    ++ L   +     L+ +  LF +    +V  WT +I  +    ++++AL     M
Sbjct: 7   PAXVPLDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQM 66

Query: 167 LREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           L +GV PN FT+S++L+ C  +   + LH   +K+GF+SD++VR+ L+D+YA+ G++ +A
Sbjct: 67  LTQGVEPNAFTFSSILKLC-PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSA 125

Query: 227 ECVFNEMPT-------------------------------RDLVVWNSIIGGFAQNSDVD 255
           + +F+ MP                                RD V WN +I G+ QN   +
Sbjct: 126 QQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPN 185

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
           EAL L++RM +A    ++ T+ SVL AC  L  LE G  VH ++       ++ +  AL+
Sbjct: 186 EALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALV 245

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           DMY KCGSLEDA  VF ++  KDV++W++MI G A  G+SQEAL+LF+SM    + P  I
Sbjct: 246 DMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNI 305

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
           T +G+L AC H+G+V +GW+ F  MK  YGI+P  EHY CM++LLGRAG +++A +L+  
Sbjct: 306 TFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKN 365

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
           M  EPD V W  LLGAC++H    L     + +++ +  + GTYILLSNIYA    WD V
Sbjct: 366 MNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGV 425

Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYA 553
           A +R  M+  G+ KEPGCS IEVN ++H F     +HP+  +I   L+ +   L   GY 
Sbjct: 426 ARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYT 485

Query: 554 PDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLT 613
           P T+ VL D+   +KE S++ HSEKLAI FGL++   G TI+I KNLR+C DCH   KL 
Sbjct: 486 PQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLI 545

Query: 614 AKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +K+  + IV+RD  R+HHF +G+CSCGDYW
Sbjct: 546 SKITGRKIVVRDRNRFHHFVNGSCSCGDYW 575



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 177/394 (44%), Gaps = 52/394 (13%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+     M   GV  ++ T++ ++K C     +E  K +H+  +  GF+ + ++   LL
Sbjct: 58  QALNFYAQMLTQGVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLL 113

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVS-------------------------------WTT 145
           +++ +   +  AQ LFD MPE+++VS                               W  
Sbjct: 114 DVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNV 173

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVG 202
           MI  Y    M ++AL L   ML+   +PN  T  +VL AC  L  L   R +H  I   G
Sbjct: 174 MIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNG 233

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
            + +V V +AL+D+Y+K G L +A  VF+++  +D+V WNS+I G+A      EAL L+K
Sbjct: 234 IQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFK 293

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCK 318
            M R G      T   +L AC     +  G  +  + +K ++ +         ++++  +
Sbjct: 294 SMCRMGLHPTNITFIGILSACGHSGWVTEGWDI-FNKMKDEYGIEPKIEHYGCMVNLLGR 352

Query: 319 CGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI--KPNYITI 375
            G +E A  +   M I+ D + W T++     +G      K+ E +    +     YI +
Sbjct: 353 AGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILL 412

Query: 376 VGVLFACSHAGFVEDGWNHFKSMKKFYGI--DPG 407
             +  A  +     DG    ++M K  G+  +PG
Sbjct: 413 SNIYAAVGNW----DGVARLRTMMKDSGVKKEPG 442



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 30/221 (13%)

Query: 42  LLDDFTRFCYQRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHV 100
           ++D +T    Q  +P  A+     M     + + VT   ++  C    A+E  + VH+++
Sbjct: 174 MIDGYT----QNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYI 229

Query: 101 LSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKAL 160
            + G +    +   L++M+ K   LE+A+++FD++ +++VV+W +MI  Y     + +AL
Sbjct: 230 ENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEAL 289

Query: 161 ELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVR---------- 210
           +L   M R G+ P   T+  +L AC         H G +  G+  D+F +          
Sbjct: 290 QLFKSMCRMGLHPTNITFIGILSACG--------HSGWVTEGW--DIFNKMKDEYGIEPK 339

Query: 211 ----SALIDIYAKLGELRNA-ECVFNEMPTRDLVVWNSIIG 246
                 ++++  + G +  A E V N     D V+W +++G
Sbjct: 340 IEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLG 380


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/584 (38%), Positives = 352/584 (60%), Gaps = 19/584 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL---L 125
           G   D  T + +I  C    +V     +H+  L  G   +  +   L++M+ K ++   +
Sbjct: 249 GFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAM 308

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMND-KALELLIFMLREGVRPNMFTYSAVLRA 184
           + A  +F++MP+ +V+SWT +IS Y  + + + K + L   ML E ++PN  TYS++L++
Sbjct: 309 DYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKS 368

Query: 185 CDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C S+      RQ+H  +IK    S   V +AL+ +YA+ G +  A  VFN++  R     
Sbjct: 369 CASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYER----- 423

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            S+I    +  D      L  R+ R       ST  S++ A   + +L  G Q+H   LK
Sbjct: 424 -SMIPCITEGRD----FPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLK 478

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
             +  D  ++N+L+ MY +CG LEDA   F+ +  ++VISW++MISGLA++GY++ AL L
Sbjct: 479 AGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSL 538

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F  M ++ +KPN +T + VL ACSH G V +G  +F+SM++ +G+ P  EHY+CM+DLL 
Sbjct: 539 FHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLA 598

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           R+G ++EA++ I+EMP + DA+ W+ LLGAC+ H N ++    AK ++ L+P+DP  Y+L
Sbjct: 599 RSGIVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVL 658

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LSN+YA++  WDEVA +R  MR   + KE G SW+EV    H F   D+SHP+   I   
Sbjct: 659 LSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGK 718

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
           L  L++++ G+GY PDT+ VL D+  E KE  +  HSEK+A+ FGL++ +  K IRI KN
Sbjct: 719 LDTLVRQIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKN 778

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           LR+C DCH+  K  +K   + I++RD  R+H  +DG CSCG+YW
Sbjct: 779 LRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 162/308 (52%), Gaps = 21/308 (6%)

Query: 93  AKLVHNHVLSGGF-EPETFLVNILLNMHVKFSLLEEAQVLFDQMPE-RNVVSWTTMISAY 150
            + +H  +L G   + +  + N LL ++ +   +  A+ +FD M   R++VSWT M S  
Sbjct: 67  GRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCL 126

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGII--------KVG 202
                   +L L+  ML  G+ PN +T  A   AC       +L+C +         K+G
Sbjct: 127 ARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHAC----FPHELYCLVGGVVLGLVHKMG 182

Query: 203 -FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLY 261
            + +DV V SALID+ A+ G+L +A  VF+ +  + +VVW  +I  + Q    +EA+ L+
Sbjct: 183 LWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELF 242

Query: 262 KRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKC 319
                 GF  D+ T++S++ ACT L  + LG Q+H   L+     D  ++  L+DMY K 
Sbjct: 243 LDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKS 302

Query: 320 G---SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ-EALKLFESMKVSRIKPNYITI 375
               +++ A  VF RM + DVISW+ +ISG  Q+G  + + + LF  M    IKPN+IT 
Sbjct: 303 NIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITY 362

Query: 376 VGVLFACS 383
             +L +C+
Sbjct: 363 SSILKSCA 370



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 155/296 (52%), Gaps = 19/296 (6%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           + M     M    ++ + +TY+ ++K C +    +  + VH HV+         + N L+
Sbjct: 342 KVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALV 401

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ +   +EEA+ +F+Q+ ER+++         C  +  D  L+  I  +  G+  +  
Sbjct: 402 SMYAESGCMEEARRVFNQLYERSMIP--------CITEGRDFPLDHRIVRMDVGISSS-- 451

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T+++++ A  S+ +L   +QLH   +K GF SD FV ++L+ +Y++ G L +A   FNE+
Sbjct: 452 TFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNEL 511

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             R+++ W S+I G A++   + AL+L+  M   G   +  T  +VL AC+ + L+  G 
Sbjct: 512 KDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGK 571

Query: 294 QVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMI 344
           + +   ++ DH LI        ++D+  + G +++A+   + M ++ D + W T++
Sbjct: 572 E-YFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLL 626



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 128/267 (47%), Gaps = 15/267 (5%)

Query: 192 RQLHCGIIKVGF-ESDVFVRSALIDIYAKLGELRNAECVFNEM-PTRDLVVWNSIIGGFA 249
           R LH  +++    + D  V ++L+ +Y++ G + +A  VF+ M   RD+V W ++    A
Sbjct: 68  RALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLA 127

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL---LELGTQVHVHVLK-YDHD 305
           +N     +L L   M  +G   +  TL +   AC    L   +       VH +  +  D
Sbjct: 128 RNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTD 187

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           + + +AL+DM  + G L  A  VF  +I+K V+ W+ +IS   Q   ++EA++LF     
Sbjct: 188 VAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLE 247

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSC-MIDLLGRAG- 422
              +P+  T+  ++ AC+  G V  G   H  +++     D      SC ++D+  ++  
Sbjct: 248 DGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDAC---VSCGLVDMYAKSNI 304

Query: 423 --KLQEAVKLIHEMPYEPDAVTWRALL 447
              +  A K+   MP + D ++W AL+
Sbjct: 305 GQAMDYANKVFERMP-KNDVISWTALI 330


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/571 (39%), Positives = 343/571 (60%), Gaps = 40/571 (7%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GV 171
           N L++++++    E A   F++MP+R++VSW +MIS Y     N +AL +   ML E  +
Sbjct: 212 NALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSL 271

Query: 172 RPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK--------- 219
           +P+ FT +++L AC   + L I +Q+H  I++   E+   V +ALI +YAK         
Sbjct: 272 KPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARL 331

Query: 220 ------------------------LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
                                   LG ++ A  +FN++  RD+V W ++I G+ QN   +
Sbjct: 332 IVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWN 391

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNALL 313
           +AL L++ M   G   +  TL ++L   + L +LE G Q+H   +K        + NAL+
Sbjct: 392 DALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALI 451

Query: 314 DMYCKCGSLEDAMSVFS-RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
            MY K G++  A  VF     +K+++SW++MI  LAQ+G  +EA+ LFE M    +KP++
Sbjct: 452 AMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDH 511

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           IT VGVL AC+H G VE G  ++  M + + I+P   HY+CMIDL GRAG LQEA   I 
Sbjct: 512 ITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIE 571

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
            MP EPD + W +LL +CK+H+N DLA  AA+++L +DP + G Y+ L+N+Y+   KW+ 
Sbjct: 572 SMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWEN 631

Query: 493 VAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGY 552
            A+ RK M+ RG+ KE G SWI +  ++HAF V D  HPQ D+I K +  + +++  +G+
Sbjct: 632 AAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGF 691

Query: 553 APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
            PDT  VL DLE E KE  ++YHSEKLAI FGL++  +   +RI KNLR+C DCH+  K 
Sbjct: 692 IPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSAIKF 751

Query: 613 TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +K+  + I++RD  R+HHF+DG+CSC DYW
Sbjct: 752 ISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 201/446 (45%), Gaps = 104/446 (23%)

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
           TF  N L++ + K    E ++ L  +MP+ + VSWT +I  Y    + D A+ +   M+ 
Sbjct: 76  TFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMIS 135

Query: 169 EGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           E V P+ FT S VL +C    +L I R++H  ++K+G  S V V ++L+++YAK G+   
Sbjct: 136 ERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVI 195

Query: 226 AECVFN-------------------------------EMPTRDLVVWNSIIGGFAQNSDV 254
           A+ VF+                               +MP RD+V WNS+I G++Q    
Sbjct: 196 AKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYN 255

Query: 255 DEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD-------- 305
            EAL ++ +M        D  TL S+L AC  L  L +G Q+H ++L+ + +        
Sbjct: 256 LEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNA 315

Query: 306 ---------------------------LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
                                      +I   +LLD Y K G+++ A  +F+++  +DV+
Sbjct: 316 LISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVV 375

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS-----------HAGF 387
           +W+ MI G  QNG   +AL+LF  M     +PN  T+  +L   S           HA  
Sbjct: 376 AWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASA 435

Query: 388 VEDGWNHFKSM-----------------KKFYGIDPGREH---YSCMIDLLGRAGKLQEA 427
           ++ G +   S+                 K+ + +  G++    ++ MI  L + G  +EA
Sbjct: 436 IKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEA 495

Query: 428 VKLIHEM---PYEPDAVTWRALLGAC 450
           + L   M     +PD +T+  +L AC
Sbjct: 496 INLFERMLSVGMKPDHITYVGVLSAC 521



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 117/258 (45%), Gaps = 65/258 (25%)

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           R +HC IIK G    V++ + L+  YAK G LR A  VF+EMP +    WN++I G+A+ 
Sbjct: 30  RSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQ 89

Query: 252 SD-------------------------------VDEALNLYKRMKRAGFAADQSTLTSVL 280
            +                                D A+ ++ +M        Q T+++VL
Sbjct: 90  GNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVL 149

Query: 281 RACTGLALLELGTQVHVHVLK-----------------------------YDHDLILN-- 309
            +C     L++G ++H  V+K                             +D   + N  
Sbjct: 150 SSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNIS 209

Query: 310 --NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM-KVS 366
             NAL+ +Y + G  E A S F +M  +D++SW++MISG +Q GY+ EAL +F  M    
Sbjct: 210 TWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEP 269

Query: 367 RIKPNYITIVGVLFACSH 384
            +KP+  T+  +L AC++
Sbjct: 270 SLKPDNFTLASILSACAN 287



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 95/257 (36%), Gaps = 64/257 (24%)

Query: 292 GTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G  VH  ++K    L   L N L+  Y K GSL  A  VF  M  K   SW+T+ISG A+
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 350 N--------------------------GYSQ-----EALKLFESMKVSRIKPNYITIVGV 378
                                      GY+Q      A+ +F  M   R+ P+  T+  V
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 379 LFACS-----------HAGFVEDGWNH----FKSMKKFYGI--DP-------------GR 408
           L +C+           H+  V+ G         S+   Y    DP               
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
             ++ +I L  ++G+ + A     +MP + D V+W +++           A+    K+LN
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMP-DRDIVSWNSMISGYSQQGYNLEALVIFSKMLN 267

Query: 469 LDPQDPGTYILLSNIYA 485
                P  + L S + A
Sbjct: 268 EPSLKPDNFTLASILSA 284


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/553 (39%), Positives = 341/553 (61%), Gaps = 6/553 (1%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
            Y   I  C     +++A+ +H H+ S  F  + FL N L++++ K   + EA  +FD+M
Sbjct: 53  VYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKM 112

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILR 192
             +++VSWT++I+ Y    M  +A+ LL  ML+   +PN FT++++L+A  +     I  
Sbjct: 113 RNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGG 172

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           Q+H   +K  +  DV+V SAL+D+YA+ G++  A  VF+++ +++ V WN++I GFA+  
Sbjct: 173 QIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKG 232

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNN 310
           D + AL ++  M+R GF A   T +S+  A  G+  LE G  VH H++K    L   + N
Sbjct: 233 DGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGN 292

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
            +LDMY K GS+ DA  VF R++ KD+++W++M++  AQ G  +EA+  FE M+ S I  
Sbjct: 293 TMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYL 352

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           N I+ + +L ACSH G V++G  H+  M K Y ++P  EHY  ++DLLGRAG L  A+  
Sbjct: 353 NQISFLCILTACSHGGLVKEG-KHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVF 411

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
           I +MP EP A  W ALL AC++H+N  +   AA  +  LDP D G  +LL NIYA++  W
Sbjct: 412 IFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHW 471

Query: 491 DEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGV 550
           D  A VRK M+A G+ KEP CSW+E+   +H F   D +HP+ ++I K    +  K+   
Sbjct: 472 DAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRAEEIYKMWDEISMKIRKE 531

Query: 551 GYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFA 610
           GY PD +YVL  ++ +++E ++QYHSEK+A+ F L+ +  G TIRI KN+RICGDCH+  
Sbjct: 532 GYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAF 591

Query: 611 KLTAKMENQTIVI 623
           K  +K+  + IVI
Sbjct: 592 KYISKVFEREIVI 604



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 113/255 (44%), Gaps = 35/255 (13%)

Query: 31  SCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAV 90
           S N ++ N+  L+  F R   + D   A+     MQ +G  A   TY+ +        A+
Sbjct: 215 SKNGVSWNA--LISGFAR---KGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGAL 269

Query: 91  EEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
           E+ K VH H++    +   F+ N +L+M+ K   + +A+ +F+++  +++V+W +M++A+
Sbjct: 270 EQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAF 329

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVG-------- 202
               +  +A+     M + G+  N  ++  +L AC         H G++K G        
Sbjct: 330 AQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACS--------HGGLVKEGKHYFDMIK 381

Query: 203 ---FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL-VVWNSIIGGFAQNSDVDEAL 258
               E ++     ++D+  + G L  A     +MP      VW +++           A 
Sbjct: 382 EYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLA----------AC 431

Query: 259 NLYKRMKRAGFAADQ 273
            ++K  K   FAAD 
Sbjct: 432 RMHKNAKVGQFAADH 446


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/527 (43%), Positives = 324/527 (61%), Gaps = 8/527 (1%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE---GVRPNMFTYSAV 181
           L  A+ LFD+MP R+  SW+ ++SA+        AL +   MLRE       N FT S+ 
Sbjct: 109 LASARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSA 168

Query: 182 LRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
           L A  +       R+LHC +++ G ++D  V SAL D+YAK G L +A  VF+ MP RD+
Sbjct: 169 LAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDV 228

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           V W +++  +       E   L+ RM R+G   ++ T   VLRAC      +LG QVH  
Sbjct: 229 VSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGR 288

Query: 299 VLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           + K          +AL+ MY K G +  AM VF  M + D++SW+ MISG AQNG   EA
Sbjct: 289 MAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEA 348

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           L  F+ +  S  +P+++T VGVL AC+HAG V+ G   F S+K  YGI+   +HY+C+ID
Sbjct: 349 LHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVID 408

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476
           LL R+G  + A  +I+ MP +P+   W +LLG C++H+N  LA  AA+ +  ++P++P T
Sbjct: 409 LLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPAT 468

Query: 477 YILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKI 536
           Y+ L+NIYA+   +DEV  +R+TM  RGITK P  SWIEV  ++H F V D SHPQ ++I
Sbjct: 469 YVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAEEI 528

Query: 537 NKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRI 596
              LK L  K+   GY  DT +VL D+E EQK+  I YHSE+LA+ FG+++  +G  I++
Sbjct: 529 YALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGSPIKV 588

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KNLRICGDCHT  KL +K+  + I++RD  R+HHF++G+CSC DYW
Sbjct: 589 FKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 141/259 (54%), Gaps = 9/259 (3%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H HV+  G + +  + + L +M+ KF  L++A+ +FD+MP R+VVSWT M+  Y DA  
Sbjct: 184 LHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGR 243

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSA 212
           + +   L + M+R G+ PN FTY+ VLRAC       + +Q+H  + K       F  SA
Sbjct: 244 DGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSA 303

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           L+ +Y+K G++  A  VF  MP  DLV W ++I G+AQN   DEAL+ +  +  +GF  D
Sbjct: 304 LVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPD 363

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK----YDHDLILNNALLDMYCKCGSLEDAMSV 328
             T   VL AC    L++ G  +  H +K     +H       ++D+  + G  E A  +
Sbjct: 364 HVTFVGVLSACAHAGLVDKGLGI-FHSIKDKYGIEHTADHYACVIDLLSRSGLFERAEDM 422

Query: 329 FSRM-IQKDVISWSTMISG 346
            + M ++ +   W++++ G
Sbjct: 423 INTMPVKPNKFLWASLLGG 441


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/567 (40%), Positives = 353/567 (62%), Gaps = 10/567 (1%)

Query: 86  ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTT 145
           +RH + +   +H  ++  G   + F+V  LL    K   ++ A  +F      NV  +T 
Sbjct: 49  SRH-INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTA 107

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVG 202
           +I  +  +    +A++L   ML E + P+ +  +++L+AC S + L   R++H   +K+G
Sbjct: 108 LIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLG 167

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMP----TRDLVVWNSIIGGFAQNSDVDEAL 258
           F S+  VR  ++++Y K GEL +A  VF EMP     +D V W ++I GF +N + + AL
Sbjct: 168 FSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRAL 227

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMY 316
             ++ M+      ++ T+  VL AC+ L  LE+G  VH ++ K+  + +L + NAL++MY
Sbjct: 228 EAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMY 287

Query: 317 CKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIV 376
            +CGS+++A +VF  M  +DVI+++TMISGL+ NG S++A++LF  M   R++P  +T V
Sbjct: 288 SRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFV 347

Query: 377 GVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY 436
           GVL ACSH G V+ G+  F SM + Y ++P  EHY CM+DLLGR G+L+EA  LI  M  
Sbjct: 348 GVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKM 407

Query: 437 EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEV 496
            PD +    LL ACK+H+N +L    AK++ +    D GTY+LLS++YA+S KW E A+V
Sbjct: 408 TPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQV 467

Query: 497 RKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDT 556
           R  M+  G+ KEPGCS IEVN +IH F + D  HPQ ++I + L+ L + L   GY P+ 
Sbjct: 468 RAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEK 527

Query: 557 NYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKM 616
             VLQD+E  +KE ++  HSE+LAI +GL+S      IR+ KNLR+C DCH+  KL AK+
Sbjct: 528 EVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKI 587

Query: 617 ENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             + IV+RD  R+H+F++G CSCGDYW
Sbjct: 588 TRRKIVVRDRNRFHYFENGACSCGDYW 614



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 175/369 (47%), Gaps = 40/369 (10%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D+   A ++K C ++ A+ E + VH+  L  GF     +   ++ ++ K   L +A+ +F
Sbjct: 136 DNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVF 195

Query: 133 DQMPE----RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           ++MPE    ++ V WT MI  +   +  ++ALE    M  E VRPN FT   VL AC  L
Sbjct: 196 EEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQL 255

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             L   R +H  + K   E ++FV +ALI++Y++ G +  A+ VF+EM  RD++ +N++I
Sbjct: 256 GALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMI 315

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD 305
            G + N    +A+ L++ M          T   VL AC+   L++ G ++  H +  D+ 
Sbjct: 316 SGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEI-FHSMARDY- 373

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
                                      ++  +  +  M+  L + G  +EA  L  +MK+
Sbjct: 374 --------------------------RVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKM 407

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
           +   P++I +  +L AC     +E G    K ++     D G   Y  +  +   +GK +
Sbjct: 408 T---PDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGT--YVLLSHVYASSGKWK 462

Query: 426 EAVKLIHEM 434
           EA ++  +M
Sbjct: 463 EAAQVRAKM 471



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 119/262 (45%), Gaps = 45/262 (17%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++D F R     +  RA++A   MQ   VR +  T   ++  C    A+E  + VH++
Sbjct: 211 TAMIDGFVR---NEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSY 267

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           +     E   F+ N L+NM+ +   ++EAQ +FD+M +R+V+++ TMIS       + +A
Sbjct: 268 MRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQA 327

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
           +EL   M+   +RP   T+  VL AC         H G++  GFE               
Sbjct: 328 IELFRVMVGRRLRPTNVTFVGVLNACS--------HGGLVDFGFE--------------- 364

Query: 220 LGELRNAECVFNEMPTRDLVV------WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
                    +F+ M  RD  V      +  ++    +   ++EA +L + MK      D 
Sbjct: 365 ---------IFHSM-ARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMK---MTPDH 411

Query: 274 STLTSVLRACTGLALLELGTQV 295
             L ++L AC     LELG QV
Sbjct: 412 IMLGTLLSACKMHKNLELGEQV 433


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/593 (37%), Positives = 343/593 (57%), Gaps = 6/593 (1%)

Query: 57   RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
             A+     MQ   ++ + VT   ++  C     ++  K +H   +    + +      L+
Sbjct: 413  EALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALV 472

Query: 117  NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
            +M+ K      A   F++M  R++V+W ++I+ Y        A+++   +    + P+  
Sbjct: 473  SMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAG 532

Query: 177  TYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
            T   V+ AC  L  L Q   +H  I+K+GFESD  V++ALID+YAK G L +AE +FN+ 
Sbjct: 533  TMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKT 592

Query: 234  P-TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
              T+D V WN II  + QN    EA++ + +M+   F  +  T  SVL A   LA    G
Sbjct: 593  DFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREG 652

Query: 293  TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
               H  +++  +  + ++ N+L+DMY KCG L  +  +F+ M  KD +SW+ M+SG A +
Sbjct: 653  MAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVH 712

Query: 351  GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
            G+   A+ LF  M+ S+++ + ++ V VL AC H G VE+G   F SM   Y I P  EH
Sbjct: 713  GHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEH 772

Query: 411  YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
            Y+CM+DLLGRAG   E +  I  MP EPDA  W ALLG+C++H N  L   A   ++ L+
Sbjct: 773  YACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLE 832

Query: 471  PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSH 530
            P++P  +++LS+IYA S +W +  + R  M   G+ K PGCSW+E+  ++HAF V D SH
Sbjct: 833  PRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSH 892

Query: 531  PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
            PQ++ ++     L++K+  +GY PD + VLQ++E E KE  +  HSE+LAI F L++   
Sbjct: 893  PQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPP 952

Query: 591  GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            G TI+I KNLR+C DCHT  K  +K+  + I++RD  R+HHF+DG CSC DYW
Sbjct: 953  GSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 211/392 (53%), Gaps = 39/392 (9%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  ++  GF+    + + L+N++  F   + A+ +FD  P  + + W +MI AY  +K 
Sbjct: 51  IHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQ 109

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSA 212
            ++ALE+   M+ +G+ P+ +T++ VL+AC   + L++    H  I + G E DVF+ + 
Sbjct: 110 YNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAG 169

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           L+D+Y+K+G+L+ A  VF++MP RD+V WN++I G +Q+ D  EA++ ++ M+  G    
Sbjct: 170 LVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPS 229

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
             +L ++      L+ +EL   +H +V + D    ++N L+D+Y KCG ++ A  VF +M
Sbjct: 230 SVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQM 289

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG- 391
           + +D +SW TM++G A NG   E L+LF+ MK+  ++ N ++ V    A +    +E G 
Sbjct: 290 VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGK 349

Query: 392 ----------------------------WNHFKSMKKFYGIDPGRE--HYSCMIDLLGRA 421
                                           K+ + F+G+  GR+   +S +I  L + 
Sbjct: 350 EIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQ-GRDLVAWSAIIAALVQT 408

Query: 422 GKLQEAVKLIHEM---PYEPDAVTWRALLGAC 450
           G  +EA+ L  EM     +P+ VT  ++L AC
Sbjct: 409 GYPEEALSLFQEMQNQKMKPNRVTLMSILPAC 440



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 122/402 (30%), Positives = 211/402 (52%), Gaps = 8/402 (1%)

Query: 53  RDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
            D   A+    +MQ  GV   SV+   L         +E  + +H +V    F   + + 
Sbjct: 209 EDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFS--SAVS 266

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N L++++ K   ++ A+ +FDQM +++ VSW TM++ Y       + LEL   M    VR
Sbjct: 267 NGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVR 326

Query: 173 PNMFT-YSAVLRACDSLIILR--QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
            N  +  SA L A +++ + +  ++H   ++   +SD+ V + L+ +YAK GE   A+ +
Sbjct: 327 INKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQL 386

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F  +  RDLV W++II    Q    +EAL+L++ M+      ++ TL S+L AC  L+LL
Sbjct: 387 FWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLL 446

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
           +LG  +H   +K   D DL    AL+ MY KCG    A++ F+RM  +D+++W+++I+G 
Sbjct: 447 KLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGY 506

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
           AQ G    A+ +F  +++S I P+  T+VGV+ AC+    ++ G      + K  G +  
Sbjct: 507 AQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKL-GFESD 565

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
               + +ID+  + G L  A  L ++  +  D VTW  ++ A
Sbjct: 566 CHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 210/418 (50%), Gaps = 18/418 (4%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           +S++  +TR    +    A++  + M   G+  D  T+  ++K C     ++E    H  
Sbjct: 98  NSMIRAYTR---SKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGE 154

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           +   G E + F+   L++M+ K   L+ A+ +FD+MP+R+VV+W  MI+    ++   +A
Sbjct: 155 IDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEA 214

Query: 160 LELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDI 216
           ++    M   GV P+  +   +        ++ + R +H  + +  F S   V + LID+
Sbjct: 215 VDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSA--VSNGLIDL 272

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           Y+K G++  A  VF++M  +D V W +++ G+A N    E L L+ +MK      ++ + 
Sbjct: 273 YSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSA 332

Query: 277 TSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
            S   A      LE G ++H   L  + D D+++   L+ MY KCG  E A  +F  +  
Sbjct: 333 VSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQG 392

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
           +D+++WS +I+ L Q GY +EAL LF+ M+  ++KPN +T++ +L AC+    ++ G   
Sbjct: 393 RDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLG--- 449

Query: 395 FKSMKKFY---GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            KS+  F     +D      + ++ +  + G    A+   + M    D VTW +L+  
Sbjct: 450 -KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSLING 505



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 144/289 (49%), Gaps = 15/289 (5%)

Query: 167 LREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           L      N   Y  +L +C  L  L Q+H  II  GF+    + + LI++Y+   +   A
Sbjct: 24  LSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLA 82

Query: 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
             VF+  P    ++WNS+I  + ++   +EAL +Y  M   G   D+ T T VL+ACTG 
Sbjct: 83  RSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGA 142

Query: 287 ALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
             L+ G   H  + +   + D+ +   L+DMY K G L+ A  VF +M ++DV++W+ MI
Sbjct: 143 LNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMI 202

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI 404
           +GL+Q+    EA+  F SM++  ++P+ ++++ +         +E         +  +G 
Sbjct: 203 AGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIE-------LCRSIHGY 255

Query: 405 DPGREHYSC----MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
              R+  S     +IDL  + G +  A ++  +M  + D V+W  ++  
Sbjct: 256 VFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTMMAG 303


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/561 (40%), Positives = 344/561 (61%), Gaps = 6/561 (1%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           +V     +H  V+      + F+ + L++M+ K    E+AQ LFD+MP +++VSW +++S
Sbjct: 77  SVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMS 136

Query: 149 AYCDAKMNDKALELLIFMLRE-GVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFE 204
                      L     M  E G +PN  T  +V+ AC  +  L   + LH  ++K+G  
Sbjct: 137 GLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMS 196

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
               V ++LI++Y KLG L  A  +F EMP R LV WNS++     N   ++ ++L+  M
Sbjct: 197 GKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLM 256

Query: 265 KRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSL 322
           KRAG   DQ+T+ ++LRACT   L      +H  +H   ++ D+I+  ALL++Y K G L
Sbjct: 257 KRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRL 316

Query: 323 EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
             +  +F  +  +D I+W+ M++G A +   +EA+KLF+ M    ++ +++T   +L AC
Sbjct: 317 NASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSAC 376

Query: 383 SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
           SH+G VE+G  +F+ M + Y ++P  +HYSCM+DLLGR+G+L++A +LI  MP EP +  
Sbjct: 377 SHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGV 436

Query: 443 WRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502
           W ALLGAC+V+ N +L    A+++L+LDP D   YI+LSNIY+ +  W + ++VR  M+ 
Sbjct: 437 WGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKE 496

Query: 503 RGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQD 562
           R +T+ PGCS+IE   +IH F V D  HP+ D+I+  L+ LI+K+   G AP T +VL D
Sbjct: 497 RRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHD 556

Query: 563 LEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIV 622
           ++ E K D I  HSEKLAI FGL+    G  + I KNLRICGDCH+ AK  + +E +TI+
Sbjct: 557 IDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTII 616

Query: 623 IRDPIRYHHFQDGNCSCGDYW 643
           IRD  R+HHF DG CSC DYW
Sbjct: 617 IRDSKRFHHFADGLCSCRDYW 637



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 147/270 (54%), Gaps = 6/270 (2%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G + + VT   ++  C    A++E K +H  V+  G   +  +VN L+NM+ K   L+ A
Sbjct: 159 GRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAA 218

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
             LF++MP R++VSW +M+  +      +K ++L   M R G+ P+  T  A+LRAC   
Sbjct: 219 SQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDT 278

Query: 189 IILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
            + RQ   +H  I + GF +D+ + +AL+++YAKLG L  +E +F E+  RD + W +++
Sbjct: 279 GLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAML 338

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT---QVHVHVLKY 302
            G+A ++   EA+ L+  M + G   D  T T +L AC+   L+E G    ++   V + 
Sbjct: 339 AGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRV 398

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           +  L   + ++D+  + G LEDA  +   M
Sbjct: 399 EPRLDHYSCMVDLLGRSGRLEDAYELIKSM 428



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 148/290 (51%), Gaps = 11/290 (3%)

Query: 173 PNMFTYSAV------LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           P    YS V      + +C S+     +H  +IK    SD F+   L+ +Y KLG   +A
Sbjct: 57  PPFQVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDA 116

Query: 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK-RAGFAADQSTLTSVLRACTG 285
           + +F+EMP +DLV WNS++ G +    +   LN + RM+  +G   ++ TL SV+ AC  
Sbjct: 117 QRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAD 176

Query: 286 LALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           +  L+ G  +H  V+K        + N+L++MY K G L+ A  +F  M  + ++SW++M
Sbjct: 177 MGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSM 236

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           +     NGY+++ + LF  MK + I P+  T+V +L AC+  G      +    + +  G
Sbjct: 237 VVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHR-CG 295

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            +      + +++L  + G+L  +  +  E+  + D + W A+L    VH
Sbjct: 296 FNADIIIATALLNLYAKLGRLNASEDIFEEIK-DRDRIAWTAMLAGYAVH 344



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 99/204 (48%), Gaps = 21/204 (10%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           + M   + M+  G+  D  T   L++ C       +A+ +H ++   GF  +  +   LL
Sbjct: 248 KGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALL 307

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           N++ K   L  ++ +F+++ +R+ ++WT M++ Y       +A++L   M++EGV  +  
Sbjct: 308 NLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHV 367

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVG---FE--SDVFV-------RSALIDIYAKLGELR 224
           T++ +L AC         H G+++ G   FE  S+V+         S ++D+  + G L 
Sbjct: 368 TFTHLLSACS--------HSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLE 419

Query: 225 NAECVFNEMPTRDLV-VWNSIIGG 247
           +A  +   MP      VW +++G 
Sbjct: 420 DAYELIKSMPMEPSSGVWGALLGA 443


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 346/574 (60%), Gaps = 6/574 (1%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           T+  ++  C     +++ + +H  + S G E +  L N LL M+ +   L++A  +F ++
Sbjct: 223 TFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRL 282

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ-- 193
           P R+VVSW+ MI+A+ +  + D+A+E    M  EGVRPN +T+++VL AC S+  LR   
Sbjct: 283 PRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGR 342

Query: 194 -LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            +H  I+  G++  +   +AL+D+Y   G L  A  +F+++  RD  +W  +IGG+++  
Sbjct: 343 AVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQG 402

Query: 253 DVDEALNLYKRMKRAG-FAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILN 309
                L LY+ MK      A +   + V+ AC  L       Q H  +       D +L 
Sbjct: 403 HRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLA 462

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
            +L++MY + G+LE A  VF +M  +D ++W+T+I+G A++G    AL L++ M++   +
Sbjct: 463 TSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAE 522

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           P+ +T + VL+ACSHAG  E G   F S++  Y + P   HYSC+IDLL RAG+L +A +
Sbjct: 523 PSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEE 582

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489
           LI+ MP EP+ VTW +LLGA ++H++   A  AA +I  LDP DP +Y+LLSN++A +  
Sbjct: 583 LINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGN 642

Query: 490 WDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549
              +A VR TM ARG+ K  G SWIEV  QIH FNV D+SHP+  +I   L+ L  K+  
Sbjct: 643 LAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKE 702

Query: 550 VGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
            GY P++  VL D+  ++KE  ++ HSEKLAI FGL++   G T+RI   LRIC DCH+ 
Sbjct: 703 AGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSA 762

Query: 610 AKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            K  + +  + I++RD  R+H F+DG CSCGDYW
Sbjct: 763 VKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/390 (31%), Positives = 200/390 (51%), Gaps = 22/390 (5%)

Query: 69  GVRADSVT-YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           G R DS   Y + ++ C     +E  + +H+ + SG      FL N ++  + K   +  
Sbjct: 21  GSRFDSSGHYRDALRQC---QDLESVRQIHDRI-SGAASANVFLGNEIVRAYGKCGSVAS 76

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A+V FD +  +N  SW +M++AY        AL+L     R  ++PN   Y+ VL AC S
Sbjct: 77  ARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDL---YKRMDLQPNPVVYTTVLGACAS 133

Query: 188 LIILRQ---LHCGIIKV-GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV-VWN 242
           +  L +   +H  I    G + DV + ++L+ +YAK G L +A+ +F  M  R  V  WN
Sbjct: 134 IEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWN 193

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVL 300
           ++I  +AQ+   +EA+ LY+ M          T TSVL AC+ L LL+ G ++H  +   
Sbjct: 194 AMIAAYAQSGHFEEAIRLYEDMD---VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSR 250

Query: 301 KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
             + DL L NALL MY +C  L+DA  +F R+ ++DV+SWS MI+  A+     EA++ +
Sbjct: 251 GTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFY 310

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLG 419
             M++  ++PNY T   VL AC+  G +  G   H + +   Y I     + + ++DL  
Sbjct: 311 SKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITL--VNGTALVDLYT 368

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
             G L EA  L  ++    + + W  L+G 
Sbjct: 369 SYGSLDEARSLFDQIENRDEGL-WTVLIGG 397



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 152/296 (51%), Gaps = 10/296 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    MQ  GVR +  T+A ++  C +   +   + VH+ +L  G++        L++
Sbjct: 306 AIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVD 365

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP-NMF 176
           ++  +  L+EA+ LFDQ+  R+   WT +I  Y         LEL   M      P    
Sbjct: 366 LYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKI 425

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
            YS V+ AC SL      RQ H  I   G  SD  + ++L+++Y++ G L +A  VF++M
Sbjct: 426 IYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKM 485

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
            +RD + W ++I G+A++ +   AL LYK M+  G    + T   VL AC+   L E G 
Sbjct: 486 SSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGK 545

Query: 294 QVHVHVLKYDHDLILNNA----LLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMI 344
           Q+ + + + D+ +  N A    ++D+  + G L DA  + + M ++ + ++WS+++
Sbjct: 546 QLFISI-QSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLL 600



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 15/211 (7%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V A  + Y+ +I  C +  A  +A+  H+ + + G   +  L   L+NM+ ++  LE A+
Sbjct: 420 VPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESAR 479

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            +FD+M  R+ ++WTT+I+ Y     +  AL L   M  EG  P+  T+  VL AC    
Sbjct: 480 QVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAG 539

Query: 190 ILRQLHCGIIKV----GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSI 244
           +  Q     I +        ++   S +ID+ ++ G L +AE + N MP   + V W+S+
Sbjct: 540 LQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSL 599

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           +G          A  ++K +KRA  AA Q T
Sbjct: 600 LG----------ASRIHKDVKRATHAAGQIT 620



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 123/307 (40%), Gaps = 72/307 (23%)

Query: 265 KRAGFAADQST-LTSVLRACTGLALLELGTQVHVHVL-KYDHDLILNNALLDMYCKCGSL 322
           ++AG   D S      LR C  L   E   Q+H  +      ++ L N ++  Y KCGS+
Sbjct: 18  EKAGSRFDSSGHYRDALRQCQDL---ESVRQIHDRISGAASANVFLGNEIVRAYGKCGSV 74

Query: 323 EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
             A   F  + +K+  SW +M++  AQNG+ + AL L++ M    ++PN +    VL AC
Sbjct: 75  ASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMD---LQPNPVVYTTVLGAC 131

Query: 383 SHAGFVEDG-----------------------------WNHFKSMKKFYGIDPGREHYS- 412
           +    +E+G                                 +  K+ +    GR   S 
Sbjct: 132 ASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSS 191

Query: 413 --CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC----------KVH-----RN 455
              MI    ++G  +EA++L  +M  EP   T+ ++L AC          K+H     R 
Sbjct: 192 WNAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRG 251

Query: 456 TDL------------AIC-----AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRK 498
           T+L            A C     AAK    L  +D  ++  +   +A +  +DE  E   
Sbjct: 252 TELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYS 311

Query: 499 TMRARGI 505
            M+  G+
Sbjct: 312 KMQLEGV 318


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/561 (40%), Positives = 344/561 (61%), Gaps = 6/561 (1%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           +V     +H  V+      + F+ + L++M+ K    E+AQ LFD+MP +++VSW +++S
Sbjct: 134 SVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMS 193

Query: 149 AYCDAKMNDKALELLIFMLRE-GVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFE 204
                      L     M  E G +PN  T  +V+ AC  +  L   + LH  ++K+G  
Sbjct: 194 GLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMS 253

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
               V ++LI++Y KLG L  A  +F EMP R LV WNS++     N   ++ ++L+  M
Sbjct: 254 GKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLM 313

Query: 265 KRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSL 322
           KRAG   DQ+T+ ++LRACT   L      +H  +H   ++ D+I+  ALL++Y K G L
Sbjct: 314 KRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRL 373

Query: 323 EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
             +  +F  +  +D I+W+ M++G A +   +EA+KLF+ M    ++ +++T   +L AC
Sbjct: 374 NASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSAC 433

Query: 383 SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
           SH+G VE+G  +F+ M + Y ++P  +HYSCM+DLLGR+G+L++A +LI  MP EP +  
Sbjct: 434 SHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGV 493

Query: 443 WRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502
           W ALLGAC+V+ N +L    A+++L+LDP D   YI+LSNIY+ +  W + ++VR  M+ 
Sbjct: 494 WGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKE 553

Query: 503 RGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQD 562
           R +T+ PGCS+IE   +IH F V D  HP+ D+I+  L+ LI+K+   G AP T +VL D
Sbjct: 554 RRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHD 613

Query: 563 LEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIV 622
           ++ E K D I  HSEKLAI FGL+    G  + I KNLRICGDCH+ AK  + +E +TI+
Sbjct: 614 IDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTII 673

Query: 623 IRDPIRYHHFQDGNCSCGDYW 643
           IRD  R+HHF DG CSC DYW
Sbjct: 674 IRDSKRFHHFADGLCSCRDYW 694



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 147/270 (54%), Gaps = 6/270 (2%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G + + VT   ++  C    A++E K +H  V+  G   +  +VN L+NM+ K   L+ A
Sbjct: 216 GRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAA 275

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
             LF++MP R++VSW +M+  +      +K ++L   M R G+ P+  T  A+LRAC   
Sbjct: 276 SQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDT 335

Query: 189 IILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
            + RQ   +H  I + GF +D+ + +AL+++YAKLG L  +E +F E+  RD + W +++
Sbjct: 336 GLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAML 395

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT---QVHVHVLKY 302
            G+A ++   EA+ L+  M + G   D  T T +L AC+   L+E G    ++   V + 
Sbjct: 396 AGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRV 455

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           +  L   + ++D+  + G LEDA  +   M
Sbjct: 456 EPRLDHYSCMVDLLGRSGRLEDAYELIKSM 485



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 144/275 (52%), Gaps = 5/275 (1%)

Query: 182 LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           + +C S+     +H  +IK    SD F+   L+ +Y KLG   +A+ +F+EMP +DLV W
Sbjct: 129 ISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSW 188

Query: 242 NSIIGGFAQNSDVDEALNLYKRMK-RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           NS++ G +    +   LN + RM+  +G   ++ TL SV+ AC  +  L+ G  +H  V+
Sbjct: 189 NSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVV 248

Query: 301 KY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K        + N+L++MY K G L+ A  +F  M  + ++SW++M+     NGY+++ + 
Sbjct: 249 KLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMD 308

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
           LF  MK + I P+  T+V +L AC+  G      +    + +  G +      + +++L 
Sbjct: 309 LFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRC-GFNADIIIATALLNLY 367

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            + G+L  +  +  E+  + D + W A+L    VH
Sbjct: 368 AKLGRLNASEDIFEEIK-DRDRIAWTAMLAGYAVH 401



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 120/251 (47%), Gaps = 26/251 (10%)

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN--------LYKRMKR------ 266
           G+    E VFN+  TR  V WNSI+      + +    +        + K+ KR      
Sbjct: 46  GQRGGLEIVFNQQLTRLAVPWNSIVSPVRCGTSISHNRSFAFRHTDLIPKQFKRFNTNKG 105

Query: 267 -------AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYC 317
                  + F    S + S++ A +    +   + +H  V+K  +  D  + + L+ MY 
Sbjct: 106 CCIFREASQFIVVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYF 165

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV-SRIKPNYITIV 376
           K G  EDA  +F  M  KD++SW++++SGL+  GY    L  F  M+  S  +PN +T++
Sbjct: 166 KLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLL 225

Query: 377 GVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY 436
            V+ AC+  G +++G +    + K  G+    +  + +I++ G+ G L  A +L  EMP 
Sbjct: 226 SVVSACADMGALDEGKSLHGVVVKL-GMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPV 284

Query: 437 EPDAVTWRALL 447
               V+W +++
Sbjct: 285 R-SLVSWNSMV 294



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 99/203 (48%), Gaps = 21/203 (10%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           + M   + M+  G+  D  T   L++ C       +A+ +H ++   GF  +  +   LL
Sbjct: 305 KGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALL 364

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           N++ K   L  ++ +F+++ +R+ ++WT M++ Y       +A++L   M++EGV  +  
Sbjct: 365 NLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHV 424

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVG---FE--SDVFV-------RSALIDIYAKLGELR 224
           T++ +L AC         H G+++ G   FE  S+V+         S ++D+  + G L 
Sbjct: 425 TFTHLLSACS--------HSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLE 476

Query: 225 NAECVFNEMPTRDLV-VWNSIIG 246
           +A  +   MP      VW +++G
Sbjct: 477 DAYELIKSMPMEPSSGVWGALLG 499


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 248/631 (39%), Positives = 356/631 (56%), Gaps = 14/631 (2%)

Query: 19  RQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYA 78
           R F L   PP ++     R+ + L+  F R  +  D       M  +    V  D  T A
Sbjct: 123 RLFRLGPHPPRSA-----RSYNILIRSFLRAGHPEDALHLFVEM--LDDTAVSPDQHTVA 175

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
             +K C     +   + V  +    GF  + F++N L++M+     +  A VLF  +  +
Sbjct: 176 NTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVK 235

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGI 198
            V++W  MI+ Y       + +E+   ML      +  T  +V  AC  L     L   I
Sbjct: 236 GVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDA-NLGQWI 294

Query: 199 IKVGFESDVF----VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
            +   E  +     + +AL+D+YAK GEL  A  +F+ M +RD+V W+++I G+ Q+   
Sbjct: 295 AEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRC 354

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNAL 312
            EAL ++  M+      +  T+ SVL AC  L  LE G  VH ++ + D  L  IL  AL
Sbjct: 355 REALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTAL 414

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           +D Y KCG ++DA+  F  M  ++  +W+ +I G+A NG S+EAL+LF SM  + I+P  
Sbjct: 415 VDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTD 474

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           +T +GVL ACSH   VE+G  HF SM + YGI P  EHY CM+DLLGRAG + EA + I 
Sbjct: 475 VTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIR 534

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
            MP EP+AV WRALL AC VH+N ++   A K+I+ LDP   G YILLSN YA+  +W  
Sbjct: 535 NMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKN 594

Query: 493 VAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGY 552
            A VRK M+ +G+ K PGCS IE+   I  F   DS HPQ+ +I + +  +I+ +  VGY
Sbjct: 595 AAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGY 654

Query: 553 APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
            P+T     D++  +K+ S+ +HSEKLAI FGLM    G TIR+ KNLR+C DCH+  KL
Sbjct: 655 IPNTADARLDVDEYEKQVSVSHHSEKLAIAFGLMKSRPGATIRLSKNLRVCIDCHSATKL 714

Query: 613 TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +K+ N+ I++RD  R+HHF+DG CSC DYW
Sbjct: 715 ISKVYNREIIVRDRNRFHHFKDGLCSCNDYW 745


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/630 (36%), Positives = 378/630 (60%), Gaps = 17/630 (2%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAEL 80
           F+    P    CNT+ R           +   ++   A+   + M   GV  D+ TY  +
Sbjct: 68  FTQMQNPDPFICNTMIRG----------YARSQNPYEAVSLYYFMVERGVPVDNYTYPFV 117

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
           +  C    AV+  +  H  VL  GF  + F++N L+  +        A  +FD+   R+V
Sbjct: 118 LAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDV 177

Query: 141 VSWTTMISAYCDAKMNDKALELLIFMLR-EGVRPNMFTYSAVLRACDSLIILRQ---LHC 196
           V+W  MI+A+ +  +++KA +LL  M + + +RP+  T  +++ AC  L  L +   LH 
Sbjct: 178 VTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHS 237

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
              ++G + ++ V +A++D+Y K  ++ +A+ VFN +  +D++ W S++ G A++    E
Sbjct: 238 YSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQE 297

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLD 314
           AL L+++M+      D+ TL  VL AC     L+ G  +H+ + K++   DL+L  AL+D
Sbjct: 298 ALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVD 357

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           MY KCGS++ A+ VF RM  ++V +W+ +I GLA +G+ ++A+ LF+ M+  ++ P+ +T
Sbjct: 358 MYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVT 417

Query: 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
            + +L ACSHAG V++G   F++MK  + I+P  EHY C++DLL RA K+ +A+  I  M
Sbjct: 418 FIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENM 477

Query: 435 PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494
           P + ++V W  LLGAC+   + DLA    ++++ L+P   G Y++LSN+YA   +WD   
Sbjct: 478 PIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHAL 537

Query: 495 EVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL-VGVGYA 553
           ++RK M+ +GI K PGCSWIE+N  IH F   D SH Q ++I   ++ + +++ +  G+ 
Sbjct: 538 KLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHV 597

Query: 554 PDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLT 613
           P T  VL D+E E+KE S+  HSEKLAI  GL+S   G  IRI KNLR+C DCH+F K+T
Sbjct: 598 PGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVT 657

Query: 614 AKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +K+ N+ IV RD  R+HHF++G+CSC D+W
Sbjct: 658 SKVYNREIVARDRSRFHHFKEGSCSCMDFW 687



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/342 (36%), Positives = 192/342 (56%), Gaps = 8/342 (2%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L  A+ LF QM   +     TMI  Y  ++   +A+ L  FM+  GV  + +TY  VL A
Sbjct: 61  LNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAA 120

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C  L  +   R+ HC ++K GF SD+FV +ALI  Y   G    A  VF+E   RD+V W
Sbjct: 121 CARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTW 180

Query: 242 NSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV- 299
           N +I         ++A +L   M K      D+ T+ S++ AC  L  LE G  +H +  
Sbjct: 181 NIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSK 240

Query: 300 -LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
            L  D +L +NNA+LDMYCKC  +E A  VF+R+ +KDV+SW++M+SGLA++GY QEAL 
Sbjct: 241 ELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALA 300

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
           LF+ M++++I+ + IT+VGVL AC+  G ++ G      + KF  I+      + ++D+ 
Sbjct: 301 LFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFE-INCDLVLETALVDMY 359

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            + G +  A+++   M    +  TW AL+G   +H + + AI
Sbjct: 360 AKCGSIDLALQVFRRMRVR-NVFTWNALIGGLAMHGHGEDAI 400



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 136/270 (50%), Gaps = 7/270 (2%)

Query: 185 CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRDLVVWN 242
           C S+   +Q H  +++     +    S LI   A    G+L  A  +F +M   D  + N
Sbjct: 21  CTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICN 80

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK- 301
           ++I G+A++ +  EA++LY  M   G   D  T   VL AC  L  ++LG + H  VLK 
Sbjct: 81  TMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKN 140

Query: 302 -YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
            +  DL + NAL+  Y  CGS   A  VF     +DV++W+ MI+     G S++A  L 
Sbjct: 141 GFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLL 200

Query: 361 ESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           + M K+  ++P+ +T+V ++ AC+  G +E G     S  K  G+D      + ++D+  
Sbjct: 201 DEMTKLDNLRPDEVTMVSLVPACAQLGNLERG-KFLHSYSKELGLDENLRVNNAILDMYC 259

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           +   ++ A ++ + +  E D ++W ++L  
Sbjct: 260 KCDDIESAQEVFNRI-REKDVLSWTSMLSG 288


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 346/574 (60%), Gaps = 6/574 (1%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           T+  ++  C     +++ + +H  + S G E +  L N LL M+ +   L++A  +F ++
Sbjct: 222 TFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRL 281

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ-- 193
           P R+VVSW+ MI+A+ +  + D+A+E    M  EGVRPN +T+++VL AC S+  LR   
Sbjct: 282 PRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGR 341

Query: 194 -LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            +H  I+  G++  +   +AL+D+Y   G L  A  +F+++  RD  +W  +IGG+++  
Sbjct: 342 AVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQG 401

Query: 253 DVDEALNLYKRMKRAG-FAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILN 309
                L LY+ MK      A +   + V+ AC  L       Q H  +       D +L 
Sbjct: 402 HRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLA 461

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
            +L++MY + G+LE A  VF +M  +D ++W+T+I+G A++G    AL L++ M++   +
Sbjct: 462 TSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAE 521

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           P+ +T + VL+ACSHAG  E G   F S++  Y + P   HYSC+IDLL RAG+L +A +
Sbjct: 522 PSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEE 581

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489
           LI+ MP EP+ VTW +LLGA ++H++   A  AA +I  LDP DP +Y+LLSN++A +  
Sbjct: 582 LINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGN 641

Query: 490 WDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549
              +A VR TM ARG+ K  G SWIEV  QIH FNV D+SHP+  +I   L+ L  K+  
Sbjct: 642 LAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKE 701

Query: 550 VGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
            GY P++  VL D+  ++KE  ++ HSEKLAI FGL++   G T+RI   LRIC DCH+ 
Sbjct: 702 AGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSA 761

Query: 610 AKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            K  + +  + I++RD  R+H F+DG CSCGDYW
Sbjct: 762 VKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/427 (29%), Positives = 222/427 (51%), Gaps = 15/427 (3%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSG--GFEPETFLVNILLNMHVKFSLLEE 127
           ++ + V Y  ++  C +  A+EE K +H+ + SG  G + +  L N LL M+ K   LE+
Sbjct: 117 LQPNPVVYTTVLGACASIKALEEGKAIHSRI-SGTKGLKLDVILENSLLTMYAKCGSLED 175

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A+ LF++M  R+V SW  MI+AY  +   ++A+ L   M    V P++ T+++VL AC +
Sbjct: 176 AKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSN 232

Query: 188 LIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L +L   R++H  I   G E D+ +++AL+ +YA+   L +A  +F  +P RD+V W+++
Sbjct: 233 LGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAM 292

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
           I  FA+    DEA+  Y +M+  G   +  T  SVL AC  +  L  G  VH  +L   +
Sbjct: 293 IAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGY 352

Query: 305 DLILNN--ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
            + L N  AL+D+Y   GSL++A S+F ++  +D   W+ +I G ++ G+    L+L+  
Sbjct: 353 KITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYRE 412

Query: 363 MK-VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
           MK  +++    I    V+ AC+  G   D       ++   G+       + ++++  R 
Sbjct: 413 MKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEA-DGMISDFVLATSLVNMYSRW 471

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           G L+ A ++  +M    D + W  L+     H    LA+   K+ + L+  +P     + 
Sbjct: 472 GNLESARQVFDKMS-SRDTLAWTTLIAGYAKHGEHGLALGLYKE-MELEGAEPSELTFMV 529

Query: 482 NIYANSQ 488
            +YA S 
Sbjct: 530 VLYACSH 536



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 199/389 (51%), Gaps = 21/389 (5%)

Query: 69  GVRADSVT-YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           G R DS   Y + ++ C     +E  + +H+ + SG      FL N ++  + K   +  
Sbjct: 21  GSRFDSSGHYRDALRQC---QDLESVRQIHDRI-SGAASANVFLGNEIVRAYGKCGSVAS 76

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A+  FD +  +N  SW +M++AY        AL+L     R  ++PN   Y+ VL AC S
Sbjct: 77  ARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDL---YKRMDLQPNPVVYTTVLGACAS 133

Query: 188 LIILRQ---LHCGIIKV-GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
           +  L +   +H  I    G + DV + ++L+ +YAK G L +A+ +F  M  R +  WN+
Sbjct: 134 IKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNA 193

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLK 301
           +I  +AQ+   +EA+ LY+ M          T TSVL AC+ L LL+ G ++H  +    
Sbjct: 194 MIAAYAQSGHFEEAIRLYEDMD---VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRG 250

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
            + DL L NALL MY +C  L+DA  +F R+ ++DV+SWS MI+  A+     EA++ + 
Sbjct: 251 TELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYS 310

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGR 420
            M++  ++PNY T   VL AC+  G +  G   H + +   Y I     + + ++DL   
Sbjct: 311 KMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITL--VNGTALVDLYTS 368

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            G L EA  L  ++    + + W  L+G 
Sbjct: 369 YGSLDEARSLFDQIENRDEGL-WTVLIGG 396



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 152/296 (51%), Gaps = 10/296 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    MQ  GVR +  T+A ++  C +   +   + VH+ +L  G++        L++
Sbjct: 305 AIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVD 364

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP-NMF 176
           ++  +  L+EA+ LFDQ+  R+   WT +I  Y         LEL   M      P    
Sbjct: 365 LYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKI 424

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
            YS V+ AC SL      RQ H  I   G  SD  + ++L+++Y++ G L +A  VF++M
Sbjct: 425 IYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKM 484

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
            +RD + W ++I G+A++ +   AL LYK M+  G    + T   VL AC+   L E G 
Sbjct: 485 SSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGK 544

Query: 294 QVHVHVLKYDHDLILNNA----LLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMI 344
           Q+ + + + D+ +  N A    ++D+  + G L DA  + + M ++ + ++WS+++
Sbjct: 545 QLFISI-QSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLL 599



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 15/211 (7%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V A  + Y+ +I  C +  A  +A+  H+ + + G   +  L   L+NM+ ++  LE A+
Sbjct: 419 VPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESAR 478

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            +FD+M  R+ ++WTT+I+ Y     +  AL L   M  EG  P+  T+  VL AC    
Sbjct: 479 QVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAG 538

Query: 190 ILRQLHCGIIKV----GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSI 244
           +  Q     I +        ++   S +ID+ ++ G L +AE + N MP   + V W+S+
Sbjct: 539 LQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSL 598

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           +G          A  ++K +KRA  AA Q T
Sbjct: 599 LG----------ASRIHKDVKRATHAAGQIT 619


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/668 (36%), Positives = 386/668 (57%), Gaps = 43/668 (6%)

Query: 14  PSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD 73
           P  +   +++++   +   N +  N+      F       D   A+K    M   G+  +
Sbjct: 79  PHFEGLPYAISVFKTIQEPNLLIWNTM-----FRGHALSSDPVSALKLYVCMISLGLLPN 133

Query: 74  SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA----- 128
           S T+  ++K C    A +E + +H HVL  G + + ++   L++M+V+   LE+A     
Sbjct: 134 SYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFD 193

Query: 129 --------------------------QVLFDQMPERNVVSWTTMISAYCDAKMNDKALEL 162
                                     Q LFD++P ++VVSW  MIS Y +     +ALEL
Sbjct: 194 KSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALEL 253

Query: 163 LIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
              M++  VRP+  T   V+ AC    S+ + RQ+H  I   GF S++ + +ALID+Y+K
Sbjct: 254 FKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSK 313

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
            GEL  A  +F  +P +D++ WN++IGG+   +   EAL L++ M R+G   +  T+ S+
Sbjct: 314 CGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 373

Query: 280 LRACTGLALLELGTQVHVHVLKYDHDLI----LNNALLDMYCKCGSLEDAMSVFSRMIQK 335
           L AC  L  +++G  +HV++ K    +     L  +L+DMY KCG +E A  VF+ ++ K
Sbjct: 374 LPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHK 433

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
            + SW+ MI G A +G +  +  LF  M+   I+P+ IT VG+L ACSH+G ++ G + F
Sbjct: 434 SLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIF 493

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN 455
           ++M + Y + P  EHY CMIDLLG +G  +EA ++I+ M  EPD V W +LL ACK+H N
Sbjct: 494 RTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGN 553

Query: 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE 515
            +L    A+ ++ ++P++PG+Y+LLSNIYA++ +W+EVA+ R  +  +G+ K PGCS IE
Sbjct: 554 VELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIE 613

Query: 516 VNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYH 575
           ++  +H F + D  HP+  +I   L+ +   L   G+ PDT+ VLQ++E E KE ++++H
Sbjct: 614 IDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHH 673

Query: 576 SEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDG 635
           SEKLAI FGL+S   G  + I KNLR+C +CH   KL +K+  + I+ RD  R+HHF+DG
Sbjct: 674 SEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDG 733

Query: 636 NCSCGDYW 643
            CSC DYW
Sbjct: 734 VCSCNDYW 741



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 138/516 (26%), Positives = 251/516 (48%), Gaps = 69/516 (13%)

Query: 31  SCNTITRNSSSLLDDFTRFCYQRDLPR-------AMKAMHAMQCHGVRADSVTYAELIKC 83
           SC+ +T  SSS    F       D P        ++  +H   C  +++  + +A++IK 
Sbjct: 4   SCSPLTVPSSSY--PFHFLPSSSDPPYDSIRNHPSLSLLH--NCKTLQSLRIIHAQMIKI 59

Query: 84  CLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSW 143
            L       +KL+   +LS  FE   + +++                 F  + E N++ W
Sbjct: 60  GLHNTNYALSKLIEFCILSPHFEGLPYAISV-----------------FKTIQEPNLLIW 102

Query: 144 TTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIK 200
            TM   +  +     AL+L + M+  G+ PN +T+  VL++C      +   Q+H  ++K
Sbjct: 103 NTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLK 162

Query: 201 VGFESDVFVRSALIDIYAKLGEL-------------------------------RNAECV 229
           +G + D++V ++LI +Y + G L                                NA+ +
Sbjct: 163 LGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKL 222

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F+E+P +D+V WN++I G+A+  +  EAL L+K M +     D+ST+ +V+ AC     +
Sbjct: 223 FDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSI 282

Query: 290 ELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
           ELG QVH+ +    +  +L + NAL+D+Y KCG LE A  +F R+  KDVISW+T+I G 
Sbjct: 283 ELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGY 342

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDP 406
                 +EAL LF+ M  S   PN +T++ +L AC+H G ++ G W H    K+  G+  
Sbjct: 343 THMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTN 402

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA--ICAAK 464
                + +ID+  + G ++ A ++ + + ++    +W A++    +H   D +  + +  
Sbjct: 403 ASSLRTSLIDMYAKCGDIEAAHQVFNSILHK-SLSSWNAMIFGFAMHGRADASFDLFSRM 461

Query: 465 KILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTM 500
           + + + P D  T++ L +  ++S   D    + +TM
Sbjct: 462 RKIGIQPDDI-TFVGLLSACSHSGMLDLGRHIFRTM 496


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/584 (38%), Positives = 352/584 (60%), Gaps = 19/584 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL---L 125
           G   D  T + +I  C    +V     +H+  L  GF  +  +   L++M+ K ++   +
Sbjct: 249 GFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAM 308

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMND-KALELLIFMLREGVRPNMFTYSAVLRA 184
           + A  +F++M + +V+SWT +IS Y  + + + K + L   ML E ++PN  TYS++L+A
Sbjct: 309 DYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKA 368

Query: 185 CDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C ++      RQ+H  +IK    +   V +AL+ +YA+ G +  A  VFN++  R     
Sbjct: 369 CANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYER----- 423

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            S+I    +  D      L  R+ R       ST  S++ A   + +L  G Q+H   LK
Sbjct: 424 -SMISCITEGRDAP----LDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLK 478

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
             +  D  ++N+L+ MY +CG LEDA   F+ +  ++VISW++MISGLA++GY++ AL L
Sbjct: 479 AGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSL 538

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F  M ++ +KPN +T + VL ACSH G V +G  +F+SM++ +G+ P  EHY+CM+DLL 
Sbjct: 539 FHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLA 598

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           R+G ++EA++ I+EMP + DA+ W+ LLGAC+ H N ++   AAK ++ L+P+DP  Y+L
Sbjct: 599 RSGLVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVL 658

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LSN+YA++  WDEVA +R  MR   + KE G SW+EV    H F   D+SHP+   I   
Sbjct: 659 LSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGK 718

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
           L  L+ ++ G+GY PDT+ VL D+  E KE  +  HSEK+A+ FGL++ +  K IRI KN
Sbjct: 719 LDTLVGEIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKN 778

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           LR+C DCH+  K  +K   + I++RD  R+H  +DG CSCG+YW
Sbjct: 779 LRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 167/310 (53%), Gaps = 23/310 (7%)

Query: 93  AKLVHNHVLSGGF-EPETFLVNILLNMHVKFSLLEEAQVLFDQMPE-RNVVSWTTMISAY 150
            + +H  +L G   + +  + N LL ++ +   +  A+ +FD M   R++VSWT M S  
Sbjct: 67  GRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCL 126

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGII--------KVG 202
                  ++L L+  ML  G+ PN +T  AV  AC       +L+C +         K+G
Sbjct: 127 ARNGAERESLLLIGEMLESGLLPNAYTLCAVAHAC----FPHELYCLVGGVVLGLVHKMG 182

Query: 203 -FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLY 261
            + +D+ V SALID+ A+ G+L +A  VF+ +  + +VVW  +I  + Q    +EA+ ++
Sbjct: 183 LWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIF 242

Query: 262 KRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKC 319
                 GF  D+ T++S++ ACT L  + LG Q+H   L+  +  D  ++  L+DMY K 
Sbjct: 243 LDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAK- 301

Query: 320 GSLEDAMS----VFSRMIQKDVISWSTMISGLAQNGYSQ-EALKLFESMKVSRIKPNYIT 374
            ++E AM     VF RM + DVISW+ +ISG  Q+G  + + + LF  M    IKPN+IT
Sbjct: 302 SNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHIT 361

Query: 375 IVGVLFACSH 384
              +L AC++
Sbjct: 362 YSSILKACAN 371


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/617 (38%), Positives = 345/617 (55%), Gaps = 7/617 (1%)

Query: 34  TITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEA 93
           T  RN  S     +          A+     M+  GV  +  T+  + K   +       
Sbjct: 68  TPARNVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTG 127

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
           K +H   +  G   + F+     +M+ K  L ++A+ LFD++PERN+ +W   IS     
Sbjct: 128 KQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTD 187

Query: 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVR 210
               +A+E  I   R G +PN  T+   L AC   ++L    Q+H  + + GF++DV V 
Sbjct: 188 GRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVY 247

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
           + LID Y K  ++R++E +F EM  ++ V W S++  + QN + ++A  LY R ++    
Sbjct: 248 NGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVE 307

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSV 328
                ++SVL AC G+A LELG  +H H +K   + ++ + +AL+DMY KCG +ED+   
Sbjct: 308 TSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQA 367

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM--KVSRIKPNYITIVGVLFACSHAG 386
           F  M +K++++ +++I G A  G    AL LFE M  +     PNY+T V +L ACS AG
Sbjct: 368 FDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAG 427

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            VE+G   F SMK  YGI+PG EHYSC++D+LGRAG +++A + I +MP +P    W AL
Sbjct: 428 AVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGAL 487

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
             AC++H    L I AA+ +  LDP+D G ++LLSN +A + +W E   VR+ M+  GI 
Sbjct: 488 QNACRMHGKPHLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIK 547

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           K  G SWI V  Q+HAF   D SH    +I   L  L  K+   GY PD    L DLE E
Sbjct: 548 KGAGYSWITVKNQVHAFQAKDRSHKMNKEIQTMLTKLRNKMEAAGYKPDLKLSLYDLEEE 607

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
           +K   + +HSEKLA+ FGL++L     IRI KNLRICGDCH+F K  +    + I++RD 
Sbjct: 608 EKAAEVSHHSEKLALAFGLVALPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDN 667

Query: 627 IRYHHFQDGNCSCGDYW 643
            R+H F+DG CSC DYW
Sbjct: 668 NRFHRFKDGICSCKDYW 684



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 195/394 (49%), Gaps = 22/394 (5%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSG-GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
           L+K  ++  ++   ++VH  ++      P  FL N L+NM+ K    E A+++    P R
Sbjct: 12  LLKNAISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPAR 71

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLH 195
           NVVSWT+++S          AL     M REGV PN FT+  V +A  SL   +  +Q+H
Sbjct: 72  NVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIH 131

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
              +K G   DVFV  +  D+Y K     +A  +F+E+P R+L  WN+ I     +    
Sbjct: 132 ALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPK 191

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
           EA+  +   +R G   +  T    L AC+   LL+LG Q+H  V +  +D D+ + N L+
Sbjct: 192 EAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLI 251

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           D Y KC  +  +  +F+ M  K+ +SW ++++   QN   ++A  L+   +   ++ +  
Sbjct: 252 DFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDF 311

Query: 374 TIVGVLFACSHAGFVEDGWN-HFKSMKK------FYGIDPGREHYSCMIDLLGRAGKLQE 426
            I  VL AC+    +E G + H  ++K       F G        S ++D+ G+ G +++
Sbjct: 312 MISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVG--------SALVDMYGKCGCIED 363

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           + +   EMP E + VT  +L+G        D+A+
Sbjct: 364 SEQAFDEMP-EKNLVTLNSLIGGYAHQGQVDMAL 396


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/550 (39%), Positives = 327/550 (59%), Gaps = 5/550 (0%)

Query: 99  HVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
           H+  G  +      NIL+   +K   L  A+ LFD+MP RNV +W  M++   +  +++ 
Sbjct: 98  HLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMPTRNVATWNAMVAGLTNVGLDED 157

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALID 215
           +L+  + M REG+ P+ F   +V R C  L+ +   RQ+H  +++ G +SD+ V ++L  
Sbjct: 158 SLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAH 217

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           +Y + G L   E V   +P+  +V +N+ I G  QN D + AL  +  M+    A D  T
Sbjct: 218 MYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVT 277

Query: 276 LTSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMI 333
             S +  C+ LA L  G QVH  V+K   D ++    +L+ MY +CG L D+  V+    
Sbjct: 278 FVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYC 337

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393
             D+   S MIS    +G   +A++LF+ M     +PN +T + +L+ACSH+G  ++G  
Sbjct: 338 GLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLE 397

Query: 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            F+ M K YG  P  +HY+C++DLLGR+G L EA  LI  MP   D V W+ LL ACK  
Sbjct: 398 FFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAEALILSMPVRADGVIWKTLLSACKTQ 457

Query: 454 RNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSW 513
           +N D+A   A++++  DP+D   Y+LLSNI A S++W +V EVRK MR + I KEPG SW
Sbjct: 458 KNFDMAERIAERVIESDPRDSAPYVLLSNIRATSKRWGDVTEVRKIMREKDIRKEPGVSW 517

Query: 514 IEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQ 573
           +E   Q+H F   D SHP+  +I+++LK ++ K+   GYAPD   V  D+E E+KE S+ 
Sbjct: 518 VEHKGQVHQFCTGDKSHPRQGEIDEYLKEMMGKIRQCGYAPDMTMVFHDMEDEEKEVSLT 577

Query: 574 YHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQ 633
           +HSEKLAI F  ++L +G  IR+ KNLR+C DCH   KL +++  + IV+RD  R+HHF+
Sbjct: 578 HHSEKLAIAFAFLNLPEGVPIRVMKNLRVCDDCHVAIKLISQVTGREIVVRDVSRFHHFR 637

Query: 634 DGNCSCGDYW 643
           DG CSCGDYW
Sbjct: 638 DGRCSCGDYW 647


>gi|326528959|dbj|BAJ97501.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 514

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/511 (42%), Positives = 319/511 (62%), Gaps = 11/511 (2%)

Query: 141 VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR----QLHC 196
           V++   IS    A ++ +AL LL  M   G R + +T    L   +S  +LR     LH 
Sbjct: 7   VAYNAAISRCSRAGLHQRALALLHEMRARGHRADEYTLPPAL---NSAALLRLPADALHS 63

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
            +++ G  + + V +AL+D YAKL     A  VF+EMP RD+V W S++ G A++   D 
Sbjct: 64  LLLRAGLAAHLHVANALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLARSRSHDS 123

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD--LILNNALLD 314
           AL +Y+ M  AG   D+  + + L +C G   LELG  VH   ++   D  L + N+L+ 
Sbjct: 124 ALQVYRDMVAAGVGPDEFAVAAALSSCAGATALELGRSVHAAAVRLALDPFLSVGNSLVS 183

Query: 315 MYCKCGSLEDAMSVF--SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           MY K GSL +A  VF  +R+ + D I+W+ +I G AQNG  +E+L+++  M  S  +P+Y
Sbjct: 184 MYAKTGSLGEAKKVFDATRVDRCDPITWTALIVGYAQNGRGRESLEIYADMVRSGCRPDY 243

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           +T +G+LFACSHAG V+ G  HF+SM+  +GI PG +HY+CM+DLLGRAG+L EA+ L++
Sbjct: 244 VTFIGLLFACSHAGLVDAGRAHFRSMQAEHGIAPGADHYACMVDLLGRAGRLDEAMDLLN 303

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
                 DA  W+ALL AC+ HRN +LA  AA  +  LDP D   Y++LSN+Y+ + +W +
Sbjct: 304 RSTTRLDATVWKALLAACRTHRNAELAEHAAAMVWRLDPTDAVPYVMLSNLYSRAGRWGD 363

Query: 493 VAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGY 552
           VA VR +M+ARGITKEPGCSW+  N   H F V D  HP+  ++ + ++ + +++ G GY
Sbjct: 364 VARVRTSMKARGITKEPGCSWVAANGVTHLFYVEDRRHPRAAEVYRKVEEMTERIRGQGY 423

Query: 553 APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
             DT + LQD   E +E  + +HSE+LA+ FGL+++  G  IR+ KNLR+CGDCH   K+
Sbjct: 424 VADTAWALQDEGPEGREKGLAHHSERLAVAFGLLAVPAGAPIRVFKNLRVCGDCHAAIKM 483

Query: 613 TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            A+   + IV+RD   +HH +DG CSCGDYW
Sbjct: 484 VAQAYGREIVLRDSNCFHHMKDGACSCGDYW 514



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 165/336 (49%), Gaps = 30/336 (8%)

Query: 23  LTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAE-LI 81
           + + P VA    I+R S + L             RA+  +H M+  G RAD  T    L 
Sbjct: 1   MVVPPGVAYNAAISRCSRAGLHQ-----------RALALLHEMRARGHRADEYTLPPALN 49

Query: 82  KCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVV 141
              L R     A  +H+ +L  G      + N L++ + K S    A+ +FD+MP R+VV
Sbjct: 50  SAALLR---LPADALHSLLLRAGLAAHLHVANALVDAYAKLSRHGAARAVFDEMPRRDVV 106

Query: 142 SWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGI 198
           SWT++++    ++ +D AL++   M+  GV P+ F  +A L +C     L   R +H   
Sbjct: 107 SWTSLLTGLARSRSHDSALQVYRDMVAAGVGPDEFAVAAALSSCAGATALELGRSVHAAA 166

Query: 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR----DLVVWNSIIGGFAQNSDV 254
           +++  +  + V ++L+ +YAK G L  A+ VF+   TR    D + W ++I G+AQN   
Sbjct: 167 VRLALDPFLSVGNSLVSMYAKTGSLGEAKKVFDA--TRVDRCDPITWTALIVGYAQNGRG 224

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----N 310
            E+L +Y  M R+G   D  T   +L AC+   L++ G + H   ++ +H +        
Sbjct: 225 RESLEIYADMVRSGCRPDYVTFIGLLFACSHAGLVDAG-RAHFRSMQAEHGIAPGADHYA 283

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQK-DVISWSTMIS 345
            ++D+  + G L++AM + +R   + D   W  +++
Sbjct: 284 CMVDLLGRAGRLDEAMDLLNRSTTRLDATVWKALLA 319


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/577 (39%), Positives = 354/577 (61%), Gaps = 6/577 (1%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D  T+  L+K C      +  K++H  V+      + ++   LLNM+     L+ A+ LF
Sbjct: 78  DRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLF 137

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL- 191
           ++M  RN V WT+MIS Y      ++AL L   M  +G  P+  T + ++ AC  L  L 
Sbjct: 138 ERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLG 197

Query: 192 --RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
              +LH  I ++  +    + SAL+++YAK G+L+ A  VF+++  +D+  W+++I G+ 
Sbjct: 198 VGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYV 257

Query: 250 QNSDVDEALNLYKRMKR-AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDL 306
           +N+   EAL L++ +   +    ++ T+ +V+ AC  L  LE G  VH ++ +    H +
Sbjct: 258 KNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSV 317

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
            LNN+L+DM+ KCG ++ A  +F  M  KD+ISW++M++GLA +G  +EAL  F  M+ +
Sbjct: 318 SLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTT 377

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
            ++P+ IT +GVL ACSHAG V++G   F  ++  YG+    EHY CM+DLL RAG L E
Sbjct: 378 DLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAE 437

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           A + I  MP +PD   W ++LGAC+V+ N +L   AA+ +L L+P + G YILLSNIYA 
Sbjct: 438 AREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYAR 497

Query: 487 SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
            + W+EV +VR+ M  +GI K PGCS + ++   H+F   D SHP+I +I+  L+ + +K
Sbjct: 498 RKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREK 557

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           L  VGY  DT+ VL +++  +KE+S+  HSEKLA+ +GL+    G  I I KNLR+C DC
Sbjct: 558 LKLVGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDC 617

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           HT  KL +K+  + I +RD  R+HHF+DG+CSC DYW
Sbjct: 618 HTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 144/298 (48%), Gaps = 24/298 (8%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  G   D VT A L+  C     +     +H+H+     +    L + L+NM+ K   
Sbjct: 171 MEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGD 230

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-----GVRPNMFTYS 179
           L+ A+ +FDQ+ +++V +W+ +I  Y     + +AL+L     RE      +RPN  T  
Sbjct: 231 LKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQL----FREVAGGSNMRPNEVTIL 286

Query: 180 AVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           AV+ AC  L  L   R +H  I +      V + ++LID+++K G++  A+ +F+ M  +
Sbjct: 287 AVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYK 346

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           DL+ WNS++ G A +    EAL  +  M+      D+ T   VL AC+   L++ G ++ 
Sbjct: 347 DLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLF 406

Query: 297 VHV-------LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
             +       LK +H       ++D+ C+ G L +A      M +Q D   W +M+  
Sbjct: 407 YEIEALYGVRLKSEH----YGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGA 460



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 134/273 (49%), Gaps = 13/273 (4%)

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACT 284
           A  VF      D++ WNS++  F  ++    AL  Y  M +R+    D+ T  S+L+ C 
Sbjct: 31  AYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 285 GLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            L   ++G  +H  V+KY    DL +   LL+MY  CG L+ A  +F RM  ++ + W++
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW---NHFKSMK 399
           MISG  +N    EAL L++ M+     P+ +T+  ++ AC+    +  G    +H + M 
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL-GACKVHRNTDL 458
                  G    S ++++  + G L+ A ++  ++  + D   W AL+ G  K +R+T+ 
Sbjct: 211 MKICAVLG----SALVNMYAKCGDLKTARQVFDQLS-DKDVYAWSALIFGYVKNNRSTE- 264

Query: 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
           A+   +++       P    +L+ I A +Q  D
Sbjct: 265 ALQLFREVAGGSNMRPNEVTILAVISACAQLGD 297


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/595 (38%), Positives = 366/595 (61%), Gaps = 10/595 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE-PETFLVNIL 115
            A++    M   GV  D+ T++ + K         E +  H   +  GFE  + F+   +
Sbjct: 84  EAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGI 143

Query: 116 LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
           ++M+ KF  +++A+ +FD++ +++VV +T +I  Y    ++ +ALE+   M+   ++PN 
Sbjct: 144 VDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNE 203

Query: 176 FTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           +T ++VL +C +L  L   + +H  ++K G ES V  +++L+ +Y+K   + ++  VFN 
Sbjct: 204 YTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNS 263

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           +     V W S I G  QN   + AL++++ M R   + +  T +S+L AC+ LA+LE G
Sbjct: 264 LAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAG 323

Query: 293 TQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
            Q+H   +K   D +  ++ AL+ +Y KCG++E A SVF  + + DV+S +TMI   AQN
Sbjct: 324 EQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQN 383

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
           G+  EAL+LFE MK    KPN +T + +L AC++AG VE+G   F  ++  + I+  R+H
Sbjct: 384 GFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDH 443

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
           Y+CMIDLLGRA + +EA  LI E    PD + WR LL ACK+H   ++A    KK+L+  
Sbjct: 444 YTCMIDLLGRAKRFEEAAMLIEEGK-NPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQA 502

Query: 471 PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSH 530
           P+D GT+ILL+NIYA++ KWD V E++   R   + K P  SW+++++++H F   D SH
Sbjct: 503 PRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSH 562

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           P+  +I++ L  LI+K++ +GY PDT +VLQDLE E+K  ++ YHSEKLAI F L   T 
Sbjct: 563 PRAHEISEMLHELIEKVITLGYNPDTKFVLQDLEEEKKISALYYHSEKLAIAFALWK-TC 621

Query: 591 GK--TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GK   IRI KNLR+CGDCH++ K  + +  + I+ RD  R+HHF+ G CSC DYW
Sbjct: 622 GKNTAIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDAKRFHHFKGGICSCKDYW 676



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/379 (31%), Positives = 211/379 (55%), Gaps = 9/379 (2%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y  LI     + ++   K +H H+L  G    +F  + L++ ++K S++ EA+ LFD+MP
Sbjct: 4   YTSLIAQFTNKKSLTTLKSLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDEMP 62

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ--- 193
            R++V+W +MIS++       +A+EL   ML EGV P+ +T+SA+ +A   + + R+   
Sbjct: 63  NRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQK 122

Query: 194 LHCGIIKVGFE-SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            H   + +GFE SD FV + ++D+YAK G++++A  VF+ +  +D+V++ ++I G+ Q  
Sbjct: 123 AHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRG 182

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLIL--NN 310
              EAL +++ M  +    ++ TL SVL +C  L  L  G  +H  V+K   + ++    
Sbjct: 183 LDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQT 242

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           +LL MY KC  +ED++ VF+ +     ++W++ I GL QNG  + AL +F  M    I P
Sbjct: 243 SLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISP 302

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           N+ T   +L ACS    +E G     ++    G+D  +   + +I L G+ G +++A + 
Sbjct: 303 NHFTFSSILHACSSLAMLEAG-EQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKA-RS 360

Query: 431 IHEMPYEPDAVTWRALLGA 449
           + E   E D V+   ++ A
Sbjct: 361 VFESLTELDVVSINTMIYA 379


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/544 (41%), Positives = 338/544 (62%), Gaps = 20/544 (3%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           E + F  N++L  +V+   L+ A+ LF++MPER++VSW  M+S Y      D+A E+   
Sbjct: 23  ERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYK 82

Query: 166 M-LREGVRPN--MFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           M L+ G+  N  +  Y    R  D+            K  FES   +   L+     +G 
Sbjct: 83  MPLKNGISWNGLLAAYVQNGRIEDA------------KRLFESK--MDWTLVSWNCLMGG 128

Query: 223 -LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
            +R    +F+ MP RD + W+++I G++QN   +EAL+ +  M+R     ++S+ T  L 
Sbjct: 129 FVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALS 188

Query: 282 ACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
            C+ +A LELG Q+H  ++K  Y     + NALL MYCKCGS+++A   F  +++KDV+S
Sbjct: 189 TCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVS 248

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           W+TMI G A++G+ +EAL +FE MK + I+P+  T+V VL ACSHAG V+ G  +F SM 
Sbjct: 249 WNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMN 308

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
           + YGI     HY+CM+DLLGRAG+L+EA  L+  MP+EPDA TW ALLGA ++H NT+L 
Sbjct: 309 RDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELG 368

Query: 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQ 519
             AA+ I  ++P + G YILLS +YA S +W +  ++R  MR +G+ K PG SW+EV  +
Sbjct: 369 EKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNK 428

Query: 520 IHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKL 579
           IH F V D+SHP  DKI   L+ +  KL   GY   TN V  D+E E+K   ++YHSEKL
Sbjct: 429 IHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKYHSEKL 488

Query: 580 AIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
           A+ +G++ +  G+ IR+ KNLR+C DCH   K  +K+  + I++RD  R+H+F+ G+CSC
Sbjct: 489 AVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGGSCSC 548

Query: 640 GDYW 643
            D+W
Sbjct: 549 RDFW 552



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 21/195 (10%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ    R +  ++   +  C    A+E  + +H  ++  G++   ++ N LL M+ K   
Sbjct: 171 MQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGS 230

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           ++EA+  F ++ E++VVSW TMI  Y      ++AL +   M   G+RP+  T  +VL A
Sbjct: 231 IDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAA 290

Query: 185 CDSLIILRQLHCGIIKVGFE------------SDVFVRSALIDIYAKLGELRNAECVFNE 232
           C         H G++  G E            + +   + ++D+  + G+L  A+ +   
Sbjct: 291 CS--------HAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKN 342

Query: 233 MPTR-DLVVWNSIIG 246
           MP   D   W +++G
Sbjct: 343 MPFEPDAATWGALLG 357



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 65/138 (47%), Gaps = 10/138 (7%)

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           ++  Y +    + A  +F +M ++D+ SW+ M++G  +N   + A  LFE M    I   
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDI--- 57

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            ++   +L   +  GFV++    F  M    GI      ++ ++    + G++++A +L 
Sbjct: 58  -VSWNAMLSGYAQNGFVDEAREIFYKMPLKNGIS-----WNGLLAAYVQNGRIEDAKRLF 111

Query: 432 HEMPYEPDAVTWRALLGA 449
            E   +   V+W  L+G 
Sbjct: 112 -ESKMDWTLVSWNCLMGG 128


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/516 (43%), Positives = 320/516 (62%), Gaps = 8/516 (1%)

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ- 193
           MP  + VSWT +I+AY DA    +A+ +       G+RP+ FT   VL AC  +  L   
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 194 ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
                    + G    VFV +A +D+Y K GE+  A  VF+EM  RD V W +++GG+A 
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYAS 120

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL---I 307
           N    EAL+L+  M+  G   D  T+   L ACT L  L+LG Q  V ++ +D  L   +
Sbjct: 121 NGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQA-VGMVHWDEVLGNPV 179

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           L  AL+DMY KCGS  +A  VF +M+++D+I W+ MI GL   G+ + A  L   MK S 
Sbjct: 180 LGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSG 239

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           +K N  T +G+L +C+H G V DG  +F +M   Y I P  EHY CM+DL  RAG L+EA
Sbjct: 240 VKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEA 299

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487
            +LI +MP   +AV W ALLG CK+HRN DLA  A K+++ L+P + G Y++LSNIY+NS
Sbjct: 300 HQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNS 359

Query: 488 QKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL 547
            +W++ A++R  M+A+GI K P  SW+E++ ++H F V D SHP  DKI   L  L  ++
Sbjct: 360 GRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELGMEM 419

Query: 548 VGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCH 607
             +GY P T  V+ D+E E+KE+++ +HSEK+AI F L++   G+TIR+ KNLR+C DCH
Sbjct: 420 KAMGYEPTTEVVMFDVENEEKENTLVHHSEKIAIAFSLITTEPGETIRVTKNLRVCTDCH 479

Query: 608 TFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +  KL +++  + IV+RD  R+H F+DG+CSC DYW
Sbjct: 480 SAIKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 165/356 (46%), Gaps = 32/356 (8%)

Query: 59  MKAMHAMQCHGV---------RADSVTYAELIKCCLARHAVEEAKLVHNHVL-SGGFEPE 108
           M A HA++  GV         R DS T   ++  C     +E  + V        G    
Sbjct: 17  MDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETGEAVWAAARQEEGVAES 76

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F+    L+++VK   +E+A+ +FD+M  R+ V+W  M+  Y       +AL+L   M  
Sbjct: 77  VFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQM 136

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFE---SDVFVRSALIDIYAKLGELRN 225
           EG +P+ +T    L AC  L  L      +  V ++    +  + +ALID+YAK G    
Sbjct: 137 EGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSE 196

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VF +M  RD++VWN++I G         A  L  +MK++G   + +T   +L +CT 
Sbjct: 197 AWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTH 256

Query: 286 LALLELGTQVH---VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWS 341
             L+  G Q      HV +    +     ++D++ + G LE+A  +   M +  + + W 
Sbjct: 257 TGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWG 316

Query: 342 TMISG--LAQNG-YSQEALKLFESMKVSRIKP----NYITIVGVLFACSHAGFVED 390
            ++ G  + +N   ++ ALK     ++ R++P    NY+ +  +    S++G  ED
Sbjct: 317 ALLGGCKIHRNADLAEHALK-----QLIRLEPWNSGNYVMLSNIY---SNSGRWED 364


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/558 (40%), Positives = 330/558 (59%), Gaps = 7/558 (1%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
            K VH   +  G   + F+     +M+ K  L EEA+ +FD+MPERN+ +W   +S    
Sbjct: 127 GKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVL 186

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFV 209
               D AL   I    EG  PN+ T+ A L AC     L + RQLH  +++ GFE+DV V
Sbjct: 187 EGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSV 246

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
            + LID Y K  ++  +E +F+ +   + V W S+I  + QN + ++A  ++ R ++ G 
Sbjct: 247 ANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGI 306

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMS 327
                 ++SVL AC GL++LE+G  VH   +K     ++ + +AL+DMY KCGS+EDA  
Sbjct: 307 EPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAER 366

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS--RIKPNYITIVGVLFACSHA 385
            F  M ++++++W+ MI G A  G +  A+ LF+ M     R+ PNY+T V VL ACS A
Sbjct: 367 AFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRA 426

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G V  G   F+SM+  YGI+PG EHY+C++DLLGRAG +++A + I +MP  P    W A
Sbjct: 427 GSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGA 486

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LLGA K+   ++L   AA  +  LDP D G ++LLSN++A + +W+E   VRK M+  GI
Sbjct: 487 LLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGI 546

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            K  GCSWI     +H F   D+SH +  +I   L  L  ++   GY PDT++ L DLE 
Sbjct: 547 KKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEE 606

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           E+K   + YHSEK+A+ FGL+S+  G  IRI KNLRICGDCH+  K  + +  + I++RD
Sbjct: 607 EEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRD 666

Query: 626 PIRYHHFQDGNCSCGDYW 643
              +H F+D  CSC DYW
Sbjct: 667 NNLFHRFRDNQCSCRDYW 684



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 216/452 (47%), Gaps = 28/452 (6%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEP-ETFLVNILLNMHVKFSLLEEAQVLFDQ 134
           + A L++  ++       +  H  ++     P  +F+ N L+NM+ K      AQ+L   
Sbjct: 8   SLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSL 67

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IIL 191
            P R+VV+WT +I+          AL     M R+ ++PN FT+    +A  SL   ++ 
Sbjct: 68  TPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVG 127

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           +Q+H   +K G  SDVFV  +  D+Y+K G    A  +F+EMP R++  WN+ +      
Sbjct: 128 KQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLE 187

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILN 309
              D+AL  +   +  G+  +  T  + L AC G + L LG Q+H  VL+  ++ D+ + 
Sbjct: 188 GRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVA 247

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
           N L+D Y KC  +  +  +FS + + + +SW +MI    QN   ++A  +F   +   I+
Sbjct: 248 NGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIE 307

Query: 370 PNYITIVGVLFACSHAGFVEDGWN-HFKSMKK------FYGIDPGREHYSCMIDLLGRAG 422
           P    +  VL AC+    +E G + H  ++K       F G        S ++D+ G+ G
Sbjct: 308 PTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVG--------SALVDMYGKCG 359

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
            +++A +   EMP E + VTW A++G        D+A+    ++     +    Y+    
Sbjct: 360 SIEDAERAFDEMP-ERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVC 418

Query: 483 IYANSQKWDEV---AEVRKTMRAR-GITKEPG 510
           + +   +   V    E+ ++MR R GI  EPG
Sbjct: 419 VLSACSRAGSVNVGMEIFESMRGRYGI--EPG 448



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 153/317 (48%), Gaps = 13/317 (4%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+ A    +  G   + +T+   +  C     +   + +H  VL  GFE +  + N L++
Sbjct: 193 ALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLID 252

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            + K   +  ++++F  + + N VSW +MI +Y      +KA  + +   +EG+ P  F 
Sbjct: 253 FYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFM 312

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            S+VL AC  L +L   + +H   +K     ++FV SAL+D+Y K G + +AE  F+EMP
Sbjct: 313 VSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMP 372

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG--FAADQSTLTSVLRACTGLALLELG 292
            R+LV WN++IGG+A     D A+ L+  M       A +  T   VL AC+    + +G
Sbjct: 373 ERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVG 432

Query: 293 TQVHVHVL-KYDHDLILNN--ALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLA 348
            ++   +  +Y  +    +   ++D+  + G +E A     +M I+  V  W  ++    
Sbjct: 433 MEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASK 492

Query: 349 QNGYSQ----EALKLFE 361
             G S+     A  LFE
Sbjct: 493 MFGKSELGKVAADNLFE 509


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/602 (37%), Positives = 368/602 (61%), Gaps = 8/602 (1%)

Query: 50  CYQRD--LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY  +     ++K +  M+  G   ++ T+   +K  +   A + AK VH  +L   +  
Sbjct: 221 CYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVL 280

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           +  +   LL ++ +   + +A  +F++MP+ +VV W+ MI+ +C     ++A++L I M 
Sbjct: 281 DPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMR 340

Query: 168 REGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
              V PN FT S++L  C       +  QLH  ++KVGF+ D++V +ALID+YAK  ++ 
Sbjct: 341 EAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMD 400

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
            A  +F E+ +++ V WN++I G+    +  +A ++++   R   +  + T +S L AC 
Sbjct: 401 TAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACA 460

Query: 285 GLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            LA ++LG QVH   +K ++   + ++N+L+DMY KCG ++ A SVF+ M   DV SW+ 
Sbjct: 461 SLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNA 520

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           +ISG + +G  ++AL++ + MK    KPN +T +GVL  CS+AG ++ G   F+SM + +
Sbjct: 521 LISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDH 580

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           GI+P  EHY+CM+ LLGR+G+L +A+KLI  +PYEP  + WRA+L A     N + A  +
Sbjct: 581 GIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRS 640

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A++IL ++P+D  TY+L+SN+YA +++W  VA +RK+M+  G+ KEPG SWIE    +H 
Sbjct: 641 AEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHY 700

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F+V  S HP +  IN  L+ L  K    GY PD N VL D++ E+K+  +  HSE+LA+ 
Sbjct: 701 FSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALA 760

Query: 583 FGLMSLTQGKT-IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641
           +GL+ +   +  I I KNLRIC DCH+  K+ + +  + +VIRD  R+HHF  G CSCGD
Sbjct: 761 YGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGD 820

Query: 642 YW 643
           +W
Sbjct: 821 HW 822



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/380 (31%), Positives = 194/380 (51%), Gaps = 11/380 (2%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           DS  Y  +++ C+ ++    AK +H  +L  G   + F  NILLN +VK    ++A  LF
Sbjct: 48  DSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLF 107

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG--VRPNMFT-YSAVLRACDSLI 189
           D+MPERN VS+ T+   Y         + L   + REG  + P++FT +  +  + D   
Sbjct: 108 DEMPERNNVSFVTLAQGYA----CQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAE 163

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           I   LH  I+K+G++S+ FV +ALI+ Y+  G + +A  VF  +  +D+VVW  I+  + 
Sbjct: 164 ICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYV 223

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           +N   +++L L   M+ AGF  +  T  + L+A  GL   +    VH  +LK  Y  D  
Sbjct: 224 ENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPR 283

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           +   LL +Y + G + DA  VF+ M + DV+ WS MI+   QNG+  EA+ LF  M+ + 
Sbjct: 284 VGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAF 343

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           + PN  T+  +L  C+  G           +    G D      + +ID+  +  K+  A
Sbjct: 344 VVPNEFTLSSILNGCA-IGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTA 402

Query: 428 VKLIHEMPYEPDAVTWRALL 447
           VKL  E+    + V+W  ++
Sbjct: 403 VKLFAELS-SKNEVSWNTVI 421



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 154/332 (46%), Gaps = 11/332 (3%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
            RFC       A+     M+   V  +  T + ++  C         + +H  V+  GF+
Sbjct: 321 ARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFD 380

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
            + ++ N L++++ K   ++ A  LF ++  +N VSW T+I  Y +     KA  +    
Sbjct: 381 LDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREA 440

Query: 167 LREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
           LR  V     T+S+ L AC SL  +    Q+H   IK      V V ++LID+YAK G++
Sbjct: 441 LRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDI 500

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           + A+ VFNEM T D+  WN++I G++ +    +AL +   MK      +  T   VL  C
Sbjct: 501 KFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGC 560

Query: 284 TGLALLELGTQVHVHVLKYDHD----LILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVI 338
           +   L++ G +    +++ DH     L     ++ +  + G L+ AM +   +  +  V+
Sbjct: 561 SNAGLIDQGQECFESMIR-DHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVM 619

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
            W  M+S  A    + E      + ++ +I P
Sbjct: 620 IWRAMLS--ASMNQNNEEFARRSAEEILKINP 649


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/611 (36%), Positives = 361/611 (59%), Gaps = 10/611 (1%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++L+  ++R    R   +  + M +    G++ D++T++  +  C     + + + +   
Sbjct: 129 NALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEAR 188

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
            ++ G+  ++ + N L+NM+ K   LE A+ +FD++  R+V++W TMIS Y       +A
Sbjct: 189 TVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQA 248

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDI 216
           LEL   M     +PN+ T+  +L AC +L  L Q   +H  + + G+ESD+ + + L+++
Sbjct: 249 LELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNM 308

Query: 217 YAKLGE-LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           Y K    L  A  VF  M TRD++ WN +I  + Q     +AL+++K+M+    A ++ T
Sbjct: 309 YTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEIT 368

Query: 276 LTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
           L++VL AC  L     G  VH  +   +   D++L N+L++MY +CGSL+D + VF+ + 
Sbjct: 369 LSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIR 428

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393
            K ++SWST+I+  AQ+G+S+  L+ F  +    +  + +T+V  L ACSH G +++G  
Sbjct: 429 DKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQ 488

Query: 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            F SM   +G+ P   H+ CM+DLL RAG+L+ A  LIH+MP+ PDAV W +LL  CK+H
Sbjct: 489 TFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLH 548

Query: 454 RNTDLAICAAKKILNLDPQDP-GTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCS 512
            +T  A   A K+  L+ +D   T  LLSN+YA + +WD   +VRKT   R   K PGCS
Sbjct: 549 NDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWD---DVRKTRNRRAARKNPGCS 605

Query: 513 WIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSI 572
           +IE+N  +H F   D SHP+ + I   +K L +++   GY PD   VL +++ E+KE  +
Sbjct: 606 YIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQML 665

Query: 573 QYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF 632
            YHSEKLAI +GL+S   G  + I KNLR C DCH  AK  +++  + IV+RD  R+HHF
Sbjct: 666 CYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHF 725

Query: 633 QDGNCSCGDYW 643
           ++G+CSC DYW
Sbjct: 726 ENGSCSCKDYW 736



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 128/423 (30%), Positives = 220/423 (52%), Gaps = 25/423 (5%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105
           F R  + R+   A+     M   G+R D   +   I  C +   +++ +L+H  +L    
Sbjct: 33  FARNGHYRE---ALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETRL 89

Query: 106 -EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
            E +  L   L+ M+ +   LE A+  FD+M ++ +V+W  +I+ Y     +  AL++  
Sbjct: 90  LEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQ 149

Query: 165 FMLR---EGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYA 218
            M+    EG++P+  T+S+ L AC  +  +   R++    +  G+ SD  V++ALI++Y+
Sbjct: 150 DMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYS 209

Query: 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278
           K G L +A  VF+ +  RD++ WN++I G+A+     +AL L++RM       +  T   
Sbjct: 210 KCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIG 269

Query: 279 VLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKC-GSLEDAMSVFSRMIQK 335
           +L ACT L  LE G  +H  V +  Y+ DL++ N LL+MY KC  SLE+A  VF RM  +
Sbjct: 270 LLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTR 329

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
           DVI+W+ +I    Q G +++AL +F+ M++  + PN IT+  VL AC+  G    G    
Sbjct: 330 DVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQG---- 385

Query: 396 KSMKKFYGIDPGREHY-----SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           K++     I  GR        + ++++  R G L + V +   +  +   V+W  L+ A 
Sbjct: 386 KAVHAL--IASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAI-RDKSLVSWSTLIAAY 442

Query: 451 KVH 453
             H
Sbjct: 443 AQH 445



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 182/341 (53%), Gaps = 10/341 (2%)

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   + +A  +F  +   N VSWT +++A+       +AL     M+ EG+RP+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 178 YSAVLRACDSLIILRQ---LHCGIIKVGF-ESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           +   +  C S   L+Q   LH  I++    E D+ + +ALI +YA+  +L  A   F+EM
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRM---KRAGFAADQSTLTSVLRACTGLALLE 290
             + LV WN++I G+++N D   AL +Y+ M      G   D  T +S L ACT +  + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G ++    +   Y  D I+ NAL++MY KCGSLE A  VF R+  +DVI+W+TMISG A
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           + G + +AL+LF+ M  +  KPN +T +G+L AC++   +E G    + +++  G +   
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRE-DGYESDL 299

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
              + ++++  +     E  + + E     D +TW  L+ A
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVA 340



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 143/301 (47%), Gaps = 19/301 (6%)

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           +Y K G + +A  VF+ +   + V W  I+  FA+N    EAL  Y+RM   G   D + 
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 276 LTSVLRACTGLALLELGTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
               +  C+    L+ G  +H  +L+    + D+IL  AL+ MY +C  LE A   F  M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR----IKPNYITIVGVLFACSHAGFV 388
            +K +++W+ +I+G ++NG  + ALK+++ M VS+    +KP+ IT    L+AC+  G +
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDM-VSKSPEGMKPDAITFSSALYACTVVGDI 179

Query: 389 EDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
             G     +++   Y  D   ++   +I++  + G L+ A K+   +    D + W  ++
Sbjct: 180 SQGREIEARTVASGYASDSIVQN--ALINMYSKCGSLESARKVFDRLK-NRDVIAWNTMI 236

Query: 448 GACKVHRNTDLAICAAKKILNLDPQDPG----TYILLSNIYANSQKWDEVAEVRKTMRAR 503
                +     A  A +    + P DP     T+I L     N +  ++   + + +R  
Sbjct: 237 SG---YAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRED 293

Query: 504 G 504
           G
Sbjct: 294 G 294


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/590 (38%), Positives = 353/590 (59%), Gaps = 39/590 (6%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
           AK +H  ++  G          L++ + K  LL++A  LFD +P+++ V+W T++SA   
Sbjct: 27  AKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNL 86

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL-----IILRQLHCGIIKVGFESDV 207
           + +  KA  + + +L EG++P+ F +S++++AC +L      + +QLH   +   F  D 
Sbjct: 87  SNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDD 146

Query: 208 FVRSALIDIYAKL-------------------------------GELRNAECVFNEMPTR 236
            V+S+L+D+YAK                                G    A  +F E P +
Sbjct: 147 VVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFK 206

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLRACTGLALLELGTQV 295
           +L  W ++I G  Q+ + ++AL L+  M+R G + AD   L+SV+ AC   A+ ELG QV
Sbjct: 207 NLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQV 266

Query: 296 H--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H  V  L Y+  L ++NAL+DMY KC  +  A  +F  M +KDV+SW+++I G AQ+G +
Sbjct: 267 HCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLA 326

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
           +EAL L++ M ++ +KPN +T VG+++ACSH G V  G   FKSM + +GI P  +HY+C
Sbjct: 327 EEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTC 386

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           ++DL  R+G L EA  LI  MP +PD  TW ALL ACK H NT +A+  A  +L+L P+D
Sbjct: 387 LLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPED 446

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQI 533
           P +YILLSNIYA +  W+ V+ VRK M  + + K PG S +++ ++   F+  ++S P  
Sbjct: 447 PSSYILLSNIYAGAGMWENVSMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMK 506

Query: 534 DKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT 593
           D+I   +  L  ++   GY PDT+ VL D++ ++KE  + +HSE+LA+ +GL+    G T
Sbjct: 507 DEILGLMTKLDSEMRRRGYVPDTSSVLLDMDQQEKERQLFWHSERLALAYGLLKAVPGTT 566

Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           IRI KNLR+CGDCHT  KL + + ++ I +RD  RYHHF+DG CSC D+W
Sbjct: 567 IRIVKNLRVCGDCHTVLKLISAITSREIYVRDVKRYHHFKDGKCSCNDFW 616



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 172/352 (48%), Gaps = 42/352 (11%)

Query: 50  CYQRDLPRAMKAMHAMQCH-GVRADSVTYAELIKCC--LARHAVEEAKLVHNHVLSGGFE 106
           C   +LP    ++     H G++ D   ++ LIK C  L    V+  K +H   L   F 
Sbjct: 84  CNLSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFF 143

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALE----- 161
            +  + + L++M+ KF L +  + +FD + E + +SWT MIS Y  +    +ALE     
Sbjct: 144 EDDVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRES 203

Query: 162 --------------------------LLIFMLREGVR-PNMFTYSAVLRACDSLIIL--- 191
                                     L + M REGV   +    S+V+ AC +  +    
Sbjct: 204 PFKNLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELG 263

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           +Q+HC +I +G+ES +F+ +AL+D+YAK  ++  A+ +F EM  +D+V W SII G AQ+
Sbjct: 264 KQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQH 323

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH---VHVLKYDHDLIL 308
              +EAL LY  M  AG   ++ T   ++ AC+ + L+  G  +    V        L  
Sbjct: 324 GLAEEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQH 383

Query: 309 NNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKL 359
              LLD++ + G L++A ++   M ++ D  +W+ ++S    +G ++ A+++
Sbjct: 384 YTCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRI 435



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 4/176 (2%)

Query: 189 IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
            I ++LH  IIK G          LID Y K G L++A  +F+ +P +D V W +++   
Sbjct: 25  FIAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSAC 84

Query: 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL--LELGTQVHVHVL--KYDH 304
             ++   +A ++   +   G   D    +S+++AC  L    ++LG Q+H   L   +  
Sbjct: 85  NLSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFE 144

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
           D ++ ++L+DMY K    +   +VF  + +   ISW+ MISG A++G   EAL+LF
Sbjct: 145 DDVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELF 200



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 39/206 (18%)

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
           +  ++H  ++K   +H       L+D Y KCG L+DA+ +F  + Q+D ++W+T++S   
Sbjct: 26  IAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACN 85

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG------------------FVED 390
            +    +A  +   +    ++P++     ++ AC++ G                  F ED
Sbjct: 86  LSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFED 145

Query: 391 GWNHFKS-----MKKFYGIDPGRE-----------HYSCMIDLLGRAGKLQEAVKLIHEM 434
             +  KS       KF   D GR             ++ MI    R+G+  EA++L  E 
Sbjct: 146 --DVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRES 203

Query: 435 PYEPDAVTWRALLGACKVHRNTDLAI 460
           P++ +   W AL+       N + A+
Sbjct: 204 PFK-NLYAWTALISGLVQSGNANDAL 228


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/668 (35%), Positives = 380/668 (56%), Gaps = 43/668 (6%)

Query: 14  PSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD 73
           P+     +++++   +   N +  N+      F       D   A+K    M   G+  +
Sbjct: 48  PNFDGLPYAISVFETIQEPNLLIWNTM-----FRGHALSSDPVSAIKLYVCMISLGLLPN 102

Query: 74  SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK------------ 121
           S T+  L+K C      +E + +H HVL  G+E + ++   L++M+VK            
Sbjct: 103 SYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFD 162

Query: 122 -------------------FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALEL 162
                                 +E AQ +FD++P ++VVSW  +IS Y D   N +AL+L
Sbjct: 163 GSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDL 222

Query: 163 LIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
              M++  V+P+  T   V+ AC    S+ + RQ+H  I   G  S++ + +ALID+Y+K
Sbjct: 223 FKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSK 282

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
            GE+  A  +F  +  +D++ WN++IGG+   +   EAL L++ M R+G   +  T+ S+
Sbjct: 283 CGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSI 342

Query: 280 LRACTGLALLELGTQVHVHVLKYDHDLI----LNNALLDMYCKCGSLEDAMSVFSRMIQK 335
           L AC  L  ++ G  +HV++ K    +     L  +L+DMY KCG +E A  VF+ M  +
Sbjct: 343 LPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHR 402

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
            + + + MI G A +G +  A  +F  M+ + I+P+ IT VG+L ACSH+G ++ G   F
Sbjct: 403 TLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIF 462

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN 455
           +SM + Y I P  EHY CMIDLLG  G  +EA ++I+ M  EPD V W +LL ACK+H N
Sbjct: 463 RSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGN 522

Query: 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE 515
            +L    A+K++ ++P++PG+Y+LLSNIYA + +W+EVA +R  +  +G+ K PGCS IE
Sbjct: 523 VELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIE 582

Query: 516 VNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYH 575
           ++  +H F + D  HP+  +I   L+ +   L   G+ PDT+ VLQ++E E K+ ++++H
Sbjct: 583 IDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEFKQGALRHH 642

Query: 576 SEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDG 635
           SEKLAI FGL+S   G  + I KNLR+C +CH   KL +K+  + I+ RD  R+HHF+DG
Sbjct: 643 SEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDG 702

Query: 636 NCSCGDYW 643
            CSC DYW
Sbjct: 703 VCSCNDYW 710



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 212/447 (47%), Gaps = 78/447 (17%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHV---KFSLLEEAQVLFDQMPERNVVSWTT 145
            ++  +++H  ++  G     + ++ LL   +    F  L  A  +F+ + E N++ W T
Sbjct: 14  TLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNT 73

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVG 202
           M   +  +     A++L + M+  G+ PN +T+  +L++C  L + +   Q+H  ++K+G
Sbjct: 74  MFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLG 133

Query: 203 FESDVFVRSALIDIYAKLGELRNAECV-------------------------------FN 231
           +E D++V ++LI +Y K G  ++A  V                               F+
Sbjct: 134 YELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFD 193

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           E+P +D+V WN+II G+A   +  EAL+L+K M +     D+ST+ +V+ AC     ++L
Sbjct: 194 EIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQL 253

Query: 292 GTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
           G QVH  +   DH L  N    NAL+D+Y KCG +E A  +F  +  KDVISW+TMI G 
Sbjct: 254 GRQVHSWI--DDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGY 311

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDP 406
                 +EAL LF+ M  S   PN +T++ +L AC+  G ++ G W H    K+  G+  
Sbjct: 312 THLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTN 371

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPY------------------------------ 436
                + +ID+  + G ++ A ++ + M +                              
Sbjct: 372 ASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMR 431

Query: 437 ----EPDAVTWRALLGACKVHRNTDLA 459
               EPD +T+  LL AC      DL 
Sbjct: 432 KNGIEPDDITFVGLLSACSHSGMLDLG 458



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 147/306 (48%), Gaps = 38/306 (12%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALID---IYAKLGELRNAECVFNEMPTR 236
           ++L  C +L  LR +H  +IK G  +  +  S L++   +      L  A  VF  +   
Sbjct: 7   SLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEP 66

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           +L++WN++  G A +SD   A+ LY  M   G   +  T   +L++C  L + + G Q+H
Sbjct: 67  NLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIH 126

Query: 297 VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY-- 352
            HVLK  Y+ DL ++ +L+ MY K G  +DA  VF     +DV+S++ +I+G A  GY  
Sbjct: 127 GHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIE 186

Query: 353 -----------------------------SQEALKLFESMKVSRIKPNYITIVGVLFACS 383
                                        ++EAL LF+ M  + +KP+  T+V V+ AC+
Sbjct: 187 SAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACA 246

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
            +G ++ G     S    +G+    +  + +IDL  + G+++ A  L   +    D ++W
Sbjct: 247 QSGSIQLG-RQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLS-NKDVISW 304

Query: 444 RALLGA 449
             ++G 
Sbjct: 305 NTMIGG 310


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 267/741 (36%), Positives = 386/741 (52%), Gaps = 110/741 (14%)

Query: 2   ILKAVSKLKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLP-RAMK 60
           +LK  ++L +   +   + FS    P    CNT+ +              QR+ P +A+ 
Sbjct: 64  LLKFSTELPFININQSYQIFSHIENPNGFICNTMMKGY-----------MQRNSPCKAIW 112

Query: 61  AMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMH- 119
               M    V AD+ TY  L + C  R A  + K + +HVL  GF+ + ++ N L+NM+ 
Sbjct: 113 VYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYA 172

Query: 120 ------------------------------VKFSLLEEAQVLFDQMPERNV--------- 140
                                         V    +EEA+ ++D+MPERNV         
Sbjct: 173 VCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVL 232

Query: 141 ----------------------VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTY 178
                                 VSW+ +IS Y   +M ++AL L   M   G+  +    
Sbjct: 233 FGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVV 292

Query: 179 SAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYA----------------- 218
            +VL AC  L+++   + +H  ++KVG E+ V +++ALI +Y+                 
Sbjct: 293 LSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCC 352

Query: 219 --------------KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
                         K GE+  A  +F+ MP +D V W+++I G+AQ     E L L++ M
Sbjct: 353 LDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEM 412

Query: 265 KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSL 322
           +  G   D++ L SV+ ACT LA L+ G  +H ++ K     ++IL   L++MY K G +
Sbjct: 413 QIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCV 472

Query: 323 EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
           EDA+ VF  + +K V +W+ +I GLA NG   ++LK F  MK   + PN IT V VL AC
Sbjct: 473 EDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGAC 532

Query: 383 SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
            H G V++G  HF SM + + I P  +HY CM+DLLGRAG L+EA +LI  MP  PD  T
Sbjct: 533 RHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVST 592

Query: 443 WRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502
           W ALLGACK + + +      +K++ L P   G  +LLSNIYA+   W +V EVR  MR 
Sbjct: 593 WGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQ 652

Query: 503 RGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQD 562
            G+ K PGCS IE + ++H F   D +HPQ + I   L  + +KL   GYAPDT  V  D
Sbjct: 653 HGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLD 712

Query: 563 LEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIV 622
           ++ E+KE ++  HSEKLAI FGL+++     IRI KNLRIC DCHT AKL +K  N+ IV
Sbjct: 713 IDEEEKETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCHTAAKLISKAFNREIV 772

Query: 623 IRDPIRYHHFQDGNCSCGDYW 643
           +RD  R+HHF+ G+CSC DYW
Sbjct: 773 VRDRHRFHHFKQGSCSCMDYW 793



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 193/435 (44%), Gaps = 94/435 (21%)

Query: 98  NHVLS----GGFEPETFLVNILLNM--HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
           N +LS     GF  ++F  + LL     + F  + ++  +F  +   N     TM+  Y 
Sbjct: 43  NQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNGFICNTMMKGYM 102

Query: 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHC---GIIKVGFESDVF 208
                 KA+ +  FML   V  + +TY  + ++C   +      C    ++KVGF+SDV+
Sbjct: 103 QRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVY 162

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           +++ LI++YA  G L +A  VF+     D+V WNS++ G+    +V+EA ++Y RM    
Sbjct: 163 IQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMP--- 219

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSV 328
                                             + ++I +N+++ ++ K G++E+A  +
Sbjct: 220 ----------------------------------ERNVIASNSMIVLFGKKGNVEEACKL 245

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           F+ M QKD++SWS +IS   QN   +EAL LF+ M  + I  + + ++ VL ACS    V
Sbjct: 246 FNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVV 305

Query: 389 EDGWNHFKSMKKFYG--IDPGREHY--------------------------SCMIDLLG- 419
             G       K  +G  +  G E Y                          SC +D +  
Sbjct: 306 ITG-------KLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISW 358

Query: 420 --------RAGKLQEAVKLIHEMPYEPDAVTWRALL-GACKVHRNTDLAICAAKKILNLD 470
                   + G++++A  L   MP + D V+W A++ G  +  R T+  +   +  + ++
Sbjct: 359 NSMISGYVKCGEIEKARALFDSMP-DKDNVSWSAMISGYAQQDRFTETLVLFQE--MQIE 415

Query: 471 PQDPGTYILLSNIYA 485
              P   IL+S I A
Sbjct: 416 GTKPDETILVSVISA 430



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 124/271 (45%), Gaps = 47/271 (17%)

Query: 182 LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLG--ELRNAECVFNEMPTRDLV 239
           L+ C ++    Q+   +I  GF  D F  S L+    +L    +  +  +F+ +   +  
Sbjct: 33  LQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNGF 92

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL-GTQVHVH 298
           + N+++ G+ Q +   +A+ +YK M  +  AAD  T   + ++C+ + L E  G  +  H
Sbjct: 93  ICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCS-IRLAEFDGKCIQDH 151

Query: 299 VLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           VLK  +D D+ + N L++MY  CG+L DA  VF      D++SW++M++G    G  +EA
Sbjct: 152 VLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEA 211

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
             +++ M      P    I                                    + MI 
Sbjct: 212 KDVYDRM------PERNVIAS----------------------------------NSMIV 231

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           L G+ G ++EA KL +EM  + D V+W AL+
Sbjct: 232 LFGKKGNVEEACKLFNEMK-QKDLVSWSALI 261


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/615 (36%), Positives = 358/615 (58%), Gaps = 29/615 (4%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL-SGGFEPETFLVNILL 116
           A++ ++ M   GVR D +T+A  +  C     +   + +H +VL        +F+ + L+
Sbjct: 255 AIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALV 314

Query: 117 NMHVKFSLLEEAQVLFDQMP--ERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRP 173
           +M+     +  A+ +FD +P   R +  W  M+  Y  A M+++ALEL   M  E GV P
Sbjct: 315 DMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVP 374

Query: 174 NMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +  T + VL AC   ++      +H  ++K G   + FV++AL+D+YA+LG++  A  +F
Sbjct: 375 SETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIF 434

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST--------------- 275
             +  RD+V WN++I G      + +A  L + M++ G   D +T               
Sbjct: 435 AAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPN 494

Query: 276 ---LTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFS 330
              L ++L  C  LA    G ++H + +++  D D+ + +AL+DMY KCG L  + +VF 
Sbjct: 495 NVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFD 554

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS-RIKPNYITIVGVLFACSHAGFVE 389
           R+ +++VI+W+ +I     +G   EA+ LF+ M +S   KPN +T +  L ACSH+G V+
Sbjct: 555 RLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVD 614

Query: 390 DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLG 448
            G   F SMK+ +G+ P  + ++C +D+LGRAG+L EA  +I  M P E     W + LG
Sbjct: 615 RGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLG 674

Query: 449 ACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
           AC++HRN  L   AA+++  L+P +   Y+LL NIY+ +  W++ +EVR  MR RG++KE
Sbjct: 675 ACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKE 734

Query: 509 PGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQK 568
           PGCSWIE++  IH F   +S+HP+   ++ H+  L +++   GY PDT+ VL D+E  +K
Sbjct: 735 PGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLHDIEESEK 794

Query: 569 EDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIR 628
              ++YHSEKLAI FGL+    G TIR+ KNLR+C DCH  AK  ++M  + IV+RD  R
Sbjct: 795 AAILRYHSEKLAIAFGLLRTPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRR 854

Query: 629 YHHFQDGNCSCGDYW 643
           +HHF DG CSCGDYW
Sbjct: 855 FHHFVDGACSCGDYW 869



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 185/369 (50%), Gaps = 25/369 (6%)

Query: 104 GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL 163
           GF P   + N LL  + +   L  A  LF+ MP R+ V++ ++I+A C  +    AL+ L
Sbjct: 93  GFTPA--VANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDAL 150

Query: 164 IFMLREGVRPNMFTYSAVLRAC----DSLIILRQLHCGIIKVGF--ESDVFVRSALIDIY 217
             ML EG   + FT  +VL AC    + L + R+ H   +K GF    + F  +AL+ +Y
Sbjct: 151 RDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMY 210

Query: 218 AKLGELRNAECVFNEMPTRD-----LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           A+LG + +A+ +F  + T D     +V WN+++    Q+    EA+ +   M   G   D
Sbjct: 211 ARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPD 270

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSV 328
             T  S L AC+ L +L LG ++H +VLK D DL  N    +AL+DMY     +  A  V
Sbjct: 271 GITFASALPACSQLEMLSLGREMHAYVLK-DSDLAANSFVASALVDMYASHERVGVARRV 329

Query: 329 FSRMI--QKDVISWSTMISGLAQNGYSQEALKLFESMKV-SRIKPNYITIVGVLFACSHA 385
           F  +    + +  W+ M+ G AQ G  +EAL+LF  M+  + + P+  TI GVL AC+ +
Sbjct: 330 FDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARS 389

Query: 386 -GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
             F      H   +K+    +P  +  + ++DL  R G + EA + I       D V+W 
Sbjct: 390 ETFAGKEAVHGYVLKRGMADNPFVQ--NALMDLYARLGDM-EAARWIFAAIEPRDVVSWN 446

Query: 445 ALLGACKVH 453
            L+  C V 
Sbjct: 447 TLITGCVVQ 455


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/548 (41%), Positives = 343/548 (62%), Gaps = 22/548 (4%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           E +   V  ++  + +   L+EA+ LFD+MP+RNVV+WT M+S Y      D A +L   
Sbjct: 176 EKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEV 235

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVG---FES----DVFVRSALIDIYA 218
           M       N  +++A+L        L   H G ++     F++     V V + +I  + 
Sbjct: 236 MPER----NEVSWTAML--------LGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFG 283

Query: 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278
             GE+  A  VF  M  RD   W+++I  + +     EAL L++RM+R G A +  +L S
Sbjct: 284 LNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLIS 343

Query: 279 VLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD 336
           VL  C  LA L+ G QVH  +++  +D DL + + L+ MY KCG+L  A  VF+R   KD
Sbjct: 344 VLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKD 403

Query: 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
           V+ W++MI+G +Q+G  +EAL +F  M  S + P+ +T +GVL ACS++G V++G   F+
Sbjct: 404 VVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFE 463

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
           +MK  Y ++PG EHY+C++DLLGRA ++ EA+KL+ +MP EPDA+ W ALLGAC+ H   
Sbjct: 464 TMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKL 523

Query: 457 DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEV 516
           DLA  A +K+  L+P++ G Y+LLSN+YA   +W +V  +R+ ++AR +TK PGCSWIEV
Sbjct: 524 DLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEV 583

Query: 517 NKQIHAFNVADS-SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYH 575
            K++H F   DS  HP+   I K L+ L   L   GY PD ++VL D++ E+K  S+ YH
Sbjct: 584 EKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHDVDEEEKTHSLGYH 643

Query: 576 SEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDG 635
           SEKLA+ +GL+ + +G  IR+ KNLR+CGDCH+  KL AK+  + I++RD  R+HHF+DG
Sbjct: 644 SEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDG 703

Query: 636 NCSCGDYW 643
           +CSC DYW
Sbjct: 704 HCSCKDYW 711



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 188/407 (46%), Gaps = 31/407 (7%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N L++ H+K  +L EA+ +FD MP+RNVVSWT+M+  Y       +A  L   M  + V 
Sbjct: 90  NGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVV 149

Query: 173 PNMFTYSAVL---RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
                   +L   R  D+  +   +         E DV   + +I  Y + G L  A  +
Sbjct: 150 SWTVMLGGLLQEGRVDDARKLFDMMP--------EKDVVAVTNMIGGYCEEGRLDEARAL 201

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F+EMP R++V W +++ G+A+N  VD A  L++ M       ++ + T++L   T    +
Sbjct: 202 FDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPE----RNEVSWTAMLLGYTHSGRM 257

Query: 290 ELGTQVHVHVLKYD----HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
              + +      +D      +++ N ++  +   G ++ A  VF  M ++D  +WS MI 
Sbjct: 258 REASSL------FDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIK 311

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGI 404
              + GY  EAL LF  M+   +  N+ +++ VL  C     ++ G   H + ++  +  
Sbjct: 312 VYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEF-- 369

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAK 464
           D      S +I +  + G L  A ++ +  P + D V W +++     H   + A+    
Sbjct: 370 DQDLYVASVLITMYVKCGNLVRAKQVFNRFPLK-DVVMWNSMITGYSQHGLGEEALNVFH 428

Query: 465 KILNLD-PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
            + +   P D  T+I + +  + S K  E  E+ +TM+ +    EPG
Sbjct: 429 DMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCK-YQVEPG 474



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 147/327 (44%), Gaps = 58/327 (17%)

Query: 125 LEEAQVLFDQ--MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
           L+ A+ +FD+  +P R V SW  M++AY +A+   +AL L   M      P   T S   
Sbjct: 38  LDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKM------PQRNTVSW-- 89

Query: 183 RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
                                       + LI  + K G L  A  VF+ MP R++V W 
Sbjct: 90  ----------------------------NGLISGHIKNGMLSEARRVFDTMPDRNVVSWT 121

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY 302
           S++ G+ +N DV EA  L+  M      +    L  +L+         +     +  +  
Sbjct: 122 SMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEG------RVDDARKLFDMMP 175

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           + D++    ++  YC+ G L++A ++F  M +++V++W+ M+SG A+NG    A KLFE 
Sbjct: 176 EKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEV 235

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC--MIDLLGR 420
           M     + N ++   +L   +H+G + +  + F +M       P +    C  MI   G 
Sbjct: 236 MP----ERNEVSWTAMLLGYTHSGRMREASSLFDAM-------PVKPVVVCNEMIMGFGL 284

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALL 447
            G++ +A ++   M  E D  TW A++
Sbjct: 285 NGEVDKARRVFKGMK-ERDNGTWSAMI 310



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 111/226 (49%), Gaps = 14/226 (6%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           S+++  + R  Y+ +   A+     MQ  G+  +  +   ++  C++  +++  K VH  
Sbjct: 307 SAMIKVYERKGYELE---ALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQ 363

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           ++   F+ + ++ ++L+ M+VK   L  A+ +F++ P ++VV W +MI+ Y    + ++A
Sbjct: 364 LVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEA 423

Query: 160 LELLIFMLREGVRPNMFTYSAVLRAC-------DSLIILRQLHCGIIKVGFESDVFVRSA 212
           L +   M   GV P+  T+  VL AC       + L +   + C   K   E  +   + 
Sbjct: 424 LNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKC---KYQVEPGIEHYAC 480

Query: 213 LIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
           L+D+  +  ++  A  +  +MP   D +VW +++G    +  +D A
Sbjct: 481 LVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLA 526



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 114/239 (47%), Gaps = 18/239 (7%)

Query: 211 SALIDIYAKLGELRNAECVFNE--MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           S  I  YA+ G+L +A  VF+E  +P R +  WN+++  + +     EAL L+++M +  
Sbjct: 26  SYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRN 85

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSV 328
             +    ++  ++   G+    L     V     D +++   +++  Y + G + +A  +
Sbjct: 86  TVSWNGLISGHIK--NGM----LSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERL 139

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           F  M  K+V+SW+ M+ GL Q G   +A KLF+ M     + + + +  ++      G +
Sbjct: 140 FWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMP----EKDVVAVTNMIGGYCEEGRL 195

Query: 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           ++    F  M K   +      ++ M+    R GK+  A KL   MP E + V+W A+L
Sbjct: 196 DEARALFDEMPKRNVVT-----WTAMVSGYARNGKVDVARKLFEVMP-ERNEVSWTAML 248



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 130/323 (40%), Gaps = 59/323 (18%)

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
           NA++  Y +     +A+ +F +M Q++ +SW+ +ISG  +NG   EA ++F++M    + 
Sbjct: 59  NAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVV 118

Query: 370 PNYITIVG----------------------VLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
                + G                      V +     G +++G       +K + + P 
Sbjct: 119 SWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEG--RVDDARKLFDMMPE 176

Query: 408 REHYSC--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
           ++  +   MI      G+L EA  L  EMP + + VTW A++     +   D+    A+K
Sbjct: 177 KDVVAVTNMIGGYCEEGRLDEARALFDEMP-KRNVVTWTAMVSGYARNGKVDV----ARK 231

Query: 466 ILNLDPQD---PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           +  + P+      T +LL   Y +S +  E + +   M  + +        +  N+ I  
Sbjct: 232 LFEVMPERNEVSWTAMLLG--YTHSGRMREASSLFDAMPVKPV--------VVCNEMIMG 281

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F +    + ++DK  +  K + ++  G   A    Y  +  E E      +   E LA+ 
Sbjct: 282 FGL----NGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALN 337

Query: 583 F-----------GLMSLTQGKTI 594
           F            L SL  GK +
Sbjct: 338 FPSLISVLSVCVSLASLDHGKQV 360


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/592 (38%), Positives = 354/592 (59%), Gaps = 7/592 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           RA++ +  MQ  G + DSVT   ++       A+   + +H +    GFE    + N LL
Sbjct: 229 RALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALL 288

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K      A+++F  M  + VVSW TMI        +++A    + ML EG  P   
Sbjct: 289 DMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRV 348

Query: 177 TYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T   VL AC +L  L +   +H  + K+  +S+V V ++LI +Y+K   +  A  +FN +
Sbjct: 349 TMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNL 408

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
              + V WN++I G+AQN  V EALNL+  M+  G   D  TL  V+ A    ++     
Sbjct: 409 EKTN-VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAK 467

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
            +H   ++   D+++ ++ AL+DMY KCG+++ A  +F  M ++ VI+W+ MI G   +G
Sbjct: 468 WIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHG 527

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
             +E L LF  M+   +KPN IT + V+ ACSH+GFVE+G   FKSM++ Y ++P  +HY
Sbjct: 528 VGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHY 587

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           S M+DLLGRAG+L +A   I EMP +P      A+LGACK+H+N +L   AA+K+  LDP
Sbjct: 588 SAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDP 647

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
            + G ++LL+NIYA++  WD+VA+VR  M  +G+ K PGCSW+E+  +IH F    ++HP
Sbjct: 648 DEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHP 707

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
           +  KI   L+ L  ++   GY PD + +  D+E + K+  +  HSE+LAI FGL++ + G
Sbjct: 708 ESKKIYAFLETLGDEIKAAGYVPDPDSI-HDVEEDVKKQLLSSHSERLAIAFGLLNTSPG 766

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            T+ IRKNLR+CGDCH   K  + +  + I++RD  R+HHF++G+CSCGDYW
Sbjct: 767 TTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCSCGDYW 818



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/353 (32%), Positives = 184/353 (52%), Gaps = 8/353 (2%)

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           ++  GF  E      ++++  KF    EA  +F+ +  +  V +  M+  Y        A
Sbjct: 70  IIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDA 129

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDI 216
           L   + M+ + VR  +  Y+ +L+ C   + L   R++H  II  GFES++FV +A++ +
Sbjct: 130 LCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSL 189

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           YAK  ++ NA  +F  M  +DLV W +++ G+AQN     AL L  +M+ AG   D  TL
Sbjct: 190 YAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTL 249

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQ 334
            S+L A   +  L +G  +H +  +   + ++N  NALLDMY KCGS   A  VF  M  
Sbjct: 250 VSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRS 309

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
           K V+SW+TMI G AQNG S+EA   F  M      P  +T++GVL AC++ G +E GW  
Sbjct: 310 KTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFV 369

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
            K + K   +D      + +I +  +  ++  A  + + +  E   VTW A++
Sbjct: 370 HKLLDKL-KLDSNVSVMNSLISMYSKCKRVDIAASIFNNL--EKTNVTWNAMI 419


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/599 (37%), Positives = 352/599 (58%), Gaps = 52/599 (8%)

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVL--FDQMPERNVVSWTTMISA 149
           + K VH H++  G    ++++  L+ M  K  +   +  L  F Q+   N   WT MI  
Sbjct: 57  QIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRG 116

Query: 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVG-FES 205
           Y    +  ++      M R+GV P  FT+SA+ +AC + + +   +Q+H   I +G F S
Sbjct: 117 YALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFAS 176

Query: 206 DVFVRSALIDIY-------------------------------AKLGELRNAECVFNEMP 234
           D++V +++ID+Y                               AK G++ +A  +F+++P
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLP 236

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
           ++D+V W +++ G+AQN    EAL  +++M+  G   D+ TL  V+ AC      +LG  
Sbjct: 237 SKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACA-----QLGAV 291

Query: 295 VHVHVLK---------YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
            H + ++            ++++ +AL+DMY KCGS ++A  VF  M +++V S+S+MI 
Sbjct: 292 KHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMIL 351

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           G A +G +  AL+LF  M  + I+PN +T +G+L ACSHAG VE G   F  M+KF+G+ 
Sbjct: 352 GYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVA 411

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
           P  +HY+CM+DLLGRAG L+EA+ L+  MP EP+   W ALLGAC++H N D+A  AA +
Sbjct: 412 PSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANE 471

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE-VNKQIHAFN 524
           +  L+P   G YILLSNIYA++ +W+EV+++RK +R +G  K PGCSW E  N +IH F 
Sbjct: 472 LFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFF 531

Query: 525 VADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFG 584
             D++HP+  +I + LK LI++L   GY P+      DL  ++KE  +  HSEKLA+ +G
Sbjct: 532 AGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYG 591

Query: 585 LMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L+    G TI+I KN+RIC DCH      +++  + I++RD +R+HHF +G CSCG++W
Sbjct: 592 LLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/601 (37%), Positives = 357/601 (59%), Gaps = 38/601 (6%)

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
           ++ C    +    K +H H++  G +    L N L+NM+ K  L+++A  LF+Q+P R+ 
Sbjct: 10  LQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDP 69

Query: 141 VSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNMFTYSAVLRACDSLIILRQ---LHC 196
           +SW ++++A   A +    L +   M ++ G++P+ + ++ +++AC  L  ++Q   +H 
Sbjct: 70  ISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHA 129

Query: 197 GIIKVGFESDVFVRSALIDIYAKLG-------------------------------ELRN 225
             I      D  V+S+L+D+YAK G                                  +
Sbjct: 130 TFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLD 189

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF-AADQSTLTSVLRACT 284
           A  +F +MP ++L+ W ++I G  Q+ +  ++  L+  M+  G    D   L+S++ A  
Sbjct: 190 AIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASA 249

Query: 285 GLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            LA+L LG Q+H  V +L Y+  L ++NAL+DMY KC  +  A  +F RM+Q+D++SW++
Sbjct: 250 NLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTS 309

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           +I G AQ+G ++EAL L+  M  + +KPN +T VG+++ACSH G V  G   F SM K Y
Sbjct: 310 IIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDY 369

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           GI+P  +HY+C++DLL R+G L+EA  LI  MP++PD  TW ALL AC  HRNT + I  
Sbjct: 370 GINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRV 429

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A  +L+L P+DP TYILLSNIYA++  W+ V++VR+ M A  + KEPG S I + K+   
Sbjct: 430 ADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQV 489

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F   ++SHP  ++I   L+ L  ++   GY PDT+ VL DLE ++KE  + +HSE+LA+ 
Sbjct: 490 FLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHSERLAVA 549

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           +GL+    G  + I KNLR+CGDCHT  K  + +  + IV+RD  RYHHF+DG CSC ++
Sbjct: 550 YGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKCSCNNF 609

Query: 643 W 643
           W
Sbjct: 610 W 610



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 164/336 (48%), Gaps = 41/336 (12%)

Query: 52  QRDLPRAMKAMHA--MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPET 109
           Q +LP    +M     +  G++ D   +A L+K C    A+++ K VH   +      + 
Sbjct: 81  QANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDD 140

Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALE-------- 161
            + + L++M+ K  L +  +V+FD +  +N +SWT MIS Y  +     A++        
Sbjct: 141 VVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVK 200

Query: 162 -----------------------LLIFMLREGVR-PNMFTYSAVLRACDSLIIL---RQL 194
                                  L + M  +G+   + F  S+++ A  +L +L   +Q+
Sbjct: 201 NLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQI 260

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
           HC +I +G+ES +FV +AL+D+YAK  ++  A+ +F  M  RD+V W SII G AQ+   
Sbjct: 261 HCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLA 320

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHDLILNNA 311
           +EAL+LY RM   G   ++ T   ++ AC+ + L+  G      ++K    +  L     
Sbjct: 321 EEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTC 380

Query: 312 LLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
           LLD+  + G LE+A ++   M  + D  +W+ ++S 
Sbjct: 381 LLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSA 416



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 119/239 (49%), Gaps = 16/239 (6%)

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNALLDMYCKCGSLEDAMSVFSR 331
           S L   L+AC       +G ++H H++K   D    L+N L++MY KCG ++DA+++F++
Sbjct: 4   SHLVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQ 63

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVED 390
           +  +D ISW+++++   Q       L +F +M K   ++P++     ++ AC+  G ++ 
Sbjct: 64  LPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQ 123

Query: 391 GWNHFKSMKKFYGIDPGREH---YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           G    K +   + + P  +     S ++D+  + G L +  +++ +     ++++W A++
Sbjct: 124 G----KQVHATFIVSPVSDDDVVKSSLVDMYAKCG-LPDIGRVVFDSISSKNSISWTAMI 178

Query: 448 -GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
            G  +  R  D    A +    +  ++  ++  L +    S  W +   +   MR++GI
Sbjct: 179 SGYAQSGRKLD----AIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGI 233


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/658 (36%), Positives = 370/658 (56%), Gaps = 71/658 (10%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++ M  M   G+     T   ++    A   +E  K VH+ ++  G      + N LL
Sbjct: 129 KAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLL 188

Query: 117 NM-------------------------------HVKFSLLEEAQVLFDQMPERNVVSWTT 145
           NM                               H++   ++ A   F+QM ER++V+W +
Sbjct: 189 NMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNS 248

Query: 146 MISAYCDAKMNDKALELLIFMLREGV-RPNMFTYSAVLRAC---DSLIILRQLHCGIIKV 201
           MIS +     + +AL++   MLR+ +  P+ FT ++VL AC   + L I +Q+H  I+  
Sbjct: 249 MISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTT 308

Query: 202 GFESDVFVRSALIDIYA---------------------------------KLGELRNAEC 228
           GF+    V +ALI +Y+                                 KLG++  A+ 
Sbjct: 309 GFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKN 368

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           +F  +  RD+V W ++I G+ Q+    EA+NL++ M   G   +  TL ++L   + LA 
Sbjct: 369 IFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLAS 428

Query: 289 LELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMIS 345
           L  G Q+H   +K    + + ++NAL+ MY K G++  A   F  +  ++D +SW++MI 
Sbjct: 429 LSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMII 488

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
            LAQ+G+++EAL+LFE+M +  ++P++IT VGV  AC+HAG V  G  +F  MK    I 
Sbjct: 489 ALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKII 548

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
           P   HY+CM+DL GRAG LQEA + I +MP EPD VTW +LL AC+VH+N DL   AA++
Sbjct: 549 PTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAER 608

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
           +L L+P++ G Y  L+N+Y+   KW+E A++RK+M+   + KE G SWIEV  ++H F V
Sbjct: 609 LLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGV 668

Query: 526 ADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGL 585
            D +HP+ ++I   +K +  ++  +GY PDT  VL DLE E KE  +++HSEKLAI FGL
Sbjct: 669 EDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGL 728

Query: 586 MSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +S     T+RI KNLR+C DCHT  K  +K+  + I++RD  R+HHF+DG CSC DYW
Sbjct: 729 ISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 128/476 (26%), Positives = 211/476 (44%), Gaps = 116/476 (24%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP---------------- 136
           A+LVH  V+  G     +L+N L+N++ K      A+ LFD+MP                
Sbjct: 33  AQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSK 92

Query: 137 ---------------ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
                          +R+ VSWTTMI  Y +     KA+ ++  M++EG+ P  FT + V
Sbjct: 93  RGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNV 152

Query: 182 LRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN------- 231
           L +  +   +   +++H  I+K+G   +V V ++L+++YAK G+   A+ VF+       
Sbjct: 153 LASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDI 212

Query: 232 ------------------------EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
                                   +M  RD+V WNS+I GF Q      AL+++ +M R 
Sbjct: 213 SSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRD 272

Query: 268 G-FAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLE- 323
              + D+ TL SVL AC  L  L +G Q+H H++    D+  I+ NAL+ MY +CG +E 
Sbjct: 273 SLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVET 332

Query: 324 --------------------------------DAMSVFSRMIQKDVISWSTMISGLAQNG 351
                                            A ++F  +  +DV++W+ MI G  Q+G
Sbjct: 333 ARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHG 392

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG--IDPGRE 409
              EA+ LF SM     +PN  T+  +L   S    +  G       K+ +G  +  G E
Sbjct: 393 SYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHG-------KQIHGSAVKSG-E 444

Query: 410 HYS-----CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            YS      +I +  +AG +  A +    +  E D V+W +++ A   H + + A+
Sbjct: 445 IYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEAL 500



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 177/417 (42%), Gaps = 110/417 (26%)

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
           LEL   +L++ V  +   ++A L           +HC +IK G    V++ + L+++Y+K
Sbjct: 13  LELCTNLLQKSVNKSNGRFTAQL-----------VHCRVIKSGLMFSVYLMNNLMNVYSK 61

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD------------------------ 255
            G   +A  +F+EMP R    WN+++  +++  D+D                        
Sbjct: 62  TGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGY 121

Query: 256 -------EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDL 306
                  +A+ +   M + G    Q TLT+VL +      +E G +VH  ++K     ++
Sbjct: 122 KNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNV 181

Query: 307 ILNNALLDMYCKC-------------------------------GSLEDAMSVFSRMIQK 335
            ++N+LL+MY KC                               G ++ AM+ F +M ++
Sbjct: 182 SVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAER 241

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESM-KVSRIKPNYITIVGVLFACS----------- 383
           D+++W++MISG  Q GY   AL +F  M + S + P+  T+  VL AC+           
Sbjct: 242 DIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQI 301

Query: 384 HAGFVEDGW-------NHFKSM-KKFYGIDPGR-------------EHYSCMIDLLGRAG 422
           H+  V  G+       N   SM  +  G++  R             E ++ ++D   + G
Sbjct: 302 HSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLG 361

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
            + +A  +   +  + D V W A++   + H +   AI   + ++    Q P +Y L
Sbjct: 362 DMNQAKNIFVSLK-DRDVVAWTAMIVGYEQHGSYGEAINLFRSMVG-GGQRPNSYTL 416


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/642 (38%), Positives = 367/642 (57%), Gaps = 24/642 (3%)

Query: 12  TKPSSQARQFSLT-----ITP-PVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAM 65
           T PSS+ R  +L      + P P+AS  + T + S++         + DL  A +A  + 
Sbjct: 35  TPPSSRHRLLALRYPSRLLAPTPLASARSHTCSLSTVA--VAAAVRRGDLTGAEEAFAST 92

Query: 66  QCHGVRADSVTYAELIKCCLARHAVEEAKLVH-NHVLSGGFEPETFLVNILLNMHVKFSL 124
                R  + TY     C LA +A    +L    H+      P+    N LL+ H     
Sbjct: 93  P----RKTTATY----NCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGD 144

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            + A+ LF  MP R+VVSW TM+S    +   ++A  + + M    VR N  +++A++  
Sbjct: 145 ADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAM---PVR-NSVSWNAMVSG 200

Query: 185 CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
                 +            + D  + +A++  Y  +G +  A   F  MP R+LV WN++
Sbjct: 201 FACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAV 260

Query: 245 IGGFAQNSDVDEALNLYKRMKR-AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY- 302
           + G+ +NS  D+AL L++ M R A    + STL+SVL  C+ L+ L  G Q+H   +K  
Sbjct: 261 VAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLP 320

Query: 303 -DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
              +L +  +L+ MYCKCG L  A  +F  M  +DV++W+ MISG AQ+G  +EA+ LFE
Sbjct: 321 LSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFE 380

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            MK   ++PN+IT V VL AC H G  + G   F+ M++ YGI+P  +HYSCM+DLL RA
Sbjct: 381 RMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRA 440

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           GKL+ AV LI  MP+EP    +  LL AC+V++N + A  AA K++  DPQ  G Y+ L+
Sbjct: 441 GKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLA 500

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
           NIYA + +WD+V+ VR+ M+   + K PG SWIE+   +H F   D  HPQ+  I++ L 
Sbjct: 501 NIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLG 560

Query: 542 HLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
            L +++  +GY PD ++VL D++   K   +  HSEKLAI FGL+S   G T+RI KNLR
Sbjct: 561 QLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLR 620

Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +CGDCH  AK+ +K+E++ I++RD  R+HHF+ G+CSCGDYW
Sbjct: 621 VCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 662


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/558 (38%), Positives = 342/558 (61%), Gaps = 7/558 (1%)

Query: 93  AKLVHNHVLSGG--FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
            K +H +V+  G   +    L   L++M+VK   L  A+ +FD + + +++SWT MI+AY
Sbjct: 244 GKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAY 303

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDV 207
                 ++ + L + ML EG+ PN  T  ++++ C +   L + + LH   ++ GF   +
Sbjct: 304 IHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSL 363

Query: 208 FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
            + +A ID+Y K G++R+A  VF+   ++DL++W+++I  +AQN+ +DEA +++  M   
Sbjct: 364 VLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGC 423

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDA 325
           G   ++ T+ S+L  C     LE+G  +H ++ K     D+IL  + +DMY  CG ++ A
Sbjct: 424 GIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTA 483

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F+    +D+  W+ MISG A +G+ + AL+LFE M+   + PN IT +G L ACSH+
Sbjct: 484 HRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHS 543

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G +++G   F  M   +G  P  EHY CM+DLLGRAG L EA +LI  MP  P+   + +
Sbjct: 544 GLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGS 603

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
            L ACK+H+N  L   AAK+ L+L+P   G  +L+SNIYA++ +W +VA +R+ M+  GI
Sbjct: 604 FLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGI 663

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            KEPG S IEVN  +H F + D  HP   K+ + +  + +KL   GY PD + VL +++ 
Sbjct: 664 VKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEMREKLEDAGYTPDVSCVLHNIDK 723

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           E+K  ++ YHSEKLA+ +GL+S   G  IRI KNLR+C DCH   KL +K+  + I++RD
Sbjct: 724 EKKVSALNYHSEKLAMAYGLISTAPGVPIRIVKNLRVCDDCHNATKLLSKIYGREIIVRD 783

Query: 626 PIRYHHFQDGNCSCGDYW 643
             R+HHF++G+CSC DYW
Sbjct: 784 RNRFHHFKEGSCSCCDYW 801



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/456 (28%), Positives = 225/456 (49%), Gaps = 13/456 (2%)

Query: 28  PVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLAR 87
           P+A+  + + N++      T +        A K    M+      D+     ++K C   
Sbjct: 78  PLAALESYSSNAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLI 137

Query: 88  HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMI 147
            +    + VH  V+  GF  + F+ N L+ M+ +   L  A++LFD++  ++VVSW+TMI
Sbjct: 138 PSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMI 197

Query: 148 SAYCDAKMNDKALELLIFMLREGVRPN---MFTYSAVLRACDSLIILRQLHCGIIKVG-- 202
            +Y  + + D+AL+LL  M    V+P+   M + + VL     L + + +H  +++ G  
Sbjct: 198 RSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKC 257

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
            +S V + +ALID+Y K   L  A  VF+ +    ++ W ++I  +   ++++E + L+ 
Sbjct: 258 GKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFV 317

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCG 320
           +M   G   ++ T+ S+++ C     LELG  +H   L+  +   L+L  A +DMY KCG
Sbjct: 318 KMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCG 377

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
            +  A SVF     KD++ WS MIS  AQN    EA  +F  M    I+PN  T+V +L 
Sbjct: 378 DVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLM 437

Query: 381 ACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD 439
            C+ AG +E G W H    K+  GI       +  +D+    G +  A +L  E   + D
Sbjct: 438 ICAKAGSLEMGKWIHSYIDKQ--GIKGDMILKTSFVDMYANCGDIDTAHRLFAEAT-DRD 494

Query: 440 AVTWRALLGACKVHRNTDLAICAAKKI--LNLDPQD 473
              W A++    +H + + A+   +++  L + P D
Sbjct: 495 ISMWNAMISGFAMHGHGEAALELFEEMEALGVTPND 530


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/629 (37%), Positives = 361/629 (57%), Gaps = 12/629 (1%)

Query: 24  TITPPVASCNTITRNSSSLLDDFTR-FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIK 82
           TI   ++  N I +  SS  +   R   ++R    A+     M    V+ D  T++ ++K
Sbjct: 70  TIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLK 129

Query: 83  CCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVS 142
            C    A+ E + VH  +L  GF+   F+ N L+ M+     +  A+ +FD MPER++V+
Sbjct: 130 ACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVA 189

Query: 143 WTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCG----- 197
           W +M+S Y    + D+ ++L   +L   +  +  T  +VL AC  L     L  G     
Sbjct: 190 WNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLA---NLEIGELIGE 246

Query: 198 -IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
            I+  G   +  + ++LID+YAK G++  A  +F+EM  RD+V W+++I G+AQ     E
Sbjct: 247 YIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKE 306

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNALLD 314
           ALNL+  M++     ++ T+ SVL +C  L   E G  VH ++ K    L   L   L+D
Sbjct: 307 ALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLID 366

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
            Y KCG ++ ++ VF  M  K+V +W+ +I GLA NG  + AL+ F SM  + +KPN +T
Sbjct: 367 FYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVT 426

Query: 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
            +GVL ACSHA  V+ G + F SM++ + I+P  EHY CM+D+LGRAG L+EA + I  M
Sbjct: 427 FIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNM 486

Query: 435 PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494
           P+ P+AV WR LL +C+ H+N ++A  + + I  L+P   G YILLSN YA   + ++  
Sbjct: 487 PFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAI 546

Query: 495 EVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAP 554
            VR  ++ + I K PGCS IE++  +H F   D  H    +I+  L  +++++  +GY P
Sbjct: 547 RVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYVP 606

Query: 555 DTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTA 614
           +T+    + E E KE S+ +HSEKLAI +GL+  +   TIRI KNLR+C DCH   K  +
Sbjct: 607 NTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLRMCRDCHNATKFIS 666

Query: 615 KMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           ++  + I++RD  R+HHF+DG CSC DYW
Sbjct: 667 QVFERMIIVRDRNRFHHFKDGLCSCNDYW 695


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/611 (36%), Positives = 361/611 (59%), Gaps = 10/611 (1%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++L+  ++R    R   +  + M +    G++ D++T++  +  C     + + + +   
Sbjct: 129 NALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEAR 188

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
            ++ G+  ++ + N L+NM+ K   LE A+ +FD++  R+V++W TMIS Y       +A
Sbjct: 189 TVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQA 248

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDI 216
           LEL   M     +PN+ T+  +L AC +L  L Q   +H  + + G+ESD+ + + L+++
Sbjct: 249 LELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNM 308

Query: 217 YAKLGE-LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           Y K    L  A  VF  + TRD++ WN +I  + Q     +AL+++K+M+    A ++ T
Sbjct: 309 YTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEIT 368

Query: 276 LTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
           L++VL AC  L     G  VH  +   +   D++L N+L++MY +CGSL+D + VF+ + 
Sbjct: 369 LSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIR 428

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393
            K ++SWST+I+  AQ+G+S+  L+ F  +    +  + +T+V  L ACSH G +++G  
Sbjct: 429 DKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQ 488

Query: 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            F SM   +G+ P   H+ CM+DLL RAG+L+ A  LIH+MP+ PDAV W +LL  CK+H
Sbjct: 489 SFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLH 548

Query: 454 RNTDLAICAAKKILNLDPQDP-GTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCS 512
            +T  A   A K+  L+ +D   T  LLSN+YA + +WD   +VRKT   R   K PGCS
Sbjct: 549 NDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWD---DVRKTRNRRAARKNPGCS 605

Query: 513 WIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSI 572
           +IE+N  +H F   D SHP+ + I   +K L +++   GY PD   VL +++ E+KE  +
Sbjct: 606 YIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQML 665

Query: 573 QYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF 632
            YHSEKLAI +GL+S   G  + I KNLR C DCH  AK  +++  + IV+RD  R+HHF
Sbjct: 666 CYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHF 725

Query: 633 QDGNCSCGDYW 643
           ++G+CSC DYW
Sbjct: 726 ENGSCSCKDYW 736



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 127/423 (30%), Positives = 220/423 (52%), Gaps = 25/423 (5%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105
           F R  + R+   A+     M   G+R D   +   I  C +   +++ +L+H  +L    
Sbjct: 33  FARNGHYRE---ALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETQL 89

Query: 106 -EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
            E +  L   L+ M+ +   LE A+  FD+M ++ +V+W  +I+ Y     +  AL++  
Sbjct: 90  LEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQ 149

Query: 165 FMLR---EGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYA 218
            M+    EG++P+  T+S+ L AC  +  +   R++    +  G+ SD  V++ALI++Y+
Sbjct: 150 DMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYS 209

Query: 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278
           K G L +A  VF+ +  RD++ WN++I G+A+     +AL L++RM       +  T   
Sbjct: 210 KCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIG 269

Query: 279 VLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKC-GSLEDAMSVFSRMIQK 335
           +L ACT L  LE G  +H  V +  Y+ DL++ N LL+MY KC  SLE+A  VF R+  +
Sbjct: 270 LLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTR 329

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
           DVI+W+ +I    Q G +++AL +F+ M++  + PN IT+  VL AC+  G    G    
Sbjct: 330 DVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQG---- 385

Query: 396 KSMKKFYGIDPGREHY-----SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           K++     I  GR        + ++++  R G L + V +   +  +   V+W  L+ A 
Sbjct: 386 KAVHAL--IASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAI-RDKSLVSWSTLIAAY 442

Query: 451 KVH 453
             H
Sbjct: 443 AQH 445



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 183/341 (53%), Gaps = 10/341 (2%)

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   + +A  +F  +   N VSWT +++A+       +AL     M+ EG+RP+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 178 YSAVLRACDSLIILRQ---LHCGIIKVGF-ESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           +   +  C S   L+Q   LH  I++    E D+ + +ALI +YA+  +L  A   F+EM
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRM---KRAGFAADQSTLTSVLRACTGLALLE 290
             + LV WN++I G+++N D   AL +Y+ M      G   D  T +S L AC+ +  + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G ++    +   Y  D I+ NAL++MY KCGSLE A  VF R+  +DVI+W+TMISG A
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           + G + +AL+LF+ M  +  KPN +T +G+L AC++   +E G    + +K+ +G +   
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKE-HGYESDL 299

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
              + ++++  +     E  + + E     D +TW  L+ A
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVA 340



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 143/301 (47%), Gaps = 19/301 (6%)

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           +Y K G + +A  VF+ +   + V W  I+  FA+N    EAL  Y+RM   G   D + 
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 276 LTSVLRACTGLALLELGTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
               +  C+    L+ G  +H  +L+    + D+IL  AL+ MY +C  LE A   F  M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR----IKPNYITIVGVLFACSHAGFV 388
            +K +++W+ +I+G ++NG  + ALK+++ M VS+    +KP+ IT    L+ACS  G +
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDM-VSKSPEGMKPDAITFSSALYACSVVGDI 179

Query: 389 EDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
             G     +++   Y  D   +  + +I++  + G L+ A K+   +    D + W  ++
Sbjct: 180 SQGREIEARTVASGYASDSIVQ--NALINMYSKCGSLESARKVFDRLK-NRDVIAWNTMI 236

Query: 448 GACKVHRNTDLAICAAKKILNLDPQDPG----TYILLSNIYANSQKWDEVAEVRKTMRAR 503
                +     A  A +    + P DP     T+I L     N +  ++   + + ++  
Sbjct: 237 SG---YAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEH 293

Query: 504 G 504
           G
Sbjct: 294 G 294


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/592 (39%), Positives = 356/592 (60%), Gaps = 38/592 (6%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNM--HVKFSLLEEAQVLFDQMPERNVVSWTTMI 147
           +EE + +H  +L  G   +    + LL          L  A+ +FD++   N   W TMI
Sbjct: 31  MEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMI 90

Query: 148 SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFE 204
             Y ++K  ++AL L   ML   V  N +T+  +L+AC S+  L   +Q+H  IIK+GF 
Sbjct: 91  RGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFG 150

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD--------- 255
           S+++  ++L+++Y+K G++++A  +F+++  RD V WNS+I G+ +  +++         
Sbjct: 151 SEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHM 210

Query: 256 ----------------------EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
                                 EALNL+ RM+ AG   D   L S L+AC  L +L+ G 
Sbjct: 211 PERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGK 270

Query: 294 QVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
            +H ++ K++   D IL   L+DMY KCG LE+A+ VF +M +K V  W+ MISG A +G
Sbjct: 271 WIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHG 330

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
             +EAL+ F  M+ + ++PN +T  G+L ACSHAG V +    F+SM++ +G  P  EHY
Sbjct: 331 RGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHY 390

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
            CM+DLLGRAG L+EA +LI  MP +P+A  W ALL AC +H N +L     K ++ +DP
Sbjct: 391 GCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDP 450

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
              G YI L++I+A + +W++ A VR+ M+ +G++K PGCS I VN   H F   D SHP
Sbjct: 451 GHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHP 510

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
           QI +I+  L+ ++++L   GY P    +L DLE ++KE +I +HSEKLA+ FGL+S   G
Sbjct: 511 QIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPG 570

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            TIRI KNLR+C DCHT  KL +K+  + I++RD  R+H F+DGNC+CGDYW
Sbjct: 571 MTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 121/457 (26%), Positives = 200/457 (43%), Gaps = 76/457 (16%)

Query: 14  PSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD 73
           P+S +  ++ T+   +   NT   N+         +   ++   A+   H M  H V  +
Sbjct: 63  PNSGSLAYARTVFDRIFRPNTFMWNTM-----IRGYSNSKEPEEALLLYHHMLYHSVPHN 117

Query: 74  SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFD 133
           + T+  L+K C +  A+EE + +H H++  GF  E +  N LLN++ K   ++ A++LFD
Sbjct: 118 AYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFD 177

Query: 134 QMPER-------------------------------NVVSWTTMISAYCDAKMNDKALEL 162
           Q+ +R                               N++SWT+MIS    A    +AL L
Sbjct: 178 QVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNL 237

Query: 163 LIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAK 219
              M   G++ +     + L+AC  L +L Q   +H  I K   E D  +   LID+YAK
Sbjct: 238 FHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAK 297

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
            G+L  A  VF +M  + + VW ++I G+A +    EAL  + +M+ AG   +Q T T +
Sbjct: 298 CGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGI 357

Query: 280 LRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
           L AC+   L      VH   L ++                 S+E          +  +  
Sbjct: 358 LTACSHAGL------VHEAKLLFE-----------------SMERIHG-----FKPSIEH 389

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           +  M+  L + G  +EA +L E+M V   KPN      +L AC   G +E G    K + 
Sbjct: 390 YGCMVDLLGRAGLLKEAEELIENMPV---KPNAAIWGALLNACHIHGNLELG----KQIG 442

Query: 400 K-FYGIDPGR-EHYSCMIDLLGRAGKLQEAVKLIHEM 434
           K    +DPG    Y  +  +   AG+  +A ++  +M
Sbjct: 443 KILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQM 479



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 41/310 (13%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRDL 238
           +L+ C ++  LRQ+H  ++K G   D    S L+   A    G L  A  VF+ +   + 
Sbjct: 24  LLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNT 83

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
            +WN++I G++ + + +EAL LY  M       +  T   +L+AC+ ++ LE   Q+H H
Sbjct: 84  FMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAH 143

Query: 299 VLK-------YDHDLILN--------------------------NALLDMYCKCGSLEDA 325
           ++K       Y  + +LN                          N+++D Y KCG +E A
Sbjct: 144 IIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMA 203

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F+ M ++++ISW++MISG    G  +EAL LF  M+ + IK + + +V  L AC+  
Sbjct: 204 YEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADL 263

Query: 386 GFVEDG-WNHFKSMKKFYGIDPGREHYSC-MIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
           G ++ G W H    K    IDP      C +ID+  + G L+EA+++  +M  E     W
Sbjct: 264 GVLDQGKWIHAYIKKHEIEIDP---ILGCVLIDMYAKCGDLEEAIEVFRKME-EKGVSVW 319

Query: 444 RALLGACKVH 453
            A++    +H
Sbjct: 320 TAMISGYAIH 329


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/599 (37%), Positives = 351/599 (58%), Gaps = 52/599 (8%)

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVL--FDQMPERNVVSWTTMISA 149
           + K VH H++  G    ++++  L+ M  K  +   +  L  F Q+   N   WT MI  
Sbjct: 57  QIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRG 116

Query: 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVG-FES 205
           Y    +  ++      M R+GV P  FT+SA+ +AC + + +   +Q+H   I +G F S
Sbjct: 117 YALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFAS 176

Query: 206 DVFVRSALIDIY-------------------------------AKLGELRNAECVFNEMP 234
           D++V +++ID+Y                               AK G++ +A  +F+++P
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLP 236

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            +D+V W +++ G+AQN    EAL  +++M+  G   D+ TL  V+ AC      +LG  
Sbjct: 237 LKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACA-----QLGAV 291

Query: 295 VHVHVLK---------YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
            H + ++            ++++ +AL+DMY KCGS ++A  VF  M +++V S+S+MI 
Sbjct: 292 KHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMIL 351

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           G A +G +  AL+LF  M  + I+PN +T +G+L ACSHAG VE G   F  M+KF+G+ 
Sbjct: 352 GYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVA 411

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
           P  +HY+CM+DLLGRAG L+EA+ L+  MP EP+   W ALLGAC++H N D+A  AA +
Sbjct: 412 PSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANE 471

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE-VNKQIHAFN 524
           +  L+P   G YILLSNIYA++ +W+EV+++RK +R +G  K PGCSW E  N +IH F 
Sbjct: 472 LFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFF 531

Query: 525 VADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFG 584
             D++HP+  +I + LK LI++L   GY P+      DL  ++KE  +  HSEKLA+ +G
Sbjct: 532 AGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYG 591

Query: 585 LMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L+    G TI+I KN+RIC DCH      +++  + I++RD +R+HHF +G CSCG++W
Sbjct: 592 LLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/581 (39%), Positives = 348/581 (59%), Gaps = 6/581 (1%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G   DS      +K C      + AKL H+  +    E + ++   L+N++ +   LEEA
Sbjct: 108 GKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEA 167

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
             +F+++P +N V W  MI  + +        EL   M R G   + F    +++AC ++
Sbjct: 168 HKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNV 227

Query: 189 IILRQ---LHCGIIKVGF-ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
              ++    H   IK  F +S+ F++++L+D+Y K G L  A  +F E+  RD+VVW++I
Sbjct: 228 YAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAI 287

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
           I GFA+N    E+++++++M       +  T  S++ AC+ L  L+ G  VH ++++   
Sbjct: 288 IAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGV 347

Query: 305 DLILNN--ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           +L + N  + +DMY KCG +  A  VF ++ +K+V SWSTMI+G   +G   EAL LF  
Sbjct: 348 ELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYE 407

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           M+     PN +T V VL ACSH+G +E+GW+HFKSM + YGI P  EHY+CM+DLLGRAG
Sbjct: 408 MRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAG 467

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
           K+ EA+  I+ MP EP A  W ALLGAC++HR  +LA   AKK+L L+    G Y++LSN
Sbjct: 468 KIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSN 527

Query: 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKH 542
           IYA+   W+ V + R  M  +GI K  G + IE+ ++++ F+  D    +  +I      
Sbjct: 528 IYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKLYLFSSEDRFAYKNTQIESLWNS 587

Query: 543 LIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
           L +++  +GY PD  +VL D++ E K++ +  HSEKLAIVFGL++  +G  IRI KN+R+
Sbjct: 588 LKERMRELGYVPDLRFVLHDVDDEVKQEVLCGHSEKLAIVFGLLNSGEGMPIRITKNMRV 647

Query: 603 CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           CGDCHT +K  + +  + I++RD  R+HH QDG CSCGDYW
Sbjct: 648 CGDCHTASKFISLITRRKIIMRDVKRFHHVQDGVCSCGDYW 688



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 178/346 (51%), Gaps = 8/346 (2%)

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
           ++   +++   L  A   F+ +   N+ SW T+++++   K     L+L   ML+EG   
Sbjct: 52  MIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLV 111

Query: 174 NMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           + F     ++AC  L +    +  H   IK+  E D +V  AL+++Y +LG L  A  VF
Sbjct: 112 DSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVF 171

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
            E+P ++ V+W  +I G    S+      L+ RM+R+GF  D   +  +++AC  +   +
Sbjct: 172 EEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGK 231

Query: 291 LGTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
            G   H   +K    D +  L  +L+DMY KCG L+ A+ +F  +  +DV+ WS +I+G 
Sbjct: 232 EGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGF 291

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
           A+NG + E++ +F  M    + PN +T   ++ ACS  G ++ G +    M +  G++  
Sbjct: 292 ARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIR-NGVELD 350

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            ++Y+  ID+  + G +  A ++  ++P E +  +W  ++    +H
Sbjct: 351 VKNYTSFIDMYAKCGCIVTAYRVFCQIP-EKNVFSWSTMINGFGMH 395



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 127/276 (46%), Gaps = 5/276 (1%)

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           T  ++ R   +L    QL+  I+       +     +   Y +LG L  A   FN +   
Sbjct: 17  TLLSLFRFTKTLASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFE 76

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           +L  WN+I+   ++N    + L L+KRM + G   D   L   ++AC GL+L +     H
Sbjct: 77  NLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFH 136

Query: 297 VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
              +K   + D  +  AL+++Y + GSLE+A  VF  +  K+ + W  MI G        
Sbjct: 137 SLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEF 196

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSC 413
              +LF  M+ S  + +   + G++ AC +    ++G   H   +KK + ID      + 
Sbjct: 197 GVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNF-IDSNFFLQTS 255

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           ++D+  + G L  A+KL  E+ Y  D V W A++  
Sbjct: 256 LVDMYMKCGFLDFALKLFEEISYR-DVVVWSAIIAG 290



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 21/196 (10%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M    V  +SVT+A ++  C +  ++++ + VH +++  G E +       ++M+ K   
Sbjct: 307 MLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGC 366

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +  A  +F Q+PE+NV SW+TMI+ +    +  +AL L   M      PN  T+ +VL A
Sbjct: 367 IVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSA 426

Query: 185 CDSLIILRQLHCGIIKVG---FES---DVFVR------SALIDIYAKLGELRNAECVFNE 232
           C         H G I+ G   F+S   D  +       + ++D+  + G++  A    N 
Sbjct: 427 CS--------HSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINN 478

Query: 233 MPTR-DLVVWNSIIGG 247
           MPT      W +++G 
Sbjct: 479 MPTEPGASAWGALLGA 494


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/627 (37%), Positives = 356/627 (56%), Gaps = 41/627 (6%)

Query: 58  AMKAMHAM--QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNIL 115
            M+A   M  +C     ++   A +++CC     VE  + +H  +L  G  P+  L N +
Sbjct: 108 GMRAFAEMLDECGATAPNAFVLAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAV 167

Query: 116 LNMHVK----------FSLLEE---------------------AQVLFDQMPERNVVSWT 144
           L+M+ K          F  + +                     A  LFD+   R+V SW 
Sbjct: 168 LDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWN 227

Query: 145 TMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKV 201
           T++S         +AL  L  M+R GV  + +TYS V        S  + RQLH  ++  
Sbjct: 228 TIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVA 287

Query: 202 GFESDVFVRSALIDIYAKLGELRNAECVFNEMP--TRDL-VVWNSIIGGFAQNSDVDEAL 258
             E D FV  +L+D+Y K GE+ +A  +F+     T D    W++++ G+ QN   +EAL
Sbjct: 288 VLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEAL 347

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMY 316
             ++RM R G  A Q  LTSV  AC    ++E G QVH  V K  H  D  L +A++DMY
Sbjct: 348 EFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMY 407

Query: 317 CKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIV 376
            K GSLEDA  +F     K+V  W+TM+   A +G  + AL++F  MK  +I PN IT+V
Sbjct: 408 SKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLV 467

Query: 377 GVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY 436
            VL ACSH+G V DG+++F  M++ YGI P  EHY+CM+DL GRAG L +A   I E   
Sbjct: 468 AVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKI 527

Query: 437 EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEV 496
             +AV W+ LL AC++H++ + A  A++K++ L+  D G+Y+L+SN+YA + KW +  ++
Sbjct: 528 SHEAVVWKTLLSACRLHKHIEYAQLASEKLVQLEQYDAGSYVLMSNMYATNNKWLDTFKL 587

Query: 497 RKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDT 556
           R +M+ R + K+PG SWI +   +H F   D+SHP+  +I  +L+ L+++L  +GY   T
Sbjct: 588 RSSMKERRVRKQPGQSWIHLKNVVHRFVALDTSHPRSAEIYAYLEKLMERLKEMGYTSRT 647

Query: 557 NYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKM 616
           + V+ D+E EQ+E S+++HSEKLAI FG++S   G  +RI KNLR+C DCH   K   + 
Sbjct: 648 DLVVHDIEEEQRETSLKFHSEKLAIAFGIISTPVGTALRIFKNLRVCEDCHEAIKFITRA 707

Query: 617 ENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            ++ IV+RD  R+HHF+DG CSC D+W
Sbjct: 708 TDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 173/377 (45%), Gaps = 43/377 (11%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE--GVRPNMFTYSAVL 182
           L  A  +FD  P R++ +WT++IS       +   +     ML E     PN F  + VL
Sbjct: 74  LHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVL 133

Query: 183 RACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKL------------------- 220
           R C  L  +   R++H  I++ G   DV + +A++D+YAK                    
Sbjct: 134 RCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDAT 193

Query: 221 ------------GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
                       G+L  A  +F+E   RD+  WN+I+ G  ++    EAL   ++M RAG
Sbjct: 194 SWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAG 253

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAM 326
                 T + V      L+  +LG Q+H  V V   + D  +  +L+DMYCKCG +E A+
Sbjct: 254 VTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESAL 313

Query: 327 SVFSR---MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
           S+F R     +    +WSTM++G  QNG  +EAL+ F  M    +      +  V  AC+
Sbjct: 314 SIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACA 373

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
           +AG VE G      ++K  G        S ++D+  ++G L++A ++      +  A+ W
Sbjct: 374 NAGMVEQGRQVHGFVEKL-GHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVAL-W 431

Query: 444 RALLGACKVHRNTDLAI 460
             +L +   H    +A+
Sbjct: 432 TTMLCSYASHGQGRMAL 448


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/631 (37%), Positives = 354/631 (56%), Gaps = 52/631 (8%)

Query: 65   MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
            MQ  G   +  T + ++KCC   + ++  K VH  +L  G + +  L N +L++++K  +
Sbjct: 381  MQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKV 440

Query: 125  LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK-------------------------- 158
             E A+ LF+ M E +VVSW  MI AY  A   +K                          
Sbjct: 441  FEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQC 500

Query: 159  -----ALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVR 210
                 ALE L  M+  G   +  T+S  L    SL    + RQLH  ++K GF+SD F+R
Sbjct: 501  GYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIR 560

Query: 211  SALIDIYAKLGELRNAECVFNEMP----------------TRDLVVWNSIIGGFAQNSDV 254
            S+L+++Y K G +  A  +  ++P                   +V W S++ G+  N   
Sbjct: 561  SSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKY 620

Query: 255  DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNAL 312
            ++ L  ++ M R     D  T+T+++ AC    +LE G  VH +V K  H  D  + ++L
Sbjct: 621  EDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSL 680

Query: 313  LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
            +DMY K GSL+DA  VF +  + +++ W++MISG A +G    A+ LFE M    I PN 
Sbjct: 681  IDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNE 740

Query: 373  ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
            +T +GVL ACSHAG +E+G  +F+ MK  Y I+PG EH + M+DL GRAG L +    I 
Sbjct: 741  VTFLGVLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIF 800

Query: 433  EMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
            +         W++ L +C++H+N ++    ++ +L + P DPG Y+LLSN+ A++ +WDE
Sbjct: 801  KNGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDE 860

Query: 493  VAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGY 552
             A VR  M  RG+ K+PG SWI++  QIH F + D SHPQ D+I  +L  LI +L  +GY
Sbjct: 861  AARVRSLMHQRGVKKQPGQSWIQLKDQIHTFVMGDRSHPQDDEIYSYLDILIGRLKEIGY 920

Query: 553  APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
            + D   V+QD+E EQ E  I +HSEKLA+VFG+++      IRI KNLRIC DCH F K 
Sbjct: 921  SFDVKLVMQDVEEEQGEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDCHNFIKY 980

Query: 613  TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             +++ ++ I++RD  R+HHF+ G+CSCGDYW
Sbjct: 981  ASQLLDREIIVRDIHRFHHFKHGSCSCGDYW 1011



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 199/409 (48%), Gaps = 56/409 (13%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N LL ++ K + +  AQ LFD++P+RN  +WT +IS +  A  ++    L   M  +G  
Sbjct: 328 NHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGAC 387

Query: 173 PNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           PN +T S+VL+ C   ++L + + +H  +++ G + DV + ++++D+Y K      AE +
Sbjct: 388 PNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERL 447

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR-------------------------- 263
           F  M   D+V WN +IG + +  DV+++L++++R                          
Sbjct: 448 FELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHAL 507

Query: 264 -----MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMY 316
                M   G      T +  L   + L+ +ELG Q+H  VLK  +D D  + ++L++MY
Sbjct: 508 EQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMY 567

Query: 317 CKCGSLEDAMSVFSRMIQKDV-----------------ISWSTMISGLAQNGYSQEALKL 359
           CKCG ++ A S+  R +  DV                 +SW +M+SG   NG  ++ LK 
Sbjct: 568 CKCGRMDKA-SIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKT 626

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F  M    +  +  T+  ++ AC++AG +E G  H  +  +  G        S +ID+  
Sbjct: 627 FRLMVRELVVVDIRTVTTIISACANAGILEFG-RHVHAYVQKIGHRIDAYVGSSLIDMYS 685

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           ++G L +A  ++     EP+ V W +++    +H     AI   +++LN
Sbjct: 686 KSGSLDDA-WMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLN 733



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 134/280 (47%), Gaps = 34/280 (12%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           L  LH   +K G    +   + L+ +YAK   + +A+ +F+E+P R+   W  +I GFA+
Sbjct: 308 LGTLHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFAR 367

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
               +   NL++ M+  G   +Q TL+SVL+ C+    L+LG  VH  +L+   D D++L
Sbjct: 368 AGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVL 427

Query: 309 NNALLDMYCKC-------------------------------GSLEDAMSVFSRMIQKDV 337
            N++LD+Y KC                               G +E ++ +F R+  KDV
Sbjct: 428 GNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDV 487

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           +SW+T++ GL Q GY + AL+    M     + + +T    L   S    VE G      
Sbjct: 488 VSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELG-RQLHG 546

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           M   +G D      S ++++  + G++ +A  ++ ++P +
Sbjct: 547 MVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLD 586



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 160/330 (48%), Gaps = 28/330 (8%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++D   +  Y+R    A++ ++ M   G    +VT++  +    +   VE  + +H  
Sbjct: 491 NTIVDGLLQCGYER---HALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGM 547

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM----------------PERNVVSW 143
           VL  GF+ + F+ + L+ M+ K   +++A ++   +                P+  +VSW
Sbjct: 548 VLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSW 607

Query: 144 TTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIK 200
            +M+S Y      +  L+    M+RE V  ++ T + ++ AC +  IL   R +H  + K
Sbjct: 608 GSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQK 667

Query: 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNL 260
           +G   D +V S+LID+Y+K G L +A  VF +    ++V+W S+I G+A +     A+ L
Sbjct: 668 IGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGL 727

Query: 261 YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMY 316
           ++ M   G   ++ T   VL AC+   L+E G + +  ++K  + +        +++D+Y
Sbjct: 728 FEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCR-YFRMMKDAYCINPGVEHCTSMVDLY 786

Query: 317 CKCGSLEDAMS-VFSRMIQKDVISWSTMIS 345
            + G L    + +F   I      W + +S
Sbjct: 787 GRAGHLTKTKNFIFKNGISHLTSVWKSFLS 816


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/610 (36%), Positives = 360/610 (59%), Gaps = 9/610 (1%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++LL  +++  + R+   A+     MQ  G R    T+A ++   +    +E  + VH  
Sbjct: 268 NALLTGYSKEGFNRE---AINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGF 324

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           V+   F    F+ N LL+ + K   + EA  LF +MPE + +S+  +++ Y       ++
Sbjct: 325 VVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKES 384

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDI 216
           LEL   +   G     F ++ +L       +L I RQ+H   I     S++ V ++L+D+
Sbjct: 385 LELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDM 444

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           YAK GE   A  +F+++  +  V W ++I  + Q    ++ L L+  M+RA   AD +T 
Sbjct: 445 YAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATY 504

Query: 277 TSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
            S++RAC  LA L LG Q+H H++   Y  ++   +AL+DMY KCGS++DA+ +F  M  
Sbjct: 505 ASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPV 564

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
           ++ +SW+ +IS  AQNG     L+LFE M  S ++P+ ++++ +L ACSH G VE+G  +
Sbjct: 565 RNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQY 624

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR 454
           F SM + Y + P +EHY+  ID+L R G+  EA KL+ +MP+EPD + W ++L +C +H+
Sbjct: 625 FDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHK 684

Query: 455 NTDLAICAAKKILNLDP-QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSW 513
           N +LA  AA ++ N+   +D   Y+ +SNIYA + +WD V +V+K MR RG+ K P  SW
Sbjct: 685 NQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSW 744

Query: 514 IEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQ 573
           +E+  + H F   D +HPQ+ +I K L  L +K+V  GY PD++  L +++ E K +S++
Sbjct: 745 VEIKHKTHVFTANDKTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDEEVKVESLK 804

Query: 574 YHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQ 633
           YHSE++AI F L+S  +G  I + KNLR C DCH   K+ +K+  + I +RD  R+HHF+
Sbjct: 805 YHSERIAIAFALISTPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFR 864

Query: 634 DGNCSCGDYW 643
           DG C+C DYW
Sbjct: 865 DGFCTCRDYW 874



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 204/393 (51%), Gaps = 13/393 (3%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M  HG+  D V+ A L+       +V E + VH+HV+  G++    + N LL+ + K   
Sbjct: 189 MGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRS 248

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L  A  LF+ +PER+ V++  +++ Y     N +A+ L   M   G RP  FT++A+L A
Sbjct: 249 LGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTA 308

Query: 185 ---CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
               D +   +Q+H  ++K  F  +VFV +AL+D Y+K   +  A  +F EMP  D + +
Sbjct: 309 GIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISY 368

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N ++  +A N  V E+L L+K ++  GF        ++L        L++G Q+H   + 
Sbjct: 369 NVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIV 428

Query: 302 YD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
            D   ++++ N+L+DMY KCG   +A  +FS +  +  + W+ MIS   Q G  ++ LKL
Sbjct: 429 TDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKL 488

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDG---WNHFKSMKKFYGIDPGREHYSCMID 416
           F  M+ ++I  +  T   ++ AC+    +  G    +H         +  G    S ++D
Sbjct: 489 FVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSG----SALVD 544

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           +  + G +++A+++  EMP   ++V+W AL+ A
Sbjct: 545 MYAKCGSIKDALQMFQEMPVR-NSVSWNALISA 576



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 150/262 (57%), Gaps = 5/262 (1%)

Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
           F  N ++  ++K   L EA+ LFD M +R  V+WT +I  Y       +A  L I M R 
Sbjct: 133 FSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRH 192

Query: 170 GVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           G+ P+  + + +L      DS+  +RQ+H  +IK+G++S + V ++L+D Y K   L  A
Sbjct: 193 GIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLA 252

Query: 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
             +FN++P RD V +N+++ G+++     EA+NL+ +M+  G+   + T  ++L A   L
Sbjct: 253 FQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQL 312

Query: 287 ALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
             +E G QVH  V+K  +  ++ + NALLD Y K   + +A  +F  M + D IS++ ++
Sbjct: 313 DDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLV 372

Query: 345 SGLAQNGYSQEALKLFESMKVS 366
           +  A NG  +E+L+LF+ ++ +
Sbjct: 373 TCYAWNGRVKESLELFKELQFT 394



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 129/257 (50%), Gaps = 30/257 (11%)

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           ++F  + +I  Y K G L  A  +F+ M  R  V W  +IGG+AQN+   EA  L+  M 
Sbjct: 131 NIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMG 190

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLE 323
           R G   D  +L ++L   T    +    QVH HV+K  YD  L+++N+LLD YCK  SL 
Sbjct: 191 RHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLG 250

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
            A  +F+ + ++D ++++ +++G ++ G+++EA+ LF  M+    +P   T   +L A  
Sbjct: 251 LAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGI 310

Query: 384 HAGFVEDG-------------WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
               +E G             WN F +              + ++D   +  ++ EA KL
Sbjct: 311 QLDDIEFGQQVHGFVVKCNFVWNVFVA--------------NALLDFYSKHDRVVEASKL 356

Query: 431 IHEMPYEPDAVTWRALL 447
            +EMP E D +++  L+
Sbjct: 357 FYEMP-EVDGISYNVLV 372


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/540 (41%), Positives = 337/540 (62%), Gaps = 6/540 (1%)

Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
           F+ + L++ +V+    ++A  LFD++P++++VSW ++IS +         L LL  M  E
Sbjct: 74  FIGDQLVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFE 133

Query: 170 -GVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
            G++PN  T   V+ AC     L + + +H   +K G   +V V ++LI++Y K G L  
Sbjct: 134 MGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEA 193

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A C+F  M  + LV WNS++         ++ +  +  M+RAG  +DQ+T+ S+L AC  
Sbjct: 194 ACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACEN 253

Query: 286 LALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L + +L   VH ++L    D +L +  ALLD+Y K G+L D+  VF  MI  D ++W+ M
Sbjct: 254 LGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAM 313

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           +S  A +G  +EA++ FE M    + P+++T   +L ACSH+G VE+G N+FK M +FYG
Sbjct: 314 LSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYG 373

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           ++   EHYSCM+DLLGR+G L +A KLI  MP EP++  W AL+GAC+V  N +L    A
Sbjct: 374 VELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVA 433

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
           +++ +LDP D   YI LSN+Y+ + +W + ++VR  M+ R + + PGCS+IE   +IH F
Sbjct: 434 ERLFSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGNKIHCF 493

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
            + D SHP  ++I   L+ L++K   VG+A  T YVL D++ E KED I  HSEKLAI F
Sbjct: 494 VMGDQSHPDTEQIYNKLEELVRKNREVGFASKTEYVLHDVDEEVKEDLINKHSEKLAIAF 553

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GL+    G  + I KN+RICGDCH FAKL + +E +TI+IRD  R+HHF +G CSCGDYW
Sbjct: 554 GLLVTNAGMPLIITKNIRICGDCHGFAKLISLIEKRTIIIRDTKRFHHFTNGLCSCGDYW 613



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 25/223 (11%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  G+ +D  T   L+  C      + A+ VH ++L+GG +    +   LL+++ K   
Sbjct: 232 MRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGT 291

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L ++  +F  M   + V+WT M+S+Y       +A+E    M+REGV P+  T++ +L A
Sbjct: 292 LSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSA 351

Query: 185 CDSLIILRQLHCGIIK------------VGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           C         H G+++             G E  V   S ++D+  + G L +A  +   
Sbjct: 352 CS--------HSGLVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKS 403

Query: 233 MPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           MP   +  VW ++IG      +++    + +R+    F+ D S
Sbjct: 404 MPMEPNSGVWGALIGACRVRGNIELGKEVAERL----FSLDPS 442


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/565 (40%), Positives = 335/565 (59%), Gaps = 40/565 (7%)

Query: 119 HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTY 178
           +V+   L  A+ L + M +   V+W  MIS Y      ++A +LL  M   G++ + +TY
Sbjct: 218 YVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTY 277

Query: 179 SAVLRACDS---LIILRQLHCGIIKVGFESD----VFVRSALIDIYAKLGELRNAECVFN 231
           ++V+ A  +     I RQ+H  +++   +      + V +ALI +Y + G+L  A  VF+
Sbjct: 278 TSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFD 337

Query: 232 EMPTRDLVVWNSI-------------------------------IGGFAQNSDVDEALNL 260
           +MP +DLV WN+I                               I G AQN   +E L L
Sbjct: 338 KMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKL 397

Query: 261 YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD--LILNNALLDMYCK 318
           + +MK  G           + +C+ L  L+ G Q+H  +++  HD  L + NAL+ MY +
Sbjct: 398 FNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSR 457

Query: 319 CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
           CG +E A +VF  M   D +SW+ MI+ LAQ+G+  +A++L+E M    I P+ IT + +
Sbjct: 458 CGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTI 517

Query: 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP 438
           L ACSHAG V++G ++F +M+  YGI P  +HYS +IDLL RAG   EA  +   MP+EP
Sbjct: 518 LSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEP 577

Query: 439 DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRK 498
            A  W ALL  C +H N +L I AA ++L L PQ  GTYI LSN+YA   +WDEVA VRK
Sbjct: 578 GAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRK 637

Query: 499 TMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNY 558
            MR RG+ KEPGCSWIEV   +H F V D+ HP++  + ++L+ L+ ++  +GY PDT +
Sbjct: 638 LMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPDTKF 697

Query: 559 VLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMEN 618
           VL D+E EQKE ++  HSEKLA+V+G+M L  G TIR+ KNLRICGDCH   K  +K+ +
Sbjct: 698 VLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVD 757

Query: 619 QTIVIRDPIRYHHFQDGNCSCGDYW 643
           + I++RD  R+HHF++G CSC +YW
Sbjct: 758 REIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 150/534 (28%), Positives = 233/534 (43%), Gaps = 120/534 (22%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
           A+ VH H+L+ GF+P   ++N L++ + K   +  A+ LFD++P+ ++V+ TTM+SAY  
Sbjct: 15  ARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSA 74

Query: 153 A---------------KMNDK------------------ALELLIFMLREGVRPNMFTYS 179
           A                + D                   AL+L + M R G  P+ FT+S
Sbjct: 75  AGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFS 134

Query: 180 AVLRA----CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE---------LRNA 226
           +VL A     D     +QLHC + K G  S   V +AL+  Y              +  A
Sbjct: 135 SVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAA 194

Query: 227 ECVFNEMP------------------------TRDL---------VVWNSIIGGFAQNSD 253
             +F+E P                         R+L         V WN++I G+     
Sbjct: 195 RKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGF 254

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY------DHDLI 307
            +EA +L +RM   G   D+ T TSV+ A +   L  +G QVH +VL+          L 
Sbjct: 255 YEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLS 314

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS---------------------------- 339
           +NNAL+ +Y +CG L +A  VF +M  KD++S                            
Sbjct: 315 VNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRS 374

Query: 340 ---WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
              W+ MISGLAQNG+ +E LKLF  MK+  ++P      G + +CS  G +++G     
Sbjct: 375 LLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNG-QQLH 433

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
           S     G D      + +I +  R G ++ A  +   MPY  D+V+W A++ A   H + 
Sbjct: 434 SQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPY-VDSVSWNAMIAALAQHGHG 492

Query: 457 DLAICAAKKILNLDP-QDPGTYILLSNIYANSQKWDEVAEVRKTMRA-RGITKE 508
             AI   +K+L  D   D  T++ + +  +++    E      TMR   GIT E
Sbjct: 493 VQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPE 546



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 25/205 (12%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            +K  + M+  G+      YA  I  C    +++  + +H+ ++  G +    + N L+ 
Sbjct: 394 GLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALIT 453

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ +  L+E A  +F  MP  + VSW  MI+A        +A++L   ML+E + P+  T
Sbjct: 454 MYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRIT 513

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGF--------------ESDVFVRSALIDIYAKLGEL 223
           +  +L AC         H G++K G               E D + R  LID+  + G  
Sbjct: 514 FLTILSACS--------HAGLVKEGRHYFDTMRVCYGITPEEDHYSR--LIDLLCRAGMF 563

Query: 224 RNAECVFNEMPTR-DLVVWNSIIGG 247
             A+ V   MP      +W +++ G
Sbjct: 564 SEAKNVTESMPFEPGAPIWEALLAG 588



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 107/245 (43%), Gaps = 18/245 (7%)

Query: 281 RACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
           R    L+       VH H+L   +    ++ N L+D YCK  ++  A  +F ++ + D++
Sbjct: 4   RYLAQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIV 63

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVS-RIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           + +TM+S  +  G  + A +LF +  +S R   +Y  ++   F+ SH G        F  
Sbjct: 64  AATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMI-TAFSHSHDGHA--ALQLFVQ 120

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA---CKVH- 453
           MK+  G  P    +S ++  L      +   + +H   ++  A++  ++L A   C V  
Sbjct: 121 MKRL-GFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSC 179

Query: 454 -----RNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
                 N+ + + AA+K+ +  P         + I A   + D++   R+ +   G+T  
Sbjct: 180 ASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELL--EGMTDH 237

Query: 509 PGCSW 513
              +W
Sbjct: 238 IAVAW 242


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/578 (38%), Positives = 345/578 (59%), Gaps = 6/578 (1%)

Query: 69   GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
            GV  D  T   ++        +   + +H   +   F  E    N LL+M+ K   L  A
Sbjct: 566  GVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGA 625

Query: 129  QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC--- 185
              +F +M +  +VSWT+ I+AY    +   A+ L   M  +GVRP+++T ++++ AC   
Sbjct: 626  TEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACS 685

Query: 186  DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             SL   R +H  +IK G  S++ V +ALI++YAK G +  A  VF+++P +D+V WN++I
Sbjct: 686  SSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMI 745

Query: 246  GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YD 303
            GG++QNS  +EAL L+  M++  F  D  T+  VL AC GLA L+ G ++H H+L+  Y 
Sbjct: 746  GGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYF 804

Query: 304  HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
             DL +  AL+DMY KCG L  A  +F  + +KD+ISW+ MI+G   +G+  EA+  F  M
Sbjct: 805  SDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEM 864

Query: 364  KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
            +++ I+P+  +   +L ACSH+G + +GW  F SM+   G++P  EHY+C++DLL R G 
Sbjct: 865  RIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGN 924

Query: 424  LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
            L +A K I  MP +PD   W  LL  C++H +  LA   A+ I  L+P +   Y++L+N+
Sbjct: 925  LSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANV 984

Query: 484  YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
            YA ++KW+EV ++RK M+ RG  + PGCSWIEV  + + F   +S HPQ  +I+  L+ L
Sbjct: 985  YAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKL 1044

Query: 544  IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
              ++    Y     YVL + +  +KE     HSEK A+ FG+++L  G+T+R+ KN R+C
Sbjct: 1045 TMQMQNEDYFSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNQRVC 1104

Query: 604  GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641
            GDCH   K  +K   + IV+RD  R+HHF+DG CSC D
Sbjct: 1105 GDCHEMGKFMSKTTKREIVLRDSNRFHHFKDGLCSCRD 1142



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 147/446 (32%), Positives = 240/446 (53%), Gaps = 15/446 (3%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  GV  +  T+  ++KC  A   V+E K VH +VL  GF   T +VN L+  + KF  
Sbjct: 461 MQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGG 520

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +E A  LFD++ E +VVSW +MI+       +   LE+ I ML  GV  ++ T  +VL A
Sbjct: 521 VESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVA 580

Query: 185 ---CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
                +L + R LH   +K  F  +V   + L+D+Y+K G L  A  VF +M    +V W
Sbjct: 581 WANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSW 640

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            S I  + +     +A+ L+  M+  G   D  T+TS++ AC   + L+ G  VH +V+K
Sbjct: 641 TSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK 700

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
                +L + NAL++MY KCGS+E+A  VFS++  KD++SW+TMI G +QN    EAL+L
Sbjct: 701 NGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALEL 760

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSC-MIDL 417
           F  M+  + KP+ IT+  VL AC+    ++ G   H   +++ Y  D    H +C ++D+
Sbjct: 761 FLDMQ-KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL---HVACALVDM 816

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAK--KILNLDPQDPG 475
             + G L  A +L+ +M  + D ++W  ++    +H   + AI      +I  ++P D  
Sbjct: 817 YAKCGLLVLA-QLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEP-DES 874

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMR 501
           ++ ++ N  ++S   +E  +   +MR
Sbjct: 875 SFSVILNACSHSGLLNEGWKFFNSMR 900



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 231/435 (53%), Gaps = 15/435 (3%)

Query: 22  SLTITPPVA-SCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAEL 80
           ++ ++P    + +++T+N ++ ++   +FC   DL  A++ +   + + +  +S  Y  +
Sbjct: 321 TVCVSPSFTNTTHSVTQNQNAKIN---KFCEMGDLRNAIELLTKSKSYELGLNS--YCSV 375

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
           ++ C  + ++E+ K VH+ ++S G   +  L   L+ M+V    L + + +FD++    V
Sbjct: 376 LQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKV 435

Query: 141 VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCG 197
             W  ++S Y       +++ L   M + GV  N +T++ VL+   +L  +++   +H  
Sbjct: 436 FLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGY 495

Query: 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEA 257
           ++K+GF S+  V ++LI  Y K G + +A  +F+E+   D+V WNS+I G   N      
Sbjct: 496 VLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNG 555

Query: 258 LNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDM 315
           L ++ +M   G   D +TL SVL A   +  L LG  +H   +K  +  +++ +N LLDM
Sbjct: 556 LEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDM 615

Query: 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITI 375
           Y KCG+L  A  VF +M    ++SW++ I+   + G   +A+ LF+ M+   ++P+  T+
Sbjct: 616 YSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTV 675

Query: 376 VGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
             ++ AC+ +  ++ G + H   +K   G+       + +I++  + G ++EA  +  ++
Sbjct: 676 TSIVHACACSSSLDKGRDVHSYVIKN--GMGSNLPVTNALINMYAKCGSVEEARLVFSKI 733

Query: 435 PYEPDAVTWRALLGA 449
           P + D V+W  ++G 
Sbjct: 734 PVK-DIVSWNTMIGG 747



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 160/296 (54%), Gaps = 8/296 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     MQ  GVR D  T   ++  C    ++++ + VH++V+  G      + N L+N
Sbjct: 656 AIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALIN 715

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +EEA+++F ++P +++VSW TMI  Y    + ++ALEL + M ++  +P+  T
Sbjct: 716 MYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDIT 774

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            + VL AC  L  L   R++H  I++ G+ SD+ V  AL+D+YAK G L  A+ +F+ +P
Sbjct: 775 MACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIP 834

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            +DL+ W  +I G+  +   +EA++ +  M+ AG   D+S+ + +L AC+   LL  G +
Sbjct: 835 KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWK 894

Query: 295 VHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
               +      +  L     ++D+  + G+L  A      M I+ D   W  ++SG
Sbjct: 895 FFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 950



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 106/212 (50%), Gaps = 7/212 (3%)

Query: 52  QRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Q  LP  A++    MQ    + D +T A ++  C    A+++ + +H H+L  G+  +  
Sbjct: 750 QNSLPNEALELFLDMQ-KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLH 808

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           +   L++M+ K  LL  AQ+LFD +P+++++SWT MI+ Y      ++A+     M   G
Sbjct: 809 VACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAG 868

Query: 171 VRPNMFTYSAVLRACDSLIILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           + P+  ++S +L AC    +L +     +    + G E  +   + ++D+ A++G L  A
Sbjct: 869 IEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKA 928

Query: 227 ECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
                 MP + D  +W  ++ G   + DV  A
Sbjct: 929 YKFIESMPIKPDTTIWGVLLSGCRIHHDVKLA 960


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/632 (36%), Positives = 353/632 (55%), Gaps = 43/632 (6%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D   A++    M+C  ++ +S TY  +I        + E + +H  +++ GF+ +  +  
Sbjct: 188 DWSGALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVAT 246

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L+NM+ K     EA+ +FD+M +R++VSW  MI  Y       +ALEL   +  EG + 
Sbjct: 247 ALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKR 306

Query: 174 NMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
              T+ ++L AC S+  L Q   +H  I++ G +S+V V +AL+++YAK G L  A  VF
Sbjct: 307 TKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVF 366

Query: 231 NEMPTRDLVVWNSIIGGFAQNS---DVDEALNLYKRMKR--------------------- 266
           N M  RD V W+++IG +A N    D  +A  ++ R+                       
Sbjct: 367 NAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVA 426

Query: 267 -----------AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
                      AG   D  T  +VL AC  L  L     +H  + +   + ++++ N L+
Sbjct: 427 AMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLI 486

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           +MY +CGSLE+A  +F+   +K V+SW+ M++  +Q G   EAL LF+ M +  +KP+ +
Sbjct: 487 NMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDV 546

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
           T   +LF C+H G +E GW +F  M + +G+ P  +H++ M+DLLGR+G+L +A +L+  
Sbjct: 547 TYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLES 606

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
           MP+EPD V W   L AC++H   +L   AA+++  LDP     YI +SNIYA    W++V
Sbjct: 607 MPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKV 666

Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYA 553
           A VRK M  RG+ K PG S+IEV+ ++H F+     HP+ D+I + L  L   +   GY 
Sbjct: 667 ASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYV 726

Query: 554 PDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM-SLTQGKTIRIRKNLRICGDCHTFAKL 612
           PDT  VL D+   +KE  + YHSEK+AI FGL+ S   G+ IR+ KNLR+C DCHT  K 
Sbjct: 727 PDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKF 786

Query: 613 TAKMENQTIVIRDPIRYHHF-QDGNCSCGDYW 643
            A++  + I++RD  R+H F  DG CSCGDYW
Sbjct: 787 IARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/382 (31%), Positives = 209/382 (54%), Gaps = 9/382 (2%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D+VT+  ++  C +   V E + +H  +    FE +T + N L++M+ K   L +A+ +F
Sbjct: 6   DNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVF 65

Query: 133 DQMP--ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           + M   +RNVVSW  MI+AY     + +AL L   M  +G+  +  T+ +VL AC SL  
Sbjct: 66  ESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ 125

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
            R++H  +   G +S   + +AL+ +YA+ G + +A+ +F  + TRD   WN++I   +Q
Sbjct: 126 GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQ 185

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
           + D   AL ++K MK      + +T  +V+   +   +L  G ++H  ++   +D DL++
Sbjct: 186 SGDWSGALRIFKEMK-CDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVV 244

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
             AL++MY KCGS  +A  VF +M ++D++SW+ MI    QNG   EAL+L++ + +   
Sbjct: 245 ATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGF 304

Query: 369 KPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           K    T V +L ACS    +  G   H   +++  G+D      + ++++  + G L+EA
Sbjct: 305 KRTKATFVSILGACSSVKALAQGRLVHSHILER--GLDSEVAVATALVNMYAKCGSLEEA 362

Query: 428 VKLIHEMPYEPDAVTWRALLGA 449
            K+ + M    DAV W  L+GA
Sbjct: 363 RKVFNAMK-NRDAVAWSTLIGA 383


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/577 (39%), Positives = 352/577 (61%), Gaps = 6/577 (1%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D  T+  L+K C      +  K++H  V+      + ++   LLNM+     L+ A+ LF
Sbjct: 78  DRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLF 137

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL- 191
           ++M  RN V WT+MIS Y      ++AL L   M  +G  P+  T + ++ AC  L  L 
Sbjct: 138 ERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLG 197

Query: 192 --RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
              +LH  I ++  +    + SAL+++YAK G+L+ A  VF+++  +D+  W+++I G+ 
Sbjct: 198 VGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYV 257

Query: 250 QNSDVDEALNLYKRMKR-AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDL 306
           +N+   EAL L++ +   +    ++ T+ +V+ AC  L  LE G  VH ++ +    H +
Sbjct: 258 KNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSV 317

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
            LNN+L+DM+ KCG ++ A  +F  M  KD+ISW++M++G A +G  +EAL  F  M+ +
Sbjct: 318 SLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTT 377

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
            ++P+ IT +GVL ACSHAG V++G   F  ++  YG+    EHY CM+DLL RAG L E
Sbjct: 378 DLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAE 437

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           A + I  MP +PD   W ++LGAC+V+ N +L   AA+ +L L+P + G YILLSNIYA 
Sbjct: 438 AREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAK 497

Query: 487 SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
            + W+EV +VR+ M  +GI K PGCS + ++   H+F   D SHP+I +I+  L+ + +K
Sbjct: 498 RKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREK 557

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           L   GY  DT+ VL +++  +KE+S+  HSEKLA+ +GL+    G  I I KNLR+C DC
Sbjct: 558 LKLAGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDC 617

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           HT  KL +K+  + I +RD  R+HHF+DG+CSC DYW
Sbjct: 618 HTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 146/298 (48%), Gaps = 24/298 (8%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  G   D VT A L+  C     +     +H+H+     +    L + L+NM+ K   
Sbjct: 171 MEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGD 230

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-----GVRPNMFTYS 179
           L+ A+ +FD++ +++V +W+ +I  Y     + +AL+L     RE      +RPN  T  
Sbjct: 231 LKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQL----FREVAGGSNMRPNEVTIL 286

Query: 180 AVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           AV+ AC  L  L   R +H  I +      V + ++LID+++K G++  A+ +F+ M  +
Sbjct: 287 AVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYK 346

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           DL+ WNS++ GFA +    EAL  ++ M+      D+ T   VL AC+   L++ G ++ 
Sbjct: 347 DLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLF 406

Query: 297 VHV-------LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
             +       LK +H       ++D+ C+ G L +A      M +Q D   W +M+  
Sbjct: 407 YEIEALYGVRLKSEH----YGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGA 460



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 134/273 (49%), Gaps = 13/273 (4%)

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACT 284
           A  VF      D++ WNS++  F  ++    AL  Y  M +R+    D+ T  S+L+ C 
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 285 GLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            L   ++G  +H  V+KY    DL +   LL+MY  CG L+ A  +F RM  ++ + W++
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW---NHFKSMK 399
           MISG  +N    EAL L++ M+     P+ +T+  ++ AC+    +  G    +H + M 
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL-GACKVHRNTDL 458
                  G    S ++++  + G L+ A ++  ++  + D   W AL+ G  K +R+T+ 
Sbjct: 211 MKICAVLG----SALVNMYAKCGDLKTARQVFDKLS-DKDVYAWSALIFGYVKNNRSTE- 264

Query: 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
           A+   +++       P    +L+ I A +Q  D
Sbjct: 265 ALQLFREVAGGSNMRPNEVTILAVISACAQLGD 297


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/580 (39%), Positives = 359/580 (61%), Gaps = 10/580 (1%)

Query: 74  SVTYAELIKCCLAR-HAVEEAKLVHNHVLSGGFEPETFLVNILLN---MHVKFSLLEEAQ 129
           + TY   +  CL +  +++E K +    +    + +  ++  L+N    +   + ++ A 
Sbjct: 22  NTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAH 81

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---D 186
            LF+ +P+ ++V + +M   Y  +    KA+ L I  L   + P+ +T+ ++L+AC    
Sbjct: 82  QLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAK 141

Query: 187 SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
           +    +QLHC  IK+G   + +V   LI++YA   ++  A+ VF+E+    +V +N+II 
Sbjct: 142 AFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIIT 201

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDH 304
           G+A++S  +EAL+L+++++      +  T+ SVL +C  L  L+LG  +H +V K   D 
Sbjct: 202 GYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDK 261

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
            + +N AL+DMY KCGSL+ A+SVF  M  +D  +WS MI   A +G  Q+ + +FE M 
Sbjct: 262 YVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMA 321

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
            ++++P+ IT +G+L+ACSH G V++G+ +F SM + YGI PG +HY CM+DLLGRAG L
Sbjct: 322 RAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLL 381

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484
            EA K I E+P +P  + WR LL +C  H N +LA     +IL LD    G Y++LSN+ 
Sbjct: 382 HEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNLC 441

Query: 485 ANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLI 544
           A + KW++V  +RK M  +G  K PGCS IEV+  +H F   D  H     +++ L  L+
Sbjct: 442 ARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRALDELV 501

Query: 545 QKLVGVGYAPDTNYVLQ-DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
           ++L  VGY PDT+ V+  D+E E+KE +++YHSEKLAI FGL++   G TIR+ KNLR+C
Sbjct: 502 KELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTIRVVKNLRVC 561

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GDCH+ AKL + + ++ I++RD  R+HHF+DG CSCGDYW
Sbjct: 562 GDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 147/292 (50%), Gaps = 9/292 (3%)

Query: 68  HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           + +  D  T+  L+K C+   A ++ K +H   +  G     ++   L+NM+   + ++ 
Sbjct: 121 YNLLPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDG 180

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC-- 185
           AQ +FD++ E  VVS+  +I+ Y  +   ++AL L   +    ++PN  T  +VL +C  
Sbjct: 181 AQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCAL 240

Query: 186 -DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
             +L + + +H  + K G +  V V +ALID+YAK G L  A  VF  M  RD   W+++
Sbjct: 241 LGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAM 300

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
           I  +A +    + +++++ M RA    D+ T   +L AC+   L++ G + + + +   +
Sbjct: 301 IVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFR-YFYSMSEVY 359

Query: 305 DLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNG 351
            +I        ++D+  + G L +A      + I+   I W T++S  + +G
Sbjct: 360 GIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHG 411



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 104/252 (41%), Gaps = 31/252 (12%)

Query: 19  RQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYA 78
           R F   + P V S N I           T +        A+     +Q   ++ + VT  
Sbjct: 183 RVFDEILEPCVVSYNAI----------ITGYARSSRPNEALSLFRQLQARKLKPNDVTVL 232

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
            ++  C    A++  K +H +V   G +    +   L++M+ K   L+ A  +F+ M  R
Sbjct: 233 SVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVR 292

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGI 198
           +  +W+ MI AY         + +   M R  V+P+  T+  +L AC         H G+
Sbjct: 293 DTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACS--------HTGL 344

Query: 199 IKVGFE-----SDVFV-------RSALIDIYAKLGELRNAECVFNEMPTRDL-VVWNSII 245
           +  GF      S+V+           ++D+  + G L  A    +E+P +   ++W +++
Sbjct: 345 VDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLL 404

Query: 246 GGFAQNSDVDEA 257
              + + +++ A
Sbjct: 405 SSCSSHGNLELA 416


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/558 (41%), Positives = 340/558 (60%), Gaps = 21/558 (3%)

Query: 91  EEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           ++ K +H  +L  G   + F  + L+       F  L+ AQ +FDQ+P  N+ +W T+I 
Sbjct: 49  KQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIR 108

Query: 149 AYCDAKMNDKALELLIFMLREGVR-PNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFE 204
           AY  +    ++L + + ML +    P+ FT+  +++A    + L   +  H  +IKV   
Sbjct: 109 AYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLG 168

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
           SDVF+ ++LI  YAK GEL     VF   P RD+V WNS+I  F Q    +EAL L++ M
Sbjct: 169 SDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEM 228

Query: 265 KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSL 322
           +      +  T+  VL AC   +  E G  VH ++ +      L L+NA+LDMY KCGS+
Sbjct: 229 ETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSV 288

Query: 323 EDAMSVFSRMIQKDVISWSTMI------------SGLAQNGYSQEALKLFESMKVSRIKP 370
           EDA  +F +M +KD++SW+TM+             GLA +G+ ++A+ LF  M+  ++KP
Sbjct: 289 EDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKP 348

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           N +T   +L ACSH G VE+G   F  M+  YG+ PG +HY+CM+D+LGRAG L+EAV+L
Sbjct: 349 NAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVEL 408

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
           I +MP  P A  W ALLGAC +H N  LA  A  +++ L+P + G Y+LLSNIYA + KW
Sbjct: 409 IEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKW 468

Query: 491 DEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGV 550
           D V+ +RK MR  G+ KEPGCS IEV+  +H F V D+SHP   KI   L  ++ +L  +
Sbjct: 469 DRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETI 528

Query: 551 GYAPDTNYVLQDLEGEQ-KEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
           GY P+ +++LQ +E E  KE ++  HSEKLAI FGL+S  Q + IRI KNLR+CGDCH+ 
Sbjct: 529 GYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSV 588

Query: 610 AKLTAKMENQTIVIRDPI 627
           AKL +K+ ++ I++RD +
Sbjct: 589 AKLVSKLYDREILLRDRV 606



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 141/294 (47%), Gaps = 21/294 (7%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D  T+  LIK       +   K  H  V+      + F++N L++ + K   L     +F
Sbjct: 135 DKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVF 194

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLI 189
              P R+VVSW +MI+A+      ++ALEL   M  + V+PN  T   VL AC       
Sbjct: 195 VNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFE 254

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
             R +H  I +      + + +A++D+Y K G + +A+ +F++MP +D+V W +++ G+A
Sbjct: 255 FGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYA 314

Query: 250 QNSDVD------------EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           +  + D            +A+ L+ +M+      +  T T++L AC+ + L+E G +   
Sbjct: 315 KIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEG-RTFF 373

Query: 298 HVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRMIQKDVIS-WSTMISG 346
           + ++  + ++        ++D+  + G LE+A+ +  +M      S W  ++  
Sbjct: 374 NQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGA 427



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 33/215 (15%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+   V+ + +T   ++  C  +   E  + VH+++          L N +L+
Sbjct: 221 ALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLD 280

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK------------ALELLIF 165
           M+ K   +E+A+ LFD+MPE+++VSWTTM+  Y      D             A+ L   
Sbjct: 281 MYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSK 340

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVG---FESDVFVRSAL--------- 213
           M  + V+PN  T++ +L AC         H G+++ G   F     V   L         
Sbjct: 341 MQEDKVKPNAVTFTNILCACS--------HVGLVEEGRTFFNQMELVYGVLPGVKHYACM 392

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLV-VWNSIIGG 247
           +DI  + G L  A  +  +MP      VW +++G 
Sbjct: 393 VDILGRAGLLEEAVELIEKMPMAPAASVWGALLGA 427


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/559 (40%), Positives = 343/559 (61%), Gaps = 6/559 (1%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           ++   + +H  V       + F+ + L+  + K    E+A  LFD MP +++VSW ++IS
Sbjct: 54  SISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLIS 113

Query: 149 AYCDA-KMNDKALELLIFMLREGVRPNMFTYSAVLRACD-SLIILRQLHCGIIKVGFESD 206
            +     M+  A   + F +   V+PN  T  +++ AC+ +L   + +H   IKVG   +
Sbjct: 114 GFSRCLHMSLTAFYTMKFEMS--VKPNEVTILSMISACNGALDAGKYIHGFGIKVGGTLE 171

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
           V V ++LI++Y K G+L +A  +F  +P  + V WNSII     N    E ++ + +M+R
Sbjct: 172 VKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRR 231

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLED 324
            G   D+ T+ ++L+AC  L + +L   +H  +    +   + +  ALLD Y K G L  
Sbjct: 232 LGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSA 291

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           +  VF+ +   D ++W+ M++G A +G  +EA+KLFESM    ++P+++T   +L ACSH
Sbjct: 292 SYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSH 351

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           +G V +G ++F  M + YGI+P  +HYSCM+DLLGR G L +A ++I  MP EP+A  W 
Sbjct: 352 SGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWG 411

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
           ALLGAC+VH N +L    A+ ++N++P DP  YI+LSN+Y+ S+ W + A+VR  ++ RG
Sbjct: 412 ALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERG 471

Query: 505 ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLE 564
           + + PG S IE   + H F V D SHP+ +KI   L+ L+ K+   GY+  T YVLQD+E
Sbjct: 472 LKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVE 531

Query: 565 GEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIR 624
            E KED I  HSEKLAI FGL+   +G+ + I KNLRICGDCH+ AKL + +E +TI+IR
Sbjct: 532 EEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIR 591

Query: 625 DPIRYHHFQDGNCSCGDYW 643
           DP R+HHF DG CSC DYW
Sbjct: 592 DPKRFHHFSDGFCSCADYW 610



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 106/254 (41%), Gaps = 31/254 (12%)

Query: 15  SSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADS 74
           +S  R F     P   S N+I      +    T  C +      +   + M+  G+  D 
Sbjct: 189 TSACRLFEAIPDPNTVSWNSI------IAAQVTNGCARE----GIDYFNKMRRLGIEQDE 238

Query: 75  VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ 134
            T   L++ CL     + A+ +H  +   GF  +  +   LL+ + K   L  +  +F +
Sbjct: 239 GTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTE 298

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQL 194
           +   + V+WT M++ Y    +  +A++L   M  +G+ P+  T++ +L AC         
Sbjct: 299 VGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACS-------- 350

Query: 195 HCGIIK------------VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVW 241
           H G++              G E  V   S ++D+  + G L +A  V   MP   +  VW
Sbjct: 351 HSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVW 410

Query: 242 NSIIGGFAQNSDVD 255
            +++G    + +++
Sbjct: 411 GALLGACRVHGNIE 424


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 246/674 (36%), Positives = 365/674 (54%), Gaps = 101/674 (14%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMH----------- 119
           + DS TY  L++CC AR +  E + +H H +S GF+ + ++ N L+N++           
Sbjct: 102 KPDSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARR 161

Query: 120 --------------------VKFSLLEEAQVLFDQMPERN-------------------- 139
                               V+   +EEA+ +F+ MPERN                    
Sbjct: 162 VFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKA 221

Query: 140 -------------VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD 186
                        +VSW+ M+S Y   +M ++AL L + M   GV  +     + L AC 
Sbjct: 222 RRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACS 281

Query: 187 SLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL-------------------- 223
            ++   + R +H   +KVG E  V +++ALI +Y+  GE+                    
Sbjct: 282 RVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWN 341

Query: 224 ------------RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
                       ++AE +F  MP +D+V W+++I G+AQ+    EAL L++ M+  G   
Sbjct: 342 SMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRP 401

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVF 329
           D++ L S + ACT LA L+LG  +H ++   K   ++IL+  L+DMY KCG +E+A+ VF
Sbjct: 402 DETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVF 461

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
             M +K V +W+ +I GLA NG  +++L +F  MK +   PN IT +GVL AC H G V 
Sbjct: 462 YAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVN 521

Query: 390 DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           DG ++F SM   + I+   +HY CM+DLLGRAG L+EA +LI  MP  PD  TW ALLGA
Sbjct: 522 DGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGA 581

Query: 450 CKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEP 509
           C+ HR+ ++     +K++ L P   G ++LLSNIYA+   W  V E+R  M   G+ K P
Sbjct: 582 CRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTP 641

Query: 510 GCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKE 569
           GCS IE N  +H F   D +HPQI+ I   L  +  KL   GY P T+ V  D++ E+KE
Sbjct: 642 GCSMIEANGTVHEFLAGDKTHPQINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDEEEKE 701

Query: 570 DSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRY 629
            ++  HSEKLA+ FGL++++    IR+ KNLRIC DCHT  KL +K  ++ IV+RD  R+
Sbjct: 702 TALFRHSEKLAVAFGLITISPPTPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRF 761

Query: 630 HHFQDGNCSCGDYW 643
           HHF+ G CSC D+W
Sbjct: 762 HHFKHGACSCMDFW 775



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 175/393 (44%), Gaps = 78/393 (19%)

Query: 131 LFDQMPERNVVSWTTMISA--YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           +F+ +   N  +W T++ A  Y     +   L   +F L    +P+ +TY  +L+ C + 
Sbjct: 60  IFNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLF-LASHAKPDSYTYPILLQCCAAR 118

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
           +     RQLH   +  GF+ DV+VR+ L+++YA  G + +A  VF E P  DLV WN+++
Sbjct: 119 VSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLL 178

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD 305
            G+ Q  +V+EA  +++ M                                      + +
Sbjct: 179 AGYVQAGEVEEAERVFEGMP-------------------------------------ERN 201

Query: 306 LILNNALLDMYCKCGSLEDAMSVFS--RMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            I +N+++ ++ + G +E A  +F+  R  ++D++SWS M+S   QN   +EAL LF  M
Sbjct: 202 TIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEM 261

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDG-WNH----------FKSMKK----FYG----- 403
           K S +  + + +V  L ACS    VE G W H          + S+K      Y      
Sbjct: 262 KGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEI 321

Query: 404 ------IDPGRE-----HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
                  D G E      ++ MI    R G +Q+A  L + MP E D V+W A++     
Sbjct: 322 VDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMP-EKDVVSWSAMISGYAQ 380

Query: 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           H     A+   ++ + L    P    L+S I A
Sbjct: 381 HECFSEALALFQE-MQLHGVRPDETALVSAISA 412



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 166/364 (45%), Gaps = 43/364 (11%)

Query: 50  CYQRDL--PRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY+++     A+     M+  GV  D V     +  C     VE  + VH   +  G E 
Sbjct: 244 CYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVED 303

Query: 108 ETFLVNILLNM--------------------------------HVKFSLLEEAQVLFDQM 135
              L N L+++                                +++   +++A++LF  M
Sbjct: 304 YVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSM 363

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---R 192
           PE++VVSW+ MIS Y   +   +AL L   M   GVRP+     + + AC  L  L   +
Sbjct: 364 PEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGK 423

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            +H  I +   + +V + + LID+Y K G + NA  VF  M  + +  WN++I G A N 
Sbjct: 424 WIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNG 483

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH---VHVLKYDHDLILN 309
            V+++LN++  MK+ G   ++ T   VL AC  + L+  G       +H  K + ++   
Sbjct: 484 SVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHY 543

Query: 310 NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
             ++D+  + G L++A  +   M +  DV +W  ++    ++  ++   +L    K+ ++
Sbjct: 544 GCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERL--GRKLIQL 601

Query: 369 KPNY 372
           +P++
Sbjct: 602 QPDH 605


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/577 (39%), Positives = 340/577 (58%), Gaps = 12/577 (2%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVH-NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           R  + TY     C LA +A    +L    H+      P+    N LL+ H      + A+
Sbjct: 45  RKTTATY----NCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGAR 100

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            LF  MP R+VVSW TM+S    +   ++A  + + M    VR N  +++A++       
Sbjct: 101 RLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAM---PVR-NSVSWNAMVSGFACSR 156

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
            +            + D  + +A++  Y  +G +  A   F  MP R+LV WN+++ G+ 
Sbjct: 157 DMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYV 216

Query: 250 QNSDVDEALNLYKRMKR-AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDL 306
           +NS  D+AL L++ M R A    + STL+SVL  C+ L+ L  G Q+H   +K     +L
Sbjct: 217 KNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNL 276

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
            +  +L+ MYCKCG L  A  +F  M  +DV++W+ MISG AQ+G  +EA+ LFE MK  
Sbjct: 277 TVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDE 336

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
            ++PN+IT V VL AC H G  + G   F+ M++ YGI+P  +HYSCM+DLL RAGKL+ 
Sbjct: 337 GVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLER 396

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           AV LI  MP+EP    +  LL AC+V++N + A  AA K++  DPQ  G Y+ L+NIYA 
Sbjct: 397 AVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAG 456

Query: 487 SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
           + +WD+V+ VR+ M+   + K PG SWIE+   +H F   D  HPQ+  I++ L  L ++
Sbjct: 457 ANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAER 516

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           +  +GY PD ++VL D++   K   +  HSEKLAI FGL+S   G T+RI KNLR+CGDC
Sbjct: 517 MKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDC 576

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           H  AK+ +K+E++ I++RD  R+HHF+ G+CSCGDYW
Sbjct: 577 HNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 94/242 (38%), Gaps = 45/242 (18%)

Query: 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278
           + G+L  AE  F   P +    +N ++ G+A+                            
Sbjct: 29  RRGDLTGAEEAFASTPRKTTATYNCLLAGYAR---------------------------- 60

Query: 279 VLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
                   AL  L    H+       D +  N LL  +   G  + A  +F+ M  +DV+
Sbjct: 61  --------ALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVV 112

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
           SW+TM+SGL+++G  +EA  +F +M V         + G  FACS      + W      
Sbjct: 113 SWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSG--FACSRDMSAAEEWFRNAPE 170

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
           K    +      ++ M+      G + +A++    MP   + V+W A++     + + D 
Sbjct: 171 KGDAVL------WTAMVSGYMDIGNVVKAIEYFEAMPVR-NLVSWNAVVAGYVKNSHADD 223

Query: 459 AI 460
           A+
Sbjct: 224 AL 225


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/576 (38%), Positives = 353/576 (61%), Gaps = 5/576 (0%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D    ++ ++ C  R ++   K  H   +  G   +T   NIL+N++ K    + A+++F
Sbjct: 56  DVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVF 115

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL- 191
           D M  R++VSW TMI+ Y  +  + +AL+L   M REG   + FT S+ + AC +   + 
Sbjct: 116 DIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAIN 175

Query: 192 --RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
             +QLH   +K+  +S+ FV +A++D+YAK   +++A  VF +MP R LV W+S+  G+ 
Sbjct: 176 ECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYV 235

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           QN   +EAL+L++  +R G    + TL+++L AC  LAL   G Q+H  +LK  +  +  
Sbjct: 236 QNGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFF 295

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           +  +L+D+Y +CG +E A ++F+ M  K+V+ W+ MI+  +++ +S EA+ LFE M+   
Sbjct: 296 VAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLG 355

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           I PN +T + VL  CSHAG VE G ++F  +     ++P   HYSCM+D+LGR+GK  EA
Sbjct: 356 IFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEA 415

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487
            +L+++MP+EP A  W +LLG+C+ + N  LA  AA+++  L+P + G ++LLSN+YA S
Sbjct: 416 WELLNKMPFEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAAS 475

Query: 488 QKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL 547
             W+ V   RK ++  G  KE G SWIE   ++H F V +  HP+I  I   L+ +  ++
Sbjct: 476 GNWENVLMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEIYHEM 535

Query: 548 VGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCH 607
                       L D+  EQKE+ +++HSEKLA+ FGL+SL     I I KNLRICGDCH
Sbjct: 536 RKFARRTSIECDLHDVHAEQKEELLKHHSEKLALSFGLISLPSNIPIIIHKNLRICGDCH 595

Query: 608 TFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +F K+ A +  + +++RD  R+HHF+DG+CSCGD+W
Sbjct: 596 SFMKIAAHITERLVIVRDTNRFHHFKDGSCSCGDFW 631


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/529 (43%), Positives = 335/529 (63%), Gaps = 22/529 (4%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L EA+ LFD+MP RNV+SWTTMIS Y      D A +L   M  +    N  +++A+L  
Sbjct: 187 LAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEK----NEVSWTAML-- 240

Query: 185 CDSLIILRQLHCGIIKVGFE-------SDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
                 +     G I+   E         V   +A+I  + + GE+  A  VF+++  +D
Sbjct: 241 ------MGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKD 294

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
              W+++I  + +     EALNL+  M+R G  ++  +L SVL  C  LA L+ G QVH 
Sbjct: 295 DGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHA 354

Query: 298 HVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
            ++K  +D D+ + + L+ MY KCG L  A  +F R   KD++ W+++I+G AQ+G  +E
Sbjct: 355 ELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEE 414

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           AL++F  M  S +  + +T VGVL ACS+ G V++G   F+SMK  Y ++P  EHY+CM+
Sbjct: 415 ALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMV 474

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           DLLGRAG + +A+ LI +MP E DA+ W ALLGAC+ H N +LA  AAKK+L L+P++ G
Sbjct: 475 DLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAG 534

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS-HPQID 534
            YILLSNIYA+  +W +VAE+R+ MR + ++K PGCSWIEV K++H F    S+ HP++ 
Sbjct: 535 PYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELS 594

Query: 535 KINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTI 594
            I K L+ L   L   GY PD+++VL D++ E+K  S+ +HSE+LA+ FGL+ + +G  I
Sbjct: 595 SIMKMLEKLDGMLREAGYYPDSSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPEGMPI 654

Query: 595 RIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           R+ KNLR+CGDCH+  KL AK+  + I++RD  R+HHF+DG CSC DYW
Sbjct: 655 RVMKNLRVCGDCHSAIKLIAKITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 183/384 (47%), Gaps = 56/384 (14%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           E  T   N L++ +VK  ++ EA+  FD MPERNVVSWT M+  Y    +  +A E L +
Sbjct: 75  ERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEA-ETLFW 133

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILRQLH--CGIIKVGFESDVFVRSALIDIYAKLGEL 223
            + E    N+ +++ +L     LI +R++    G+  +    DV  R+ +I  Y + G L
Sbjct: 134 QMPE---KNVVSWTVML---GGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRL 187

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
             A  +F+EMP R+++ W ++I G+ QN  VD A  L++ M       ++ + T++L   
Sbjct: 188 AEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPE----KNEVSWTAMLMGY 243

Query: 284 TGLALLELGTQVHVHVLKYD----HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
           T    +E  +++      +D      ++  NA++  + + G +  A  VF ++ +KD  +
Sbjct: 244 TQGGRIEEASEL------FDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGT 297

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS-----------HAGFV 388
           WS MI    + G+  EAL LF  M+   ++ N+ +++ VL  C+           HA  V
Sbjct: 298 WSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELV 357

Query: 389 EDGWNH------------------FKSMKKFYGIDPGR-EHYSCMIDLLGRAGKLQEAVK 429
           +  ++                    K+ + F    P     ++ +I    + G ++EA++
Sbjct: 358 KSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQ 417

Query: 430 LIHEM---PYEPDAVTWRALLGAC 450
           + HEM       D VT+  +L AC
Sbjct: 418 VFHEMCSSGMATDGVTFVGVLSAC 441



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 127/266 (47%), Gaps = 33/266 (12%)

Query: 187 SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
           SL++  + +C  + + + S        I  YA++G++ +A  VF+EMP + +V WNS++ 
Sbjct: 3   SLLMPCRRYCTSVAIAYNSQ-------IARYARIGQIESARRVFDEMPDKGIVSWNSMVA 55

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR-ACTGLALLELGTQVHVHVLKYDHD 305
           G+ QN+   EA  L+ +M      +    ++  ++      A     T    +V+ +   
Sbjct: 56  GYFQNNRPREARYLFDKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSW--- 112

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
                A++  Y + G + +A ++F +M +K+V+SW+ M+ GL Q     EA  LF+ M V
Sbjct: 113 ----TAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPV 168

Query: 366 SRI--KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE--HYSCMIDLLGRA 421
             +  + N I+           G+ ++G       ++ +   P R    ++ MI    + 
Sbjct: 169 KDVVARTNMIS-----------GYCQEG--RLAEARELFDEMPRRNVISWTTMISGYVQN 215

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALL 447
           G++  A KL   MP E + V+W A+L
Sbjct: 216 GQVDVARKLFEVMP-EKNEVSWTAML 240



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 100/203 (49%), Gaps = 21/203 (10%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     MQ  GV+++  +   ++  C +  +++  + VH  ++   F+ + F+ ++L+ 
Sbjct: 314 ALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLIT 373

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+VK   L +A+ +FD+   +++V W ++I+ Y    + ++AL++   M   G+  +  T
Sbjct: 374 MYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVT 433

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFE------SDVFVR------SALIDIYAKLGELRN 225
           +  VL AC         + G +K G E      S   V       + ++D+  + G + +
Sbjct: 434 FVGVLSACS--------YTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVND 485

Query: 226 AECVFNEMPTR-DLVVWNSIIGG 247
           A  +  +MP   D ++W +++G 
Sbjct: 486 AMDLIQKMPVEADAIIWGALLGA 508


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/555 (39%), Positives = 349/555 (62%), Gaps = 5/555 (0%)

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
           E+++ C    AV EAK  H  ++    E +  L+N+L+N + K   +E A+ +FD M ER
Sbjct: 58  EILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLER 117

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLH 195
           ++VSW TMI  Y   +M  +AL++ + M  EG + + FT S+VL AC      +  ++LH
Sbjct: 118 SLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLH 177

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
           C  +K   + +++V +AL+D+YAK G +++A  VF  M  +  V W+S++ G+ QN + +
Sbjct: 178 CLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYE 237

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
           EAL LY+R +R     +Q TL+SV+ AC+ LA L  G Q+H  + K  +  ++ + ++ +
Sbjct: 238 EALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAV 297

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           DMY KCGSL ++  +FS + +K++  W+T+ISG A++   +E + LFE M+   + PN +
Sbjct: 298 DMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEV 357

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
           T   +L  C H G VE+G   FK M+  YG+ P   HYSCM+D+LGRAG L EA +LI  
Sbjct: 358 TFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKS 417

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
           +P++P A  W +LL +C+V++N +LA  AA+K+  L+P++ G ++LLSNIYA +++W+E+
Sbjct: 418 IPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEI 477

Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYA 553
           A+ RK +R   + K  G SWI++  ++H F+V +S HP+I +I   L +L+ K    GY 
Sbjct: 478 AKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYK 537

Query: 554 PDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLT 613
           P   + L D+E  +KE+ +  HSEKLA+VFGLM L +   +RI KNLRIC DCH F K  
Sbjct: 538 PSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAA 597

Query: 614 AKMENQTIVIRDPIR 628
           +    + I++RD  R
Sbjct: 598 SMATRRFIIVRDVNR 612



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 158/293 (53%), Gaps = 11/293 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++  +TR    R    A+     M+  G +    T + ++  C       E K +H  
Sbjct: 123 NTMIGLYTR---NRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCL 179

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
            +    +   ++   LL+++ K  ++++A  +F+ M +++ V+W++M++ Y   K  ++A
Sbjct: 180 SVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEA 239

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDI 216
           L L     R  +  N FT S+V+ AC +L  L   +Q+H  I K GF S+VFV S+ +D+
Sbjct: 240 LLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDM 299

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           YAK G LR +  +F+E+  ++L +WN+II GFA+++   E + L+++M++ G   ++ T 
Sbjct: 300 YAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTF 359

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDA 325
           +S+L  C    L+E G +    +++  + L  N    + ++D+  + G L +A
Sbjct: 360 SSLLSVCGHTGLVEEGRRF-FKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEA 411



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 101/238 (42%), Gaps = 31/238 (13%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           +   ++   A+      Q   +  +  T + +I  C    A+ E K +H  +   GF   
Sbjct: 230 YVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSN 289

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F+ +  ++M+ K   L E+ ++F ++ E+N+  W T+IS +       + + L   M +
Sbjct: 290 VFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQ 349

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIK------------VGFESDVFVRSALIDI 216
           +G+ PN  T+S++L  C         H G+++             G   +V   S ++DI
Sbjct: 350 DGMHPNEVTFSSLLSVCG--------HTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDI 401

Query: 217 YAKLGELRNAECVFNEMPTRDLV-VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
             + G L  A  +   +P      +W S++           +  +YK ++ A  AA++
Sbjct: 402 LGRAGLLSEAYELIKSIPFDPTASIWGSLLA----------SCRVYKNLELAEVAAEK 449


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/578 (40%), Positives = 350/578 (60%), Gaps = 22/578 (3%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL------LEEAQVLFD 133
           L++ C +  +  + K +H   +  G  P+    N   N H+ F+L      +  A  +F+
Sbjct: 40  LVQLCGSSQS--KLKQIHAFSIRHGVPPQ----NPDFNKHLIFALVSLSAPMSFAAQIFN 93

Query: 134 QMPERNVVSWTTMISAYCDAKMNDKALELLIFM-LREGVRPNMFTYSAVLRACDSLI--- 189
           Q+   N+ +W TMI  + +++    A+EL   M     + P+  T+  + +A   L+   
Sbjct: 94  QIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVS 153

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           +   +H  +++ GF+S  FV+++L+ +Y+ LG L +A  VF  M  RD V WNS+I GFA
Sbjct: 154 LGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFA 213

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN 309
            N   +EAL LY+ M   G   D  T+ S+L AC  L  L LG +VH++++K    L+ N
Sbjct: 214 LNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVG--LVQN 271

Query: 310 ----NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
               NALLD+Y KCG+  DA  VF  M ++ V+SW+++I GLA NG   EALKLF  ++ 
Sbjct: 272 QHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELER 331

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
             +KP+ IT VGVL+ACSH G +++G+N+F+ MK+ YGI P  EH+ CM+DLL RAGK+ 
Sbjct: 332 QGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVG 391

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           +A   I  MP  P+AV WR LLGAC +H + +L   A  +I  L+ +  G ++LLSN+YA
Sbjct: 392 DAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYA 451

Query: 486 NSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQ 545
           + ++W +V  VRK M  +G+ K PG S +E+  +++ F + D SHPQ ++    L  + Q
Sbjct: 452 SERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQ 511

Query: 546 KLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGD 605
            L   GY P T  VL D+E E+KE ++ +H+EK+AI F L++   G  IRI KNLR+C D
Sbjct: 512 LLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCAD 571

Query: 606 CHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           CH   KL +K+  + I++RD  R+HHF+DG+CSC DYW
Sbjct: 572 CHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 175/356 (49%), Gaps = 31/356 (8%)

Query: 12  TKPSSQARQ-FSLTITPPVASCNTITR------NSSSLLDDFTRFCYQRDLPRAMKAMHA 64
           + P S A Q F+    P + + NT+ R      N S  ++ F++             MHA
Sbjct: 82  SAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQ-------------MHA 128

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
                +  D+ T+  L K       V   + +H+ V+  GF+   F+ N L++M+     
Sbjct: 129 AS--SILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGS 186

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L  A  +F+ M  R+ V+W ++I+ +    M ++AL L   M  EGV P+ FT  ++L A
Sbjct: 187 LXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSA 246

Query: 185 C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C    +L +  ++H  ++KVG   +    +AL+D+Y+K G  R+A+ VF+EM  R +V W
Sbjct: 247 CVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSW 306

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            S+I G A N   +EAL L+  ++R G    + T   VL AC+   +L+ G   +   +K
Sbjct: 307 TSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFN-YFRRMK 365

Query: 302 YDHDLIL----NNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGY 352
            ++ ++     +  ++D+ C+ G + DA      M +  + + W T++     +G+
Sbjct: 366 EEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGH 421


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/599 (39%), Positives = 346/599 (57%), Gaps = 43/599 (7%)

Query: 88  HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMI 147
           ++++  K VH  +L  G + +++L+N +L     F     +  +F Q  E N+  + TMI
Sbjct: 21  NSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMI 80

Query: 148 SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFE 204
                     +++E+   M +EG+ P+ FT+  +L+AC  L+  +   +LH  ++K G E
Sbjct: 81  HGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCE 140

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTR---------------------------- 236
           SD FV ++L+ +Y K G + NA  VF+++P +                            
Sbjct: 141 SDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRA 200

Query: 237 ----------DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
                     D+V W+S+I G+A N    EAL+L+ +M   GF  D   +  VL AC  L
Sbjct: 201 CSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARL 260

Query: 287 ALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
             LELG      +   ++  + +L  AL+DMY KCG ++ A  VF  M +KD++ W+  I
Sbjct: 261 GALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAI 320

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI 404
           SGLA +G+ + A  LF  M+ S I+P+  T VG+L AC+HAG V++G  +F SM++ + +
Sbjct: 321 SGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTL 380

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAK 464
            P  EHY CM+DLLGRAG L EA +L+  MP E +A+ W ALLG C++HR+T L     K
Sbjct: 381 TPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLK 440

Query: 465 KILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFN 524
           +++ L+P + G Y+LLSNIY+ S KW++ A++R  M  RGI K PG SWIEV+  +H F 
Sbjct: 441 QLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFL 500

Query: 525 VADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFG 584
           V D+SHP  +KI   L  L++ L   GY P T+YVL D+E E+KE  I  HSEKLAI FG
Sbjct: 501 VGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFG 560

Query: 585 LMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L+S      IR+ KNLR+CGDCH   K  ++   + I++RD  R+H F DG+CSC DYW
Sbjct: 561 LISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 154/343 (44%), Gaps = 61/343 (17%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            +++  H+M+  G+  DS T+  L+K C      +    +H  V+  G E + F+   L+
Sbjct: 91  ESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLV 150

Query: 117 NMHVKFSLLEEAQVLFDQMPERNV------------------------------------ 140
           +++ K   ++ A  +FD +PE+NV                                    
Sbjct: 151 SLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEK 210

Query: 141 --VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGI 198
             VSW++MI  Y    +  +AL+L   ML EG RP+ +    VL AC  L        G 
Sbjct: 211 DIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARL--------GA 262

Query: 199 IKVG-----------FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           +++G           F  +  + +ALID+YAK G + +A  VF  M  +D+VVWN+ I G
Sbjct: 263 LELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISG 322

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH---VHVLKYDH 304
            A +  V  A  L+ +M+++G   D +T   +L ACT   L++ G Q       V     
Sbjct: 323 LAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTP 382

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
           ++     ++D+  + G L++A  +   M ++ + I W  ++ G
Sbjct: 383 EIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGG 425


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/549 (41%), Positives = 344/549 (62%), Gaps = 7/549 (1%)

Query: 102 SGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALE 161
           S GF+ E F+ + L +M+ K  LL EA  +FDQMP+++ V+WT MI  Y      + A+ 
Sbjct: 299 SVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVL 358

Query: 162 LLIFMLREG-VRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIY 217
               M REG V  +   + +VL A   L    + + +HC + K GFE +V VR+ALID+Y
Sbjct: 359 SFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMY 418

Query: 218 AKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           AK  ++ +A  V    P   ++V   S+I G+ +   V+EAL +Y  ++R G   ++ T 
Sbjct: 419 AKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTF 478

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
           +S+++ C   ALLE G Q+H  V+K D   D  + + L+DMY KCG +  +M +F+ +  
Sbjct: 479 SSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEY 538

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
           +  I+W+ +I+  AQ+G+ +EA++ F+ M  S I+PN+I  V +L ACSHAG V++G  +
Sbjct: 539 RTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKY 598

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR 454
           F SMK+ +GI+P  EHYSC+ID  GRAG+L EA K I EMP +P+A  W +LLGAC++  
Sbjct: 599 FYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRG 658

Query: 455 NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWI 514
           + +L   AA+ ++ L+P + G ++ LS IYA+  +W++V  VRK MR   I K PG SW+
Sbjct: 659 SKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWV 718

Query: 515 EVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQY 574
           + NK+ H F   D SHPQ   I + L+ L  ++   GY PDT+++  +LE   KE  ++Y
Sbjct: 719 DSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRY 778

Query: 575 HSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQD 634
           HSE++A+ F L+S+   K I ++KNLRIC DCHT  K   K+E + I++RD  R+HHF +
Sbjct: 779 HSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVN 838

Query: 635 GNCSCGDYW 643
           G CSCGDYW
Sbjct: 839 GRCSCGDYW 847



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 130/410 (31%), Positives = 210/410 (51%), Gaps = 23/410 (5%)

Query: 72  ADSVTYAELIKCCLARHAVEEAKLVHNH-VLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           A +V  A L++ C     +   +L+H   VLSG     TFL N L+ M+   + L  A  
Sbjct: 168 ATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALR 227

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           LF  MP RN VSWTT++S      M+  AL     M R GV P  F  S+  RA  +L  
Sbjct: 228 LFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGA 287

Query: 191 LRQLH--CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
             +         VGF++++FV S L D+Y+K G L  A  VF++MP +D V W ++I G+
Sbjct: 288 PLRARSCTASASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGY 347

Query: 249 AQNSDVDEALNLYKRMKRAGF-AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHD 305
           A+N  ++ A+  ++ MKR G   ADQ    SVL A  GL    L   +H  V K  ++ +
Sbjct: 348 AKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELE 407

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKD-----VISWSTMISGLAQNGYSQEALKLF 360
           + + NAL+DMY K   +E A    SR+++ D     V+S ++MI G  +    +EAL ++
Sbjct: 408 VAVRNALIDMYAKSMDVESA----SRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIY 463

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHY--SCMIDL 417
             ++   ++PN  T   ++  C+    +E G   H + +K     D  R+ +  S ++D+
Sbjct: 464 VELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIK----TDLIRDSFVGSTLVDM 519

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            G+ G +  +++L +E+ Y  D + W A++     H +   AI A  +++
Sbjct: 520 YGKCGLISLSMQLFNEIEYRTD-IAWNAVINVFAQHGHGREAIQAFDRMI 568



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 164/387 (42%), Gaps = 80/387 (20%)

Query: 72  ADSVTYAELIKCCLARHAVEEAKLVHNH-VLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           A +V  A L++ C     +   +L+H   VLSG     TFL N L+ M+   + L  A  
Sbjct: 18  ATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALR 77

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTY------------ 178
           LF  MP RN VSWTT++S      M+  AL     M R GV P    Y            
Sbjct: 78  LFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKH 137

Query: 179 ------------------------------------SAVLRACDSLIILRQ---LHCGII 199
                                               +++L++C     LR+   LH  ++
Sbjct: 138 TLAASHCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLV 197

Query: 200 KVG-FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEAL 258
             G   +  F+ + LI +Y+   +L +A  +F  MP R+ V W +++ G +QN    +AL
Sbjct: 198 LSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADAL 257

Query: 259 NLYKRMKRAGFAADQ------------STLTSVLRACTGLALLELGTQVHVHVLKYDHDL 306
             +  M+RAG A  +                   R+CT  A            + +D +L
Sbjct: 258 AAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTASA-----------SVGFDTEL 306

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
            + + L DMY KCG L +A  VF +M QKD ++W+ MI G A+NG  + A+  F  MK  
Sbjct: 307 FVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKRE 366

Query: 367 R-IKPNYITIVGVLFACSHAGFVEDGW 392
             +  +      VL   S +G ++DGW
Sbjct: 367 GLVGADQHVFCSVL---SASGGLKDGW 390



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 16/178 (8%)

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVL---KYDHDLILNNALLDMYCKCGSLEDAM 326
           AA    L S+L++C     L  G  +H  ++          L N L+ MY  C  L  A+
Sbjct: 17  AATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASAL 76

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN---YITIVGVLFACS 383
            +F+ M +++ +SW+T++SGL+QN    +AL  F +M+ + + P    Y T         
Sbjct: 77  RLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPK 136

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGRE---------HYSCMIDLLGRAGKLQEAVKLIH 432
           H        +    M K++G    R          H + ++   GRAG L+   +L+H
Sbjct: 137 HTLAASHCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRG-RLLH 193


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/547 (41%), Positives = 343/547 (62%), Gaps = 7/547 (1%)

Query: 104 GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL 163
           GF+ E F+ + L +M+ K  LL EA  +FDQMP+++ V+WT MI  Y      + A+   
Sbjct: 149 GFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAF 208

Query: 164 IFMLREG-VRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
             M REG V  +     +VL A   L    + R +H  ++K GFE +V VR+AL D+YAK
Sbjct: 209 RDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAK 268

Query: 220 LGELRNAECVFN-EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278
             ++ NA  V   +  + ++V   S+I G+ +   +++AL ++  ++R G   ++ T +S
Sbjct: 269 AADMDNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSS 328

Query: 279 VLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD 336
           +++ C   ALLE G Q+H  V+K     D  +++ LLDMY KCG +  ++ +F  +    
Sbjct: 329 MIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHT 388

Query: 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
            I+W+  I+ LAQ+G+ +EA++ F+ M  S I+PN+IT V +L ACSHAG V++G  +F 
Sbjct: 389 DIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFY 448

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
           SMK  +GI+P  EHYSC+ID+ GRAG+L EA K I EMP +P+A  W +LLGAC++  N 
Sbjct: 449 SMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNK 508

Query: 457 DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEV 516
           +L   AA  ++ L+P + G ++ LS IYA+  +W++V  VRK MR   I K PG SW++ 
Sbjct: 509 ELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDS 568

Query: 517 NKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHS 576
           NK+ H F   D SHPQ +KI + L+ L +++   GY PDT ++  +LE   K+  ++YHS
Sbjct: 569 NKKTHVFGSEDWSHPQQEKIYEKLEELYERIKEEGYVPDTRFLPCNLEDTAKQRILRYHS 628

Query: 577 EKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGN 636
           E++A+ F L+S+   K I ++KNLRIC DCH+  K  +K+EN+ I++RD  R+HHF  G 
Sbjct: 629 ERIAVAFALISMPATKPIIVKKNLRICADCHSALKFISKVENRDIIVRDNSRFHHFVKGG 688

Query: 637 CSCGDYW 643
           CSCGDYW
Sbjct: 689 CSCGDYW 695



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 117/379 (30%), Positives = 198/379 (52%), Gaps = 19/379 (5%)

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           VLSG     TFL N L+ M+   + +  A  LFD MP  N+VSWTT++S      M+  A
Sbjct: 44  VLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPNLVSWTTLVSGLTQNSMHRDA 103

Query: 160 LELLIFMLREGVRPNMF---TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDI 216
           L     M R G+ P  F   + +    A  +     QLHC  +++GF++++FV S L D+
Sbjct: 104 LAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVASNLADM 163

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF-AADQST 275
           Y+K G L  A  VF++MP +D V W ++I G+A+N +++ A+  ++ M+R G   ADQ  
Sbjct: 164 YSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHV 223

Query: 276 LTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
           L SVL A  GL    L   +H  V+K  ++ ++ + NAL DMY K   +++A    +R++
Sbjct: 224 LCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNA----ARVV 279

Query: 334 QKD-----VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           + D     V+S +++I G  +    ++AL +F  ++   ++PN  T   ++  C+    +
Sbjct: 280 KIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALL 339

Query: 389 EDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           E G   H + +K     D      S ++D+ G+ G +  +++L  E+ Y  D + W A +
Sbjct: 340 EQGAQLHAEVIKTSLISDSFVS--STLLDMYGKCGLISLSIQLFKEIEYHTD-IAWNAAI 396

Query: 448 GACKVHRNTDLAICAAKKI 466
                H +   AI A  ++
Sbjct: 397 NVLAQHGHGREAIRAFDRM 415


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 244/634 (38%), Positives = 356/634 (56%), Gaps = 49/634 (7%)

Query: 56  PRAMKAMH---AMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
           P    ++H    M   G+  +S T+  L K C    A  EAK +H H L         + 
Sbjct: 106 PTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVH 165

Query: 113 NILLNMH---------------------VKFSLL----------EEAQVLFDQMPERNVV 141
             L++M+                     V F+ L          ++A+ LFD++P ++VV
Sbjct: 166 TSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVV 225

Query: 142 SWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCG---- 197
           SW  MI+ Y  +   ++AL     M    V PN  T  +VL AC  L   R L  G    
Sbjct: 226 SWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHL---RSLELGKWIG 282

Query: 198 --IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
             +   GF  ++ + +AL+D+Y+K GE+  A  +F+ M  +D+++WN++IGG+   S  +
Sbjct: 283 SWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYE 342

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY------DHDLILN 309
           EAL L++ M R     +  T  +VL AC  L  L+LG  VH ++ K        +++ L 
Sbjct: 343 EALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLW 402

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
            +++ MY KCG +E A  VF  M  + + SW+ MISGLA NG+++ AL LFE M     +
Sbjct: 403 TSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQ 462

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           P+ IT VGVL AC+ AGFVE G  +F SM K YGI P  +HY CMIDLL R+GK  EA  
Sbjct: 463 PDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKV 522

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489
           L+  M  EPD   W +LL AC++H   +     A+++  L+P++ G Y+LLSNIYA + +
Sbjct: 523 LMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGR 582

Query: 490 WDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549
           WD+VA++R  +  +G+ K PGC+ IE++  +H F V D  HPQ + I + L  + + L  
Sbjct: 583 WDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEE 642

Query: 550 VGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
            G+ PDT+ VL D++ E KE ++  HSEKLAI FGL+S   G TIRI KNLR+C +CH+ 
Sbjct: 643 TGFVPDTSEVLYDMDEEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSA 702

Query: 610 AKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KL +K+ N+ I+ RD  R+HHF+DG CSC D W
Sbjct: 703 TKLISKIFNREIIARDRNRFHHFKDGFCSCNDRW 736



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/439 (28%), Positives = 192/439 (43%), Gaps = 77/439 (17%)

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLH 195
           N+  W T+I A+        +L L   ML  G+ PN  T+ ++ ++C    +    +QLH
Sbjct: 91  NIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLH 150

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECV-------------------------- 229
              +K+       V ++LI +Y+++GELR+A  V                          
Sbjct: 151 AHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVD 210

Query: 230 -----FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
                F+E+P +D+V WN++I G+ Q+   +EAL  + RM+ A  + +QST+ SVL AC 
Sbjct: 211 DARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACG 270

Query: 285 GLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            L  LELG  +   V    +  +L L NAL+DMY KCG +  A  +F  M  KDVI W+T
Sbjct: 271 HLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNT 330

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKF 401
           MI G       +EAL LFE M    + PN +T + VL AC+  G ++ G W H    K  
Sbjct: 331 MIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNL 390

Query: 402 YGI---------------------------------DPGREHYSCMIDLLGRAGKLQEAV 428
            G                                        ++ MI  L   G  + A+
Sbjct: 391 KGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERAL 450

Query: 429 KLIHEM---PYEPDAVTWRALLGACKVHRNTDLA---ICAAKKILNLDPQDPGTYILLSN 482
            L  EM    ++PD +T+  +L AC      +L      +  K   + P+    Y  + +
Sbjct: 451 GLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPK-LQHYGCMID 509

Query: 483 IYANSQKWDEVAEVRKTMR 501
           + A S K+DE   +   M 
Sbjct: 510 LLARSGKFDEAKVLMGNME 528



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 138/307 (44%), Gaps = 41/307 (13%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTR-- 236
           +L  C  +  L+Q+H  IIK G  + +F +S LI+  A     +L  A  +F+ +  +  
Sbjct: 31  LLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPP 90

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           ++ +WN++I   +       +L+L+ +M  +G   +  T  S+ ++C          Q+H
Sbjct: 91  NIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLH 150

Query: 297 VHVLK-----------------------------YD----HDLILNNALLDMYCKCGSLE 323
            H LK                             +D     D +   AL+  Y   G ++
Sbjct: 151 AHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVD 210

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
           DA  +F  +  KDV+SW+ MI+G  Q+G  +EAL  F  M+ + + PN  T+V VL AC 
Sbjct: 211 DARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACG 270

Query: 384 HAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
           H   +E G W    S  +  G     +  + ++D+  + G++  A KL   M  + D + 
Sbjct: 271 HLRSLELGKW--IGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGME-DKDVIL 327

Query: 443 WRALLGA 449
           W  ++G 
Sbjct: 328 WNTMIGG 334



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 9/206 (4%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHV---LSG-G 104
           +C+      A+     M    V  + VT+  ++  C +  A++  K VH ++   L G G
Sbjct: 335 YCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTG 394

Query: 105 FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
                 L   ++ M+ K   +E A+ +F  M  R++ SW  MIS        ++AL L  
Sbjct: 395 NVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFE 454

Query: 165 FMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKV----GFESDVFVRSALIDIYAKL 220
            M+ EG +P+  T+  VL AC     +   H     +    G    +     +ID+ A+ 
Sbjct: 455 EMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARS 514

Query: 221 GELRNAECVFNEMPTR-DLVVWNSII 245
           G+   A+ +   M    D  +W S++
Sbjct: 515 GKFDEAKVLMGNMEMEPDGAIWGSLL 540


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/559 (40%), Positives = 342/559 (61%), Gaps = 6/559 (1%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           ++   + +H  V       + F+ + L+  + K    E+A  LFD MP +++VSW ++IS
Sbjct: 54  SISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLIS 113

Query: 149 AYCDA-KMNDKALELLIFMLREGVRPNMFTYSAVLRACD-SLIILRQLHCGIIKVGFESD 206
            +     M+  A   + F +   V+PN  T  +++ AC  +L   + +H   IKVG   +
Sbjct: 114 GFSRCLHMSLTAFYTMKFEMS--VKPNEVTILSMISACSGALDAGKYIHGFGIKVGGTLE 171

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
           V V ++LI++Y K G+L +A  +F  +P  + V WNSII     N    E ++ + +M+R
Sbjct: 172 VKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRR 231

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLED 324
            G   D+ T+ ++L+AC  L + +L   +H  +    +   + +  ALLD Y K G L  
Sbjct: 232 LGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSA 291

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           +  VF+ +   D ++W+ M++G A +G  +EA+KLFESM    ++P+++T   +L ACSH
Sbjct: 292 SYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSH 351

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           +G V +G ++F  M + YGI+P  +HYSCM+DLLGR G L +A ++I  MP EP+A  W 
Sbjct: 352 SGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWG 411

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
           ALLGAC+VH N +L    A+ ++N++P DP  YI+LSN+Y+ S+ W + A+VR  ++ RG
Sbjct: 412 ALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERG 471

Query: 505 ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLE 564
           + + PG S IE   + H F V D SHP+ +KI   L+ L+ K+   GY+  T YVLQD+E
Sbjct: 472 LKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVE 531

Query: 565 GEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIR 624
            E KED I  HSEKLAI FGL+   +G+ + I KNLRICGDCH+ AKL + +E +TI+IR
Sbjct: 532 EEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIR 591

Query: 625 DPIRYHHFQDGNCSCGDYW 643
           DP R+HHF DG CSC DYW
Sbjct: 592 DPKRFHHFSDGFCSCADYW 610



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 106/254 (41%), Gaps = 31/254 (12%)

Query: 15  SSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADS 74
           +S  R F     P   S N+I      +    T  C +      +   + M+  G+  D 
Sbjct: 189 TSACRLFEAIPDPNTVSWNSI------IAAQVTNGCARE----GIDYFNKMRRLGIEQDE 238

Query: 75  VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ 134
            T   L++ CL     + A+ +H  +   GF  +  +   LL+ + K   L  +  +F +
Sbjct: 239 GTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTE 298

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQL 194
           +   + V+WT M++ Y    +  +A++L   M  +G+ P+  T++ +L AC         
Sbjct: 299 VGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACS-------- 350

Query: 195 HCGIIK------------VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVW 241
           H G++              G E  V   S ++D+  + G L +A  V   MP   +  VW
Sbjct: 351 HSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVW 410

Query: 242 NSIIGGFAQNSDVD 255
            +++G    + +++
Sbjct: 411 GALLGACRVHGNIE 424


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/584 (38%), Positives = 358/584 (61%), Gaps = 8/584 (1%)

Query: 68  HGVRA-DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLE 126
           +G+RA DSVT   L+  C           +H++ +  G E E F+ N L++++ +F  L 
Sbjct: 240 NGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLR 299

Query: 127 EAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTY---SAVLR 183
           + Q +FD+M  R+++SW ++I AY   +   +A+ L   M    ++P+  T    +++L 
Sbjct: 300 DCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILS 359

Query: 184 ACDSLIILRQLHCGIIKVG-FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
               +   R +    ++ G F  D+ + +A++ +YAKLG + +A  VFN +P  D++ WN
Sbjct: 360 QLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWN 419

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAG-FAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           +II G+AQN    EA+ +Y  M+  G  AA+Q T  SVL AC+    L  G ++H  +LK
Sbjct: 420 TIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLK 479

Query: 302 YDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
                D+ +  +L DMY KCG LEDA+S+F ++ + + + W+T+I+    +G+ ++A+ L
Sbjct: 480 NGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVML 539

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F+ M    +KP++IT V +L ACSH+G V++G   F+ M+  YGI P  +HY CM+D+ G
Sbjct: 540 FKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYG 599

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           RAG+L+ A+K I  M  +PDA  W ALL AC+VH N DL   A++ +  ++P+  G ++L
Sbjct: 600 RAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVL 659

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LSN+YA++ KW+ V E+R     +G+ K PG S +EV+ ++  F   + +HP  +++ + 
Sbjct: 660 LSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRE 719

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
           L  L  KL  +GY PD  +VLQD+E ++KE  +  HSE+LAI F L++     TIRI KN
Sbjct: 720 LTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKN 779

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           LR+CGDCH+  K  +K+  + I++RD  R+HHF++G CSCGDYW
Sbjct: 780 LRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 242/462 (52%), Gaps = 27/462 (5%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   G+  D  T+  ++K C     V +   +H   L  GF  + ++   L++++ ++  
Sbjct: 144 MLSSGLTPDYRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKA 200

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP-NMFTYSAVLR 183
           +  A++LFD+MP R++ SW  MIS YC +    +AL      L  G+R  +  T  ++L 
Sbjct: 201 VGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL-----TLSNGLRAMDSVTVVSLLS 255

Query: 184 ACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           AC       +   +H   IK G ES++FV + LID+YA+ G LR+ + VF+ M  RDL+ 
Sbjct: 256 ACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLIS 315

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           WNSII  +  N     A++L++ M+ +    D  TL S+    + L  +     V    L
Sbjct: 316 WNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTL 375

Query: 301 K---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           +   +  D+ + NA++ MY K G ++ A +VF+ +   DVISW+T+ISG AQNG++ EA+
Sbjct: 376 RKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAI 435

Query: 358 KLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMI 415
           +++  M +   I  N  T V VL ACS AG +  G   H + +K    +D      + + 
Sbjct: 436 EMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFV--VTSLA 493

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN--LDPQD 473
           D+ G+ G+L++A+ L +++P   ++V W  L+     H + + A+   K++L+  + P D
Sbjct: 494 DMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKP-D 551

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRA-RGIT---KEPGC 511
             T++ L +  ++S   DE     + M+   GIT   K  GC
Sbjct: 552 HITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGC 593



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/275 (33%), Positives = 159/275 (57%), Gaps = 7/275 (2%)

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL-IFMLREGVRP 173
           L+N++     +  A+  FD +  R+V +W  MIS Y  A  + + +    +FML  G+ P
Sbjct: 92  LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTP 151

Query: 174 NMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           +  T+ +VL+AC ++I   ++HC  +K GF  DV+V ++LI +Y++   + NA  +F+EM
Sbjct: 152 DYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEM 211

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           P RD+  WN++I G+ Q+ +  EAL L   ++    A D  T+ S+L ACT       G 
Sbjct: 212 PVRDMGSWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGV 267

Query: 294 QVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
            +H + +K+  + +L ++N L+D+Y + G L D   VF RM  +D+ISW+++I     N 
Sbjct: 268 TIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNE 327

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
               A+ LF+ M++SRI+P+ +T++ +    S  G
Sbjct: 328 QPLRAISLFQEMRLSRIQPDCLTLISLASILSQLG 362



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 166/335 (49%), Gaps = 21/335 (6%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           + R C +L   + LH  ++      +V + + L+++Y  LG +  A   F+ +  RD+  
Sbjct: 60  LFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYA 119

Query: 241 WNSIIGGFAQNSDVDEALNLYKR-MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
           WN +I G+ +  +  E +  +   M  +G   D  T  SVL+AC  +     G ++H   
Sbjct: 120 WNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVI---DGNKIHCLA 176

Query: 300 LKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           LK+    D+ +  +L+ +Y +  ++ +A  +F  M  +D+ SW+ MISG  Q+G ++EAL
Sbjct: 177 LKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL 236

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMID 416
            L   ++      + +T+V +L AC+ AG    G   H  S+K  +G++      + +ID
Sbjct: 237 TLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIK--HGLESELFVSNKLID 290

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI-LNLDPQDPG 475
           L    G+L++  K+   M Y  D ++W +++ A +++     AI   +++ L+    D  
Sbjct: 291 LYAEFGRLRDCQKVFDRM-YVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCL 349

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
           T I L++I +      ++ ++R     +G T   G
Sbjct: 350 TLISLASILS------QLGDIRACRSVQGFTLRKG 378


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/582 (40%), Positives = 342/582 (58%), Gaps = 25/582 (4%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLE--------EAQVL 131
           L++  LA  ++  AK +H   L     P     + LL  H+ F L             VL
Sbjct: 24  LLRLHLASPSLATAKQLHARALRAA--PGVTPSHPLLAKHLLFHLAALKAPPLRYAVAVL 81

Query: 132 FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL 191
              +P  +  S  T++  +  +     AL L     R    P+  TY  +L+AC  L+ L
Sbjct: 82  SGLLPSPDPFSLNTVLRIFASSARPRVALAL---HRRHLAPPDTHTYPPLLQACARLLAL 138

Query: 192 R---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT--RDLVVWNSIIG 246
           R    LH    K G  S VFV+++L+ +Y   G   +A  VF+E+P   R+LV WNS++ 
Sbjct: 139 RYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLN 198

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL 306
           GFA N   +E L +++ M    FA D  T+ SVL AC  + +L LG +VHV V K    L
Sbjct: 199 GFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVG--L 256

Query: 307 ILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFE 361
           + N    NAL+D+Y KCG ++DA  +F  M + + V+SW+++I GLA NG+  +AL+LF 
Sbjct: 257 VGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFS 316

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            M+  ++ P  IT+VGVL+ACSH G V+DG+ +F  MK  YGI P  EH  CM+DLLGRA
Sbjct: 317 MMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRA 376

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           G+++EA   I  MP EP+AV WR LLGAC +H+  ++   A  +++ LDP   G Y+LLS
Sbjct: 377 GRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYVLLS 436

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
           N+YA   +W +V  +RKTM   G+ K PG S +E+   ++ F + D SHP+ D+I + L 
Sbjct: 437 NLYAGVGRWADVHVLRKTMVTHGVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLG 496

Query: 542 HLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
            + ++L   GY P T+ VL D+E E+KE ++ YHSE+LAI F L+    G  IRI KNLR
Sbjct: 497 DIAERLRRQGYIPHTSNVLADIEDEEKESALNYHSERLAIAFALLKSLPGTPIRIVKNLR 556

Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +CGDCH   KL +K+ ++ I++RD  R+HHF+ G CSC DYW
Sbjct: 557 VCGDCHMAIKLISKVYDREIIVRDRSRFHHFKGGACSCKDYW 598


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/587 (38%), Positives = 365/587 (62%), Gaps = 15/587 (2%)

Query: 69  GVRA-DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           G+RA DSVT   L+  C           +H++ +  G E E F+ N L++++ +F  L++
Sbjct: 241 GLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKD 300

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALE-LLIF--MLREGVRPNMFTY---SAV 181
            Q +FD+M  R+++SW ++I AY   ++N++ L  +L+F  M    ++P+  T    +++
Sbjct: 301 CQKVFDRMYVRDLISWNSIIKAY---ELNEQPLRAILLFQEMRLSRIQPDCLTLISLASI 357

Query: 182 LRACDSLIILRQLHCGIIKVG-FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           L     +   R +    ++ G F  D+ + +A++ +YAKLG + +A  VFN +P +D++ 
Sbjct: 358 LSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVIS 417

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAG--FAADQSTLTSVLRACTGLALLELGTQVHVH 298
           WN+II G+AQN    EA+ +Y  M+  G   +A+Q T  SVL AC+    L  G ++H  
Sbjct: 418 WNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGR 477

Query: 299 VLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           +LK     D+ +  +L DMY KCG L+DA+S+F ++ + + + W+T+I+    +G+ ++A
Sbjct: 478 LLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKA 537

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           + LF+ M    +KP++IT V +L ACSH+G V++G   F+ M+  YGI P  +HY CM+D
Sbjct: 538 VMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVD 597

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476
           L GRAG+L+ A+  I  MP +PDA  W ALL AC+VH N DL   A++ +  ++P+  G 
Sbjct: 598 LYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGY 657

Query: 477 YILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKI 536
           ++LLSN+YA++ KW+ V E+R     +G+ K PG S +EV+ ++  F   + +HP  +++
Sbjct: 658 HVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEM 717

Query: 537 NKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRI 596
            + L  L +KL  VGY PD  +VLQD+E ++KE  +  HSE+LA+ F L++     TIRI
Sbjct: 718 YRELTALHEKLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAMAFALITTPAKTTIRI 777

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KNLR+CGDCH+  K  +K+  + I++RD  R+HHF++G CSCGDYW
Sbjct: 778 FKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 171/300 (57%), Gaps = 7/300 (2%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
           ++ AK +H  ++         +   L+N++     +  A+  FD +  R+V +W  MIS 
Sbjct: 67  LQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISG 126

Query: 150 YCDAKMNDKALELL-IFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVF 208
           Y  A  + + +    +FML  G++P+  T+ +VL+AC ++    ++HC  +K GF  DV+
Sbjct: 127 YGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNKIHCLALKFGFMWDVY 186

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           V ++LI +Y + G + NA  +F+EMPTRD+  WN++I G+ Q+ +  EAL L   ++   
Sbjct: 187 VAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLR--- 243

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAM 326
            A D  T+ S+L ACT       G  +H + +K+  + +L ++N L+D+Y + GSL+D  
Sbjct: 244 -AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQ 302

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            VF RM  +D+ISW+++I     N     A+ LF+ M++SRI+P+ +T++ +    S  G
Sbjct: 303 KVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLG 362



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 171/337 (50%), Gaps = 25/337 (7%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           + R C +L   + LH  ++      +V + + L+++Y  LG +  A   F+ +  RD+  
Sbjct: 60  LFRYCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYA 119

Query: 241 WNSIIGGFAQ---NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           WN +I G+ +   +S+V    +L+  M  +G   D  T  SVL+AC  +     G ++H 
Sbjct: 120 WNLMISGYGRAGYSSEVIRCFSLF--MLSSGLQPDYRTFPSVLKACRNVT---DGNKIHC 174

Query: 298 HVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
             LK+    D+ +  +L+ +YC+ G++ +A  +F  M  +D+ SW+ MISG  Q+G ++E
Sbjct: 175 LALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKE 234

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCM 414
           AL L + ++      + +T+V +L AC+ AG    G   H  S+K  +G++      + +
Sbjct: 235 ALTLSDGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIK--HGLESELFVSNKL 288

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI-LNLDPQD 473
           IDL    G L++  K+   M Y  D ++W +++ A +++     AI   +++ L+    D
Sbjct: 289 IDLYAEFGSLKDCQKVFDRM-YVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPD 347

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
             T I L++I +      ++ E+R     +G T   G
Sbjct: 348 CLTLISLASILS------QLGEIRACRSVQGFTLRKG 378


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/585 (38%), Positives = 352/585 (60%), Gaps = 6/585 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  GV  + +T   +       + + E K V+  V SG  E +  ++N  +NM     L
Sbjct: 197 MQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGL 256

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L +A+ LF+ M +R+VV+W  +I+ Y   +   +A+ L   + ++GV+ N  T+  +L  
Sbjct: 257 LGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNV 316

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
             SL  L   + +H  + + G++ D  V +AL+ +Y +      A  +F +M ++D++ W
Sbjct: 317 YTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITW 376

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL- 300
             +   +AQN    EAL L++ M+  G     +TL +VL  C  LA L+ G Q+H H++ 
Sbjct: 377 TVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIE 436

Query: 301 -KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
            ++  ++++  AL++MY KCG + +AMSVF +M ++D++ W++M+   AQ+GY  E L+L
Sbjct: 437 NRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQL 496

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F  M++  +K + ++ V VL A SH+G V DG+ +F +M + + I P  E Y C++DLLG
Sbjct: 497 FNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLG 556

Query: 420 RAGKLQEAVKLIHEMPY-EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
           RAG++QEAV ++ ++    PD + W  LLGAC+ H  TD A  AA+++L  DP   G Y+
Sbjct: 557 RAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYV 616

Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
           +LSN+YA +  WD V  +RK MR+RG+ KEPG S IE+  ++H F   D SHP+   I  
Sbjct: 617 VLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYA 676

Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRK 598
            L  L  ++   GY PDT  +L D+E E+KED + YHSE+LAI FGL+S   G  +R+ K
Sbjct: 677 ELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLISTPPGTPLRVIK 736

Query: 599 NLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           NLR+C DCHT  K  +K+  + I++RD  R+H+F+DG CSC DYW
Sbjct: 737 NLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/415 (30%), Positives = 212/415 (51%), Gaps = 9/415 (2%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           +C Q D  RA+   + MQ   V    VTY  ++  C +  ++++   +H  +L  GFE +
Sbjct: 80  YCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGD 139

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F+   L+NM+ K   +  A   F ++  R+VVSWT MI+A         A  L   M  
Sbjct: 140 VFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQL 199

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQ--LHCGIIKVG-FESDVFVRSALIDIYAKLGELRN 225
           +GV PN  T   V  A      L +     G++  G  ESDV V ++ ++++   G L +
Sbjct: 200 DGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGD 259

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F +M  RD+V WN +I  + QN +  EA+ L+ R+++ G  A+  T   +L   T 
Sbjct: 260 ARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTS 319

Query: 286 LALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L  L  G  +H  V    YD D ++  AL+ +Y +C +   A  +F  M  KDVI+W+ M
Sbjct: 320 LTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVM 379

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFY 402
               AQNG+ +EAL+LF+ M++   +P   T+V VL  C+H   ++ G   H   ++  +
Sbjct: 380 CVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRF 439

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457
            ++   E  + +I++ G+ GK+ EA+ +  +M  + D + W ++LGA   H   D
Sbjct: 440 RMEMVVE--TALINMYGKCGKMAEAMSVFEKMA-KRDILVWNSMLGAYAQHGYYD 491



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 189/381 (49%), Gaps = 7/381 (1%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           + D+  +  L++ C +   V+  + VH HV   GFE    +   L+ M+ +   + EAQ 
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           +F+ +  ++V +WT MI  YC     D+AL +   M  E V P   TY A+L AC S   
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 191 LR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L+   ++H  I++ GFE DVFV +ALI++Y K G +R A   F  +  RD+V W ++I  
Sbjct: 121 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 180

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHD 305
             Q+     A  LY+RM+  G   ++ TL +V  A      L  G  V+  V     + D
Sbjct: 181 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESD 240

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           + + N+ ++M+   G L DA  +F  M+ +DV++W+ +I+   QN    EA++LF  ++ 
Sbjct: 241 VRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQ 300

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
             +K N IT V +L   +    +  G      + K  G D      + ++ L GR     
Sbjct: 301 DGVKANDITFVLMLNVYTSLTSLAKG-KVIHELVKEAGYDRDAVVATALMSLYGRCEAPG 359

Query: 426 EAVKLIHEMPYEPDAVTWRAL 446
           +A K+  +M    D +TW  +
Sbjct: 360 QAWKIFVDMG-SKDVITWTVM 379



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 191/392 (48%), Gaps = 18/392 (4%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           T +    +   A++    +Q  GV+A+ +T+  ++    +  ++ + K++H  V   G++
Sbjct: 280 TLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYD 339

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
            +  +   L++++ +     +A  +F  M  ++V++WT M  AY       +AL+L   M
Sbjct: 340 RDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEM 399

Query: 167 LREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
             EG RP   T  AVL  C  L  L   RQ+H  II+  F  ++ V +ALI++Y K G++
Sbjct: 400 QLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKM 459

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
             A  VF +M  RD++VWNS++G +AQ+   DE L L+ +M+  G  AD  +  SVL A 
Sbjct: 460 AEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSAL 519

Query: 284 TGLALLELGTQVHVHVLKYDHDLI----LNNALLDMYCKCGSLEDAMSVFSRMIQ--KDV 337
           +    +  G Q  V +L+ D  +     L   ++D+  + G +++A+ +  ++     D 
Sbjct: 520 SHSGSVTDGYQYFVAMLQ-DFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDG 578

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           I W T++     +  + +A    E  +V    P++     VL     A    DG N  + 
Sbjct: 579 ILWMTLLGACRTHNKTDQAKAAAE--QVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRK 636

Query: 398 MKKFYGI--DPGREHYSCMIDLLGRAGKLQEA 427
           + +  G+  +PGR      I++L R  +  E 
Sbjct: 637 LMRSRGVKKEPGRSS----IEILNRVHEFLEG 664



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 109/226 (48%), Gaps = 9/226 (3%)

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVF 329
           D +   ++L+ C+    ++ G +VH HV    ++ + ++   L+ MY +CGS+ +A  VF
Sbjct: 3   DTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVF 62

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
             + +KDV +W+ MI    Q G    AL +F  M+   + P  +T V +L AC+    ++
Sbjct: 63  EILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLK 122

Query: 390 DGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
           DG   H + +++  G +      + +I++  + G ++ A      + +  D V+W A++ 
Sbjct: 123 DGMEIHGQILQQ--GFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHR-DVVSWTAMIA 179

Query: 449 ACKVHRNTDLAICAAKKILNLDPQDPGTYILLS--NIYANSQKWDE 492
           AC  H    LA    ++ + LD   P    L +  N Y +     E
Sbjct: 180 ACVQHDQFALARWLYRR-MQLDGVVPNKITLYTVFNAYGDPNYLSE 224


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/592 (39%), Positives = 355/592 (59%), Gaps = 38/592 (6%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNM--HVKFSLLEEAQVLFDQMPERNVVSWTTMI 147
           +EE + +H  +L  G   +    + LL          L  A+ +FD++   N   W TMI
Sbjct: 31  MEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMI 90

Query: 148 SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII---LRQLHCGIIKVGFE 204
             Y ++K  ++AL L   ML   V  N +T+  +L+AC S+      +Q+H  IIK+GF 
Sbjct: 91  RGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFG 150

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD--------- 255
           S+++  ++L+++Y+K G++++A  +F+++  RD V WNS+I G+ +  +++         
Sbjct: 151 SEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHM 210

Query: 256 ----------------------EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
                                 EALNL+ RM+ AG   D   L S L+AC  L +L+ G 
Sbjct: 211 PERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGK 270

Query: 294 QVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
            +H ++ K++   D IL   L+DMY KCG LE+A+ VF +M +K V  W+ MISG A +G
Sbjct: 271 WIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHG 330

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
             +EAL+ F  M+ + ++PN +T  G+L ACSHAG V +    F+SM++ +G  P  EHY
Sbjct: 331 RGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHY 390

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
            CM+DLLGRAG L+EA +LI  MP +P+A  W ALL AC +H N +L     K ++ +DP
Sbjct: 391 GCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDP 450

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
              G YI L++I+A + +W++ A VR+ M+ +G++K PGCS I VN   H F   D SHP
Sbjct: 451 GHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHP 510

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
           QI +I+  L+ ++++L   GY P    +L DLE ++KE +I +HSEKLA+ FGL+S   G
Sbjct: 511 QIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPG 570

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            TIRI KNLR+C DCHT  KL +K+  + I++RD  R+H F+DGNC+CGDYW
Sbjct: 571 MTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 121/457 (26%), Positives = 199/457 (43%), Gaps = 76/457 (16%)

Query: 14  PSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD 73
           P+S +  ++ T+   +   NT   N+         +   ++   A+   H M  H V  +
Sbjct: 63  PNSGSLAYARTVFDRIFRPNTFMWNTM-----IRGYSNSKEPEEALLLYHHMLYHSVPHN 117

Query: 74  SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFD 133
           + T+  L+K C +  A EE + +H H++  GF  E +  N LLN++ K   ++ A++LFD
Sbjct: 118 AYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFD 177

Query: 134 QMPER-------------------------------NVVSWTTMISAYCDAKMNDKALEL 162
           Q+ +R                               N++SWT+MIS    A    +AL L
Sbjct: 178 QVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNL 237

Query: 163 LIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAK 219
              M   G++ +     + L+AC  L +L Q   +H  I K   E D  +   LID+YAK
Sbjct: 238 FHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAK 297

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
            G+L  A  VF +M  + + VW ++I G+A +    EAL  + +M+ AG   +Q T T +
Sbjct: 298 CGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGI 357

Query: 280 LRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
           L AC+   L      VH   L ++                 S+E          +  +  
Sbjct: 358 LTACSHAGL------VHEAKLLFE-----------------SMERIHG-----FKPSIEH 389

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           +  M+  L + G  +EA +L E+M V   KPN      +L AC   G +E G    K + 
Sbjct: 390 YGCMVDLLGRAGLLKEAEELIENMPV---KPNAAIWGALLNACHIHGNLELG----KQIG 442

Query: 400 K-FYGIDPGR-EHYSCMIDLLGRAGKLQEAVKLIHEM 434
           K    +DPG    Y  +  +   AG+  +A ++  +M
Sbjct: 443 KILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQM 479



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 151/310 (48%), Gaps = 41/310 (13%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKL--GELRNAECVFNEMPTRDL 238
           +L+ C ++  LRQ+H  ++K G   D    S L+   A    G L  A  VF+ +   + 
Sbjct: 24  LLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNT 83

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
            +WN++I G++ + + +EAL LY  M       +  T   +L+AC+ ++  E   Q+H H
Sbjct: 84  FMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAH 143

Query: 299 VLK-------YDHDLILN--------------------------NALLDMYCKCGSLEDA 325
           ++K       Y  + +LN                          N+++D Y KCG +E A
Sbjct: 144 IIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMA 203

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F+ M ++++ISW++MISG    G  +EAL LF  M+ + IK + + +V  L AC+  
Sbjct: 204 YEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADL 263

Query: 386 GFVEDG-WNHFKSMKKFYGIDPGREHYSC-MIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
           G ++ G W H    K    IDP      C +ID+  + G L+EA+++  +M  E     W
Sbjct: 264 GVLDQGKWIHAYIKKHEIEIDP---ILGCVLIDMYAKCGDLEEAIEVFRKME-EKGVSVW 319

Query: 444 RALLGACKVH 453
            A++    +H
Sbjct: 320 TAMISGYAIH 329


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/626 (35%), Positives = 369/626 (58%), Gaps = 29/626 (4%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL-SGGF 105
           + F        A+  +  M   GV+ D VT+A ++  C     +   K +H + L +   
Sbjct: 189 SSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDV 248

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
              +F+ + L++M+     +E  +++FD + +R +  W  MI+ Y  ++ ++KAL L I 
Sbjct: 249 IENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIE 308

Query: 166 M-LREGVRPNMFTYSAVLRA---CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
           M    G+  N  T S+++ A   C+ +     +H  +IK G E++ ++++ALID+Y+++G
Sbjct: 309 MEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMG 368

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR--------------- 266
           +++ ++ +F+ M  RD+V WN+II  +       +AL L   M+R               
Sbjct: 369 DIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEK 428

Query: 267 -AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLE 323
              F  +  TL +VL  C  L+ L  G ++H + ++      + + +AL+DMY KCG L 
Sbjct: 429 QVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLN 488

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM-----KVSRIKPNYITIVGV 378
            A  VF +M  ++VI+W+ +I     +G  +E+L+LFE M     K   +KP  +T + +
Sbjct: 489 LARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIAL 548

Query: 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP 438
             +CSH+G V++G + F  MK  +GI+P  +HY+C++DL+GRAGK++EA  L++ MP   
Sbjct: 549 FASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGF 608

Query: 439 DAV-TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497
           D V  W +LLGAC+++ N ++   AA+ +L L P     Y+LLSNIY+++  WD+   +R
Sbjct: 609 DKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLR 668

Query: 498 KTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTN 557
           + M+A G+ KEPGCSWIE   ++H F   D SHPQ +K++  L+ L ++L   GY PDT 
Sbjct: 669 RRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTA 728

Query: 558 YVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKME 617
            VL D++ E+KE  +  HSEKLAI FG+++   G TIR+ KNLR+C DCHT +K  +K+E
Sbjct: 729 CVLHDIDEEEKETILCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIE 788

Query: 618 NQTIVIRDPIRYHHFQDGNCSCGDYW 643
           ++ I++RD  R+HHF+DG CSCGDYW
Sbjct: 789 DREIILRDARRFHHFKDGTCSCGDYW 814



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 124/402 (30%), Positives = 202/402 (50%), Gaps = 37/402 (9%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV--NILLNMHVKFSLLE 126
           G   D+  +  ++K       +   K +H HV   G+   + +   N L+NM+ K   L 
Sbjct: 5   GFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLG 64

Query: 127 EAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC- 185
           +A  +FD++ ER+ VSW ++ISA C  +  + A++    ML EG  P+ FT  ++  AC 
Sbjct: 65  DAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACS 124

Query: 186 -----DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
                D L + +Q+H    + G     F  +AL+ +YAKLG L +A+ +      RDLV 
Sbjct: 125 NLRKRDGLWLGKQIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVT 183

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           WNS+I  F+QN    EAL   + M   G   D  T  SVL AC+ L LL  G ++H + L
Sbjct: 184 WNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYAL 243

Query: 301 KYDHDLILN----NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           + D D+I N    +AL+DMYC CG +E    VF  ++ + +  W+ MI+G AQ+ + ++A
Sbjct: 244 RTD-DVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKA 302

Query: 357 LKLFESMK-----------VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           L LF  M+           +S I P Y+   G+       G+V         +K+  G++
Sbjct: 303 LMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYV---------IKR--GLE 351

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
             R   + +ID+  R G ++ + ++   M  + D V+W  ++
Sbjct: 352 TNRYLQNALIDMYSRMGDIKTSKRIFDSME-DRDIVSWNTII 392



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 105/195 (53%), Gaps = 14/195 (7%)

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH----DLILNNALLDMYCKC 319
           M  +GF+ D     +VL+A  G+  L LG Q+H HV K+ +     + ++N L++MY KC
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 320 GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL 379
           G L DA  VF R+ ++D +SW+++IS L +    + A+K F  M +   +P+  T+V + 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 380 FACSHAGFVEDGWNHFKSMKKFYGIDPGREHY-----SCMIDLLGRAGKLQEAVKLIHEM 434
            ACS+    +  W      K+ +G    + H+     + ++ +  + G+L +A  L+  +
Sbjct: 121 LACSNLRKRDGLWLG----KQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLL-VL 175

Query: 435 PYEPDAVTWRALLGA 449
             + D VTW +++ +
Sbjct: 176 FEDRDLVTWNSMISS 190


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/627 (36%), Positives = 352/627 (56%), Gaps = 47/627 (7%)

Query: 19  RQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYA 78
           R F     P V   N I R           + +      A+   H+M   GVR +  TY 
Sbjct: 64  RLFDEIPNPSVILWNQIIR----------AYAWNGPFDGAIDLYHSMLHLGVRPNKYTYP 113

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
            ++K C    A+E+   +H+H    G E + F+   L++ + K  +L EAQ LF  M  R
Sbjct: 114 FVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR 173

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGI 198
           +VV+W  MI+      + D A++L++ M  EG+ PN  T   VL  C  L+  R+     
Sbjct: 174 DVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARK----- 228

Query: 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEAL 258
                                         +F+ M  R+ V W+++IGG+  +  + EAL
Sbjct: 229 ------------------------------IFDVMGVRNEVSWSAMIGGYVASDCMKEAL 258

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMY 316
           ++++ M+ +G   D +T+  VL AC+ LA L+ G   H +++   +  D ++ NAL+DMY
Sbjct: 259 DIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMY 318

Query: 317 CKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIV 376
            KCG +  A  VF+RM + D++SW+ MI G   +G   EAL LF  +    +KP+ IT +
Sbjct: 319 SKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFI 378

Query: 377 GVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY 436
            +L +CSH+G V +G   F +M + + I P  EH  CM+D+LGRAG + EA   I  MP+
Sbjct: 379 CLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPF 438

Query: 437 EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEV 496
           EPD   W ALL AC++H+N +L    +KKI +L P+  G ++LLSNIY+ + +WD+ A +
Sbjct: 439 EPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHI 498

Query: 497 RKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDT 556
           R T +  G+ K PGCSWIE+N  +HAF   D SH Q+ +IN+ L+ L+ ++  +GY  + 
Sbjct: 499 RITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAEC 558

Query: 557 NYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKM 616
           ++V QD+E E+KE  + YHSEKLAI FG+++L  G+ I + KNLR+CGDCHT  K    +
Sbjct: 559 SFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLI 618

Query: 617 ENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             + I +RD  R+HHF++G C+CGD+W
Sbjct: 619 TKREITVRDANRFHHFKNGTCNCGDFW 645



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 202/413 (48%), Gaps = 45/413 (10%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
            Y  L++ C+   ++ EAK +H H L      ++ +++ L  +++  + +  A+ LFD++
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEI 69

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR--- 192
           P  +V+ W  +I AY      D A++L   ML  GVRPN +TY  VL+AC  L+ +    
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGV 129

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           ++H      G ESDVFV +AL+D YAK G L  A+ +F+ M  RD+V WN++I G +   
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNAL 312
             D+A+ L  +M+  G   + ST+  VL  C  L                          
Sbjct: 190 LCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCL-------------------------- 223

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
             +Y        A  +F  M  ++ +SWS MI G   +   +EAL +F  M++S I P+ 
Sbjct: 224 --LY--------ARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDL 273

Query: 373 ITIVGVLFACSHAGFVEDGW-NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            T++GVL ACSH   ++ G+ +H   + + +  D      + +ID+  + GK+  A ++ 
Sbjct: 274 TTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDT--LICNALIDMYSKCGKISFAREVF 331

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI--LNLDPQDPGTYILLSN 482
           + M    D V+W A++    +H     A+     +  L L P D     LLS+
Sbjct: 332 NRMDRH-DIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSS 383


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/547 (41%), Positives = 343/547 (62%), Gaps = 7/547 (1%)

Query: 104 GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL 163
           GF+ E F+ + L +M+ K  LL EA  +FDQMP+++ V+WT MI  Y      + A+   
Sbjct: 152 GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSF 211

Query: 164 IFMLREG-VRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
             M REG V  +   + +VL A   L    + + +HC + K GFE +V VR+ALID+YAK
Sbjct: 212 RDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAK 271

Query: 220 LGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278
             ++ +A  V    P   ++V   S+I G+ +   V+EAL +Y  ++R G   ++ T +S
Sbjct: 272 SMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSS 331

Query: 279 VLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD 336
           +++ C   ALLE G Q+H  V+K D   D  + + L+DMY KCG +  +M +F+ +  + 
Sbjct: 332 MIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRT 391

Query: 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
            I+W+ +I+  AQ+G+ +EA++ F+ M  S I+PN+I  V +L ACSHAG V++G  +F 
Sbjct: 392 DIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFY 451

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
           SMK+ +GI+P  EHYSC+ID  GRAG+L EA K I EMP +P+A  W +LLGAC++  + 
Sbjct: 452 SMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSK 511

Query: 457 DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEV 516
           +L   AA+ ++ L+P + G ++ LS IYA+  +W++V  VRK MR   I K PG SW++ 
Sbjct: 512 ELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDS 571

Query: 517 NKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHS 576
           NK+ H F   D SHPQ   I + L+ L  ++   GY PDT+++  +LE   KE  ++YHS
Sbjct: 572 NKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHS 631

Query: 577 EKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGN 636
           E++A+ F L+S+   K I ++KNLRIC DCHT  K   K+E + I++RD  R+HHF +G 
Sbjct: 632 ERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGR 691

Query: 637 CSCGDYW 643
           CSCGDYW
Sbjct: 692 CSCGDYW 698



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 130/411 (31%), Positives = 214/411 (52%), Gaps = 24/411 (5%)

Query: 72  ADSVTYAELIKCCLARHAVEEAKLVHNH-VLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           A +V  A L++ C     +   +L+H   VLSG     TFL N L+ M+   + L  A  
Sbjct: 18  ATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALR 77

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF---TYSAVLRACDS 187
           LF  MP RN VSWTT++S      M+  AL     M R GV P  F   + +    A  +
Sbjct: 78  LFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGA 137

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
            +   QLHC  +++GF++++FV S L D+Y+K G L  A  VF++MP +D V W ++I G
Sbjct: 138 PLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDG 197

Query: 248 FAQNSDVDEALNLYKRMKRAGF-AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDH 304
           +A+N  ++ A+  ++ MKR G   ADQ    SVL A  GL    L   +H  V K  ++ 
Sbjct: 198 YAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFEL 257

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKD-----VISWSTMISGLAQNGYSQEALKL 359
           ++ + NAL+DMY K   +E A    SR+++ D     V+S ++MI G  +    +EAL +
Sbjct: 258 EVAVRNALIDMYAKSMDVESA----SRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVI 313

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHY--SCMID 416
           +  ++   ++PN  T   ++  C+    +E G   H + +K     D  R+ +  S ++D
Sbjct: 314 YVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIK----TDLIRDSFVGSTLVD 369

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
           + G+ G +  +++L +E+ Y  D + W A++     H +   AI A  +++
Sbjct: 370 MYGKCGLISLSMQLFNEIEYRTD-IAWNAVINVFAQHGHGREAIQAFDRMI 419


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/626 (36%), Positives = 359/626 (57%), Gaps = 52/626 (8%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           +R D++T   ++  C +  A++  K VH   +  G   + F+ N L++M+ K S + EA 
Sbjct: 230 LRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEAN 289

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-------------------- 169
            +F+ + +++VVSW  M++ Y      D AL L   M  E                    
Sbjct: 290 KVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKG 349

Query: 170 ---------------GVRPNMFTYSAVLRACDS---LIILRQLHCGIIKVGF-------E 204
                          G+ PN+ T +++L  C S   L+  +Q H  +IK          E
Sbjct: 350 HGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKE 409

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRD--LVVWNSIIGGFAQNSDVDEALNLYK 262
            D+ V + LID+YAK    R A  +F+ +  +D  +V W  +IGG+AQ+ + ++AL L+ 
Sbjct: 410 DDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFA 469

Query: 263 RM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD---LILNNALLDMYC 317
           ++  ++     +  TL+  L AC  L  L LG Q+H + L+ +++   L + N L+DMY 
Sbjct: 470 QIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYS 529

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           K G ++ A +VF  M  ++V+SW+++++G   +G  +EAL LF+ M+      + IT + 
Sbjct: 530 KSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLV 589

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           VL+ACSH+G V+ G  +F  M K +GI PG EHY+CM+DLLGRAG+L EA++LI  M  E
Sbjct: 590 VLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSME 649

Query: 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497
           P AV W ALL A ++H N +L   AA K+  L  ++ G+Y LLSN+YAN+++W +VA +R
Sbjct: 650 PTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIR 709

Query: 498 KTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTN 557
             M+  GI K PGCSWI+  K    F V D SHP+ ++I   L  LI+++  +GY P T+
Sbjct: 710 SLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTS 769

Query: 558 YVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKME 617
           + L D++ E+K D +  HSEKLA+ +G+++   G+ IRI KNLRICGDCH+     + + 
Sbjct: 770 FALHDVDDEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRICGDCHSALTYISMII 829

Query: 618 NQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +  IV+RD  R+HHF+ G+CSC  YW
Sbjct: 830 DHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 161/327 (49%), Gaps = 17/327 (5%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM-PERNVVSW-TTMISAY 150
           AKL H  +   GF   T + +  +  +++     EA  L  ++ P  + V W   +I   
Sbjct: 46  AKLAHQQIFVHGF---TEMFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRS 102

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDV 207
               + D  L     M R G  P+ +T+  VL+AC  +  LR    +H  +   G  S+V
Sbjct: 103 VKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNV 162

Query: 208 FVRSALIDIYAKLGELRNAECVFNEMPTR---DLVVWNSIIGGFAQNSDVDEALNLYKRM 264
           F+ ++++ +Y + G L +A  +F+E+  R   D+V WNSI+  + Q      AL +  RM
Sbjct: 163 FICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRM 222

Query: 265 KR---AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKC 319
                     D  TL ++L AC  +  L+ G QVH   ++     D+ + NAL+ MY KC
Sbjct: 223 GNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKC 282

Query: 320 GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL 379
             + +A  VF  + +KDV+SW+ M++G +Q G    AL LF+ M+   IK + IT   V+
Sbjct: 283 SKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVI 342

Query: 380 FACSHAGFVEDGWNHFKSMKKFYGIDP 406
              +  G   +  + F+ M + YG++P
Sbjct: 343 AGYAQKGHGFEALDVFRQM-QLYGLEP 368



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 189/407 (46%), Gaps = 33/407 (8%)

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFES 205
           MI  +C + ++   +  + F       P      ++LR C +LI  +  H  I   GF +
Sbjct: 1   MIHHHCGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGF-T 59

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEM-PTRDLVVW-NSIIGGFAQNSDVDEALNLYKR 263
           ++F  S  +  Y + G    A  +   + P+   V W N++I    +   +D+ L  Y +
Sbjct: 60  EMF--SYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQ 117

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGS 321
           M+R G+  D  T   VL+AC  +  L  G  VH  V       ++ + N+++ MY +CG+
Sbjct: 118 MQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGA 177

Query: 322 LEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESMKVS---RIKPNYITI 375
           L+DA  +F  ++++   D++SW+++++   Q G S+ AL++   M      +++P+ IT+
Sbjct: 178 LDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITL 237

Query: 376 VGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
           V +L AC+    ++ G   H  S++   G+       + ++ +  +  K+ EA K + E 
Sbjct: 238 VNILPACASVFALQHGKQVHGFSVRN--GLVDDVFVGNALVSMYAKCSKMNEANK-VFEG 294

Query: 435 PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ-DPGTYILLSNIYANSQKWDEV 493
             + D V+W A++       + D A+   K +   D + D  T+  +   YA      E 
Sbjct: 295 IKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEA 354

Query: 494 AEVRKTMRARGITKEP----------GCSWIEV---NKQIHAFNVAD 527
            +V + M+  G+  EP          GC+ +      KQ HA+ + +
Sbjct: 355 LDVFRQMQLYGL--EPNVVTLASLLSGCASVGALLYGKQTHAYVIKN 399


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/605 (37%), Positives = 356/605 (58%), Gaps = 13/605 (2%)

Query: 50  CYQRD--LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY +D     A+K    M       + VT+   +  CL        K++H  V+  G + 
Sbjct: 336 CYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTNGKILHGFVVVLGLQD 395

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD-AKMNDKALELLIFM 166
           E  + N L+  + K   + EA+ +F +MP+ + V+W  +I  + + A++N+        +
Sbjct: 396 ELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAELNEAVAAFK--L 453

Query: 167 LREGVRPNM--FTYSAVLRAC----DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKL 220
           +REG    +   T   +L +C    D +     +H   +  GF+ D  V+S+LI +YAK 
Sbjct: 454 MREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKC 513

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           G+L ++  +F+++  +   VWN+II   A+    +EAL L  RM+ AG   DQ   ++ L
Sbjct: 514 GDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALKLVVRMRSAGIEFDQFNFSTAL 573

Query: 281 RACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
                LA+LE G Q+H   +K  ++ D  + NA +DMY KCG L+DA+ +  +   +  +
Sbjct: 574 SVAADLAMLEEGQQLHGSTIKLGFELDHFIINAAMDMYGKCGELDDALRILPQPTDRSRL 633

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
           SW+T+IS  A++G   +A + F  M    +KPN+++ V +L ACSH G V++G  ++ SM
Sbjct: 634 SWNTLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVCLLSACSHGGLVDEGLAYYASM 693

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
              YGI PG EH  CMIDLLGR+G+L EA   I EMP  P+ + WR+LL +C+++RN DL
Sbjct: 694 TSVYGIQPGIEHCVCMIDLLGRSGRLVEAEAFITEMPIPPNDLVWRSLLASCRIYRNLDL 753

Query: 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNK 518
              AAK +L LDP D   Y+L SN++A   +W++V +VR  M A  I K+P  SW++   
Sbjct: 754 GRKAAKHLLELDPSDDSAYVLYSNVFATIGRWEDVEDVRGQMGAHKIQKKPAHSWVKWKG 813

Query: 519 QIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEK 578
            I  F + D +HPQ+++IN  L  L++ +   GY PDT+Y LQD + EQKE ++  HSE+
Sbjct: 814 NISIFGMGDQTHPQMEQINGKLLGLMKIVGEAGYVPDTSYSLQDTDEEQKEHNMWSHSER 873

Query: 579 LAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCS 638
           +A+ FGL+++ +G T+RI KNLR+CGDCH+F K  + +  + IV+RDP R+HHF +GNCS
Sbjct: 874 IALAFGLINIPEGSTVRIFKNLRVCGDCHSFFKFVSGVLGRKIVLRDPYRFHHFTNGNCS 933

Query: 639 CGDYW 643
           C DYW
Sbjct: 934 CSDYW 938



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/354 (30%), Positives = 193/354 (54%), Gaps = 13/354 (3%)

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ KF  +  AQ++FD+M ERN  SW  M+S Y       +A+     +   G++P+ F 
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 178 YSAVLRACDSLIILR----QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
            ++++ AC+   I+     Q H   IK G   DVFV ++ +  YA  G + NA+ +FNEM
Sbjct: 61  IASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEM 120

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           P R++V W S++  ++ N    E +N YKRM+  G   +++ +  V+ +C  L  + LG 
Sbjct: 121 PDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGH 180

Query: 294 QVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+  H LK+  +  ++  N+L+ M+  CG + +A S+F+ M ++D ISW+++IS  AQN 
Sbjct: 181 QLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNT 240

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREH 410
             +E+ + F  M++   + NY T+  +L  C    +++ G   H  ++K  YG++     
Sbjct: 241 LHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVK--YGLESNICL 298

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAK 464
            + ++ +   AG+ ++A  +   MP E D ++W ++L AC V       +CA K
Sbjct: 299 CNTLLSVYSDAGRSKDAELIFRRMP-ERDLISWNSML-ACYVQDGR--CLCALK 348



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/424 (29%), Positives = 208/424 (49%), Gaps = 15/424 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAV-EEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           G++      A L+  C     + +E    H   +  G   + F+    ++ +  + ++  
Sbjct: 53  GIKPSGFMIASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSN 112

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           AQ +F++MP+RNVVSWT+++ +Y D     + +     M  EG+  N    + V+ +C  
Sbjct: 113 AQKMFNEMPDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGF 172

Query: 188 L---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L   I+  QL    +K G E+ V   ++LI ++   G++  A  +FNEM  RD + WNSI
Sbjct: 173 LMDIILGHQLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSI 232

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY-- 302
           I   AQN+  +E+   +  M+      + +TL+ +L  C  +  L+ G  VH   +KY  
Sbjct: 233 ISANAQNTLHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGL 292

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           + ++ L N LL +Y   G  +DA  +F RM ++D+ISW++M++   Q+G    ALK+F  
Sbjct: 293 ESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAE 352

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF---YGIDPGREHYSCMIDLLG 419
           M   + + NY+T    L AC    F  +G    K +  F    G+       + +I   G
Sbjct: 353 MLWMKKEINYVTFTSALAACLDPEFFTNG----KILHGFVVVLGLQDELIIGNTLITFYG 408

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           +  K+ EA K+   MP + D VTW AL+G    +   + A+ AA K++         YI 
Sbjct: 409 KCHKMAEAKKVFQRMP-KLDKVTWNALIGGFANNAELNEAV-AAFKLMREGSTSGVDYIT 466

Query: 480 LSNI 483
           + NI
Sbjct: 467 IVNI 470



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 210/407 (51%), Gaps = 15/407 (3%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            + +  H M+      +  T + L+  C +   ++  K VH   +  G E    L N LL
Sbjct: 244 ESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLL 303

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +++      ++A+++F +MPER+++SW +M++ Y        AL++   ML      N  
Sbjct: 304 SVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYV 363

Query: 177 TYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T+++ L AC   +     + LH  ++ +G + ++ + + LI  Y K  ++  A+ VF  M
Sbjct: 364 TFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRM 423

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA-DQSTLTSVLRAC-TGLALLEL 291
           P  D V WN++IGGFA N++++EA+  +K M+    +  D  T+ ++L +C T   L++ 
Sbjct: 424 PKLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKY 483

Query: 292 GTQVHVH--VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G  +H H  V  +D D  + ++L+ MY KCG L  +  +F +++ K    W+ +I+  A+
Sbjct: 484 GIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANAR 543

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGR 408
            G+ +EALKL   M+ + I+ +       L   +    +E+G   H  ++K  + +D   
Sbjct: 544 YGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLGFELD--- 600

Query: 409 EHY--SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            H+  +  +D+ G+ G+L +A++++ + P +   ++W  L+     H
Sbjct: 601 -HFIINAAMDMYGKCGELDDALRILPQ-PTDRSRLSWNTLISISARH 645


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/557 (40%), Positives = 347/557 (62%), Gaps = 9/557 (1%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  ++  G   + F+V  LL    K   ++ A  +F      NV  +T +I  +  +  
Sbjct: 51  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 110

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSA 212
              A++L   ML + + P+ +  +++L+AC S + LR+   +H   +K+G  S+  VR  
Sbjct: 111 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLR 170

Query: 213 LIDIYAKLGELRNAECVFNEMP----TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           ++++Y K GEL +A  VF EMP     +D V W ++I GF +N +++ AL  ++ M+   
Sbjct: 171 IMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGEN 230

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAM 326
              ++ T+  VL AC+ L  LE+G  VH ++ K++   +L + NAL++MY +CGS+++A 
Sbjct: 231 VRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQ 290

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
           +VF  M  +DVI+++TMISGL+ NG S++A++LF  M   R++P  +T VGVL ACSH G
Sbjct: 291 TVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGG 350

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            V+ G+  F SM + YG++P  EHY CM+DLLGR G+L+EA  LI  M   PD +    L
Sbjct: 351 LVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTL 410

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           L ACK+H+N +L    AK + +    D GTY+LLS++YA+S KW E A+VR  M+  G+ 
Sbjct: 411 LSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQ 470

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           KEPGCS IEVN +IH F + D  HP+ ++I + L+ L + L   GY P+   VLQD+E  
Sbjct: 471 KEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDG 530

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
           +KE ++  HSE+LAI +GL+S      IR+ KNLR+C DCH+  KL AK+  + +V+RD 
Sbjct: 531 EKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDR 590

Query: 627 IRYHHFQDGNCSCGDYW 643
            R+H+F++G CSCGDYW
Sbjct: 591 NRFHYFENGACSCGDYW 607



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 174/369 (47%), Gaps = 40/369 (10%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D+   A ++K C ++ A+ E + VH+  L  G      +   ++ ++ K   L +A+ +F
Sbjct: 129 DNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVF 188

Query: 133 DQMPE----RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           ++MPE    ++ V WT MI  +   +  ++ALE    M  E VRPN FT   VL AC  L
Sbjct: 189 EEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQL 248

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             L   R +H  + K   E ++FV +ALI++Y++ G +  A+ VF+EM  RD++ +N++I
Sbjct: 249 GALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMI 308

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD 305
            G + N    +A+ L++ M          T   VL AC+   L++ G ++  H +  D+ 
Sbjct: 309 SGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKI-FHSMTRDYG 367

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
                                      ++  +  +  M+  L + G  +EA  L  +MK+
Sbjct: 368 ---------------------------VEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKM 400

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
           +   P++I +  +L AC     +E G    K ++     D G   Y  +  +   +GK +
Sbjct: 401 T---PDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGT--YVLLSHVYASSGKWK 455

Query: 426 EAVKLIHEM 434
           EA ++  +M
Sbjct: 456 EAAQVRAKM 464



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 121/262 (46%), Gaps = 45/262 (17%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++D F R     ++ RA++A   MQ   VR +  T   ++  C    A+E  + VH++
Sbjct: 204 TAMIDGFVR---NEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSY 260

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           +     E   F+ N L+NM+ +   ++EAQ +FD+M +R+V+++ TMIS       + +A
Sbjct: 261 MRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQA 320

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
           +EL   M+   +RP   T+  VL AC         H G++  GF+               
Sbjct: 321 IELFRVMIGRRLRPTNVTFVGVLNACS--------HGGLVDFGFK--------------- 357

Query: 220 LGELRNAECVFNEMPTRDLVV------WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
                    +F+ M TRD  V      +  ++    +   ++EA +L + MK      D 
Sbjct: 358 ---------IFHSM-TRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMK---MTPDH 404

Query: 274 STLTSVLRACTGLALLELGTQV 295
             L ++L AC     LELG QV
Sbjct: 405 IMLGTLLSACKMHKNLELGEQV 426


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/598 (38%), Positives = 348/598 (58%), Gaps = 7/598 (1%)

Query: 53  RDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
           RD  R       M   G+    V  +  +  C     +   + +   +L  G E E+ + 
Sbjct: 40  RDFDRCWLFFRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQ 99

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
             L++M+ K     +A  +F +M  R+VV+W+ M++AY       +AL L   M  +GV 
Sbjct: 100 TALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVA 159

Query: 173 PNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           PN  T  + L AC SL  LR    +H  +   G +S V V +AL+++Y K G +  A   
Sbjct: 160 PNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEA 219

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F ++  +++V W++I   +A+N    +A+ +  RM   G   + +T  SVL AC  +A L
Sbjct: 220 FGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAAL 279

Query: 290 ELGTQVH--VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
           + G ++H    VL    + D+ +  AL++MY KCG+L  A  +F ++   D++ W+++I+
Sbjct: 280 KQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIA 339

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
             AQ+G +++AL+LFE M++  ++P  IT   VLFACSHAG ++ G  HF S    +GI 
Sbjct: 340 TNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIF 399

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
           P  EH+ CM+DLLGRAG + ++  L+  MP+EP  V W A LGAC+ +RN D AI AA+ 
Sbjct: 400 PEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAEN 459

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
           +  LDP+    Y+LLSN+YA + +W +VA +R+ M+     KE G SWIEV  ++H F  
Sbjct: 460 LFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFIS 519

Query: 526 ADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGL 585
            D  HP+I +I+  L+ L + +   GY PDT  VL D++ E KE  + YHSEKLA+ F L
Sbjct: 520 GDLDHPRIGEIHAELQRLTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFAL 579

Query: 586 MSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           ++  +G  IR+ KNLR+C DCHT +K  +K+ N+ IV+RD  R+H FQ+G CSCGDYW
Sbjct: 580 LTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 193/380 (50%), Gaps = 8/380 (2%)

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           +L+ + +   +   +  FD+MP  ++VSW  +I+AY   +  D+       ML +G+ P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 175 MFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
               S  L AC     + I R +   I+  G E +  V++AL+ +Y KLG   +A  VF 
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
            M  RD+V W++++  +A+N    EAL L+++M   G A ++ TL S L AC  L  L  
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 180

Query: 292 GTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G  +H  V        +++  AL+++Y KCG +E A+  F ++++K+V++WS + +  A+
Sbjct: 181 GALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYAR 240

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGR 408
           N  +++A+++   M +  + PN  T V VL AC+    ++ G   H ++     G++   
Sbjct: 241 NDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDV 300

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
              + ++++  + G L  A  +  ++ +  D V W +L+     H  T+ A+   ++ + 
Sbjct: 301 YVLTALVNMYSKCGNLALAGDMFDKIAH-LDLVLWNSLIATNAQHGQTEKALELFER-MR 358

Query: 469 LDPQDPGTYILLSNIYANSQ 488
           L+   P      S ++A S 
Sbjct: 359 LEGLQPTIITFTSVLFACSH 378


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/593 (37%), Positives = 354/593 (59%), Gaps = 7/593 (1%)

Query: 58  AMKAMHAMQCHG-VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           A+++   M C G VR D+ T A ++        V   + VH+     G      ++  L+
Sbjct: 195 AVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLI 254

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +++ K   +E A+ LFD M + ++V++  +IS Y    M   ++ L   ++  G+ PN  
Sbjct: 255 SLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSS 314

Query: 177 TYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T  A++         ++ + LH  ++K GF ++  V +A+  ++ +L ++ +A   F+ M
Sbjct: 315 TLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTM 374

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           P + +  WN++I G+AQN   + A+ L+++M +     +  T++S L AC  L  L LG 
Sbjct: 375 PEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGK 434

Query: 294 QVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
            +H  + + D   ++ +  AL+DMY KCGS+ +A  +F+ M  K+V+SW+ MI+G   +G
Sbjct: 435 WLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHG 494

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
              EALKL++ M  + + P   T + VL+ACSH G VE+GW  F+SM   Y I+PG EH 
Sbjct: 495 QGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHC 554

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
           +CM+DLLGRAG+L+EA +LI E P        W ALLGAC VH+++DLA  A++K+  LD
Sbjct: 555 TCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELD 614

Query: 471 PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSH 530
           P++ G Y+LLSN++ + +++ E A VR+  ++R + K PG + IE+  + H F   D +H
Sbjct: 615 PENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAH 674

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           PQ + I  +L+ L  K++  GY P+T   L D+E E+KE  ++ HSEKLAI FGL+S   
Sbjct: 675 PQSEAIYSYLEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEP 734

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           G  IRI KNLR+C DCH   K  +K+  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 735 GTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 198/388 (51%), Gaps = 15/388 (3%)

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           +TF+ + L  ++   S ++ A+ +FD +P  + V W T+++         +A+E    M+
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLS----GSEAVESFARMV 203

Query: 168 REG-VRPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
            +G VRP+  T ++VL A      + + R +H    K G      V + LI +Y+K G++
Sbjct: 204 CDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDV 263

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
            +A C+F+ M   DLV +N++I G++ N  V  ++NL+  +   G   + STL +++   
Sbjct: 264 ESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVH 323

Query: 284 TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
           +      L   +H  VLK  +  +  ++ A+  ++C+   +E A   F  M +K + SW+
Sbjct: 324 SPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWN 383

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKK 400
            MISG AQNG ++ A+ LFE M    ++PN ITI   L AC+  G +  G W H    ++
Sbjct: 384 AMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEE 443

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
              ++P     + +ID+  + G + EA ++ + M  + + V+W A++    +H     A+
Sbjct: 444 --DLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNK-NVVSWNAMIAGYGLHGQGAEAL 500

Query: 461 CAAKKILNLDPQDPGTYILLSNIYANSQ 488
              K +L+     P +   LS +YA S 
Sbjct: 501 KLYKDMLDAH-LLPTSATFLSVLYACSH 527



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 177/403 (43%), Gaps = 57/403 (14%)

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           LH   +  G+ +D FV SAL  +Y  L  + +A  VF+ +P+ D V+WN+++ G + +  
Sbjct: 136 LHALAVAAGYAADTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGS-- 193

Query: 254 VDEALNLYKRMKRAG-FAADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHDLILN 309
             EA+  + RM   G    D +TL SVL A   +A + +G  VH    K    +H+ +L 
Sbjct: 194 --EAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLT 251

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
             L+ +Y KCG +E A  +F  M + D+++++ +ISG + NG    ++ LF  +    + 
Sbjct: 252 G-LISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLW 310

Query: 370 PNYITIVG-----------VLFACSHAGFVEDGW-----------------NHFKSMKKF 401
           PN  T+V            +L  C H   ++ G+                 N  +S +K 
Sbjct: 311 PNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKA 370

Query: 402 YGIDPGR--EHYSCMIDLLGRAGKLQEAVKLIHEM---PYEPDAVTWRALLGACKVHRNT 456
           +   P +  E ++ MI    + G  + AV L  +M      P+ +T  + L AC      
Sbjct: 371 FDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGAL 430

Query: 457 DLAICAAKKILNLDPQDPGTYIL--LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWI 514
            L      +I+  +  +P  Y++  L ++YA      E   +  TM  + +      SW 
Sbjct: 431 SLGKW-LHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVV-----SW- 483

Query: 515 EVNKQIHAFNV----ADSSHPQIDKINKHLKHLIQKLVGVGYA 553
             N  I  + +    A++     D ++ HL       + V YA
Sbjct: 484 --NAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYA 524


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/632 (36%), Positives = 352/632 (55%), Gaps = 43/632 (6%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D   A++    M+C  V+ +S TY  +I        + E + +H  +++ GF+ +  +  
Sbjct: 188 DWSGALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVAT 246

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L+NM+ K     EA+ +FD+M +R++VSW  MI  Y       +ALEL   +  EG + 
Sbjct: 247 ALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKR 306

Query: 174 NMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
              T+ ++L AC S+  L Q   +H  I++ G +S+V V +AL+++YAK G L  A  VF
Sbjct: 307 TKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVF 366

Query: 231 NEMPTRDLVVWNSIIGGFAQNS---DVDEALNLYKRMKR--------------------- 266
           N M  RD V W+++IG +A N    D  +A  ++ R+                       
Sbjct: 367 NAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVA 426

Query: 267 -----------AGFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALL 313
                      AG   D  T  +VL AC  L  L     +H  +   + + ++++ N L+
Sbjct: 427 AMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLI 486

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           +MY +CGSLE+A  +F+   +K V+SW+ M++  +Q G   EAL LF+ M +  +KP+ +
Sbjct: 487 NMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDV 546

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
           T   +LF C+H G +E GW +F  M + + + P  +H++ M+DLLGR+G+L +A +L+  
Sbjct: 547 TYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLES 606

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
           MP+EPD V W   L AC++H   +L   AA+++  LDP     YI +SNIYA    W++V
Sbjct: 607 MPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKV 666

Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYA 553
           A VRK M  RG+ K PG S+IEV+ ++H F+     HP+ D+I + L  L   +   GY 
Sbjct: 667 ASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYV 726

Query: 554 PDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM-SLTQGKTIRIRKNLRICGDCHTFAKL 612
           PDT  VL D+   +KE  + YHSEK+AI FGL+ S   G+ IR+ KNLR+C DCHT  K 
Sbjct: 727 PDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKF 786

Query: 613 TAKMENQTIVIRDPIRYHHF-QDGNCSCGDYW 643
            A++  + I++RD  R+H F  DG CSCGDYW
Sbjct: 787 IARIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/382 (31%), Positives = 208/382 (54%), Gaps = 9/382 (2%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D+VT+  ++  C +   V E + +H  +    FE +T + N L++M+ K   L +A+ +F
Sbjct: 6   DNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVF 65

Query: 133 DQMP--ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           + M   +RNVVSW  MI+AY     + +AL L   M  +G+  +  T+ +VL AC SL  
Sbjct: 66  ESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ 125

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
            R++H  +   G +S   + +AL+ +YA+ G + +A+ +F  + TRD   WN++I   +Q
Sbjct: 126 GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQ 185

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
           + D   AL ++K MK      + +T  +V+   +   +L  G ++H  ++   +D DL++
Sbjct: 186 SGDWSGALRIFKEMK-CDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVV 244

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
             AL++MY KCGS  +A  VF +M ++D++SW+ MI     NG   EAL+L++ + +   
Sbjct: 245 ATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGF 304

Query: 369 KPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           K    T V +L ACS    +  G   H   +++  G+D      + ++++  + G L+EA
Sbjct: 305 KRTKATFVSILGACSSVKALAQGRLVHSHILER--GLDSEVAVATALVNMYAKCGSLEEA 362

Query: 428 VKLIHEMPYEPDAVTWRALLGA 449
            K+ + M    DAV W  L+GA
Sbjct: 363 RKVFNAMK-NRDAVAWSTLIGA 383


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/526 (42%), Positives = 329/526 (62%), Gaps = 10/526 (1%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM--LREGVRPNMFTYSAVL 182
           +E+A  LF++MP RNV+SWT++I        N ++ E L+    +    +    T +  L
Sbjct: 190 VEDAIELFEKMPNRNVISWTSVIGGL---DHNGRSFEALVVFHKMLASFKATSSTLACAL 246

Query: 183 RACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
            AC ++    I  Q+H  I+K G+  + ++ ++LI  YA    + NA  +FN+  +R++V
Sbjct: 247 TACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVV 306

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV-- 297
           VW +++ G+  N    +AL ++K M R     +QS+LTS L +C GL  ++ G +VH   
Sbjct: 307 VWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVA 366

Query: 298 HVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           H L  + D+ ++N+L+ MY KCG + D ++VF+RM +K+V+SW+++I G AQ+G+ + AL
Sbjct: 367 HKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWAL 426

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
            LF  M  +R+ P+ IT+ G+L AC H+G +  G   FK   K +GI+   EHYS M+DL
Sbjct: 427 TLFAQMIRTRVDPDEITLAGLLSACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMVDL 486

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           LGR G+L+EA  LIH MP + + + W ALL +   H N  +A  AAK +L+L P     Y
Sbjct: 487 LGRYGQLEEAEALIHIMPGKANYMVWLALLSSSINHSNVHVAERAAKCVLDLQPNCSAAY 546

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
            LLSN+YA++ KW EV+++RK M+  GI K+PG SWI +    H F   D SHP   KI 
Sbjct: 547 TLLSNLYASTGKWTEVSKIRKKMKDEGILKQPGSSWITIKGIKHNFISGDQSHPLSRKIY 606

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
           + L+ L  KL  +GY PD  +   D+E EQKE+ + YHSE+LAI FGL+S  +G TI + 
Sbjct: 607 QKLEWLGGKLKELGYVPDPKFSFHDVETEQKEEMLSYHSERLAIGFGLISTVEGSTIIVM 666

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLRICGDCH   KLT+K+  + IV+RDP R+HHF +G CSCGDYW
Sbjct: 667 KNLRICGDCHNAVKLTSKVVGREIVVRDPSRFHHFHNGTCSCGDYW 712



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/396 (22%), Positives = 189/396 (47%), Gaps = 16/396 (4%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
           ++EA+ + N + S    P   L  +++  +     LE+A  LF +MP ++++SW +M+  
Sbjct: 66  IDEARSLFNKMSS----PGVNLYTMMIGGYADEGRLEDALKLFYEMPVKDLISWNSMLKG 121

Query: 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFV 209
            C  K  D  L +   M  +    N+ +++ ++        +    C + +V    DV  
Sbjct: 122 -C-LKCGD--LTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVAEC-LFRVMPTKDVTA 176

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
            ++++  +   G + +A  +F +MP R+++ W S+IGG   N    EAL ++ +M  A F
Sbjct: 177 WNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKM-LASF 235

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMS 327
            A  STL   L AC  +    +G Q+H  ++K  Y  +  ++ +L+  Y  C  +++A S
Sbjct: 236 KATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASS 295

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           +F+  + ++V+ W+ +++G   N    +AL++F+ M    + PN  ++   L +C     
Sbjct: 296 IFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSALNSCCGLEA 355

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           V+ G     ++    G++      + ++ +  + G + + + +   M    + V+W +++
Sbjct: 356 VDRG-REVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMS-RKNVVSWNSII 413

Query: 448 GACKVHRNTDLAICAAKKIL--NLDPQDPGTYILLS 481
             C  H     A+    +++   +DP +     LLS
Sbjct: 414 VGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGLLS 449



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 131/257 (50%), Gaps = 7/257 (2%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  ++  G+    ++   L++ +    L++ A  +F+    RNVV WT +++ Y     
Sbjct: 261 IHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCR 320

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSA 212
           +  AL++   M+R  V PN  + ++ L +C  L  +   R++H    K+G ESD+FV ++
Sbjct: 321 HTDALQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSNS 380

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           L+ +Y K G + +   VF  M  +++V WNSII G AQ+     AL L+ +M R     D
Sbjct: 381 LVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPD 440

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN---NALLDMYCKCGSLEDAMSVF 329
           + TL  +L AC    +L  G     H  K     + N   ++++D+  + G LE+A ++ 
Sbjct: 441 EITLAGLLSACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMVDLLGRYGQLEEAEALI 500

Query: 330 SRMIQK-DVISWSTMIS 345
             M  K + + W  ++S
Sbjct: 501 HIMPGKANYMVWLALLS 517



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 104/233 (44%), Gaps = 11/233 (4%)

Query: 33  NTITRNS---SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHA 89
           + ++RN    ++LL  +   C   D  +  K M  M    V  +  +    +  C    A
Sbjct: 299 DNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMS---VLPNQSSLTSALNSCCGLEA 355

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
           V+  + VH      G E + F+ N L+ M+ K   + +   +F +M  +NVVSW ++I  
Sbjct: 356 VDRGREVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVG 415

Query: 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFV 209
                    AL L   M+R  V P+  T + +L AC    +L +  C     G    + +
Sbjct: 416 CAQHGFGRWALTLFAQMIRTRVDPDEITLAGLLSACGHSGMLTKGRCFFKHFGKNFGIEM 475

Query: 210 R----SALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
                S+++D+  + G+L  AE + + MP + + +VW +++     +S+V  A
Sbjct: 476 TNEHYSSMVDLLGRYGQLEEAEALIHIMPGKANYMVWLALLSSSINHSNVHVA 528



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 75/167 (44%), Gaps = 31/167 (18%)

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
           +N LL  + + G +++A S+F++M    V  ++ MI G A  G  ++ALKLF  M V   
Sbjct: 53  SNYLLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVK-- 110

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKK------------------------FYGI 404
             + I+   +L  C   G +    N F  M +                         + +
Sbjct: 111 --DLISWNSMLKGCLKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVAECLFRV 168

Query: 405 DPGRE--HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            P ++   ++ M+      G++++A++L  +MP   + ++W +++G 
Sbjct: 169 MPTKDVTAWNSMVHGFFSNGRVEDAIELFEKMP-NRNVISWTSVIGG 214


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/580 (39%), Positives = 344/580 (59%), Gaps = 6/580 (1%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G R D+VT   ++  C    A+   + VH   + GGF+ +  +   +L+++ K   ++ A
Sbjct: 322 GERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSA 381

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +FD M +RN VSW  MI  Y +     +AL L   M+ EGV     +  A L AC  L
Sbjct: 382 RKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGEL 441

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             L   R++H  ++++G ES+V V +ALI +Y K      A  VF+E+  +  V WN++I
Sbjct: 442 GFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMI 501

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--D 303
            G  QN   ++A+ L+ RM+      D  TL S++ A   ++       +H + ++   D
Sbjct: 502 LGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLD 561

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D+ +  AL+DMY KCG +  A S+F+    + VI+W+ MI G   +G  + A++LFE M
Sbjct: 562 QDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEM 621

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
           K S   PN  T + VL ACSHAG V++G  +F SMK+ YG++PG EHY  M+DLLGRAGK
Sbjct: 622 KSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGK 681

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L EA   I +MP EP    + A+LGACK+H+N +LA  +A++I  L+P++   ++LL+NI
Sbjct: 682 LHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANI 741

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           YAN+  W +VA VR  M  +G+ K PG S +++  +IH F    ++H Q   I   L  L
Sbjct: 742 YANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKL 801

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
           I+++  VGY PDT+ +  D+E + K   +  HSEKLAI +GL+    G TI+I+KNLR+C
Sbjct: 802 IEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVC 860

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            DCH   KL + +  + I++RD  R+HHF+DG CSCGDYW
Sbjct: 861 KDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/417 (30%), Positives = 220/417 (52%), Gaps = 11/417 (2%)

Query: 52  QRDLPRAMKAMHAMQ-CHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           + DL  A+ A  AM    G      T+  L+K C AR  +   + VH  + + G  PE  
Sbjct: 202 RSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEAL 261

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE- 169
               L NM+ K     +A+ +FD+MP R+ V+W  +++ Y    + + A+ +++ M  E 
Sbjct: 262 AATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEED 321

Query: 170 GVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           G RP+  T  +VL AC    +L   R++H   ++ GF+  V V +A++D+Y K G + +A
Sbjct: 322 GERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSA 381

Query: 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
             VF+ M  R+ V WN++I G+A+N D  EAL L+KRM   G      ++ + L AC  L
Sbjct: 382 RKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGEL 441

Query: 287 ALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
             L+ G +VH  +++   +  +N  NAL+ MYCKC   + A  VF  +  K  +SW+ MI
Sbjct: 442 GFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMI 501

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH-AGFVEDGWNHFKSMKKFYG 403
            G  QNG S++A++LF  M++  +KP+  T+V ++ A +  +  ++  W H  S++    
Sbjct: 502 LGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIR--LH 559

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           +D      + +ID+  + G++  A  L +    +   +TW A++     H +  +A+
Sbjct: 560 LDQDVYVLTALIDMYAKCGRVSIARSLFNS-ARDRHVITWNAMIHGYGSHGSGKVAV 615



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 190/423 (44%), Gaps = 25/423 (5%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RNS S       +    D   A+     M   GV    V+    +  C     ++E + V
Sbjct: 391 RNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRV 450

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H  ++  G E    ++N L+ M+ K    + A  +FD++  +  VSW  MI        +
Sbjct: 451 HELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSS 510

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSAL 213
           + A+ L   M  E V+P+ FT  +++ A   +   +  R +H   I++  + DV+V +AL
Sbjct: 511 EDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTAL 570

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           ID+YAK G +  A  +FN    R ++ WN++I G+  +     A+ L++ MK +G   ++
Sbjct: 571 IDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNE 630

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVF 329
           +T  SVL AC+   L++ G Q +   +K D+ L         ++D+  + G L +A S  
Sbjct: 631 TTFLSVLSACSHAGLVDEG-QEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFI 689

Query: 330 SRMIQKDVIS-WSTMISG--LAQNG--YSQEALKLFE--------SMKVSRIKPN---YI 373
            +M  +  IS +  M+    L +N     + A ++FE         + ++ I  N   + 
Sbjct: 690 QKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWK 749

Query: 374 TIVGVLFACSHAGFVE-DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
            +  V  A    G  +  GW+  +   + +    G  ++    D+  R  KL E +K + 
Sbjct: 750 DVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVG 809

Query: 433 EMP 435
            +P
Sbjct: 810 YVP 812


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/593 (37%), Positives = 347/593 (58%), Gaps = 27/593 (4%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           R ++    M   G+  D  T   ++  C     +   K VH+  +   FE      N LL
Sbjct: 234 RGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLL 293

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   L+ A  +F++M ERNVVSWT+MI+ Y     +D A+ LL  M +EGV+ ++ 
Sbjct: 294 DMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVV 353

Query: 177 TYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
             +++L AC    SL   + +H  I     ES++FV +AL+D+Y K G +  A  VF+ M
Sbjct: 354 ATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTM 413

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +D++ WN++IG                         D  T+  +L AC  L+ LE G 
Sbjct: 414 VVKDIISWNTMIGELK---------------------PDSRTMACILPACASLSALERGK 452

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           ++H ++L+  Y  D  + NAL+D+Y KCG L  A  +F  +  KD++SW+ MISG   +G
Sbjct: 453 EIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHG 512

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           Y  EA+  F  M+ + I+P+ ++ + +L+ACSH+G +E GW  F  MK  + I+P  EHY
Sbjct: 513 YGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHY 572

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +CM+DLL R G L +A + I  +P  PDA  W ALL  C+++ + +LA   A+++  L+P
Sbjct: 573 ACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEP 632

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF-NVADSSH 530
           ++ G Y+LL+NIYA ++KW+EV  +R+ +  +G+ K PGCSWIE+  +++ F +  +SSH
Sbjct: 633 ENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSH 692

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           P   KI   LK + +K+   GY P T Y L + +  QKE ++  HSEKLA+ FGL++L  
Sbjct: 693 PHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLALPP 752

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KT+R+ KNLR+CGDCH  AK  +K   + IV+RD  R+HHF++G CSC  +W
Sbjct: 753 RKTVRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKNGYCSCRGFW 805



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 142/539 (26%), Positives = 242/539 (44%), Gaps = 90/539 (16%)

Query: 13  KPSSQARQFSLTITP--PVASCNTITRNSSSLLDDFT----RFCYQRDLPRAMKAMHAMQ 66
           KP+S+A  FS   +   P+    T TR     + D+      FC   +L  AM+ +    
Sbjct: 34  KPTSKATFFSPIFSSCLPIRISATPTRTIDRQVTDYNAKILHFCQLGNLENAMELV--CM 91

Query: 67  CHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLS------------------------ 102
           C     ++ TY+ +++ C    ++ + K VH+ + S                        
Sbjct: 92  CQKSELETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLK 151

Query: 103 ---------------------------GGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
                                      G F+    L  I++   ++    E A  LFD++
Sbjct: 152 EGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKL 211

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILR 192
            +R+V+SW +MIS Y    + ++ LE+   M+  G+  ++ T  +VL  C    +L + +
Sbjct: 212 CDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGK 271

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            +H   IK  FE  +   + L+D+Y+K G+L  A  VF +M  R++V W S+I G+ ++ 
Sbjct: 272 AVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDG 331

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNN 310
             D A+ L ++M++ G   D    TS+L AC     L+ G  VH ++     + +L + N
Sbjct: 332 RSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCN 391

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           AL+DMY KCGS++ A SVFS M+ KD+ISW+TMI  L                     KP
Sbjct: 392 ALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGEL---------------------KP 430

Query: 371 NYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           +  T+  +L AC+    +E G   H   ++  Y  D  R   + ++DL  + G L  A +
Sbjct: 431 DSRTMACILPACASLSALERGKEIHGYILRNGYSSD--RHVANALVDLYVKCGVLGLA-R 487

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
           L+ +M    D V+W  ++    +H   + AI    ++ +   + P     +S +YA S 
Sbjct: 488 LLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIE-PDEVSFISILYACSH 545


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/547 (41%), Positives = 343/547 (62%), Gaps = 7/547 (1%)

Query: 104 GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL 163
           GF+ E F+ + L +M+ K  LL EA  +FDQMP+++ V+WT MI  Y      + A+   
Sbjct: 71  GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSF 130

Query: 164 IFMLREG-VRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
             M REG V  +   + +VL A   L    + + +HC + K GFE +V VR+ALID+YAK
Sbjct: 131 RDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAK 190

Query: 220 LGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278
             ++ +A  V    P   ++V   S+I G+ +   V+EAL +Y  ++R G   ++ T +S
Sbjct: 191 SMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSS 250

Query: 279 VLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD 336
           +++ C   ALLE G Q+H  V+K D   D  + + L+DMY KCG +  +M +F+ +  + 
Sbjct: 251 MIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRT 310

Query: 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
            I+W+ +I+  AQ+G+ +EA++ F+ M  S I+PN+I  V +L ACSHAG V++G  +F 
Sbjct: 311 DIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFY 370

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
           SMK+ +GI+P  EHYSC+ID  GRAG+L EA K I EMP +P+A  W +LLGAC++  + 
Sbjct: 371 SMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSK 430

Query: 457 DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEV 516
           +L   AA+ ++ L+P + G ++ LS IYA+  +W++V  VRK MR   I K PG SW++ 
Sbjct: 431 ELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDS 490

Query: 517 NKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHS 576
           NK+ H F   D SHPQ   I + L+ L  ++   GY PDT+++  +LE   KE  ++YHS
Sbjct: 491 NKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHS 550

Query: 577 EKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGN 636
           E++A+ F L+S+   K I ++KNLRIC DCHT  K   K+E + I++RD  R+HHF +G 
Sbjct: 551 ERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGR 610

Query: 637 CSCGDYW 643
           CSCGDYW
Sbjct: 611 CSCGDYW 617



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 184/347 (53%), Gaps = 23/347 (6%)

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF---TYSAVLRACDSLIIL 191
           MP RN VSWTT++S      M+  AL     M R GV P  F   + +    A  + +  
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG 60

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
            QLHC  +++GF++++FV S L D+Y+K G L  A  VF++MP +D V W ++I G+A+N
Sbjct: 61  AQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKN 120

Query: 252 SDVDEALNLYKRMKRAGF-AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
             ++ A+  ++ MKR G   ADQ    SVL A  GL    L   +H  V K  ++ ++ +
Sbjct: 121 GSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAV 180

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKD-----VISWSTMISGLAQNGYSQEALKLFESM 363
            NAL+DMY K   +E A    SR+++ D     V+S ++MI G  +    +EAL ++  +
Sbjct: 181 RNALIDMYAKSMDVESA----SRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVEL 236

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHY--SCMIDLLGR 420
           +   ++PN  T   ++  C+    +E G   H + +K     D  R+ +  S ++D+ G+
Sbjct: 237 RRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIK----TDLIRDSFVGSTLVDMYGK 292

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            G +  +++L +E+ Y  D + W A++     H +   AI A  +++
Sbjct: 293 CGLISLSMQLFNEIEYRTD-IAWNAVINVFAQHGHGREAIQAFDRMI 338


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/593 (38%), Positives = 346/593 (58%), Gaps = 27/593 (4%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           R +     M   G+  D  T   ++  C     +   K VH+  +   FE      N LL
Sbjct: 96  RGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLL 155

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   L+ A  +F++M ERNVVSWT+MI+ Y     +D A+ LL  M +EGV+ ++ 
Sbjct: 156 DMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVV 215

Query: 177 TYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
             +++L AC    SL   + +H  I      S++FV +AL+D+YAK G +  A  VF+ M
Sbjct: 216 AITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTM 275

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +D++ WN+++G                         D  T+  +L AC  L+ LE G 
Sbjct: 276 VVKDIISWNTMVGELK---------------------PDSRTMACILPACASLSALERGK 314

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           ++H ++L+  Y  D  + NAL+D+Y KCG L  A  +F  +  KD++SW+ MI+G   +G
Sbjct: 315 EIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHG 374

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           Y  EA+  F  M+ + I+P+ ++ + +L+ACSH+G +E GW  F  MK  + I+P  EHY
Sbjct: 375 YGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHY 434

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +CM+DLL R G L +A K I  +P  PDA  W ALL  C+++ + +LA   A+++  L+P
Sbjct: 435 ACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEP 494

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF-NVADSSH 530
           ++ G Y+LL+NIYA ++KW+EV  +R+ +  +G+ K PGCSWIE+  +++ F +  +SSH
Sbjct: 495 ENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSH 554

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           P   KI   LK + +K+   GY P T Y L + +  QKE ++  HSEKLA+ FGL++L  
Sbjct: 555 PHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPP 614

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KTIR+ KNLR+CGDCH  AK  +K   + IV+RD  R+HHF+DG CSC  +W
Sbjct: 615 RKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 667



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/400 (29%), Positives = 201/400 (50%), Gaps = 31/400 (7%)

Query: 95  LVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK 154
           +V  +   G F+    L  I++   ++    E A  LFD++ +R+V+SW +MIS Y    
Sbjct: 33  MVSEYAKIGDFKESICLFKIMVEKGIEGKRSESASELFDKLCDRDVISWNSMISGYVSNG 92

Query: 155 MNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRS 211
           + ++ L +   M+  G+  ++ T  +VL  C    +L + + +H   IK  FE  +   +
Sbjct: 93  LTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSN 152

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
            L+D+Y+K G+L  A  VF +M  R++V W S+I G+ ++   D A+ L ++M++ G   
Sbjct: 153 TLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKL 212

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVF 329
           D   +TS+L AC     L+ G  VH ++   +   +L + NAL+DMY KCGS+E A SVF
Sbjct: 213 DVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVF 272

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
           S M+ KD+ISW+TM                     V  +KP+  T+  +L AC+    +E
Sbjct: 273 STMVVKDIISWNTM---------------------VGELKPDSRTMACILPACASLSALE 311

Query: 390 DGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
            G   H   ++  Y  D  R   + ++DL  + G L  A +L+ +M    D V+W  ++ 
Sbjct: 312 RGKEIHGYILRNGYSSD--RHVANALVDLYVKCGVLGLA-RLLFDMIPSKDLVSWTVMIA 368

Query: 449 ACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
              +H   + AI    ++ +   + P     +S +YA S 
Sbjct: 369 GYGMHGYGNEAIATFNEMRDAGIE-PDEVSFISILYACSH 407



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 162/318 (50%), Gaps = 39/318 (12%)

Query: 196 CGIIKVG---FES----DVFVRSALIDIYAKLGELRNAECVF------------------ 230
           CG +K G   F++    +V++ + ++  YAK+G+ + + C+F                  
Sbjct: 9   CGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRSESASE 68

Query: 231 --NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
             +++  RD++ WNS+I G+  N   +  L +YK+M   G   D +T+ SVL  C     
Sbjct: 69  LFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGT 128

Query: 289 LELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           L LG  VH   +K  ++  +  +N LLDMY KCG L+ A+ VF +M +++V+SW++MI+G
Sbjct: 129 LSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 188

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
             ++G+S  A+ L + M+   +K + + I  +L AC+ +G +++G +    +K     + 
Sbjct: 189 YTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK---ANNM 245

Query: 407 GREHYSC--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT---DLAIC 461
               + C  ++D+  + G ++ A  +   M  + D ++W  ++G  K    T    L  C
Sbjct: 246 ASNLFVCNALMDMYAKCGSMEGANSVFSTMVVK-DIISWNTMVGELKPDSRTMACILPAC 304

Query: 462 AAKKILNLDPQDPGTYIL 479
           A+   L    +  G YIL
Sbjct: 305 ASLSALERGKEIHG-YIL 321


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/485 (42%), Positives = 313/485 (64%), Gaps = 7/485 (1%)

Query: 166 MLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           MLR  V P+  ++S +LR+C       +    HC I+K+GFE D+ +++ L+D YAK G 
Sbjct: 21  MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGY 80

Query: 223 LRNAECVFNEMPTRDL--VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           +  A  +F+ M  R+   V WN++I  + Q  +   A++++++M+       + T+ S+L
Sbjct: 81  VEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLL 140

Query: 281 RACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
            AC  L  L++G  +H  +   +   D++L NAL+DMYCKCG+LE A+ VF  + +K++ 
Sbjct: 141 SACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIF 200

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
            W+++I GL  NG  +EA+  F  M+   IKP+ +T VG+L  CSH+G +  G  +F  M
Sbjct: 201 CWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEM 260

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
              YG++PG EHY CM+DLLGRAG L+EA++LI  MP +P+++   +LL AC++H++T L
Sbjct: 261 LGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKL 320

Query: 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNK 518
                +++L LDP D G Y+ LSN+YA+  +WD+V   RK M  RG+ K PGCS IEVN 
Sbjct: 321 GEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNN 380

Query: 519 QIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEK 578
            +H F   D+SHPQ  +IN  L  + ++L G G+ P+T  VL D+E E+KE +I+YHSE+
Sbjct: 381 IVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSER 440

Query: 579 LAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCS 638
           +A+ FGLMS   GKTIR+ KNLR C DCH+  KL +    + I++RD  R+HHF++G+CS
Sbjct: 441 IAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCS 500

Query: 639 CGDYW 643
           C DYW
Sbjct: 501 CNDYW 505



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 143/318 (44%), Gaps = 36/318 (11%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V     +++ +++ C      +  +  H  ++  GFE +  L   LL+ + K   +EEA+
Sbjct: 26  VLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEAR 85

Query: 130 VLFDQMPER--NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
            LFD M ER  N V+W TMISAY        A+ +   M  E V+P   T  ++L AC  
Sbjct: 86  NLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAH 145

Query: 188 LIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L  L     +H  I     + DV + +ALID+Y K G L  A  VF+ +  +++  WNSI
Sbjct: 146 LGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSI 205

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
           I G   N   +EA+  +  M++ G   D  T   +L  C+   LL  G +          
Sbjct: 206 IVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRY--------- 256

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
                              + + V+   ++  V  +  M+  L + GY +EAL+L  +M 
Sbjct: 257 -----------------FSEMLGVYG--LEPGVEHYGCMVDLLGRAGYLKEALELIRAMP 297

Query: 365 VSRIKPNYITIVGVLFAC 382
              +KPN + +  +L AC
Sbjct: 298 ---MKPNSMVLGSLLRAC 312



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 108/210 (51%), Gaps = 8/210 (3%)

Query: 258 LNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDM 315
           L  Y  M R      +++ + +LR+C      +LG   H  ++K  +++D+IL   LLD 
Sbjct: 15  LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDF 74

Query: 316 YCKCGSLEDAMSVFSRMIQK--DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           Y K G +E+A ++F  M ++  + ++W+TMIS   Q G    A+ +F+ M+   +KP  +
Sbjct: 75  YAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEV 134

Query: 374 TIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           T+V +L AC+H G ++ G W H     K   ID      + +ID+  + G L+ A+ + H
Sbjct: 135 TMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLG--NALIDMYCKCGALEAAIDVFH 192

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            +    +   W +++    ++   + AI A
Sbjct: 193 GLS-RKNIFCWNSIIVGLGMNGRGEEAIAA 221



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 125/312 (40%), Gaps = 41/312 (13%)

Query: 33  NTITRNSSSLLDDFTRFCYQR--DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAV 90
           N   RNS+S+  +     Y +  +   A+     MQ   V+   VT   L+  C    A+
Sbjct: 90  NMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGAL 149

Query: 91  EEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
           +  + +H ++ +   + +  L N L++M+ K   LE A  +F  +  +N+  W ++I   
Sbjct: 150 DMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGL 209

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL----RQLHCGIIKVGFESD 206
                 ++A+   I M +EG++P+  T+  +L  C    +L    R     +   G E  
Sbjct: 210 GMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPG 269

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
           V     ++D+  + G L+ A  +   MP +     NS++                     
Sbjct: 270 VEHYGCMVDLLGRAGYLKEALELIRAMPMKP----NSMV--------------------- 304

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALL-DMYCKCGSLEDA 325
                    L S+LRAC      +LG QV   +L+ D     N   L ++Y      +D 
Sbjct: 305 ---------LGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDV 355

Query: 326 MSVFSRMIQKDV 337
            +    MI++ V
Sbjct: 356 NTCRKLMIKRGV 367


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/586 (40%), Positives = 358/586 (61%), Gaps = 19/586 (3%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLS--GGFEPETFLVNILLNMHVKFSLLEEAQV 130
           D  T + +I  C     +    +   H LS   G +    + N L+  + K   L+EA+ 
Sbjct: 139 DGFTLSGIITAC----GINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARR 194

Query: 131 LFDQMPE-RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA---CD 186
           +F  + E R+ VSW +M+ AY   +   KALEL + M   G+  ++FT ++VL A     
Sbjct: 195 IFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQ 254

Query: 187 SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE-LRNAECVFNEMPTRDLVVWNSII 245
            L+   Q H  +IK G+  +  V S LID+Y+K G  + +   VF+E+   DLV+WN++I
Sbjct: 255 DLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMI 314

Query: 246 GGFAQNSDV-DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD- 303
            G++   D+ DEAL  +++++  G   D  +L  V+ AC+ ++    G QVH   LK D 
Sbjct: 315 SGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDI 374

Query: 304 --HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
             + + +NNAL+ MY KCG+L DA ++F  M + + +S+++MI+G AQ+G   ++L LF+
Sbjct: 375 PSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQ 434

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            M      P  IT + VL AC+H G VEDG  +F  MK+ +GI+P   H+SCMIDLLGRA
Sbjct: 435 RMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRA 494

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           GKL EA +LI  +P++P    W ALLGAC++H N +LAI AA ++L LDP +   Y++L+
Sbjct: 495 GKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLA 554

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
           NIY+++ +  + A VRK MR RG+ K+PGCSWIEVN++IH F   D+ HP I KI ++L+
Sbjct: 555 NIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLE 614

Query: 542 HLIQKLVGVGYAPDTNYVL--QDLEGEQKEDSIQ--YHSEKLAIVFGLMSLTQGKTIRIR 597
            +++K+  VGY P+    L   D    Q+E+ ++  +HSEKLA+ FGLMS  +G+ I + 
Sbjct: 615 EMMRKIKKVGYTPEVRSALVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVF 674

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLRIC DCH   K  +++  + I +RD  R+H F+DG CSCG YW
Sbjct: 675 KNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 130/429 (30%), Positives = 213/429 (49%), Gaps = 25/429 (5%)

Query: 40  SSLLDDFTRF----CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLAR-HAVEEAK 94
           SSLL +F +F       RDL R  K++HA+        S   +       ++   +  A+
Sbjct: 5   SSLLHNFRQFLKTCIAHRDL-RTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAAR 63

Query: 95  LVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK 154
            V +H      +   F  N L++ + K S +E A  LFD+MP+ + VS+ T+I+AY    
Sbjct: 64  RVFDHT----HDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRG 119

Query: 155 MNDKALELLIFMLREGVRPNMFTYSAVLRACD-SLIILRQLHCGIIKVGFESDVFVRSAL 213
               A +L + M    +  + FT S ++ AC  ++ ++RQLH   +  G +S V V +AL
Sbjct: 120 DTQPAFQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNAL 179

Query: 214 IDIYAKLGELRNAECVFNEMPT-RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           I  Y+K G L+ A  +F+ +   RD V WNS++  + Q+ +  +AL LY  M   G   D
Sbjct: 180 ITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVD 239

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGS-LEDAMSVF 329
             TL SVL A T +  L  G Q H  ++K  Y  +  + + L+D+Y KCG  + D   VF
Sbjct: 240 IFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVF 299

Query: 330 SRMIQKDVISWSTMISGLA-QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
             +   D++ W+TMISG +     S EAL+ F  ++V   +P+  ++V V+ ACS+    
Sbjct: 300 DEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSP 359

Query: 389 EDGWN-HFKSMKKFYGIDPGREHYS---CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
             G   H  ++K    +D      S    +I +  + G L++A  L   MP E + V++ 
Sbjct: 360 SQGRQVHGLALK----LDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYN 414

Query: 445 ALLGACKVH 453
           +++     H
Sbjct: 415 SMIAGYAQH 423



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 121/258 (46%), Gaps = 12/258 (4%)

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
           + +VF  + LI  YAK   +  A  +F+EMP  D V +N++I  +A+  D   A  L+  
Sbjct: 71  DCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLE 130

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK----YDHDLILNNALLDMYCKC 319
           M+ A    D  TL+ ++ AC     + +G    +H L      D  + + NAL+  Y K 
Sbjct: 131 MREAFLDMDGFTLSGIITACG----INVGLIRQLHALSVVTGLDSYVSVGNALITSYSKN 186

Query: 320 GSLEDAMSVFSRMIQ-KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
           G L++A  +F  + + +D +SW++M+    Q+    +AL+L+  M V  +  +  T+  V
Sbjct: 187 GFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASV 246

Query: 379 LFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           L A ++   +  G   H K +K   G        S +IDL  + G      + + +    
Sbjct: 247 LTAFTNVQDLLGGLQFHAKLIKS--GYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISN 304

Query: 438 PDAVTWRALLGACKVHRN 455
           PD V W  ++    ++ +
Sbjct: 305 PDLVLWNTMISGYSLYED 322



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 81/165 (49%), Gaps = 7/165 (4%)

Query: 299 VLKYDHD--LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           V  + HD  +   N L+  Y K   +E A  +F  M Q D +S++T+I+  A+ G +Q A
Sbjct: 65  VFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPA 124

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACS-HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
            +LF  M+ + +  +  T+ G++ AC  + G +        ++    G+D      + +I
Sbjct: 125 FQLFLEMREAFLDMDGFTLSGIITACGINVGLIR----QLHALSVVTGLDSYVSVGNALI 180

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
               + G L+EA ++ H +  + D V+W +++ A   HR    A+
Sbjct: 181 TSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKAL 225


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/586 (40%), Positives = 359/586 (61%), Gaps = 19/586 (3%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLS--GGFEPETFLVNILLNMHVKFSLLEEAQV 130
           D  T + +I  C     +    +   H LS   G +    + N L+  + K   L+EA+ 
Sbjct: 139 DGFTLSGIITAC----GINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARR 194

Query: 131 LFDQMPE-RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA---CD 186
           +F  + E R+ VSW +M+ AY   +   KALEL + M   G+  ++FT ++VL A     
Sbjct: 195 IFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQ 254

Query: 187 SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE-LRNAECVFNEMPTRDLVVWNSII 245
            L+   Q H  +IK G+  +  V S LID+Y+K G  + +   VF+E+   DLV+WN++I
Sbjct: 255 DLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMI 314

Query: 246 GGFAQNSDV-DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD- 303
            G++   D+ DEAL  +++++  G   D  +L  V+ AC+ ++    G QVH   LK D 
Sbjct: 315 SGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDI 374

Query: 304 --HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
             + + +NNAL+ MY KCG+L DA ++F  M + + +S+++MI+G AQ+G   ++L LF+
Sbjct: 375 PSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQ 434

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            M      P  IT + VL AC+H G VEDG  +F  MK+ +GI+P   H+SCMIDLLGRA
Sbjct: 435 RMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRA 494

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           GKL EA +LI  +P++P    W ALLGAC++H N +LAI AA ++L LDP +   Y++L+
Sbjct: 495 GKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLA 554

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
           NIY+++ +  + A VRK MR RG+ K+PGCSWIEVN++IH F   D+ HP I KI ++L+
Sbjct: 555 NIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLE 614

Query: 542 HLIQKLVGVGYAPD--TNYVLQDLEGEQKEDSIQ--YHSEKLAIVFGLMSLTQGKTIRIR 597
            +++K+  VGY P+  +  V  D    Q+E+ ++  +HSEKLA+ FGLMS  +G+ I + 
Sbjct: 615 EMMRKIKKVGYTPEVRSASVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVF 674

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLRIC DCH   K  +++  + I +RD  R+H F+DG CSCG YW
Sbjct: 675 KNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 131/446 (29%), Positives = 219/446 (49%), Gaps = 25/446 (5%)

Query: 40  SSLLDDFTRF----CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLAR-HAVEEAK 94
           SSLL  F +F       RDL R  K++HA+        S   +       ++   +  A+
Sbjct: 5   SSLLHSFRQFLKTCIAHRDL-RTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAAR 63

Query: 95  LVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK 154
            V +H      +   F  N L++ + K S +E A  LFD+MP+ + VS+ T+I+AY    
Sbjct: 64  RVFDHT----HDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRG 119

Query: 155 MNDKALELLIFMLREGVRPNMFTYSAVLRACD-SLIILRQLHCGIIKVGFESDVFVRSAL 213
               A +L + M    +  + FT S ++ AC  ++ ++RQLH   +  G +S V V +AL
Sbjct: 120 DTQPAFQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNAL 179

Query: 214 IDIYAKLGELRNAECVFNEMPT-RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           I  Y+K G L+ A  +F+ +   RD V WNS++  + Q+ +  +AL LY  M   G   D
Sbjct: 180 ITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVD 239

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGS-LEDAMSVF 329
             TL SVL A T +  L  G Q H  ++K  Y  +  + + L+D+Y KCG  + D   VF
Sbjct: 240 IFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVF 299

Query: 330 SRMIQKDVISWSTMISGLA-QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
             +   D++ W+TMISG +     S EAL+ F  ++    +P+  ++V V+ ACS+    
Sbjct: 300 DEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSP 359

Query: 389 EDGWN-HFKSMKKFYGIDPGREHYS---CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
             G   H  ++K    +D      S    +I +  + G L++A  L   MP E + V++ 
Sbjct: 360 SQGRQVHGLALK----LDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYN 414

Query: 445 ALLGACKVHRNTDLAICAAKKILNLD 470
           +++     H     ++   +++L +D
Sbjct: 415 SMIAGYAQHGMGFQSLHLFQRMLEMD 440


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/668 (36%), Positives = 377/668 (56%), Gaps = 43/668 (6%)

Query: 14  PSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD 73
           P      ++++I   +   N +  N+      F       D   A+K    M   G+  +
Sbjct: 10  PHFDGLSYAISIFETIQEPNLLIWNTM-----FRGHALNSDSVTALKLYVCMISLGLLPN 64

Query: 74  SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA----- 128
           S ++  L+K C    A+ E + +H HVL  G++ + ++   L++M+ +   LE+A     
Sbjct: 65  SYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFD 124

Query: 129 --------------------------QVLFDQMPERNVVSWTTMISAYCDAKMNDKALEL 162
                                     + LFD++  ++VVSW  MIS Y +     +ALEL
Sbjct: 125 RSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALEL 184

Query: 163 LIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
              M++  V+P+  T   V+ AC    S+ + RQLH  I   GF S++ + + LID+Y+K
Sbjct: 185 YKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSK 244

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
            GE+  A  +F  +  +D++ WN++IGG    +   EAL L++ M R+G + +  T+ SV
Sbjct: 245 CGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSV 304

Query: 280 LRACTGLALLELGTQVHVHVLKYDHDLI----LNNALLDMYCKCGSLEDAMSVFSRMIQK 335
           L AC  L  +++G  +HV++ K    +     L  +L+DMY KCG +E A  VF  M+ +
Sbjct: 305 LPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTR 364

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
            + SW+ MI G A +G +  A  LF  M+ + I P+ IT VG+L ACSH+G ++ G + F
Sbjct: 365 SLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIF 424

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN 455
           +SM + Y I P  EHY CMIDLLG  G  +EA ++I  MP EPD V W +LL ACK+H N
Sbjct: 425 RSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNN 484

Query: 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE 515
            +L    A+ ++ ++P++PG+Y+LLSNIYA + +WD+VA++R  +  +GI K PGCS IE
Sbjct: 485 VELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIE 544

Query: 516 VNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYH 575
           ++  +H F + D  HP+  +I + L+ +   +   G+ PDT+ VLQ++E E KE ++++H
Sbjct: 545 IDSVVHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEEWKEGALRHH 604

Query: 576 SEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDG 635
           SEKLAI FGL+S   G  + I KNLR+C +CH   KL +K+  + I+ RD  R H  +DG
Sbjct: 605 SEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHLLKDG 664

Query: 636 NCSCGDYW 643
             SC DYW
Sbjct: 665 VWSCHDYW 672


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/593 (38%), Positives = 347/593 (58%), Gaps = 27/593 (4%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           R +     M   G+  D  T   ++  C     +   K VH+  +   FE      N LL
Sbjct: 234 RGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLL 293

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   L+ A  +F++M ERNVVSWT+MI+ Y     +D A++LL  M +EGV+ ++ 
Sbjct: 294 DMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVV 353

Query: 177 TYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
             +++L AC    SL   + +H  I     ES++FV +AL+D+YAK G +  A  VF+ M
Sbjct: 354 AITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTM 413

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +D++ WN++IG                         D  T+  VL AC  L+ LE G 
Sbjct: 414 VVKDIISWNTMIGELK---------------------PDSRTMACVLPACASLSALERGK 452

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           ++H ++L+  Y  D  + NAL+D+Y KCG L  A  +F  +  KD++SW+ MI+G   +G
Sbjct: 453 EIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHG 512

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           Y  EA+  F  M+ + I+P+ ++ + +L+ACSH+G +E GW  F  MK  + I+P  EHY
Sbjct: 513 YGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHY 572

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +CM+DLL R G L +A + I  +P  PDA  W ALL  C+ + + +LA   A+++  L+P
Sbjct: 573 ACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEP 632

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF-NVADSSH 530
           ++ G Y+LL+NIYA ++KW+EV  +R+ +  +G+ K PGCSWIE+  +++ F +  +SSH
Sbjct: 633 ENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSH 692

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           P    I   LK + +K+   G+ P T Y L + +  QKE ++  HSEKLA+ FGL++L  
Sbjct: 693 PHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPP 752

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KTIR+ KNLR+CGDCH  AK  +K   + IV+RDP R+HHF+DG CSC  +W
Sbjct: 753 RKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDPNRFHHFKDGYCSCRGFW 805



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 143/539 (26%), Positives = 240/539 (44%), Gaps = 90/539 (16%)

Query: 13  KPSSQARQFSLTITP--PVASCNTITRNSSSLLDDFT----RFCYQRDLPRAMKAMHAMQ 66
           KPS + + FS   +   P+    T TR     + D+      FC   DL  AM+ +    
Sbjct: 34  KPSLKTKIFSPIFSSCIPIRISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELI--CM 91

Query: 67  CHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLS------------------------ 102
           C     ++ TY+ +++ C    +  + K VH+ + S                        
Sbjct: 92  CKKSELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLK 151

Query: 103 ---------------------------GGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
                                      G F+    L  I++   ++    E A  LFD++
Sbjct: 152 EGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKL 211

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILR 192
            +R+V+SW +MIS Y    + ++ L +   M+  G+  ++ T  +VL  C    +L + +
Sbjct: 212 CDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGK 271

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            +H   IK  FE  +   + L+D+Y+K G+L  A  VF +M  R++V W S+I G+ ++ 
Sbjct: 272 AVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDG 331

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNN 310
             D A+ L ++M++ G   D   +TS+L AC     L+ G  VH ++     + +L + N
Sbjct: 332 RSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCN 391

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           AL+DMY KCGS+E A SVFS M+ KD+ISW+TMI  L                     KP
Sbjct: 392 ALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGEL---------------------KP 430

Query: 371 NYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           +  T+  VL AC+    +E G   H   ++  Y  D  R   + ++DL  + G L  A +
Sbjct: 431 DSRTMACVLPACASLSALERGKEIHGYILRNGYSSD--RHVANALVDLYVKCGVLGLA-R 487

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
           L+ +M    D V+W  ++    +H   + AI    ++ +   + P     +S +YA S 
Sbjct: 488 LLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIE-PDEVSFISILYACSH 545


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/555 (40%), Positives = 329/555 (59%), Gaps = 36/555 (6%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L  A  +FD++P  +   + T+   Y   ++    + +   ML + V PN FTY  ++RA
Sbjct: 70  LNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRA 129

Query: 185 C--DSLIIL-RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C  D  I   +Q+H  ++K GF +D F  + LI +Y     L  A  VF+ MP RD+V W
Sbjct: 130 CCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSW 189

Query: 242 NSIIGGFAQNSDVD-------------------------------EALNLYKRMKRAGFA 270
            S+I G++Q   VD                               EA  L+ RM+     
Sbjct: 190 TSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVV 249

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSV 328
            D+    S+L ACTGL  LE G  +H ++ K   + D  L   ++DMYCKCG LE A  V
Sbjct: 250 LDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEV 309

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           F+ + QK + SW+ MI GLA +G  + A++LF+ M+   + P+ IT V VL AC+H+G V
Sbjct: 310 FNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLV 369

Query: 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
           E+G ++F+ M +  G+ PG EH+ CM+DLLGRAG L+EA KLI+EMP  PDA    AL+G
Sbjct: 370 EEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVG 429

Query: 449 ACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
           AC++H NT+L     KK++ L+P + G Y+LL+N+YA++ +W++VA+VRK M  RG+ K 
Sbjct: 430 ACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKA 489

Query: 509 PGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQK 568
           PG S IE    +  F     +HPQ  +I   L  +++ +  +GY PDT+ VL D++ E+K
Sbjct: 490 PGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEK 549

Query: 569 EDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIR 628
           E+ + YHSEKLAI FGL+    G+T+RI KNLRIC DCH  +KL +K+ ++ I+IRD  R
Sbjct: 550 ENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNR 609

Query: 629 YHHFQDGNCSCGDYW 643
           +HHF+ G CSC DYW
Sbjct: 610 FHHFRMGGCSCKDYW 624



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/395 (29%), Positives = 179/395 (45%), Gaps = 67/395 (16%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V  +  TY  LI+ C   +A+EE K +H HVL  GF  + F +N L++M+V F  LE+A+
Sbjct: 116 VSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQAR 175

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR--------------------- 168
            +FD MP+R+VVSWT++I+ Y      DKA E+   M                       
Sbjct: 176 RVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHE 235

Query: 169 ----------EGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALID 215
                     E V  + F  +++L AC  L  L Q   +H  I K G E D  + + +ID
Sbjct: 236 AFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVID 295

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           +Y K G L  A  VFNE+P + +  WN +IGG A +   + A+ L+K M+R   A D  T
Sbjct: 296 MYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGIT 355

Query: 276 LTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK 335
             +VL AC    L+E G     H  +Y  +++              L+  M  F      
Sbjct: 356 FVNVLSACAHSGLVEEGK----HYFQYMTEVL-------------GLKPGMEHF------ 392

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
                  M+  L + G  +EA KL   M V+   P+   +  ++ AC   G  E G    
Sbjct: 393 -----GCMVDLLGRAGLLEEARKLINEMPVN---PDAGVLGALVGACRIHGNTELGEQIG 444

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           K + +    + GR  Y  + +L   AG+ ++  K+
Sbjct: 445 KKVIELEPHNSGR--YVLLANLYASAGRWEDVAKV 477



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 21/223 (9%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RNS S       +     L  A      M+   V  D    A ++  C    A+E+ K +
Sbjct: 215 RNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWI 274

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H ++   G E ++ L   +++M+ K   LE+A  +F+++P++ + SW  MI         
Sbjct: 275 HGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKG 334

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIK------------VGFE 204
           + A+EL   M RE V P+  T+  VL AC         H G+++            +G +
Sbjct: 335 EAAIELFKEMEREMVAPDGITFVNVLSAC--------AHSGLVEEGKHYFQYMTEVLGLK 386

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIG 246
             +     ++D+  + G L  A  + NEMP   D  V  +++G
Sbjct: 387 PGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVG 429


>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/600 (37%), Positives = 350/600 (58%), Gaps = 38/600 (6%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           T +    D  +A++    M   GV ++  T+  ++  C +  A    + VH  ++  GF 
Sbjct: 288 TGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFG 347

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
              ++ + L++M+ K   L  A+ + + M + +VVSW +MI         ++A+ L   M
Sbjct: 348 CNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKM 407

Query: 167 LREGVRPNMFTYSAVLRACD-SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
               ++ + +T+ +VL  C    I  + +HC +IK GFE+   V +AL+D+YAK  +L  
Sbjct: 408 HARNMKIDHYTFPSVLNCCIVGRIDGKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNC 467

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VF +M  +D++ W S++ G+ QN   +E+L  +  M+ +G + DQ  + S+L AC  
Sbjct: 468 AYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAE 527

Query: 286 LALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L LLE G QVH   +K      L +NN+L+ MY KCG L+DA ++F  M  +DVI+W+ +
Sbjct: 528 LTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVITWTAL 587

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           I G A+NG  +++LK                                   +F+ MKK YG
Sbjct: 588 IVGYARNGKGRDSLK-----------------------------------YFQQMKKIYG 612

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           I+PG EHY+CMIDL GR GKL EA +++++M  +PDA  W+ALL AC+VH N +L   AA
Sbjct: 613 IEPGPEHYACMIDLFGRLGKLDEAKEILNQMDVKPDATVWKALLAACRVHGNLELGERAA 672

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
             +  L+P +   Y++LSN+Y  ++KWD+ A++R+ M+++GITKEPGCSWIE+N ++H F
Sbjct: 673 TNLFELEPMNAMPYVMLSNMYLAARKWDDAAKIRRLMKSKGITKEPGCSWIEMNSRLHTF 732

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
              D  HP+  +I   +  +I+++  VGY PD N+ L D++ E KE  + YHSEKLA+ F
Sbjct: 733 ISEDRGHPREAEIYSKIDEIIRRIKEVGYVPDMNFSLHDMDREGKEAGLAYHSEKLAVAF 792

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GL++   G  IRI KNLR+CGDCH+  K  + +  + I++RD   +HHF++G CSC DYW
Sbjct: 793 GLLASPPGAPIRIFKNLRVCGDCHSAMKYISGVFTRHIILRDSNCFHHFKEGECSCEDYW 852



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 142/472 (30%), Positives = 246/472 (52%), Gaps = 18/472 (3%)

Query: 42  LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL 101
           L+  + RF  Q +   A      M+  G +    T   +++ C A   +++ +++H +V+
Sbjct: 183 LISGYCRFGRQAE---AFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYVV 239

Query: 102 SGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP--ERNVVSWTTMISAYCDAKMNDKA 159
             GFE   ++V  L++M+ K   + EA++LF  +   + N V WT M++ Y     + KA
Sbjct: 240 KNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKA 299

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDI 216
           +E   +M  EGV  N FT+ ++L AC S+       Q+H  I++ GF  + +V+SAL+D+
Sbjct: 300 IEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDM 359

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           YAK G+L +A+ V   M   D+V WNS+I G  ++   +EA+ L+K+M       D  T 
Sbjct: 360 YAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTF 419

Query: 277 TSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
            SVL  C  +  ++ G  VH  V+K  +++  +++NAL+DMY K   L  A +VF +M +
Sbjct: 420 PSVLNCCI-VGRID-GKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNCAYAVFEKMFE 477

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
           KDVISW+++++G  QNG  +E+LK F  M++S + P+   +  +L AC+    +E G   
Sbjct: 478 KDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAELTLLEFGKQV 537

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL-GACKVH 453
                K  G+       + ++ +  + G L +A  +   M +  D +TW AL+ G  +  
Sbjct: 538 HSDFIKL-GLRSSLSVNNSLVTMYAKCGCLDDADAIFVSM-HVRDVITWTALIVGYARNG 595

Query: 454 RNTDLA--ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503
           +  D        KKI  ++P  P  Y  + +++    K DE  E+   M  +
Sbjct: 596 KGRDSLKYFQQMKKIYGIEP-GPEHYACMIDLFGRLGKLDEAKEILNQMDVK 646



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 193/380 (50%), Gaps = 50/380 (13%)

Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTM----------------------- 146
           F  N LLN   K   +++A+ LFD+M +R+  +W TM                       
Sbjct: 116 FHSNQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGFSSR 175

Query: 147 --------ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LH 195
                   IS YC      +A +L   M  EG +P+ +T  ++LR C +L ++++   +H
Sbjct: 176 SSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIH 235

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR--DLVVWNSIIGGFAQNSD 253
             ++K GFES+V+V + L+D+YAK   +  AE +F  +     + V+W +++ G+AQN D
Sbjct: 236 GYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGD 295

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNA 311
             +A+  ++ M   G  ++Q T  S+L AC+ ++    G QVH  +++  +  +  + +A
Sbjct: 296 DHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSA 355

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+DMY KCG L  A  V   M   DV+SW++MI G  ++G+ +EA+ LF+ M    +K +
Sbjct: 356 LVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKID 415

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY----SCMIDLLGRAGKLQEA 427
           + T   VL  C   G ++    H   +K       G E+Y    + ++D+  +   L  A
Sbjct: 416 HYTFPSVL-NCCIVGRIDGKSVHCLVIK------TGFENYKLVSNALVDMYAKTEDLNCA 468

Query: 428 VKLIHEMPYEPDAVTWRALL 447
             +  +M +E D ++W +L+
Sbjct: 469 YAVFEKM-FEKDVISWTSLV 487



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 140/271 (51%), Gaps = 12/271 (4%)

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
            + D +  + ++  YA +G L  A  +FN   +R  + W+S+I G+ +     EA +L+K
Sbjct: 142 LQRDEYTWNTMVSGYANVGRLVEARELFNGFSSRSSITWSSLISGYCRFGRQAEAFDLFK 201

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCG 320
           RM+  G    Q TL S+LR C+ L L++ G  +H +V+K  ++ ++ +   L+DMY KC 
Sbjct: 202 RMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCR 261

Query: 321 SLEDAMSVFSRMI--QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
            + +A  +F  +   + + + W+ M++G AQNG   +A++ F  M    ++ N  T   +
Sbjct: 262 HISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSI 321

Query: 379 LFACSHAG---FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435
           L ACS      F E    H   ++  +G +   +  S ++D+  + G L  A +++  M 
Sbjct: 322 LTACSSVSAHCFGEQ--VHGCIVRNGFGCNAYVQ--SALVDMYAKCGDLGSAKRVLENME 377

Query: 436 YEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
            + D V+W +++  C  H   + AI   KK+
Sbjct: 378 -DDDVVSWNSMIVGCVRHGFEEEAILLFKKM 407



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 42/191 (21%)

Query: 294 QVHVHVLKYDHDLIL-NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ--- 349
           QV +H +   +  I  +N LL+   K G ++DA  +F +M+Q+D  +W+TM+SG A    
Sbjct: 102 QVVMHNIADSYQSIFHSNQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGR 161

Query: 350 --------NGY--------------------SQEALKLFESMKVSRIKPNYITIVGVLFA 381
                   NG+                      EA  LF+ M++   KP+  T+  +L  
Sbjct: 162 LVEARELFNGFSSRSSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRG 221

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREH----YSCMIDLLGRAGKLQEAVKLIHEMPY- 436
           CS  G ++ G      M   Y +  G E      + ++D+  +   + EA  L   + + 
Sbjct: 222 CSALGLIQKG-----EMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFN 276

Query: 437 EPDAVTWRALL 447
           + + V W A++
Sbjct: 277 KGNHVLWTAMV 287


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/617 (35%), Positives = 369/617 (59%), Gaps = 19/617 (3%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL-SGG 104
            +  C       A++ +  M   GV  D  T + ++  C     +   K +H + L +G 
Sbjct: 270 LSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGS 329

Query: 105 FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
            +  +F+ + L++M+     +     +FD M +R +  W  MI+ Y   + +++AL L I
Sbjct: 330 LDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFI 389

Query: 165 FMLRE-GVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKL 220
            M    G+  N  T + V+ AC    +      +H  ++K G + D FV++AL+D+Y++L
Sbjct: 390 EMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRL 449

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK-----------RAGF 269
           G++  A+ +F +M  RDLV WN+II G+  +   ++AL +  +M+           R   
Sbjct: 450 GKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSL 509

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMS 327
             +  TL ++L +C  L+ L  G ++H + +K +   D+ + +AL+DMY KCG L+ +  
Sbjct: 510 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 569

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           VF ++  ++VI+W+ ++     +G SQ+A+ +   M V  +KPN +T + V  ACSH+G 
Sbjct: 570 VFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGM 629

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD-AVTWRAL 446
           V +G   F +MKK YG++P  +HY+C++DLLGRAG+++EA +LI+ +P   D A  W +L
Sbjct: 630 VNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSL 689

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           LGAC++H N ++   AA+ ++ L+P     Y+LL+NIY+++  W +  EVR+ M+A+G+ 
Sbjct: 690 LGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVR 749

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           KEPGCSWIE   ++H F   DSSHPQ +K+  +L+ L +++   GY PDT+ VL ++E +
Sbjct: 750 KEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEED 809

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
           +KE  +  HSEKLAI FG+++ + G  IR+ KNLR+C DCH   K  +K+ ++ I++RD 
Sbjct: 810 EKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKVVDREIILRDV 869

Query: 627 IRYHHFQDGNCSCGDYW 643
            R+HHF++G CSCGDYW
Sbjct: 870 RRFHHFKNGTCSCGDYW 886



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 207/391 (52%), Gaps = 16/391 (4%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV-NILLNMHVKFSLLEE 127
           G++ D+  +  L+K       ++  K +H HV   G+  ++  V N L+N++ K      
Sbjct: 88  GIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA 147

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC-- 185
              +FD++ ERN VSW ++IS+ C  +  + ALE    ML E V P+ FT  +V  AC  
Sbjct: 148 VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSN 207

Query: 186 ----DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
               + L++ +Q+H   ++ G E + F+ + L+ +Y K+G+L +++ +      RDLV W
Sbjct: 208 FPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTW 266

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N+++    QN    EAL   + M   G   D  T++SVL AC+ L +L  G ++H + LK
Sbjct: 267 NTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALK 326

Query: 302 ---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
               D +  + +AL+DMYC C  +     VF  M  + +  W+ MI+G AQN Y +EAL 
Sbjct: 327 NGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALL 386

Query: 359 LFESMKVSR-IKPNYITIVGVLFACSHAG-FVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           LF  M+ S  +  N  T+ GV+ AC  +G F +    H   +K+  G+D  R   + ++D
Sbjct: 387 LFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKR--GLDRDRFVQNALMD 444

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           +  R GK+  A ++  +M  + D VTW  ++
Sbjct: 445 MYSRLGKIDIAKRIFGKME-DRDLVTWNTII 474



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 105/215 (48%), Gaps = 9/215 (4%)

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           W  ++    +++ + EA+  Y  M   G   D     ++L+A   L  ++LG Q+H HV 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 301 KYDH---DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           K+ +    + + N L+++Y KCG       VF R+ +++ +SW+++IS L      + AL
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH---YSCM 414
           + F  M    ++P+  T+V V  ACS+    E G    K +   YG+  G  +    + +
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPE-GLLMGKQVHA-YGLRKGELNSFIINTL 238

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           + + G+ GKL  +  L+       D VTW  +L +
Sbjct: 239 VAMYGKMGKLASSKVLLGSFEGR-DLVTWNTVLSS 272


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/629 (37%), Positives = 363/629 (57%), Gaps = 56/629 (8%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R+D ++   ++  C +  AV + K VH + +  G   + F+ N L++ + K  L+E A  
Sbjct: 224 RSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVK 283

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL-----RAC 185
           +F+ M  ++VVSW  M++ Y  +     A EL   M +E +  +M T++AV+     R C
Sbjct: 284 VFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGC 343

Query: 186 --DSLIILRQL-------HC-GIIKV---------------------------------G 202
             ++L + RQ+       +C  II V                                 G
Sbjct: 344 SHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGG 403

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMP--TRDLVVWNSIIGGFAQNSDVDEALNL 260
            + D+ V +ALID+Y+K    + A  +F+++P   R++V W  +IGG AQ  D ++AL L
Sbjct: 404 EDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKL 463

Query: 261 YKRM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHD-LILNNALLD 314
           +  M  +  G A +  T++ +L AC  LA + +G Q+H +VL+   YD     + N L++
Sbjct: 464 FVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLIN 523

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           MY KCG ++ A  VF  M QK  ISW++M++G   +G   EAL +F+ M+ +   P+ IT
Sbjct: 524 MYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDIT 583

Query: 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
            + VL+ACSH G V+ G ++F SM   YG+ P  EHY+  IDLL R G+L +A K + +M
Sbjct: 584 FLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDM 643

Query: 435 PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494
           P EP AV W ALL AC+VH N +LA  A  K++ ++ ++ G+Y L+SNIYA + +W +VA
Sbjct: 644 PMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVA 703

Query: 495 EVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAP 554
            +R  M+  GI K PGCSW++  K   +F V D SHP   +I   L+ LI ++  +GY P
Sbjct: 704 RIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVP 763

Query: 555 DTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTA 614
           +TN+ L D++ E+K + +  HSEKLA+ +GL++   G  IRI KNLR+CGDCH+     +
Sbjct: 764 ETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYIS 823

Query: 615 KMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           K+ +  IV+RDP R+HHF++G+CSCG YW
Sbjct: 824 KIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 213/449 (47%), Gaps = 65/449 (14%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G R D  T   ++K C    +       H  +   GFE   F+ N L+ M+ +   LEEA
Sbjct: 112 GTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 171

Query: 129 QVLFDQMPER---NVVSWTTMISAYCDAKMNDKALEL---LIFMLRE---GVRPNMFTYS 179
            ++FD++ +R   +V+SW +++SA+  +     AL+L   +  ++ E     R ++ +  
Sbjct: 172 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 231

Query: 180 AVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
            +L AC SL  +   +++H   I+ G   DVFV +ALID YAK G + NA  VFN M  +
Sbjct: 232 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 291

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT------------------- 277
           D+V WN+++ G++Q+ +   A  L+K M++     D  T T                   
Sbjct: 292 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 351

Query: 278 ----------------SVLRACTGLALLELGTQVHVHVLK------------YDHDLILN 309
                           SVL AC  L     G ++H + LK             D DL++ 
Sbjct: 352 RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVY 411

Query: 310 NALLDMYCKCGSLEDAMSVFSRMI--QKDVISWSTMISGLAQNGYSQEALKLFESM--KV 365
           NAL+DMY KC S + A S+F  +   +++V++W+ MI G AQ G S +ALKLF  M  + 
Sbjct: 412 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 471

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS-CMIDLLGRAGKL 424
             + PN  TI  +L AC+H   +  G      + + +  D      + C+I++  + G +
Sbjct: 472 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDV 531

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             A  +   M  +  A++W +++    +H
Sbjct: 532 DTARHVFDSMS-QKSAISWTSMMTGYGMH 559



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 112/383 (29%), Positives = 182/383 (47%), Gaps = 59/383 (15%)

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
           + A ++ +++     V W  +I  +      D A+ +   MLR G R + FT   VL+AC
Sbjct: 68  DYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKAC 127

Query: 186 DSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR---DLV 239
             L   R     H  I   GFES+VF+ +AL+ +Y++ G L  A  +F+E+  R   D++
Sbjct: 128 GELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVI 187

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRM------KRAGFAADQSTLTSVLRACTGLALLELGT 293
            WNSI+    ++S+   AL+L+ +M      K     +D  ++ ++L AC  L  +    
Sbjct: 188 SWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTK 247

Query: 294 QVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN- 350
           +VH + ++     D+ + NAL+D Y KCG +E+A+ VF+ M  KDV+SW+ M++G +Q+ 
Sbjct: 248 EVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSG 307

Query: 351 -----------------------------GYSQ-----EALKLFESMKVSRIKPNYITIV 376
                                        GYSQ     EAL +F  M  S   PN +TI+
Sbjct: 308 NFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTII 367

Query: 377 GVLFACSHAGFVEDGWN-HFKSMKK--------FYGIDPGREHYSCMIDLLGRAGKLQEA 427
            VL AC+  G    G   H  S+K         F G D     Y+ +ID+  +    + A
Sbjct: 368 SVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAA 427

Query: 428 VKLIHEMPYEP-DAVTWRALLGA 449
             +  ++P E  + VTW  ++G 
Sbjct: 428 RSIFDDIPLEERNVVTWTVMIGG 450



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 125/269 (46%), Gaps = 35/269 (13%)

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
           F S   + + ++  Y   G    A  V   +     V WN +I    +   +D A+N+  
Sbjct: 47  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 106

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCG 320
           RM RAG   D  TL  VL+AC  L     G+  H  +    ++ ++ + NAL+ MY +CG
Sbjct: 107 RMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG 166

Query: 321 SLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESM------KVSRIKPN 371
           SLE+A  +F  + Q+   DVISW++++S   ++  +  AL LF  M      K +  + +
Sbjct: 167 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 226

Query: 372 YITIVGVLFACS-----------HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420
            I+IV +L AC            H   + +G      +  F G        + +ID   +
Sbjct: 227 IISIVNILPACGSLKAVPQTKEVHGNAIRNG----TFLDVFVG--------NALIDAYAK 274

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            G ++ AVK+ + M ++ D V+W A++  
Sbjct: 275 CGLMENAVKVFNMMEFK-DVVSWNAMVAG 302


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/632 (36%), Positives = 364/632 (57%), Gaps = 41/632 (6%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
            C Q+ L  A++ +   +    +  + TY  LI+ C    A+EE K VH H+ + GF P 
Sbjct: 64  LCGQKLLREAVQLLGRAK----KPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPG 119

Query: 109 TFLVNILLNMHVK-------------------------------FSLLEEAQVLFDQMPE 137
             + N LL M+ K                                 LLEEA+ LFD+M E
Sbjct: 120 IVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTE 179

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLR-EGVRPNMFTYSAVLRACDSLIILR---Q 193
           ++  SWT M++ Y      ++AL L   M R    RPN+FT S  + A  ++  +R   +
Sbjct: 180 KDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKE 239

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H  I++ G +SD  + S+L+D+Y K G +  A  +F+++  +D+V W S+I  + ++S 
Sbjct: 240 IHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSR 299

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNA 311
             E  +L+  +  +    ++ T   VL AC  L   ELG QVH ++ +  +D     +++
Sbjct: 300 WREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSS 359

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+DMY KCG++E A  V     + D++SW+++I G AQNG   EALK F+ +  S  KP+
Sbjct: 360 LVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPD 419

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
           ++T V VL AC+HAG VE G   F S+ + + +    +HY+C++DLL R+G+ ++   +I
Sbjct: 420 HVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVI 479

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
            EMP +P    W ++LG C  + N DLA  AA+++  ++P++P TY+ ++NIYA + KW+
Sbjct: 480 SEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWE 539

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
           E  ++RK M+  G+TK PG SW E+ ++ H F  AD+SHP  ++I + L+ L +K+   G
Sbjct: 540 EEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEG 599

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           Y P T+ VL D+E EQKE+++ YHSEKLA+ F ++S  +G  I++ KNLR C DCH   K
Sbjct: 600 YVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIK 659

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             + +  + I +RD  R+H F++G CSCGDYW
Sbjct: 660 FISNITKRKITVRDSTRFHCFENGQCSCGDYW 691


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/629 (37%), Positives = 363/629 (57%), Gaps = 56/629 (8%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R+D ++   ++  C +  AV + K VH + +  G   + F+ N L++ + K  L+E A  
Sbjct: 117 RSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVK 176

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL-----RAC 185
           +F+ M  ++VVSW  M++ Y  +     A EL   M +E +  +M T++AV+     R C
Sbjct: 177 VFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGC 236

Query: 186 --DSLIILRQL-------HC-GIIKV---------------------------------G 202
             ++L + RQ+       +C  II V                                 G
Sbjct: 237 SHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGG 296

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMP--TRDLVVWNSIIGGFAQNSDVDEALNL 260
            + D+ V +ALID+Y+K    + A  +F+++P   R++V W  +IGG AQ  D ++AL L
Sbjct: 297 EDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKL 356

Query: 261 YKRM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHD-LILNNALLD 314
           +  M  +  G A +  T++ +L AC  LA + +G Q+H +VL+   YD     + N L++
Sbjct: 357 FVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLIN 416

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           MY KCG ++ A  VF  M QK  ISW++M++G   +G   EAL +F+ M+ +   P+ IT
Sbjct: 417 MYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDIT 476

Query: 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
            + VL+ACSH G V+ G ++F SM   YG+ P  EHY+  IDLL R G+L +A K + +M
Sbjct: 477 FLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDM 536

Query: 435 PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494
           P EP AV W ALL AC+VH N +LA  A  K++ ++ ++ G+Y L+SNIYA + +W +VA
Sbjct: 537 PMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVA 596

Query: 495 EVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAP 554
            +R  M+  GI K PGCSW++  K   +F V D SHP   +I   L+ LI ++  +GY P
Sbjct: 597 RIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVP 656

Query: 555 DTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTA 614
           +TN+ L D++ E+K + +  HSEKLA+ +GL++   G  IRI KNLR+CGDCH+     +
Sbjct: 657 ETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYIS 716

Query: 615 KMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           K+ +  IV+RDP R+HHF++G+CSCG YW
Sbjct: 717 KIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 213/449 (47%), Gaps = 65/449 (14%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G R D  T   ++K C    +       H  +   GFE   F+ N L+ M+ +   LEEA
Sbjct: 5   GTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 64

Query: 129 QVLFDQMPER---NVVSWTTMISAYCDAKMNDKALEL---LIFMLRE---GVRPNMFTYS 179
            ++FD++ +R   +V+SW +++SA+  +     AL+L   +  ++ E     R ++ +  
Sbjct: 65  SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 124

Query: 180 AVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
            +L AC SL  +   +++H   I+ G   DVFV +ALID YAK G + NA  VFN M  +
Sbjct: 125 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 184

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT------------------- 277
           D+V WN+++ G++Q+ +   A  L+K M++     D  T T                   
Sbjct: 185 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 244

Query: 278 ----------------SVLRACTGLALLELGTQVHVHVLK------------YDHDLILN 309
                           SVL AC  L     G ++H + LK             D DL++ 
Sbjct: 245 RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVY 304

Query: 310 NALLDMYCKCGSLEDAMSVFSRMI--QKDVISWSTMISGLAQNGYSQEALKLFESM--KV 365
           NAL+DMY KC S + A S+F  +   +++V++W+ MI G AQ G S +ALKLF  M  + 
Sbjct: 305 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 364

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS-CMIDLLGRAGKL 424
             + PN  TI  +L AC+H   +  G      + + +  D      + C+I++  + G +
Sbjct: 365 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDV 424

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             A  +   M  +  A++W +++    +H
Sbjct: 425 DTARHVFDSMS-QKSAISWTSMMTGYGMH 452



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 166/343 (48%), Gaps = 59/343 (17%)

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           MLR G R + FT   VL+AC  L   R     H  I   GFES+VF+ +AL+ +Y++ G 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 223 LRNAECVFNEMPTR---DLVVWNSIIGGFAQNSDVDEALNLYKRM------KRAGFAADQ 273
           L  A  +F+E+  R   D++ WNSI+    ++S+   AL+L+ +M      K     +D 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSR 331
            ++ ++L AC  L  +    +VH + ++     D+ + NAL+D Y KCG +E+A+ VF+ 
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 332 MIQKDVISWSTMISGLAQN------------------------------GYSQ-----EA 356
           M  KDV+SW+ M++G +Q+                              GYSQ     EA
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 240

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKK--------FYGIDPG 407
           L +F  M  S   PN +TI+ VL AC+  G    G   H  S+K         F G D  
Sbjct: 241 LNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDED 300

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEP-DAVTWRALLGA 449
              Y+ +ID+  +    + A  +  ++P E  + VTW  ++G 
Sbjct: 301 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGG 343


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/610 (36%), Positives = 363/610 (59%), Gaps = 9/610 (1%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++LL  +++  +  D   A+     MQ  G R    T+A ++   +    +E  + VH+ 
Sbjct: 209 NALLTGYSKEGFNHD---AINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSF 265

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           V+   F    F+ N LL+ + K   + EA+ LF +MPE + +S+  +I+        +++
Sbjct: 266 VVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEES 325

Query: 160 LELLIFMLREGVRPNMFTYSAVLR-ACDSLIIL--RQLHCGIIKVGFESDVFVRSALIDI 216
           LEL   +         F ++ +L  A +SL +   RQ+H   I     S+V V ++L+D+
Sbjct: 326 LELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDM 385

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           YAK  +   A  +F ++  +  V W ++I G+ Q    ++ L L+  M RA   AD +T 
Sbjct: 386 YAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATY 445

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
            S+LRAC  LA L LG Q+H  +++     ++   +AL+DMY KCGS+++A+ +F  M  
Sbjct: 446 ASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPV 505

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
           ++ +SW+ +IS  AQNG    AL+ FE M  S ++PN ++ + +L ACSH G VE+G  +
Sbjct: 506 RNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQY 565

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR 454
           F SM + Y ++P REHY+ M+D+L R+G+  EA KL+  MP+EPD + W ++L +C++H+
Sbjct: 566 FNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHK 625

Query: 455 NTDLAICAAKKILNLDP-QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSW 513
           N +LAI AA ++ N+   +D   Y+ +SNIYA + +WD V +V+K +R RGI K P  SW
Sbjct: 626 NQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSW 685

Query: 514 IEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQ 573
           +E+ ++ H F+  D+SHPQ  +I + L  L +++   GY PD+   L +++ E K +S++
Sbjct: 686 VEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEVKVESLK 745

Query: 574 YHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQ 633
           YHSE++AI F L+S  +G  I + KNLR C DCH   K+ +K+ N+ I +RD  R+HHF 
Sbjct: 746 YHSERIAIAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFT 805

Query: 634 DGNCSCGDYW 643
           DG+CSC DYW
Sbjct: 806 DGSCSCKDYW 815



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 200/388 (51%), Gaps = 9/388 (2%)

Query: 68  HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           HG+  D +T A L+       +V E   VH HV+  G++    + N LL+ + K   L  
Sbjct: 133 HGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGL 192

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA--- 184
           A  LF  M E++ V++  +++ Y     N  A+ L   M   G RP+ FT++AVL A   
Sbjct: 193 ACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQ 252

Query: 185 CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
            D +   +Q+H  ++K  F  +VFV +AL+D Y+K   +  A  +F EMP  D + +N +
Sbjct: 253 MDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVL 312

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD- 303
           I   A N  V+E+L L++ ++   F   Q    ++L        LE+G Q+H   +  D 
Sbjct: 313 ITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDA 372

Query: 304 -HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
             ++++ N+L+DMY KC    +A  +F+ +  +  + W+ +ISG  Q G  ++ LKLF  
Sbjct: 373 ISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVE 432

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRA 421
           M  ++I  +  T   +L AC++   +  G   H + ++   G        S ++D+  + 
Sbjct: 433 MHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRS--GCLSNVFSGSALVDMYAKC 490

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           G ++EA+++  EMP   ++V+W AL+ A
Sbjct: 491 GSIKEALQMFQEMPVR-NSVSWNALISA 517



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 180/346 (52%), Gaps = 13/346 (3%)

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV 171
            N ++  ++K   L  A+ LFD M +R+VV+WT +I  Y       +A  L   M R G+
Sbjct: 76  TNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGM 135

Query: 172 RPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
            P+  T + +L      +S+  + Q+H  ++KVG++S + V ++L+D Y K   L  A  
Sbjct: 136 VPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACH 195

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           +F  M  +D V +N+++ G+++     +A+NL+ +M+  GF   + T  +VL A   +  
Sbjct: 196 LFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDD 255

Query: 289 LELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           +E G QVH  V+K +   ++ + NALLD Y K   + +A  +F  M + D IS++ +I+ 
Sbjct: 256 IEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITC 315

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGID 405
            A NG  +E+L+LF  ++ +R          +L   +++  +E G   H +++      D
Sbjct: 316 CAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIV----TD 371

Query: 406 PGREHY--SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
              E    + ++D+  +  K  EA ++  ++ ++  +V W AL+  
Sbjct: 372 AISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQ-SSVPWTALISG 416



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 129/260 (49%), Gaps = 30/260 (11%)

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           +V   + +I  Y K G L  A  +F+ M  R +V W  +IGG+AQ++   EA NL+  M 
Sbjct: 72  NVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMC 131

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLE 323
           R G   D  TL ++L   T    +    QVH HV+K  YD  L++ N+LLD YCK  SL 
Sbjct: 132 RHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLG 191

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
            A  +F  M +KD ++++ +++G ++ G++ +A+ LF  M+    +P+  T   VL A  
Sbjct: 192 LACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGI 251

Query: 384 HAGFVEDG-------------WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
               +E G             WN F +              + ++D   +  ++ EA KL
Sbjct: 252 QMDDIEFGQQVHSFVVKCNFVWNVFVA--------------NALLDFYSKHDRIVEARKL 297

Query: 431 IHEMPYEPDAVTWRALLGAC 450
            +EMP E D +++  L+  C
Sbjct: 298 FYEMP-EVDGISYNVLITCC 316


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/616 (35%), Positives = 366/616 (59%), Gaps = 42/616 (6%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           ++ D+ T+  +I  C      E AK +H+ VL  GF  + ++ N L++M+ +F+ L++A+
Sbjct: 111 LQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKAR 170

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELL-----IFM-LREGVRPNMFTYSAVLR 183
            +F++MP R+VVSW ++IS Y      ++ALE+      +FM +    +P++ T +++L+
Sbjct: 171 KVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQ 230

Query: 184 ACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           AC  L  L   + +H  +I  G+E D    + LI++YAK G L  ++ VF+ M  +D V 
Sbjct: 231 ACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVS 290

Query: 241 WNSIIGGFAQNSDVDEALNLYK-------------------------------RMKRAGF 269
           WNS+I  + QN  + ++L +++                               RM+  G 
Sbjct: 291 WNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGV 350

Query: 270 AADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMS 327
             D +T+ S+L  C+ LA    G ++H  +  L  + D+ + N L++MY KCGSL ++  
Sbjct: 351 TPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQ 410

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           VF  M  KDV++W+ +IS     G  ++A++ F  M+ + I P+++  V ++FACSH+G 
Sbjct: 411 VFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGL 470

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           VE+G N+F  MKK Y I+P  EHY+C++DLL R+  L +A   I  MP +PD+  W ALL
Sbjct: 471 VEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALL 530

Query: 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507
            AC++  +T++A   +++I+ L+P D G Y+L+SNIYA   KWD+V  +RK+++ARG+ K
Sbjct: 531 SACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKK 590

Query: 508 EPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQ 567
           +PGCSW+E+  +++ F        Q +++NK L  L   +   GY  +  +VL D++ ++
Sbjct: 591 DPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDE 650

Query: 568 KEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPI 627
           K D +  HSE+LAI FGL++   G  +++ KNLR+C DCHT  K  +K+  + +++RD  
Sbjct: 651 KRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDAN 710

Query: 628 RYHHFQDGNCSCGDYW 643
           R+H F+DG CSCGDYW
Sbjct: 711 RFHVFKDGACSCGDYW 726



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 115/373 (30%), Positives = 188/373 (50%), Gaps = 52/373 (13%)

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILR 192
           P  NV  W ++I A     +  +AL L     R  ++P+ +T+ +V+ AC  L+   + +
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            +H  ++ +GF SD+++ +ALID+Y +  +L  A  VF EMP RD+V WNS+I G+  N 
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 253 DVDEALNLYKRMKRA------GFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDH 304
             +EAL +Y +  +        F  D  T+TS+L+AC  L  LE G  VH +++   Y+ 
Sbjct: 196 YWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYEC 255

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           D   +N L++MY KCG+L  +  VFS M  KD +SW++MI+   QNG   ++LK+FE+MK
Sbjct: 256 DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMK 315

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP------------------ 406
              I    IT   ++ +C H+     G      M+   G+ P                  
Sbjct: 316 ARDI----ITWNTIIASCVHSEDCNLGLRMISRMRT-EGVTPDMATMLSILPVCSLLAAK 370

Query: 407 --GREHYSC---------------MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
             G+E + C               +I++  + G L+ + ++   M  + D VTW AL+ A
Sbjct: 371 RQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISA 429

Query: 450 CKVHRNTDLAICA 462
           C ++     A+ A
Sbjct: 430 CGMYGEGKKAVRA 442



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 180/373 (48%), Gaps = 25/373 (6%)

Query: 166 MLREGVRPNMFT-YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           +L E  R  +F+  S  L +  +   L +LH  II +G    V   + LI  YA   +  
Sbjct: 6   VLHECSRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPT 65

Query: 225 NAECVFN-EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           ++  VF    P+ ++ +WNSII     N    EAL+LY   +R     D  T  SV+ AC
Sbjct: 66  SSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINAC 125

Query: 284 TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
            GL   E+   +H  VL   +  DL + NAL+DMYC+   L+ A  VF  M  +DV+SW+
Sbjct: 126 AGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWN 185

Query: 342 TMISGLAQNGYSQEALKL-FESMK-----VSRIKPNYITIVGVLFACSHAGFVEDG-WNH 394
           ++ISG   NGY  EAL++ ++S+K     V++ KP+ +TI  +L AC H G +E G + H
Sbjct: 186 SLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVH 245

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR 454
              +   Y  D    +   +I++  + G L  + ++   M  + D+V+W +++    V+ 
Sbjct: 246 DYMITSGYECDTTASN--ILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMI---NVYI 299

Query: 455 NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE------ 508
                  + K   N+  +D  T+  +     +S+  +    +   MR  G+T +      
Sbjct: 300 QNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLS 359

Query: 509 --PGCSWIEVNKQ 519
             P CS +   +Q
Sbjct: 360 ILPVCSLLAAKRQ 372



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 21/227 (9%)

Query: 51  YQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           +  D    ++ +  M+  GV  D  T   ++  C    A  + K +H  +   G E +  
Sbjct: 331 HSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVP 390

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           + N+L+ M+ K   L  +  +F  M  ++VV+WT +ISA        KA+     M   G
Sbjct: 391 VGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAG 450

Query: 171 VRPNMFTYSAVLRACDSLIILRQLHCGIIKVGF------------ESDVFVRSALIDIYA 218
           + P+   + A++ AC         H G+++ G             E  +   + ++D+ +
Sbjct: 451 IVPDHVAFVAIIFACS--------HSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLS 502

Query: 219 KLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRM 264
           +   L  AE     MP + D  +W +++     + D + A  + +R+
Sbjct: 503 RSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERI 549


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/615 (36%), Positives = 343/615 (55%), Gaps = 75/615 (12%)

Query: 104 GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL 163
           G   + F+ + LL+ +++F    +A+ + D MP R VV W+ +I+A+      + A  LL
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 164 IFMLREGVRPNMFTYSAVL-------RACDSLIIL------------------------- 191
             M  +GV PN+ T++ ++       RA D+++ L                         
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDV 169

Query: 192 ------RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
                  QLH  ++K G   D  V +ALID+Y K G       VF+E    D+   N+++
Sbjct: 170 GDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALV 229

Query: 246 GGFAQNSDVDEAL-----------------------------------NLYKRMKRAGFA 270
            G ++N+ V EAL                                   +L++ M+  G  
Sbjct: 230 AGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIE 289

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSV 328
            +  T+  VL A   +A L  G   H   L+  + HD+ + +AL+DMY KCG + DA  +
Sbjct: 290 PNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMI 349

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           F  M  ++V+SW+ MI G A +G ++ A++LF SM+ S+ KP+ +T   VL ACS AG+ 
Sbjct: 350 FEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWT 409

Query: 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
           E+G ++F  M+  +GI P  EHY+CM+ LLGRAGKL +A  +I++MP+EPD   W +LLG
Sbjct: 410 EEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLG 469

Query: 449 ACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
           +C+VH N  LA  AA+ +  L+P++ G Y+LLSNIYA+ + WD V  +R  M+  G+ KE
Sbjct: 470 SCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKE 529

Query: 509 PGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQK 568
            GCSWIE+  ++H     DSSHP +  I + LKHL  ++  +G+AP T+YVL D+E ++K
Sbjct: 530 KGCSWIEIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEK 589

Query: 569 EDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIR 628
           +D +  HSEKLA+  GL+S + G  +++ KNLRICGDCH   K  +  E + I +RD  R
Sbjct: 590 DDILSVHSEKLAVALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNR 649

Query: 629 YHHFQDGNCSCGDYW 643
           +HHF+DG CSC DYW
Sbjct: 650 FHHFKDGKCSCADYW 664



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 164/374 (43%), Gaps = 80/374 (21%)

Query: 162 LLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
           +L F+      P+     + L++C +L + R LH      G   D FV S+L+  Y + G
Sbjct: 10  VLNFLRHVSFPPDPRLLPSALKSCSALRLARALHAAAAVAGVSRDAFVASSLLHAYLRFG 69

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK---------------- 265
              +A  V + MP R +V W+++I   A + D + A  L +RM+                
Sbjct: 70  ATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVS 129

Query: 266 ------RA-------------GFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--H 304
                 RA             GF  D + ++  L A   +  + +G Q+H +V+K     
Sbjct: 130 GLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRL 189

Query: 305 DLILNNALLDMYCKCGSLEDAMSVF----------------------------------- 329
           D  +  AL+DMY KCG  ++ + VF                                   
Sbjct: 190 DACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFV 249

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
            R I+ +V+SW+++++   QNG   EA+ LF  M+   I+PN +TI  VL A ++   + 
Sbjct: 250 GRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALM 309

Query: 390 DGWN-HFKSMKKFYGIDPGREHY--SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            G + H  S++K +  D     Y  S ++D+  + G++++A  +   MPY  + V+W A+
Sbjct: 310 HGRSAHCFSLRKGFHHDI----YVGSALVDMYAKCGRVRDARMIFEAMPYR-NVVSWNAM 364

Query: 447 LGACKVHRNTDLAI 460
           +G   +H   + A+
Sbjct: 365 IGGYAMHGEAENAV 378


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/438 (46%), Positives = 293/438 (66%), Gaps = 2/438 (0%)

Query: 208 FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
            V +AL+D+YAK G    A  VF +M  +D++ W S++ G   N   +EAL L+  M+  
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDA 325
           G   DQ  + +VL AC  L +LE G QVH + LK      L ++N+L+ MY KCG +EDA
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             VF  M  +DVI+W+ +I G AQNG  +E+L  +  M  S +KP++IT +G+LFACSHA
Sbjct: 123 NKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHA 182

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G VE G ++F+SM++ YGI PG EHY+CMIDLLGR+GKL EA +L+++M  +PDA  W+A
Sbjct: 183 GLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKA 242

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LL AC+VH N +L   AA  +  L+P++   Y+LLSN+Y+ + KW+E A+ R+ M+ RG+
Sbjct: 243 LLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGV 302

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
           +KEPGCSWIE++ ++H F   D SHP+  +I   +  ++  +   GY PD N+ L D++ 
Sbjct: 303 SKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDE 362

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           E KE  + YHSEKLA+ FGL+++  G  IRI KNLRICGDCHT  K  + + ++ +++RD
Sbjct: 363 EGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRD 422

Query: 626 PIRYHHFQDGNCSCGDYW 643
              +HHF++G CSC DYW
Sbjct: 423 SNCFHHFREGACSCSDYW 440



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 163/351 (46%), Gaps = 46/351 (13%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N L++M+ K    + A  +F++M +++V+SWT++++        ++AL L   M   G+ 
Sbjct: 6   NALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIH 65

Query: 173 PNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P+    +AVL AC  L +L   +Q+H   +K G  S + V ++L+ +YAK G + +A  V
Sbjct: 66  PDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKV 125

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F+ M  +D++ W ++I G+AQN    E+LN Y  M  +G   D  T   +L AC+   L+
Sbjct: 126 FDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLV 185

Query: 290 ELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           E G                            S+E+        I+     ++ MI  L +
Sbjct: 186 EHGRSYF-----------------------QSMEEVYG-----IKPGPEHYACMIDLLGR 217

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           +G   EA +L   M V   +P+      +L AC   G VE G    ++    + ++P   
Sbjct: 218 SGKLMEAKELLNQMAV---QPDATVWKALLAACRVHGNVELGE---RAANNLFELEPKNA 271

Query: 410 -HYSCMIDLLGRAGKLQEAVKL-----IHEMPYEPDAVTWRALLGACKVHR 454
             Y  + +L   AGK +EA K      +  +  EP   +W  +  + KVHR
Sbjct: 272 VPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEP-GCSWIEM--SSKVHR 319



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 101/212 (47%), Gaps = 21/212 (9%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A++    M+  G+  D +  A ++  C     +E  K VH + L  G      + N L+
Sbjct: 51  EALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLV 110

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   +E+A  +FD M  ++V++WT +I  Y       ++L     M+  GV+P+  
Sbjct: 111 SMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFI 170

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVG---FES--DVFV-------RSALIDIYAKLGELR 224
           T+  +L AC         H G+++ G   F+S  +V+         + +ID+  + G+L 
Sbjct: 171 TFIGLLFACS--------HAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLM 222

Query: 225 NAECVFNEMPTR-DLVVWNSIIGGFAQNSDVD 255
            A+ + N+M  + D  VW +++     + +V+
Sbjct: 223 EAKELLNQMAVQPDATVWKALLAACRVHGNVE 254


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/583 (39%), Positives = 355/583 (60%), Gaps = 27/583 (4%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R + V++  +I   L    +++AK + + +     E +  +V  ++  + +   L+EA+ 
Sbjct: 142 RRNVVSWTVMIGGLLKESRIDDAKKLFDMIP----EKDVVVVTNMIGGYCQVGRLDEARE 197

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           LFD+M  RNV +WTTM+S Y      D A +L   M       N  +++A+L        
Sbjct: 198 LFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPER----NEVSWTAML-------- 245

Query: 191 LRQLHCGIIKVGFE-------SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
           +     G +K  FE         +   + +I  +   GE+  A  +F  M  RD   WN+
Sbjct: 246 MGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNA 305

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-- 301
           +I  F +     EAL L+ RM+R G A +  ++ SVL  C  LA L+ G QVH  +++  
Sbjct: 306 MIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSE 365

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
           +D DL + + L+ MY KCG L  A  +F+R + KDV+ W++MI+G +Q+G  +EAL +F 
Sbjct: 366 FDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFH 425

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            M  S ++P+ +T +GVL ACS++G V++G+  F++MK  Y ++PG EHY+CM+DLLGRA
Sbjct: 426 DMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRA 485

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           G++ EA++L+ +MP EPDA+ W ALLGAC+ H   DLA  A +K+  L+P++ G Y+LLS
Sbjct: 486 GRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLS 545

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS-SHPQIDKINKHL 540
           ++YA   +W +V  +RK +  R + K PGCSWIEV K++H F   DS SHP+   I + L
Sbjct: 546 HMYATKGRWRDVEVLRKKINRR-VIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQML 604

Query: 541 KHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNL 600
           + L   L   GY PD ++VL D++ E+K  S+ YHSE+LA+ +GL+ + +G  IR+ KNL
Sbjct: 605 EKLSGFLREAGYCPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNL 664

Query: 601 RICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           R+CGDCH+  KL AK+  + I++RD  R+HHF+DG+CSC D+W
Sbjct: 665 RVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 189/408 (46%), Gaps = 25/408 (6%)

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
           T   N +++ +VK  ++ +A+ +FD MPERNVVSWT+M+  Y    M ++A +L   M R
Sbjct: 83  TVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPR 142

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGF----ESDVFVRSALIDIYAKLGELR 224
                N+ +++ ++       +L++      K  F    E DV V + +I  Y ++G L 
Sbjct: 143 R----NVVSWTVMIGG-----LLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLD 193

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
            A  +F+EM  R++  W +++ G+A+N  VD A  L++ M      +  + L    ++  
Sbjct: 194 EARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGR 253

Query: 285 GLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
                EL   + V  +   +++IL   L       G +  A  +F  M ++D  +W+ MI
Sbjct: 254 MKEAFELFEAMPVKWIVACNEMILQFGL------AGEMHRARMMFEGMKERDEGTWNAMI 307

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYG 403
               + G   EAL LF  M+   +  N+ +++ VL  C+    ++ G   H + ++  + 
Sbjct: 308 KVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEF- 366

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
            D      S +I +  + G L  A  + +   ++ D V W +++     H   + A+   
Sbjct: 367 -DQDLYVASVLITMYVKCGDLVRAKGIFNRFLFK-DVVMWNSMITGYSQHGLGEEALNVF 424

Query: 464 KKILNLDPQ-DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
             + +   Q D  T+I + +  + S K  E  E+ + M+      EPG
Sbjct: 425 HDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCT-YQVEPG 471



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 151/327 (46%), Gaps = 58/327 (17%)

Query: 125 LEEAQVLFDQ--MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
           +  A+ +FD   +P+R + SW  M+SAY ++                  +P         
Sbjct: 35  IHNARKVFDNTPLPQRTIASWNAMVSAYFESH-----------------KPR-------- 69

Query: 183 RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
              D+L++  Q+         + +    + +I  Y K G + +A  VF+ MP R++V W 
Sbjct: 70  ---DALLLFDQMP--------QRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWT 118

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY 302
           S++ G+ Q   V+EA  L+  M R    +    +  +L+         +     +  +  
Sbjct: 119 SMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKES------RIDDAKKLFDMIP 172

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           + D+++   ++  YC+ G L++A  +F  M  ++V +W+TM+SG A+NG    A KLFE 
Sbjct: 173 EKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEV 232

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC--MIDLLGR 420
           M     + N ++   +L   + +G +++ +  F++M       P +   +C  MI   G 
Sbjct: 233 MP----ERNEVSWTAMLMGYTQSGRMKEAFELFEAM-------PVKWIVACNEMILQFGL 281

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALL 447
           AG++  A +++ E   E D  TW A++
Sbjct: 282 AGEMHRA-RMMFEGMKERDEGTWNAMI 307



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 99/206 (48%), Gaps = 21/206 (10%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  GV  +  +   ++  C +  +++  + VH  ++   F+ + ++ ++L+ M+VK   
Sbjct: 326 MQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGD 385

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L  A+ +F++   ++VV W +MI+ Y    + ++AL +   M   GV+P+  T+  VL A
Sbjct: 386 LVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSA 445

Query: 185 CDSLIILRQLHCGIIKVGF------------ESDVFVRSALIDIYAKLGELRNAECVFNE 232
           C         + G +K GF            E  +   + ++D+  + G +  A  +  +
Sbjct: 446 CS--------YSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEK 497

Query: 233 MPTR-DLVVWNSIIGGFAQNSDVDEA 257
           MP   D +VW +++G    +  +D A
Sbjct: 498 MPMEPDAIVWGALLGACRNHMKLDLA 523



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 137/325 (42%), Gaps = 66/325 (20%)

Query: 211 SALIDIYAKLGELRNAECVFNE--MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           ++ I  Y ++G++ NA  VF+   +P R +  WN+++  + ++    +AL L+ +M +  
Sbjct: 23  TSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQ-- 80

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSV 328
                                               + +  N ++  Y K G + DA  V
Sbjct: 81  -----------------------------------RNTVSFNGMISGYVKNGMVADARKV 105

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           F  M +++V+SW++M+ G  Q G  +EA KLF  M   R   ++  ++G L   S    +
Sbjct: 106 FDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMP-RRNVVSWTVMIGGLLKESR---I 161

Query: 389 EDGWNHFKSMKKFYGIDPGRE--HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
           +D        KK + + P ++    + MI    + G+L EA +L  EM    +  TW  +
Sbjct: 162 DDA-------KKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVR-NVFTWTTM 213

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQ-DPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           +     +   D+    A+K+  + P+ +  ++  +   Y  S +  E  E+ + M  + I
Sbjct: 214 VSGYAKNGRVDV----ARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWI 269

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSH 530
                   +  N+ I  F +A   H
Sbjct: 270 --------VACNEMILQFGLAGEMH 286


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/593 (39%), Positives = 344/593 (58%), Gaps = 37/593 (6%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            +K    M    VR D  T+  ++K C     +   + +H      G     F+ N L++
Sbjct: 124 GVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVS 183

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L EA+++ D+M  R+VVSW +++  Y   +  D ALE+   M    +  +  T
Sbjct: 184 MYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGT 243

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
            +++L A  +                E+ ++V+    D++ K+G+             + 
Sbjct: 244 MASLLPAVSNTTT-------------ENVMYVK----DMFFKMGK-------------KS 273

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           LV WN +IG + +N+   EA+ LY RM+  GF  D  ++TSVL AC   + L LG ++H 
Sbjct: 274 LVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHG 333

Query: 298 HV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           ++   K   +L+L NAL+DMY KCG LE A  VF  M  +DV+SW+ MIS    +G   +
Sbjct: 334 YIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCD 393

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           A+ LF  ++ S + P+ I  V  L ACSHAG +E+G + FK M   Y I P  EH +CM+
Sbjct: 394 AVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMV 453

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           DLLGRAGK++EA + I +M  EP+   W ALLGAC+VH +TD+ + AA K+  L P+  G
Sbjct: 454 DLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSG 513

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
            Y+LLSNIYA + +W+EV  +R  M+++G+ K PG S +EVN+ IH F V D SHPQ D+
Sbjct: 514 YYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDE 573

Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ----- 590
           I + L  L++K+  +GY PD+   L D+E E KE  +  HSEKLAIVF LM+  +     
Sbjct: 574 IYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDS 633

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             TIRI KNLRICGDCH  AKL +++ ++ I+IRD  R+H F+ G CSCGDYW
Sbjct: 634 NNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 172/365 (47%), Gaps = 48/365 (13%)

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
           + VH+ ++       + L   L+  +     +  A+ +FD++PERNV+    MI +Y + 
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVR 210
               + +++   M    VRP+ +T+  VL+AC    +++I R++H    KVG  S +FV 
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
           + L+ +Y K G L  A  V +EM  RD+V WNS++ G+AQN   D+AL + + M+    +
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFS 330
            D  T+ S+L A +      +                       MY K         +F 
Sbjct: 239 HDAGTMASLLPAVSNTTTENV-----------------------MYVK--------DMFF 267

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
           +M +K ++SW+ MI    +N    EA++L+  M+    +P+ ++I  VL AC     +  
Sbjct: 268 KMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSL 327

Query: 391 GWNHFKSMKKFYG------IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           G       KK +G      + P     + +ID+  + G L++A  +   M    D V+W 
Sbjct: 328 G-------KKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSR-DVVSWT 379

Query: 445 ALLGA 449
           A++ A
Sbjct: 380 AMISA 384



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 138/286 (48%), Gaps = 18/286 (6%)

Query: 175 MFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +F    VL     +  LR +H  II      +  +   L+  YA L ++ +A  VF+E+P
Sbjct: 42  VFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIP 101

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            R++++ N +I  +  N    E + ++  M       D  T   VL+AC+    + +G +
Sbjct: 102 ERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRK 161

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H    K      L + N L+ MY KCG L +A  V   M ++DV+SW++++ G AQN  
Sbjct: 162 IHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQR 221

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAG-----FVEDGWNHFKSMKKFYGIDPG 407
             +AL++   M+  +I  +  T+  +L A S+       +V+D +  FK  KK       
Sbjct: 222 FDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMF--FKMGKK------S 273

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMP---YEPDAVTWRALLGAC 450
              ++ MI +  +     EAV+L   M    +EPDAV+  ++L AC
Sbjct: 274 LVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPAC 319


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/591 (38%), Positives = 349/591 (59%), Gaps = 6/591 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++ + +M    ++   +T   ++    A   +   K +H + +  GF+    +   L++
Sbjct: 220 ALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVD 279

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   LE A+ LFD M ERNVVSW +MI AY   +   +A+ +   ML EGV+P   +
Sbjct: 280 MYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVS 339

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
               L AC  L  L   R +H   +++G + +V V ++LI +Y K  E+  A  +F ++ 
Sbjct: 340 VMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQ 399

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
           +R LV WN++I GFAQN    +ALN + +M+      D  T  SV+ A   L++      
Sbjct: 400 SRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKW 459

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  V++   D ++ +  AL+DMY KCG++  A  +F  M ++ V +W+ MI G   +G+
Sbjct: 460 IHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGF 519

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            + AL+LFE M+   IKPN +T + V+ ACSH+G VE G   F  MK+ Y I+   +HY 
Sbjct: 520 GKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYG 579

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
            M+DLLGRAG+L EA   I +MP +P    + A+LGAC++H+N + A  AA+++  L+P 
Sbjct: 580 AMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPD 639

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           D G ++LL+NIY  +  W++V +VR +M  +G+ K PGCS +E+  ++H+F    ++HP 
Sbjct: 640 DGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPD 699

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
             KI   L+ LI  +   GY PDTN VL  +E + KE  +  HSEKLAI FGL++ T G 
Sbjct: 700 SKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGT 758

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           TI +RKNLR+C DCH   K  + +  + IV+RD  R+HHF++G CSCGDYW
Sbjct: 759 TIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/411 (30%), Positives = 215/411 (52%), Gaps = 9/411 (2%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           F    DL +A++    M+   V      +  L+K C     +   K +H  ++  GF  +
Sbjct: 110 FAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLD 169

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F +  L NM+ K   + EA+ +FD+MPER++VSW T+++ Y    M   ALE++  M  
Sbjct: 170 LFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCE 229

Query: 169 EGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           E ++P+  T  +VL A  +L ++   +++H   ++ GF+S V + +AL+D+YAK G L  
Sbjct: 230 ENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLET 289

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F+ M  R++V WNS+I  + QN +  EA+ ++++M   G      ++   L AC  
Sbjct: 290 ARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACAD 349

Query: 286 LALLELGTQVH-VHV-LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L  LE G  +H + V L  D ++ + N+L+ MYCKC  ++ A S+F ++  + ++SW+ M
Sbjct: 350 LGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAM 409

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFY 402
           I G AQNG   +AL  F  M+   +KP+  T V V+ A +         W H   M+   
Sbjct: 410 ILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRS-- 467

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            +D      + ++D+  + G +  A +LI +M  E    TW A++     H
Sbjct: 468 CLDKNVFVTTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTH 517



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/375 (28%), Positives = 198/375 (52%), Gaps = 8/375 (2%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           +++E + +   V   G   E F    L+++  ++  ++EA  +F+ +  +  V + TM+ 
Sbjct: 49  SLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLK 108

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFES 205
            +      DKAL+  + M  + V P ++ ++ +L+ C     L + +++H  ++K GF  
Sbjct: 109 GFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSL 168

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           D+F  + L ++YAK  ++  A  VF+ MP RDLV WN+I+ G++QN     AL + K M 
Sbjct: 169 DLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMC 228

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLE 323
                    T+ SVL A + L L+ +G ++H + ++   D ++N   AL+DMY KCGSLE
Sbjct: 229 EENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLE 288

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
            A  +F  M++++V+SW++MI    QN   +EA+ +F+ M    +KP  ++++G L AC+
Sbjct: 289 TARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACA 348

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
             G +E G      +    G+D      + +I +  +  ++  A  +  ++      V+W
Sbjct: 349 DLGDLERG-RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRT-LVSW 406

Query: 444 RAL-LGACKVHRNTD 457
            A+ LG  +  R  D
Sbjct: 407 NAMILGFAQNGRPID 421



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 170/313 (54%), Gaps = 10/313 (3%)

Query: 168 REGVRPNMFTYSA--VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           R  +  N++ + A  +L  C SL  LRQ+   + K G   + F ++ L+ ++ + G +  
Sbjct: 28  RNYIPANVYEHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDE 87

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VF  + ++  V++++++ GFA+ SD+D+AL  + RM+           T +L+ C  
Sbjct: 88  AARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGD 147

Query: 286 LALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
            A L +G ++H  ++K  +  DL     L +MY KC  + +A  VF RM ++D++SW+T+
Sbjct: 148 EAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTI 207

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFY 402
           ++G +QNG ++ AL++ +SM    +KP++ITIV VL A S    +  G   H  +M+   
Sbjct: 208 VAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRS-- 265

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           G D      + ++D+  + G L+ A +L   M  E + V+W +++ A   + N   A+  
Sbjct: 266 GFDSLVNISTALVDMYAKCGSLETARQLFDGM-LERNVVSWNSMIDAYVQNENPKEAMLI 324

Query: 463 AKKILN--LDPQD 473
            +K+L+  + P D
Sbjct: 325 FQKMLDEGVKPTD 337


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/590 (39%), Positives = 353/590 (59%), Gaps = 5/590 (0%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++  H  +    +    TY+ +IK C     +  A+ +H+ VL  GF  +  ++  +++
Sbjct: 286 ALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMD 345

Query: 118 MHVKFSLLEEAQVLFDQMP-ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
            + K   L++A  +F  MP  +NVVSWT MI           A  L   M  + V+PN F
Sbjct: 346 AYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEF 405

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           TYS VL A    I+L Q+H  IIK  ++    V +AL+  Y+KLG    A  +F  +  +
Sbjct: 406 TYSTVLTASIP-ILLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHK 464

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG-LALLELGTQV 295
           D+V W++++  ++Q  D D A N++ +M   G   ++ T++S + AC    A ++ G Q 
Sbjct: 465 DVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQF 524

Query: 296 HVHVLKYDHD--LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H   +KY +   + + +AL+ MY + GS++ A  VF R   +D++SW++MISG AQ+GYS
Sbjct: 525 HAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYS 584

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
           +EAL  F  M+   I+ +  T + V+  C+HAG V++G  +F SM   + I P  EHYSC
Sbjct: 585 KEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSC 644

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           M+DL  RAGKL E + LI  MP+   A+ WR LLGAC+VH+N +L   AA+K+L L+P D
Sbjct: 645 MVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDD 704

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQI 533
             TY+LLSNIYA + +W E  EVRK M ++ + KE GCSWI++  ++H+F   D SHP  
Sbjct: 705 SATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLS 764

Query: 534 DKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT 593
           ++I   LK +  +L   GY P+T+ VL D+  EQKE  +  HSE+LA+ FGL++      
Sbjct: 765 EQIYAKLKAMTTRLKQEGYCPNTSVVLHDIAEEQKETMLVMHSERLALAFGLIATPPRTP 824

Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           ++I KNLR+CGDCH   K+ + +E++ I++RD  R+HHF  G CSCGD+W
Sbjct: 825 LQIVKNLRVCGDCHMVMKMVSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/423 (29%), Positives = 211/423 (49%), Gaps = 11/423 (2%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN  +     T +   R     M     M+  GV  +  T+  ++    ++ AV+  + V
Sbjct: 164 RNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRV 223

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H   +  G     F+ N L+NM+ K  L+EEA+ +F QM  R++VSW T+++     +  
Sbjct: 224 HAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQ 283

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSAL 213
            +AL+L         + +  TYS V++ C     L + RQLH  ++K GF SD  V +A+
Sbjct: 284 LEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAI 343

Query: 214 IDIYAKLGELRNAECVFNEMP-TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           +D Y+K GEL +A  +F  MP ++++V W ++IGG  QN+D+  A  L+ RM+      +
Sbjct: 344 MDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPN 403

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
           + T ++VL A   + L     Q+H  ++K  Y H   +  ALL  Y K G+ E+A+S+F 
Sbjct: 404 EFTYSTVLTASIPILL----PQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFK 459

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            +  KDV++WS M+S  +Q G    A  +F  M +  +KPN  TI   + AC+      D
Sbjct: 460 MIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGID 519

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
               F ++   Y         S ++ +  R G +  A +++ E   + D V+W +++   
Sbjct: 520 QGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSA-RIVFERQTDRDLVSWNSMISGY 578

Query: 451 KVH 453
             H
Sbjct: 579 AQH 581



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 200/391 (51%), Gaps = 27/391 (6%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE-PETFLVNILLNMHVKFSLLEEAQ 129
           R      + ++K C         + +H   +  GF+  E  +   L++M++K   +E+ +
Sbjct: 96  RVQGAAVSRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGR 155

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS-- 187
           V+F+ MP+RNVV+WT++++ Y   +     + L   M  EGV PN FT+++VL A  S  
Sbjct: 156 VVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQG 215

Query: 188 -LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            + + R++H   +K G  S VFV ++LI++Y+K G +  A+ VF +M TRD+V WN+++ 
Sbjct: 216 AVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMA 275

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDH 304
           G   N    EAL L+   + +     QST ++V++ C  L  L L  Q+H  VLK  +  
Sbjct: 276 GLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHS 335

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMI-QKDVISWSTMISGLAQNGYSQEALKLFESM 363
           D  +  A++D Y KCG L+DA ++F  M   ++V+SW+ MI G  QN     A  LF  M
Sbjct: 336 DGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRM 395

Query: 364 KVSRIKPNYITIVGVLFAC-------SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           +   +KPN  T   VL A         HA  ++  + H  S+             + ++ 
Sbjct: 396 REDNVKPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAPSVG------------TALLA 443

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
              + G  +EA+  I +M    D V W A+L
Sbjct: 444 SYSKLGNTEEALS-IFKMIDHKDVVAWSAML 473


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/593 (37%), Positives = 357/593 (60%), Gaps = 7/593 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A++  H M+  G + D V    +I              +H + +  G + +  + N L+
Sbjct: 402 EALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLV 461

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ KF  ++    +FD+MP+++VVSWTT+I+ +     + +ALEL   +  EG+  ++ 
Sbjct: 462 DMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVM 521

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
             S++L AC  L ++   +++H  II+ G  SD+ +++ ++D+Y + G +  A  +F  +
Sbjct: 522 MISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVLQNGIVDVYGECGNVDYAARMFELI 580

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +D+V W S+I  +  N   +EAL L+  MK  G   D  +L S+L A   L+ L+ G 
Sbjct: 581 EFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGK 640

Query: 294 QVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           ++H  +++    L   L + L+DMY +CG+LE + +VF+ +  KD++ W++MI+    +G
Sbjct: 641 EIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHG 700

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
             + A+ LF  M+   I P++I  V VL+ACSH+G + +G    +SMK  Y ++P  EHY
Sbjct: 701 CGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHY 760

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
            C++DLLGRA  L+EA + +  M  EP A  W ALLGAC++H N +L   AA+K+L +DP
Sbjct: 761 VCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDP 820

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
           ++PG Y+L+SN+YA  ++W +V EVR  M+A G+ K PGCSWIEV  ++H F   D SHP
Sbjct: 821 ENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHP 880

Query: 532 QIDKINKHLKHLIQKLVGV-GYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           Q  +I   L  + +KL    GY   T +VL + + E+K   +  HSE+LAI +G+++  +
Sbjct: 881 QSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTPE 940

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           G ++RI KNLR+CGDCH F KL +K   + +V+RD  R+HHF+ G CSCGD W
Sbjct: 941 GASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 993



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/400 (32%), Positives = 212/400 (53%), Gaps = 20/400 (5%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  G+  D+ T+  ++K C           VH   +  G+    F+ N ++ M+ K + 
Sbjct: 207 MRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCND 266

Query: 125 LEEAQVLFDQMPER-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
           L  A+ LFD+MPE+ +VVSW +MISAY     + +AL L   M +  + PN +T+ A L+
Sbjct: 267 LNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQ 326

Query: 184 ACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           AC+    ++Q   +H  ++K  +  +VFV +ALI +YA+ G++  A  +F  M   D + 
Sbjct: 327 ACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTIS 386

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           WNS++ GF QN    EAL  Y  M+ AG   D   + S++ A         G Q+H + +
Sbjct: 387 WNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAM 446

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K   D DL + N+L+DMY K  S++    +F +M  KDV+SW+T+I+G AQNG    AL+
Sbjct: 447 KNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALE 506

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF--YGIDPGREHY---SC 413
           LF  +++  I  + + I  +L ACS       G     S+K+   Y I  G       + 
Sbjct: 507 LFREVQLEGIDLDVMMISSILLACS-------GLKLISSVKEIHSYIIRKGLSDLVLQNG 559

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           ++D+ G  G +  A ++   + ++ D V+W +++ +C VH
Sbjct: 560 IVDVYGECGNVDYAARMFELIEFK-DVVSWTSMI-SCYVH 597



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 204/382 (53%), Gaps = 11/382 (2%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVL-SGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ 134
            Y+ +++ C ++ A+ E + VH H++ S       FL   L+ M+ K   L +A+ LFD 
Sbjct: 116 AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 175

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR-- 192
           MP + + +W  MI AY        +LEL   M   G+  +  T+  +L+AC  L   R  
Sbjct: 176 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCG 235

Query: 193 -QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQ 250
            ++H   IK G+ S VFV ++++ +Y K  +L  A  +F+ MP + D+V WNS+I  ++ 
Sbjct: 236 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 295

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
           N    EAL L+  M++A  A +  T  + L+AC   + ++ G  +H  VLK  Y  ++ +
Sbjct: 296 NGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFV 355

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            NAL+ MY + G + +A ++F  M   D ISW++M+SG  QNG   EAL+ +  M+ +  
Sbjct: 356 ANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQ 415

Query: 369 KPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           KP+ + ++ ++ A + +G   +G   H  +MK   G+D   +  + ++D+  +   ++  
Sbjct: 416 KPDLVAVISIIAASARSGNTLNGMQIHAYAMKN--GLDSDLQVGNSLVDMYAKFCSMKYM 473

Query: 428 VKLIHEMPYEPDAVTWRALLGA 449
             +  +MP + D V+W  ++  
Sbjct: 474 DCIFDKMP-DKDVVSWTTIIAG 494


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/522 (41%), Positives = 324/522 (62%), Gaps = 38/522 (7%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK-ALELLIFMLREGVRPNMFTYSAVLR 183
           +++++ +F+QMPE NV+SWT +I+AY  +   DK A+EL   M+   V            
Sbjct: 11  VDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASV------------ 58

Query: 184 ACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
                      +C            V ++LI +YA+ G + +A   F+ +  ++LV +N+
Sbjct: 59  -----------NC------------VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNA 95

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-- 301
           I+ G+A+N   +EA  L+  +   G      T  S+L     +  +  G Q+H  +LK  
Sbjct: 96  IVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGG 155

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
           Y  +  + NAL+ MY +CG++E A  VF+ M  ++VISW++MI+G A++G++  AL++F 
Sbjct: 156 YKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFH 215

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            M  +  KPN IT V VL ACSH G + +G  HF SM K +GI P  EHY+CM+DLLGR+
Sbjct: 216 KMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRS 275

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           G L EA++ I+ MP   DA+ WR LLGAC+VH NT+L   AA+ IL  +P DP  YILLS
Sbjct: 276 GLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLS 335

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
           N++A++ +W +V ++RK+M+ R + KE GCSWIEV  ++H F+V ++SHPQ  +I + L 
Sbjct: 336 NLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELD 395

Query: 542 HLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
            L  K+  +GY PDT++VL D+E EQKE  +  HSEK+A+ FGL+S +Q K IRI KNLR
Sbjct: 396 QLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLR 455

Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +CGDCHT  K  +    + IV+RD  R+HH ++G CSC DYW
Sbjct: 456 VCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 497



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 136/250 (54%), Gaps = 9/250 (3%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N L++M+ +   +E+A+  FD + E+N+VS+  ++  Y     +++A  L   +   G+ 
Sbjct: 63  NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIG 122

Query: 173 PNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
            + FT++++L    S+  +    Q+H  ++K G++S+  + +ALI +Y++ G +  A  V
Sbjct: 123 ISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQV 182

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           FNEM  R+++ W S+I GFA++     AL ++ +M   G   ++ T  +VL AC+ + ++
Sbjct: 183 FNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMI 242

Query: 290 ELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMI 344
             G Q H + +  +H ++        ++D+  + G L +AM   + M +  D + W T++
Sbjct: 243 SEG-QKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLL 301

Query: 345 SGLAQNGYSQ 354
                +G ++
Sbjct: 302 GACRVHGNTE 311



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 96/184 (52%), Gaps = 5/184 (2%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+   + T+A L+    +  A+ + + +H  +L GG++    + N L++M+ +   +E A
Sbjct: 120 GIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAA 179

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
             +F++M +RNV+SWT+MI+ +       +ALE+   ML  G +PN  TY AVL AC  +
Sbjct: 180 FQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHV 239

Query: 189 IILRQLHCGIIKVGFESDVFVR----SALIDIYAKLGELRNAECVFNEMP-TRDLVVWNS 243
            ++ +       +  E  +  R    + ++D+  + G L  A    N MP   D +VW +
Sbjct: 240 GMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRT 299

Query: 244 IIGG 247
           ++G 
Sbjct: 300 LLGA 303



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 109/243 (44%), Gaps = 44/243 (18%)

Query: 216 IYAKL---GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD-EALNLYKRMKRAGFAA 271
           +YAK    G + ++  VF +MP  +++ W +II  + Q+ + D EA+ L+ +M  A    
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASV-- 58

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
                      C G                        N+L+ MY + G +EDA   F  
Sbjct: 59  ----------NCVG------------------------NSLISMYARSGRMEDARKAFDI 84

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           + +K+++S++ ++ G A+N  S+EA  LF  +  + I  +  T   +L   +  G +  G
Sbjct: 85  LFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKG 144

Query: 392 WN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
              H + +K   G    +   + +I +  R G ++ A ++ +EM  + + ++W +++   
Sbjct: 145 EQIHGRLLKG--GYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGF 201

Query: 451 KVH 453
             H
Sbjct: 202 AKH 204


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/584 (39%), Positives = 352/584 (60%), Gaps = 10/584 (1%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V  +S T   ++      +++   K +H   +  GF  +  +   +L+++ K   ++ A+
Sbjct: 216 VSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYAR 275

Query: 130 VLFDQMP-ERNVVSWTTMISAYCDAKMNDKALELL--IFMLREGVRP-NMFTYSAVLRAC 185
            +FD M   +N V+W+ M+ AY       +ALEL   + ML++ V   +  T + V+R C
Sbjct: 276 RIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVC 335

Query: 186 DSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
            +L  L     LHC  IK GF  D+ V + L+ +YAK G +  A   FNEM  RD V + 
Sbjct: 336 ANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFT 395

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL-- 300
           +II G+ QN + +E L ++  M+ +G   +++TL SVL AC  LA L  G+  H + +  
Sbjct: 396 AIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIIC 455

Query: 301 KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
            +  D ++ NAL+DMY KCG ++ A  VF RM ++ ++SW+TMI     +G   EAL LF
Sbjct: 456 GFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLF 515

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420
           ++M+   +KP+ +T + ++ ACSH+G V +G   F +M + +GI P  EHY+CM+DLL R
Sbjct: 516 DNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSR 575

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480
           AG  +E    I +MP EPD   W ALL AC+V++N +L    +KKI  L P+  G ++LL
Sbjct: 576 AGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLL 635

Query: 481 SNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF-NVADSSHPQIDKINKH 539
           SN+Y+   +WD+ A+VR T + +G  K PGCSWIE++  +H F      SHPQ+ +I+  
Sbjct: 636 SNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNK 695

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
           L  L+ ++  +GY  +++YV QD+E E+KE  + YHSEKLAI FG++SL+  K I + KN
Sbjct: 696 LDELLVEMKRLGYQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGILSLSPDKHIIVTKN 755

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           LR+CGDCHT  K  + +  + I +RD  R+HHF+DG C+CGD+W
Sbjct: 756 LRVCGDCHTAIKFISLVTKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 210/410 (51%), Gaps = 21/410 (5%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+   + M  +G+  +  T+  ++K C A     E + +H  +     E   ++   L++
Sbjct: 103 AIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVD 162

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            + K   L++A+ +FD+M +R+VV+W +MIS +   + +   +  L+  ++  V PN  T
Sbjct: 163 FYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSST 222

Query: 178 YSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
              VL A   +  LR   ++H   ++ GF  DV V + ++D+Y K   +  A  +F+ M 
Sbjct: 223 IVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMG 282

Query: 235 -TRDLVVWNSIIGGFAQNSDVDEALNLYKR---MKRAGFAADQSTLTSVLRACTGLALLE 290
             ++ V W++++G +     + EAL L+ +   +K         TL +V+R C  L  L 
Sbjct: 283 IVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLS 342

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            GT +H + +K  +  DL++ N LL MY KCG +  AM  F+ M  +D +S++ +ISG  
Sbjct: 343 TGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYV 402

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH-AGFVEDGWNHFKSMKKFYGIDPG 407
           QNG S+E L++F  M++S I P   T+  VL AC+H AG       H+ S    Y I  G
Sbjct: 403 QNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGL------HYGSCSHCYAIICG 456

Query: 408 --REHYSC--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
              +   C  +ID+  + GK+  A K+   M ++   V+W  ++ A  +H
Sbjct: 457 FTADTMICNALIDMYAKCGKIDTARKVFDRM-HKRGIVSWNTMIIAYGIH 505



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 145/499 (29%), Positives = 236/499 (47%), Gaps = 62/499 (12%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEP-ETFLVNI------LLNMHVKFSLLEEAQVLF 132
           L++ C+   ++   KL+H H+L       ET L N       L+++++  S L+ A+ +F
Sbjct: 15  LLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVF 74

Query: 133 DQMPER--NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           D+MP R  NVV W  +I AY      ++A++L   ML  G+ PN FT+  VL+AC +L  
Sbjct: 75  DKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKE 134

Query: 191 L---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
               R++HC I ++  ES+V+V +AL+D YAK G L +A+ VF++M  RD+V WNS+I G
Sbjct: 135 ASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISG 194

Query: 248 FA-QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDH 304
           F+      DE   L  +M+    + + ST+  VL A   +  L  G ++H   ++  +  
Sbjct: 195 FSLHEGSYDEVARLLVQMQN-DVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVG 253

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFES- 362
           D+++   +LD+Y KC  ++ A  +F  M I K+ ++WS M+       + +EAL+LF   
Sbjct: 254 DVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQL 313

Query: 363 --MKVSRIKPNYITIVGVLFACSH----------------AGFVED--GWNHFKSMKKFY 402
             +K   I  + +T+  V+  C++                +GFV D    N   SM    
Sbjct: 314 LMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKC 373

Query: 403 GIDPGREHYSCMIDLLG------------RAGKLQEAVKLIHEMPYE---PDAVTWRALL 447
           GI  G   +   +DL              + G  +E +++  EM      P+  T  ++L
Sbjct: 374 GIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVL 433

Query: 448 GACKVHRNTDLAICA-AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
            AC          C+    I+     D      L ++YA   K D   +V   M  RGI 
Sbjct: 434 PACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIV 493

Query: 507 KEPGCSWIEVNKQIHAFNV 525
                SW   N  I A+ +
Sbjct: 494 -----SW---NTMIIAYGI 504



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 109/245 (44%), Gaps = 21/245 (8%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           R++ S     + +    +    ++    MQ  G+  +  T A ++  C     +      
Sbjct: 389 RDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCS 448

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H + +  GF  +T + N L++M+ K   ++ A+ +FD+M +R +VSW TMI AY    + 
Sbjct: 449 HCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIG 508

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVG------FESDVFV- 209
            +AL L   M  EG++P+  T+  ++ AC         H G++  G         D  + 
Sbjct: 509 LEALLLFDNMQSEGLKPDDVTFICLISACS--------HSGLVAEGKYWFNAMTQDFGII 560

Query: 210 -----RSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKR 263
                 + ++D+ ++ G  +       +MP   D+ VW +++       +V+    + K+
Sbjct: 561 PRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKK 620

Query: 264 MKRAG 268
           +++ G
Sbjct: 621 IQKLG 625


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/576 (38%), Positives = 331/576 (57%), Gaps = 8/576 (1%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEP-ETFLVNILLNMHVKFSLLEEAQVLFDQ 134
           + A L++  ++       +  H  ++     P  +F+ N L+NM+ K      AQ+L   
Sbjct: 8   SLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSL 67

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IIL 191
            P R+VV+WT +I+          AL     M R+ ++PN FT+    +A  SL   ++ 
Sbjct: 68  TPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVG 127

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           +Q+H   +K G  SDVFV  +  D+Y+K G    A  +F+EMP R++  WN+ +      
Sbjct: 128 KQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLE 187

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILN 309
              D+AL  +   ++ G       ++SVL AC GL++LE+G  VH   +K     ++ + 
Sbjct: 188 GRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVG 247

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS--R 367
           +AL+DMY KCGS+EDA   F  M ++++++W+ MI G A  G +  A+ LF+ M     R
Sbjct: 248 SALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHR 307

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           + PNY+T V VL ACS AG V  G   F+SM+  YGI+PG EHY+C++DLLGRAG +++A
Sbjct: 308 VAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQA 367

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487
            + I +MP  P    W ALLGA K+   ++L   AA  +  LDP D G ++LLSN++A +
Sbjct: 368 YQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAA 427

Query: 488 QKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL 547
            +W+E   VRK M+  GI K  GCSWI     +H F   D+SH +  +I   L  L  ++
Sbjct: 428 GRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEM 487

Query: 548 VGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCH 607
              GY PDT++ L DLE E+K   + YHSEK+A+ FGL+S+  G  IRI KNLRICGDCH
Sbjct: 488 EAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCH 547

Query: 608 TFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +  K  + +  + I++RD   +H F+D  CSC DYW
Sbjct: 548 SAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 583



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 23/204 (11%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+ A    +  G+       + ++  C     +E  K VH   +        F+ + L++
Sbjct: 193 ALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVD 252

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML--REGVRPNM 175
           M+ K   +E+A+  FD+MPERN+V+W  MI  Y      D A+ L   M      V PN 
Sbjct: 253 MYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNY 312

Query: 176 FTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVR------------SALIDIYAKLGEL 223
            T+  VL AC           G + VG E    +R            + ++D+  + G +
Sbjct: 313 VTFVCVLSACS--------RAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMV 364

Query: 224 RNAECVFNEMPTRDLV-VWNSIIG 246
             A     +MP R  V VW +++G
Sbjct: 365 EQAYQFIKKMPIRPTVSVWGALLG 388


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/593 (38%), Positives = 349/593 (58%), Gaps = 6/593 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A+     M     + ++VT + ++        +  AK VH   + GGFE   F+   L+
Sbjct: 105 EAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALV 164

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ KF  +  A+ LF+ M ERNVVSW  ++S Y D   +++A++L   M R+G+  + +
Sbjct: 165 DMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFY 224

Query: 177 TYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T  +++ A  S+  L+    +H  II+ G+E+D  +++AL+DIY     + +A  VF+EM
Sbjct: 225 TIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEM 284

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELG 292
             +D+  W  ++ GF+     D A+  + +M        D   L  +L +C+    L+ G
Sbjct: 285 FVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQG 344

Query: 293 TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
            +VH   +K  + +++ + +A++DMY  CG+LEDA   F  M +KDV+ W+ MI+G   N
Sbjct: 345 RRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMN 404

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
           GY  +A+ LF  MK S + P+  T V VL+ACSHAG V +G   F  M K     P  +H
Sbjct: 405 GYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQH 464

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
           Y+C+ID+LGRAG+L  A   I+ MP++PD   +  LLGAC++H N  L    ++KI  ++
Sbjct: 465 YACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEME 524

Query: 471 PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSH 530
           P D G Y+LLSN+YA +  W+ V   R ++R++ + K+PG S IE+N++I+ F   +  H
Sbjct: 525 PNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDH 584

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           PQ  KI   LK LI K+   GY P+TN +LQD+  + K+D + +HSEK+AI FGLM    
Sbjct: 585 PQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKP 644

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           G  IRI KNLR C DCH+ +K  +K+  + +VI+D  R+H FQDG CSC DYW
Sbjct: 645 GTIIRITKNLRTCNDCHSASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 129/404 (31%), Positives = 223/404 (55%), Gaps = 19/404 (4%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  +++ G    TFL N L+N +V   LL +A+ +F   P +NVVSWT +IS       
Sbjct: 43  IHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDC 102

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSA 212
             +A+++   M     +PN  T S+VL A  +L ++R    +HC  ++ GFE +VFV +A
Sbjct: 103 FVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETA 162

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           L+D+Y+K G +  A  +F  M  R++V WN+I+ G++ +   +EA++L+  M+R G   D
Sbjct: 163 LVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVD 222

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
             T+ S++ A   +  L++GT +H  +++  Y++D  +  AL+D+Y     ++DA  VFS
Sbjct: 223 FYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFS 282

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVE 389
            M  KDV +W+ M++G +   +   A+K F  M  +  +K + I ++G+L +CSH+G ++
Sbjct: 283 EMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQ 342

Query: 390 DGWN-HFKSMKKFYG--IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            G   H  ++K  +   I  G    S +ID+    G L++A +  + M  E D V W A+
Sbjct: 343 QGRRVHALAIKTCFANNIFVG----SAVIDMYANCGNLEDAKRFFYGMG-EKDVVCWNAM 397

Query: 447 LGACKVH-RNTD-LAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
           +    ++   TD + +    K   LDP D  T++  S +YA S 
Sbjct: 398 IAGNGMNGYGTDAIDLFLQMKGSGLDP-DESTFV--SVLYACSH 438



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 157/295 (53%), Gaps = 4/295 (1%)

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           +++++LR    L  L+Q+H  II  G   + F+ ++L++ Y   G L +A+ +F+  P +
Sbjct: 26  SHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCK 85

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           ++V W  +I G A+N    EA+++++ M    F  +  T++SVL A   L L+ +   VH
Sbjct: 86  NVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVH 145

Query: 297 VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
              ++  ++ ++ +  AL+DMY K G +  A  +F  M +++V+SW+ ++SG + +G+S+
Sbjct: 146 CFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSE 205

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414
           EA+ LF  M+   +  ++ TI+ ++ A    G ++ G      + +  G +  +   + +
Sbjct: 206 EAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIR-TGYENDKHIKTAL 264

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
           +D+      + +A ++  EM +  D   W  +L      R+ D AI    K+L +
Sbjct: 265 MDIYVSHNCVDDAHRVFSEM-FVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGI 318


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/554 (37%), Positives = 347/554 (62%), Gaps = 6/554 (1%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           VH H++  G      L+  L+++      +  A+ LF  +P  +   + +++        
Sbjct: 110 VHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGF 169

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSA 212
           +   +     ML  G   + +T+++V++AC  L  LR   ++H  ++  G+ SD++V++A
Sbjct: 170 SIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAA 229

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           LI +YAK  +++ A+ VF+ MP R ++ WNS+I G+ QN    E++ L+  M  +GF  D
Sbjct: 230 LIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPD 289

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFS 330
            +T+ S+L +C+ L  L+ G  +H +     +D +++L  +L++MY +CG++  A  VF 
Sbjct: 290 SATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFD 349

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            M +++V++W+ MISG   +GY ++A++LF  M+    +PN IT V VL AC+H+G ++D
Sbjct: 350 SMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDD 409

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE-MPYEPDAVTWRALLGA 449
           G   F SMK+ YG+ PG EH  CM+D+ GRAG L +A + I + +P EP    W ++LGA
Sbjct: 410 GRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGA 469

Query: 450 CKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEP 509
           C++HRN DL +  A+ +L+++P++PG Y++LSNIYA + + D V  VR  M  R + K+ 
Sbjct: 470 CRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQV 529

Query: 510 GCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKE 569
           G S IE+N++ + F++ D SHPQ + I ++L  L+ +    GY P    ++ DLE E+++
Sbjct: 530 GYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERD 589

Query: 570 DSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRY 629
            +++YHSEKLA+ FGL+   QG+TIRI KNLRIC DCH+  K  + + ++ I++RD  R+
Sbjct: 590 YALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRF 649

Query: 630 HHFQDGNCSCGDYW 643
           HHF+DG+CSC DYW
Sbjct: 650 HHFKDGSCSCLDYW 663



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 147/285 (51%), Gaps = 10/285 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G    + T+  +IK C    A+   K +H+HV+  G+  + ++   L+ ++ K S ++ A
Sbjct: 184 GAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVA 243

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +FD MP+R +++W ++IS Y    +  +++ L   M+  G +P+  T  ++L +C  L
Sbjct: 244 KKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQL 303

Query: 189 IILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             L     LH      GF+ +V + ++LI++Y + G +  A  VF+ M  R++V W ++I
Sbjct: 304 GALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMI 363

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD 305
            G+  +    +A+ L+  M+  G   +  T  +VL AC    L++ G +V    +K  + 
Sbjct: 364 SGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRV-FSSMKEAYG 422

Query: 306 LIL----NNALLDMYCKCGSLEDAMSVFSRMIQKD--VISWSTMI 344
           L+     N  ++DM+ + G L DA     + I K+     W++M+
Sbjct: 423 LVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSML 467



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 134/300 (44%), Gaps = 40/300 (13%)

Query: 52  QRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Q  LP+ ++   H M   G + DS T   L+  C    A++    +H++    GF+    
Sbjct: 267 QNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVV 326

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           L   L+NM+ +   + +A+ +FD M ERNVV+WT MIS Y       +A+EL   M   G
Sbjct: 327 LGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYG 386

Query: 171 VRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
            RPN  T+ AVL AC         H G+I  G      V S++ + Y  +  + +  C  
Sbjct: 387 PRPNNITFVAVLSAC--------AHSGLIDDGRR----VFSSMKEAYGLVPGVEHNVC-- 432

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM--KRAGFAADQSTLTSVLRACTGLAL 288
                        ++  F +   +++A    K+   K  G A      TS+L AC     
Sbjct: 433 -------------MVDMFGRAGLLNDAYQFIKKFIPKEPGPA----VWTSMLGACRMHRN 475

Query: 289 LELGTQVHVHVLKYD-----HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
            +LG +V  HVL  +     H ++L+N +  +  +   +E   ++ +R   K  + +ST+
Sbjct: 476 FDLGVKVAEHVLSVEPENPGHYVMLSN-IYALAGRMDRVEMVRNMMTRRRLKKQVGYSTI 534


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/660 (37%), Positives = 365/660 (55%), Gaps = 47/660 (7%)

Query: 21  FSLTITPPVASCNTITRN-SSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAE 79
           FS    P     N + R+ S S   + T F Y       ++A++A        D  ++  
Sbjct: 77  FSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHN-----LRAINAFAL-----DRFSFPS 126

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139
           L+K      A      +H      GF  + F+   L+ M+     + +A++LFD+M   +
Sbjct: 127 LLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPD 186

Query: 140 VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHC 196
            V+W  +I  YC     D AL L   M    ++P+      VL AC    +L   R +H 
Sbjct: 187 AVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHE 246

Query: 197 GIIKVGFESDVFVRSALIDIYA-------------------------------KLGELRN 225
            +   G+  D  +++ALI++YA                               KLG +++
Sbjct: 247 FVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKD 306

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F++M  RDLV W+++I G+A++    EAL L+  M +     DQ T+ SV+ AC+ 
Sbjct: 307 ARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSH 366

Query: 286 LALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           +  L     +H +V +  +   L +NNAL+DMY KCG+L  A  VF  M +K+VISWS+M
Sbjct: 367 VGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSM 426

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           I+  A +G +  A+KLF  MK   I+PN +T +GVL+AC HAG VE+G   F SM   +G
Sbjct: 427 INAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHG 486

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           I P REHY CM+DL  RA  L++A++LI  MP+ P+ + W +L+ AC+VH   +L   AA
Sbjct: 487 ISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAA 546

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
           K++L L+P   G  ++LSNIYA  ++W++V  +RK+M  +GI+KE   S IE+N Q+H F
Sbjct: 547 KRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMF 606

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
            +AD  H Q D+I + L  ++ KL  VGY P T+ +L DLE E K++ + +HSEKLA+ +
Sbjct: 607 MMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTSGILIDLEEEDKKELVLWHSEKLAVCY 666

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GL+S      IRI KNLRIC DCH+F KL +K+    IV+RD  R+HH   G CSC DYW
Sbjct: 667 GLISRRNESCIRIVKNLRICEDCHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/593 (38%), Positives = 349/593 (58%), Gaps = 7/593 (1%)

Query: 58  AMKAMHAMQCHG-VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           A++A   M   G VR DS T A ++            + VH      G      +V  L+
Sbjct: 204 ALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLI 263

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +++ K   +E A+ LFD+M   ++V++  +IS Y    M   ++EL   ++  G+RP+  
Sbjct: 264 SLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSS 323

Query: 177 TYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T  A++          +   LH  ++K G +++  V +AL  +Y +  ++ +A   F+ M
Sbjct: 324 TLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAM 383

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           P + +  WN++I G+AQN   + A+ L+++M+      +  T++S L AC  L  L LG 
Sbjct: 384 PEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGK 443

Query: 294 QVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
            VH  +   K + ++ +  AL+DMY KCGS+ +A  +F  M  K+V+SW+ MISG   +G
Sbjct: 444 WVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHG 503

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
              EALKL++ M  + + P   T + VL+ACSH G V++G   F+SM   YGI PG EH 
Sbjct: 504 QGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHC 563

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
           +CM+DLLGRAG+L+EA +LI E P        W ALLGAC VH++ DLA  A++K+  L+
Sbjct: 564 TCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELE 623

Query: 471 PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSH 530
           P++ G Y+LLSN+Y + +++ E A VR+  ++R + K PGC+ IE+  + H F   D +H
Sbjct: 624 PENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAH 683

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           PQ D I  +L+ L  K++  GY PDT   L D+E E+KE  ++ HSEKLAI FGL++   
Sbjct: 684 PQSDAIYLYLEKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLNTEP 743

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           G  IRI KNLR+C DCH   K+ +K+  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 744 GTEIRIIKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 796



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 195/400 (48%), Gaps = 15/400 (3%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H   ++ GF  + F+ + L  ++   S   +A+ +FD +P  + V W T+++       
Sbjct: 145 LHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLS---- 200

Query: 156 NDKALELLIFMLREG-VRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRS 211
             +ALE  + M   G VRP+  T ++VL A   +    + R +H    K G      V +
Sbjct: 201 GSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVT 260

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
            LI +YAK G++  A  +F+ M   DLV +N++I G++ N  V  ++ L+K +   G   
Sbjct: 261 GLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRP 320

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVF 329
             STL +++   +      L   +H HV+K   D +  ++ AL  +YC+   ++ A   F
Sbjct: 321 SSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAF 380

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
             M +K + SW+ MISG AQNG ++ A+ LF+ M+   ++PN +TI   L AC+  G + 
Sbjct: 381 DAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALS 440

Query: 390 DG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
            G W H   +     ++      + +ID+  + G + EA  +   M  + + V+W  ++ 
Sbjct: 441 LGKWVH--KIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNK-NVVSWNVMIS 497

Query: 449 ACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
              +H     A+   K +++     P +   LS +YA S 
Sbjct: 498 GYGLHGQGAEALKLYKDMMDAHLH-PTSSTFLSVLYACSH 536



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 141/297 (47%), Gaps = 42/297 (14%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           LR LH   +  GF +D FV SAL  +Y  L    +A  VF+ +P+ D V+WN+++ G + 
Sbjct: 142 LRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLSG 201

Query: 251 NSDVDEALNLYKRMKRAG-FAADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHDL 306
           +    EAL  + RM  AG    D +TL SVL A   +A   +G  VH    K     H+ 
Sbjct: 202 S----EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEH 257

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
           ++   L+ +Y KCG +E A  +F RM   D+++++ +ISG + NG    +++LF+ +   
Sbjct: 258 VVTG-LISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGM 316

Query: 367 RIKPNYITIVGV-----------LFACSHAGFVEDG-----------------WNHFKSM 398
            ++P+  T+V +           L  C HA  V+ G                 +N   S 
Sbjct: 317 GLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSA 376

Query: 399 KKFYGIDPGR--EHYSCMIDLLGRAGKLQEAVKLIHEMP---YEPDAVTWRALLGAC 450
           ++ +   P +  E ++ MI    + G  + AV L  +M      P+ +T  + L AC
Sbjct: 377 RRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSAC 433


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/522 (42%), Positives = 330/522 (63%), Gaps = 8/522 (1%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L EA+ +FD+MP+RNVV+WT+MIS Y      D A +L   M  +    N  T++A+L+ 
Sbjct: 187 LSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDK----NEVTWTAMLKG 242

Query: 185 CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
                 + +    + K      V   + +I  +   GE+  A  VF++M  +D   W+++
Sbjct: 243 YTRSGRINEA-AELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSAL 301

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           I  + +     EAL L+  M+R G   +  ++ S+L  C  LA L+ G QVH  +++  +
Sbjct: 302 IKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHF 361

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           D D+ +++ L+ MY KCG L     VF R   KD++ W+++I+G AQ+G+ ++AL++F  
Sbjct: 362 DLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHE 421

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           M  S   P+ IT +GVL AC + G V++G   F+SMK  Y +D   EHY+CM+DLLGRAG
Sbjct: 422 MFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAG 481

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
           KL EA+ LI  MP E DA+ W ALL AC+ H+N DLA  AAKK+L L+P   G YILLSN
Sbjct: 482 KLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSN 541

Query: 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS-SHPQIDKINKHLK 541
           +YA+  +W +VAE+RKTMRAR ++K PGCSWIEV+ ++H F    S SHP+ + I K L+
Sbjct: 542 LYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLE 601

Query: 542 HLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
            L   L   GY PD ++V+ D++ E K  S+++HSEK+A+ +GL+ +  GK IR+ KNLR
Sbjct: 602 KLGASLREAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLLKVPVGKPIRVMKNLR 661

Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +CGDCH+  KL A++  + I++RD  R+HHF+DG CSC D+W
Sbjct: 662 VCGDCHSAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 195/406 (48%), Gaps = 28/406 (6%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           E  T   N L++ +VK  ++ EA+ +FD+MPERNVVSWT+M+  Y    + D+A ELL +
Sbjct: 75  ERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEA-ELLFW 133

Query: 166 MLREGVRPNMFTYSAVLRAC--DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
            + E    N+ +++ +L     D  +   +    +I V    DV   + +I      G L
Sbjct: 134 RMPE---KNVVSWTVMLGGLIEDGRVDEARRLFDMIPV---KDVVASTNMIGGLCSEGRL 187

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
             A  +F+EMP R++V W S+I G+A N+ VD A  L++ M       ++ T T++L+  
Sbjct: 188 SEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPD----KNEVTWTAMLKGY 243

Query: 284 TGLALL----ELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
           T    +    EL   + V  +   + +I+   L       G +  A  VF +M +KD  +
Sbjct: 244 TRSGRINEAAELFKAMPVKPVAACNGMIMGFGL------NGEVGKARWVFDQMKEKDDGT 297

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSM 398
           WS +I    + G+  EAL LF  M+   ++PN+ +I+ +L  C     ++ G   H + +
Sbjct: 298 WSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLV 357

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
           +  + +D      S +I +  + G L    ++      + D V W +++     H   + 
Sbjct: 358 RSHFDLDIYVS--SVLITMYIKCGDLVTGKRVFDRFSSK-DIVMWNSIIAGYAQHGFGEK 414

Query: 459 AICAAKKILNLDPQ-DPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503
           A+    ++ +     D  T+I + +    + K  E  E+ ++M+++
Sbjct: 415 ALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSK 460



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 135/307 (43%), Gaps = 56/307 (18%)

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
           F S   +    I  +A+LG++  A  +F+++ ++ +  WN+I+ G+  N    EA  L+ 
Sbjct: 12  FSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFD 71

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSL 322
           +M                                      + + I  N L+  Y K G +
Sbjct: 72  KMP-------------------------------------ERNTISWNGLVSGYVKNGMI 94

Query: 323 EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
            +A  VF +M +++V+SW++M+ G  Q G   EA  LF  M     + N ++   +L   
Sbjct: 95  SEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMP----EKNVVSWTVML--- 147

Query: 383 SHAGFVEDGWNHFKSMKKFYGIDPGREHYSC--MIDLLGRAGKLQEAVKLIHEMPYEPDA 440
              G +EDG       ++ + + P ++  +   MI  L   G+L EA ++  EMP + + 
Sbjct: 148 --GGLIEDG--RVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMP-QRNV 202

Query: 441 VTWRALLGACKVHRNTDLAICAAKKILNLDP-QDPGTYILLSNIYANSQKWDEVAEVRKT 499
           V W +++    ++   D+    A+K+  + P ++  T+  +   Y  S + +E AE+ K 
Sbjct: 203 VAWTSMISGYAMNNKVDV----ARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKA 258

Query: 500 MRARGIT 506
           M  + + 
Sbjct: 259 MPVKPVA 265



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 109/231 (47%), Gaps = 24/231 (10%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           S+L+  + R  ++ +   A+     MQ  GVR +  +   ++  C +  +++  + VH+ 
Sbjct: 299 SALIKIYERKGFELE---ALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQ 355

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           ++   F+ + ++ ++L+ M++K   L   + +FD+   +++V W ++I+ Y      +KA
Sbjct: 356 LVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKA 415

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSA------- 212
           LE+   M   G  P+  T+  VL AC         + G +K G E    ++S        
Sbjct: 416 LEVFHEMFSSGAAPDEITFIGVLSACG--------YTGKVKEGLEIFESMKSKYQVDQKT 467

Query: 213 -----LIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
                ++D+  + G+L  A  +   MP   D +VW +++     + ++D A
Sbjct: 468 EHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLA 518


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/589 (39%), Positives = 349/589 (59%), Gaps = 38/589 (6%)

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
           E K +H H+L       +  ++ + ++    S    A+++F  +    V  W T + ++ 
Sbjct: 30  ELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFA 89

Query: 152 DAKMNDKALELLIFMLRE-GVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDV 207
           +      A+ L  + LRE  + P+ +T S VL+AC  L+ +R    +H  + K+G +S++
Sbjct: 90  EGDSPADAISLF-YRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNM 148

Query: 208 FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN------------------------- 242
           F+++ ++ +YA  GE+  A  VF++MP RD++ WN                         
Sbjct: 149 FLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPER 208

Query: 243 ------SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
                 S+IGG+AQ     EA++L+  M+ AG   ++ T+ +VL AC  +  L LG ++H
Sbjct: 209 NVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIH 268

Query: 297 VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
               +  Y+ ++ + N L+DMY KCG LEDA  +F  M ++ V+SWS MI+GLA +G ++
Sbjct: 269 DFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAE 328

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414
           +AL LF  M  + +KPN +T +G+L ACSH G VE G  +F SM + YGI P  EHY CM
Sbjct: 329 DALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCM 388

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474
           +DL  RAG LQEA + I  MP  P+ V W ALLG CKVH+N  LA  A + +  LDP + 
Sbjct: 389 VDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLND 448

Query: 475 GTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQID 534
           G Y++LSNIYA + +W++VA VRK MR RG+ K PG S I V   ++ F   D +HPQ +
Sbjct: 449 GYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTE 508

Query: 535 KINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTI 594
           +I +  + L+Q++   GY P+T+ VL D+E +QKE  +  HSEKLA+VFGL+  T G  I
Sbjct: 509 EIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVI 568

Query: 595 RIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           RI KNLR+C DCH   K+ + +  + IV+RD  R+H F++G+CSCGDYW
Sbjct: 569 RIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 157/328 (47%), Gaps = 40/328 (12%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+   + ++   +  D  T + ++K C     V   K+VH +V   G +   FL N++++
Sbjct: 97  AISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVH 156

Query: 118 MH-------------------------------VKFSLLEEAQVLFDQMPERNVVSWTTM 146
           ++                               VK    E A  LF +MPERNV SWT+M
Sbjct: 157 LYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSM 216

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGF 203
           I  Y     + +A++L + M   G+ PN  T  AVL AC    +L++ R++H    + G+
Sbjct: 217 IGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGY 276

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
           E ++ V + LID+Y K G L +A  +F+ M  R +V W+++I G A +   ++AL L+ +
Sbjct: 277 EKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNK 336

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKC 319
           M   G   +  T   +L AC+ + ++E G +    + + D+ ++        ++D++ + 
Sbjct: 337 MINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTR-DYGIVPRIEHYGCMVDLFSRA 395

Query: 320 GSLEDAMSVFSRM-IQKDVISWSTMISG 346
           G L++A      M I  + + W  ++ G
Sbjct: 396 GLLQEAHEFIMNMPIAPNGVVWGALLGG 423


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/634 (37%), Positives = 369/634 (58%), Gaps = 42/634 (6%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105
           F       D   A+K    M   G+  DS T+  L+K C      +E + +H HVL  GF
Sbjct: 61  FRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGF 120

Query: 106 EPETFLVNILLNMH-------------------------------VKFSLLEEAQVLFDQ 134
           + + ++   L++M+                               V    +E AQ LFD+
Sbjct: 121 DLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDE 180

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLI-FMLREGVRPNMFTYSAVLRAC---DSLII 190
           +P ++VVSW  MIS Y +     +ALEL    M+   VRP+  T   V+ AC   DS+ +
Sbjct: 181 IPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIEL 240

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
            R +H  I   GF S++ + +ALID+Y+K GE+  A  +F+ +  +D++ WN++IGG+  
Sbjct: 241 GRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTH 300

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN- 309
            +   EAL L++ M R+G   +  T+ S+L AC  L  +++G  +HV++ K    ++ N 
Sbjct: 301 MNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNV 360

Query: 310 ----NALLDMYCKCGSLEDAMSVF-SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
                +L+DMY KCG ++ A  VF S M  + + +W+ MISG A +G +  A  +F  M+
Sbjct: 361 SSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMR 420

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
           ++ I+P+ IT VG+L ACSH+G ++ G N F+SM + Y I P  EHY CMIDLLG +G  
Sbjct: 421 MNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLF 480

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484
           +EA ++I+ MP EPD V W +LL ACK+H N +L    AKK++ ++P + G+Y+LLSNIY
Sbjct: 481 KEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIY 540

Query: 485 ANSQKWDEVAEVRKTMRARGITKE-PGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           A + +W+EVA++R  +  +G+ K+ PGCS IE++  +H F + D  HPQ  +I   L+ +
Sbjct: 541 AAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEM 600

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
              L   G+ PDT+ VLQ++E E +E ++++HSEKLAI FGL+S   G  + I KNLR+C
Sbjct: 601 EVLLEEAGFVPDTSEVLQEMEEEWREGALRHHSEKLAIAFGLISTKPGTKLTIMKNLRVC 660

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNC 637
            +CH   KL +K+  + I+ RD  R+ HF+DG C
Sbjct: 661 KNCHEATKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/462 (27%), Positives = 221/462 (47%), Gaps = 50/462 (10%)

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHV---KFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
           + +H  ++  G     + ++ LL   V    F     A  +FD + E N++ W TM   +
Sbjct: 5   RXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGH 64

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDV 207
             +     AL+L + M+  G+ P+ +T+  +L++C    I +   Q+H  ++K+GF+ D+
Sbjct: 65  ALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDI 124

Query: 208 FVRSALIDIYAKLGELRNAECV-------------------------------FNEMPTR 236
           +V ++LI +YA+ G L +A  V                               F+E+P +
Sbjct: 125 YVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGK 184

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKR-MKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
           D+V WN++I G+ +  +  EAL L+K  M       D+ST+ +V+ AC     +ELG   
Sbjct: 185 DVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGR-- 242

Query: 296 HVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           HVH    DH    N    NAL+D+Y K G +E A  +F  +  KDVISW+T+I G     
Sbjct: 243 HVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMN 302

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREH 410
             +EAL LF+ M  S   PN +T++ +L AC+H G ++ G W H    KK  G+      
Sbjct: 303 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSS 362

Query: 411 Y-SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA--ICAAKKIL 467
             + +ID+  + G +  A ++           TW A++    +H   + A  I +  ++ 
Sbjct: 363 LQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMN 422

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEP 509
            ++P D  T++ L +  ++S   D    + ++M  RG    P
Sbjct: 423 GIEPDDI-TFVGLLSACSHSGMLDLGRNIFRSM-TRGYEITP 462



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 143/296 (48%), Gaps = 39/296 (13%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALID---IYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           +R +H  +IK G  +  +  S L++   +         A  VF+ +   +L++WN++  G
Sbjct: 4   VRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRG 63

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHD 305
            A +SD   AL LY  M   G   D  T   +L++C    + + G Q+H HVLK  +D D
Sbjct: 64  HALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLD 123

Query: 306 LILNNALLDMYCKCGSLEDAMSV-------------------------------FSRMIQ 334
           + ++ +L+ MY + G LEDA  V                               F  +  
Sbjct: 124 IYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPG 183

Query: 335 KDVISWSTMISGLAQNGYSQEALKLF-ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393
           KDV+SW+ MISG  + G  +EAL+LF E M ++ ++P+  T+V V+ AC+ +  +E G  
Sbjct: 184 KDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELG-R 242

Query: 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           H  S    +G     +  + +IDL  + G+++ A +L   + +  D ++W  L+G 
Sbjct: 243 HVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGL-WNKDVISWNTLIGG 297


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/627 (35%), Positives = 358/627 (57%), Gaps = 52/627 (8%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G R D++T   ++  C +       K +H   ++       F+ N L++M+ K  +++EA
Sbjct: 224 GCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEA 283

Query: 129 QVLFDQMPERNVVSWTTMISAYC------DA-----KMNDKALELLIF------------ 165
             +F  M  ++VVSW  M++ Y       DA     KM ++ +++ +             
Sbjct: 284 NTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQR 343

Query: 166 ------------MLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKV-------GF 203
                       ML  G++PN  T  +VL  C S+  L   +++HC  IK        G 
Sbjct: 344 GLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGH 403

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPT--RDLVVWNSIIGGFAQNSDVDEALNLY 261
             +  V + LID+YAK  ++  A  +F+ +    RD+V W  +IGG++Q+ D ++AL L 
Sbjct: 404 GDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELL 463

Query: 262 KRM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD---LILNNALLDMY 316
             M  +      +  T++  L AC  LA L +G Q+H + L+   +   L ++N L+DMY
Sbjct: 464 SEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMY 523

Query: 317 CKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIV 376
            KCGS+ DA  VF  M+ K+ ++W+++++G   +GY +EAL +F+ M+    K + +T++
Sbjct: 524 AKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLL 583

Query: 377 GVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY 436
            VL+ACSH+G ++ G  +F  MK  +G+ PG EHY+C++DLLGRAG+L  A++LI EMP 
Sbjct: 584 VVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPM 643

Query: 437 EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEV 496
           EP  V W A L  C++H   +L   AA+KI  L     G+Y LLSN+YAN+ +W +V  +
Sbjct: 644 EPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRI 703

Query: 497 RKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDT 556
           R  MR +G+ K PGCSW+E  K    F V D +HP   +I + L   +Q++  +GY P+T
Sbjct: 704 RSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPET 763

Query: 557 NYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKM 616
            + L D++ E+K+D +  HSEKLA+ +G+++  QG  IRI KNLR+CGDCHT     +++
Sbjct: 764 GFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRI 823

Query: 617 ENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +  I++RD  R+HHF++G+CSC  YW
Sbjct: 824 IDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 208/434 (47%), Gaps = 55/434 (12%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D+ T+  + K C    +V   +  H   L  GF    F+ N L+ M+ +   L +A+ +F
Sbjct: 126 DNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVF 185

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNMFTYSAVLRACDSL--- 188
           D+M   +VVSW ++I +Y        ALE+   M  E G RP+  T   VL  C SL   
Sbjct: 186 DEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTH 245

Query: 189 IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
            + +QLHC  +      ++FV + L+D+YAK G +  A  VF+ M  +D+V WN+++ G+
Sbjct: 246 SLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGY 305

Query: 249 AQNSDVDEALNLYKRMKR-----------------------------------AGFAADQ 273
           +Q    ++A+ L+++M+                                    +G   ++
Sbjct: 306 SQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNE 365

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN---------NALLDMYCKCGSLED 324
            TL SVL  C  +  L  G ++H + +KY  DL  N         N L+DMY KC  ++ 
Sbjct: 366 VTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDT 425

Query: 325 AMSVFSRMI--QKDVISWSTMISGLAQNGYSQEALKLFESM--KVSRIKPNYITIVGVLF 380
           A ++F  +   ++DV++W+ MI G +Q+G + +AL+L   M  +  + +PN  TI   L 
Sbjct: 426 ARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALV 485

Query: 381 ACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD 439
           AC+    +  G   H  +++      P     +C+ID+  + G + +A +L+ +     +
Sbjct: 486 ACASLAALRIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCGSISDA-RLVFDNMMAKN 543

Query: 440 AVTWRALLGACKVH 453
            VTW +L+    +H
Sbjct: 544 EVTWTSLMTGYGMH 557



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 125/435 (28%), Positives = 205/435 (47%), Gaps = 55/435 (12%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP--ERNVVSWTTMI 147
           + + KL+H  +LS G      L + L++ ++    L  A  L  + P  +  V  W ++I
Sbjct: 41  ISQVKLIHQKLLSFGILTLN-LTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLI 99

Query: 148 SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFE 204
            +Y D    +K L L   M      P+ +T+  V +AC  +  +R     H   +  GF 
Sbjct: 100 RSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFI 159

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
           S+VFV +AL+ +Y++   L +A  VF+EM   D+V WNSII  +A+      AL ++ RM
Sbjct: 160 SNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRM 219

Query: 265 KRA-GFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGS 321
               G   D  TL +VL  C  L    LG Q+H   +  +   ++ + N L+DMY KCG 
Sbjct: 220 TNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGM 279

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK----------------- 364
           +++A +VFS M  KDV+SW+ M++G +Q G  ++A++LFE M+                 
Sbjct: 280 MDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISG 339

Query: 365 ------------------VSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGID 405
                              S IKPN +T++ VL  C+  G +  G   H  ++K  Y ID
Sbjct: 340 YAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIK--YPID 397

Query: 406 PGREHY-------SCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLGACKVHRNTD 457
             +  +       + +ID+  +  K+  A  +   + P E D VTW  ++G    H + +
Sbjct: 398 LRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDAN 457

Query: 458 LAICAAKKILNLDPQ 472
            A+    ++   D Q
Sbjct: 458 KALELLSEMFEEDCQ 472



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 143/302 (47%), Gaps = 21/302 (6%)

Query: 171 VRPNMFTYSA------VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           ++ ++F+ SA       +  C ++  ++ +H  ++  G  + + + S LI  Y  +G L 
Sbjct: 18  IKVSLFSTSAPEITPPFIHKCKTISQVKLIHQKLLSFGILT-LNLTSHLISTYISVGCLS 76

Query: 225 NAECVFNEMPTRDLVV--WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           +A  +    P  D  V  WNS+I  +  N   ++ L L+  M    +  D  T   V +A
Sbjct: 77  HAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKA 136

Query: 283 CTGLALLELGTQVHVH--VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           C  ++ +  G   H    V  +  ++ + NAL+ MY +C SL DA  VF  M   DV+SW
Sbjct: 137 CGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSW 196

Query: 341 STMISGLAQNGYSQEALKLFESMKVS-RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           +++I   A+ G  + AL++F  M      +P+ IT+V VL  C+  G    G    K + 
Sbjct: 197 NSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLG----KQLH 252

Query: 400 KFYGIDPGREHY---SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL-GACKVHRN 455
            F       ++    +C++D+  + G + EA  +   M  + D V+W A++ G  ++ R 
Sbjct: 253 CFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVK-DVVSWNAMVAGYSQIGRF 311

Query: 456 TD 457
            D
Sbjct: 312 ED 313


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/554 (37%), Positives = 347/554 (62%), Gaps = 6/554 (1%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           VH H++  G      L+  L+++      +  A+ LF  +P  +   + +++        
Sbjct: 46  VHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGF 105

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSA 212
           +   +     ML  G   + +T+++V++AC  L  LR   ++H  ++  G+ SD++V++A
Sbjct: 106 SIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAA 165

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           LI +YAK  +++ A+ VF+ MP R ++ WNS+I G+ QN    E++ L+  M  +GF  D
Sbjct: 166 LIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPD 225

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFS 330
            +T+ S+L +C+ L  L+ G  +H +     +D +++L  +L++MY +CG++  A  VF 
Sbjct: 226 SATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFD 285

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            M +++V++W+ MISG   +GY ++A++LF  M+    +PN IT V VL AC+H+G ++D
Sbjct: 286 SMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDD 345

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE-MPYEPDAVTWRALLGA 449
           G   F SMK+ YG+ PG EH  CM+D+ GRAG L +A + I + +P EP    W ++LGA
Sbjct: 346 GRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGA 405

Query: 450 CKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEP 509
           C++HRN DL +  A+ +L+++P++PG Y++LSNIYA + + D V  VR  M  R + K+ 
Sbjct: 406 CRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQV 465

Query: 510 GCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKE 569
           G S IE+N++ + F++ D SHPQ + I ++L  L+ +    GY P    ++ DLE E+++
Sbjct: 466 GYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERD 525

Query: 570 DSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRY 629
            +++YHSEKLA+ FGL+   QG+TIRI KNLRIC DCH+  K  + + ++ I++RD  R+
Sbjct: 526 YALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRF 585

Query: 630 HHFQDGNCSCGDYW 643
           HHF+DG+CSC DYW
Sbjct: 586 HHFKDGSCSCLDYW 599



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 147/287 (51%), Gaps = 10/287 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G    + T+  +IK C    A+   K +H+HV+  G+  + ++   L+ ++ K S ++ A
Sbjct: 120 GAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVA 179

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +FD MP+R +++W ++IS Y    +  +++ L   M+  G +P+  T  ++L +C  L
Sbjct: 180 KKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQL 239

Query: 189 IILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             L     LH      GF+ +V + ++LI++Y + G +  A  VF+ M  R++V W ++I
Sbjct: 240 GALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMI 299

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD 305
            G+  +    +A+ L+  M+  G   +  T  +VL AC    L++ G +V    +K  + 
Sbjct: 300 SGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRV-FSSMKEAYG 358

Query: 306 LIL----NNALLDMYCKCGSLEDAMSVFSRMIQKD--VISWSTMISG 346
           L+     N  ++DM+ + G L DA     + I K+     W++M+  
Sbjct: 359 LVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGA 405



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 134/300 (44%), Gaps = 40/300 (13%)

Query: 52  QRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Q  LP+ ++   H M   G + DS T   L+  C    A++    +H++    GF+    
Sbjct: 203 QNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVV 262

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           L   L+NM+ +   + +A+ +FD M ERNVV+WT MIS Y       +A+EL   M   G
Sbjct: 263 LGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYG 322

Query: 171 VRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
            RPN  T+ AVL AC         H G+I  G      V S++ + Y  +  + +  C  
Sbjct: 323 PRPNNITFVAVLSAC--------AHSGLIDDGRR----VFSSMKEAYGLVPGVEHNVC-- 368

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM--KRAGFAADQSTLTSVLRACTGLAL 288
                        ++  F +   +++A    K+   K  G A      TS+L AC     
Sbjct: 369 -------------MVDMFGRAGLLNDAYQFIKKFIPKEPGPA----VWTSMLGACRMHRN 411

Query: 289 LELGTQVHVHVLKYD-----HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
            +LG +V  HVL  +     H ++L+N +  +  +   +E   ++ +R   K  + +ST+
Sbjct: 412 FDLGVKVAEHVLSVEPENPGHYVMLSN-IYALAGRMDRVEMVRNMMTRRRLKKQVGYSTI 470


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/485 (44%), Positives = 311/485 (64%), Gaps = 7/485 (1%)

Query: 166 MLREGVRPNMFTYSAVLRAC--DSLIIL-RQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           ML + V PN FTY  ++RAC  D  I   +Q+H  ++K GF +D F  + LI +Y     
Sbjct: 85  MLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQS 144

Query: 223 LRNAECVFNEMPTRDL--VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           L  A  VF+ MP RD   V WN++I  + Q++ + EA  L+ RM+      D+    S+L
Sbjct: 145 LEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASML 204

Query: 281 RACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
            ACTGL  LE G  +H ++ K   + D  L   ++DMYCKCG LE A  VF+ + QK + 
Sbjct: 205 SACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGIS 264

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
           SW+ MI GLA +G  + A++LF+ M+   + P+ IT V VL AC+H+G VE+G ++F+ M
Sbjct: 265 SWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYM 324

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
            +  G+ PG EH+ CM+DLLGRAG L+EA KLI+EMP  PDA    AL+GAC++H NT+L
Sbjct: 325 TEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTEL 384

Query: 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNK 518
                KK++ L+P + G Y+LL+N+YA++ +W++VA+VRK M  RG+ K PG S IE   
Sbjct: 385 GEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESES 444

Query: 519 QIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEK 578
            +  F     +HPQ  +I   L  +++ +  +GY PDT+ VL D++ E+KE+ + YHSEK
Sbjct: 445 GVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEK 504

Query: 579 LAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCS 638
           LAI FGL+    G+T+RI KNLRIC DCH  +KL +K+ ++ I+IRD  R+HHF+ G CS
Sbjct: 505 LAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCS 564

Query: 639 CGDYW 643
           C DYW
Sbjct: 565 CKDYW 569



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 176/366 (48%), Gaps = 38/366 (10%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V  +  TY  LI+ C   +A+EE K +H HVL  GF  + F +N L++M+V F  LE+A+
Sbjct: 90  VSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQAR 149

Query: 130 VLFDQMPE--RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
            +FD MP+  RN VSW  MI+AY  +    +A  L   M  E V  + F  +++L AC  
Sbjct: 150 RVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTG 209

Query: 188 LIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L  L Q   +H  I K G E D  + + +ID+Y K G L  A  VFNE+P + +  WN +
Sbjct: 210 LGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCM 269

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
           IGG A +   + A+ L+K M+R   A D  T  +VL AC    L+E G     H  +Y  
Sbjct: 270 IGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGK----HYFQYMT 325

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           +++              L+  M  F             M+  L + G  +EA KL   M 
Sbjct: 326 EVL-------------GLKPGMEHF-----------GCMVDLLGRAGLLEEARKLINEMP 361

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
           V+   P+   +  ++ AC   G  E G    K + +    + GR  Y  + +L   AG+ 
Sbjct: 362 VN---PDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGR--YVLLANLYASAGRW 416

Query: 425 QEAVKL 430
           ++  K+
Sbjct: 417 EDVAKV 422



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 21/223 (9%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RNS S       +     L  A      M+   V  D    A ++  C    A+E+ K +
Sbjct: 160 RNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWI 219

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H ++   G E ++ L   +++M+ K   LE+A  +F+++P++ + SW  MI         
Sbjct: 220 HGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKG 279

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIK------------VGFE 204
           + A+EL   M RE V P+  T+  VL AC         H G+++            +G +
Sbjct: 280 EAAIELFKEMEREMVAPDGITFVNVLSAC--------AHSGLVEEGKHYFQYMTEVLGLK 331

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIG 246
             +     ++D+  + G L  A  + NEMP   D  V  +++G
Sbjct: 332 PGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVG 374


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/617 (37%), Positives = 342/617 (55%), Gaps = 7/617 (1%)

Query: 34  TITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEA 93
           T  RN  S     +          A+     M+  GV  +  T+    K   +       
Sbjct: 18  TPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTG 77

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
           K +H   +  G   + F+     +M+ K  L ++A+ LFD++PERN+ +W   IS     
Sbjct: 78  KQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTD 137

Query: 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVR 210
               +A+E  I   R    PN  T+ A L AC   + L    QLH  +++ GF++DV V 
Sbjct: 138 GRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVC 197

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
           + LID Y K  ++R++E +F EM T++ V W S++  + QN + ++A  LY R ++    
Sbjct: 198 NGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVE 257

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSV 328
                ++SVL AC G+A LELG  +H H +K   +  + + +AL+DMY KCG +ED+   
Sbjct: 258 TSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQA 317

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM--KVSRIKPNYITIVGVLFACSHAG 386
           F  M +K++++ +++I G A  G    AL LFE M  +     PNY+T V +L ACS AG
Sbjct: 318 FDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAG 377

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            VE+G   F SM+  YGI+PG EHYSC++D+LGRAG ++ A + I +MP +P    W AL
Sbjct: 378 AVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGAL 437

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
             AC++H    L + AA+ +  LDP+D G ++LLSN +A + +W E   VR+ ++  GI 
Sbjct: 438 QNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIK 497

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           K  G SWI V  Q+HAF   D SH    +I   L  L  ++   GY PD    L DLE E
Sbjct: 498 KGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEE 557

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
           +K   + +HSEKLA+ FGL+SL     IRI KNLRICGDCH+F K  +    + I++RD 
Sbjct: 558 EKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDN 617

Query: 627 IRYHHFQDGNCSCGDYW 643
            R+H F+DG CSC DYW
Sbjct: 618 NRFHRFKDGICSCKDYW 634



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 173/355 (48%), Gaps = 21/355 (5%)

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K    E A+++    P RNVVSWT++IS          AL     M REGV PN FT
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 178 YSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +    +A  SL   +  +Q+H   +K G   DVFV  +  D+Y K     +A  +F+E+P
Sbjct: 61  FPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 120

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            R+L  WN+ I     +    EA+  +   +R     +  T  + L AC+    L LG Q
Sbjct: 121 ERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQ 180

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  VL+  +D D+ + N L+D Y KC  +  +  +F+ M  K+ +SW ++++   QN  
Sbjct: 181 LHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHE 240

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKK------FYGID 405
            ++A  L+   +   ++ +   I  VL AC+    +E G + H  ++K       F G  
Sbjct: 241 DEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVG-- 298

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
                 S ++D+ G+ G ++++ +   EMP E + VT  +L+G        D+A+
Sbjct: 299 ------SALVDMYGKCGCIEDSEQAFDEMP-EKNLVTRNSLIGGYAHQGQVDMAL 346


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/617 (37%), Positives = 342/617 (55%), Gaps = 7/617 (1%)

Query: 34  TITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEA 93
           T  RN  S     +          A+     M+  GV  +  T+    K   +       
Sbjct: 68  TPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTG 127

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
           K +H   +  G   + F+     +M+ K  L ++A+ LFD++PERN+ +W   IS     
Sbjct: 128 KQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTD 187

Query: 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVR 210
               +A+E  I   R    PN  T+ A L AC   + L    QLH  +++ GF++DV V 
Sbjct: 188 GRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVC 247

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
           + LID Y K  ++R++E +F EM T++ V W S++  + QN + ++A  LY R ++    
Sbjct: 248 NGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVE 307

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSV 328
                ++SVL AC G+A LELG  +H H +K   +  + + +AL+DMY KCG +ED+   
Sbjct: 308 TSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQA 367

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM--KVSRIKPNYITIVGVLFACSHAG 386
           F  M +K++++ +++I G A  G    AL LFE M  +     PNY+T V +L ACS AG
Sbjct: 368 FDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAG 427

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            VE+G   F SM+  YGI+PG EHYSC++D+LGRAG ++ A + I +MP +P    W AL
Sbjct: 428 AVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGAL 487

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
             AC++H    L + AA+ +  LDP+D G ++LLSN +A + +W E   VR+ ++  GI 
Sbjct: 488 QNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIK 547

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           K  G SWI V  Q+HAF   D SH    +I   L  L  ++   GY PD    L DLE E
Sbjct: 548 KGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEE 607

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
           +K   + +HSEKLA+ FGL+SL     IRI KNLRICGDCH+F K  +    + I++RD 
Sbjct: 608 EKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDN 667

Query: 627 IRYHHFQDGNCSCGDYW 643
            R+H F+DG CSC DYW
Sbjct: 668 NRFHRFKDGICSCKDYW 684



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/394 (28%), Positives = 193/394 (48%), Gaps = 22/394 (5%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSG-GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
           L+K  ++  ++   ++VH  ++      P  FL N L+NM+ K    E A+++    P R
Sbjct: 12  LLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPAR 71

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLH 195
           NVVSWT++IS          AL     M REGV PN FT+    +A  SL   +  +Q+H
Sbjct: 72  NVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIH 131

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
              +K G   DVFV  +  D+Y K     +A  +F+E+P R+L  WN+ I     +    
Sbjct: 132 ALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPR 191

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
           EA+  +   +R     +  T  + L AC+    L LG Q+H  VL+  +D D+ + N L+
Sbjct: 192 EAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLI 251

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           D Y KC  +  +  +F+ M  K+ +SW ++++   QN   ++A  L+   +   ++ +  
Sbjct: 252 DFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDF 311

Query: 374 TIVGVLFACSHAGFVEDGWN-HFKSMKK------FYGIDPGREHYSCMIDLLGRAGKLQE 426
            I  VL AC+    +E G + H  ++K       F G        S ++D+ G+ G +++
Sbjct: 312 MISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVG--------SALVDMYGKCGCIED 363

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           + +   EMP E + VT  +L+G        D+A+
Sbjct: 364 SEQAFDEMP-EKNLVTRNSLIGGYAHQGQVDMAL 396


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/603 (39%), Positives = 349/603 (57%), Gaps = 11/603 (1%)

Query: 51  YQRD-LPR-AMKAMHAMQCH--GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           Y R+ LP  AM+A+  MQ    G R DSVT   ++  C    A+   + VH   L  G +
Sbjct: 92  YARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLD 151

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
               +   +L+ + K   +E A+ +FD MP RN VSW  MI  Y D     +A+ L   M
Sbjct: 152 ELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRM 211

Query: 167 LREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
           ++EGV     +  A L+AC  L  L   R++H  +++VG  S+V V +ALI  YAK    
Sbjct: 212 VQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRA 271

Query: 224 RNAECVFNEMPTRDL-VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
             A  VFNE+  +   + WN++I GF QN   ++A  L+ RM+      D  TL SV+ A
Sbjct: 272 DLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPA 331

Query: 283 CTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
              ++       +H + +++  D D+ +  AL+DMY KCG +  A  +F     + VI+W
Sbjct: 332 VADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITW 391

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           + MI G   +G+ Q A++LFE MK +   PN  T + VL ACSHAG V++G  +F SMKK
Sbjct: 392 NAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKK 451

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            YG++PG EHY  M+DLLGRAGKL EA   I  MP EP    + A+LGACK+H+N +LA 
Sbjct: 452 DYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAE 511

Query: 461 CAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQI 520
            +A+ I  L P++   ++LL+NIYAN+  W +VA VR  M  +G+ K PG S I++  ++
Sbjct: 512 ESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEV 571

Query: 521 HAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLA 580
           H F    ++H     I   L  LI+++  +GY PDT+ +  D+E + K   +  HSEKLA
Sbjct: 572 HTFYSGSTNHQHAKDIYARLAKLIEEIKDMGYVPDTDSI-HDVEDDVKAQLLNTHSEKLA 630

Query: 581 IVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
           I +GL+    G TI+I+KNLR+C DCH   KL + +  + I++RD  R+HHF+DG CSCG
Sbjct: 631 IAYGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCG 690

Query: 641 DYW 643
           DYW
Sbjct: 691 DYW 693



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 202/387 (52%), Gaps = 12/387 (3%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           T+  L+K C AR  +   + VH  + + G   E+     L NM+ K     +A+ +FD+M
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLRE--GVRPNMFTYSAVLRAC---DSLII 190
           P R+ V+W  +++ Y    +   A+E ++ M  E  G RP+  T  +VL AC    +L  
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
            R++H   ++ G +  V V +A++D Y K G +  A  VF+ MP R+ V WN++I G+A 
Sbjct: 138 CREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYAD 197

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
           N +  EA+ L+ RM + G     +++ + L+AC  L  L+   +VH  +++     ++ +
Sbjct: 198 NGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSV 257

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDV-ISWSTMISGLAQNGYSQEALKLFESMKVSR 367
            NAL+  Y KC   + A  VF+ +  K   ISW+ MI G  QN   ++A +LF  M++  
Sbjct: 258 TNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLEN 317

Query: 368 IKPNYITIVGVLFACSH-AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
           ++P+  T+V V+ A +  +  ++  W H  S++  + +D      + +ID+  + G++  
Sbjct: 318 VRPDSFTLVSVIPAVADISDPLQARWIHGYSIR--HQLDQDVYVLTALIDMYSKCGRVSI 375

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVH 453
           A +L  +   +   +TW A++     H
Sbjct: 376 ARRLF-DSARDRHVITWNAMIHGYGSH 401


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/525 (41%), Positives = 332/525 (63%), Gaps = 6/525 (1%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           ++ A  LFDQ+P+ ++V + TM   Y       +A  L   +L  G+ P+ +T+ ++L+A
Sbjct: 71  MQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKA 130

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C S   L   RQLHC  IK+G   +V+V   LI++Y    E+  A  VF+++    +V +
Sbjct: 131 CASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTY 190

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N++I G+A+ S  +EAL+L++ ++         T+ SVL +C  L  L+LG  +H +V K
Sbjct: 191 NAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKK 250

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
             ++  + ++ AL+DMY KCGSL+DA+ VF  M  +D  +WS MI   A +G+  +A+ L
Sbjct: 251 NGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSL 310

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F+ M+ +  +P+ IT +G+L+ACSH G VE+G+ +F  M+  YG+ PG +HY CM+DLLG
Sbjct: 311 FKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLG 370

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           RAG+L+EA + I  +P  P  + WR LL AC  H N +L     ++I  LD    G YI+
Sbjct: 371 RAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYII 430

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LSN+ A + +W++V  VRK M  RG+ K PGCS +EVN  +H F   D  H    K+++ 
Sbjct: 431 LSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQA 490

Query: 540 LKHLIQKLVGVGYAPDTNYVLQ-DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRK 598
           L  L+++L  VGY P+T+ V   D+E E+KE +++YHSEKLAI FGL++   G TIR+ K
Sbjct: 491 LDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPPGTTIRVVK 550

Query: 599 NLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           NLR+CGDCH+ AKL + + ++ I++RD  R+HHF+DG CSC DYW
Sbjct: 551 NLRVCGDCHSAAKLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 166/331 (50%), Gaps = 10/331 (3%)

Query: 42  LLDDFTRFCYQRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHV 100
           L +   R   + D P RA      +   G+  D  T+  L+K C +  A+EE + +H   
Sbjct: 88  LFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLA 147

Query: 101 LSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKAL 160
           +  G     ++   L+NM+   + ++ A+ +FD++ E  VV++  MI+ Y      ++AL
Sbjct: 148 IKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEAL 207

Query: 161 ELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIY 217
            L   +    ++P   T  +VL +C    +L + + +H  + K GF   V V +ALID+Y
Sbjct: 208 SLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMY 267

Query: 218 AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT 277
           AK G L +A CVF  M  RD   W+++I  +A +    +A++L+K M++AG   D+ T  
Sbjct: 268 AKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFL 327

Query: 278 SVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMS-VFSRM 332
            +L AC+   L+E G + + + ++  + +I        ++D+  + G LE+A   +    
Sbjct: 328 GLLYACSHTGLVEEGFE-YFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLP 386

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESM 363
           I+   I W T++S    +G  +   ++ E +
Sbjct: 387 IRPTPILWRTLLSACGSHGNVELGKRVIEQI 417



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 156/319 (48%), Gaps = 18/319 (5%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALID---IYAKLGELRNAECVFNEMPTR 236
           ++L  C SL  L+QL    IK    SD+ V +  I+   +      +++A  +F+++P  
Sbjct: 25  SLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQP 84

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           D+V++N++  G+A+      A  L+ ++  +G   D  T  S+L+AC     LE G Q+H
Sbjct: 85  DIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLH 144

Query: 297 VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
              +K     ++ +   L++MY  C  ++ A  VF ++ +  V++++ MI+G A+     
Sbjct: 145 CLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPN 204

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNH----FKSMKKFYGIDPGRE 409
           EAL LF  ++   +KP  +T++ VL +C+  G ++ G W H         +F  +D    
Sbjct: 205 EALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVD---- 260

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
             + +ID+  + G L +AV +   M    D   W A++ A  +H +   A+   K++   
Sbjct: 261 --TALIDMYAKCGSLDDAVCVFENMAVR-DTQAWSAMIMAYAIHGHGLKAVSLFKEMRKA 317

Query: 470 DPQDPGTYILLSNIYANSQ 488
              +P     L  +YA S 
Sbjct: 318 G-TEPDEITFLGLLYACSH 335



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 98/230 (42%), Gaps = 25/230 (10%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     +Q   ++   VT   ++  C    A++  K +H +V   GF     +   L++
Sbjct: 206 ALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALID 265

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L++A  +F+ M  R+  +W+ MI AY       KA+ L   M + G  P+  T
Sbjct: 266 MYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEIT 325

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVR------------SALIDIYAKLGELRN 225
           +  +L AC         H G+++ GFE    +R              ++D+  + G L  
Sbjct: 326 FLGLLYACS--------HTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEE 377

Query: 226 AECVFNEMPTRDL-VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           A      +P R   ++W +++     + +V+    L KR+    F  D S
Sbjct: 378 AYEFIVGLPIRPTPILWRTLLSACGSHGNVE----LGKRVIEQIFELDDS 423


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/586 (39%), Positives = 347/586 (59%), Gaps = 8/586 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  GV  ++ TY  ++K C +       ++VH  V+  GF  + F+   L++M+ K   
Sbjct: 123 MQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGE 182

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           + +A  +FD+M  R+VV WT MI+ Y  A+   KAL L   M  EG   +  T  +V  A
Sbjct: 183 IGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASA 242

Query: 185 CDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
              L   R    +H   +  GF  DV V ++++ +YAK G +  A  VF+ M  R+ + W
Sbjct: 243 VGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISW 302

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL- 300
           NS++ G+ QN    +AL+L+ +M+ +    +  T   ++ AC+ L    LG ++H  V+ 
Sbjct: 303 NSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVIS 362

Query: 301 -KYDHDLILNNALLDMYCKCGSLEDAMSVFS--RMIQKDVISWSTMISGLAQNGYSQEAL 357
            K D D  L NA++DMY KCG L+ A+ +F+   + ++DV SW+ +ISG   +G+ +EAL
Sbjct: 363 SKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEAL 422

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
           +LF  M+V  ++PN IT   +L ACSHAG +++G   F  M K   + P  +HY+CM+D+
Sbjct: 423 ELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-SVRPEMKHYACMVDM 481

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           LGRAG L EA +LI ++P  P    W ALL AC++H NT+L   AA  +  L+P+  G Y
Sbjct: 482 LGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYY 541

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           +L+SNIYA S KW EV  VR+ M++RG+ K    S IE   ++H F+ AD S P   ++ 
Sbjct: 542 VLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVY 601

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
           + ++ L  ++  VGY PD + VL D+E E KE  + YHSEKLA+ FG+M + QG  I++ 
Sbjct: 602 RKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVT 661

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLR+C DCH   K  + +  + I++RD  R+HHFQ G CSCGDYW
Sbjct: 662 KNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 707



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 132/420 (31%), Positives = 220/420 (52%), Gaps = 33/420 (7%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPET--FLVNILLNMHVKFSLLEEAQVLFD- 133
           Y  L++CC +   +   KL+H+ + + GF   T  FL  +++ ++ K   L  A+ LFD 
Sbjct: 28  YDHLLQCCTS---LTTLKLIHSSLSTRGFLLHTPHFLARLII-LYSKLGDLHSARTLFDH 83

Query: 134 ---------QMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
                    Q P  N     TM+ AY +A  + +A++L I+M R GV  N FTY  VL+ 
Sbjct: 84  RHHHHHGHTQAP--NSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKV 141

Query: 185 CDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C S    +    +H  +++ GF SD+FV +AL+D+YAK GE+ +A  VF+ M  RD+V W
Sbjct: 142 CASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCW 201

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL- 300
            ++I  + Q     +AL L+++M+  GF  D+ T  SV  A   L    +   VH + + 
Sbjct: 202 TAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVL 261

Query: 301 -KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
             +  D+ + N+++ MY KCG++E A  VF RM +++ ISW++M+SG  QNG   +AL L
Sbjct: 262 NGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSL 321

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY---GIDPGREHYSCMID 416
           F  M+ S   PN +T + ++ ACS+ G    G    + +  F     +D      + ++D
Sbjct: 322 FNQMQASECDPNPVTALIMVSACSYLGSKHLG----RKLHNFVISSKMDIDTTLRNAIMD 377

Query: 417 LLGRAGKLQEAVKLIHEMPY-EPDAVTWRALLGACKVHRNTD--LAICAAKKILNLDPQD 473
           +  + G L  AV++ +     E D  +W  L+    VH +    L + +  ++  ++P D
Sbjct: 378 MYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPND 437


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/592 (35%), Positives = 355/592 (59%), Gaps = 6/592 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++    M   G   DS T   ++  C   H +   ++VH + +  GF  +T L N+LL
Sbjct: 280 KAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLL 339

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+   S       +F  M ++NVVSWT MI++Y  A + DK   L   M  EG RP++F
Sbjct: 340 DMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIF 399

Query: 177 TYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
             ++ L A     +L+    +H   I+ G E  + V +AL+++Y K G +  A+ +F+ +
Sbjct: 400 AITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGV 459

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
            ++D++ WN++IGG+++N+  +EA +L+  M       +  T+T +L A   L+ LE G 
Sbjct: 460 VSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGR 518

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           ++H + L+  Y  D  + NAL+DMY KCG+L  A  +F R+  K++ISW+ M++G   +G
Sbjct: 519 EMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHG 578

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
             ++A+ LFE M+VS I P+  +   +L+ACSH+G  ++GW  F +M+K + I+P  +HY
Sbjct: 579 RGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHY 638

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +CM+DLL   G L+EA + I  MP EPD+  W +LL  C++HRN  LA   A+++  L+P
Sbjct: 639 TCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEP 698

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
           ++ G Y+LL+NIYA +++W+ V +++  +  RG+ +  GCSWIE   ++H F   + +HP
Sbjct: 699 ENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHP 758

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
           Q  +I + L  + +++   G+ P   Y L   +     +++  HS KLA+ FG+++L++G
Sbjct: 759 QGTRIAEFLNEVAKRMQEEGHDPKKKYALMGADNAVHGEALCGHSSKLAVAFGVLNLSEG 818

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + IR+ KN R+C  CH  AK  +KM ++ I++RD  R+HHF+ G CSC  YW
Sbjct: 819 RLIRVTKNSRVCSHCHEAAKFISKMCSREIILRDSNRFHHFEQGRCSCRGYW 870



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 141/451 (31%), Positives = 219/451 (48%), Gaps = 30/451 (6%)

Query: 14  PSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD 73
           PS QA + + +      S + +  +  +L     R C   DL  A+  + +    GV  D
Sbjct: 38  PSGQALEAAASPRGAEKSPDWVPTSDVNL--HIQRLCRSGDLEEALGLLGS---DGV--D 90

Query: 74  SVTYAELIKCCLARHAVEEAKLVHNHVLS---GGFEPETFLVNILLNMHVKFSLLEEAQV 130
             +Y  +++ C    ++E  K  H  V +   G    +  L   L+ M++K   LE A+ 
Sbjct: 91  DRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARR 150

Query: 131 LFDQMPE-RNVVSWTTMISAYCDAKMNDKALELLIF--MLREGVRPNMFTYSAVLRACDS 187
           +FD+MP+  +V  WT ++S Y  AK  D    +L+F  M   GVRP+ +T S VL+    
Sbjct: 151 VFDEMPQVSDVRVWTALMSGY--AKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAG 208

Query: 188 LIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L  +     +H  + K+GF S   V +AL+  YAK    ++A  VF+ MP RD++ WNS+
Sbjct: 209 LGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSM 268

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           I G   N   D+A+ L+ RM   G   D +TL SVL AC  L LL LG  VH + +K  +
Sbjct: 269 ISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGF 328

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
                L N LLDMY  C        +F  M+QK+V+SW+ MI+   + G   +   LF+ 
Sbjct: 329 ISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQE 388

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY----SCMIDLL 418
           M +   +P+   I   L    HA    +   H KS+   Y I  G E      + ++++ 
Sbjct: 389 MGLEGTRPDIFAITSAL----HAFAGNELLKHGKSVHG-YAIRNGMEKVLAVTNALMEMY 443

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            + G ++EA KLI +     D ++W  L+G 
Sbjct: 444 VKCGNMEEA-KLIFDGVVSKDMISWNTLIGG 473


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/581 (37%), Positives = 341/581 (58%), Gaps = 6/581 (1%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G++    T+A L+   +     +  + VH  VL   F    F+ N LL+ + K   ++E 
Sbjct: 236 GIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEV 295

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
             LF +MPE + +S+  +I++Y       ++ +L   +         F ++ +L    S 
Sbjct: 296 GKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSS 355

Query: 189 IILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
           + LR   Q+HC  I VG   +  V +AL+D+YAK    + A+ +F+ +  +  V W ++I
Sbjct: 356 LNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMI 415

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YD 303
             + Q    +E +N++  M+R G  ADQ+T  S+LRAC  LA + LG Q+H  +++  + 
Sbjct: 416 SAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFM 475

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            ++   +ALLD Y KCG + DA+  F  M +++ +SW+ +IS  AQNG     L  F+ M
Sbjct: 476 SNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQM 535

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
             S  KP+ ++ + VL ACSH GFVE+   HF SM + Y + P REHY+ M+D+L R G+
Sbjct: 536 IQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGR 595

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL-DPQDPGTYILLSN 482
             EA KL+ EMP+EP  + W ++L +C++H+N +LA  AA ++ N+ D +D   YI +SN
Sbjct: 596 FDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSN 655

Query: 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKH 542
           IYA + +WD VA+V+K MR RG+ K P  SW+E+  Q H F+  D SHP++ KI + +  
Sbjct: 656 IYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINA 715

Query: 543 LIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
           L +++   GY PDT   L D++   K +S++YHSE+ AI F LM+   G  I + KNLR 
Sbjct: 716 LSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRA 775

Query: 603 CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           C DCH   K+ +++  + I++RD  R+HHF+DG CSCGDYW
Sbjct: 776 CTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/285 (31%), Positives = 150/285 (52%), Gaps = 6/285 (2%)

Query: 90  VEEAKLVHNH-VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           +E   LVH H V        T  +N++++ H+KF  L +A+ LFD M ER  VSWT +I 
Sbjct: 54  LERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIG 113

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFES 205
            Y  +  + +A  L   M R G+ P+  T   +L     L    ++ Q+H  +IK+G+E 
Sbjct: 114 GYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEY 173

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           ++ V ++L+D Y K   L  A  +F  M  +D V +NS++ G++     +EA+ L+  + 
Sbjct: 174 NLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELH 233

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLE 323
            +G      T  ++L A  GL   + G QVH  VLK +   ++ + NALLD Y K   ++
Sbjct: 234 NSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVD 293

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
           +   +F  M + D IS++ +I+  A NG  +E+  LF  ++ +R 
Sbjct: 294 EVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRF 338



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 93/194 (47%), Gaps = 21/194 (10%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  GV AD  T+A +++ C    ++   + +H+ ++  GF    +  + LL+ + K   
Sbjct: 434 MRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGC 493

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           + +A   F +MPERN VSW  +ISAY      D  L     M++ G +P+  ++ +VL A
Sbjct: 494 MTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSA 553

Query: 185 CDSLIILRQLHCGIIKVG---FESDVFV---------RSALIDIYAKLGELRNAECVFNE 232
           C         HCG ++     F S   +          ++++D+  + G    AE +  E
Sbjct: 554 CS--------HCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTE 605

Query: 233 MPTR-DLVVWNSII 245
           MP     ++W+S++
Sbjct: 606 MPFEPSEIMWSSVL 619



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 128/294 (43%), Gaps = 49/294 (16%)

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +  H++K  ++ +   +N  ++ + + G L  A  VF +M  K+ IS + MISG  + G 
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
             +A +LF+ M V R   ++  ++G     + +   ++ +  +  M++  GI+P    Y 
Sbjct: 90  LSKARELFDGM-VERTAVSWTILIGGYLQSNQS---KEAFRLYADMRR-GGIEPD---YV 141

Query: 413 CMIDLLGRAGKLQ--EAVKLIH----EMPYEPDAVTWRALLGA-CKVHRNTDLAICAAKK 465
            ++ LL   G+L+    +  IH    ++ YE + +   +L+ A CK H    LA    K 
Sbjct: 142 TLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTH-CLYLASQLFKH 200

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI-----------TKEPGCSWI 514
           +LN   +D  T+  L   Y+N    +E  E+   +   GI           +   G    
Sbjct: 201 MLN---KDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDT 257

Query: 515 EVNKQIHAFNVAD----------------SSHPQIDKINKHLKHLIQKLVGVGY 552
           +  +Q+H F +                  S H Q+D++ K    +  +L G+ Y
Sbjct: 258 KFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEM-PELDGISY 310


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/574 (40%), Positives = 343/574 (59%), Gaps = 10/574 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           YA L++ C++  A+E  K +H  +   G      L   L+N +   + L  A  LFD++P
Sbjct: 61  YASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIP 120

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQ 193
           + N+  W  +I AY     ++ A+ L   ML  G++P+ FT   VL+AC +L  +   R 
Sbjct: 121 KGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRV 180

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H  +I+ G+E DVFV +AL+D+YAK G + +A  VF+++  RD V+WNS++  +AQN  
Sbjct: 181 IHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGH 240

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH----VHVLKYDHDLILN 309
            DE+L+L   M   G    ++TL +V+ +   +A L  G ++H     H  +Y+  +   
Sbjct: 241 PDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKV--K 298

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
            AL+DMY KCGS++ A  +F R+ +K V+SW+ +I+G A +G + EAL LFE M +   +
Sbjct: 299 TALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERM-MKEAQ 357

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           P++IT VG L ACS    +++G   +  M +   I+P  EHY+CM+DLLG  G+L EA  
Sbjct: 358 PDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYD 417

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489
           LI +M   PD+  W ALL +CK H N +LA  A +K++ L+P D G Y++L+N+YA S K
Sbjct: 418 LIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSGK 477

Query: 490 WDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549
           W+ VA +R+ M  +GI K   CSWIEV  +++AF   D SHP    I   LK L   +  
Sbjct: 478 WEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMRE 537

Query: 550 VGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
            GY PDT  V  D+E ++K D +  HSE+LAI FGL+S   G  + I KNLRIC DCH  
Sbjct: 538 AGYVPDTGSVFHDVEEDEKTDMVCSHSERLAIAFGLISTLPGTRLLITKNLRICEDCHVA 597

Query: 610 AKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            K  +K+  + I +RD  RYHHF+ G CSCGDYW
Sbjct: 598 IKFISKITEREITVRDVNRYHHFRHGLCSCGDYW 631



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 184/370 (49%), Gaps = 27/370 (7%)

Query: 32  CNTITRNSSSLLDDFTR------------FCYQRDLPRAMKAMHAMQCHGVRADSVTYAE 79
           CN++ RN+  L D   +            + +      A+   H M  +G++ D+ T   
Sbjct: 106 CNSL-RNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPF 164

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139
           ++K C A   + E +++H  V+  G+E + F+   L++M+ K   + +A+ +FD++ +R+
Sbjct: 165 VLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRD 224

Query: 140 VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHC 196
            V W +M++AY      D++L L   M  +GVRP   T   V+ +   +  L   R++H 
Sbjct: 225 AVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHG 284

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
              + GF+ +  V++ALID+YAK G ++ A  +F  +  + +V WN+II G+A +    E
Sbjct: 285 FGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVE 344

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH---VHVLKYDHDLILNNALL 313
           AL+L++RM +     D  T    L AC+   LL+ G  ++   V   + +  +     ++
Sbjct: 345 ALDLFERMMKEA-QPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMV 403

Query: 314 DMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP-- 370
           D+   CG L++A  +  +M +  D   W  +++    +G  + A    E  K+  ++P  
Sbjct: 404 DLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALE--KLIELEPDD 461

Query: 371 --NYITIVGV 378
             NY+ +  +
Sbjct: 462 SGNYVILANM 471


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/522 (43%), Positives = 322/522 (61%), Gaps = 4/522 (0%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L  A+ +FD +   +  ++ T+I A+ D+  +         M   GV P+ FT+  VL+A
Sbjct: 38  LSYARSIFDLIAFPDTFAFNTIIRAHADSSPSFSLSLFSK-MAMAGVSPDHFTFPFVLKA 96

Query: 185 CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           C  L     LH  + K+GF+SDV+V++ LI  Y   G L  A  VF EMP RDLV W+S+
Sbjct: 97  CARLQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSM 156

Query: 245 IGGFAQNSDVDEALNLYKRMKRAG-FAADQSTLTSVLRACTGLALLELGTQVHVHVLK-- 301
           I  FA+N    EAL L++RM+  G    D+  + SV+ A + L  LELG  +   + +  
Sbjct: 157 IACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNG 216

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
            +  + L  AL+DM+ +CG +E++M VF  M +++V++W+ +I+GLA +G S EAL++F 
Sbjct: 217 LEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFY 276

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            M+    +P+++T  GVL ACSH G V +GW+ F+S++  YG++P  EHY CM+DLLGRA
Sbjct: 277 EMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRA 336

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           G L EA K +  MP  P+++ WR LLGAC  H   +LA    +KI  LD    G Y+LLS
Sbjct: 337 GLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLS 396

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
           N+Y    +W E A VR +MR + I+K+PGCS I VN  IH F   D++HPQ + I + L 
Sbjct: 397 NVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLV 456

Query: 542 HLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
            +I  L  VGY PD + VL D+E E+KE ++ YHSEKLA+ F L+     +TIR+ KNLR
Sbjct: 457 SMIDSLKVVGYTPDISNVLFDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLR 516

Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           IC DCH F K  + +  + I+IRD  R+HHF  G+CSC DYW
Sbjct: 517 ICHDCHCFMKYASDVFEREIIIRDRNRFHHFSKGSCSCRDYW 558



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 156/311 (50%), Gaps = 17/311 (5%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   GV  D  T+  ++K C AR  ++    +H+ +   GF+ + ++ N L++ +     
Sbjct: 78  MAMAGVSPDHFTFPFVLKAC-AR--LQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGF 134

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLR 183
           L+ A  +F++MPER++VSW++MI+ +       +AL L   M   G V+P+      VL 
Sbjct: 135 LDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVI---VLS 191

Query: 184 ACDSLIILRQLHCG------IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
              ++ IL  L  G      I + G E  V + +AL+D++++ G +  +  VF+EM  R+
Sbjct: 192 VVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERN 251

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           ++ W ++I G A +    EAL ++  M+  GF  D  T T VL AC+   L+  G  V  
Sbjct: 252 VLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFE 311

Query: 298 HVL-KYDHDLILNN--ALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYS 353
            +  +Y  + +  +   ++D+  + G L +A      M I+ + I W T++     + Y 
Sbjct: 312 SIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYI 371

Query: 354 QEALKLFESMK 364
           + A K+ E + 
Sbjct: 372 ELAEKVKEKIN 382



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 95/214 (44%), Gaps = 22/214 (10%)

Query: 58  AMKAMHAMQCHG-VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           A+     MQ  G V+ D V    ++        +E  K +   +   G E    L   L+
Sbjct: 169 ALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALV 228

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M  +   +EE+  +FD+M ERNV++WT +I+       + +AL +   M   G +P+  
Sbjct: 229 DMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHV 288

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRS------------ALIDIYAKLGELR 224
           T++ VL AC         H G++  G+     +R+             ++D+  + G L 
Sbjct: 289 TFTGVLVACS--------HGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLN 340

Query: 225 NAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
            A    + MP R + ++W +++G    ++ ++ A
Sbjct: 341 EACKFVDGMPIRPNSIIWRTLLGACVNHNYIELA 374


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/578 (39%), Positives = 348/578 (60%), Gaps = 22/578 (3%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL------LEEAQVLFD 133
           L++ C +  +  + K +H   +  G  P+    N   N H+ F+L      +  A  +F+
Sbjct: 40  LVQLCGSSQS--KLKQIHAFSIRHGVPPQ----NPDFNKHLIFALVSLSAPMSFAAQIFN 93

Query: 134 QMPERNVVSWTTMISAYCDAKMNDKALELLIFM-LREGVRPNMFTYSAVLRACDSLI--- 189
           Q+   N+ +W TMI  + +++    A+EL   M     + P+  T+  + +A   L+   
Sbjct: 94  QIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVS 153

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           +   +H  +++ GF+S  FV+++L+ +Y+  G   +A  VF  M  RD V WNS+I GFA
Sbjct: 154 LGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFA 213

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN 309
            N   +EAL LY+ M   G   D  T+ S+L AC  L  L LG +VH++++K    L+ N
Sbjct: 214 LNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVG--LVQN 271

Query: 310 ----NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
               NALLD+Y KCG+  DA  VF  M ++ V+SW+++I GLA NG   EALKLF  ++ 
Sbjct: 272 QHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELER 331

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
             +KP+ IT VGVL+ACSH G +++G+N+F+ MK+ YGI P  EH+ CM+DLL RAGK+ 
Sbjct: 332 QGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVG 391

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           +A   I  MP  P+AV WR LLGAC +H + +L   A  +I  L+ +  G ++LLSN+YA
Sbjct: 392 DAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYA 451

Query: 486 NSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQ 545
           + ++W +V  VRK M  +G+ K PG S +E+  +++ F + D SHPQ ++    L  + Q
Sbjct: 452 SERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQ 511

Query: 546 KLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGD 605
            L   GY P T  VL D+E E+KE ++ +H+EK+AI F L++   G  IRI KNLR+C D
Sbjct: 512 LLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCAD 571

Query: 606 CHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           CH   KL +K+  + I++RD  R+HHF+DG+CSC DYW
Sbjct: 572 CHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 176/356 (49%), Gaps = 31/356 (8%)

Query: 12  TKPSSQARQ-FSLTITPPVASCNTITR------NSSSLLDDFTRFCYQRDLPRAMKAMHA 64
           + P S A Q F+    P + + NT+ R      N S  ++ F++             MHA
Sbjct: 82  SAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQ-------------MHA 128

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
                +  D+ T+  L K       V   + +H+ V+  GF+   F+ N L++M+  F  
Sbjct: 129 AS--SILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGF 186

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            E A  +F+ M  R+ V+W ++I+ +    M ++AL L   M  EGV P+ FT  ++L A
Sbjct: 187 AESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSA 246

Query: 185 C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C    +L +  ++H  ++KVG   +    +AL+D+Y+K G  R+A+ VF+EM  R +V W
Sbjct: 247 CVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSW 306

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            S+I G A N   +EAL L+  ++R G    + T   VL AC+   +L+ G   +   +K
Sbjct: 307 TSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFN-YFRRMK 365

Query: 302 YDHDLIL----NNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGY 352
            ++ ++     +  ++D+ C+ G + DA      M +  + + W T++     +G+
Sbjct: 366 EEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGH 421


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/585 (37%), Positives = 351/585 (60%), Gaps = 6/585 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  GV  + +T   +       H + E K +++ V S   E +  ++N  +NM     L
Sbjct: 198 MQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGL 257

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L +A+ LF+ M +R+VV+W  +I+ Y   +   +A+ L   + ++G++ N  T+  +L  
Sbjct: 258 LGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNV 317

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
             SL  L   + +H  + + G++ DV V +AL+ +Y +      A  +F +M ++D++ W
Sbjct: 318 YTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITW 377

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
             +   +AQN    EAL L++ M+  G     +TL +VL  C  LA L+ G Q+H H+++
Sbjct: 378 TVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIE 437

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
             +  ++++  AL++MY KCG + +A SVF +M ++D++ W++M+   AQ+GY  E L+L
Sbjct: 438 NGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQL 497

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F  M++   K + ++ V VL A SH+G V DG+ +F +M + + I P  E Y C++DLLG
Sbjct: 498 FNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLG 557

Query: 420 RAGKLQEAVKLIHEMPY-EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
           RAG++QEAV ++ ++    PD + W  LLGAC+ H  TD A  AA+++L  DP   G Y+
Sbjct: 558 RAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYV 617

Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
           +LSN+YA +  WD V  +RK MR+RG+ KEPG S IE+  ++H F   D SHP+   I  
Sbjct: 618 VLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYA 677

Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRK 598
            L  L  ++   GY PDT  +L D+E E+KED + YHSE+LAI FGLMS   G  +R+ K
Sbjct: 678 ELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIK 737

Query: 599 NLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           NLR+C DCHT  K  +K+  + I++RD  R+H+F+DG CSC DYW
Sbjct: 738 NLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 126/415 (30%), Positives = 211/415 (50%), Gaps = 9/415 (2%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           +C Q D  RA+   + MQ   V    VTY  ++  C +  ++++   +H  +L  GFE +
Sbjct: 81  YCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGD 140

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F+   L+NM+ K   +  A   F ++  R+VVSWT MI+A         A  L   M  
Sbjct: 141 VFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQL 200

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           +GV PN  T   V  A      L +   ++  +     ESDV V ++ ++++   G L +
Sbjct: 201 DGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGD 260

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F +M  RD+V WN +I  + QN +  EA+ L+ R+++ G  A+  T   +L   T 
Sbjct: 261 ARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTS 320

Query: 286 LALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L  L  G  +H  V    YD D+++  AL+ +Y +C +   A  +F  M  KDVI+W+ M
Sbjct: 321 LTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVM 380

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFY 402
               AQNG+ +EAL+LF+ M++   +P   T+V VL  C+H   ++ G   H   ++  +
Sbjct: 381 CVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGF 440

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457
            ++   E  + +I++ G+ GK+ EA  +  +M  + D + W ++LGA   H   D
Sbjct: 441 RMEMVVE--TALINMYGKCGKMAEARSVFEKMA-KRDILVWNSMLGAYAQHGYYD 492



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 189/381 (49%), Gaps = 7/381 (1%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           + D+  +  L++ C +   V+  + VH HV   GFE    +   L+ M+ +   + EAQ 
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 61

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           +F+ +  ++V +WT MI  YC     D+AL +   M  E V P   TY A+L AC S   
Sbjct: 62  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 121

Query: 191 LR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L+   ++H  I++ GFE DVFV +ALI++Y K G +R A   F  +  RD+V W ++I  
Sbjct: 122 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 181

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHD 305
             Q+     A  LY+RM+  G   ++ TL +V  A      L  G  ++  V     + D
Sbjct: 182 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESD 241

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           + + N+ ++M+   G L DA  +F  M+ +DV++W+ +I+   QN    EA++LF  ++ 
Sbjct: 242 VRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQ 301

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
             IK N IT V +L   +    +  G      + K  G D      + ++ L GR     
Sbjct: 302 DGIKANDITFVLMLNVYTSLTSLAKG-KVIHELVKEAGYDRDVVVATALMSLYGRCEAPG 360

Query: 426 EAVKLIHEMPYEPDAVTWRAL 446
           +A K+  +M    D +TW  +
Sbjct: 361 QAWKIFVDMG-SKDVITWTVM 380



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 192/392 (48%), Gaps = 18/392 (4%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           T +    +   A++    +Q  G++A+ +T+  ++    +  ++ + K++H  V   G++
Sbjct: 281 TFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYD 340

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
            +  +   L++++ +     +A  +F  M  ++V++WT M  AY       +AL+L   M
Sbjct: 341 RDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEM 400

Query: 167 LREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
             EG RP   T  AVL  C  L  L   RQ+H  II+ GF  ++ V +ALI++Y K G++
Sbjct: 401 QLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKM 460

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
             A  VF +M  RD++VWNS++G +AQ+   DE L L+ +M+  G  AD  +  SVL A 
Sbjct: 461 AEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSAL 520

Query: 284 TGLALLELGTQVHVHVLKYDHDLI----LNNALLDMYCKCGSLEDAMSVFSRMIQ--KDV 337
           +    +  G Q  V +L+ D  +     L   ++D+  + G +++A+ +  ++     D 
Sbjct: 521 SHSGSVTDGYQYFVAMLQ-DFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDG 579

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           I W T++     +  + +A    E  +V    P++     VL     A    DG N  + 
Sbjct: 580 ILWMTLLGACRTHNKTDQAKAAAE--QVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRK 637

Query: 398 MKKFYGI--DPGREHYSCMIDLLGRAGKLQEA 427
           + +  G+  +PGR      I++L R  +  E 
Sbjct: 638 LMRSRGVKKEPGRSS----IEILNRVHEFLEG 665



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 110/229 (48%), Gaps = 9/229 (3%)

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAM 326
           F  D +   ++L+ C+    ++ G +VH HV    ++ + ++   L+ MY +CGS+ +A 
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            VF  + +KDV +W+ MI    Q G    AL +F  M+   + P  +T V +L AC+   
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 387 FVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
            ++DG   H + +++  G +      + +I++  + G ++ A      + +  D V+W A
Sbjct: 121 SLKDGMEIHGQILQQ--GFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHR-DVVSWTA 177

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS--NIYANSQKWDE 492
           ++ AC  H    LA    ++ + LD   P    L +  N Y +     E
Sbjct: 178 MIAACVQHDQFALARWLYRR-MQLDGVVPNKITLYTVFNAYGDPHYLSE 225


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/694 (36%), Positives = 380/694 (54%), Gaps = 88/694 (12%)

Query: 28  PVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLAR 87
           PV   +T+  N+       T F +  D   A+     M+  G + D+ T+A ++   LA 
Sbjct: 107 PVCMRDTVMYNAM-----ITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVL-AGLAL 160

Query: 88  HAVEEAKLVHNHV--LSGGFEPETFLVNILLNMHVKF----SLLEEAQVLFDQMPERNVV 141
            A +E + V  H   L  G    T + N L++++ K     SLL  A+ +FD++ E++  
Sbjct: 161 VADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDER 220

Query: 142 SWTTM--------------------------------ISAYCDAKMNDKALELLIFMLRE 169
           SWTTM                                IS Y +     +ALE++  M+  
Sbjct: 221 SWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSS 280

Query: 170 GVRPNMFTYSAVLRACDSLIIL---RQLHCGIIK---VGFESDVFVRSALIDIYAKLGEL 223
           G+  + FTY +V+RAC +  +L   +Q+H  +++     F  D    ++L+ +Y K G+ 
Sbjct: 281 GIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFD----NSLVSLYYKCGKF 336

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGF-------------------------------AQNS 252
             A  +F +MP +DLV WN+++ G+                               A+N 
Sbjct: 337 DEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENG 396

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNN 310
             +E L L+  MKR GF       +  +++C  L     G Q H  +LK  +D  L   N
Sbjct: 397 FGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGN 456

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           AL+ MY KCG +E+A  VF  M   D +SW+ +I+ L Q+G+  EA+ ++E M    I+P
Sbjct: 457 ALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRP 516

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           + IT++ VL ACSHAG V+ G  +F SM+  Y I PG +HY+ +IDLL R+GK  +A  +
Sbjct: 517 DRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESV 576

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
           I  +P++P A  W ALL  C+VH N +L I AA K+  L P+  GTY+LLSN++A + +W
Sbjct: 577 IESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQW 636

Query: 491 DEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGV 550
           +EVA VRK MR RG+ KE  CSWIE+  Q+H F V D+SHP+ + +  +L+ L +++  +
Sbjct: 637 EEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRL 696

Query: 551 GYAPDTNYVLQDLEGE-QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
           GY PDT++VL D+E +  KED +  HSEK+A+ FGLM L  G TIRI KNLR CGDCH F
Sbjct: 697 GYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNF 756

Query: 610 AKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +  + +  + I++RD  R+HHF++G CSCG++W
Sbjct: 757 FRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 139/505 (27%), Positives = 229/505 (45%), Gaps = 109/505 (21%)

Query: 70  VRADSVTYAELIKCCLA--RHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           VRA +  YA  ++ CL   R +++ A+ VH ++++ GF+P   ++N L++++ K S L  
Sbjct: 8   VRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNY 67

Query: 128 AQVLFDQMPERNVVSWTTMISAYC--------------------DAKM-----------N 156
           A+ LFD++ E + ++ TTM+S YC                    D  M           N
Sbjct: 68  ARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNN 127

Query: 157 D--KALELLIFMLREGVRPNMFTYSAVLRA----CDSLIILRQLHCGIIKVGFESDVFVR 210
           D   A+ L   M  EG +P+ FT+++VL       D      Q H   +K G      V 
Sbjct: 128 DGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVS 187

Query: 211 SALIDIYAKLGE----LRNAECVFNEMPTRD----------------------------- 237
           +AL+ +Y+K       L +A  VF+E+  +D                             
Sbjct: 188 NALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDD 247

Query: 238 ---LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
              LV +N++I G+       EAL + +RM  +G   D+ T  SV+RAC    LL+LG Q
Sbjct: 248 NMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQ 307

Query: 295 VHVHVLKY-DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST----------- 342
           VH +VL+  D     +N+L+ +Y KCG  ++A ++F +M  KD++SW+            
Sbjct: 308 VHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHI 367

Query: 343 --------------------MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
                               MISGLA+NG+ +E LKLF  MK    +P      G + +C
Sbjct: 368 GEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSC 427

Query: 383 SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
           +  G   +G  +   + K  G D      + +I +  + G ++EA ++   MP   D+V+
Sbjct: 428 AVLGAYCNGQQYHAQLLKI-GFDSSLSAGNALITMYAKCGVVEEARQVFRTMPC-LDSVS 485

Query: 443 WRALLGACKVHRNTDLAICAAKKIL 467
           W AL+ A   H +   A+   +++L
Sbjct: 486 WNALIAALGQHGHGAEAVDVYEEML 510


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/617 (35%), Positives = 367/617 (59%), Gaps = 19/617 (3%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL-SGG 104
            +  C    L  A++ +  M   GV  D  T + ++  C     +   K +H + L +G 
Sbjct: 274 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGS 333

Query: 105 FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
            +  +F+ + L++M+     +   + +FD M +R +  W  MI+ Y   + + +AL L I
Sbjct: 334 LDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI 393

Query: 165 FMLRE-GVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKL 220
            M    G+  N  T + V+ AC    +      +H  ++K G + D FV++ L+D+Y++L
Sbjct: 394 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL 453

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK-----------RAGF 269
           G++  A  +F +M  RDLV WN++I G+  +   ++AL L  +M+           R   
Sbjct: 454 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 513

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMS 327
             +  TL ++L +C  L+ L  G ++H + +K +   D+ + +AL+DMY KCG L+ +  
Sbjct: 514 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 573

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           VF ++ QK+VI+W+ +I     +G  QEA+ L   M V  +KPN +T + V  ACSH+G 
Sbjct: 574 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGM 633

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD-AVTWRAL 446
           V++G   F  MK  YG++P  +HY+C++DLLGRAG+++EA +L++ MP + + A  W +L
Sbjct: 634 VDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSL 693

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           LGA ++H N ++   AA+ ++ L+P     Y+LL+NIY+++  WD+  EVR+ M+ +G+ 
Sbjct: 694 LGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVR 753

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           KEPGCSWIE   ++H F   DSSHPQ +K++ +L+ L +++   GY PDT+ VL ++E +
Sbjct: 754 KEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEED 813

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
           +KE  +  HSEKLAI FG+++ + G  IR+ KNLR+C DCH   K  +K+ ++ I++RD 
Sbjct: 814 EKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDV 873

Query: 627 IRYHHFQDGNCSCGDYW 643
            R+H F++G CSCGDYW
Sbjct: 874 RRFHRFKNGTCSCGDYW 890



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/414 (30%), Positives = 219/414 (52%), Gaps = 16/414 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV-NILLNMHVKFSLLEE 127
           G++ D+  +  L+K       +E  K +H HV   G+  ++  V N L+N++ K      
Sbjct: 92  GIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA 151

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC-- 185
              +FD++ ERN VSW ++IS+ C  +  + ALE    ML E V P+ FT  +V+ AC  
Sbjct: 152 VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN 211

Query: 186 ----DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
               + L++ +Q+H   ++ G E + F+ + L+ +Y KLG+L +++ +      RDLV W
Sbjct: 212 LPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTW 270

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N+++    QN  + EAL   + M   G   D+ T++SVL AC+ L +L  G ++H + LK
Sbjct: 271 NTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALK 330

Query: 302 ---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
               D +  + +AL+DMYC C  +     VF  M  + +  W+ MI+G +QN + +EAL 
Sbjct: 331 NGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALL 390

Query: 359 LFESMKVSR-IKPNYITIVGVLFACSHAG-FVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           LF  M+ S  +  N  T+ GV+ AC  +G F      H   +K+  G+D  R   + ++D
Sbjct: 391 LFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKR--GLDRDRFVQNTLMD 448

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
           +  R GK+  A+++  +M  + D VTW  ++       + + A+    K+ NL+
Sbjct: 449 MYSRLGKIDIAMRIFGKME-DRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLE 501



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 106/215 (49%), Gaps = 9/215 (4%)

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           W  ++    +++ + EA+  Y  M   G   D     ++L+A   L  +ELG Q+H HV 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 301 KYDH---DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           K+ +    + + N L+++Y KCG       VF R+ +++ +SW+++IS L      + AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH---YSCM 414
           + F  M    ++P+  T+V V+ ACS+    E G    K +   YG+  G  +    + +
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPE-GLMMGKQVHA-YGLRKGELNSFIINTL 242

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           + + G+ GKL  +  L+       D VTW  +L +
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSS 276


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/522 (41%), Positives = 321/522 (61%), Gaps = 4/522 (0%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L  A+ +F ++P  + +++ T+I ++        +L     M   G+  + FT+  VL+A
Sbjct: 38  LSYARYVFSRIPSPDTIAYNTIIRSHSRF-FPSHSLSYFFSMRSNGIPLDNFTFPFVLKA 96

Query: 185 CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           C  L I   LH  I+K G  SD+FV++ALI +Y   G L  A  VF+EM  RD V W+++
Sbjct: 97  CSRLQINLHLHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTV 156

Query: 245 IGGFAQNSDVDEALNLYKRMK-RAGFAADQSTLTSVLRACTGLALLELGTQVHVHV--LK 301
           I  F  N    EAL+L+++M+       D+ T+ SV+ A + L  LELG  V   +  L 
Sbjct: 157 IASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLG 216

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
           +   + L  AL+DM+ +CGS+++++ VF +M  ++V++W+ +I+GL  +G S EAL +F 
Sbjct: 217 FGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFH 276

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
           SM+ S ++P+Y+T  GVL ACSH G V++GW+ F+S++K YG+DP  +HY CM+D+LGRA
Sbjct: 277 SMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYGMDPLLDHYGCMVDILGRA 336

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           G L EA   +  MP +P+++ WR LLGAC  H N  LA     KI  +     G  +LLS
Sbjct: 337 GLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLS 396

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
           N+Y  + +W E A +R  MR + I KEPGCS I V++ IH F   D+SHPQ + I K L 
Sbjct: 397 NVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLS 456

Query: 542 HLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
            +I  L   GY   T  VL D+E E++E S+ YHSEKLA+ F ++S+   +TIRI KNLR
Sbjct: 457 SIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLR 516

Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           IC DCH+F K  +    + I+IRD  R+HHF+ G CSC DYW
Sbjct: 517 ICYDCHSFMKHISVRFERKIIIRDRNRFHHFEKGLCSCHDYW 558



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 168/332 (50%), Gaps = 22/332 (6%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAEL 80
           FS   +P   + NTI R+ S                 ++    +M+ +G+  D+ T+  +
Sbjct: 45  FSRIPSPDTIAYNTIIRSHSRFFPS-----------HSLSYFFSMRSNGIPLDNFTFPFV 93

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
           +K C     ++    +H+ ++  G   + F+ N L+ ++     LE A  +FD+M ER+ 
Sbjct: 94  LKAC---SRLQINLHLHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDS 150

Query: 141 VSWTTMISAYCDAKMNDKALELLIFM-LREGVRPNMFTYSAVLRACDSLIIL---RQLHC 196
           VSW+T+I+++ +     +AL+L   M L + V P+  T  +V+ A   L  L   R +  
Sbjct: 151 VSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRA 210

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
            I ++GF   V + +ALID++++ G +  +  VF +M  R+++ W ++I G   +    E
Sbjct: 211 FIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRSME 270

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNN--ALL 313
           AL ++  M+++G   D  T + VL AC+   L++ G  +   + K Y  D +L++   ++
Sbjct: 271 ALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYGMDPLLDHYGCMV 330

Query: 314 DMYCKCGSLEDAMSVFSRM-IQKDVISWSTMI 344
           D+  + G L +A     RM ++ + I W T++
Sbjct: 331 DILGRAGLLNEAYDFVERMPMKPNSIIWRTLL 362



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 92/201 (45%), Gaps = 21/201 (10%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V  D VT   +I        +E  + V   +   GF     L   L++M  +   ++E+ 
Sbjct: 182 VVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESI 241

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
           V+F++M  RNV++WT +I+       + +AL +   M + GV+P+  T+S VL AC    
Sbjct: 242 VVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVACS--- 298

Query: 190 ILRQLHCGIIKVGFESDVFVRSA------------LIDIYAKLGELRNAECVFNEMPTR- 236
                H G++K G++    +R              ++DI  + G L  A      MP + 
Sbjct: 299 -----HGGLVKEGWDIFESIRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKP 353

Query: 237 DLVVWNSIIGGFAQNSDVDEA 257
           + ++W +++G    ++++  A
Sbjct: 354 NSIIWRTLLGACVNHNNLGLA 374


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/557 (37%), Positives = 352/557 (63%), Gaps = 7/557 (1%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
            K VH + +    + +T + N L++M++K   +E +  +FD+M  ++ +SWTT+I+ Y  
Sbjct: 385 GKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQ 444

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFV 209
           +  + +ALE+     +EG++ +     ++L AC   +++++ +QLHC  I+ G   D+ V
Sbjct: 445 SSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGL-LDLVV 503

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
           ++ +IDIY + GE+ ++  +F  +  +D+V W S+I  +A +  ++EAL L+  M+    
Sbjct: 504 KNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDV 563

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMS 327
             D   L S+L A  GL+ L  G +VH  +++ +  +   + ++L+DMY  CGSL  A+ 
Sbjct: 564 QPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALK 623

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           VF+ +  KD++ W+ MI+    +G+ ++A+ LF+ M  + + P++++ + +L+ACSH+  
Sbjct: 624 VFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKL 683

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           V +G  +   M   Y ++P +EHY+C++DLLGR+G+ +EA + I  MP +P +V W +LL
Sbjct: 684 VNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLL 743

Query: 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507
           GAC+VH+N +LA+ AA ++L L+P +PG Y+L+SN++A   KW+   EVR  +  RG+ K
Sbjct: 744 GACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRK 803

Query: 508 EPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGV-GYAPDTNYVLQDLEGE 566
           +P CSWIE+   +H F   D+SH   ++IN  L  + ++L    GY  DT  VL D+  E
Sbjct: 804 DPACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDVSEE 863

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
           +K D +  HSE+LAI FGL++   G  +RI KNLR+CGDCH F KL +K+ ++ IV+RD 
Sbjct: 864 EKVDVLHRHSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDA 923

Query: 627 IRYHHFQDGNCSCGDYW 643
            R+HHF  G+CSCGD+W
Sbjct: 924 NRFHHFSGGSCSCGDFW 940



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 131/391 (33%), Positives = 203/391 (51%), Gaps = 27/391 (6%)

Query: 14  PSSQARQFSLT---ITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGV 70
           P +  ++FS T   I+PP         + +SL     + C + +L +A++ + + Q  G 
Sbjct: 9   PPNPYKKFSTTPPSISPP---------DPTSL----KQLCKEGNLRQALRLLTS-QTPGR 54

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNH-VLSGGFE-PETFLVNILLNMHVKFSLLEEA 128
                 Y  ++    A+ AV +   VH H V +G  E  + FL   LL M+ K   + +A
Sbjct: 55  SPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADA 114

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM---LREGVRPNMFTYSAVLRAC 185
           ++LFD M  R V SW  +I AY  +    +AL +   M      GV P+  T ++VL+A 
Sbjct: 115 RLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKAS 174

Query: 186 DSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM-PTRDLVVW 241
                 R   ++H   +K G +   FV +ALI +YAK G L +A  VF  M   RD+  W
Sbjct: 175 GVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASW 234

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           NS+I G  QN    +AL+L++ M+RA  + +  T   VL+ CT LA L LG ++H  +LK
Sbjct: 235 NSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLK 294

Query: 302 YDHDL-ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
              ++ I  NALL MY KCG ++ A+ VF  + +KD ISW++M+S   QNG   EA++  
Sbjct: 295 SGSEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFI 354

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
             M     +P++  IV +  A  H G++ +G
Sbjct: 355 SEMLRGGFQPDHACIVSLSSAVGHLGWLLNG 385



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 10/167 (5%)

Query: 292 GTQVHVHVLKYDH----DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
           G QVH H +        D  L   LL MY KCG + DA  +F  M  + V SW+ +I   
Sbjct: 77  GVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAY 136

Query: 348 AQNGYSQEALKLFESMKVSR---IKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYG 403
             +G + EAL ++ +M++S    + P+  T+  VL A    G    G   H  ++K  +G
Sbjct: 137 LSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVK--HG 194

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           +D      + +I +  + G L  A+++   M    D  +W +++  C
Sbjct: 195 LDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGC 241



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 95/204 (46%), Gaps = 7/204 (3%)

Query: 50  CYQRD--LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY     L  A+     MQ   V+ DSV    ++       ++ + K VH  ++   F  
Sbjct: 541 CYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHM 600

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           E  +V+ L++M+     L  A  +F+ +  +++V WT MI+A        +A++L   ML
Sbjct: 601 EEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRML 660

Query: 168 REGVRPNMFTYSAVLRACDSLIILRQLHC--GIIKVGFESDVFVR--SALIDIYAKLGEL 223
           + GV P+  ++ A+L AC    ++ +  C   ++   +  + +    + ++D+  + G+ 
Sbjct: 661 QTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQT 720

Query: 224 RNAECVFNEMPTR-DLVVWNSIIG 246
             A      MP +   VVW S++G
Sbjct: 721 EEAYEFIKSMPLKPKSVVWCSLLG 744


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/584 (40%), Positives = 340/584 (58%), Gaps = 28/584 (4%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF----------SLLEEAQ 129
           L++  L   +V  AK +H   L     P   L + LL  H+ F           LL    
Sbjct: 21  LLRLHLPSPSVAAAKQIHARALRAAGVP---LSHPLLAKHLLFHLASLRAGPPPLLYAVT 77

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
           VL   +P+ +  S  T++     +     AL L     R    P+  TY  +L+AC  L+
Sbjct: 78  VLSCLLPDPDPFSLNTVLRIAASSAHPRIALAL---HRRRLAPPDTHTYPPLLQACTRLL 134

Query: 190 ILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT--RDLVVWNSI 244
            LR+   LH    K G  + VFV+++L+  Y   G   +A  VF+E+P   R+LV WNS+
Sbjct: 135 ALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSV 194

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
           + GFA N   +E L +++    A    D  T+ SVL AC  +  L LG +VHV   K   
Sbjct: 195 MNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVG- 253

Query: 305 DLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKL 359
            L+ N    NAL+D+Y KCG +EDA  VF  M + + V+SW+++I GLA NG+ ++AL+L
Sbjct: 254 -LVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALEL 312

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F  M+  R+ P  IT+VGVL+ACSH G V+DG+ +F  M+  YGI PG EH  CM+DLLG
Sbjct: 313 FGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLG 372

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           RAG+++EA   I  MP EP+AV WR LLGAC +H+  +L   A  +++ LDP   G Y+L
Sbjct: 373 RAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYVL 432

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LSN+YA   +W +   +RKTM   G+ K PG S +E+   ++ F + D SHP+ D+I + 
Sbjct: 433 LSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSLVELRNSVYEFVMGDRSHPESDQIYQT 492

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
           L  + ++L   GY P T+ VL D+E E+KE ++ YHSE+LAI F L+    G  IRI KN
Sbjct: 493 LAEIAERLRCQGYVPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGSPIRIVKN 552

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           LR+CGDCH   KL +K+ ++ I++RD  R+HHF+ G CSC DYW
Sbjct: 553 LRMCGDCHLVIKLISKVYDREIIVRDRSRFHHFKGGECSCKDYW 596


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/617 (35%), Positives = 367/617 (59%), Gaps = 19/617 (3%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL-SGG 104
            +  C    L  A++ +  M   GV  D  T + ++  C     +   K +H + L +G 
Sbjct: 274 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGS 333

Query: 105 FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
            +  +F+ + L++M+     +   + +FD M +R +  W  MI+ Y   + + +AL L I
Sbjct: 334 LDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI 393

Query: 165 FMLRE-GVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKL 220
            M    G+  N  T + V+ AC    +      +H  ++K G + D FV++ L+D+Y++L
Sbjct: 394 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL 453

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK-----------RAGF 269
           G++  A  +F +M  RDLV WN++I G+  +   ++AL L  +M+           R   
Sbjct: 454 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 513

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMS 327
             +  TL ++L +C  L+ L  G ++H + +K +   D+ + +AL+DMY KCG L+ +  
Sbjct: 514 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 573

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           VF ++ QK+VI+W+ +I     +G  QEA+ L   M V  +KPN +T + V  ACSH+G 
Sbjct: 574 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGM 633

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD-AVTWRAL 446
           V++G   F  MK  YG++P  +HY+C++DLLGRAG+++EA +L++ MP + + A  W +L
Sbjct: 634 VDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSL 693

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           LGA ++H N ++   AA+ ++ L+P     Y+LL+NIY+++  WD+  EVR+ M+ +G+ 
Sbjct: 694 LGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVR 753

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           KEPGCSWIE   ++H F   DSSHPQ +K++ +L+ L +++   GY PDT+ VL ++E +
Sbjct: 754 KEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEED 813

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
           +KE  +  HSEKLAI FG+++ + G  IR+ KNLR+C DCH   K  +K+ ++ I++RD 
Sbjct: 814 EKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDV 873

Query: 627 IRYHHFQDGNCSCGDYW 643
            R+H F++G CSCGDYW
Sbjct: 874 RRFHRFKNGTCSCGDYW 890



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/414 (30%), Positives = 219/414 (52%), Gaps = 16/414 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV-NILLNMHVKFSLLEE 127
           G++ D+  +  L+K       +E  K +H HV   G+  ++  V N L+N++ K      
Sbjct: 92  GIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA 151

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC-- 185
              +FD++ ERN VSW ++IS+ C  +  + ALE    ML E V P+ FT  +V+ AC  
Sbjct: 152 VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN 211

Query: 186 ----DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
               + L++ +Q+H   ++ G E + F+ + L+ +Y KLG+L +++ +      RDLV W
Sbjct: 212 LPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTW 270

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N+++    QN  + EAL   + M   G   D+ T++SVL AC+ L +L  G ++H + LK
Sbjct: 271 NTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALK 330

Query: 302 ---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
               D +  + +AL+DMYC C  +     VF  M  + +  W+ MI+G +QN + +EAL 
Sbjct: 331 NGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALL 390

Query: 359 LFESMKVSR-IKPNYITIVGVLFACSHAG-FVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           LF  M+ S  +  N  T+ GV+ AC  +G F      H   +K+  G+D  R   + ++D
Sbjct: 391 LFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKR--GLDRDRFVQNTLMD 448

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
           +  R GK+  A+++  +M  + D VTW  ++       + + A+    K+ NL+
Sbjct: 449 MYSRLGKIDIAMRIFGKME-DRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLE 501



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 106/215 (49%), Gaps = 9/215 (4%)

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           W  ++    +++ + EA+  Y  M   G   D     ++L+A   L  +ELG Q+H HV 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 301 KYDH---DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           K+ +    + + N L+++Y KCG       VF R+ +++ +SW+++IS L      + AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH---YSCM 414
           + F  M    ++P+  T+V V+ ACS+    E G    K +   YG+  G  +    + +
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPE-GLMMGKQVHA-YGLRKGELNSFIINTL 242

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           + + G+ GKL  +  L+       D VTW  +L +
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSS 276


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/581 (37%), Positives = 341/581 (58%), Gaps = 6/581 (1%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G++    T+A L+   +     +  + VH  VL   F    F+ N LL+ + K   ++E 
Sbjct: 236 GIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEV 295

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
             LF +MPE + +S+  +I++Y       ++ +L   +         F ++ +L    S 
Sbjct: 296 GKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSS 355

Query: 189 IILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
           + LR   Q+HC  I VG   +  V +AL+D+YAK    + A+ +F+ +  +  V W ++I
Sbjct: 356 LNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMI 415

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YD 303
             + Q    +E +N++  M+R G  ADQ+T  S+LRAC  LA + LG Q+H  +++  + 
Sbjct: 416 SAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFM 475

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            ++   +ALLD Y KCG + DA+  F  M +++ +SW+ +IS  AQNG     L  F+ M
Sbjct: 476 SNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQM 535

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
             S  KP+ ++ + VL ACSH GFVE+   HF SM + Y + P REHY+ M+D+L R G+
Sbjct: 536 IQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGR 595

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL-DPQDPGTYILLSN 482
             EA KL+ EMP+EP  + W ++L +C++H+N +LA  AA ++ N+ D +D   YI +SN
Sbjct: 596 FDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSN 655

Query: 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKH 542
           IYA + +WD VA+V+K MR RG+ K P  SW+E+  Q H F+  D SHP++ KI + +  
Sbjct: 656 IYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINA 715

Query: 543 LIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
           L +++   GY PDT   L D++   K +S++YHSE+ AI F LM+   G  I + KNLR 
Sbjct: 716 LSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRA 775

Query: 603 CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           C DCH   K+ +++  + I++RD  R+HHF+DG CSCGDYW
Sbjct: 776 CTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/285 (31%), Positives = 150/285 (52%), Gaps = 6/285 (2%)

Query: 90  VEEAKLVHNH-VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           +E   LVH H V        T  +N++++ H+KF  L +A+ LFD M ER  VSWT +I 
Sbjct: 54  LERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIG 113

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFES 205
            Y  +  + +A  L   M R G+ P+  T   +L     L    ++ Q+H  +IK+G+E 
Sbjct: 114 GYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEY 173

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           ++ V ++L+D Y K   L  A  +F  M  +D V +NS++ G++     +EA+ L+  + 
Sbjct: 174 NLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELH 233

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLE 323
            +G      T  ++L A  GL   + G QVH  VLK +   ++ + NALLD Y K   ++
Sbjct: 234 NSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVD 293

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
           +   +F  M + D IS++ +I+  A NG  +E+  LF  ++ +R 
Sbjct: 294 EVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRF 338



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 93/194 (47%), Gaps = 21/194 (10%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  GV AD  T+A +++ C    ++   + +H+ ++  GF    +  + LL+ + K   
Sbjct: 434 MRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGC 493

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           + +A   F +MPERN VSW  +ISAY      D  L     M++ G +P+  ++ +VL A
Sbjct: 494 MTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSA 553

Query: 185 CDSLIILRQLHCGIIKVG---FESDVFV---------RSALIDIYAKLGELRNAECVFNE 232
           C         HCG ++     F S   +          ++++D+  + G    AE +  E
Sbjct: 554 CS--------HCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTE 605

Query: 233 MPTR-DLVVWNSII 245
           MP     ++W+S++
Sbjct: 606 MPFEPSEIMWSSVL 619



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 130/294 (44%), Gaps = 49/294 (16%)

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +  H++K  ++ +   +N  ++ + + G L  A  VF +M  K+ IS + MISG  + G 
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
             +A +LF+ M V R   ++  ++G     + +   ++ +  +  M++  GI+P    Y 
Sbjct: 90  LSKARELFDGM-VERTAVSWTILIGGYLQSNQS---KEAFRLYADMRR-GGIEPD---YV 141

Query: 413 CMIDLLGRAGKLQ--EAVKLIH----EMPYEPDAVTWRALLGA-CKVHRNTDLAICAAKK 465
            ++ LL   G+L+    +  IH    ++ YE + +   +L+ A CK H    LA    K 
Sbjct: 142 TLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTH-CLYLASQLFKH 200

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI-----------TKEPGCSWI 514
           +LN   +D  T+  L   Y+N    +E  E+   +   GI           +   G    
Sbjct: 201 MLN---KDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDT 257

Query: 515 EVNKQIHAFNVAD----------------SSHPQIDKINKHLKHLIQKLVGVGY 552
           +  +Q+H F +                  S H Q+D++ K L + + +L G+ Y
Sbjct: 258 KFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGK-LFYEMPELDGISY 310


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/611 (36%), Positives = 355/611 (58%), Gaps = 36/611 (5%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS----- 123
           GVR   +T + ++    A       + VH  +L  GF    F  + L++M+ K       
Sbjct: 140 GVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDA 199

Query: 124 --------------------------LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND 157
                                     ++ EA+ LF+ + ER+ ++WTTM++      +  
Sbjct: 200 RRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLES 259

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALI 214
           +AL++   M  EGV  + +T+ ++L AC +L  L   +Q+H  I +  +E +VFV SAL+
Sbjct: 260 EALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALV 319

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           D+Y+K   +R AE VF  M  ++++ W ++I G+ QN   +EA+ ++  M+R G   D  
Sbjct: 320 DMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDF 379

Query: 275 TLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           TL SV+ +C  LA LE G Q H   L       + ++NAL+ +Y KCGS+EDA  +F  M
Sbjct: 380 TLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEM 439

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
              D +SW+ ++ G AQ G ++E + LFE M    +KP+ +T +GVL ACS +G V+ G 
Sbjct: 440 SFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGR 499

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
           ++F SM++ + I P  +HY+CMIDL  R+G L++A + I +MP  PDA  W  LL AC++
Sbjct: 500 SYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRL 559

Query: 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCS 512
             + ++   AA+ +L LDPQ+P +Y+LL +++A+  +W++VA++R+ MR R + KEPGCS
Sbjct: 560 RGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCS 619

Query: 513 WIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSI 572
           WI+   ++H F+  D SHP    I + L+ L  K+V  GY PD + VL D+   +K   +
Sbjct: 620 WIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSVLHDVADAEKVHML 679

Query: 573 QYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF 632
            +HSEKLAI FGL+ +     IRI KNLR+C DCH   K  +K+  + I++RD +R+H F
Sbjct: 680 SHHSEKLAIAFGLIFVPPEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKF 739

Query: 633 QDGNCSCGDYW 643
            +G CSCGD+W
Sbjct: 740 SNGICSCGDFW 750



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 204/373 (54%), Gaps = 40/373 (10%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE--G 170
           N LL+   +  L+ + + LF  +P+R+ VS+  +++ +  A  + +A    + +LR+  G
Sbjct: 81  NSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAG 140

Query: 171 VRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
           VRP+  T S V+    +L    + RQ+HC I+++GF +  F  S L+D+YAK+G + +A 
Sbjct: 141 VRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDAR 200

Query: 228 CVFNEM-------------------------------PTRDLVVWNSIIGGFAQNSDVDE 256
            VF+EM                                 RD + W +++ G  QN    E
Sbjct: 201 RVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESE 260

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLD 314
           AL++++RM+  G   DQ T  S+L AC  LA LE G Q+H ++ +  Y+ ++ + +AL+D
Sbjct: 261 ALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVD 320

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           MY KC S+  A +VF RM+ K++ISW+ MI G  QNG  +EA+++F  M+   IKP+  T
Sbjct: 321 MYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFT 380

Query: 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
           +  V+ +C++   +E+G   F  +    G+ P     + ++ L G+ G +++A +L  EM
Sbjct: 381 LGSVISSCANLASLEEG-AQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEM 439

Query: 435 PYEPDAVTWRALL 447
            +  D V+W AL+
Sbjct: 440 SFH-DQVSWTALV 451



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 160/302 (52%), Gaps = 9/302 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M+  GV  D  T+  ++  C A  A+EE K +H ++    +E   F+ + L++
Sbjct: 261 ALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVD 320

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +  A+ +F +M  +N++SWT MI  Y      ++A+ +   M R+G++P+ FT
Sbjct: 321 MYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFT 380

Query: 178 YSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             +V+ +C +L  L    Q HC  +  G    V V +AL+ +Y K G + +A  +F+EM 
Sbjct: 381 LGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMS 440

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             D V W +++ G+AQ     E ++L+++M   G   D  T   VL AC+   L++ G +
Sbjct: 441 FHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKG-R 499

Query: 295 VHVHVLKYDHDLI-LNN---ALLDMYCKCGSLEDAMSVFSRMIQ-KDVISWSTMISGLAQ 349
            + H ++ DHD++ L++    ++D+Y + G L+ A     +M +  D   W+T++S    
Sbjct: 500 SYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRL 559

Query: 350 NG 351
            G
Sbjct: 560 RG 561



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 48/236 (20%), Positives = 105/236 (44%), Gaps = 26/236 (11%)

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM- 363
           +L+  N+LL    + G + D   +F+ + Q+D +S++ +++G ++ G    A   + ++ 
Sbjct: 76  NLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALL 135

Query: 364 -KVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRA 421
              + ++P+ IT+ GV+   S  G    G   H + ++  +G        S ++D+  + 
Sbjct: 136 RDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTG--SPLVDMYAKV 193

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLG--ACKVHRNTDLAICAAKKILN-LDPQDPGTYI 478
           G + +A ++  EM  +   +    + G   CK+       +  A+ +   ++ +D  T+ 
Sbjct: 194 GPIGDARRVFDEMEGKNVVMCNTMITGLLRCKM-------VAEARALFEAIEERDSITWT 246

Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGI-----------TKEPGCSWIEVNKQIHAF 523
            +      +    E  +V + MRA G+           T     + +E  KQIHA+
Sbjct: 247 TMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAY 302


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/598 (37%), Positives = 350/598 (58%), Gaps = 7/598 (1%)

Query: 52  QRDLPRAMKAMHAMQCH-GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Q  + R    M  + C   ++   +T   ++    A   +   K +H + +  GF+    
Sbjct: 213 QNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVN 272

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           +   L++M+ K   L+ A++LFD M ERNVVSW +MI AY   +   +A+ +   ML EG
Sbjct: 273 IATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEG 332

Query: 171 VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
           V+P   +    L AC  L  L   R +H   +++  + +V V ++LI +Y K  E+  A 
Sbjct: 333 VKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAA 392

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            +F ++ +R +V WN++I GFAQN    EALN + +M+      D  T  SV+ A   L+
Sbjct: 393 SMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELS 452

Query: 288 LLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
           +      +H  V++   D ++ +  AL+DMY KCG++  A  +F  M ++ V +W+ MI 
Sbjct: 453 ITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMID 512

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           G   +G  + AL+LFE M+   I+PN +T + V+ ACSH+G VE G   F  MK+ Y I+
Sbjct: 513 GYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIE 572

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
           P  +HY  M+DLLGRAG+L EA   I +MP +P    + A+LGAC++H+N + A   A++
Sbjct: 573 PSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAER 632

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
           +  L+P+D G ++LL+NIY  +  W++V +VR +M  +G+ K PGCS +E+  ++H+F  
Sbjct: 633 LFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFS 692

Query: 526 ADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGL 585
             ++HP   KI   L+ LI ++   GY PDTN +L  LE + KE  +  HSEKLAI FGL
Sbjct: 693 GSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLIL-GLEDDVKEQLLSSHSEKLAISFGL 751

Query: 586 MSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           ++ T G TI +RKNLR+C DCH   K  + +  + I++RD  R+HHF++G CSCGDYW
Sbjct: 752 LNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACSCGDYW 809



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 129/411 (31%), Positives = 217/411 (52%), Gaps = 9/411 (2%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           F    DL +A+K    M+   V      +  L+K C     +   K +H  ++  GF  +
Sbjct: 110 FAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLD 169

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F +  L NM+ K   + EA+ +FD+MPER++VSW T+++ Y    M   ALE++  M  
Sbjct: 170 LFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCE 229

Query: 169 EGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           E ++P+  T  +VL A  +L ++R   ++H   ++ GF+S V + +AL+D+YAK G L+ 
Sbjct: 230 ENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKT 289

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F+ M  R++V WNS+I  + QN +  EA+ ++++M   G      ++   L AC  
Sbjct: 290 ARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACAD 349

Query: 286 LALLELGTQVH-VHV-LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L  LE G  +H + V L+ D ++ + N+L+ MYCKC  ++ A S+F ++  + ++SW+ M
Sbjct: 350 LGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAM 409

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFY 402
           I G AQNG   EAL  F  M+   +KP+  T V V+ A +         W H   M+   
Sbjct: 410 ILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRN-- 467

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            +D      + ++D+  + G +  A +LI +M  E    TW A++     H
Sbjct: 468 CLDKNVFVTTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTH 517



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 166/297 (55%), Gaps = 5/297 (1%)

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           +   G   E      L+++  ++  ++EA  +F+ + ++  V + TM+  +      DKA
Sbjct: 60  IFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKA 119

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDI 216
           L+  + M  + V P ++ ++ +L+ C     L + +++H  ++K GF  D+F  + L ++
Sbjct: 120 LKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENM 179

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           YAK  ++  A  VF+ MP RDLV WN+I+ G++QN     AL +   M          T+
Sbjct: 180 YAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITI 239

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQ 334
            SVL A + L L+ +G ++H + ++   D ++N   AL+DMY KCGSL+ A  +F  M++
Sbjct: 240 VSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLE 299

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           ++V+SW++MI    QN   +EA+ +F+ M    +KP  ++++G L AC+  G +E G
Sbjct: 300 RNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 165/313 (52%), Gaps = 10/313 (3%)

Query: 168 REGVRPNMFTYSA--VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           R  +  N++ + A  +L  C SL  LR +   I K G   +   ++ L+ ++ + G +  
Sbjct: 28  RNYIPANVYEHPAALLLERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDE 87

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VF  +  +  V++ +++ GFA+ SD+D+AL  + RM+           T +L+ C  
Sbjct: 88  AARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGD 147

Query: 286 LALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
            A L +G ++H  ++K  +  DL     L +MY KC  + +A  VF RM ++D++SW+T+
Sbjct: 148 EAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTI 207

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFY 402
           ++G +QNG ++ AL++   M    +KP++ITIV VL A S    +  G   H  +M+   
Sbjct: 208 VAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRA-- 265

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           G D      + ++D+  + G L+ A +L+ +   E + V+W +++ A   + N   A+  
Sbjct: 266 GFDSLVNIATALVDMYAKCGSLKTA-RLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVI 324

Query: 463 AKKILN--LDPQD 473
            +K+L+  + P D
Sbjct: 325 FQKMLDEGVKPTD 337


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/617 (36%), Positives = 362/617 (58%), Gaps = 17/617 (2%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLAR--HAVEEAKLVH 97
           +SL+  + R     ++ R +  M     HG+  +S      +K C +    ++E  K++H
Sbjct: 111 NSLIAGYVRIGSNDEMLRLLVKMLR---HGLNLNSYALGSALKACGSNFSSSIECGKMLH 167

Query: 98  NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK--- 154
              +  G + +  +   LL+ + K   LE+A  +F  MP+ NVV +  MI+ +   +   
Sbjct: 168 GCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMA 227

Query: 155 --MNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFV 209
               ++A+ L   M   G++P+ FT+S++L+AC ++      +Q+H  I K   +SD F+
Sbjct: 228 DEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFI 287

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
            +AL+++Y+  G + +    F+  P  D+V W S+I G  QN   +  L L+  +  +G 
Sbjct: 288 GNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGR 347

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMS 327
             D+ T++ +L AC  LA ++ G Q+H + +K    +  I+ N+ + MY KCG ++ A  
Sbjct: 348 KPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANM 407

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
            F      D++SWS MIS  AQ+G ++EA+ LFE MK S I PN+IT +GVL ACSH G 
Sbjct: 408 TFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGL 467

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           VE+G  +F+ MKK +GI P  +H +C++DLLGRAG+L EA   I +  +E D V WR+LL
Sbjct: 468 VEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLL 527

Query: 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507
            AC+VH+ TD     A++++ L+P+   +Y+LL NIY ++       E+R  M+ RG+ K
Sbjct: 528 SACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKK 587

Query: 508 EPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQ 567
           EPG SWIEV   +H+F   D SHP    I   L+ +++++  + Y  D   V    E + 
Sbjct: 588 EPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI-DEKLVSDASEPKH 646

Query: 568 KEDS-IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
           K++S + YHSEKLA+ FG++SL +   +R+ KNLR C  CH   KL +++EN+ I++RDP
Sbjct: 647 KDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDP 706

Query: 627 IRYHHFQDGNCSCGDYW 643
           IR+H F+DG+CSCGDYW
Sbjct: 707 IRFHRFRDGSCSCGDYW 723



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 125/437 (28%), Positives = 221/437 (50%), Gaps = 27/437 (6%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEE 92
           N ++ NS  L+  +T+  +  ++   M      +   +R D  T++  +  C     +  
Sbjct: 5   NVVSWNS--LISGYTQMGFYHEV---MNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRL 59

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
            +L+H  +   G      L N L++M+ K   ++ A+++F+   E + VSW ++I+ Y  
Sbjct: 60  GRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVR 119

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRAC-----DSLIILRQLHCGIIKVGFESDV 207
              ND+ L LL+ MLR G+  N +   + L+AC      S+   + LH   +K+G + DV
Sbjct: 120 IGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDV 179

Query: 208 FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ-----NSDVDEALNLYK 262
            V +AL+D YAK+G+L +A  +F  MP  ++V++N++I GF Q     +   +EA+ L+ 
Sbjct: 180 VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 239

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCG 320
            M+  G    + T +S+L+AC+ +   E G Q+H  + KY+   D  + NAL+++Y   G
Sbjct: 240 EMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSG 299

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
           S+ED +  F    + DV+SW+++I G  QNG  +  L LF  +  S  KP+  TI  +L 
Sbjct: 300 SIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLS 359

Query: 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM----IDLLGRAGKLQEAVKLIHEMPY 436
           AC++   V+ G          Y I  G  +++ +    I +  + G +  A     E   
Sbjct: 360 ACANLAAVKSG-----EQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETK- 413

Query: 437 EPDAVTWRALLGACKVH 453
            PD V+W  ++ +   H
Sbjct: 414 NPDIVSWSVMISSNAQH 430



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 158/325 (48%), Gaps = 14/325 (4%)

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL--- 191
           MP+RNVVSW ++IS Y       + + L        +R + FT+S  L  C   + L   
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           R +H  I   G    V + ++LID+Y K G +  A  VF      D V WNS+I G+ + 
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG--LALLELGTQVHVHVLK--YDHDLI 307
              DE L L  +M R G   +   L S L+AC     + +E G  +H   +K   D D++
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVV 180

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ-----NGYSQEALKLFES 362
           +  ALLD Y K G LEDA  +F  M   +V+ ++ MI+G  Q     + ++ EA+ LF  
Sbjct: 181 VGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFE 240

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           M+   +KP+  T   +L ACS     E G      + K Y +       + +++L   +G
Sbjct: 241 MQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFK-YNLQSDEFIGNALVELYSLSG 299

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALL 447
            +++ +K  H  P + D V+W +L+
Sbjct: 300 SIEDGLKCFHSTP-KLDVVSWTSLI 323


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/579 (38%), Positives = 353/579 (60%), Gaps = 11/579 (1%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           T+  LI  C+ ++++ +   VH+ ++  G + + +L   L+NM+     ++ A  +FD+ 
Sbjct: 76  TFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDET 135

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD----SLIIL 191
            E+ +  W  +  A   A   +  L L   M   G+  N FTY+ VL+AC     S+  L
Sbjct: 136 REKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPL 195

Query: 192 R---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
           R   ++H  I++ G+E  V V + L+D+YA+ G +  A  VF  MP +++V W+++I  +
Sbjct: 196 RKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACY 255

Query: 249 AQNSDVDEALNLYKRM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDH 304
           A+N    +AL L++ M  +      +  T+ SVL+AC  LA LE G  VH +VL+   D 
Sbjct: 256 AKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDS 315

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
            L + N L+ MY +CG +     VF  M ++DVISW+++IS    +G  ++A+++FE+M 
Sbjct: 316 TLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMI 375

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
              + P+YIT + VL ACSHAG VE+    F+SM   Y I P  EHY+CM+D+LGRA +L
Sbjct: 376 NRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRL 435

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484
            EA++LI  M ++P    W +LLG+C++H N +LA  A+  +  L+P++ G Y+LLS+IY
Sbjct: 436 DEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSHIY 495

Query: 485 ANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLI 544
           A S+ W++V  VRK + +RG+ K P CSWIEV ++I++    +  +PQI+++   L  L+
Sbjct: 496 AKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSIEEYNPQIEELCAFLITLL 555

Query: 545 QKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICG 604
            ++   GY P TN V  DL+ E+KE  +  HS KLA+ FGL++ ++G+ IRI  NLR+C 
Sbjct: 556 TEIKNQGYVPQTNVVTYDLDEEEKERIVLGHSGKLAVAFGLINTSKGEIIRISNNLRLCE 615

Query: 605 DCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           DCH F K  +K  N+ I++RD  R+H F+DG CSCGDYW
Sbjct: 616 DCHAFMKFVSKFTNREILLRDVNRFHCFKDGVCSCGDYW 654



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 110/227 (48%), Gaps = 29/227 (12%)

Query: 50  CYQR-DLPRAMKAMHAMQCHGVRA-----DSVTYAELIKCCLARHAVEEAKLVHNHVLSG 103
           CY + ++P  MKA+   Q   + A     + +T   +++ C +  A+E  KLVH +VL  
Sbjct: 254 CYAKNEMP--MKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRR 311

Query: 104 GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL 163
           G +    ++N L+ M+ +   +   Q +FD M +R+V+SW ++IS Y    +  KA+++ 
Sbjct: 312 GLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIF 371

Query: 164 IFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGII---KVGFES-----DVFVR----S 211
             M+  GV P+  T+  VL AC         H G++   K+ FES      +  R    +
Sbjct: 372 ENMINRGVSPSYITFITVLCACS--------HAGLVEEAKILFESMLNKYRIHPRMEHYA 423

Query: 212 ALIDIYAKLGELRNA-ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEA 257
            ++DI  +   L  A E + N        VW S++G    + +V+ A
Sbjct: 424 CMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELA 470


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/564 (39%), Positives = 346/564 (61%), Gaps = 9/564 (1%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLN---MHVKFSLLEEAQVLFDQMPERNVVSWTT 145
           ++ E K +  + +    + +  ++  L+N   ++   S ++ A  LFDQ+ +++++ +  
Sbjct: 41  SLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNI 100

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVG 202
           M   Y  +     A  L   +L  G+ P+ +T+S++L+AC S   LR+   LHC  +K+G
Sbjct: 101 MARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLG 160

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
              ++++   LI++YA+  ++  A  VF+EM    +V +N+II G+A++S  +EAL+L++
Sbjct: 161 LNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFR 220

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCG 320
            ++ +       T+ SV+ +C  L  L+LG  +H +V K  +D  + +N AL+DM+ KCG
Sbjct: 221 ELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCG 280

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
           SL DA+S+F  M  +D  +WS MI   A +G   +A+ +FE MK   ++P+ IT +G+L+
Sbjct: 281 SLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLY 340

Query: 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
           ACSHAG VE G  +F SM K YGI PG +HY CM+DLLGRAG L EA   + ++  +   
Sbjct: 341 ACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATP 400

Query: 441 VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTM 500
           + WR LL AC  H N ++A    ++I  LD    G Y++LSN+YA   +W++V  +RK M
Sbjct: 401 ILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLM 460

Query: 501 RARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVL 560
           + RG+ K PGCS +EVN  +H F   D  H    ++ + L  L++++  VGY PDT+ V 
Sbjct: 461 KDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDTSLVY 520

Query: 561 Q-DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQ 619
             D+E E KE  ++YHSEKLA+ FGL++   G TIR+ KNLRICGDCH  AKL + +  +
Sbjct: 521 HADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGR 580

Query: 620 TIVIRDPIRYHHFQDGNCSCGDYW 643
            IVIRD  R+H F+DG CSCGD+W
Sbjct: 581 KIVIRDVQRFHRFEDGKCSCGDFW 604



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 178/356 (50%), Gaps = 13/356 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A      + C G+  D  T++ L+K C +  A+ E   +H   +  G     ++   L+N
Sbjct: 114 AFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLIN 173

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ + + +  A+ +FD+M +  +VS+  +I+ Y  +   ++AL L   +    + P   T
Sbjct: 174 MYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVT 233

Query: 178 YSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             +V+ +C    +L + + +H  + K GF+  V V +ALID++AK G L +A  +F  M 
Sbjct: 234 MLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMR 293

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD   W+++I  FA + D  +A+++++ MKR G   D+ T   +L AC+   L+E G +
Sbjct: 294 VRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQG-R 352

Query: 295 VHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQ 349
            + + +   + +         ++D+  + G L++A +   ++ I+   I W T++S  + 
Sbjct: 353 GYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACST 412

Query: 350 NGYSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI 404
           +G  + A ++ E + ++         I+  L+A    G  ED  NH + + K  G+
Sbjct: 413 HGNVEMAKRVIERIFELDDAHGGDYVILSNLYA--RVGRWED-VNHLRKLMKDRGV 465



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 160/315 (50%), Gaps = 10/315 (3%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALID---IYAKLGELRNAECVFNEMPTR 236
           ++L  C SL  L+Q+    IK   +SD+ V + LI+   +      + +A  +F+++  +
Sbjct: 34  SLLSKCTSLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDK 93

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           D++++N +  G+A+++    A +L+  +  +G   D  T +S+L+AC     L  G  +H
Sbjct: 94  DIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLH 153

Query: 297 VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
              +K   +H++ +   L++MY +C  +  A  VF  M Q  ++S++ +I+G A++    
Sbjct: 154 CFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPN 213

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSC 413
           EAL LF  ++ S I+P  +T++ V+ +C+  G ++ G W H    KK  G D   +  + 
Sbjct: 214 EALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKK--GFDKYVKVNTA 271

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           +ID+  + G L +A+ +   M    D   W A++ A   H +   AI   ++ +  +   
Sbjct: 272 LIDMFAKCGSLTDAISIFEGMRVR-DTQAWSAMIVAFATHGDGLKAISMFEE-MKREGVR 329

Query: 474 PGTYILLSNIYANSQ 488
           P     L  +YA S 
Sbjct: 330 PDEITFLGLLYACSH 344


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/617 (35%), Positives = 367/617 (59%), Gaps = 19/617 (3%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL-SGG 104
            +  C    L  A++ +  M   GV  D  T + ++  C     +   K +H + L +G 
Sbjct: 187 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGS 246

Query: 105 FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
            +  +F+ + L++M+     +   + +FD M +R +  W  MI+ Y   + + +AL L I
Sbjct: 247 LDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI 306

Query: 165 FMLRE-GVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKL 220
            M    G+  N  T + V+ AC    +      +H  ++K G + D FV++ L+D+Y++L
Sbjct: 307 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL 366

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK-----------RAGF 269
           G++  A  +F +M  RDLV WN++I G+  +   ++AL L  +M+           R   
Sbjct: 367 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 426

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMS 327
             +  TL ++L +C  L+ L  G ++H + +K +   D+ + +AL+DMY KCG L+ +  
Sbjct: 427 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 486

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           VF ++ QK+VI+W+ +I     +G  QEA+ L   M V  +KPN +T + V  ACSH+G 
Sbjct: 487 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGM 546

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD-AVTWRAL 446
           V++G   F  MK  YG++P  +HY+C++DLLGRAG+++EA +L++ MP + + A  W +L
Sbjct: 547 VDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSL 606

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           LGA ++H N ++   AA+ ++ L+P     Y+LL+NIY+++  WD+  EVR+ M+ +G+ 
Sbjct: 607 LGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVR 666

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           KEPGCSWIE   ++H F   DSSHPQ +K++ +L+ L +++   GY PDT+ VL ++E +
Sbjct: 667 KEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEED 726

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
           +KE  +  HSEKLAI FG+++ + G  IR+ KNLR+C DCH   K  +K+ ++ I++RD 
Sbjct: 727 EKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDV 786

Query: 627 IRYHHFQDGNCSCGDYW 643
            R+H F++G CSCGDYW
Sbjct: 787 RRFHRFKNGTCSCGDYW 803



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/414 (30%), Positives = 219/414 (52%), Gaps = 16/414 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV-NILLNMHVKFSLLEE 127
           G++ D+  +  L+K       +E  K +H HV   G+  ++  V N L+N++ K      
Sbjct: 5   GIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA 64

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC-- 185
              +FD++ ERN VSW ++IS+ C  +  + ALE    ML E V P+ FT  +V+ AC  
Sbjct: 65  VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN 124

Query: 186 ----DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
               + L++ +Q+H   ++ G E + F+ + L+ +Y KLG+L +++ +      RDLV W
Sbjct: 125 LPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTW 183

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N+++    QN  + EAL   + M   G   D+ T++SVL AC+ L +L  G ++H + LK
Sbjct: 184 NTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALK 243

Query: 302 ---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
               D +  + +AL+DMYC C  +     VF  M  + +  W+ MI+G +QN + +EAL 
Sbjct: 244 NGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALL 303

Query: 359 LFESMKVSR-IKPNYITIVGVLFACSHAG-FVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           LF  M+ S  +  N  T+ GV+ AC  +G F      H   +K+  G+D  R   + ++D
Sbjct: 304 LFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKR--GLDRDRFVQNTLMD 361

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
           +  R GK+  A+++  +M  + D VTW  ++       + + A+    K+ NL+
Sbjct: 362 MYSRLGKIDIAMRIFGKME-DRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLE 414


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/514 (41%), Positives = 329/514 (64%), Gaps = 6/514 (1%)

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIIL 191
           M  R++ SWT++I+ Y    M D+AL LL+ MLR   +PN FT++++L+A     S  I 
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
            Q+H   +K  +  DV+V SAL+D+YA+ G +  A  VF+++ +++ V WN++I GFA+ 
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 120

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILN 309
            D +  L ++  M+R GF A   T +SV  A  G+  LE G  VH H++K    L   + 
Sbjct: 121 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVG 180

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
           N +LDMY K GS+ DA  VF  + +KD+++W++M++  AQ G  +EA+  FE M+   + 
Sbjct: 181 NTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVH 240

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
            N IT + +L ACSH G V++G  +F  MK+ + ++P  +HY  ++DLLGRAG L +A+ 
Sbjct: 241 LNQITFLSILTACSHGGLVKEGKQYFDMMKE-HNLEPEIDHYVTVVDLLGRAGLLNDALV 299

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489
            I +MP +P A  W ALLG+C++H+N  +   AA  +  LDP D G  +LL NIYA++ +
Sbjct: 300 FIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQ 359

Query: 490 WDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549
           WD  A VRK M+A G+ KEP CSW+E+   +H F   D +HP+ ++I K  + +  ++  
Sbjct: 360 WDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRK 419

Query: 550 VGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
            GY P+T+YVL  ++ ++++  +QYHSEK+A+ F L+++  G TIRI KN+RICGDCH+ 
Sbjct: 420 AGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSA 479

Query: 610 AKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +  +K+  + IV+RD  R+HHF  G+CSCGDYW
Sbjct: 480 FRYISKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 154/303 (50%), Gaps = 11/303 (3%)

Query: 52  QRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Q D+P  A+  +  M     + +  T+A L+K   A  +    + +H   +   +  + +
Sbjct: 18  QNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVY 77

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF--MLR 168
           + + LL+M+ +   ++ A  +FDQ+  +N VSW  +I+ +  A+  D    LL+F  M R
Sbjct: 78  VGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGF--ARKGDGETTLLMFAEMQR 135

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
            G     FTYS+V  A   +  L Q   +H  +IK G     FV + ++D+YAK G + +
Sbjct: 136 NGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMID 195

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VF+ +  +DLV WNS++  FAQ     EA+  ++ M++ G   +Q T  S+L AC+ 
Sbjct: 196 ARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSH 255

Query: 286 LALLELGTQVHVHVLKYDHDLILNN--ALLDMYCKCGSLEDAMSVFSRMIQKDVIS-WST 342
             L++ G Q    + +++ +  +++   ++D+  + G L DA+    +M  K   + W  
Sbjct: 256 GGLVKEGKQYFDMMKEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGA 315

Query: 343 MIS 345
           ++ 
Sbjct: 316 LLG 318



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 120/264 (45%), Gaps = 35/264 (13%)

Query: 22  SLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELI 81
           ++ +   + S N ++ N+  L+  F R   + D    +     MQ +G  A   TY+ + 
Sbjct: 95  AIAVFDQLESKNGVSWNA--LIAGFAR---KGDGETTLLMFAEMQRNGFEATHFTYSSVF 149

Query: 82  KCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVV 141
                  A+E+ K VH H++  G     F+ N +L+M+ K   + +A+ +FD + ++++V
Sbjct: 150 SAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLV 209

Query: 142 SWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKV 201
           +W +M++A+    +  +A+     M + GV  N  T+ ++L AC         H G++K 
Sbjct: 210 TWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACS--------HGGLVKE 261

Query: 202 G-----------FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL-VVWNSIIGGFA 249
           G            E ++     ++D+  + G L +A     +MP +    VW +++G   
Sbjct: 262 GKQYFDMMKEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLG--- 318

Query: 250 QNSDVDEALNLYKRMKRAGFAADQ 273
                  +  ++K  K   FAAD 
Sbjct: 319 -------SCRMHKNAKIGQFAADH 335


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/593 (37%), Positives = 349/593 (58%), Gaps = 6/593 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A+     M     + ++VT + ++        +  AK VH   + GGFE   F+   L+
Sbjct: 105 EAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALV 164

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ KF  +  A+ LF+ M ERNVV+W  ++S Y D   +++A++L   M R+G+  + +
Sbjct: 165 DMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFY 224

Query: 177 TYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T  +++ A  S+  L+    +H  II+ G+E+D  +++AL+DIY     + +A  VF+EM
Sbjct: 225 TIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEM 284

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELG 292
             +D+  W  ++ GF+     D A+  + +M        D   L  +L +C+    L+ G
Sbjct: 285 SVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQG 344

Query: 293 TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
            +VH   +K  + +++ + +A++DMY  CG+LEDA   F  M +KDV+ W+ MI+G   N
Sbjct: 345 RRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMN 404

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
           GY  +A+ LF  MK S + P+  T V VL+ACSHAG V +G   F  M K   + P  +H
Sbjct: 405 GYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQH 464

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
           Y+C+ID+LGRAG+L  A   I+ MP++PD   +  LLGAC++H N  L    ++KI  ++
Sbjct: 465 YACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEME 524

Query: 471 PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSH 530
           P D G Y+LLSN+YA +  W+ V   R ++R++ + K+PG S IE+N++I+ F   +  H
Sbjct: 525 PNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDH 584

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           PQ  KI   LK LI K+   GY P+TN +LQD+  + K+D + +HSEK+AI FGLM    
Sbjct: 585 PQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKP 644

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
              IRI KNLR C DCHT +K  +K+  + +VI+D  R+H FQDG CSC DYW
Sbjct: 645 ETIIRITKNLRTCDDCHTASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 129/404 (31%), Positives = 224/404 (55%), Gaps = 19/404 (4%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  +++ G    TFL N L+N +V   LL +A+ +F   P +NVVSWT +IS       
Sbjct: 43  IHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDC 102

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSA 212
             +A+++   M+    +PN  T S+VL A  +L ++R    +HC  ++ GFE +VFV +A
Sbjct: 103 FVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETA 162

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           L+D+Y+K G +  A  +F  M  R++V WN+I+ G++ +   +EA++L+  M+R G   D
Sbjct: 163 LVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVD 222

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
             T+ S++ A   +  L++GT +H  +++  Y++D  +  AL+D+Y     ++DA  VFS
Sbjct: 223 FYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFS 282

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVE 389
            M  KDV +W+ M++G +   +   A+K F  M  +  +K + I ++G+L +CSH+G ++
Sbjct: 283 EMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQ 342

Query: 390 DGWN-HFKSMKKFYG--IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            G   H  ++K  +   I  G    S +ID+    G L++A +  + M  E D V W A+
Sbjct: 343 QGRRVHALAIKTCFANNIFVG----SAVIDMYANCGNLEDAKRFFYGMG-EKDVVCWNAM 397

Query: 447 LGACKVH-RNTD-LAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
           +    ++   TD + +    K   LDP D  T++  S +YA S 
Sbjct: 398 IAGNGMNGYGTDAIDLFLQMKGSGLDP-DESTFV--SVLYACSH 438



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 156/294 (53%), Gaps = 4/294 (1%)

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           ++++LR    L  L+Q+H  II  G   + F+ ++L++ Y   G L +A+ +F+  P ++
Sbjct: 27  HASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKN 86

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           +V W  +I G A+N    EA+++++ M    F  +  T++SVL A   L L+ +   VH 
Sbjct: 87  VVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHC 146

Query: 298 HVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
             ++  ++ ++ +  AL+DMY K G +  A  +F  M +++V++W+ ++SG + +G+S+E
Sbjct: 147 FWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEE 206

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           A+ LF  M+   +  ++ TI+ ++ A    G ++ G      + +  G +  +   + ++
Sbjct: 207 AIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIR-TGYENDKHIKTALM 265

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
           D+      + +A ++  EM  + D   W  +L      R+ D AI    K+L +
Sbjct: 266 DIYVSHNCVDDAHRVFSEMSVK-DVAAWTLMLTGFSSGRHWDRAIKHFNKMLGI 318


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/598 (35%), Positives = 354/598 (59%), Gaps = 8/598 (1%)

Query: 50   CYQRDLP--RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
            CY +D      +K +  +   G   + VT+A  +  C     + E+K+VH  ++  GF  
Sbjct: 473  CYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHD 532

Query: 108  ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
               + N L+ M+ K  ++ EA+ +   MP+ + V+W  +I  + + +  ++A++    + 
Sbjct: 533  FLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIR 592

Query: 168  REGVRPNMFTYSAVLRAC----DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
             +G+  N  T  +VL AC    D L     +H  I+  GFESD +V+++LI +YAK G+L
Sbjct: 593  EKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDL 652

Query: 224  RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
             ++  +F+ +  +  + WN+++   A +   +EAL ++  M+  G   DQ + +  L A 
Sbjct: 653  NSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAAT 712

Query: 284  TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
              LA+LE G Q+H  V+K  ++ DL + NA +DMY KCG + D + +  + I +  +SW+
Sbjct: 713  ANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWN 772

Query: 342  TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
             +IS  A++G  Q+A + F  M     KP+++T V +L AC+H G V++G  ++ SM + 
Sbjct: 773  ILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTRE 832

Query: 402  YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
            +G+ PG EH  C+IDLLGR+G+L  A   I EMP  P+ + WR+LL AC++H N +LA  
Sbjct: 833  FGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARK 892

Query: 462  AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIH 521
             A+ +L LDP D   Y+L SN+ A S KW++V  +RK M +  I K+P CSW+++  ++H
Sbjct: 893  TAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVH 952

Query: 522  AFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAI 581
            +F + +  HPQ  +I+  L  L++     GY PDT++ L D++ EQKE ++  HSE+LA+
Sbjct: 953  SFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLAL 1012

Query: 582  VFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
             FGL++  +  T+RI KNLR+CGDCH+  K  + +  + IV+RDP R+HHF  G CSC
Sbjct: 1013 AFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSC 1070



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 200/366 (54%), Gaps = 9/366 (2%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
            K +H   + G      F  N L+NM+ KF  +E A+ +FD+M  RN  SW+TM+S Y  
Sbjct: 113 GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 172

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR----QLHCGIIKVGFESDVF 208
             + ++A+ L   M   GV PN F  ++++ AC     +     Q+H  ++K G   DV+
Sbjct: 173 VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 232

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           V +AL+  Y  +G + NA+ +F EMP  ++V W S++ G++ + +  E LN+Y+RM++ G
Sbjct: 233 VGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG 292

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAM 326
            + +Q+T  +V  +C  L    LG QV  H+++Y  +  + + N+L+ M+    S+E+A 
Sbjct: 293 VSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEAC 352

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            VF  M + D+ISW+ MIS  A +G  +E+L+ F  M+    + N  T+  +L  CS   
Sbjct: 353 YVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVD 412

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            ++ G      + K  G+D      + ++ L   AG+ ++A +L+ +   E D ++W ++
Sbjct: 413 NLKWGRGIHGLVVKL-GLDSNVCICNTLLTLYSEAGRSEDA-ELVFQAMTERDLISWNSM 470

Query: 447 LGACKV 452
           + AC V
Sbjct: 471 M-ACYV 475



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 209/393 (53%), Gaps = 11/393 (2%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC-DAK 154
           +H  V+  G +    + N LL ++ +    E+A+++F  M ER+++SW +M++ Y  D K
Sbjct: 420 IHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGK 479

Query: 155 MNDKALELLIFMLREGVRPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRS 211
             D  L++L  +L+ G   N  T+++ L AC +   LI  + +H  II  GF   + V +
Sbjct: 480 CLD-GLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGN 538

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
           AL+ +Y KLG +  A+ V   MP  D V WN++IGG A+N + +EA+  YK ++  G  A
Sbjct: 539 ALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPA 598

Query: 272 DQSTLTSVLRACTGL-ALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSV 328
           +  T+ SVL AC+    LL+ G  +H H++   ++ D  + N+L+ MY KCG L  +  +
Sbjct: 599 NYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYI 658

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           F  +  K  I+W+ M++  A +G  +EALK+F  M+   +  +  +  G L A ++   +
Sbjct: 659 FDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVL 718

Query: 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
           E+G      + K  G +      +  +D+ G+ G++ + +K++ + P     ++W  L+ 
Sbjct: 719 EEGQQLHGLVIKL-GFESDLHVTNAAMDMYGKCGEMHDVLKMLPQ-PINRSRLSWNILIS 776

Query: 449 ACKVHRNTDLAICAAKKILNLDPQ-DPGTYILL 480
           A   H     A     ++L L P+ D  T++ L
Sbjct: 777 AFARHGCFQKARETFHEMLKLGPKPDHVTFVSL 809



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 223/443 (50%), Gaps = 34/443 (7%)

Query: 69  GVRADSVTYAELIKCC-LARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           GV  +    A LI  C  + +  +E   VH  V+  G   + ++   L++ +    L+  
Sbjct: 190 GVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYN 249

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           AQ LF++MP+ NVVSWT+++  Y D+    + L +   M +EGV  N  T++ V  +C  
Sbjct: 250 AQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGL 309

Query: 188 L---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L   ++  Q+   II+ GFE  V V ++LI +++    +  A  VF+ M   D++ WN++
Sbjct: 310 LEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAM 369

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           I  +A +    E+L  +  M+      + +TL+S+L  C+ +  L+ G  +H  V+K   
Sbjct: 370 ISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGL 429

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF-E 361
           D ++ + N LL +Y + G  EDA  VF  M ++D+ISW++M++   Q+G   + LK+  E
Sbjct: 430 DSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAE 489

Query: 362 SMKVSRIKPNYITIVGVLFACS-----------HAGFVEDGWNHFKSMKKFYGIDPGREH 410
            +++ ++  N++T    L ACS           HA  +  G++ F  +            
Sbjct: 490 LLQMGKVM-NHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVG----------- 537

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
            + ++ + G+ G + EA K++  MP +PD VTW AL+G    +   + A+ A K I   +
Sbjct: 538 -NALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGGHAENEEPNEAVKAYKLI--RE 593

Query: 471 PQDPGTYILLSNIYANSQKWDEV 493
              P  YI + ++       D++
Sbjct: 594 KGIPANYITMVSVLGACSAPDDL 616



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/324 (32%), Positives = 167/324 (51%), Gaps = 5/324 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  GV  +  T+A +   C           V  H++  GFE    + N L++M   FS 
Sbjct: 288 MRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSS 347

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +EEA  +FD M E +++SW  MISAY    +  ++L    +M       N  T S++L  
Sbjct: 348 VEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSV 407

Query: 185 C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C   D+L   R +H  ++K+G +S+V + + L+ +Y++ G   +AE VF  M  RDL+ W
Sbjct: 408 CSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISW 467

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           NS++  + Q+    + L +   + + G   +  T  S L AC+    L     VH  ++ 
Sbjct: 468 NSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIV 527

Query: 302 YD-HD-LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
              HD LI+ NAL+ MY K G + +A  V   M Q D ++W+ +I G A+N    EA+K 
Sbjct: 528 AGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKA 587

Query: 360 FESMKVSRIKPNYITIVGVLFACS 383
           ++ ++   I  NYIT+V VL ACS
Sbjct: 588 YKLIREKGIPANYITMVSVLGACS 611


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/592 (38%), Positives = 353/592 (59%), Gaps = 6/592 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M+  G+  D+ TYA ++  C +   + + K +H H+L         + N L+ 
Sbjct: 154 ALDTYWKMRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALIT 213

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L++++ LF  M  ++VVSW  MI+AY     +  A  L   M   G  P+++T
Sbjct: 214 MYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYT 273

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +S++L AC S   L   R LH  I   GF+ D  +++ LI ++ + G L +A   F  + 
Sbjct: 274 FSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIE 333

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            ++L  WN+++  +AQ     +AL LYK M   GF  D+ T +SV+ +C  L  L  G  
Sbjct: 334 KKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKF 393

Query: 295 VH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H       ++ D+IL  AL++MY KCGSL DA   F  +  KDV+SWS MI+  AQ+G+
Sbjct: 394 IHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGH 453

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
           ++EAL+L   M +  I  N +T   VL ACSH G + +G ++F  + + +GI+   E+  
Sbjct: 454 AEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTV 513

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
             IDLLGRAG L+EA  ++H MP++   V    LLG CKVH +        K+I+ L+P+
Sbjct: 514 GFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKALTKRIVALEPE 573

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           +PG+Y+LL+N+YA + +WD+VA++R+ MR +G+ ++ GCS IE   +I+ F+V D+S+P+
Sbjct: 574 NPGSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPR 633

Query: 533 IDKINKHLKHLIQKLV-GVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
             +I   L+ L  ++    GY PDT  V  D+  ++KE+ +++HSEK+A+ FGL++   G
Sbjct: 634 NLEIRAELERLYSRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLITSPPG 693

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            T+RI KNLR+C DCHT  KL +K+  + I++RD  R+HHF+ G CSCGDYW
Sbjct: 694 STLRIIKNLRVCSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICSCGDYW 745



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/419 (28%), Positives = 213/419 (50%), Gaps = 10/419 (2%)

Query: 50  CYQRD--LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY ++     A++    M    +  D+ T + ++  C     VEE ++V       GFE 
Sbjct: 42  CYVQNAMYQEALEVYKEMVRKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEK 101

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPE-RNVVSWTTMISAYCDAKMNDKALELLIFM 166
           +  +   L+++  K   LEEA+ +F  M   R+++S T MI AY     ND AL+    M
Sbjct: 102 DVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKM 161

Query: 167 LREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
             +G+ P+ FTY+A+L AC   D L+  + +H  I++     ++ VR+ALI +YAK G L
Sbjct: 162 RSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSL 221

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           ++++ +F  M  +D+V WN++I  +       +A +L+ RM   G   D  T +S+L AC
Sbjct: 222 KDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGAC 281

Query: 284 TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
                LE G  +HV +    +D D  + N L+ M+ +CGSLE A   F  + +K++ +W+
Sbjct: 282 ASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWN 341

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
           TM++  AQ    ++AL L+++M +    P+  T   V+ +C+  G + +G          
Sbjct: 342 TMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREG-KFIHECSTS 400

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            G +      + ++++  + G L +A K    +    D V+W A++ A   H + + A+
Sbjct: 401 CGFEKDVILGTALVNMYAKCGSLADAKKSFDGIS-NKDVVSWSAMIAASAQHGHAEEAL 458



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 188/349 (53%), Gaps = 10/349 (2%)

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           +TFL N+++ M+ K    E+A+ +FD++ +RN  SW+ ++  Y    M  +ALE+   M+
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 168 REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           R+ +  + +T S+VL AC  L+ +   R +     ++GFE DV V ++LI ++AK G L 
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120

Query: 225 NAECVFNEMPT-RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
            AE VF  M   RD++   ++IG + ++   D AL+ Y +M+  G   D  T  ++L AC
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGAC 180

Query: 284 TGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
           +    L  G  +H H+L+  H  ++ + NAL+ MY KCGSL+D+ S+F  M  KDV+SW+
Sbjct: 181 SSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWN 240

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKK 400
            MI+     G+ ++A  LF  M      P+  T   +L AC+    +EDG   H +   +
Sbjct: 241 AMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITAR 300

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
             G D      + +I +  R G L+ A +  + +  + +   W  +L A
Sbjct: 301 --GFDRDFAMQNNLISMFTRCGSLESARRYFYSIE-KKELGAWNTMLAA 346



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 1/156 (0%)

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           D  L N ++ MY KC S EDA  VF R+ Q++  SWS ++    QN   QEAL++++ M 
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
              I  +  T+  VL AC+    VE+G    +  ++  G +      + +I L  + G L
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEEL-GFEKDVVVATSLIHLFAKCGCL 119

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           +EA  +   M    D ++  A++GA   H   DLA+
Sbjct: 120 EEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLAL 155


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/594 (39%), Positives = 351/594 (59%), Gaps = 41/594 (6%)

Query: 90  VEEAKLVHNH-VLSGGFEPETFLVNILLNMHVK--FSLLEEAQVLFDQMPERNVVSWTTM 146
           ++E K +H   V++G       L   + ++ V+   +LL   Q+L DQ  +  + +  +M
Sbjct: 22  LKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQIL-DQCAKPTLFALNSM 80

Query: 147 ISAYCDAKMNDKALELL--IFMLREGVRPNMFTYSAVLRAC--DSLIILRQLHCGIIKVG 202
           I AY  +    K+ +    I    + + P+ +T++ ++R C   +      +H  +IK G
Sbjct: 81  IRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQSACEAGPAVHGALIKHG 140

Query: 203 FESDVFVRSALIDIYA-------------------------------KLGELRNAECVFN 231
           FE D  V S LI +YA                               K G++  A  +F+
Sbjct: 141 FEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFD 200

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
            MP RD V WN++I G+AQ     EALNL+K M+  G   ++ ++ SV+ ACT L  L+ 
Sbjct: 201 SMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQ 260

Query: 292 GTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G   H ++ K    + +N   AL+DMY KCG+++ A+ VF  M +K+V +WST I GLA 
Sbjct: 261 GKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAM 320

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           NGY Q+ L+LF  MK   I PN IT + VL  CS  GFV++G +HF SMK+ +GI+P  E
Sbjct: 321 NGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLE 380

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
           HY CM+DL GRAG+L+EA+  I+ MP +P A  W ALL AC++++N +L   A++K++ +
Sbjct: 381 HYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEV 440

Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
           + ++ G Y+ LSNIYA++  WD V+ VR++M+A GI+K PGCS +EVN ++H F   D S
Sbjct: 441 EGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFFSGDKS 500

Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
           HP  D I      + ++L   GY   TN VL D+E E+KED++  HSEK+AI FGL SL 
Sbjct: 501 HPSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKHSEKMAIAFGLFSLK 560

Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +G  IRI KNLRIC DCH  +K+ +K+  + I++RD  R+HHF+DG CSC D+W
Sbjct: 561 EGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCKDFW 614



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 172/382 (45%), Gaps = 51/382 (13%)

Query: 27  PPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLA 86
           P + + N++ R  S  L     F +   + ++   M          D+ T+  L++ C A
Sbjct: 72  PTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVM--------SPDNYTFNFLVRTC-A 122

Query: 87  RHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE------------------- 127
           + A E    VH  ++  GFE +  + + L+ M+ + S L                     
Sbjct: 123 QSACEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTM 182

Query: 128 ------------AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
                       A+ LFD MP+R+ VSW  MI+ Y     + +AL L   M  +GV+ N 
Sbjct: 183 VSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNE 242

Query: 176 FTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
            +  +V+ AC  L  L Q    H  I K   +  V + +AL+D+Y K G +  A  VF E
Sbjct: 243 VSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWE 302

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           M  +++  W++ IGG A N    + L L+  MK  G A ++ T  SVL+ C+ +  ++ G
Sbjct: 303 MNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEG 362

Query: 293 TQVHVHVLKYDHD----LILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGL 347
            + H   +K DH     L     ++D+Y + G LE+A++  + M ++    +W  +++  
Sbjct: 363 -RSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLN-- 419

Query: 348 AQNGYSQEALKLFESMKVSRIK 369
           A   Y    L  F S K+  ++
Sbjct: 420 ACRMYKNMELGEFASRKLIEVE 441


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/617 (36%), Positives = 362/617 (58%), Gaps = 17/617 (2%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLAR--HAVEEAKLVH 97
           +SL+  + R     ++ R +  M     HG+  +S      +K C +    ++E  K++H
Sbjct: 190 NSLIAGYVRIGSNDEMLRLLVKMLR---HGLNLNSYALGSALKACGSNFSSSIECGKMLH 246

Query: 98  NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK--- 154
              +  G + +  +   LL+ + K   LE+A  +F  MP+ NVV +  MI+ +   +   
Sbjct: 247 GCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMA 306

Query: 155 --MNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFV 209
               ++A+ L   M   G++P+ FT+S++L+AC ++      +Q+H  I K   +SD F+
Sbjct: 307 DEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFI 366

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
            +AL+++Y+  G + +    F+  P  D+V W S+I G  QN   +  L L+  +  +G 
Sbjct: 367 GNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGR 426

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMS 327
             D+ T++ +L AC  LA ++ G Q+H + +K    +  I+ N+ + MY KCG ++ A  
Sbjct: 427 KPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANM 486

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
            F      D++SWS MIS  AQ+G ++EA+ LFE MK S I PN+IT +GVL ACSH G 
Sbjct: 487 TFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGL 546

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           VE+G  +F+ MKK +GI P  +H +C++DLLGRAG+L EA   I +  +E D V WR+LL
Sbjct: 547 VEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLL 606

Query: 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507
            AC+VH+ TD     A++++ L+P+   +Y+LL NIY ++       E+R  M+ RG+ K
Sbjct: 607 SACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKK 666

Query: 508 EPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQ 567
           EPG SWIEV   +H+F   D SHP    I   L+ +++++  + Y  D   V    E + 
Sbjct: 667 EPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI-DEKLVSDASEPKH 725

Query: 568 KEDS-IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
           K++S + YHSEKLA+ FG++SL +   +R+ KNLR C  CH   KL +++EN+ I++RDP
Sbjct: 726 KDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDP 785

Query: 627 IRYHHFQDGNCSCGDYW 643
           IR+H F+DG+CSCGDYW
Sbjct: 786 IRFHRFRDGSCSCGDYW 802



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/391 (32%), Positives = 197/391 (50%), Gaps = 14/391 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+  DSVTY +L++C     ++   KL H H++   F+P  FL+N LL M+ K    + A
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVA 73

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + LFD+MP+RNVVSW ++IS Y       + + L        +R + FT+S  L  C   
Sbjct: 74  KKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRT 133

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
           + L   R +H  I   G    V + ++LID+Y K G +  A  VF      D V WNS+I
Sbjct: 134 LDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLI 193

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG--LALLELGTQVHVHVLK-- 301
            G+ +    DE L L  +M R G   +   L S L+AC     + +E G  +H   +K  
Sbjct: 194 AGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLG 253

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ-----NGYSQEA 356
            D D+++  ALLD Y K G LEDA  +F  M   +V+ ++ MI+G  Q     + ++ EA
Sbjct: 254 LDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEA 313

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           + LF  M+   +KP+  T   +L ACS     E G      + K Y +       + +++
Sbjct: 314 MYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFK-YNLQSDEFIGNALVE 372

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           L   +G +++ +K  H  P + D V+W +L+
Sbjct: 373 LYSLSGSIEDGLKCFHSTP-KLDVVSWTSLI 402


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/592 (36%), Positives = 348/592 (58%), Gaps = 6/592 (1%)

Query: 58   AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            A+  + +M   G   + VT+   +  C      E+ +++H  V+  G      + N L++
Sbjct: 436  ALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVS 495

Query: 118  MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            M+ K   + E++ +  QMP R+VV+W  +I  Y + +  DKAL     M  EGV  N  T
Sbjct: 496  MYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYIT 555

Query: 178  YSAVLRAC----DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
              +VL AC    D L   + LH  I+  GFESD  V+++LI +YAK G+L +++ +FN +
Sbjct: 556  VVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL 615

Query: 234  PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
              R+++ WN+++   A +   +E L L  +M+  G + DQ + +  L A   LA+LE G 
Sbjct: 616  DNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQ 675

Query: 294  QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
            Q+H   +K  ++HD  + NA  DMY KCG + + + +    + + + SW+ +IS L ++G
Sbjct: 676  QLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHG 735

Query: 352  YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
            Y +E    F  M    IKP ++T V +L ACSH G V+ G  ++  + + +G++P  EH 
Sbjct: 736  YFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHC 795

Query: 412  SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
             C+IDLLGR+G+L EA   I +MP +P+ + WR+LL +CK+H N D    AA+ +  L+P
Sbjct: 796  ICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEP 855

Query: 472  QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
            +D   Y+L SN++A + +W++V  VRK M  + I K+  CSW+++  ++ +F + D +HP
Sbjct: 856  EDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHP 915

Query: 532  QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
            Q  +I   L+ + + +   GY  DT+  LQD + EQKE ++  HSE+LA+ + LMS  +G
Sbjct: 916  QTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEG 975

Query: 592  KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             T+RI KNLRIC DCH+  K  +++  + IV+RD  R+HHF+ G CSC DYW
Sbjct: 976  STVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 1027



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 199/394 (50%), Gaps = 39/394 (9%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  V+  GF+    + N LL M+       EA ++F QMP ++++SW ++++++ +   
Sbjct: 373 IHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGR 432

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSA 212
           +  AL LL  M+  G   N  T+++ L AC   D     R LH  ++  G   +  + +A
Sbjct: 433 SLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNA 492

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           L+ +Y K+GE+  +  V  +MP RD+V WN++IGG+A++ D D+AL  ++ M+  G +++
Sbjct: 493 LVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSN 552

Query: 273 QSTLTSVLRACTGLA-LLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVF 329
             T+ SVL AC     LLE G  +H +++   ++ D  + N+L+ MY KCG L  +  +F
Sbjct: 553 YITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLF 612

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
           + +  +++I+W+ M++  A +G+ +E LKL   M+   +  +  +    L A +    +E
Sbjct: 613 NGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLE 672

Query: 390 D-----------GWNH----FKSMKKFY---------------GIDPGREHYSCMIDLLG 419
           +           G+ H    F +    Y                ++     ++ +I  LG
Sbjct: 673 EGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALG 732

Query: 420 RAGKLQEAVKLIH---EMPYEPDAVTWRALLGAC 450
           R G  +E     H   EM  +P  VT+ +LL AC
Sbjct: 733 RHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTAC 766



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 180/361 (49%), Gaps = 6/361 (1%)

Query: 98  NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND 157
             V+  G E +  + N L++M      ++ A  +FDQM ER+ +SW ++ +AY      +
Sbjct: 274 GQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIE 333

Query: 158 KALELLIFMLREGVRPNMFTYS---AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALI 214
           ++  +   M R     N  T S   +VL   D     R +H  ++K+GF+S V V + L+
Sbjct: 334 ESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLL 393

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
            +YA  G    A  VF +MPT+DL+ WNS++  F  +    +AL L   M  +G + +  
Sbjct: 394 RMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYV 453

Query: 275 TLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           T TS L AC      E G  +H  V V    ++ I+ NAL+ MY K G + ++  V  +M
Sbjct: 454 TFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQM 513

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
            ++DV++W+ +I G A++    +AL  F++M+V  +  NYIT+V VL AC   G + +  
Sbjct: 514 PRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERG 573

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
               +     G +      + +I +  + G L  +  L + +    + +TW A+L A   
Sbjct: 574 KPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAH 632

Query: 453 H 453
           H
Sbjct: 633 H 633



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 194/397 (48%), Gaps = 27/397 (6%)

Query: 69  GVRADSVTYAELIKCCLARHAV-EEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           G++  S   A L+  C    ++  E   VH  V   G   + ++   +L+++  + L+  
Sbjct: 168 GIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSC 227

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           ++ +F++MP+RNVVSWT+++  Y D    ++ +++                         
Sbjct: 228 SRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIY----------------------KD 265

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
             + RQ+   ++K G ES + V ++LI +   +G +  A  +F++M  RD + WNSI   
Sbjct: 266 ESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAA 325

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHD 305
           +AQN  ++E+  ++  M+R     + +T++++L     +   + G  +H  V+K  +D  
Sbjct: 326 YAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSV 385

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           + + N LL MY   G   +A  VF +M  KD+ISW+++++    +G S +AL L  SM  
Sbjct: 386 VCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMIS 445

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
           S    NY+T    L AC    F E G      +    G+   +   + ++ + G+ G++ 
Sbjct: 446 SGKSVNYVTFTSALAACFTPDFFEKG-RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMS 504

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           E+ +++ +MP   D V W AL+G      + D A+ A
Sbjct: 505 ESRRVLLQMPRR-DVVAWNALIGGYAEDEDPDKALAA 540



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 184/369 (49%), Gaps = 45/369 (12%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
            + VH   + G         N L+NM+ KF  ++ A+ LFD MP RN VSW TM+S    
Sbjct: 91  GRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVR 150

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACD-SLIILR---QLHCGIIKVGFESDVF 208
             +  + +E    M   G++P+ F  ++++ AC  S  + R   Q+H  + K G  SDV+
Sbjct: 151 VGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVY 210

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           V +A++ +Y   G +  +  VF EMP R++V W S++ G++   + +E +++YK      
Sbjct: 211 VSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYK------ 264

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAM 326
              D+S                LG Q+   V+K   +  L + N+L+ M    G+++ A 
Sbjct: 265 ---DES----------------LGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYAN 305

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            +F +M ++D ISW+++ +  AQNG+ +E+ ++F  M+    + N  T+  +L    H  
Sbjct: 306 YIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHV- 364

Query: 387 FVEDGWNHFKSMKKFYG--IDPGREHYSCMIDLLGR----AGKLQEAVKLIHEMPYEPDA 440
                 +H K  +  +G  +  G +   C+ + L R    AG+  EA  +  +MP + D 
Sbjct: 365 ------DHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK-DL 417

Query: 441 VTWRALLGA 449
           ++W +L+ +
Sbjct: 418 ISWNSLMAS 426


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/593 (36%), Positives = 357/593 (60%), Gaps = 7/593 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A++  H M+  G + D V    +I              +H + +  G + +  + N L+
Sbjct: 366 EALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLV 425

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ KF  ++    +FD+MP+++VVSWTT+I+ +     + +ALEL   +  EG+  ++ 
Sbjct: 426 DMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVM 485

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
             S++L AC  L ++   +++H  II+ G  SD+ +++ ++D+Y + G +  A  +F  +
Sbjct: 486 MISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVLQNGIVDVYGECGNVDYAARMFELI 544

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +D+V W S+I  +  N   +EAL L+  MK  G   D  +L S+L A   L+ L+ G 
Sbjct: 545 EFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGK 604

Query: 294 QVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           ++H  +++    L   L + L+DMY +CG+LE + +VF+ +  KD++ W++MI+    +G
Sbjct: 605 EIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHG 664

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
             + A+ LF  M+   I P++I  V VL+ACSH+G + +G    +SMK  Y ++P  EHY
Sbjct: 665 CGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHY 724

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +C++DLLGRA  L+EA + +  M  EP A  W ALLGAC++H N +L   AA+K+L +DP
Sbjct: 725 ACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDP 784

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
           ++PG Y+L+SN+Y+  ++W +V  VR  M+A G+ K PGCSWIEV  ++H F   D SHP
Sbjct: 785 ENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHP 844

Query: 532 QIDKINKHLKHLIQKLVGV-GYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           Q  +I   L  + +KL    GY   T +VL + + E+K   +  HSE+LAI +G+++  +
Sbjct: 845 QSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTPE 904

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           G ++RI KNLR+CGDCH F KL +K   + +V+RD  R+HHF+ G CSCGD W
Sbjct: 905 GASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 128/400 (32%), Positives = 212/400 (53%), Gaps = 20/400 (5%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  G+  D+ T+  ++K C           VH   +  G+    F+ N ++ M+ K + 
Sbjct: 171 MRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCND 230

Query: 125 LEEAQVLFDQMPER-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
           L  A+ LFD+MPE+ +VVSW +MISAY     + +AL L   M +  + PN +T+ A L+
Sbjct: 231 LNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQ 290

Query: 184 ACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           AC+    ++Q   +H  ++K  +  +VFV +ALI +YA+ G++  A  +F  M   D + 
Sbjct: 291 ACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTIS 350

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           WNS++ GF QN    EAL  Y  M+ AG   D   + S++ A         G Q+H + +
Sbjct: 351 WNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAM 410

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K   D DL + N+L+DMY K  S++    +F +M  KDV+SW+T+I+G AQNG    AL+
Sbjct: 411 KNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALE 470

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF--YGIDPGREHY---SC 413
           LF  +++  I  + + I  +L ACS       G     S+K+   Y I  G       + 
Sbjct: 471 LFREVQLEGIDLDVMMISSILLACS-------GLKLISSVKEIHSYIIRKGLSDLVLQNG 523

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           ++D+ G  G +  A ++   + ++ D V+W +++ +C VH
Sbjct: 524 IVDVYGECGNVDYAARMFELIEFK-DVVSWTSMI-SCYVH 561



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 203/382 (53%), Gaps = 11/382 (2%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVL-SGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ 134
            Y+ +++ C ++ A+ E + VH H++ S       FL   L+ M+ K   L +A+ LFD 
Sbjct: 80  AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 139

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR-- 192
           MP + + +W  MI AY        +LEL   M   G+  +  T+  +L+AC  L   R  
Sbjct: 140 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYG 199

Query: 193 -QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQ 250
            ++H   IK G+ S VFV ++++ +Y K  +L  A  +F+ MP + D+V WNS+I  ++ 
Sbjct: 200 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 259

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
           N    EAL L+  M++A  A +  T  + L+AC   + ++ G  +H  VLK  Y  ++ +
Sbjct: 260 NGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFV 319

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            NAL+ MY + G + +A ++F  M   D ISW++M+SG  QNG   EAL+ +  M+ +  
Sbjct: 320 ANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQ 379

Query: 369 KPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           KP+ + ++ ++ A + +G    G   H  +MK   G+D   +  + ++D+  +   ++  
Sbjct: 380 KPDLVAVISIIAASARSGNTLHGMQIHAYAMKN--GLDSDLQVGNSLVDMYAKFCSMKYM 437

Query: 428 VKLIHEMPYEPDAVTWRALLGA 449
             +  +MP + D V+W  ++  
Sbjct: 438 DCIFDKMP-DKDVVSWTTIIAG 458


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/593 (38%), Positives = 353/593 (59%), Gaps = 36/593 (6%)

Query: 86  ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTT 145
           +RH + +   +H  ++  G   + F+V  LL    K   ++ A  +F      NV  +T 
Sbjct: 59  SRH-INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTA 117

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVG 202
           +I  +  +    +A++L   ML E + P+ +  +++L+AC S + L   R++H   +K+G
Sbjct: 118 LIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLG 177

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPT--------------------------- 235
           F S+  VR  ++++Y K GEL +A  VF EMP                            
Sbjct: 178 FSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSR 237

Query: 236 ---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
              +D V W ++I GF +N + + AL  ++ M+      ++ T+  VL AC+ L  LE+G
Sbjct: 238 VRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIG 297

Query: 293 TQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
             VH ++ K+  + +L + NAL++MY +CGS+++A +VF  M  +DVI+++TMISGL+ N
Sbjct: 298 RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMN 357

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
           G S++A++LF  M   R++P  +T VGVL ACSH G V+ G+  F SM + Y ++P  EH
Sbjct: 358 GKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEH 417

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
           Y CM+DLLGR G+L+EA  LI  M   PD +    LL ACK+H+N +L    AK++ +  
Sbjct: 418 YGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRG 477

Query: 471 PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSH 530
             D GTY+LLS++YA+S KW E A+VR  M+  G+ KEPGCS IEVN +IH F + D  H
Sbjct: 478 QADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRH 537

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           PQ ++I + L+ L + L   GY P+   VLQD+E  +KE ++  HSE+LAI +GL+S   
Sbjct: 538 PQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEP 597

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
              IR+ KNLR+C DCH+  KL AK+  + IV+RD  R+H+F++G CSCGDYW
Sbjct: 598 CTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 175/395 (44%), Gaps = 66/395 (16%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D+   A ++K C ++ A+ E + VH+  L  GF     +   ++ ++ K   L +A+ +F
Sbjct: 146 DNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVF 205

Query: 133 DQMPE------------------------------RNVVSWTTMISAYCDAKMNDKALEL 162
           ++MPE                              ++ V WT MI  +   +  ++ALE 
Sbjct: 206 EEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEA 265

Query: 163 LIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAK 219
              M  E VRPN FT   VL AC  L  L   R +H  + K   E ++FV +ALI++Y++
Sbjct: 266 FRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSR 325

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
            G +  A+ VF+EM  RD++ +N++I G + N    +A+ L++ M          T   V
Sbjct: 326 CGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGV 385

Query: 280 LRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
           L AC+   L++ G ++  H +  D+                            ++  +  
Sbjct: 386 LNACSHGGLVDFGFEI-FHSMARDYR---------------------------VEPQIEH 417

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           +  M+  L + G  +EA  L  +MK++   P++I +  +L AC     +E G    K ++
Sbjct: 418 YGCMVDLLGRVGRLEEAYDLIRTMKMT---PDHIMLGTLLSACKMHKNLELGEQVAKELE 474

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
                D G   Y  +  +   +GK +EA ++  +M
Sbjct: 475 DRGQADSGT--YVLLSHVYASSGKWKEAAQVRAKM 507



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 119/262 (45%), Gaps = 45/262 (17%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++D F R     +  RA++A   MQ   VR +  T   ++  C    A+E  + VH++
Sbjct: 247 TAMIDGFVR---NEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSY 303

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           +     E   F+ N L+NM+ +   ++EAQ +FD+M +R+V+++ TMIS       + +A
Sbjct: 304 MRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQA 363

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
           +EL   M+   +RP   T+  VL AC         H G++  GFE               
Sbjct: 364 IELFRVMVGRRLRPTNVTFVGVLNACS--------HGGLVDFGFE--------------- 400

Query: 220 LGELRNAECVFNEMPTRDLVV------WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
                    +F+ M  RD  V      +  ++    +   ++EA +L + MK      D 
Sbjct: 401 ---------IFHSM-ARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMK---MTPDH 447

Query: 274 STLTSVLRACTGLALLELGTQV 295
             L ++L AC     LELG QV
Sbjct: 448 IMLGTLLSACKMHKNLELGEQV 469


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/552 (38%), Positives = 337/552 (61%), Gaps = 5/552 (0%)

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H + +  GF  + ++ N +L M+ + + +E+A  +F+ +   +  ++ +MI+ Y D    
Sbjct: 131 HGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQL 190

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSAL 213
           D +L ++  M  E  + +  +Y AVL  C S+   ++  Q+H   +K   E +V+V SAL
Sbjct: 191 DGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYVGSAL 250

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           +D+Y K   + +A   F  +P +++V W +++  + QN   ++AL L+  M+  G   ++
Sbjct: 251 VDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNE 310

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSR 331
            T    L +C GLA L  G  +   V+K  H   L+++NAL++MY K GS+EDA  VF  
Sbjct: 311 FTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLLVSNALMNMYSKSGSIEDAHRVFIS 370

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           M  +DV+SW+ +I+G A +G ++E ++ F SM  + + P+Y+T VGVL AC+  G V++ 
Sbjct: 371 MPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLSAAVIPSYVTFVGVLSACAQLGLVDEA 430

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
           + +  +M K  GI PG+EHY+CM+ LL R G+L EA + I       D V WR+LL +C+
Sbjct: 431 FYYLNTMMKEVGITPGKEHYTCMVGLLCRVGRLDEAERFIVNNCIGTDVVAWRSLLNSCQ 490

Query: 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGC 511
           V++N  L    A++IL L+P D GTY+LLSN+YA + +WD V +VRK MR R + K PG 
Sbjct: 491 VYKNYGLGHRVAEQILQLEPSDVGTYVLLSNMYAKANRWDGVVKVRKHMRERAVRKSPGV 550

Query: 512 SWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDS 571
           SWI V   +H F   +  HPQ+D+I K L+ LI ++  +GY P+   VL D++ E+KE+ 
Sbjct: 551 SWIHVGSDVHVFTSEEKVHPQMDQIAKKLEELIDQIKAIGYVPNFAVVLHDIDDERKEEH 610

Query: 572 IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHH 631
           + YHSEKLA+ FGL+   +G TI I KNLRIC DCH   KL + + ++ IV+RD +R+H 
Sbjct: 611 LMYHSEKLALAFGLIHTPKGATIHIMKNLRICDDCHVAIKLISVVTSRKIVVRDAVRFHC 670

Query: 632 FQDGNCSCGDYW 643
            + G CSC DYW
Sbjct: 671 IEGGICSCNDYW 682



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 172/357 (48%), Gaps = 34/357 (9%)

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI--- 164
           +  L N L++ + K   +  A+ +FD MP RN VS   ++S Y  +  + ++L+LL    
Sbjct: 44  DVVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLMSGYASSGRHKESLQLLRVVD 103

Query: 165 FMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           F + E V     + +A +R+ D   + RQ H   +K GF    +V +A++ +Y +   + 
Sbjct: 104 FGMNEYVLSAAVSATANVRSYD---MGRQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHME 160

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
           +A  VF  +   D   +NS+I G+     +D +L + + M       D  +  +VL  C 
Sbjct: 161 DASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCA 220

Query: 285 GLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            +    LG QVH   LK   + ++ + +AL+DMY KC  + DA   F  + +K+V+SW+ 
Sbjct: 221 SMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTA 280

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG----------- 391
           +++   QN   ++AL+LF  M++  ++PN  T    L +C+    +  G           
Sbjct: 281 VMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTG 340

Query: 392 -WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
            W+H                 + ++++  ++G +++A ++   MP   D V+W  ++
Sbjct: 341 HWDHLLVS-------------NALMNMYSKSGSIEDAHRVFISMPLR-DVVSWNLII 383



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 144/285 (50%), Gaps = 17/285 (5%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D V+Y  ++  C +         VH   L    E   ++ + L++M+ K   + +A   F
Sbjct: 208 DYVSYVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAF 267

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192
           + +PE+NVVSWT +++AY   ++ + AL+L + M  EGV+PN FTY+  L +C  L  LR
Sbjct: 268 EVLPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALR 327

Query: 193 Q---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
               L   ++K G    + V +AL+++Y+K G + +A  VF  MP RD+V WN II G+A
Sbjct: 328 TGNALGACVMKTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITGYA 387

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE--------LGTQVHVHVLK 301
            +    E +  +  M  A       T   VL AC  L L++        +  +V +   K
Sbjct: 388 HHGLAREGMEAFHSMLSAAVIPSYVTFVGVLSACAQLGLVDEAFYYLNTMMKEVGITPGK 447

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMS-VFSRMIQKDVISWSTMIS 345
             +       ++ + C+ G L++A   + +  I  DV++W ++++
Sbjct: 448 EHY-----TCMVGLLCRVGRLDEAERFIVNNCIGTDVVAWRSLLN 487



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 5/186 (2%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  GV+ +  TYA  +  C    A+     +   V+  G      + N L+NM+ K   
Sbjct: 301 MEMEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLLVSNALMNMYSKSGS 360

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +E+A  +F  MP R+VVSW  +I+ Y    +  + +E    ML   V P+  T+  VL A
Sbjct: 361 IEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLSAAVIPSYVTFVGVLSA 420

Query: 185 CDSLIILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE-CVFNEMPTRDLV 239
           C  L ++ +    L+  + +VG        + ++ +  ++G L  AE  + N     D+V
Sbjct: 421 CAQLGLVDEAFYYLNTMMKEVGITPGKEHYTCMVGLLCRVGRLDEAERFIVNNCIGTDVV 480

Query: 240 VWNSII 245
            W S++
Sbjct: 481 AWRSLL 486


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/522 (42%), Positives = 321/522 (61%), Gaps = 4/522 (0%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L  A+ +FD +   +  ++ T+I A+ D+  +         M   GV P+ FT+  VL+A
Sbjct: 38  LSYARSIFDLIAFPDTFAFNTIIRAHADSSPSFSLSLFSK-MTMAGVSPDHFTFPFVLKA 96

Query: 185 CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           C  L     LH  + K+GF+SDV+V++ LI  Y   G L  A   F EMP RDLV W+S+
Sbjct: 97  CARLQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSM 156

Query: 245 IGGFAQNSDVDEALNLYKRMKRAG-FAADQSTLTSVLRACTGLALLELGTQVHVHVLK-- 301
           I  FA+N    EAL L++RM+  G    D+  + SV+ A + L  LELG  +   + +  
Sbjct: 157 IACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNG 216

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
            +  + L  AL+DM+ +CG +E++M VF  M +++V++W+ +I+GLA +G S EAL++F 
Sbjct: 217 LEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFY 276

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            M+    +P+++T  GVL ACSH G V +GW+ F+S++  YG++P  EHY CM+DLLGRA
Sbjct: 277 EMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRA 336

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           G L EA K +  MP  P+++ WR LLGAC  H   +LA    +KI  LD    G Y+LLS
Sbjct: 337 GLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLS 396

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
           N+Y    +W E A VR +MR + I+K+PGCS I VN  IH F   D++HPQ + I + L 
Sbjct: 397 NVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLV 456

Query: 542 HLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
            +I  L  VGY PD + VL D+E E+KE ++ YHSEKLA+ F L+     +TIR+ KNLR
Sbjct: 457 SMIDSLKVVGYTPDISNVLFDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLR 516

Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           IC DCH F K  + +  + I+IRD  R+HHF  G+CSC DYW
Sbjct: 517 ICHDCHCFMKYASDVFEREIIIRDRNRFHHFSKGSCSCRDYW 558



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 155/311 (49%), Gaps = 17/311 (5%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   GV  D  T+  ++K C AR  ++    +H+ +   GF+ + ++ N L++ +     
Sbjct: 78  MTMAGVSPDHFTFPFVLKAC-AR--LQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGF 134

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLR 183
           L+ A   F++MPER++VSW++MI+ +       +AL L   M   G V+P+      VL 
Sbjct: 135 LDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVI---VLS 191

Query: 184 ACDSLIILRQLHCG------IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
              ++ IL  L  G      I + G E  V + +AL+D++++ G +  +  VF+EM  R+
Sbjct: 192 VVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERN 251

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           ++ W ++I G A +    EAL ++  M+  GF  D  T T VL AC+   L+  G  V  
Sbjct: 252 VLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFE 311

Query: 298 HVL-KYDHDLILNN--ALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYS 353
            +  +Y  + +  +   ++D+  + G L +A      M I+ + I W T++     + Y 
Sbjct: 312 SIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYI 371

Query: 354 QEALKLFESMK 364
           + A K+ E + 
Sbjct: 372 ELAEKVKEKIN 382



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 95/214 (44%), Gaps = 22/214 (10%)

Query: 58  AMKAMHAMQCHG-VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           A+     MQ  G V+ D V    ++        +E  K +   +   G E    L   L+
Sbjct: 169 ALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALV 228

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M  +   +EE+  +FD+M ERNV++WT +I+       + +AL +   M   G +P+  
Sbjct: 229 DMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHV 288

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRS------------ALIDIYAKLGELR 224
           T++ VL AC         H G++  G+     +R+             ++D+  + G L 
Sbjct: 289 TFTGVLVACS--------HGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLN 340

Query: 225 NAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
            A    + MP R + ++W +++G    ++ ++ A
Sbjct: 341 EACKFVDGMPIRPNSIIWRTLLGACVNHNYIELA 374


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/645 (37%), Positives = 391/645 (60%), Gaps = 21/645 (3%)

Query: 13  KPS--SQARQFSLTITPPVAS-CNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHG 69
           KP+  S   Q  L + P   +  N  + N++ L+      C Q +L +A++ +       
Sbjct: 21  KPTAISPKPQCCLALRPSTTTRSNGDSNNNNPLIQSL---CKQGNLNQALQVL----SQE 73

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
                 TY  LI  C  ++++ +   +H H++  G + + FL   L+NM+ +   ++ A+
Sbjct: 74  PNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNAR 133

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---D 186
            +FD+  +R +  W  +  A   A    + L+L   M R GV  + FTY+ VL+AC   +
Sbjct: 134 KVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASE 193

Query: 187 SLIIL----RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
           + + L    R++H  I++ GFE  V + + L+D+YA+ G + NA  VF++MP +++V W+
Sbjct: 194 AFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWS 253

Query: 243 SIIGGFAQNSDVDEALNLYKRM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           ++I  +++N    EAL L+++M  +      +  T+ SVL+AC  LA LE G  +H ++L
Sbjct: 254 AMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYIL 313

Query: 301 KYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           +   D IL   +AL+ +Y +CG+LE    VF RM ++DV+SW+++IS    +G+ ++A++
Sbjct: 314 RRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQ 373

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
           +F+ M    + P+ I+ V VL ACSHAG VE+G   F+SM + + I P  EHY+CM+DLL
Sbjct: 374 IFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLL 433

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
           GRA +L EA K+I +M  EP    W +LLG+C++H N +LA  A  ++  L+P + G Y+
Sbjct: 434 GRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAERATSRLFELEPTNAGNYV 493

Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
           LL++IYA ++ W+EV  V+  + ARG+ K PG S IE+ ++I++F   D  +PQI++++ 
Sbjct: 494 LLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCIEIRRKIYSFMSVDEFNPQIEQLHA 553

Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRK 598
            L  L  ++   GY PDT  VL DL+ E+KE  +  HSEKLA+ FGL++  +G+TIRI K
Sbjct: 554 LLLKLSMEMKEKGYVPDTKVVLYDLDPEEKERIVLGHSEKLALAFGLINSKKGETIRITK 613

Query: 599 NLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           NLR+C DCH+  K  +K  N+ I++RD  R+H FQDG CSCGDYW
Sbjct: 614 NLRLCEDCHSVTKFISKFANREILVRDVNRFHLFQDGVCSCGDYW 658


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/601 (37%), Positives = 350/601 (58%), Gaps = 6/601 (0%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           F +     + + ++  MQ  GV  +S T   ++      +A+ + K +H + +   F   
Sbjct: 185 FSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDN 244

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML- 167
             L   LL+M+ K  LL  A+ +F+ + ++N V W+ MI  Y        AL L   ML 
Sbjct: 245 VVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLC 304

Query: 168 REGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
             G+ P   T + +LRAC  L  L+   +LHC +IK G + D  V ++LI +YAK G + 
Sbjct: 305 IYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMD 364

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
           NA    +EM  +D V +++II G  QN   ++AL ++++M+ +G A    T+ ++L AC+
Sbjct: 365 NAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACS 424

Query: 285 GLALLELGTQVHVH--VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            LA L+ GT  H +  V  + +D  + NA++DMY KCG +  +  +F RM  +D+ISW+T
Sbjct: 425 HLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNT 484

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           MI G   +G   EAL LF+ ++   +KP+ +T++ VL ACSH+G V +G   F SM + +
Sbjct: 485 MIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNF 544

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            I P   HY CM+DLL RAG L EA   I  MP+ P+   W ALL AC+ H+N ++    
Sbjct: 545 NIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQV 604

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           +KKI  L P+  G ++L+SNIY++  +WD+ A +R   R  G  K PGCSW+E++  IH 
Sbjct: 605 SKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHV 664

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F     SHPQ   INK L+ L+ ++  +GY  D+++VL D+E E+KE  + YHSEK+AI 
Sbjct: 665 FIGGHQSHPQSASINKKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIA 724

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           FG+++ +    I + KNLRIC DCH+  K    +  + I +RD  R+HHF+DG C+C D+
Sbjct: 725 FGILNTSPSSRILVTKNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDF 784

Query: 643 W 643
           W
Sbjct: 785 W 785



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 128/431 (29%), Positives = 227/431 (52%), Gaps = 15/431 (3%)

Query: 62  MHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK 121
           +H +Q  GV   + T+  L+K C +  A++  +L+H H    G   + ++   LL+M+ K
Sbjct: 96  LHMLQL-GVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAK 154

Query: 122 FSLLEEAQVLFDQMP--ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
              L +AQ LF+ +   +R++V+W  MI+A+    ++ + +  +  M + GV PN  T  
Sbjct: 155 CGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLV 214

Query: 180 AVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           ++L        L Q   +H   I+  F  +V +++AL+D+YAK   L  A  +FN +  +
Sbjct: 215 SILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKK 274

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMK-RAGFAADQSTLTSVLRACTGLALLELGTQV 295
           + V W+++IGG+  +  + +AL LY  M    G     +TL ++LRAC  L  L+ G ++
Sbjct: 275 NDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKL 334

Query: 296 HVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H H++K   D D  + N+L+ MY KCG +++A+     MI KD +S+S +ISG  QNGY+
Sbjct: 335 HCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYA 394

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW-NHFKSMKKFYGIDPGREHYS 412
           ++AL +F  M+ S I P   T++ +L ACSH   ++ G   H  ++ +  G        +
Sbjct: 395 EKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVR--GFTNDTSICN 452

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR--NTDLAICAAKKILNLD 470
            +ID+  + GK+  + ++   M    D ++W  ++    +H      L++    + L L 
Sbjct: 453 AIIDMYSKCGKITISREIFDRMQ-NRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLK 511

Query: 471 PQDPGTYILLS 481
           P D     +LS
Sbjct: 512 PDDVTLIAVLS 522



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 180/344 (52%), Gaps = 10/344 (2%)

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           L   H+  + ++ A+ +FDQ+P+ +VV W  MI  Y  +    +++ L + ML+ GV P 
Sbjct: 47  LARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPT 106

Query: 175 MFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
            FT+  +L+AC SL  L   R +H     +G   D++V +AL+ +YAK G L  A+ +FN
Sbjct: 107 NFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFN 166

Query: 232 EMP--TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
            +    RD+V WN++I  F+ ++   + ++   +M++AG   + STL S+L        L
Sbjct: 167 SISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANAL 226

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
             G  +H + ++  +  +++L  ALLDMY KC  L  A  +F+ + +K+ + WS MI G 
Sbjct: 227 HQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGY 286

Query: 348 AQNGYSQEALKLFESMK-VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
             +    +AL L++ M  +  + P   T+  +L AC+    ++ G      M K  G+D 
Sbjct: 287 VLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIK-SGMDL 345

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
                + +I +  + G +  AV  + EM    D V++ A++  C
Sbjct: 346 DTTVGNSLISMYAKCGIMDNAVGFLDEM-IAKDTVSYSAIISGC 388


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/573 (39%), Positives = 348/573 (60%), Gaps = 6/573 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y  +++ C+A  ++   + +H  +L  G  P+T L   L++++    L+  A+ LFD MP
Sbjct: 65  YTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMP 124

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQ 193
           +RNV  W  +I AY     ++ A++L   M+  GV P+ FTY   L+AC +L+ L   R+
Sbjct: 125 KRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGRE 184

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H  ++   +  D+FV + L+D+YAK G + +A  VF+ +  RD VVWNS+I  + QN  
Sbjct: 185 VHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGR 244

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNA 311
             EAL+L + M   G     +TL S + A    A L  G ++H    +  +D    L  +
Sbjct: 245 PMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTS 304

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV-SRIKP 370
           L+DMY K G ++ A  +F ++++++++SW+ MI G   +G+  EALKLF  M+V +++ P
Sbjct: 305 LVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTP 364

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           + IT VGVL AC+H G V++    F  M   Y I P  +H++C++D+LG AG+ +EA  L
Sbjct: 365 DNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDL 424

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
           I  MP +PD+  W ALL  CK+H+N +L   A +K++ L+P+D G Y+LLSNIYA S KW
Sbjct: 425 IKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQSGKW 484

Query: 491 DEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGV 550
           ++ A VRK M  RG+ K  GCSWIE+  + H F V D+SHP+  +I + L+ L   +   
Sbjct: 485 EKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLEGLMSDA 544

Query: 551 GYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFA 610
           GY PDT  V  D+  ++K + ++ HSE+LAI FGL+S   G  + + KNLR+C DCH   
Sbjct: 545 GYMPDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLRVCEDCHVVI 604

Query: 611 KLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KL +++  + I+IRD  RYHHF +G CSC DYW
Sbjct: 605 KLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 152/308 (49%), Gaps = 14/308 (4%)

Query: 51  YQRDLPR--AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           Y RD P   A++    M  +GV  D+ TY   +K C A   +E  + VH  VL   +  +
Sbjct: 138 YARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGREVHERVLGTHWGED 197

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F+   L++M+ K   +++A+ +FD++  R+ V W +MI+AY       +AL L   M  
Sbjct: 198 MFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAA 257

Query: 169 EGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
            GV P + T  + + A      L   R+LH    + GF+    ++++L+D+YAK G ++ 
Sbjct: 258 NGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQV 317

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK-RAGFAADQSTLTSVLRACT 284
           A  +F ++  R+LV WN++I G+  +   DEAL L+ +M+  A    D  T   VL AC 
Sbjct: 318 ARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACN 377

Query: 285 GLALLE-----LGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVI 338
              +++      G  V V+ +K          L+D+    G  E+A  +   M +Q D  
Sbjct: 378 HGGMVKEAKEFFGLMVDVYSIKPTVQHF--TCLVDVLGHAGRFEEAYDLIKGMPMQPDSG 435

Query: 339 SWSTMISG 346
            W  +++G
Sbjct: 436 IWGALLNG 443


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/592 (36%), Positives = 348/592 (58%), Gaps = 6/592 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+  + +M   G   + VT+   +  C      E+ +++H  V+  G      + N L++
Sbjct: 346 ALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVS 405

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   + E++ +  QMP R+VV+W  +I  Y + +  DKAL     M  EGV  N  T
Sbjct: 406 MYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYIT 465

Query: 178 YSAVLRAC----DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
             +VL AC    D L   + LH  I+  GFESD  V+++LI +YAK G+L +++ +FN +
Sbjct: 466 VVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL 525

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             R+++ WN+++   A +   +E L L  +M+  G + DQ + +  L A   LA+LE G 
Sbjct: 526 DNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQ 585

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+H   +K  ++HD  + NA  DMY KCG + + + +    + + + SW+ +IS L ++G
Sbjct: 586 QLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHG 645

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           Y +E    F  M    IKP ++T V +L ACSH G V+ G  ++  + + +G++P  EH 
Sbjct: 646 YFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHC 705

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
            C+IDLLGR+G+L EA   I +MP +P+ + WR+LL +CK+H N D    AA+ +  L+P
Sbjct: 706 ICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEP 765

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
           +D   Y+L SN++A + +W++V  VRK M  + I K+  CSW+++  ++ +F + D +HP
Sbjct: 766 EDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHP 825

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
           Q  +I   L+ + + +   GY  DT+  LQD + EQKE ++  HSE+LA+ + LMS  +G
Sbjct: 826 QTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEG 885

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            T+RI KNLRIC DCH+  K  +++  + IV+RD  R+HHF+ G CSC DYW
Sbjct: 886 STVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 206/400 (51%), Gaps = 8/400 (2%)

Query: 69  GVRADSVTYAELIKCCLARHAV-EEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           G++  S   A L+  C    ++  E   VH  V   G   + ++   +L+++  + L+  
Sbjct: 53  GIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSC 112

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           ++ +F++MP+RNVVSWT+++  Y D    ++ +++   M  EGV  N  + S V+ +C  
Sbjct: 113 SRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGL 172

Query: 188 L---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L    + RQ+   ++K G ES + V ++LI +   +G +  A  +F++M  RD + WNSI
Sbjct: 173 LKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSI 232

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
              +AQN  ++E+  ++  M+R     + +T++++L     +   + G  +H  V+K  +
Sbjct: 233 AAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGF 292

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           D  + + N LL MY   G   +A  VF +M  KD+ISW+++++    +G S +AL L  S
Sbjct: 293 DSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCS 352

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           M  S    NY+T    L AC    F E G      +    G+   +   + ++ + G+ G
Sbjct: 353 MISSGKSVNYVTFTSALAACFTPDFFEKG-RILHGLVVVSGLFYNQIIGNALVSMYGKIG 411

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           ++ E+ +++ +MP   D V W AL+G      + D A+ A
Sbjct: 412 EMSESRRVLLQMP-RRDVVAWNALIGGYAEDEDPDKALAA 450



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 192/395 (48%), Gaps = 6/395 (1%)

Query: 64  AMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123
            M+  GV  +  + + +I  C         + +   V+  G E +  + N L++M     
Sbjct: 150 GMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMG 209

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS---A 180
            ++ A  +FDQM ER+ +SW ++ +AY      +++  +   M R     N  T S   +
Sbjct: 210 NVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLS 269

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           VL   D     R +H  ++K+GF+S V V + L+ +YA  G    A  VF +MPT+DL+ 
Sbjct: 270 VLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLIS 329

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VH 298
           WNS++  F  +    +AL L   M  +G + +  T TS L AC      E G  +H  V 
Sbjct: 330 WNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVV 389

Query: 299 VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           V    ++ I+ NAL+ MY K G + ++  V  +M ++DV++W+ +I G A++    +AL 
Sbjct: 390 VSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALA 449

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
            F++M+V  +  NYIT+V VL AC   G + +      +     G +      + +I + 
Sbjct: 450 AFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMY 509

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            + G L  +  L + +    + +TW A+L A   H
Sbjct: 510 AKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAHH 543



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 186/344 (54%), Gaps = 20/344 (5%)

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ KF  ++ A+ LFD MP RN VSW TM+S      +  + +E    M   G++P+ F 
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 178 YSAVLRACD-SLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
            ++++ AC  S  + R   Q+H  + K G  SDV+V +A++ +Y   G +  +  VF EM
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           P R++V W S++ G++   + +E +++YK M+  G   ++++++ V+ +C  L    LG 
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+   V+K   +  L + N+L+ M    G+++ A  +F +M ++D ISW+++ +  AQNG
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG--IDPGRE 409
           + +E+ ++F  M+    + N  T+  +L    H        +H K  +  +G  +  G +
Sbjct: 241 HIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHV-------DHQKWGRGIHGLVVKMGFD 293

Query: 410 HYSCMIDLLGR----AGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
              C+ + L R    AG+  EA  +  +MP + D ++W +L+ +
Sbjct: 294 SVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK-DLISWNSLMAS 336


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/632 (36%), Positives = 367/632 (58%), Gaps = 41/632 (6%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
            C Q+ L  A++ +   +    +  + TY  LI+ C    A+EE K VH H+ + GF P 
Sbjct: 66  LCGQKLLREAVQLLGRAK----KPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPG 121

Query: 109 TFLVNILLNMHVK-------------------------------FSLLEEAQVLFDQMPE 137
             + N +L M+ K                                 LLEEA+ LFD+MPE
Sbjct: 122 IVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPE 181

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLR-EGVRPNMFTYSAVLRACDSLIILR---Q 193
           R+  SWT M++ Y      ++AL L   M R    +PN+FT S+ + A  ++  +R   +
Sbjct: 182 RDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKE 241

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H  I++ G +SD  + S+L+D+Y K G +  A  +F+++  +D+V W S+I  + ++S 
Sbjct: 242 IHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSR 301

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNA 311
             E  +L+  +  +    ++ T + VL AC  L   ELG QVH ++ +  +D     +++
Sbjct: 302 WREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSS 361

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+DMY KCG++E A  V     + D++S +++I G AQNG   EALK F+ +  S  KP+
Sbjct: 362 LIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPD 421

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
           ++T V VL AC+HAG VE G   F S+ + + +    +HY+C++DLL R+G+ ++   ++
Sbjct: 422 HVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVL 481

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
            EMP +P    W ++LG C  + N DLA  AA+++  ++P++P TY+ ++NIYA + KW+
Sbjct: 482 SEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWE 541

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
           E  ++RK M+  GITK+PG SW E+ ++ H F  AD+SHP  ++I + L  L +K+   G
Sbjct: 542 EEGKMRKRMQEIGITKKPGSSWTEIKRKRHVFIAADTSHPMYNQIIEFLGELRKKMKEEG 601

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           Y P T+ VL D+E EQKE+++ YHSEKLA+ F ++S  +G  I++ KNLR C DCH+  K
Sbjct: 602 YVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHSAIK 661

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             +K+  + I IRD  R+H F++G CSC DYW
Sbjct: 662 FISKITKRKITIRDSTRFHCFENGQCSCRDYW 693


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/642 (37%), Positives = 351/642 (54%), Gaps = 18/642 (2%)

Query: 7   SKLKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQ 66
           SKL    P+    Q  L +TP           S S+ + +           A+     M+
Sbjct: 3   SKLDLPNPA----QLLLQLTPTRCVVTWTALISGSVQNGY--------FSSALLYFSKMR 50

Query: 67  CHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLE 126
              ++ +  T+    K   A       K +H   L  G   + F+     +M+ K  L  
Sbjct: 51  RENIKPNDFTFPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKF 110

Query: 127 EAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD 186
           EAQ LFD+MP RNV  W   IS         KA++  I   R G  P++ T+ A L AC 
Sbjct: 111 EAQRLFDEMPPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACA 170

Query: 187 S---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
               L + RQLH  +I+ GFE DV V + +ID+Y K  E+  AE VFN M  R+ V W +
Sbjct: 171 DARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCT 230

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-- 301
           ++    QN + ++A  ++   ++ G       ++SV+ A  G++ LE G  VH   +K  
Sbjct: 231 MVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKAC 290

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
            + D+ + +AL+DMY KCGS+ED   VF  M +++++SW+ MISG A  G    A+ LFE
Sbjct: 291 VEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFE 350

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            M+ S    NY+T++ VL ACS  G V+ G   F+SM+  Y I+PG EHY+C+ D+LGRA
Sbjct: 351 EMQ-SEAVANYVTLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIADMLGRA 409

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           G ++ A + + +MP  P    W ALL AC+V+   +L   AA  +  LDP+D G ++LLS
Sbjct: 410 GMVERAYEFVQKMPIRPTISVWGALLNACRVYGEPELGKIAADNLFKLDPKDSGNHVLLS 469

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
           N++A + +WDE   VRK M+  GI K  GCSW+    ++H F   D+SH +  +I   L 
Sbjct: 470 NMFAAAGRWDEATLVRKEMKDVGIKKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQAMLV 529

Query: 542 HLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
            L  ++   GY PDTNY L DLE E+K   + YHSEK+A+ FGL++L  G  IRI KNLR
Sbjct: 530 KLRTEMQAAGYMPDTNYALYDLEEEEKMTEVGYHSEKIALAFGLIALPPGVPIRITKNLR 589

Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           ICGDCH+  K  + +  + I++RD  R+H F+D  CSC D+W
Sbjct: 590 ICGDCHSAFKFISGIVGREIIVRDNNRFHRFRDSQCSCRDFW 631



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 201/408 (49%), Gaps = 28/408 (6%)

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K  L   AQ+L    P R VV+WT +IS          AL     M RE ++PN FT
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFT 60

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +    +A  +L +    +Q+H   +K+G  +D FV  +  D+Y+K G    A+ +F+EMP
Sbjct: 61  FPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMP 120

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            R++ VWN+ I     +    +A++ +   +R G   D  T  + L AC     L+LG Q
Sbjct: 121 PRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQ 180

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  V++  ++ D+ + N ++D+Y KC  +E A  VF+ M +++ +SW TM++   QN  
Sbjct: 181 LHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDE 240

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKK------FYGID 405
            ++A  +F   +   I+     +  V+ A +    +E G + H  ++K       F G  
Sbjct: 241 KEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVG-- 298

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
                 S ++D+ G+ G +++  ++ HEMP E + V+W A++       + D+A+   ++
Sbjct: 299 ------SALVDMYGKCGSIEDCEQVFHEMP-ERNLVSWNAMISGYAHQGDVDMAMTLFEE 351

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVA---EVRKTMRARGITKEPG 510
              +  +    Y+ L  + +   +   V    E+ ++MR R    EPG
Sbjct: 352 ---MQSEAVANYVTLICVLSACSRGGAVKLGNEIFESMRDR-YRIEPG 395


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/609 (37%), Positives = 365/609 (59%), Gaps = 17/609 (2%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105
            TR+       +A++    M   G   D  T + ++  C  + +    + +H+ VL  G 
Sbjct: 221 ITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGL 280

Query: 106 EPETFLVNILLNMHVKFSL---LEEAQVLFDQMPERNVVSWTTMISAY--CDAKMNDKAL 160
             +T +   L++M+ K  +   +E A+ +F +MP  NV+SWT +IS Y  C  + N+ A+
Sbjct: 281 VSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENN-AV 339

Query: 161 ELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIY 217
           ELL  ML E + PN  TYS++L+AC +L      RQ+H  ++K    +   V +AL+ +Y
Sbjct: 340 ELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMY 399

Query: 218 AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT 277
           A+ G +  A   F+++  R+L+  +S IG   +++      +   +++         T  
Sbjct: 400 AESGCMEEARKAFDQLYERNLLSTSSDIGETGRSN-----ASWSSQIESMDVGVSTFTFA 454

Query: 278 SVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK 335
           S+L A   + L   G Q+H   +K  ++ D  ++N+L+ MY +CG L+DA   F  M   
Sbjct: 455 SLLSAAATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDD 514

Query: 336 -DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
            +VISW+++IS LA++G+++ AL LF  M +S +KPN +T + VL ACSH G V++G  +
Sbjct: 515 HNVISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEY 574

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR 454
           F+SM+K + + P  EHY+CM+DLL R+G +QEA++ I+EMP + DA+ W+ LLGAC+ + 
Sbjct: 575 FRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACRTYE 634

Query: 455 NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWI 514
           N ++   AA+ +++L+PQDP  Y+LLSN+YA+   WDEVA +R  MR R ++KE G SW+
Sbjct: 635 NIEIGEIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWM 694

Query: 515 EVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQY 574
            V   IH F   D+SHP+  +I   L  LI+++  +GY PDT+ VL D+  + KE  +  
Sbjct: 695 HVGNTIHEFRAGDTSHPRAQEIYAKLAVLIREIKDIGYVPDTSIVLHDMSDKLKEQCLLQ 754

Query: 575 HSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQD 634
           HSEK+A+ FGL++    K IRI KNLR+C DCH+  K  +K   + I++RD  R+H  +D
Sbjct: 755 HSEKIAVAFGLITTLPTKPIRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKD 814

Query: 635 GNCSCGDYW 643
           G CSCG+YW
Sbjct: 815 GKCSCGEYW 823



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/357 (31%), Positives = 177/357 (49%), Gaps = 16/357 (4%)

Query: 105 FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE-RNVVSWTTMISAYCDAKMNDKALELL 163
            + +  + N LL M+ K   +  A+ +FD M   R++VSWT M           +AL LL
Sbjct: 75  LDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLL 134

Query: 164 IFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGI----IKVGF-ESDVFVRSALIDIYA 218
             ML  G+RPN FT  A   AC    + R     +    IK GF  +DV V  ALID++A
Sbjct: 135 GEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFA 194

Query: 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278
           + G+L  A  VFN +  R +VVW  +I  + Q     +A+ L+  M   GF  D  T++S
Sbjct: 195 RNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSS 254

Query: 279 VLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKC---GSLEDAMSVFSRMI 333
           ++ AC       LG Q+H  VL+     D  ++  L+DMY K     S+E A  VF RM 
Sbjct: 255 MVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMP 314

Query: 334 QKDVISWSTMISGLAQ-NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
             +V+SW+ +ISG  Q  G    A++L   M    I+PN++T   +L AC++    + G 
Sbjct: 315 THNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGR 374

Query: 393 N-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
             H + MK    I       + ++ +   +G ++EA K   ++ YE + ++  + +G
Sbjct: 375 QIHARVMKT--SIGNVNVVGNALVSMYAESGCMEEARKAFDQL-YERNLLSTSSDIG 428


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 238/626 (38%), Positives = 356/626 (56%), Gaps = 12/626 (1%)

Query: 27  PPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMH---AMQCHGVRADSVTYAELIKC 83
           P +    T T +++ L +   R    +D  R   A+H   +M    +  DS T++ ++K 
Sbjct: 56  PILVFHKTPTNSNTFLYNTMIRGMVSKD--RFNNAVHLYASMHKAAIVPDSFTFSFVLKA 113

Query: 84  CLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSW 143
           C   +      ++H+ V   GF+ + F+   ++  + K   L +A  +FD M  +NVVSW
Sbjct: 114 CARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSW 173

Query: 144 TTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIK 200
           T MI    +     +A++L   +L  G+RP+ F    VLRAC  L  L   R +   + +
Sbjct: 174 TGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRE 233

Query: 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNL 260
            G   +VFV ++L+D+Y K G +  A  VF+ M  +D+V W+++I G+A N    EA+ L
Sbjct: 234 CGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIEL 293

Query: 261 YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL---ILNNALLDMYC 317
           +  M++     D   +   L +C  L  LELG      ++ Y+  L   +L  +L+D Y 
Sbjct: 294 FFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAK-GLMNYEEFLSNPVLGTSLIDFYA 352

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           KCGS+E+A+ V+  M +KD + ++ +ISGLA  G    A  +F  M    I PN  T VG
Sbjct: 353 KCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVG 412

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           +L  C+HAG V+DG ++F SM   + + P  EHY CM+DLL RAG L EA  LI  MP +
Sbjct: 413 LLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMK 472

Query: 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497
            + + W +LLG C++HR T LA    K+++ L+P + G Y+LLSNIY+ S++WDE  ++R
Sbjct: 473 ANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIR 532

Query: 498 KTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTN 557
            T+  +G+ K PG SW+EV+  +H F V D+SHP   KI + L+ L + L   GY P T 
Sbjct: 533 STVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTE 592

Query: 558 YVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKME 617
           +VL D+E E+KE  +  HSEKLA+ F L+S      IR+ KNLR+CGDCH   K  +K+ 
Sbjct: 593 FVLFDVEEEEKEHFLGCHSEKLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVT 652

Query: 618 NQTIVIRDPIRYHHFQDGNCSCGDYW 643
            + IVIRD  R+H F DG CSC DYW
Sbjct: 653 GREIVIRDNNRFHCFSDGACSCRDYW 678


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/604 (36%), Positives = 345/604 (57%), Gaps = 35/604 (5%)

Query: 75  VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ 134
           VT   ++K   +   V   K +H  V+  GFE    + + LL M+     + +A+ +F  
Sbjct: 140 VTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYG 199

Query: 135 MPERNVV------------------------------SWTTMISAYCDAKMNDKALELLI 164
           + +RN V                              SW  MI       +  +A+E   
Sbjct: 200 LDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFR 259

Query: 165 FMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
            M  +G++ + + + +VL AC  L  +   +Q+H  II+  F+  ++V SALID+Y K  
Sbjct: 260 EMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCK 319

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
            L  A+ VF+ M  +++V W +++ G+ Q    +EA+ ++  M+R+G   D  TL   + 
Sbjct: 320 CLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAIS 379

Query: 282 ACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
           AC  ++ LE G+Q H   +     H + ++N+L+ +Y KCG ++D+  +F+ M  +D +S
Sbjct: 380 ACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVS 439

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           W+ M+S  AQ G + E ++LF+ M    +KP+ +T+ GV+ ACS AG VE G  +FK M 
Sbjct: 440 WTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMT 499

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
             YGI P   HYSCMIDL  R+G+L+EA++ I+ MP+ PDA+ W  LL AC+   N ++ 
Sbjct: 500 SEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIG 559

Query: 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQ 519
             AA+ ++ LDP  P  Y LLS+IYA+  KWD VA++R+ MR + + KEPG SWI+   +
Sbjct: 560 KWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGK 619

Query: 520 IHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKL 579
           +H+F+  D S P +D+I   L+ L  K++  GY PDT++V  D+E   K   + YHSE+L
Sbjct: 620 LHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERL 679

Query: 580 AIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
           AI FGL+ +  G+ IR+ KNLR+C DCH   K  + +  + I++RD +R+H F+DG CSC
Sbjct: 680 AIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSC 739

Query: 640 GDYW 643
           GD+W
Sbjct: 740 GDFW 743



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 201/386 (52%), Gaps = 50/386 (12%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           +P  F  N LL  + K  L+ E +  F+++P+R+ V+W  +I  Y  + +   A++    
Sbjct: 69  QPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNT 128

Query: 166 MLREG----VRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
           M+R+      R  + T   +  +   + + +Q+H  +IK+GFES + V S L+ +YA +G
Sbjct: 129 MMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVG 188

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIG------------------------------GFAQN 251
            + +A+ VF  +  R+ V++NS++G                              G AQN
Sbjct: 189 CISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQN 248

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILN 309
               EA+  ++ MK  G   DQ    SVL AC GL  +  G Q+H  +++  +   + + 
Sbjct: 249 GLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVG 308

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
           +AL+DMYCKC  L  A +VF RM QK+V+SW+ M+ G  Q G ++EA+K+F  M+ S I 
Sbjct: 309 SALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGID 368

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG--IDPGREHY----SCMIDLLGRAGK 423
           P++ T+   + AC++   +E+G        +F+G  I  G  HY    + ++ L G+ G 
Sbjct: 369 PDHYTLGQAISACANVSSLEEG-------SQFHGKAITSGLIHYVTVSNSLVTLYGKCGD 421

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGA 449
           + ++ +L +EM    DAV+W A++ A
Sbjct: 422 IDDSTRLFNEMNVR-DAVSWTAMVSA 446



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 159/302 (52%), Gaps = 9/302 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+  G++ D   +  ++  C    A+ E K +H  ++   F+   ++ + L++
Sbjct: 254 AIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALID 313

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L  A+ +FD+M ++NVVSWT M+  Y      ++A+++ + M R G+ P+ +T
Sbjct: 314 MYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYT 373

Query: 178 YSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
               + AC ++  L    Q H   I  G    V V ++L+ +Y K G++ ++  +FNEM 
Sbjct: 374 LGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMN 433

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD V W +++  +AQ     E + L+ +M + G   D  TLT V+ AC+   L+E G Q
Sbjct: 434 VRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKG-Q 492

Query: 295 VHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQ 349
            +  ++  ++ ++ +    + ++D++ + G LE+AM   + M    D I W+T++S    
Sbjct: 493 RYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRN 552

Query: 350 NG 351
            G
Sbjct: 553 KG 554



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 115/267 (43%), Gaps = 68/267 (25%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS------- 243
           ++ +H  II+     + F+ + ++  YA +     A  VF+ +P  +L  WN+       
Sbjct: 25  VKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSK 84

Query: 244 ------------------------IIGGFAQNSDVDEALNLYKRMKRAGFAAD--QSTLT 277
                                   +I G++ +  V  A+  Y  M R  F+A+  + TL 
Sbjct: 85  AGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMR-DFSANLTRVTLM 143

Query: 278 SVLRACTGLALLELGTQVHVHVLKY---------------------------------DH 304
           ++L+  +    + LG Q+H  V+K                                  D 
Sbjct: 144 TMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDR 203

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           + ++ N+L+     CG +EDA+ +F R ++KD +SW+ MI GLAQNG ++EA++ F  MK
Sbjct: 204 NTVMYNSLMGGLLACGMIEDALQLF-RGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMK 262

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDG 391
           V  +K +      VL AC   G + +G
Sbjct: 263 VQGLKMDQYPFGSVLPACGGLGAINEG 289


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/623 (38%), Positives = 364/623 (58%), Gaps = 17/623 (2%)

Query: 31   SCNTITRNSS-SLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHA 89
            S +T++ NS  S LD   RF        A+   H M+ +G+   + +    +  C +   
Sbjct: 519  SKDTVSWNSMISGLDHNERF------EEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGW 572

Query: 90   VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
            +   + +H      G + +  + N LL ++ +   + E Q +F QMPE + VSW + I A
Sbjct: 573  LTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGA 632

Query: 150  YCDAKMND-KALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFES 205
                + +  +AL+  + M++ G RPN  T+  +L A  S  +L    Q+H  I+K     
Sbjct: 633  LAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVAD 692

Query: 206  DVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRM 264
            D  + +AL+  Y K  ++ + E +F+ M  R D V WNS+I G+  +  + +A++L   M
Sbjct: 693  DNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPM 752

Query: 265  KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSL 322
             + G   D  T  +VL AC  +A LE G +VH   ++   + D+++ +AL+DMY KCG +
Sbjct: 753  MQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKI 812

Query: 323  EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
            + A   F  M  +++ SW++MISG A++G+ Q+ALK+F  MK     P+++T VGVL AC
Sbjct: 813  DYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSAC 872

Query: 383  SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
            SH G V++G+ HFKSM + YG+ P  EH+SCM+DLLGRAG +++    I  MP +P+ + 
Sbjct: 873  SHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILI 932

Query: 443  WRALLGAC--KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTM 500
            WR +LGAC     RNT+L   AAK ++ L+PQ+   Y+LLSN++A    W++V E R  M
Sbjct: 933  WRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAM 992

Query: 501  RARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVL 560
            R   + K+ GCSW+ +   +H F   D +HP+ +KI + LK L+ K+   GY P+T Y L
Sbjct: 993  RKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPETKYAL 1052

Query: 561  QDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQT 620
             DLE E KE+ + YHSEKLAI F L   ++   IRI KNLR+CGDCHT  K  +K+  + 
Sbjct: 1053 YDLELENKEELLSYHSEKLAIAFVLTRKSE-LPIRIMKNLRVCGDCHTAFKYISKIVGRQ 1111

Query: 621  IVIRDPIRYHHFQDGNCSCGDYW 643
            I++RD  R+HHF  G CSCGDYW
Sbjct: 1112 IILRDSNRFHHFGGGMCSCGDYW 1134



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 205/430 (47%), Gaps = 19/430 (4%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGV----RADSVTYAELIK--CCLARHAV 90
           RNS +     + +C + D   A K    MQ  GV    R +  T   L+   C LA   +
Sbjct: 308 RNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGL 367

Query: 91  EEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
              + +   +   GF  + ++ + L+N   ++ L++ A+++F QM +RN V+   ++   
Sbjct: 368 VLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGL 427

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ-------LHCGIIKVGF 203
                 ++A ++   M ++ V  N  +   +L        L++       +H  + + G 
Sbjct: 428 ARQHQGEEAAKVFKEM-KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGL 486

Query: 204 -ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
            ++ + + +AL+++Y K   + NA  VF  MP++D V WNS+I G   N   +EA++ + 
Sbjct: 487 VDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFH 546

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCG 320
            MKR G      ++ S L +C+ L  L LG Q+H    K+  D D+ ++NALL +Y +  
Sbjct: 547 TMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETD 606

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS-QEALKLFESMKVSRIKPNYITIVGVL 379
           S+ +   VF +M + D +SW++ I  LA+   S  +ALK F  M  +  +PN +T + +L
Sbjct: 607 SINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINIL 666

Query: 380 FACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD 439
            A S    +  G +   ++   Y +       + ++   G+  ++++   +   M    D
Sbjct: 667 AAVSSFSVLGLG-HQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRD 725

Query: 440 AVTWRALLGA 449
            V+W +++  
Sbjct: 726 EVSWNSMISG 735



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 196/382 (51%), Gaps = 26/382 (6%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           ++ +A  +H  +   GF  + F  N L+N++V+   L  A+ LFD+MP++N+VSW+ +IS
Sbjct: 155 SLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLIS 214

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD-----SLIILRQLHCGIIKVGF 203
            Y   +M D+A  L   ++  G+ PN F   + LRAC       + +  Q+H  I K+  
Sbjct: 215 GYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPC 274

Query: 204 ESDVFVRSALIDIYAKL-GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
            SD+ + + L+ +Y+   G + +A  VF+E+  R+ V WNSII  + +  D   A  L+ 
Sbjct: 275 VSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFS 334

Query: 263 RMKRAG----FAADQSTLTS-VLRACT----GLALLELGTQVHVHVLK--YDHDLILNNA 311
            M+  G       ++ TL S V  AC+    GL LLE   Q+   + K  +  DL + +A
Sbjct: 335 VMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLE---QMLTRIEKSGFLRDLYVGSA 391

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L++ + + G ++ A  +F +M  ++ ++ + ++ GLA+    +EA K+F+ MK   ++ N
Sbjct: 392 LVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMK-DLVEIN 450

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYG----IDPGREHYSCMIDLLGRAGKLQEA 427
             ++V +L   +    +++G    + +  +      +D      + ++++ G+   +  A
Sbjct: 451 SESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNA 510

Query: 428 VKLIHEMPYEPDAVTWRALLGA 449
             +   MP   D V+W +++  
Sbjct: 511 CSVFQLMP-SKDTVSWNSMISG 531



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 167/332 (50%), Gaps = 26/332 (7%)

Query: 183 RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
           +   SL     LH  + K GF  DVF  + LI+IY ++G L +A  +F+EMP ++LV W+
Sbjct: 151 KTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWS 210

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT--GLALLELGTQVHVHVL 300
            +I G+ QN   DEA +L+K +  +G   +   + S LRAC   G   ++LG Q+H  + 
Sbjct: 211 CLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFIC 270

Query: 301 KYD--HDLILNNALLDMYCKC-GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           K     D+IL+N L+ MY  C GS++DA  VF  +  ++ ++W+++IS   + G +  A 
Sbjct: 271 KLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAF 330

Query: 358 KLFESMKVS----RIKPNYITIVG-VLFACSHA--GFV--EDGWNHFKSMKKFYGIDPGR 408
           KLF  M++      ++PN  T+   V  ACS A  G V  E      +       +  G 
Sbjct: 331 KLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVG- 389

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL-GACKVHRNTDLA--ICAAKK 465
              S +++   R G L +  K+I +  Y+ +AVT   L+ G  + H+  + A      K 
Sbjct: 390 ---SALVNGFARYG-LMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKD 445

Query: 466 ILNLDPQD----PGTYILLSNIYANSQKWDEV 493
           ++ ++ +       T+   SN+    +K  EV
Sbjct: 446 LVEINSESLVVLLSTFTEFSNLKEGKRKGQEV 477


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/592 (36%), Positives = 351/592 (59%), Gaps = 5/592 (0%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++   AM+  G+ A   T++ ++        +     VH  VL        F+ N LL
Sbjct: 219 QALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLL 278

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           + + K   L++ + LFD+MPER+ VS+  +I+AY   +     L L   M + G    + 
Sbjct: 279 DFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVL 338

Query: 177 TYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
            Y+ +L    SL    I +Q+H  ++ +G  S+  + +ALID+Y+K G L  A+  F+  
Sbjct: 339 PYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNR 398

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +  + W ++I G+ QN   +EAL L+  M+RAG   D++T +S+++A + LA++ LG 
Sbjct: 399 SEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGR 458

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+H ++++  Y   +   + L+DMY KCG L++A+  F  M +++ ISW+ +IS  A  G
Sbjct: 459 QLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYG 518

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
            ++ A+K+FE M      P+ +T + VL ACSH G  ++   +F  MK  Y I P +EHY
Sbjct: 519 EAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHY 578

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +C+ID LGR G   +  K++ EMP++ D + W ++L +C++H N +LA  AA K+  ++P
Sbjct: 579 ACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEP 638

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
            D   Y++LSNIYA + +W++ A V+K MR RG+ KE G SW+E+ ++I++F   D + P
Sbjct: 639 TDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSP 698

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
            ID+I   L  L +++   GY PD    L  ++ E K +S++YHSE+LAI F LM+   G
Sbjct: 699 MIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAG 758

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             IRI KNL  C DCH   K+ +K+ N+ I++RD  R+HHF+DG CSCGDYW
Sbjct: 759 TPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 170/345 (49%), Gaps = 16/345 (4%)

Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
           F +N++L+ +     L  AQ LF   P RN  +WT M+ A+  A     AL L   ML E
Sbjct: 75  FSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGE 134

Query: 170 GVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           GV P+  T + VL      +    LH   IK G ++ VFV + L+D Y K G L  A  V
Sbjct: 135 GVIPDRVTVTTVLNLPGCTV--PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRV 192

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F EM  +D V +N+++ G ++     +AL L+  M+RAG  A   T +S+L    G+A L
Sbjct: 193 FLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHL 252

Query: 290 ELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
            LG QVH  VL+     ++ +NN+LLD Y KC  L+D   +F  M ++D +S++ +I+  
Sbjct: 253 LLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAY 312

Query: 348 AQNGYSQEALKLFESMK---VSRIKPNYITIVGVLFACSHAGFVEDG--WNHFKSMKKFY 402
           A N  +   L+LF  M+     R    Y T++ V      AG + D        +     
Sbjct: 313 AWNQCAATVLRLFREMQKLGFDRQVLPYATMLSV------AGSLPDVHIGKQIHAQLVLL 366

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           G+       + +ID+  + G L +A K       E  A++W AL+
Sbjct: 367 GLASEDLLGNALIDMYSKCGML-DAAKSNFSNRSEKSAISWTALI 410



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 109/238 (45%), Gaps = 35/238 (14%)

Query: 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFES----DV 207
           DA+M     ++L + L  G+R              SL+    LH    +  F+     ++
Sbjct: 31  DARMVKTGFDVLTYRLNLGLR--------------SLLSSGHLHRA--RAMFDQMPHKNI 74

Query: 208 FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
           F  + ++  Y+  G+L  A+ +F   P R+   W  ++   A      +AL+L++ M   
Sbjct: 75  FSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGE 134

Query: 268 GFAADQSTLTSVLR--ACTGLAL----LELGTQVHVHVLKYDHDLILNNALLDMYCKCGS 321
           G   D+ T+T+VL    CT  +L    ++ G   HV V          N LLD YCK G 
Sbjct: 135 GVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVC---------NTLLDAYCKHGL 185

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL 379
           L  A  VF  M  KD ++++ M+ G ++ G   +AL+LF +M+ + I   + T   +L
Sbjct: 186 LAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSIL 243


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/579 (38%), Positives = 350/579 (60%), Gaps = 8/579 (1%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           +   +   +  C     V+E    H  +   G     ++ + L++M+ + S +E A  + 
Sbjct: 116 NEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVL 175

Query: 133 DQMPERNV---VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
           D +P  +V    S+ ++++A  ++   ++A+E+L  M+ E V  +  TY  V+  C  + 
Sbjct: 176 DTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIR 235

Query: 190 ILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            L+   ++H  +++ G   D FV S LID+Y K GE+ NA  VF+ +  R++VVW +++ 
Sbjct: 236 DLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMT 295

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDH 304
            + QN   +E+LNL+  M R G   ++ T   +L AC G+A L  G  +H  V  L + +
Sbjct: 296 AYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKN 355

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
            +I+ NAL++MY K GS++ + +VF+ MI +D+I+W+ MI G + +G  ++AL++F+ M 
Sbjct: 356 HVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMV 415

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
            +   PNY+T +GVL A SH G V++G+ +   + + + I+PG EHY+CM+ LL RAG L
Sbjct: 416 SAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLL 475

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484
            EA   +     + D V WR LL AC VHRN DL    A+ +L +DP D GTY LLSN+Y
Sbjct: 476 DEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMY 535

Query: 485 ANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLI 544
           A +++WD V  +RK MR R I KEPG SW+++   IH F    S+HP+  +I K ++ L+
Sbjct: 536 AKARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPESIQIYKKVQQLL 595

Query: 545 QKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICG 604
             +  +GY P+   VL D+E EQKE  + YHSEKLA+ +GLM +     IRI KNLR+C 
Sbjct: 596 ALIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIPSPAPIRIIKNLRMCD 655

Query: 605 DCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           DCHT  KL +K+ N+ I++RD  R+HHF+DG+C+C D+W
Sbjct: 656 DCHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 173/345 (50%), Gaps = 11/345 (3%)

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR-EG 170
           +N L++++VK   L  A+ LFD MP RNVVSW  +++ Y     + + L L   M+  + 
Sbjct: 53  LNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQN 112

Query: 171 VRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
             PN + ++  L AC     ++   Q H  + K G     +V+SAL+ +Y++   +  A 
Sbjct: 113 ACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELAL 172

Query: 228 CVFNEMP---TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
            V + +P     D+  +NS++    ++   +EA+ + +RM     A D  T   V+  C 
Sbjct: 173 QVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCA 232

Query: 285 GLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            +  L+LG +VH  +L+     D  + + L+DMY KCG + +A +VF  +  ++V+ W+ 
Sbjct: 233 QIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTA 292

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           +++   QNGY +E+L LF  M      PN  T   +L AC+    +  G      ++K  
Sbjct: 293 LMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKL- 351

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           G        + +I++  ++G +  +  +  +M Y  D +TW A++
Sbjct: 352 GFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYR-DIITWNAMI 395



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 161/296 (54%), Gaps = 7/296 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++ +  M    V  D VTY  ++  C     ++    VH  +L GG   + F+ ++L++
Sbjct: 205 AVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLID 264

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +  A+ +FD +  RNVV WT +++AY      +++L L   M REG  PN +T
Sbjct: 265 MYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYT 324

Query: 178 YSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           ++ +L AC  +  LR    LH  + K+GF++ V VR+ALI++Y+K G + ++  VF +M 
Sbjct: 325 FAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMI 384

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD++ WN++I G++ +    +AL +++ M  A    +  T   VL A + L L++ G  
Sbjct: 385 YRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFY 444

Query: 295 VHVHVL---KYDHDLILNNALLDMYCKCGSLEDAMSVF-SRMIQKDVISWSTMISG 346
              H++   K +  L     ++ +  + G L++A +   +  ++ DV++W T+++ 
Sbjct: 445 YLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNA 500



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 126/247 (51%), Gaps = 12/247 (4%)

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
           ++L+ +Y K G+L  A  +F+ MP R++V WN ++ G+    +  E L L+K M     A
Sbjct: 54  NSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNA 113

Query: 271 -ADQSTLTSVLRACTGLALLELGTQVHVHVLKYD---HDLILNNALLDMYCKCGSLEDAM 326
             ++   T+ L AC+    ++ G Q H  + K+    H  +  +AL+ MY +C  +E A+
Sbjct: 114 CPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYV-KSALVHMYSRCSHVELAL 172

Query: 327 SVFSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
            V   +  +   D+ S++++++ L ++G  +EA+++   M    +  +++T VGV+  C+
Sbjct: 173 QVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCA 232

Query: 384 HAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
               ++ G   H + ++     D      S +ID+ G+ G++  A  +   +    + V 
Sbjct: 233 QIRDLQLGLRVHARLLRGGLMFDEFVG--SMLIDMYGKCGEVLNARNVFDGLQ-NRNVVV 289

Query: 443 WRALLGA 449
           W AL+ A
Sbjct: 290 WTALMTA 296



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 9/175 (5%)

Query: 283 CTGLALLELGTQVHVHVL----KYDHDLILN-NALLDMYCKCGSLEDAMSVFSRMIQKDV 337
           C  +  L  G  +H   L      +H  I + N+L+ +Y KCG L  A ++F  M  ++V
Sbjct: 22  CADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNV 81

Query: 338 ISWSTMISGLAQNGYSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
           +SW+ +++G    G   E L LF++M  +    PN       L ACSH G V++G     
Sbjct: 82  VSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHG 141

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE--PDAVTWRALLGA 449
            + KF G+   +   S ++ +  R   ++ A++++  +P E   D  ++ ++L A
Sbjct: 142 LLFKF-GLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNA 195


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/569 (39%), Positives = 328/569 (57%), Gaps = 44/569 (7%)

Query: 119 HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTY 178
           +V+   L  A+ L D +     V+W  MIS Y    + ++A +    M   G++ + +TY
Sbjct: 227 YVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTY 286

Query: 179 SAVLRACDS-------LIILRQLHCGIIKVGFESD----VFVRSALIDIYAKLGELRNAE 227
           ++++ AC S           RQ+H  I++   E      + V +ALI  Y K   +  A 
Sbjct: 287 TSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEAR 346

Query: 228 CVFNEMPTRDLVVWNSIIGGF-------------------------------AQNSDVDE 256
            VF++MP RD++ WN+++ G+                               AQN   +E
Sbjct: 347 RVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEE 406

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD--LILNNALLD 314
            L L+ +MK  G           + AC+ L  L+ G Q+H  V++  HD  L   NAL+ 
Sbjct: 407 GLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALIT 466

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           MY +CG +E A SVF  M   D +SW+ MI+ LAQ+G+  +A++LFE M    I P+ IT
Sbjct: 467 MYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRIT 526

Query: 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
            + +L AC+HAG +++G ++F +M   YGI PG +HY+ +IDLL RAG   +A  +I  M
Sbjct: 527 FLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSM 586

Query: 435 PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494
           P+E  A  W ALL  C++H N +L I AA ++L L P   GTYI+LSN+YA   +WDEVA
Sbjct: 587 PFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVA 646

Query: 495 EVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAP 554
            VR  MR RG+ KEPGCSW+EV   +H F V D+ HP++  +  +L+ L+ ++  +GY P
Sbjct: 647 RVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVP 706

Query: 555 DTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTA 614
           DT +VL D+E E KE S+  HSEKLA+V+G+M L  G TIR+ KNLRICGDCH   K  +
Sbjct: 707 DTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYIS 766

Query: 615 KMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           K+  + IV+RD  R+HHF++G CSCG+YW
Sbjct: 767 KVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 140/499 (28%), Positives = 221/499 (44%), Gaps = 124/499 (24%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE--------------- 137
           A+ VH H+L+ GF+P TF++N L+N++ K S +  A+ LFD++P+               
Sbjct: 24  ARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSS 83

Query: 138 ------------------RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
                             R+ VS+  MI+AY        AL L + M R G  P+ FT+S
Sbjct: 84  SGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFS 143

Query: 180 AVLRACDSLII-----LRQLHCGIIKVGFESDVFVRSALIDIYAKLGE---------LRN 225
           +VL A  SLI       + LHC +IK+G      V +AL+  Y              + +
Sbjct: 144 SVLSAL-SLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMAS 202

Query: 226 AECVFNEMP------------------------TRDL---------VVWNSIIGGFAQNS 252
           A  VF+E P                         R+L         V WN++I G+ +  
Sbjct: 203 ARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRG 262

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTG----LALLELGTQVHVHVL-------- 300
             +EA + ++RM   G   D+ T TS++ AC      + +   G QVH ++L        
Sbjct: 263 LYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSH 322

Query: 301 ---------------KYD--------------HDLILNNALLDMYCKCGSLEDAMSVFSR 331
                          KYD               D+I  NA+L  Y     +E+A S+FS 
Sbjct: 323 HFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSE 382

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           M +++V++W+ MISGLAQNG+ +E LKLF  MK   ++P      G + ACS  G +++G
Sbjct: 383 MPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNG 442

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
                 + +  G D G    + +I +  R G ++ A  +   MPY  D+V+W A++ A  
Sbjct: 443 QQIHSQVIRL-GHDSGLSAGNALITMYSRCGVVESAESVFLTMPY-VDSVSWNAMIAALA 500

Query: 452 VHRNTDLAICAAKKILNLD 470
            H +   AI   ++++  D
Sbjct: 501 QHGHGVKAIELFEQMMKED 519



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 25/205 (12%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            +K  + M+  G+      +A  I  C    +++  + +H+ V+  G +      N L+ 
Sbjct: 407 GLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALIT 466

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ +  ++E A+ +F  MP  + VSW  MI+A        KA+EL   M++E + P+  T
Sbjct: 467 MYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRIT 526

Query: 178 YSAVLRACDSLIILRQLHCGIIKVG---FES-----------DVFVRSALIDIYAKLGEL 223
           +  +L AC+        H G+IK G   F++           D + R  LID+  + G  
Sbjct: 527 FLTILTACN--------HAGLIKEGRHYFDTMCTRYGITPGEDHYAR--LIDLLCRAGMF 576

Query: 224 RNAECVFNEMPTR-DLVVWNSIIGG 247
             A+ V   MP      +W +++ G
Sbjct: 577 LKAQSVIKSMPFEAGAPIWEALLAG 601


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/592 (36%), Positives = 351/592 (59%), Gaps = 5/592 (0%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++   AM+  G+ A   T++ ++        +     VH  VL        F+ N LL
Sbjct: 219 QALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLL 278

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           + + K   L++ + LFD+MPER+ VS+  +I+AY   +     L L   M + G    + 
Sbjct: 279 DFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVL 338

Query: 177 TYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
            Y+ +L    SL    I +Q+H  ++ +G  S+  + +ALID+Y+K G L  A+  F+  
Sbjct: 339 PYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNR 398

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +  + W ++I G+ QN   +EAL L+  M+RAG   D++T +S+++A + LA++ LG 
Sbjct: 399 SEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGR 458

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+H ++++  Y   +   + L+DMY KCG L++A+  F  M +++ ISW+ +IS  A  G
Sbjct: 459 QLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYG 518

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
            ++ A+K+FE M      P+ +T + VL ACSH G  ++   +F  MK  Y I P +EHY
Sbjct: 519 EAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHY 578

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +C+ID LGR G   +  K++ EMP++ D + W ++L +C++H N +LA  AA K+  ++P
Sbjct: 579 ACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEP 638

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
            D   Y++LSNIYA + +W++ A V+K MR RG+ KE G SW+E+ ++I++F   D + P
Sbjct: 639 TDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSP 698

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
            ID+I   L  L +++   GY PD    L  ++ E K +S++YHSE+LAI F LM+   G
Sbjct: 699 MIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAG 758

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             IRI KNL  C DCH   K+ +K+ N+ I++RD  R+HHF+DG CSCGDYW
Sbjct: 759 TPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 170/345 (49%), Gaps = 16/345 (4%)

Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
           F +N++L+ +     L  AQ LF   P RN  +WT M+ A+  A     AL L   ML E
Sbjct: 75  FSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGE 134

Query: 170 GVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           GV P+  T + VL      +    LH   IK G ++ VFV + L+D Y K G L  A  V
Sbjct: 135 GVIPDRVTVTTVLNLPGCTV--PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRV 192

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F EM  +D V +N+++ G ++     +AL L+  M+RAG  A   T +S+L    G+A L
Sbjct: 193 FLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHL 252

Query: 290 ELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
            LG QVH  VL+     ++ +NN+LLD Y KC  L+D   +F  M ++D +S++ +I+  
Sbjct: 253 LLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAY 312

Query: 348 AQNGYSQEALKLFESMK---VSRIKPNYITIVGVLFACSHAGFVEDG--WNHFKSMKKFY 402
           A N  +   L+LF  M+     R    Y T++ V      AG + D        +     
Sbjct: 313 AWNQCAATVLRLFREMQKLGFDRQVLPYATMLSV------AGSLPDVHIGKQIHAQLVLL 366

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           G+       + +ID+  + G L +A K       E  A++W AL+
Sbjct: 367 GLASEDLLGNALIDMYSKCGML-DAAKSNFSNRSEKSAISWTALI 410



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 135/309 (43%), Gaps = 39/309 (12%)

Query: 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFES----DV 207
           DA+M     ++L + L  G+R                 +L   H    +  F+     ++
Sbjct: 31  DARMVKTGFDVLTYRLNLGLRS----------------LLSSGHLHRARAMFDQMPHKNI 74

Query: 208 FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
           F  + ++  Y+  G+L  A+ +F   P R+   W  ++   A      +AL+L++ M   
Sbjct: 75  FSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGE 134

Query: 268 GFAADQSTLTSVLR--ACTGLAL----LELGTQVHVHVLKYDHDLILNNALLDMYCKCGS 321
           G   D+ T+T+VL    CT  +L    ++ G   HV V          N LLD YCK G 
Sbjct: 135 GVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVC---------NTLLDAYCKHGL 185

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL-F 380
           L  A  VF  M  KD ++++ M+ G ++ G   +AL+LF +M+ + I   + T   +L  
Sbjct: 186 LAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTV 245

Query: 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
           A   A  +     H   ++    ++      + ++D   +   L +  +L  EMP E D 
Sbjct: 246 AAGMAHLLLGHQVHALVLRSTSVLNVFVN--NSLLDFYSKCDCLDDMRRLFDEMP-ERDN 302

Query: 441 VTWRALLGA 449
           V++  ++ A
Sbjct: 303 VSYNVIIAA 311


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/604 (37%), Positives = 355/604 (58%), Gaps = 12/604 (1%)

Query: 52  QRDLPRAMKAM-HAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Q   PR    + H M   GVR ++VT +  +  C A   +   + ++  + S   E ++ 
Sbjct: 110 QNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLNELIASEALEIDSH 169

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           + + L+ M+ +   +EEA+  FD+ PE++VV WT MISAY       +ALEL+  M  EG
Sbjct: 170 VESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDLEG 229

Query: 171 VRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFE-SDVFVRSALIDIYAKLGELRNA 226
           ++  + TY ++L AC S + LR     H     +G + S   V   L+++Y K G + +A
Sbjct: 230 IKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDA 289

Query: 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
             V + MP R  V W ++I  +AQN +  EA+NL++ M   G      TL SV+ +C  L
Sbjct: 290 RRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVL 349

Query: 287 ALLELGTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFS--RMIQKDVISWS 341
             L LG ++H  +     +   L+L NA++ MY KCG+LE A  VF    +  + V++W+
Sbjct: 350 GTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWT 409

Query: 342 TMISGLAQNGYSQEALKLFESMKV-SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
            MI   AQNG  +EA++LF+ M +    +PN +T + VL ACSH G +E  W HF SM  
Sbjct: 410 AMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAWEHFCSMGP 469

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLI-HEMPYEPDAVTWRALLGACKVHRNTDLA 459
            +G+ P  +HY C++DLLGRAG+L EA KL+     +E D V W A L AC+++ + + +
Sbjct: 470 DFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERS 529

Query: 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQ 519
             AAK++  L+P++    +LLSN+YA   +  +VA +R  M++ G+ K  G SWIE+N +
Sbjct: 530 QRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNR 589

Query: 520 IHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKL 579
           +H F V+D SHP+  +I   L+ L +++   GY PDT  VL+D++ E+K   + YHSE+L
Sbjct: 590 VHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKVQLLGYHSERL 649

Query: 580 AIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
           A+  G++S   G T+R+ KNLR+C DCH   K  +++  + I++RD  R+HHF+DG CSC
Sbjct: 650 AMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSC 709

Query: 640 GDYW 643
           GDYW
Sbjct: 710 GDYW 713



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 201/428 (46%), Gaps = 16/428 (3%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           YA L+  C     ++E + +H  + +   +  TFL N+L++ + K   L  AQ+ F ++ 
Sbjct: 38  YASLLWQC---RGLDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRIT 94

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS---LIILRQ 193
             N  SW  +++AY        A  L  +M  +GVRPN  T S  L AC +   L + R+
Sbjct: 95  LHNAHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRK 154

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           L+  I     E D  V S+LI +Y +  E+  AE  F+  P +D+V W ++I  +A N  
Sbjct: 155 LNELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWR 214

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD---LILNN 310
              AL L +RM   G      T  S+L AC     L  G   H        D    ++  
Sbjct: 215 TSRALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAG 274

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
            L+++Y KCG ++DA  V   M  +  +SW+ MI+  AQNG + EA+ LF+ M +   +P
Sbjct: 275 TLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEP 334

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           + IT++ V+ +C+  G +  G      ++            + +I + G+ G L+ A ++
Sbjct: 335 SDITLISVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREV 394

Query: 431 IHEMPYEPDA-VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS-- 487
              +P    + VTW A++ A   +   + AI   +++L     +P     LS + A S  
Sbjct: 395 FECVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHL 454

Query: 488 ----QKWD 491
               Q W+
Sbjct: 455 GQLEQAWE 462


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/595 (38%), Positives = 350/595 (58%), Gaps = 8/595 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           RA+     M   G + D+ TY  ++K C      E  + VH  V+ GG E + ++ N +L
Sbjct: 107 RALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSIL 166

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ KF  +E A+V+FD+M  R++ SW TM+S +        A E+   M R+G   +  
Sbjct: 167 SMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRT 226

Query: 177 TYSAVLRACDSLIILR---QLHCGIIKVGFESDV---FVRSALIDIYAKLGELRNAECVF 230
           T  A+L AC  ++ L+   ++H  +++ G    V   F+ +++ID+Y     +  A  +F
Sbjct: 227 TLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLF 286

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
             +  +D+V WNS+I G+ +  D  +AL L+ RM   G   D+ T+ SVL AC  ++ L 
Sbjct: 287 EGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALR 346

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
           LG  V  +V+K  Y  ++++  AL+ MY  CGSL  A  VF  M +K++ + + M++G  
Sbjct: 347 LGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFG 406

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
            +G  +EA+ +F  M    + P+      VL ACSH+G V++G   F  M + Y ++P  
Sbjct: 407 IHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRP 466

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
            HYSC++DLLGRAG L EA  +I  M  +P+   W ALL AC++HRN  LA+ +A+K+  
Sbjct: 467 THYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFE 526

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           L+P     Y+ LSNIYA  ++W++V  VR  +  R + K P  S++E+NK +H F V D+
Sbjct: 527 LNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDT 586

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
           SH Q D I   LK L ++L   GY PDT+ VL D+E E KE  +  HSE+LA+ F L++ 
Sbjct: 587 SHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINT 646

Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             G TIRI KNLR+CGDCHT  K+ +K+ N+ I++RD  R+HHF+DG CSCG YW
Sbjct: 647 GPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW 701



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 230/449 (51%), Gaps = 17/449 (3%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGG-FEPETFLVNILLNMHVKFSLLEEAQVL 131
           DS+    L++      ++ +A  +H HV +GG     T+L   L   +     +  AQ +
Sbjct: 21  DSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHI 80

Query: 132 FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL 191
           FDQ+  +N   W +MI  Y       +AL L + ML  G +P+ FTY  VL+AC  L++ 
Sbjct: 81  FDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLR 140

Query: 192 ---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
              R++H  ++  G E DV+V ++++ +Y K G++  A  VF+ M  RDL  WN+++ GF
Sbjct: 141 EMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGF 200

Query: 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH---- 304
            +N +   A  ++  M+R GF  D++TL ++L AC  +  L++G ++H +V++       
Sbjct: 201 VKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRV 260

Query: 305 -DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            +  L N+++DMYC C S+  A  +F  +  KDV+SW+++ISG  + G + +AL+LF  M
Sbjct: 261 CNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRM 320

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
            V    P+ +T++ VL AC+    +  G       +K+ Y ++      + +I +    G
Sbjct: 321 VVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVG--TALIGMYANCG 378

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL--NLDPQDPGTYILL 480
            L  A ++  EMP E +      ++    +H     AI    ++L   + P D G +  +
Sbjct: 379 SLVCACRVFDEMP-EKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTP-DEGIFTAV 436

Query: 481 SNIYANSQKWDEVAEVRKTMRARGITKEP 509
            +  ++S   DE  E+   M  R  + EP
Sbjct: 437 LSACSHSGLVDEGKEIFYKM-TRDYSVEP 464



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 29/209 (13%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D  +A++    M   G   D VT   ++  C    A+     V ++V+  G+     +  
Sbjct: 309 DAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGT 368

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L+ M+     L  A  +FD+MPE+N+ + T M++ +       +A+ +   ML +GV P
Sbjct: 369 ALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTP 428

Query: 174 NMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVR--------------SALIDIYAK 219
           +   ++AVL AC         H G++  G E  +F +              S L+D+  +
Sbjct: 429 DEGIFTAVLSACS--------HSGLVDEGKE--IFYKMTRDYSVEPRPTHYSCLVDLLGR 478

Query: 220 LGELRNAECVFNEM---PTRDLVVWNSII 245
            G L  A  V   M   P  D  VW +++
Sbjct: 479 AGYLDEAYAVIENMKLKPNED--VWTALL 505


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/616 (37%), Positives = 353/616 (57%), Gaps = 41/616 (6%)

Query: 66  QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL 125
           QC+    +  T+  LIK      ++   + +H   +      + F+ N L++ +     L
Sbjct: 128 QCY---PNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDL 184

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
           + A  +F  + E++VVSW +MI+ +      DKALEL   M  E V+ +  T   VL AC
Sbjct: 185 DSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSAC 244

Query: 186 DSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF------------ 230
             +  L   R++   I +     ++ + +A++D+Y K G + +A+ +F            
Sbjct: 245 AKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWT 304

Query: 231 -------------------NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK-RAGFA 270
                              N MP +D+V WN++I  + QN   +EAL ++  ++ +    
Sbjct: 305 TMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIK 364

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSV 328
            +Q TL S L AC  +  LELG  +H ++ K     +  + +AL+ MY KCG LE A  V
Sbjct: 365 LNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREV 424

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           F+ + ++DV  WS MI GLA +G   EA+ +F  M+ + +KPN +T   V  ACSH G V
Sbjct: 425 FNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLV 484

Query: 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
           ++  + F  M+  YGI P  +HY+C++D+LGR+G L++AVK I  MP  P    W ALLG
Sbjct: 485 DEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLG 544

Query: 449 ACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
           ACK+H N  LA  A  ++L L+P++ G ++LLSNIYA S KWD V+E+RK MR  G+ KE
Sbjct: 545 ACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKE 604

Query: 509 PGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQ- 567
           PGCS IE++  IH F   D++HP  +K+   L  +++KL   GY P+ ++VLQ +E E+ 
Sbjct: 605 PGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEM 664

Query: 568 KEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPI 627
           KE S+  HSEKLAI +GL+S    K IR+ KNLR+CGDCH  AKL +++ N+ I++RD  
Sbjct: 665 KEQSLNLHSEKLAICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRY 724

Query: 628 RYHHFQDGNCSCGDYW 643
           R+HHF++G CSC D+W
Sbjct: 725 RFHHFRNGQCSCNDFW 740



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 128/409 (31%), Positives = 203/409 (49%), Gaps = 49/409 (11%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQMPERNVVSWTTM 146
           ++ + K  H H++  G   + +  + L  +     F+ LE A+ +FD++P+ N  +W T+
Sbjct: 43  SLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTL 102

Query: 147 ISAYCDAKMNDKALELLIFM----LREGVRPNMFTYSAVLRAC---DSLIILRQLHCGII 199
           I AY  A   D    +  F+          PN +T+  +++A     SL + + LH   I
Sbjct: 103 IRAY--ASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAI 160

Query: 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN 259
           K    SDVFV ++LI  Y   G+L +A  VF  +  +D+V WNS+I GF Q    D+AL 
Sbjct: 161 KSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALE 220

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV--HVHVLKYDHDLILNNALLDMYC 317
           L+K+M+     A   T+  VL AC  +  LE G +V  ++   + + +L L NA+LDMY 
Sbjct: 221 LFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYT 280

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLA----------------------------- 348
           KCGS+EDA  +F  M +KD ++W+TM+ G A                             
Sbjct: 281 KCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISA 340

Query: 349 --QNGYSQEALKLFESMKVSR-IKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGI 404
             QNG   EAL +F  +++ + IK N IT+V  L AC+  G +E G W H  S  K  GI
Sbjct: 341 YEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIH--SYIKKNGI 398

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
                  S +I +  + G L++A ++ + +  + D   W A++G   +H
Sbjct: 399 KMNFYVTSALIHMYSKCGDLEKAREVFNSVE-KRDVFVWSAMIGGLAMH 446



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 154/299 (51%), Gaps = 12/299 (4%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRD 237
           +++  C SL  L+Q H  +I+ G  SD +  S L  I A      L  A  VF+E+P  +
Sbjct: 36  SLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPN 95

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRM--KRAGFAADQSTLTSVLRACTGLALLELGTQV 295
              WN++I  +A   D   ++  +  M    +    ++ T   +++A   ++ L LG  +
Sbjct: 96  SFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSL 155

Query: 296 HVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H   +K     D+ + N+L+  Y  CG L+ A  VF+ + +KDV+SW++MI+G  Q G  
Sbjct: 156 HGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSP 215

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
            +AL+LF+ M+   +K +++T+VGVL AC+    +E G     S  +   ++      + 
Sbjct: 216 DKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFG-RRVCSYIEENRVNVNLTLANA 274

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           M+D+  + G +++A +L   M  E D VTW  +L    +  + +    AA+++LN  P+
Sbjct: 275 MLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAISEDYE----AAREVLNAMPK 328



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 175/385 (45%), Gaps = 83/385 (21%)

Query: 40  SSLLDDFTRFCYQRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHN 98
           +S+++ F     Q+  P +A++    M+   V+A  VT   ++  C     +E  + V +
Sbjct: 203 NSMINGFV----QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCS 258

Query: 99  HVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
           ++          L N +L+M+ K   +E+A+ LFD M E++ V+WTTM+  Y  ++  + 
Sbjct: 259 YIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEA 318

Query: 159 ALE-----------------------------LLIF---MLREGVRPNMFTYSAVLRAC- 185
           A E                             LL+F    L++ ++ N  T  + L AC 
Sbjct: 319 AREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACA 378

Query: 186 --DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
              +L + R +H  I K G + + +V SALI +Y+K G+L  A  VFN +  RD+ VW++
Sbjct: 379 QVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSA 438

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD 303
           +IGG A +    EA++++ +M+ A    +  T T+V  AC+                   
Sbjct: 439 MIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACS------------------- 479

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRM-----IQKDVISWSTMISGLAQNGYSQEALK 358
                           G +++A S+F +M     I  +   ++ ++  L ++GY ++A+K
Sbjct: 480 --------------HTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVK 525

Query: 359 LFESMKVSRIKPNYITIVGVLF-AC 382
             E+M +    P   ++ G L  AC
Sbjct: 526 FIEAMPI----PPSTSVWGALLGAC 546


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/618 (36%), Positives = 364/618 (58%), Gaps = 32/618 (5%)

Query: 58   AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL-SGGFEPETFLVNILL 116
            A+  ++ M   GVR D VT A ++  C     +   + +H + L +G     +F+   L+
Sbjct: 518  ALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALV 577

Query: 117  NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNM 175
            +M+      ++ +++FD +  R V  W  +++ Y   + +D+AL L + M+ E    PN 
Sbjct: 578  DMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNA 637

Query: 176  FTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
             T+++VL AC    +      +H  I+K GF  D +V++AL+D+Y+++G +  ++ +F  
Sbjct: 638  TTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGR 697

Query: 233  MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR------------------AGFAADQS 274
            M  RD+V WN++I G       D+ALNL   M+R                    F  +  
Sbjct: 698  MNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSV 757

Query: 275  TLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRM 332
            TL +VL  C  LA L  G ++H + +K     D+ + +AL+DMY KCG L  A  VF +M
Sbjct: 758  TLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQM 817

Query: 333  IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR------IKPNYITIVGVLFACSHAG 386
              ++VI+W+ +I     +G  +EAL+LF  M          I+PN +T + +  ACSH+G
Sbjct: 818  PIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSG 877

Query: 387  FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV-TWRA 445
             V++G + F +MK  +G++P  +HY+C++DLLGR+G+++EA +LI+ MP   + V  W +
Sbjct: 878  MVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSS 937

Query: 446  LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
            LLGAC++H++ +    AAK +  L+P     Y+L+SNIY+++  WD+   VRK M+  G+
Sbjct: 938  LLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGV 997

Query: 506  TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
             KEPGCSWIE   ++H F   D+SHPQ  +++++L+ L Q++   GY PD + VL +++ 
Sbjct: 998  RKEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDD 1057

Query: 566  EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
            E+KE  +  HSE+LAI FGL++   G TIR+ KNLR+C DCH   K+ +K+ ++ I++RD
Sbjct: 1058 EEKETMLCGHSERLAIAFGLLNTPPGTTIRVAKNLRVCNDCHVATKIISKIVDREIILRD 1117

Query: 626  PIRYHHFQDGNCSCGDYW 643
              R+HHF +G CSCGDYW
Sbjct: 1118 VRRFHHFANGTCSCGDYW 1135



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 138/468 (29%), Positives = 231/468 (49%), Gaps = 28/468 (5%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPET--FLVNILLNMHVKFSLLEEAQV 130
           D+  +  ++K   A H +   K +H HV   G  P +   + N L+NM+ K   L  A+ 
Sbjct: 329 DNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQ 388

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---- 186
           +FD +P+R+ VSW +MI+  C  +  + +L L   ML E V P  FT  +V  AC     
Sbjct: 389 VFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRG 448

Query: 187 SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            + + +Q+H   ++ G +   +  +AL+ +YA+LG + +A+ +F     +DLV WN++I 
Sbjct: 449 GVRLGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVIS 507

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL 306
             +QN   +EAL     M   G   D  TL SVL AC+ L  L +G ++H + L+ + DL
Sbjct: 508 SLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALR-NGDL 566

Query: 307 ILNN----ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF-E 361
           I N+    AL+DMYC C   +    VF  ++++ V  W+ +++G A+N +  +AL+LF E
Sbjct: 567 IENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVE 626

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGR 420
            +  S   PN  T   VL AC       D    H   +K+ +G D  +   + ++D+  R
Sbjct: 627 MISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKD--KYVQNALMDMYSR 684

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480
            G++ E  K I     + D V+W  ++  C V    D A+    ++     +D       
Sbjct: 685 MGRV-EISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDG------ 737

Query: 481 SNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEV---NKQIHAFNV 525
           S+ + + +  D+     K      +T  PGC+ +      K+IHA+ V
Sbjct: 738 SDTFVDYE--DDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAV 783


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/605 (37%), Positives = 344/605 (56%), Gaps = 55/605 (9%)

Query: 94  KLVHNHVLSGGFEPETFLVNILLNM--HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
           K +H+  +  G      + N +L+     +F  +  A+ LFD +PE +V SW  M   Y 
Sbjct: 31  KQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYS 90

Query: 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVF 208
                   + L + ML   V+P+ +TY  + +     + L   R+LHC ++K G +S+VF
Sbjct: 91  RIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVF 150

Query: 209 VRSALIDIYA------------------------------------------------KL 220
             +ALI++Y+                                                  
Sbjct: 151 AHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNT 210

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           G++  A   F++MP RD V W ++I G+ + +   EAL L++ M+ +    D+ T+ SVL
Sbjct: 211 GQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVL 270

Query: 281 RACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
            AC  L  LELG  +  ++   K  +D  + NAL+DMY KCG++E A+S+F+ + Q+D  
Sbjct: 271 TACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKF 330

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
           +W+ M+ GLA NG  +EAL +F  M  + + P+ +T VGVL AC+H G V++G   F SM
Sbjct: 331 TWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASM 390

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
              +GI+P   HY CM+DLLG+AG L+EA ++I  MP +P+++ W ALLGAC++H++ ++
Sbjct: 391 TARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEM 450

Query: 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNK 518
           A  A ++IL L+P +   Y+L  NIYA   KWD++ E+R+ M  RGI K PGCS IE+N 
Sbjct: 451 AERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNG 510

Query: 519 QIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEK 578
            +H F   D SHPQ  +I   L  +   L   GY+P+T+ V  D+  E KE+++  HSEK
Sbjct: 511 IVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYRHSEK 570

Query: 579 LAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCS 638
           LAI FGL++   G TIRI KNLR+C DCH  AKL +K+ ++ +++RD  R+HHF+ G+CS
Sbjct: 571 LAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHFRHGSCS 630

Query: 639 CGDYW 643
           C DYW
Sbjct: 631 CKDYW 635



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 171/391 (43%), Gaps = 70/391 (17%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V+ D  TY  L K      A++  + +H HV+  G +   F  N L+NM+    L++ A+
Sbjct: 110 VKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMAR 169

Query: 130 VLFDQMPERNVVSWTTMISAY----------------------CDA------KMNDK--- 158
            +FD   + +VV+W  MIS Y                       DA      KM ++   
Sbjct: 170 GIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHV 229

Query: 159 -----------------ALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGI 198
                            AL L   M    ++P+ FT  +VL AC  L  L     +   I
Sbjct: 230 SWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYI 289

Query: 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEAL 258
            K   ++D FV +ALID+Y K G +  A  +FN +P RD   W +++ G A N   +EAL
Sbjct: 290 DKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEAL 349

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNA----LLD 314
           N++ +M +A    D+ T   VL ACT   +++ G +     +   H +  N A    ++D
Sbjct: 350 NMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFAS-MTARHGIEPNIAHYGCMVD 408

Query: 315 MYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-- 371
           +  K G L++A  +   M ++ + I W  ++     +  ++ A +  E  ++  ++PN  
Sbjct: 409 LLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIE--QILELEPNNG 466

Query: 372 --YITIVGVLFACSHAGFVEDGWNHFKSMKK 400
             Y+    +  AC       + W+  + +++
Sbjct: 467 AVYVLQCNIYAAC-------NKWDKLRELRQ 490



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 169/385 (43%), Gaps = 71/385 (18%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRD 237
           ++   C S+  L+Q+H   IK G   +  +++ ++      + G++  A  +F+ +P   
Sbjct: 19  SLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPS 78

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           +  WN +  G+++ +     ++LY  M       D  T   + +  T    L+LG ++H 
Sbjct: 79  VFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHC 138

Query: 298 HVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFS-----------------RMIQKDVI 338
           HV+KY  D ++  +NAL++MY  CG ++ A  +F                    I+KDVI
Sbjct: 139 HVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVI 198

Query: 339 SWSTMISGLAQNGY-------------------------------SQEALKLFESMKVSR 367
           SW+ +++G    G                                 +EAL LF  M+ S+
Sbjct: 199 SWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSK 258

Query: 368 IKPNYITIVGVLFACSHAGFVEDG-W-------NHFKSMKKFYGIDPGREHYSCMIDLLG 419
           IKP+  T+V VL AC+  G +E G W       N  K+   F G        + +ID+  
Sbjct: 259 IKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKN-DTFVG--------NALIDMYF 309

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD-PQDPGTYI 478
           + G ++ A+ + + +P + D  TW A++    ++   + A+    ++L      D  TY+
Sbjct: 310 KCGNVEMALSIFNTLP-QRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYV 368

Query: 479 LLSNIYANSQKWDEVAEVRKTMRAR 503
            + +   ++   DE  +   +M AR
Sbjct: 369 GVLSACTHTGMVDEGKKFFASMTAR 393



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 107/232 (46%), Gaps = 26/232 (11%)

Query: 40  SSLLDDFTRF-CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHN 98
           ++++D + R  CY+     A+     MQ   ++ D  T   ++  C    A+E  + +  
Sbjct: 232 TAMIDGYLRLNCYKE----ALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRT 287

Query: 99  HVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
           ++     + +TF+ N L++M+ K   +E A  +F+ +P+R+  +WT M+         ++
Sbjct: 288 YIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEE 347

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGII------------KVGFESD 206
           AL +   ML+  V P+  TY  VL AC         H G++            + G E +
Sbjct: 348 ALNMFSQMLKASVTPDEVTYVGVLSACT--------HTGMVDEGKKFFASMTARHGIEPN 399

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
           +     ++D+  K G L+ A  +   MP + + +VW +++G    + D + A
Sbjct: 400 IAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMA 451


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/609 (37%), Positives = 358/609 (58%), Gaps = 38/609 (6%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+  +S T+  L+K C    A  E + +H HVL  G + + ++   L+ M+VK    E+A
Sbjct: 98  GLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDA 157

Query: 129 -------------------------------QVLFDQMPERNVVSWTTMISAYCDAKMND 157
                                          Q +FD++P ++VVSW  +IS Y +     
Sbjct: 158 RKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYK 217

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALI 214
           +ALEL   M++  V+P+  T   VL AC    S+ + RQ+H  I   GF S++ + +ALI
Sbjct: 218 EALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALI 277

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           D+Y K GE+  A  +F  +  +D++ WN++IGG+   +   EAL L++ M R+G + ++ 
Sbjct: 278 DLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEV 337

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLK----YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
           T+ S+L AC  L  +++G  +HV++ K      +   L  +L+DMY KCG +E A  VF 
Sbjct: 338 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFD 397

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            M+ + + SW+ MI G A +G +  A  +F  M+   I+P+ IT VG+L ACSH+G ++ 
Sbjct: 398 SMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDL 457

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G + F+SM + Y I P  EHY CMIDLLG +G  +EA ++I+ M  +PD V W +LL AC
Sbjct: 458 GRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKAC 517

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
           K+H N +L    A+ ++ ++P++ G+Y+LLSNIYA + +W+EVA+ R  +  +G+ K PG
Sbjct: 518 KMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPG 577

Query: 511 CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKED 570
           CS IE++  +H F + D  HP+  +I   L+ +   L   G+ PDT+ VLQ++E E KE 
Sbjct: 578 CSSIEIDSVVHEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEG 637

Query: 571 SIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYH 630
           ++++HSEKLAI FGL+S   G  + I KNLR+C +CH   KL +K+  + I+ RD  R+H
Sbjct: 638 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFH 697

Query: 631 HFQDGNCSC 639
           HF DG CSC
Sbjct: 698 HFXDGVCSC 706



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 220/455 (48%), Gaps = 57/455 (12%)

Query: 66  QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL 125
            C  +++  + +A++IK  L       +KL+   VLS  F+  T+ +++           
Sbjct: 11  NCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISV----------- 59

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
                 FD + E N++ W TM   +  +     AL L + M+  G+ PN +T+  +L+AC
Sbjct: 60  ------FDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKAC 113

Query: 186 DSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN----------- 231
                 R   Q+H  ++K+G + D++V ++LI +Y K G   +A  VF+           
Sbjct: 114 AKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYT 173

Query: 232 --------------------EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
                               E+P +D+V WN++I G+A+  +  EAL L+K M +     
Sbjct: 174 ALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKP 233

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVF 329
           D+ST+ +VL AC   A +ELG QVH  +    +  +L + NAL+D+Y KCG +E A  +F
Sbjct: 234 DESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLF 293

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
             +  KDVISW+T+I G       +EAL LF+ M  S   PN +T++ +L AC+H G ++
Sbjct: 294 EGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAID 353

Query: 390 DG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
            G W H    K+  G+       + +ID+  + G ++ A ++   M       +W A++ 
Sbjct: 354 IGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIF 412

Query: 449 ACKVH--RNTDLAICAAKKILNLDPQDPGTYILLS 481
              +H   N    I +  +   ++P D     LLS
Sbjct: 413 GFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLS 447



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 179/378 (47%), Gaps = 38/378 (10%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A++    M    V+ D  T   ++  C    ++E  + VH+ +   GF     +VN L+
Sbjct: 218 EALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALI 277

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           ++++K   +E A  LF+ +  ++V+SW T+I  Y    +  +AL L   MLR G  PN  
Sbjct: 278 DLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEV 337

Query: 177 TYSAVLRAC---DSLIILRQLHCGIIK--VGFESDVFVRSALIDIYAKLGELRNAECVFN 231
           T  ++L AC    ++ I R +H  I K   G  +   +R++LID+YAK G++  A+ VF+
Sbjct: 338 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFD 397

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
            M  R L  WN++I GFA +   + A +++ RM++ G   D  T   +L AC+   +L+L
Sbjct: 398 SMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDL 457

Query: 292 GTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           G     H+ +         ++ + Y     LE                +  MI  L  +G
Sbjct: 458 GR----HIFR---------SMTEDYKITPKLEH---------------YGCMIDLLGHSG 489

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
             +EA ++  SM+   + P+ +    +L AC   G VE G +  +++ K    + G   Y
Sbjct: 490 LFKEAEEMINSME---MDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGS--Y 544

Query: 412 SCMIDLLGRAGKLQEAVK 429
             + ++   AG+  E  K
Sbjct: 545 VLLSNIYATAGRWNEVAK 562


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/593 (37%), Positives = 346/593 (58%), Gaps = 27/593 (4%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           R +     M   G+  D  T   ++  C     +   K VH+  +   FE      N LL
Sbjct: 234 RGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLL 293

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   L+ A  +F++M ERNVVSWT+MI+ Y     +D A++LL  M +EGV+ ++ 
Sbjct: 294 DMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVV 353

Query: 177 TYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
             +++L AC    SL   + +H  I     ES++FV +AL+D+YAK G +  A  VF+ M
Sbjct: 354 AITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTM 413

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +D++ WN++IG                         D  T+  VL AC  L+ LE G 
Sbjct: 414 VVKDIISWNTMIGELK---------------------PDSRTMACVLPACASLSALERGK 452

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           ++H ++L+  Y  D  + NAL+D+Y KCG L  A  +F  +  KD++SW+ MI+G   +G
Sbjct: 453 EIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHG 512

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           Y  EA+  F  M+ + I+P+ ++ + +L+ACSH+G +E GW  F  MK  + I+P  EHY
Sbjct: 513 YGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHY 572

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +CM+DLL R G L +A + +  +P  PDA  W ALL  C+ + + +LA   A+++  L+P
Sbjct: 573 ACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEP 632

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF-NVADSSH 530
           ++ G Y+LL+NIYA ++KW+EV  +R+ +  +G+ K PGCSWIE+  +++ F +  +SSH
Sbjct: 633 ENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSH 692

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           P    I   LK + +K+   G+ P T Y L + +  QKE ++  HSEKLA+ FGL++L  
Sbjct: 693 PHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPP 752

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KTIR+ KNLR+CGDCH  AK  +K   + IV+RD  R+HHF+DG CSC  +W
Sbjct: 753 RKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 142/539 (26%), Positives = 239/539 (44%), Gaps = 90/539 (16%)

Query: 13  KPSSQARQFSLTITP--PVASCNTITRNSSSLLDDFT----RFCYQRDLPRAMKAMHAMQ 66
           KPS + + FS   +   P+    T TR     + D+      FC   DL  AM+ +    
Sbjct: 34  KPSLKTKIFSPIFSSCIPIRISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELI--CM 91

Query: 67  CHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLS------------------------ 102
           C     ++ TY  +++ C    +  + K VH+ + S                        
Sbjct: 92  CQKSELETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLK 151

Query: 103 ---------------------------GGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
                                      G F+    L  I++   ++    E A  LFD++
Sbjct: 152 EGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKL 211

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILR 192
            +R+V+SW +MIS Y    + ++ L +   M+  G+  ++ T  +VL  C    +L + +
Sbjct: 212 CDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGK 271

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            +H   IK  FE  +   + L+D+Y+K G+L  A  VF +M  R++V W S+I G+ ++ 
Sbjct: 272 AVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDG 331

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNN 310
             D A+ L ++M++ G   D   +TS+L AC     L+ G  VH ++     + +L + N
Sbjct: 332 RSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCN 391

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           AL+DMY KCGS+E A SVFS M+ KD+ISW+TMI                       +KP
Sbjct: 392 ALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI---------------------GELKP 430

Query: 371 NYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           +  T+  VL AC+    +E G   H   ++  Y  D  R   + ++DL  + G L  A +
Sbjct: 431 DSRTMACVLPACASLSALERGKEIHGYILRNGYSSD--RHVANALVDLYVKCGVLGLA-R 487

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
           L+ +M    D V+W  ++    +H   + AI    ++ +   + P     +S +YA S 
Sbjct: 488 LLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIE-PDEVSFISILYACSH 545


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/593 (37%), Positives = 345/593 (58%), Gaps = 27/593 (4%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           R +     M   G+  D  T   ++  C     +   K VH+  +   FE      N LL
Sbjct: 234 RGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLL 293

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   L+ A  +F++M ERNVVSWT+MI+ Y     +D A+ LL  M +EGV+ ++ 
Sbjct: 294 DMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVV 353

Query: 177 TYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
             +++L AC    SL   + +H  I      S++FV +AL+D+YAK G +  A  VF+ M
Sbjct: 354 AITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTM 413

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +D++ WN+++G                         D  T+  +L AC  L+ LE G 
Sbjct: 414 VVKDIISWNTMVGELK---------------------PDSRTMACILPACASLSALERGK 452

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           ++H ++L+  Y  D  + NAL+D+Y KCG L  A  +F  +  KD++SW+ MI+G   +G
Sbjct: 453 EIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHG 512

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           Y  EA+  F  M+ + I+P+ ++ + +L+ACSH+G +E GW  F  MK  + I+P  EHY
Sbjct: 513 YGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHY 572

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +CM+DLL R G L +A K I  +P  PDA  W ALL  C+++ + +LA   A+++  L+P
Sbjct: 573 ACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEP 632

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF-NVADSSH 530
           ++ G Y+LL+NIYA ++K +EV  +R+ +  +G+ K PGCSWIE+  +++ F +  +SSH
Sbjct: 633 ENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSH 692

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           P   KI   LK + +K+   GY P T Y L + +  QKE ++  HSEKLA+ FGL++L  
Sbjct: 693 PHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPP 752

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KTIR+ KNLR+CGDCH  AK  +K   + IV+RD  R+HHF+DG CSC  +W
Sbjct: 753 RKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 142/539 (26%), Positives = 238/539 (44%), Gaps = 90/539 (16%)

Query: 13  KPSSQARQFSLTITP--PVASCNTITRNSSSLLDDFT----RFCYQRDLPRAMKAMHAMQ 66
           KPS +   FS       PV    T TR     + D+      FC   DL  AM+ +    
Sbjct: 34  KPSLKTTFFSPIFRSCIPVRISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELV--CM 91

Query: 67  CHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLS------------------------ 102
           C     ++ TY  +++ C    ++ + K VH+ + S                        
Sbjct: 92  CQKSELETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLK 151

Query: 103 ---------------------------GGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
                                      G F+    L  I++   ++    E A  LFD++
Sbjct: 152 EGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKL 211

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILR 192
            +R+V+SW +MIS Y    + ++ L +   M+  G+  ++ T  +VL  C    +L + +
Sbjct: 212 CDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGK 271

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            +H   IK  FE  +   + L+D+Y+K G+L  A  VF +M  R++V W S+I G+ ++ 
Sbjct: 272 AVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDG 331

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNN 310
             D A+ L ++M++ G   D   +TS+L AC     L+ G  VH ++   +   +L + N
Sbjct: 332 WSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCN 391

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           AL+DMY KCGS+E A SVFS M+ KD+ISW+TM                     V  +KP
Sbjct: 392 ALMDMYAKCGSMEGANSVFSTMVVKDIISWNTM---------------------VGELKP 430

Query: 371 NYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           +  T+  +L AC+    +E G   H   ++  Y  D  R   + ++DL  + G L  A +
Sbjct: 431 DSRTMACILPACASLSALERGKEIHGYILRNGYSSD--RHVANALVDLYVKCGVLGLA-R 487

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
           L+ +M    D V+W  ++    +H   + AI    ++ +   + P     +S +YA S 
Sbjct: 488 LLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIE-PDEVSFISILYACSH 545


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/700 (33%), Positives = 376/700 (53%), Gaps = 82/700 (11%)

Query: 20  QFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAE 79
           Q SLT++  +      +   SSL+  F R       P  +     +    +  D+     
Sbjct: 55  QLSLTLSSHLPHPTLFSF--SSLIHAFAR---SHHFPHVLTTFSHLHPLRLIPDAFLLPS 109

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139
            IK C +  A++  + +H    + GF  ++ + + L +M++K   + +A+ LFD+MP+R+
Sbjct: 110 AIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRD 169

Query: 140 VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA--------------- 184
           VV W+ MI+ Y    + ++A EL   M   GV PN+ +++ +L                 
Sbjct: 170 VVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFR 229

Query: 185 -----------------------CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
                                   + +++  Q+H  +IK G  SD FV SA++D+Y K G
Sbjct: 230 MMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCG 289

Query: 222 ELRNAECVFNEMPTRDL-----------------------------------VVWNSIIG 246
            ++    VF+E+   ++                                   V W SII 
Sbjct: 290 CVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIA 349

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---YD 303
             +QN    EAL L++ M+  G   +  T+ S++ AC  ++ L  G ++H   L+   +D
Sbjct: 350 SCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFD 409

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D+ + +AL+DMY KCG ++ A   F +M   +++SW+ ++ G A +G ++E +++F  M
Sbjct: 410 -DVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMM 468

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
             S  KP+ +T   VL AC+  G  E+GW  + SM + +GI+P  EHY+C++ LL R GK
Sbjct: 469 LQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGK 528

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L+EA  +I EMP+EPDA  W ALL +C+VH N  L   AA+K+  L+P +PG YILLSNI
Sbjct: 529 LEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNI 588

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           YA+   WDE   +R+ M+++G+ K PG SWIEV  ++H     D SHPQ+  I + L  L
Sbjct: 589 YASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKL 648

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
             ++   GY P TN+VLQD+E + KE  +  HSEKLA+V GL++ + G+ +++ KNLRIC
Sbjct: 649 NMQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRIC 708

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            DCH   K+ +++E + I +RD  R+HHF+DG CSCGD+W
Sbjct: 709 DDCHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 115/238 (48%), Gaps = 6/238 (2%)

Query: 187 SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE---CVFNEMPTRDLVVWNS 243
           SL   RQ H  I+++   SD  + ++L+  YA    L   +    + + +P   L  ++S
Sbjct: 15  SLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSS 74

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-- 301
           +I  FA++      L  +  +       D   L S +++C  L  L+ G Q+H       
Sbjct: 75  LIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASG 134

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
           +  D I+ ++L  MY KC  + DA  +F RM  +DV+ WS MI+G ++ G  +EA +LF 
Sbjct: 135 FLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFG 194

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
            M+   ++PN ++  G+L    + GF ++    F+ M    G  P     SC++  +G
Sbjct: 195 EMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFR-MMLVQGFWPDGSTVSCVLPAVG 251


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/554 (39%), Positives = 335/554 (60%), Gaps = 5/554 (0%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           DL ++ +    MQ  G+R +  TY  +++ C     ++  + +H+  +  GFE + ++  
Sbjct: 325 DLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSG 384

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
           +L++M+ K+  LE+A+ + + + E++VVSWT+MI+ Y   +    AL     M + G+ P
Sbjct: 385 VLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWP 444

Query: 174 NMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +    ++ +  C  +  +RQ   +H  I   G+  DV + +AL+++YA+ G +R A   F
Sbjct: 445 DNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSF 504

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
            E+  +D + WN ++ GFAQ+   +EAL ++ RM ++G   +  T  S L A   LA ++
Sbjct: 505 EEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIK 564

Query: 291 LGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G Q+H  V+K  H  +  + NAL+ +Y KCGS EDA   FS M +++ +SW+T+I+  +
Sbjct: 565 QGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCS 624

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           Q+G   EAL LF+ MK   IKPN +T +GVL ACSH G VE+G ++FKSM   YGI P  
Sbjct: 625 QHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRP 684

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           +HY+C+ID+ GRAG+L  A K I EMP   DA+ WR LL ACKVH+N ++   AAK +L 
Sbjct: 685 DHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLE 744

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           L+P D  +Y+LLSN YA ++KW    +VRK MR RG+ KEPG SWIEV   +HAF V D 
Sbjct: 745 LEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDR 804

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
            HP  ++I   L  +  ++  VGY  +  ++  D E E ++ +   HSEKLA+ FGLMSL
Sbjct: 805 LHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSL 864

Query: 589 TQGKTIRIRKNLRI 602
                +R+ KNLR+
Sbjct: 865 PPCMPLRVIKNLRV 878



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/404 (31%), Positives = 216/404 (53%), Gaps = 13/404 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    MQ  G+  D VT + L+  C +   +++   +H+++   G   +  +   LL+
Sbjct: 228 ALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLD 287

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND--KALELLIFMLREGVRPNM 175
           ++VK   +E A V+F+     NVV W  M+ A+   ++ND  K+ EL   M   G+RPN 
Sbjct: 288 LYVKCGDVETALVIFNSSDRTNVVLWNLMLVAF--GQINDLAKSFELFCQMQAAGIRPNQ 345

Query: 176 FTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           FTY  +LR C     + +  Q+H   +K GFESD++V   LID+Y+K G L  A  V   
Sbjct: 346 FTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEM 405

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           +  +D+V W S+I G+ Q+    +AL  +K M++ G   D   L S +  C G+  +  G
Sbjct: 406 LKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQG 465

Query: 293 TQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
            Q+H  ++V  Y  D+ + NAL+++Y +CG + +A S F  +  KD I+W+ ++SG AQ+
Sbjct: 466 LQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQS 525

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGRE 409
           G  +EALK+F  M  S +K N  T V  L A ++   ++ G   H + +K  +  +   E
Sbjct: 526 GLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFET--E 583

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             + +I L G+ G  ++A     EM  E + V+W  ++ +C  H
Sbjct: 584 VGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQH 626



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 202/376 (53%), Gaps = 7/376 (1%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H   ++ G      + N+L++++ K  L+  A+ +F+++  R+ VSW  M+S Y    +
Sbjct: 64  IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGL 123

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSA 212
            ++AL L   M R GV P  +  S+VL +C    +  Q   +H    K GF S++FV +A
Sbjct: 124 GEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNA 183

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           +I +Y + G  R AE VF +MP RD V +N++I G AQ    + AL +++ M+ +G + D
Sbjct: 184 VITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPD 243

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
             T++S+L AC  L  L+ GTQ+H ++ K     D I+  +LLD+Y KCG +E A+ +F+
Sbjct: 244 CVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFN 303

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
              + +V+ W+ M+    Q     ++ +LF  M+ + I+PN  T   +L  C+    ++ 
Sbjct: 304 SSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDL 363

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G     S+    G +        +ID+  + G L++A +++ EM  E D V+W +++   
Sbjct: 364 G-EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMIAGY 421

Query: 451 KVHRNTDLAICAAKKI 466
             H     A+ A K++
Sbjct: 422 VQHECCKDALAAFKEM 437



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/396 (28%), Positives = 203/396 (51%), Gaps = 9/396 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M   GV       + ++  C       + +L+H      GF  E F+ N ++ 
Sbjct: 127 ALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVIT 186

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++++      A+ +F  MP R+ V++ T+IS +      + ALE+   M   G+ P+  T
Sbjct: 187 LYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVT 246

Query: 178 YSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            S++L AC SL  L+   QLH  + K G  SD  +  +L+D+Y K G++  A  +FN   
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSD 306

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             ++V+WN ++  F Q +D+ ++  L+ +M+ AG   +Q T   +LR CT    ++LG Q
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQ 366

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H   +K  ++ D+ ++  L+DMY K G LE A  V   + +KDV+SW++MI+G  Q+  
Sbjct: 367 IHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEC 426

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHY 411
            ++AL  F+ M+   I P+ I +   +  C+    +  G   H +     Y  D     +
Sbjct: 427 CKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDV--SIW 484

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           + +++L  R G+++EA     E+ ++ D +TW  L+
Sbjct: 485 NALVNLYARCGRIREAFSSFEEIEHK-DEITWNGLV 519



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 158/321 (49%), Gaps = 8/321 (2%)

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS----LII 190
           M  R   S    ++ +   +   K L L     R+        ++  LRAC        +
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQV 60

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           + ++H   +  G      V + LID+Y+K G +  A  VF E+  RD V W +++ G+AQ
Sbjct: 61  VPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQ 120

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLIL 308
           N   +EAL LY++M RAG       L+SVL +CT   L   G  +H    K+    ++ +
Sbjct: 121 NGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFV 180

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            NA++ +Y +CGS   A  VF  M  +D ++++T+ISG AQ G+ + AL++FE M+ S +
Sbjct: 181 GNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGL 240

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
            P+ +TI  +L AC+  G ++ G      + K  GI         ++DL  + G ++ A+
Sbjct: 241 SPDCVTISSLLAACASLGDLQKGTQLHSYLFK-AGISSDYIMEGSLLDLYVKCGDVETAL 299

Query: 429 KLIHEMPYEPDAVTWRALLGA 449
            +I       + V W  +L A
Sbjct: 300 -VIFNSSDRTNVVLWNLMLVA 319


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/587 (38%), Positives = 341/587 (58%), Gaps = 39/587 (6%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
           +H   ++ G   + F+ + +L+         +  A+ LF ++ + ++    T+I AY  +
Sbjct: 54  IHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAFS 113

Query: 154 KMNDKALELLIFMLREGVR-PNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFV 209
                A+     M    V  P++ T+  +L+AC  +  LR    +H  + K+G+ S+V V
Sbjct: 114 PNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSV 173

Query: 210 RSALIDIYAKLGEL--------RNAEC-----------------------VFNEMPTRDL 238
            + L+ +YA  G +        R  EC                       +F  MP RD+
Sbjct: 174 SNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDV 233

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           V W+ +I G+ Q S   E L L++ M       ++S L + L AC  L  +E G  +  +
Sbjct: 234 VSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERY 293

Query: 299 VLKYDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           + + +  L   L  AL+DMY KCGS+E A+ VF +M +K+V++WS MI+GLA NG  ++A
Sbjct: 294 MERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDA 353

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           L LF  M++  +KPN +T +G+L ACSH+  V++G + F SM   YG+ P   H+ CM+D
Sbjct: 354 LNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVD 413

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476
           L GRAG L +A  +I  MP++P++  W ALL AC++H +T+L     K++L LDP   G 
Sbjct: 414 LYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGR 473

Query: 477 YILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKI 536
           Y+LLSNIYA   +WD VAE+R+ MR R ++K PGCS+I++   IH F   DSSHPQ++ I
Sbjct: 474 YVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMI 533

Query: 537 NKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRI 596
              L  + Q+L   GY PDT  VL D++ E+KE ++ +HSEKLAI FGL+    G TIRI
Sbjct: 534 YAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAIAFGLIKTDPGTTIRI 593

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KNLR+C DCH+  KL +K+ N+ I++RD  R+HHF+DG+CSC D+W
Sbjct: 594 TKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 160/356 (44%), Gaps = 46/356 (12%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V  D  T+  L+K C    ++   + +H+HV   G+  E  + N L+ M+    L+E A 
Sbjct: 132 VFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAG 191

Query: 130 VLFDQ-------------------------------MPERNVVSWTTMISAYCDAKMNDK 158
           ++FD+                               MP+R+VVSW+ MI+ Y       +
Sbjct: 192 LVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKE 251

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALID 215
            L L   M+ E + PN       L AC  L  + Q   +   + +      V + +ALID
Sbjct: 252 GLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALID 311

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           +Y+K G +  A  VF++M  ++++ W+++I G A N    +ALNL+ +M+  G   ++ T
Sbjct: 312 MYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVT 371

Query: 276 LTSVLRACTGLALLELGTQVHVHVLKYDHDLILNN----ALLDMYCKCGSLEDAMSVFSR 331
              +L AC+   L++ G     H +   + L  N      ++D+Y + G L+ A +V   
Sbjct: 372 FIGILNACSHSKLVDEGCSF-FHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKS 430

Query: 332 M-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN----YITIVGVLFAC 382
           M  + +   W  +++    +G ++   ++    ++  + PN    Y+ +  +  AC
Sbjct: 431 MPFKPNSAIWGALLNACRIHGDTELGEQV--GKRLLELDPNHGGRYVLLSNIYAAC 484


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/540 (40%), Positives = 328/540 (60%), Gaps = 7/540 (1%)

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
           P+    N LL+ H     ++ A  +F  MP R+V SW TM+S        + A+E    M
Sbjct: 70  PDAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLS----KNGAIEEAEAM 125

Query: 167 LREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
            R     N  +++A++ A  S   +            ++D  + +A++  Y   G ++ A
Sbjct: 126 FRAMPARNAVSWNAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKA 185

Query: 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTG 285
              F  MP R+LV WN+++ G+ +NS   +AL ++K M + A    + STL+SVL  C+ 
Sbjct: 186 MEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSN 245

Query: 286 LALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L+ L  G QVH   +K      + +  +LL MYCKCG L+DA  +F  M  KD+++W+ M
Sbjct: 246 LSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAM 305

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           ISG AQ+G  ++A+KLFE MK   + P++IT++ VL AC H G  + G   F++M++ Y 
Sbjct: 306 ISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYN 365

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           I+P  +HYSCM+DLL RAG L+ AV +IH MP+EP    +  LL AC+V++N + A  AA
Sbjct: 366 IEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAA 425

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
           +K++  DPQ+ G Y+ L+NIYA + +WD+V+ VR+ M+   + K PG SW+E+    H F
Sbjct: 426 RKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEF 485

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
              D  HPQ+D I+  L  L + +  +GY+PD ++ L D+E   K   +  HSEKLAI F
Sbjct: 486 RSNDRLHPQLDLIHDKLDRLGKLMKAMGYSPDLDFALHDVEESLKSQMLMRHSEKLAIAF 545

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GL+S + G T+RI KNLRICGDCH  AKL +K+E++ I++RD  R+HHF+ G+CSCGDYW
Sbjct: 546 GLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 605


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/554 (39%), Positives = 335/554 (60%), Gaps = 5/554 (0%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           DL ++ +    MQ  G+R +  TY  +++ C     ++  + +H+  +  GFE + ++  
Sbjct: 325 DLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSG 384

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
           +L++M+ K+  LE+A+ + + + E++VVSWT+MI+ Y   +    AL     M + G+ P
Sbjct: 385 VLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWP 444

Query: 174 NMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +    ++ +  C  +  +RQ   +H  I   G+  DV + +AL+++YA+ G +R A   F
Sbjct: 445 DNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSF 504

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
            E+  +D + WN ++ GFAQ+   +EAL ++ RM ++G   +  T  S L A   LA ++
Sbjct: 505 EEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIK 564

Query: 291 LGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G Q+H  V+K  H  +  + NAL+ +Y KCGS EDA   FS M +++ +SW+T+I+  +
Sbjct: 565 QGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCS 624

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           Q+G   EAL LF+ MK   IKPN +T +GVL ACSH G VE+G ++FKSM   YGI P  
Sbjct: 625 QHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRP 684

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           +HY+C+ID+ GRAG+L  A K I EMP   DA+ WR LL ACKVH+N ++   AAK +L 
Sbjct: 685 DHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLE 744

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           L+P D  +Y+LLSN YA ++KW    +VRK MR RG+ KEPG SWIEV   +HAF V D 
Sbjct: 745 LEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDR 804

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
            HP  ++I   L  +  ++  VGY  +  ++  D E E ++ +   HSEKLA+ FGLMSL
Sbjct: 805 LHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSL 864

Query: 589 TQGKTIRIRKNLRI 602
                +R+ KNLR+
Sbjct: 865 PPCMPLRVIKNLRV 878



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/404 (31%), Positives = 216/404 (53%), Gaps = 13/404 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    MQ  G+  D VT + L+  C +   +++   +H+++   G   +  +   LL+
Sbjct: 228 ALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLD 287

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND--KALELLIFMLREGVRPNM 175
           ++VK   +E A V+F+     NVV W  M+ A+   ++ND  K+ EL   M   G+RPN 
Sbjct: 288 LYVKCGDVETALVIFNSSDRTNVVLWNLMLVAF--GQINDLAKSFELFCQMQAAGIRPNQ 345

Query: 176 FTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           FTY  +LR C     + +  Q+H   +K GFESD++V   LID+Y+K G L  A  V   
Sbjct: 346 FTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEM 405

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           +  +D+V W S+I G+ Q+    +AL  +K M++ G   D   L S +  C G+  +  G
Sbjct: 406 LKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQG 465

Query: 293 TQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
            Q+H  ++V  Y  D+ + NAL+++Y +CG + +A S F  +  KD I+W+ ++SG AQ+
Sbjct: 466 LQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQS 525

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGRE 409
           G  +EALK+F  M  S +K N  T V  L A ++   ++ G   H + +K  +  +   E
Sbjct: 526 GLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFET--E 583

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             + +I L G+ G  ++A     EM  E + V+W  ++ +C  H
Sbjct: 584 VGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQH 626



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 202/376 (53%), Gaps = 7/376 (1%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H   ++ G      + N+L++++ K  L+  A+ +F+++  R+ VSW  M+S Y    +
Sbjct: 64  IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGL 123

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSA 212
            ++AL L   M R GV P  +  S+VL +C    +  Q   +H    K GF S++FV +A
Sbjct: 124 GEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNA 183

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           +I +Y + G  R AE VF +MP RD V +N++I G AQ    + AL +++ M+ +G + D
Sbjct: 184 VITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPD 243

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
             T++S+L AC  L  L+ GTQ+H ++ K     D I+  +LLD+Y KCG +E A+ +F+
Sbjct: 244 CVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFN 303

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
              + +V+ W+ M+    Q     ++ +LF  M+ + I+PN  T   +L  C+    ++ 
Sbjct: 304 SSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDL 363

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G     S+    G +        +ID+  + G L++A +++ EM  E D V+W +++   
Sbjct: 364 G-EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMIAGY 421

Query: 451 KVHRNTDLAICAAKKI 466
             H     A+ A K++
Sbjct: 422 VQHECCKDALAAFKEM 437



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/396 (28%), Positives = 203/396 (51%), Gaps = 9/396 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M   GV       + ++  C       + +L+H      GF  E F+ N ++ 
Sbjct: 127 ALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVIT 186

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++++      A+ +F  MP R+ V++ T+IS +      + ALE+   M   G+ P+  T
Sbjct: 187 LYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVT 246

Query: 178 YSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            S++L AC SL  L+   QLH  + K G  SD  +  +L+D+Y K G++  A  +FN   
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSD 306

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             ++V+WN ++  F Q +D+ ++  L+ +M+ AG   +Q T   +LR CT    ++LG Q
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQ 366

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H   +K  ++ D+ ++  L+DMY K G LE A  V   + +KDV+SW++MI+G  Q+  
Sbjct: 367 IHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEC 426

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHY 411
            ++AL  F+ M+   I P+ I +   +  C+    +  G   H +     Y  D     +
Sbjct: 427 CKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDV--SIW 484

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           + +++L  R G+++EA     E+ ++ D +TW  L+
Sbjct: 485 NALVNLYARCGRIREAFSSFEEIEHK-DEITWNGLV 519



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 158/321 (49%), Gaps = 8/321 (2%)

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS----LII 190
           M  R   S    ++ +   +   K L L     R+        ++  LRAC        +
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQV 60

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           + ++H   +  G      V + LID+Y+K G +  A  VF E+  RD V W +++ G+AQ
Sbjct: 61  VPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQ 120

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLIL 308
           N   +EAL LY++M RAG       L+SVL +CT   L   G  +H    K+    ++ +
Sbjct: 121 NGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFV 180

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            NA++ +Y +CGS   A  VF  M  +D ++++T+ISG AQ G+ + AL++FE M+ S +
Sbjct: 181 GNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGL 240

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
            P+ +TI  +L AC+  G ++ G      + K  GI         ++DL  + G ++ A+
Sbjct: 241 SPDCVTISSLLAACASLGDLQKGTQLHSYLFK-AGISSDYIMEGSLLDLYVKCGDVETAL 299

Query: 429 KLIHEMPYEPDAVTWRALLGA 449
            +I       + V W  +L A
Sbjct: 300 -VIFNSSDRTNVVLWNLMLVA 319


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/453 (44%), Positives = 307/453 (67%), Gaps = 3/453 (0%)

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H  +I+ GF S ++V+++L+ +YA  G++ +A  VF++MP +DLV WNS+I GFA+N  
Sbjct: 10  IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 69

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNA 311
            +EAL LY  M   G   D  T+ S+L AC  +  L LG +VHV+++K     +L  +N 
Sbjct: 70  PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNV 129

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR-IKP 370
           LLD+Y +CG +E+A ++F  M+ K+ +SW+++I GLA NG+ +EA++LF+ M+ +  + P
Sbjct: 130 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLP 189

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
             IT VG+L+ACSH G V++G+ +F+ M++ Y I+P  EH+ CM+DLL RAG++++A + 
Sbjct: 190 CEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEY 249

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
           I  MP +P+ V WR LLGAC VH ++DLA  A  +IL L+P   G Y+LLSN+YA+ Q+W
Sbjct: 250 IKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRW 309

Query: 491 DEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGV 550
            +V ++RK M   G+ K PG S +EV  ++H F + D SHPQ D I   LK +  +L   
Sbjct: 310 SDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSE 369

Query: 551 GYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFA 610
           GY P  + V  D+E E+KE+++ YHSEK+AI F L+S  +   I + KNLR+C DCH   
Sbjct: 370 GYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAI 429

Query: 611 KLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KL +K+ N+ IV+RD  R+HHF++G+CSC DYW
Sbjct: 430 KLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 462



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 156/291 (53%), Gaps = 10/291 (3%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
           V   + +H+ V+  GF    ++ N LL+++     +  A  +FD+MPE+++V+W ++I+ 
Sbjct: 4   VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 63

Query: 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESD 206
           + +    ++AL L   M  +G++P+ FT  ++L AC    +L + +++H  +IKVG   +
Sbjct: 64  FAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRN 123

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
           +   + L+D+YA+ G +  A+ +F+EM  ++ V W S+I G A N    EA+ L+K M+ 
Sbjct: 124 LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMES 183

Query: 267 A-GFAADQSTLTSVLRACTGLALLELGTQVHVHV---LKYDHDLILNNALLDMYCKCGSL 322
             G    + T   +L AC+   +++ G +    +    K +  +     ++D+  + G +
Sbjct: 184 TEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQV 243

Query: 323 EDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           + A      M +Q +V+ W T++     +G S   L  F  +++ +++PN+
Sbjct: 244 KKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD--LAEFARIQILQLEPNH 292



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 22/207 (10%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   G++ D  T   L+  C    A+   K VH +++  G        N+LL+++ +   
Sbjct: 80  MNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGR 139

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM-LREGVRPNMFTYSAVLR 183
           +EEA+ LFD+M ++N VSWT++I          +A+EL  +M   EG+ P   T+  +L 
Sbjct: 140 VEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILY 199

Query: 184 ACDSLIILRQLHCGIIKVGFESDVFVR------------SALIDIYAKLGELRNAECVFN 231
           AC         HCG++K GFE    +R              ++D+ A+ G+++ A     
Sbjct: 200 ACS--------HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIK 251

Query: 232 EMPTR-DLVVWNSIIGGFAQNSDVDEA 257
            MP + ++V+W +++G    + D D A
Sbjct: 252 SMPMQPNVVIWRTLLGACTVHGDSDLA 278


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/580 (38%), Positives = 339/580 (58%), Gaps = 5/580 (0%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+  DS T A ++        +     +    +  GF    +++  L  ++ K   +E A
Sbjct: 202 GIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETA 261

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN---MFTYSAVLRAC 185
           ++LF Q+ + ++VS+  MIS Y      + ++ L   +L  G + N   +     V    
Sbjct: 262 RLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPF 321

Query: 186 DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             L + R +H    K G  S+  V +AL  +Y++L E+ +A  +F+E   + L  WN++I
Sbjct: 322 GHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMI 381

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYD 303
            G+AQN   ++A++L++ M++     +  T+TS+L AC  L  L LG  VH  ++   ++
Sbjct: 382 SGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFE 441

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            ++ ++ AL+DMY KCGS+ +A  +FS M +K+ ++W+ MISG   +GY  EAL LF  M
Sbjct: 442 SNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEM 501

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
             SR+ P  +T + VL+ACSHAG V +G   F+SM   +G +P  EHY+CM+DLLGRAG 
Sbjct: 502 LHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGN 561

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L +A+  I +MP EP    W ALLGAC +H++ +LA  A+ K+  LDPQ+ G Y+LLSNI
Sbjct: 562 LDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNI 621

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           Y+  Q + E A VR  ++ R + K PGC+ IEV   +H F   D SHPQ   I   L+ L
Sbjct: 622 YSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKL 681

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
             K+   G+  +T   L D+E E+KE  ++ HSEKLAI FGL++   G  IRI KNLR+C
Sbjct: 682 TGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVC 741

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            DCH   K  +K+  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 742 LDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 213/484 (44%), Gaps = 51/484 (10%)

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H  ++  G   +   V  L +       +++A +LF  +P  ++  +  +I A+      
Sbjct: 30  HAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSP 89

Query: 157 DKALELLIFMLREG-VRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALID 215
             A+ L   + +   + P+ FTY+ V+    SL +   LH   I  GF SD+FV SA++ 
Sbjct: 90  SSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHSIVAGFGSDLFVGSAIVA 149

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
            Y K   +  A  VF+ M  RD V+WN+++ G  +NS  DEA+ ++  M + G   D +T
Sbjct: 150 CYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTT 209

Query: 276 LTSVLRACTGLALLELGTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           + +VL     L  L LG  +    +K   + H  ++   L  +Y KCG +E A  +F ++
Sbjct: 210 VAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVI-TGLACLYSKCGEIETARLLFGQI 268

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG---VLFACSHA---- 385
            Q D++S++ MISG   N  ++ +++LF+ + VS  K N  +IVG   V F   H     
Sbjct: 269 GQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTR 328

Query: 386 ---GF------------------VEDGWNHFKSMKKFYGIDPGRE----HYSCMIDLLGR 420
              GF                  V    N  +S +  +  D   E     ++ MI    +
Sbjct: 329 CIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLF--DESSEKSLASWNAMISGYAQ 386

Query: 421 AGKLQEAVKLIHEM---PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
            G  ++A+ L  EM      P+ VT  ++L AC        A+   K + +L  ++    
Sbjct: 387 NGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLG----ALSLGKWVHDLINRES--- 439

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRA-RGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKI 536
              SNI+ ++   D  A+      A R  +  P  + +  N  I  + +    H  ++  
Sbjct: 440 -FESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLF 498

Query: 537 NKHL 540
           N+ L
Sbjct: 499 NEML 502



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 5/206 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+     MQ   VR + VT   ++  C    A+   K VH+ +    FE   F+   L+
Sbjct: 392 KAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALI 451

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   + EAQ LF  MPE+N V+W  MIS Y       +AL L   ML   V P   
Sbjct: 452 DMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGV 511

Query: 177 TYSAVLRACDSLIILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           T+ +VL AC    ++R+        +   GFE      + ++D+  + G L  A     +
Sbjct: 512 TFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRK 571

Query: 233 MPTR-DLVVWNSIIGGFAQNSDVDEA 257
           MP      VW +++G    + D + A
Sbjct: 572 MPVEPGPPVWGALLGACMIHKDANLA 597


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/577 (38%), Positives = 342/577 (59%), Gaps = 35/577 (6%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           +R D  T+  ++K C     + + + +H      GF+   F+   L++M+ +F     A+
Sbjct: 114 IRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIAR 170

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            LFD MP R++ SW  MIS         +AL++L  M  EG++ N  T  ++L       
Sbjct: 171 SLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSIL------- 223

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
                                   +D+YAKLG L +A  VF  +P +D++ WN++I G+A
Sbjct: 224 ---------------------PVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYA 262

Query: 250 QNSDVDEALNLYKRMKRAG-FAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDL 306
           QN    EA+ +YK M+       +Q T  S+L A   +  L+ G ++H  V+K +   D+
Sbjct: 263 QNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDV 322

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
            +   L+D+Y KCG L DAMS+F ++ Q+  ++W+ +IS    +G++++ LKLF  M   
Sbjct: 323 FVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDE 382

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
            +KP+++T V +L ACSH+GFVE+G   F+ M++ YGI P  +HY CM+DLLGRAG L+ 
Sbjct: 383 GVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEM 441

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           A   I +MP +PDA  W ALLGAC++H N +L   A+ ++  +D ++ G Y+LLSNIYAN
Sbjct: 442 AYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYAN 501

Query: 487 SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
             KW+ V +VR   R RG+ K PG S IEVN+++  F   + SHP+  +I + L+ L  K
Sbjct: 502 VGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAK 561

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           +  +GY PD ++VLQD+E ++KE  +  HSE+LAI FG++S      IRI KNLR+CGDC
Sbjct: 562 MKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDC 621

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           H   K  +++  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 622 HNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 126/427 (29%), Positives = 225/427 (52%), Gaps = 41/427 (9%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
           AK +H  ++  G     F+   L+N++     +  ++  FDQ+P+++V +W +MISAY  
Sbjct: 35  AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVH 94

Query: 153 AKMNDKALELLI-FMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRS 211
                +A+      +L   +RP+ +T+  VL+AC +L+  R++HC   K+GF+ +VFV +
Sbjct: 95  NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAA 154

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
           +LI +Y++ G    A  +F++MP RD+  WN++I G  QN +  +AL++   M+  G   
Sbjct: 155 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKM 214

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
           +  T+ S+L                                +DMY K G L+ A  VF  
Sbjct: 215 NFVTVVSILP-----------------------------VFVDMYAKLGLLDSAHKVFEI 245

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVED 390
           +  KDVISW+T+I+G AQNG + EA+++++ M +   I PN  T V +L A +H G ++ 
Sbjct: 246 IPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQ 305

Query: 391 GWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           G   H + +K    +D      +C+ID+ G+ G+L +A+ L +++P E  +VTW A++  
Sbjct: 306 GMKIHGRVIKTNLHLDVFVA--TCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAIISC 362

Query: 450 CKVHRNTDLAICAAKKILN--LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT- 506
             +H + +  +    ++L+  + P D  T++ L +  ++S   +E     + M+  GI  
Sbjct: 363 HGIHGHAEKTLKLFGEMLDEGVKP-DHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKP 421

Query: 507 --KEPGC 511
             K  GC
Sbjct: 422 SLKHYGC 428



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 98/220 (44%), Gaps = 30/220 (13%)

Query: 66  QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL 125
           +C  +  +  T+  ++       A+++   +H  V+      + F+   L++++ K   L
Sbjct: 279 ECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRL 338

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
            +A  LF Q+P+ + V+W  +IS +      +K L+L   ML EGV+P+  T+ ++L AC
Sbjct: 339 VDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSAC 398

Query: 186 DSLIILRQLHCGII-----------KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
                    H G +           + G +  +     ++D+  + G L  A     +MP
Sbjct: 399 S--------HSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMP 450

Query: 235 TR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
            + D  +W +++G          A  ++  ++   FA+D+
Sbjct: 451 LQPDASIWGALLG----------ACRIHGNIELGKFASDR 480


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/597 (38%), Positives = 352/597 (58%), Gaps = 20/597 (3%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE----------TFLVNI 114
           MQ H +R ++ T   L+     + A+ +   VH + +     P             L   
Sbjct: 104 MQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTA 163

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV--- 171
           LL+M+ K   L  A+ +FD MP RN V+W+ +I  +       +A  L   ML +G+   
Sbjct: 164 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL 223

Query: 172 RPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
            P   + ++ LRAC SL  LR   QLH  + K G  +D+   ++L+ +YAK G +  A  
Sbjct: 224 SPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIA 281

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           +F+EM  +D V +++++ G+ QN   +EA  ++K+M+      D +T+ S++ AC+ LA 
Sbjct: 282 LFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAA 341

Query: 289 LELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           L+ G   H  V+      +  + NAL+DMY KCG ++ +  VF+ M  +D++SW+TMI+G
Sbjct: 342 LQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAG 401

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
              +G  +EA  LF  M      P+ +T + +L ACSH+G V +G + F  M   YG+ P
Sbjct: 402 YGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTP 461

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
             EHY CM+DLL R G L EA + I  MP   D   W ALLGAC+V++N DL    ++ I
Sbjct: 462 RMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMI 521

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
             L P+  G ++LLSNIY+ + ++DE AEVR   + +G  K PGCSWIE+N  +HAF   
Sbjct: 522 QELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGG 581

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D SHPQ  +I + L +++  +  +GY PDT++VLQDLE E+KE ++  HSEKLAI +G++
Sbjct: 582 DQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGIL 641

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           SL++ KTI + KNLR+CGDCHT  K  + ++ + I++RD  R+HHF++G CSCGD+W
Sbjct: 642 SLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/432 (29%), Positives = 217/432 (50%), Gaps = 21/432 (4%)

Query: 68  HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           H V  ++ T+   +K C A       + +H H +  G + + F+   LL+M+VK + L +
Sbjct: 4   HRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPD 63

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE--GVRPNMFTYSAVLRAC 185
           A  +F  MP R++V+W  M++ Y    M   A+  L+ M  +   +RPN  T  A+L   
Sbjct: 64  AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLL 123

Query: 186 DSLIILRQ---LHCGIIKVGFESD----------VFVRSALIDIYAKLGELRNAECVFNE 232
                L Q   +H   I+     +          V + +AL+D+YAK G L  A  VF+ 
Sbjct: 124 AQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 183

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLRACTGLALLEL 291
           MP R+ V W+++IGGF   S + +A  L+K M   G      +++ S LRAC  L  L +
Sbjct: 184 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRM 243

Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G Q+H  + K     DL   N+LL MY K G ++ A+++F  M  KD +S+S ++SG  Q
Sbjct: 244 GEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQ 303

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           NG ++EA  +F+ M+   ++P+  T+V ++ ACSH   ++ G     S+    G+     
Sbjct: 304 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSV-IIRGLASETS 362

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
             + +ID+  + G++  + ++ + MP   D V+W  ++    +H     A     ++ NL
Sbjct: 363 ICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHGLGKEATALFLEMNNL 421

Query: 470 D-PQDPGTYILL 480
             P D  T+I L
Sbjct: 422 GFPPDGVTFICL 433



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 192/433 (44%), Gaps = 50/433 (11%)

Query: 166 MLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           MLR  V PN +T+   L+AC +L      R +H   I  G ++D+FV +AL+D+Y K   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN--LYKRMKRAGFAADQSTLTSVL 280
           L +A  +F  MP RDLV WN+++ G+A +     A+   L  +M+      + STL ++L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 281 RACTGLALLELGTQVHVHVL------------KYDHDLILNNALLDMYCKCGSLEDAMSV 328
                   L  GT VH + +            K    ++L  ALLDMY KCGSL  A  V
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM---KVSRIKPNYITIVGVLFACSHA 385
           F  M  ++ ++WS +I G        +A  LF++M    +  + P   +I   L AC+  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASL 238

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
             +  G     ++    G+       + ++ +  +AG + +A+ L  EM  + D V++ A
Sbjct: 239 DHLRMG-EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSA 296

Query: 446 LLGACKVHRNTDLAICAAKKI--LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503
           L+     +   + A    KK+   N++P D  T + L    ++            ++  R
Sbjct: 297 LVSGYVQNGRAEEAFLVFKKMQACNVEP-DAATMVSLIPACSHLAALQHGRCSHGSVIIR 355

Query: 504 GITKEPG-----------CSWIEVNKQIHAFNVADS----------SHPQIDKINKHLKH 542
           G+  E             C  I++++Q+  FN+  S          +   I  + K    
Sbjct: 356 GLASETSICNALIDMYAKCGRIDLSRQV--FNMMPSRDIVSWNTMIAGYGIHGLGKEATA 413

Query: 543 LIQKLVGVGYAPD 555
           L  ++  +G+ PD
Sbjct: 414 LFLEMNNLGFPPD 426


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/571 (37%), Positives = 343/571 (60%), Gaps = 6/571 (1%)

Query: 78  AELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE 137
           A  I  C ++  VE  K  H + L  G E   ++ N L+ ++ K S +  A  +   +P 
Sbjct: 128 ATAISSCDSQMYVE-GKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPG 186

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQL 194
            ++  +  +++         +A+++L  ++ EG+  N  TY  + R C SL    + +Q+
Sbjct: 187 NDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQV 246

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
           H  ++K   + DV++ S++ID+Y K G + +    F+ + +R++V W SII  + QN   
Sbjct: 247 HAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFF 306

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNAL 312
           +EALNL+ +M+      ++ T+  +  +  GL+ L LG Q+H    K     ++++ NAL
Sbjct: 307 EEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGNAL 366

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           + MY K G +  A SVFS M   ++I+W+ +I+G + +G  +EAL +F+ M  +  +PNY
Sbjct: 367 IIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMATGERPNY 426

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           +T +GV+ AC+H   V++G+ +F  + K + I PG EHY+C++ LL R+G+L EA   + 
Sbjct: 427 VTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGRLDEAENFMR 486

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
                 D V+WR LL AC VH++ D     A+ +L L+P+D GTYILLSN++A  ++WD 
Sbjct: 487 SHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLSNMHARVRRWDH 546

Query: 493 VAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGY 552
           V E+RK MR R + KEPG SW+E+    H F   D  HP+ + I +++K L+ K+  +GY
Sbjct: 547 VVEIRKLMRERNVKKEPGVSWLEIRNVAHVFTSEDIKHPEANLIYENVKDLLSKIRPLGY 606

Query: 553 APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
            PD + VL D+E EQK D++ YHSEKLA+ +GLM    G  I + KNLR+C DCHT  KL
Sbjct: 607 VPDIDNVLHDIEDEQKVDNLSYHSEKLAVAYGLMKTPSGAPITVIKNLRMCDDCHTAIKL 666

Query: 613 TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +K+ N+ IV+RD  R+HHFQ+G CSCGDYW
Sbjct: 667 ISKVANRVIVVRDANRFHHFQNGCCSCGDYW 697



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 87/274 (31%), Positives = 158/274 (57%), Gaps = 6/274 (2%)

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM-LREG 170
           +N L+N++VK   +  A+ LFD MP RNVVSW+ +++ Y       +  EL   M +++ 
Sbjct: 60  LNSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDN 119

Query: 171 VRPNMFTYSAVLRACDSLIIL--RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
           + PN +  +  + +CDS + +  +Q H   +K G E   +V++ALI +Y+K  ++  A  
Sbjct: 120 IFPNEYVIATAISSCDSQMYVEGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQ 179

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           +   +P  D+  +N ++ G  Q++ + EA+++ K +   G   + +T  ++ R C  L  
Sbjct: 180 ILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKD 239

Query: 289 LELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           + LG QVH  +LK   D D+ + ++++DMY KCG++    + F R+  ++V+SW+++I+ 
Sbjct: 240 ITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAA 299

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
             QN + +EAL LF  M++  I PN  T+  VLF
Sbjct: 300 YFQNEFFEEALNLFSKMEIDCIPPNEYTM-AVLF 332



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 177/369 (47%), Gaps = 21/369 (5%)

Query: 49  FCY---------QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           FCY            +  A+  +  +   G+  ++ TY  + + C +   +   K VH  
Sbjct: 190 FCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQ 249

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           +L    + + ++ + +++M+ K   +   +  FD++  RNVVSWT++I+AY   +  ++A
Sbjct: 250 MLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEA 309

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDI 216
           L L   M  + + PN +T + +  +   L  L    QLH    K G + +V V +ALI +
Sbjct: 310 LNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGNALIIM 369

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           Y K G++  A+ VF+ M   +++ WN+II G + +    EAL++++ M   G   +  T 
Sbjct: 370 YFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMATGERPNYVTF 429

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDH---DLILNNALLDMYCKCGSLEDAMSVF-SRM 332
             V+ AC  L L++ G     H++K       L     ++ +  + G L++A +   S  
Sbjct: 430 IGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGRLDEAENFMRSHQ 489

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
           I  DV+SW T+++    + +  +  K+ E +   +++P  +    +L +  HA      W
Sbjct: 490 INWDVVSWRTLLNACYVHKHYDKGRKIAEYLL--QLEPRDVGTY-ILLSNMHARVRR--W 544

Query: 393 NHFKSMKKF 401
           +H   ++K 
Sbjct: 545 DHVVEIRKL 553



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 120/249 (48%), Gaps = 6/249 (2%)

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
           +S V   ++LI++Y K  E+  A  +F+ MP R++V W++++ G+ QN +  E   L+K+
Sbjct: 54  DSKVNQLNSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKK 113

Query: 264 M-KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCG 320
           M  +     ++  + + + +C     +E G Q H + LK   +    + NAL+ +Y KC 
Sbjct: 114 MVVKDNIFPNEYVIATAISSCDSQMYVE-GKQCHGYALKSGLEFHQYVKNALIQLYSKCS 172

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
            +  A+ +   +   D+  ++ +++GL Q+ +  EA+ + + +    I+ N  T V +  
Sbjct: 173 DVGAAIQILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFR 232

Query: 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
            C+    +  G      M K   ID      S +ID+ G+ G +         +    + 
Sbjct: 233 LCASLKDITLGKQVHAQMLK-SDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQ-SRNV 290

Query: 441 VTWRALLGA 449
           V+W +++ A
Sbjct: 291 VSWTSIIAA 299



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 89/179 (49%), Gaps = 9/179 (5%)

Query: 264 MKRAGF-AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH---DLILN--NALLDMYC 317
           + R+ F A+       +L+       L+ G  +H H+   +H   D  +N  N+L+++Y 
Sbjct: 9   LSRSNFLASPHQDPIKLLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYV 68

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV-SRIKPNYITIV 376
           KC  +  A  +F  M +++V+SWS +++G  QNG   E  +LF+ M V   I PN   I 
Sbjct: 69  KCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIA 128

Query: 377 GVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435
             + +C    +VE    H  ++K   G++  +   + +I L  +   +  A+++++ +P
Sbjct: 129 TAISSCDSQMYVEGKQCHGYALKS--GLEFHQYVKNALIQLYSKCSDVGAAIQILYTVP 185



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/348 (19%), Positives = 139/348 (39%), Gaps = 44/348 (12%)

Query: 36  TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL 95
           +RN  S       +        A+     M+   +  +  T A L        A+     
Sbjct: 287 SRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQ 346

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H      G +    + N L+ M+ K   +  AQ +F  M   N+++W  +I+ +    +
Sbjct: 347 LHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGL 406

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALID 215
             +AL +   M+  G RPN  T+  V+ AC         H  ++  GF    +  + L+ 
Sbjct: 407 GKEALSMFQDMMATGERPNYVTFIGVILAC--------AHLKLVDEGF----YYFNHLMK 454

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
            +  +  L +  C               I+G  +++  +DEA N    M+      D  +
Sbjct: 455 QFRIVPGLEHYTC---------------IVGLLSRSGRLDEAENF---MRSHQINWDVVS 496

Query: 276 LTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALL-DMYCKCGSLEDAMSVFSRMIQ 334
             ++L AC      + G ++  ++L+ +   +    LL +M+ +    +  + +   M +
Sbjct: 497 WRTLLNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLSNMHARVRRWDHVVEIRKLMRE 556

Query: 335 KDV-----ISWSTMISGLAQNGYSQ-----EALKLFESMK--VSRIKP 370
           ++V     +SW   I  +A    S+     EA  ++E++K  +S+I+P
Sbjct: 557 RNVKKEPGVSW-LEIRNVAHVFTSEDIKHPEANLIYENVKDLLSKIRP 603


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 244/678 (35%), Positives = 371/678 (54%), Gaps = 81/678 (11%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEE-AKLVHNHVLSGGF 105
           T + +  D   A++   AM+    R D  T+  ++   +     E+    +H  V+  G 
Sbjct: 120 TGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGM 179

Query: 106 E-PETFLVNILLNMHVK--------FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
               + ++N LL+++VK         S +  A+ LFD+MP+R+ ++WTTMI+ Y      
Sbjct: 180 GCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDL 239

Query: 157 DKALELLIFMLRE-------------------------------GVRPNMFTYSAVLRAC 185
           + A E+   M+                                 G++ +  TY+ ++ AC
Sbjct: 240 NGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISAC 299

Query: 186 ---DSLIILRQLHCGIIKVGFESD----VFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
               S  + +Q+H  I+K     +    + V +ALI +Y K  ++  A  +F  MP R++
Sbjct: 300 ANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNI 359

Query: 239 VVWNSIIGGF-------------------------------AQNSDVDEALNLYKRMKRA 267
           + WN+I+ G+                               AQN   DE L L+K+M+  
Sbjct: 360 ITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLD 419

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDA 325
           GF          L AC+ L  LE G Q+H  +  L Y+  L + NA++ MY KCG +E A
Sbjct: 420 GFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAA 479

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
            SVF  M   D++SW++MI+ L Q+G+  +A++LF+ M    + P+ IT + VL ACSHA
Sbjct: 480 ESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHA 539

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G VE G ++F SM + YGI P  +HY+ M+DL  RAG    A  +I  MP +P A  W A
Sbjct: 540 GLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEA 599

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LL  C++H N DL I AA+++  L PQ+ GTY+LLSNIYA+  +W+EVA+VRK MR + +
Sbjct: 600 LLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAV 659

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            KEP CSWIEV  ++H F V D  HP++  + ++L+ L  ++  +GY PDT +VL D+E 
Sbjct: 660 RKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEY 719

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           EQKE ++  HSEKLA+ FG+M L  G T+R+ KN+RICGDCH   K  +K+  + I++RD
Sbjct: 720 EQKEHALSTHSEKLAVGFGIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRD 779

Query: 626 PIRYHHFQDGNCSCGDYW 643
             R+HHF++G+CSC DYW
Sbjct: 780 RKRFHHFKNGDCSCRDYW 797



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 134/503 (26%), Positives = 221/503 (43%), Gaps = 124/503 (24%)

Query: 70  VRADSVTYAELIKCCLARH--AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           +R  +  YAE ++ C  +   +   A+ VH H+++ GF+P    +N LL M+ K S L  
Sbjct: 7   IRLLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVY 66

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAK---------------MNDK-------------- 158
           A+ LF+++P  + ++ TT+I+AYC                  M D               
Sbjct: 67  ARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNG 126

Query: 159 ----ALELLIFMLREGVRPNMFTYSAVLRACDSLIIL-------RQLHCGIIKVGFES-D 206
               ALEL   M R+  RP+ FT+++VL A   L++         Q+HC ++K G     
Sbjct: 127 DGHSALELFRAMRRDDFRPDDFTFTSVLSA---LVLFVGNEQQCGQMHCAVVKTGMGCVS 183

Query: 207 VFVRSALIDIYAKLGELRNAEC--------VFNEMPTRDLVVWNSIIGGFAQNSDVD--- 255
             V +AL+ +Y K        C        +F+EMP RD + W ++I G+ +N D++   
Sbjct: 184 SSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAR 243

Query: 256 ----------------------------EALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
                                       EAL L ++M+  G   D  T T+++ AC  + 
Sbjct: 244 EVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVG 303

Query: 288 LLELGTQVHVHVLKYDHD------LILNNALLDMYCK----------------------- 318
             ++G QVH ++LK + +      L ++NAL+ +YCK                       
Sbjct: 304 SFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWN 363

Query: 319 --------CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
                    G +E+A S F  M  K++++ + MISGLAQNG+  E LKLF+ M++   +P
Sbjct: 364 AILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEP 423

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
                 G L ACS  G +E+G     +     G +      + MI +  + G ++ A  +
Sbjct: 424 CDFAFAGALTACSVLGALENG-RQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESV 482

Query: 431 IHEMPYEPDAVTWRALLGACKVH 453
              MP   D V+W +++ A   H
Sbjct: 483 FVTMP-SVDLVSWNSMIAALGQH 504


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/604 (37%), Positives = 363/604 (60%), Gaps = 16/604 (2%)

Query: 48  RFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           RF Y+R        +H++      A+  +    +K C++   +E  +L+H  V+      
Sbjct: 13  RFLYRRRFLSQSSFVHSLD-----ANVSSLIAAVKSCVS---IELCRLLHCKVVKSVSYR 64

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
             F+ + L+  +++      A+ LFD+MPER++VSW ++IS Y       K  E+L  M+
Sbjct: 65  HGFIGDQLVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMM 124

Query: 168 --REGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
               G RPN  T+ +++ AC    S    R +H  ++K G   +V V +A I+ Y K G+
Sbjct: 125 ISEVGFRPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGD 184

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           L ++  +F ++  ++LV WN++I    QN   ++ L  +   +R G   DQ+T  +VLR+
Sbjct: 185 LTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRS 244

Query: 283 CTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           C  + ++ L   +H  ++   +  +  +  ALLD+Y K G LED+ +VF  +   D ++W
Sbjct: 245 CEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAW 304

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           + M++  A +G+ ++A+K FE M    I P+++T   +L ACSH+G VE+G ++F++M K
Sbjct: 305 TAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSK 364

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            Y IDP  +HYSCM+DLLGR+G LQ+A  LI EMP EP +  W ALLGAC+V+++T L  
Sbjct: 365 RYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGT 424

Query: 461 CAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQI 520
            AA+++  L+P+D   Y++LSNIY+ S  W + + +R  M+ +G+ +  GCS+IE   +I
Sbjct: 425 KAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKI 484

Query: 521 HAFNVADSSHPQIDKINKHLKHLIQKLVG-VGYAPDTNYVLQDLEGEQKEDSIQYHSEKL 579
           H F V D SHP+ +KI K LK + +K+   +GY   T +VL D+  + KE+ I  HSEK+
Sbjct: 485 HKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKI 544

Query: 580 AIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
           A+ FGL+ ++  + I IRKNLRICGDCH  AK  + +E + I+IRD  R+HHF DG+CSC
Sbjct: 545 AMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSC 604

Query: 640 GDYW 643
            DYW
Sbjct: 605 SDYW 608


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/590 (39%), Positives = 335/590 (56%), Gaps = 35/590 (5%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++    MQ  G  +   T+  ++  C     ++  K +H  +++       F+ N L 
Sbjct: 138 QALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALT 197

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           NM+ K   L++A+ LFD+M  +NVVSW +MIS Y      +   +L   M   G+ P+  
Sbjct: 198 NMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQV 257

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           T S +L A                                Y + G +  A   F E+  +
Sbjct: 258 TISNILSA--------------------------------YFQCGYIDEACKTFREIKEK 285

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           D V W +++ G AQN   ++AL L++ M       D  T++SV+ +C  LA L  G  VH
Sbjct: 286 DKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVH 345

Query: 297 VHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
              + +  DHDL++++AL+DMY KCG   DA  VF RM+ ++VISW++MI G AQNG   
Sbjct: 346 GKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDL 405

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414
           EAL L+E M    +KP+ IT VGVL AC HAG VE G  +F S+ K +G++P  +HYSCM
Sbjct: 406 EALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCM 465

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474
           I+LLGRAG + +AV LI  M +EP+ + W  LL  C+++ + +    AA+ +  LDP + 
Sbjct: 466 INLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNA 525

Query: 475 GTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQID 534
           G YI+LSNIYA   +W +VA VR  M+   I K    SWIE++ Q+H F   D +H + +
Sbjct: 526 GPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETE 585

Query: 535 KINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT- 593
           +I + L  LI+KL   G+ PDTN VL D+  E+K DSI YHSEKLA+ F L+    G+T 
Sbjct: 586 QIYEELNRLIKKLQESGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFWLIKKPHGRTP 645

Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           IRI KN+R+CGDCH F K  +K+  + I++RD  R+HHF +G CSC D W
Sbjct: 646 IRIMKNIRVCGDCHVFMKFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 140/533 (26%), Positives = 230/533 (43%), Gaps = 123/533 (23%)

Query: 56  PRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP-ETFLVNI 114
           PR  +A+ A+   G  A+S +Y  L+  C+  + V +AK +  H+    ++P +TFL N 
Sbjct: 5   PRLREAIDALYSRGT-ANSESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNR 63

Query: 115 LLNMHVK-------------------FSL------------LEEAQVLFDQMPERNVVSW 143
           LL+++ K                   FS             +E+ + +FDQM   + VS+
Sbjct: 64  LLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSY 123

Query: 144 TTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIK 200
            T+I+ +     + +ALE  + M  EG     +T+ +VL AC  L+ +   +Q+H  I+ 
Sbjct: 124 NTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVA 183

Query: 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNL 260
                 VFV +AL ++YAK G L  A  +F+ M  +++V WNS+I G+ QN   +    L
Sbjct: 184 TSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKL 243

Query: 261 YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCG 320
           +  M+ +G   DQ T++++L A                                 Y +CG
Sbjct: 244 FCEMQSSGLMPDQVTISNILSA---------------------------------YFQCG 270

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
            +++A   F  + +KD + W+TM+ G AQNG  ++AL LF  M +  ++P+  TI  V+ 
Sbjct: 271 YIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVS 330

Query: 381 AC-----------------------------------SHAGFVEDGWNHFKSMKKFYGID 405
           +C                                   S  G   D W  FK M     I 
Sbjct: 331 SCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVIS 390

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE---PDAVTWRALLGACK----VHRNTDL 458
                ++ MI    + GK  EA+ L  EM +E   PD +T+  +L AC     V R    
Sbjct: 391 -----WNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGY 445

Query: 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGC 511
              +  KI  ++P     Y  + N+   +   D+  ++ K+M     T EP C
Sbjct: 446 -FYSISKIHGMNPT-FDHYSCMINLLGRAGYMDKAVDLIKSM-----TFEPNC 491


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/604 (36%), Positives = 354/604 (58%), Gaps = 7/604 (1%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105
            T F        A++  + +Q   ++ D V+   +I        +   K +H + +  GF
Sbjct: 233 LTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGF 292

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           +    + N L++M+ K   +      FD M  ++++SWTT  + Y   K   +ALELL  
Sbjct: 293 DSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQ 352

Query: 166 MLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           +  EG+  +     ++L AC  L  L   +++H   I+ G  SD  +++ +ID+Y + G 
Sbjct: 353 LQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGL-SDPVLQNTIIDVYGECGI 411

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           +  A  +F  +  +D+V W S+I  +  N   ++AL ++  MK  G   D  TL S+L A
Sbjct: 412 IDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSA 471

Query: 283 CTGLALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
              L+ L+ G ++H  +++    L   ++N L+DMY +CGS+EDA  +F+    +++I W
Sbjct: 472 VCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILW 531

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           + MIS    +GY + A++LF  MK  +I P++IT + +L+ACSH+G V +G +  + MK 
Sbjct: 532 TAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKC 591

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            Y ++P  EHY+C++DLLGR   L+EA +++  M  EP    W ALLGAC++H N ++  
Sbjct: 592 EYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGE 651

Query: 461 CAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQI 520
            AA+K+L LD  +PG Y+L+SN++A + +W +V EVR  M+  G+TK PGCSWIEV  +I
Sbjct: 652 VAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKI 711

Query: 521 HAFNVADSSHPQIDKINKHLKHLIQKLV-GVGYAPDTNYVLQDLEGEQKEDSIQYHSEKL 579
           HAF   D  HP+ DKI + L  + +KL    GY   T +VL ++  E+K   +  HSE+L
Sbjct: 712 HAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEEKVQMLYGHSERL 771

Query: 580 AIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
           AI +GL++  +G  IR+ KNLR+CGDCH+F  L ++   + +++RD  R+HHF+DG CSC
Sbjct: 772 AIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDASRFHHFKDGMCSC 831

Query: 640 GDYW 643
           GD+W
Sbjct: 832 GDFW 835



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 135/442 (30%), Positives = 230/442 (52%), Gaps = 31/442 (7%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+  GV  DS T+  L+K C     +     +H   +  G +   F+VN L+ 
Sbjct: 42  ALEMYREMRHLGVSFDSYTFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVA 101

Query: 118 MHVKFSLLEEAQVLFDQMPERN-VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           ++ K + +  A+ LFD+M  RN VVSW ++ISAY    M  +AL L   ML+ GV  N +
Sbjct: 102 LYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTY 161

Query: 177 TYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T++A L+AC+    ++   Q+H  I+K G   DV+V +AL+ +Y + G++  A  +F  +
Sbjct: 162 TFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNL 221

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +D+V WNS++ GF QN    EAL  +  ++ A    DQ ++ S++ A   L  L  G 
Sbjct: 222 EGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGK 281

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           ++H + +K  +D ++++ N L+DMY KC  +      F  M  KD+ISW+T  +G AQN 
Sbjct: 282 EIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNK 341

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI------- 404
              +AL+L   +++  +  +   I  +L AC        G N    +K+ +G        
Sbjct: 342 CYLQALELLRQLQMEGMDVDATMIGSILLACR-------GLNCLGKIKEIHGYTIRGGLS 394

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR---NTDLAIC 461
           DP  ++   +ID+ G  G +  AV++   +  + D V+W +++ +C VH    N  L + 
Sbjct: 395 DPVLQN--TIIDVYGECGIIDYAVRIFESIECK-DVVSWTSMI-SCYVHNGLANKALEVF 450

Query: 462 AAKKILNLDPQDPGTYILLSNI 483
           ++ K   L+P     Y+ L +I
Sbjct: 451 SSMKETGLEPD----YVTLVSI 468



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 161/283 (56%), Gaps = 12/283 (4%)

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   + +A+++FD+M ER++ +W  M+  Y        ALE+   M   GV  + +T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 178 YSAVLRACDSLIILRQLHCG------IIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
           +  +L+AC    I+  L CG       IK G +S VFV ++L+ +YAK  ++  A  +F+
Sbjct: 61  FPVLLKACG---IVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFD 117

Query: 232 EMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
            M  R D+V WNSII  ++ N    EAL L+  M +AG   +  T  + L+AC   + ++
Sbjct: 118 RMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIK 177

Query: 291 LGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
           LG Q+H  +LK     D+ + NAL+ MY + G + +A  +F  +  KD+++W++M++G  
Sbjct: 178 LGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFI 237

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           QNG   EAL+ F  ++ + +KP+ ++I+ ++ A    G++ +G
Sbjct: 238 QNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNG 280



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 124/236 (52%), Gaps = 7/236 (2%)

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           +Y K G + +AE +F++M  R +  WN+++GG+  N +   AL +Y+ M+  G + D  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 276 LTSVLRACTGLALLELGTQVHVHVLKYDHD--LILNNALLDMYCKCGSLEDAMSVFSRM- 332
              +L+AC  +  L  G ++H   +KY  D  + + N+L+ +Y KC  +  A  +F RM 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
           ++ DV+SW+++IS  + NG   EAL LF  M  + +  N  T    L AC  + F++ G 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 393 N-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
             H   +K    +D    +   ++ +  R GK+ EA  +   +    D VTW ++L
Sbjct: 181 QIHAAILKSGRVLDVYVAN--ALVAMYVRFGKMPEAAVIFGNLE-GKDIVTWNSML 233


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/609 (37%), Positives = 352/609 (57%), Gaps = 17/609 (2%)

Query: 50  CYQRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           C Q   PR A++    M   G  +D  T + +   C     +   K +H+  +  G   +
Sbjct: 244 CMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD 303

Query: 109 TFLVNILLNMHVKFSL---LEEAQVLFDQMPERNVVSWTTMISAYC-DAKMNDKALELLI 164
                 L++M+ K S    +++ + +FD+M + +V+SWT +I+ Y  +  +  +A+ L  
Sbjct: 304 VECS--LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFS 361

Query: 165 FMLREG-VRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKL 220
            M+ +G V PN FT+S+  +AC +L    + +Q+     K G  S+  V +++I ++ K 
Sbjct: 362 EMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKS 421

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
             + +A+  F  +  ++LV +N+ + G  +N + ++A  L   +          T  S+L
Sbjct: 422 DRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLL 481

Query: 281 RACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
                +  +  G Q+H  V+K     +  + NAL+ MY KCGS++ A  VF+ M  ++VI
Sbjct: 482 SGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVI 541

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
           SW++MI+G A++G++   L+ F  M    +KPN +T V +L ACSH G V +GW HF SM
Sbjct: 542 SWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSM 601

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
            + + I P  EHY+CM+DLL RAG L +A + I+ MP++ D + WR  LGAC+VH NT+L
Sbjct: 602 YEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTEL 661

Query: 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNK 518
              AA+KIL LDP +P  YI LSNIYA + KW+E  E+R+ M+ R + KE GCSWIEV  
Sbjct: 662 GKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGD 721

Query: 519 QIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDS----IQY 574
           +IH F V D++HP   +I   L  LI ++   GY PDT+ VL  LE E  E      +  
Sbjct: 722 KIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQ 781

Query: 575 HSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQD 634
           HSEK+A+ FGL+S ++ + +R+ KNLR+CGDCH   K  + +  + IV+RD  R+HHF+D
Sbjct: 782 HSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKD 841

Query: 635 GNCSCGDYW 643
           G CSC DYW
Sbjct: 842 GKCSCNDYW 850



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/414 (30%), Positives = 213/414 (51%), Gaps = 19/414 (4%)

Query: 54  DLPRAMKAMHAMQCHGVRA-DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
           DL  A+ A+  M   G+R  DSVT++ L+K C+        KLVH  ++    EP++ L 
Sbjct: 41  DLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLY 100

Query: 113 NILLNMHVKFSLLEEAQVLFDQM---PERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
           N L++++ K     +A+ +F+ M    +R+VVSW+ M++ Y +      A+++ +  L  
Sbjct: 101 NSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLEL 160

Query: 170 GVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVG-FESDVFVRSALIDIYAKLGE--L 223
           G+ PN + Y+AV+RAC   D + + R     ++K G FESDV V  +LID++ K GE   
Sbjct: 161 GLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVK-GENSF 219

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
            NA  VF++M   ++V W  +I    Q     EA+  +  M  +GF +D+ TL+SV  AC
Sbjct: 220 ENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSAC 279

Query: 284 TGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKC---GSLEDAMSVFSRMIQKDVISW 340
             L  L LG Q+H   ++      +  +L+DMY KC   GS++D   VF RM    V+SW
Sbjct: 280 AELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSW 339

Query: 341 STMISGLAQN-GYSQEALKLFESMKV-SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
           + +I+G  +N   + EA+ LF  M     ++PN+ T      AC +      G       
Sbjct: 340 TALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQA 399

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL-GACK 451
            K  G+       + +I +  ++ ++++A +    +  E + V++   L G C+
Sbjct: 400 FK-RGLASNSSVANSVISMFVKSDRMEDAQRAFESLS-EKNLVSYNTFLDGTCR 451


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/594 (38%), Positives = 343/594 (57%), Gaps = 15/594 (2%)

Query: 56  PRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNIL 115
           PR   + HA   H           +++ C+A  ++   + +H  +L  G  P+T L   L
Sbjct: 53  PRLASSPHAYHHH---------TSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKL 103

Query: 116 LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
           ++++     +  A+ LFD MP+RNV  W  +I AY      + A+ L   M+  GV P+ 
Sbjct: 104 VDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDN 163

Query: 176 FTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           FTY  VL+AC +L+ L   R++H  +    +  DVFV + ++D+YAK G + +A  VF+ 
Sbjct: 164 FTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDG 223

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           +  RD VVWNS+I  + QN    EAL L + M   G     +TL S + A    A L  G
Sbjct: 224 IAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRG 283

Query: 293 TQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
            ++H    +    L   L  +L+DMY K G ++ A  +F ++++++++SW+ MI G   +
Sbjct: 284 RELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMH 343

Query: 351 GYSQEALKLFESMKV-SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           G++ EAL LF  MK  +++ P+ IT VGVL AC+H G VE+    F  M   Y I P  +
Sbjct: 344 GHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQ 403

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
           HY+C+ID+LG  G+ +EA  LI  M  EPD+  W ALL  CK+H+N +L   A +K++ L
Sbjct: 404 HYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIEL 463

Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
           +P+D G Y+ LSNIYA S KW++ A VRK M  RG+ K   CSWIE+  + H F V D+S
Sbjct: 464 EPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDAS 523

Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
           HP+ D+I   L+ L   +   GY PD   V  +++ ++K + ++ HSE+LAI FGL+S  
Sbjct: 524 HPRSDEIYGELERLEGLMSDAGYVPDIIPVFHNVDDDEKRNMVRSHSERLAIAFGLISTP 583

Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            G  + + KNLR+C DCH   KL +++  + I+IRD  RYHHF +G CSC DYW
Sbjct: 584 PGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/527 (40%), Positives = 332/527 (62%), Gaps = 10/527 (1%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMND--KALELLIFMLREGVRPNMFTYSAVL 182
           ++ A  +FD++P+ ++V + TM   Y  A+ +D  +A+ L   +L  G+ P+ +T+S++L
Sbjct: 85  MDHAHRMFDKIPQPDIVLFNTMARGY--ARFDDPLRAILLCSQVLCSGLLPDDYTFSSLL 142

Query: 183 RACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
           +AC  L  L   +QLHC  +K+G   +++V   LI++Y    ++  A  VF+++    +V
Sbjct: 143 KACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVV 202

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
            +N+II   A+NS  +EAL L++ ++ +G      T+   L +C  L  L+LG  +H +V
Sbjct: 203 AYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYV 262

Query: 300 LK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
            K  +D  + +N AL+DMY KCGSL+DA+SVF  M ++D  +WS MI   A +G+  +A+
Sbjct: 263 KKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAI 322

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
            +   MK ++++P+ IT +G+L+ACSH G VE+G+ +F SM   YGI P  +HY CMIDL
Sbjct: 323 SMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDL 382

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           LGRAG+L+EA K I E+P +P  + WR LL +C  H N ++A    ++I  LD    G Y
Sbjct: 383 LGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDY 442

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           ++LSN+ A + +WD+V  +RK M  +G  K PGCS IEVN  +H F   D  H     ++
Sbjct: 443 VILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHSTSTILH 502

Query: 538 KHLKHLIQKLVGVGYAPDTNYVL-QDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRI 596
             L  L+++L   GY PDT+ V   D+E E+KE  ++YHSEKLAI +GL++   G TIR+
Sbjct: 503 HALDELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLLNTPPGTTIRV 562

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KNLR+C DCH  AK  + +  + I++RD  R+HHF+DG CSCGDYW
Sbjct: 563 VKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 173/346 (50%), Gaps = 19/346 (5%)

Query: 19  RQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYA 78
           R F     P +   NT+ R        + RF    D  RA+     + C G+  D  T++
Sbjct: 90  RMFDKIPQPDIVLFNTMARG-------YARF---DDPLRAILLCSQVLCSGLLPDDYTFS 139

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
            L+K C    A+EE K +H   +  G     ++   L+NM+   + ++ A+ +FD++ E 
Sbjct: 140 SLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEP 199

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLH 195
            VV++  +I++       ++AL L   +   G++P   T    L +C    +L + R +H
Sbjct: 200 CVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIH 259

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
             + K GF+  V V +ALID+YAK G L +A  VF +MP RD   W+++I  +A +    
Sbjct: 260 EYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGS 319

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NA 311
           +A+++ + MK+A    D+ T   +L AC+   L+E G + + H + +++ ++ +      
Sbjct: 320 QAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYE-YFHSMTHEYGIVPSIKHYGC 378

Query: 312 LLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEA 356
           ++D+  + G LE+A      + I+   I W T++S  + +G  + A
Sbjct: 379 MIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMA 424



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 163/325 (50%), Gaps = 11/325 (3%)

Query: 170 GVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK---LGELRNA 226
            + P   +  +++  C SL  L+Q+    IK   +++  V + LI+       +  + +A
Sbjct: 30  ALEPPSSSILSLIPKCTSLRELKQIQAYTIKT-HQNNPTVLTKLINFCTSNPTIASMDHA 88

Query: 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
             +F+++P  D+V++N++  G+A+  D   A+ L  ++  +G   D  T +S+L+AC  L
Sbjct: 89  HRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARL 148

Query: 287 ALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
             LE G Q+H   +K     ++ +   L++MY  C  ++ A  VF ++ +  V++++ +I
Sbjct: 149 KALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAII 208

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYG 403
           +  A+N    EAL LF  ++ S +KP  +T++  L +C+  G ++ G W H    K   G
Sbjct: 209 TSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKN--G 266

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
            D   +  + +ID+  + G L +AV +  +MP   D   W A++ A   H +   AI   
Sbjct: 267 FDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRR-DTQAWSAMIVAYATHGHGSQAISML 325

Query: 464 KKILNLDPQDPGTYILLSNIYANSQ 488
           +++     Q P     L  +YA S 
Sbjct: 326 REMKKAKVQ-PDEITFLGILYACSH 349



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 104/229 (45%), Gaps = 22/229 (9%)

Query: 50  CYQRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           C +   P  A+     +Q  G++   VT    +  C    A++  + +H +V   GF+  
Sbjct: 211 CARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQY 270

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             +   L++M+ K   L++A  +F  MP R+  +W+ MI AY       +A+ +L  M +
Sbjct: 271 VKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKK 330

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFE------------SDVFVRSALIDI 216
             V+P+  T+  +L AC         H G+++ G+E              +     +ID+
Sbjct: 331 AKVQPDEITFLGILYACS--------HTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDL 382

Query: 217 YAKLGELRNAECVFNEMPTRDL-VVWNSIIGGFAQNSDVDEALNLYKRM 264
             + G L  A    +E+P +   ++W +++   + + +V+ A  + +R+
Sbjct: 383 LGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRI 431


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/682 (35%), Positives = 365/682 (53%), Gaps = 73/682 (10%)

Query: 35  ITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAK 94
           I +   SL +    F         ++    M   G+  DS     +IK C A  A++  K
Sbjct: 35  ILKTGISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGK 94

Query: 95  LVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP------------------ 136
            +H   L  G   ++ +++ LL+M+V+F  L++A+ +FD++P                  
Sbjct: 95  QMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKG 154

Query: 137 -----------------ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
                            E N+VSW  MIS +  +     A+ +   M  EG++P+  + S
Sbjct: 155 RVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVS 214

Query: 180 AVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           +VL A   L   ++  Q+HC +IK G   D FV SALID+Y K         VFNEM   
Sbjct: 215 SVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEV 274

Query: 237 DLVVWNSIIGGFAQNSDVD---------------------------------EALNLYKR 263
           D+   N+++ G ++N  VD                                 EAL L++ 
Sbjct: 275 DVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFRE 334

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGS 321
           M+  G   +  T+  +L AC  +A L  G   H   L+    +D+ + +AL+DMY KCG 
Sbjct: 335 MQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGR 394

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
           +  +   F  M  ++++SW+++++G A +G + EA+ +FE M+    KP++++   VL A
Sbjct: 395 MLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSA 454

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
           C+  G  E+GW +F SM + +G++   EHYSCM+ LLGR+G+L+EA  +I +MP+EPD+ 
Sbjct: 455 CTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSC 514

Query: 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
            W ALL +C+VH   DL   AAK++  L+P++PG YILLSNIYA+   W EV  VR  MR
Sbjct: 515 VWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMR 574

Query: 502 ARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQ 561
           +RG+ K PG SWIE+  ++H     DSSHPQ+ +I + L  L  ++   GY P T++VLQ
Sbjct: 575 SRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQ 634

Query: 562 DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTI 621
           D+E + KE  +  HSEKLA+V GL++   G  +++ KNLRIC DCH   K  +  E + I
Sbjct: 635 DVEEQDKEQILCGHSEKLAVVLGLLNTKPGFPLQVIKNLRICRDCHAVIKFISDFEKREI 694

Query: 622 VIRDPIRYHHFQDGNCSCGDYW 643
            +RD  R+H F+ G CSCGDYW
Sbjct: 695 FVRDTNRFHQFKGGVCSCGDYW 716


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/595 (38%), Positives = 353/595 (59%), Gaps = 6/595 (1%)

Query: 53  RDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
           RDL  A++  H  +         TY+ +I  C     +  A+ +H+ VL  GF     ++
Sbjct: 238 RDL-EALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVM 296

Query: 113 NILLNMHVKFSLLEEAQVLFDQMP-ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV 171
             L++ + K   L++A  +F  M   +NVVSWT MI           A  L   M  +GV
Sbjct: 297 TALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGV 356

Query: 172 RPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
            PN  TYS +L   ++     Q+H  +IK  +E    V +AL+  Y+KL     A  +F 
Sbjct: 357 APNDLTYSTILTVSEASFP-PQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFK 415

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL-LE 290
            +  +D+V W++++  +AQ  D + A N + +M   G   ++ T++S + AC   A  ++
Sbjct: 416 MIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVD 475

Query: 291 LGTQVHVHVLKYD-HD-LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
           LG Q H   +K+  HD L +++AL+ MY + GS+E+A  VF R   +D++SW++M+SG A
Sbjct: 476 LGRQFHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYA 535

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           Q+GYSQ+AL +F  M+V  I  + +T + V+  C+HAG VE+G  +F  M + YGI P  
Sbjct: 536 QHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTM 595

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           +HY+CM+DL  RAGKL E + LI  MP+      WRALLGAC+VH+N +L   AA+K+L+
Sbjct: 596 DHYACMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLS 655

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           L+P D  TY+LLSNIY+ + KW E  EVRK M  + + KE GCSWI++  ++H F  +D 
Sbjct: 656 LEPLDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFFIASDK 715

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
           SHP  ++I   L+ +  KL   GY PDT++V  D+  +QKE  +  HSE+LA+ FGL++ 
Sbjct: 716 SHPLSEQIYAKLRAMTAKLKQEGYCPDTSFVPHDVAEDQKEAMLAMHSERLALAFGLIAT 775

Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
                + I KNLR+ GD HT  K+ +++E++ IV+RD  R+HHF+ G CSCGD+W
Sbjct: 776 PPAAPLHIFKNLRVSGDGHTVMKMVSEIEDREIVMRDCCRFHHFKSGVCSCGDFW 830



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 127/438 (28%), Positives = 209/438 (47%), Gaps = 23/438 (5%)

Query: 35  ITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAK 94
           + RN  +     T +     L   M     M+  GV  +  T++ ++    ++  V+  +
Sbjct: 118 LKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQ 177

Query: 95  LVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK 154
            VH   +  G     F+ N L+NM+ K  L+EEA+V+F +M  R++VSW T+++      
Sbjct: 178 HVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNG 237

Query: 155 MNDKALELL------IFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFES 205
            + +AL+L       I ML E       TYS V+  C +L  L   RQLH  ++K GF S
Sbjct: 238 RDLEALQLFHDSRSSITMLTES------TYSTVINLCANLKHLGLARQLHSSVLKHGFHS 291

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMP-TRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
              V +AL+D Y K G+L  A  VF  M  ++++V W ++I G  QN D+  A  L+ RM
Sbjct: 292 YGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRM 351

Query: 265 KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSL 322
           +  G A +  T +++L             Q+H  V+K  Y+    +  AL+  Y K  S 
Sbjct: 352 REDGVAPNDLTYSTILTVSEA----SFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCST 407

Query: 323 EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
           E+A+S+F  + QKDV+SWS M++  AQ G    A   F  M +  +KPN  TI   + AC
Sbjct: 408 EEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDAC 467

Query: 383 SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
           +      D    F ++   +         S ++ +  R G ++ A + + E   + D ++
Sbjct: 468 ASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIENA-QCVFERQTDRDLLS 526

Query: 443 WRALLGACKVHRNTDLAI 460
           W ++L     H  +  A+
Sbjct: 527 WNSMLSGYAQHGYSQKAL 544



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 122/357 (34%), Positives = 185/357 (51%), Gaps = 19/357 (5%)

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H+H   G     T LV++ +N H   S+L+  +V F+ M +RNVV+WT++++ Y  A + 
Sbjct: 86  HDH---GDIRVGTSLVDMYMNWH---SVLDGRKV-FEGMLKRNVVTWTSLLTGYIQAGVL 138

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLR--ACDSLIILRQ-LHCGIIKVGFESDVFVRSAL 213
              + L   M  EGV PN FT+S+VL   A   ++ L Q +H   IK G  S VFV ++L
Sbjct: 139 LDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSL 198

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           +++YAK G +  A  VF  M TRD+V WN+++ G   N    EAL L+   + +     +
Sbjct: 199 MNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTE 258

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSR 331
           ST ++V+  C  L  L L  Q+H  VLK+      N   AL+D Y K G L+ A+ VF  
Sbjct: 259 STYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLL 318

Query: 332 MI-QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
           M   ++V+SW+ MI G  QNG    A  LF  M+   + PN +T   +L   S A F   
Sbjct: 319 MSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTIL-TVSEASFPPQ 377

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
              H + +K  Y   P     + ++    +    +EA+  I +M  + D V+W A+L
Sbjct: 378 --IHAQVIKTNYECTPTVG--TALMVSYSKLCSTEEALS-IFKMIDQKDVVSWSAML 429



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 110/225 (48%), Gaps = 13/225 (5%)

Query: 231 NEMPTRD--LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
            + PTR    + +++   GF   + +D  L+ ++R  R         L  +++ C  +  
Sbjct: 15  TKFPTRTPWTMPFSTTWQGFVHQA-LDHFLDAHRRQGRC---VGGGALLGIIKICGSVPD 70

Query: 289 LELGTQVHVHVLK--YDH-DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
             LG Q+H   ++  +DH D+ +  +L+DMY    S+ D   VF  M++++V++W+++++
Sbjct: 71  RVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLT 130

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGI 404
           G  Q G   + + LF  M+   + PN  T   VL   +  G V+ G + H +S+K  +G 
Sbjct: 131 GYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIK--FGC 188

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
                  + ++++  + G ++EA  +   M    D V+W  L+  
Sbjct: 189 CSTVFVCNSLMNMYAKCGLVEEARVVFCRMETR-DMVSWNTLMAG 232


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/552 (39%), Positives = 339/552 (61%), Gaps = 5/552 (0%)

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H + +  G +   ++ N +L+M+ + + +E+A  +F+ +   ++ ++ +MI+ + D    
Sbjct: 131 HGYAVKSGLQEHPYVCNAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGEF 190

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSAL 213
           D ++ ++  M+ E  + +  +Y AVL  C S   L++  Q+H   +K   E +V+V SAL
Sbjct: 191 DGSIRIVRSMVGEVEQWDHVSYVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSAL 250

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           +D+Y K    R+A   F  +P +++V W +++  + QN   ++AL L+  ++  G   ++
Sbjct: 251 VDMYGKCDCARDAHSAFEVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNE 310

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSR 331
            T    L +C GLA L+ G  +    +K  H   L + NAL++MY K GS+ DA  VF  
Sbjct: 311 FTYAVALNSCAGLAALKNGNALSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLS 370

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           M  +DV+SW+++I G A +G ++EA+ +F  M ++ I P+Y+T VGVL AC+  G V++G
Sbjct: 371 MPWRDVVSWNSVIIGYAHHGLAREAMCVFHDMLLAEIVPSYVTFVGVLLACAQLGLVDEG 430

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
             +   M K  GI PGREHY+CM+ LL RAG+L EA + I       D V W++LL +C+
Sbjct: 431 LYYLNIMMKEMGIKPGREHYTCMVGLLCRAGRLDEAEQFILSNCIGTDVVAWKSLLSSCQ 490

Query: 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGC 511
           V++N  L    A++IL L P D GTY+LLSN+YA + +WD V +VRK MR RG+ KEPG 
Sbjct: 491 VYKNYGLGHRVAEQILQLKPNDVGTYVLLSNMYAKANRWDGVVKVRKLMRERGVRKEPGV 550

Query: 512 SWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDS 571
           SWI+V  ++H F   D +H  I++I   LK LI ++  +GY P+   VL D+E EQKE+ 
Sbjct: 551 SWIQVGSEVHVFTSEDKNHKWINQITIKLKELIGQIKVIGYVPNCAVVLHDVEAEQKEEH 610

Query: 572 IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHH 631
           + YHSEK+A+ FGL+   +G+TIRI KNLRIC DCH   KL + +  + IV+RD +R+H 
Sbjct: 611 LMYHSEKMALAFGLIHSPEGETIRIMKNLRICDDCHVAIKLISVVTRRKIVVRDTVRFHC 670

Query: 632 FQDGNCSCGDYW 643
             DG CSC DYW
Sbjct: 671 IDDGVCSCDDYW 682



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 176/360 (48%), Gaps = 10/360 (2%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI---FMLRE 169
           N L+  + K   L  A+ +FD MP RN VS   ++S Y  A  +  AL LL    F L E
Sbjct: 49  NHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYASAGRHSDALALLKAADFSLNE 108

Query: 170 GVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
            V     + +A +R   S  + RQ H   +K G +   +V +A++ +Y +   + +A  V
Sbjct: 109 YVLSTALSAAAHVR---SYGMGRQCHGYAVKSGLQEHPYVCNAVLHMYCQCAHVEDAVKV 165

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F  +   D+  +NS+I GF    + D ++ + + M       D  +  +VL  C     L
Sbjct: 166 FENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCASTKEL 225

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
            LG QVH   LK   + ++ + +AL+DMY KC    DA S F  + +K+V+SW+ +++  
Sbjct: 226 LLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSWTAVMTAY 285

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
            QN   ++AL+LF  +++  ++PN  T    L +C+    +++G N   +     G    
Sbjct: 286 TQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNG-NALSASAMKTGHWGA 344

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
               + ++++  ++G + +A ++   MP+  D V+W +++     H     A+C    +L
Sbjct: 345 LSVCNALMNMYSKSGSIHDAWRVFLSMPWR-DVVSWNSVIIGYAHHGLAREAMCVFHDML 403



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 157/307 (51%), Gaps = 11/307 (3%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D V+Y  ++  C +   +     VH   L    E   ++ + L++M+ K     +A   F
Sbjct: 208 DHVSYVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAF 267

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192
           + +PE+NVVSWT +++AY   +  + AL+L + +  EGVRPN FTY+  L +C  L  L+
Sbjct: 268 EVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALK 327

Query: 193 Q---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
               L    +K G    + V +AL+++Y+K G + +A  VF  MP RD+V WNS+I G+A
Sbjct: 328 NGNALSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYA 387

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN 309
            +    EA+ ++  M  A       T   VL AC  L L++ G   +++++  +  +   
Sbjct: 388 HHGLAREAMCVFHDMLLAEIVPSYVTFVGVLLACAQLGLVDEGL-YYLNIMMKEMGIKPG 446

Query: 310 ----NALLDMYCKCGSLEDAMS-VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
                 ++ + C+ G L++A   + S  I  DV++W +++S      Y    L    + +
Sbjct: 447 REHYTCMVGLLCRAGRLDEAEQFILSNCIGTDVVAWKSLLSSCQV--YKNYGLGHRVAEQ 504

Query: 365 VSRIKPN 371
           + ++KPN
Sbjct: 505 ILQLKPN 511



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 133/262 (50%), Gaps = 12/262 (4%)

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           + +H  +I+     DV   + LI  Y K G L  A  +F+ MP+R+ V  N ++ G+A  
Sbjct: 31  KAIHAQMIRAA-HFDVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYASA 89

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHDLIL 308
               +AL L   +K A F+ ++  L++ L A   +    +G Q H + +K    +H  + 
Sbjct: 90  GRHSDALAL---LKAADFSLNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVC 146

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            NA+L MYC+C  +EDA+ VF  +   D+ ++++MI+G    G    ++++  SM     
Sbjct: 147 -NAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVE 205

Query: 369 KPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           + ++++ V VL  C+    +  G   H +++K+   ++      S ++D+ G+    ++A
Sbjct: 206 QWDHVSYVAVLGHCASTKELLLGCQVHAQALKRR--LEQNVYVGSALVDMYGKCDCARDA 263

Query: 428 VKLIHEMPYEPDAVTWRALLGA 449
                 +P E + V+W A++ A
Sbjct: 264 HSAFEVLP-EKNVVSWTAVMTA 284



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 94/214 (43%), Gaps = 5/214 (2%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           +N  S     T +        A++    ++  GVR +  TYA  +  C    A++    +
Sbjct: 273 KNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNAL 332

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
               +  G      + N L+NM+ K   + +A  +F  MP R+VVSW ++I  Y    + 
Sbjct: 333 SASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAHHGLA 392

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLII----LRQLHCGIIKVGFESDVFVRSA 212
            +A+ +   ML   + P+  T+  VL AC  L +    L  L+  + ++G +      + 
Sbjct: 393 REAMCVFHDMLLAEIVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGREHYTC 452

Query: 213 LIDIYAKLGELRNAE-CVFNEMPTRDLVVWNSII 245
           ++ +  + G L  AE  + +     D+V W S++
Sbjct: 453 MVGLLCRAGRLDEAEQFILSNCIGTDVVAWKSLL 486



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 292 GTQVHVHVLKYDH-DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
           G  +H  +++  H D+I +N L+  Y KCG L  A  +F  M  ++ +S + ++SG A  
Sbjct: 30  GKAIHAQMIRAAHFDVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYASA 89

Query: 351 GYSQEALKLFESMKVS 366
           G   +AL L ++   S
Sbjct: 90  GRHSDALALLKAADFS 105


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/522 (41%), Positives = 320/522 (61%), Gaps = 4/522 (0%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L  A+ +F ++P  + +++ T+I ++        +L     M   G+  + FT+  VL+A
Sbjct: 38  LSYARYVFSRIPSPDTIAYNTIIRSHSRF-FPSHSLFYFFSMRSNGIPLDNFTFPFVLKA 96

Query: 185 CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           C  L I   LH  I+K G +SD+FV++ALI +Y   G L  A  VF+EM  RD V W+++
Sbjct: 97  CSRLQINLHLHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTV 156

Query: 245 IGGFAQNSDVDEALNLYKRMK-RAGFAADQSTLTSVLRACTGLALLELGTQVHVHV--LK 301
           I  F  N    EAL+L+++M+       D+ T+ SV+ A + L  LELG  V   +  L 
Sbjct: 157 IASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLG 216

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
               + L  AL+DM+ +CGS+++++ VF +M  ++V++W+ +I+GL  +G S EAL +F 
Sbjct: 217 LGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFH 276

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
           SM+ S ++P+Y+T  GVL ACSH G V++GW+ F+S++K Y +DP  +HY CM+D+LGRA
Sbjct: 277 SMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYRMDPLLDHYGCMVDILGRA 336

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           G L EA   +  MP +P+++ WR LLGAC  H N  LA     KI  +     G  +LLS
Sbjct: 337 GLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLS 396

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
           N+Y  + +W E A +R  MR + I KEPGCS I V++ IH F   D+SHPQ + I K L 
Sbjct: 397 NVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLS 456

Query: 542 HLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
            +I  L   GY   T  VL D+E E++E S+ YHSEKLA+ F ++S+   +TIRI KNLR
Sbjct: 457 SIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLR 516

Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           IC DCH+F K  +    + I+IRD  R+HHF+ G CSC DYW
Sbjct: 517 ICYDCHSFMKHISVRFERKIIIRDRNRFHHFEKGLCSCHDYW 558



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 169/334 (50%), Gaps = 22/334 (6%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAEL 80
           FS   +P   + NTI R+ S      + F +            +M+ +G+  D+ T+  +
Sbjct: 45  FSRIPSPDTIAYNTIIRSHSRFFPSHSLFYF-----------FSMRSNGIPLDNFTFPFV 93

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
           +K C     ++    +H+ ++  G + + F+ N L+ ++     LE A  +FD+M ER+ 
Sbjct: 94  LKAC---SRLQINLHLHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDS 150

Query: 141 VSWTTMISAYCDAKMNDKALELLIFM-LREGVRPNMFTYSAVLRACDSLIIL---RQLHC 196
           VSW+T+I+++ +     +AL+L   M L + V P+  T  +V+ A   L  L   R +  
Sbjct: 151 VSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRA 210

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
            I ++G    V + +ALID++++ G +  +  VF +M  R+++ W ++I G   +    E
Sbjct: 211 FIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTE 270

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNN--ALL 313
           AL ++  M+++G   D  T + VL AC+   L++ G  +   + K Y  D +L++   ++
Sbjct: 271 ALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYRMDPLLDHYGCMV 330

Query: 314 DMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
           D+  + G L +A     RM ++ + I W T++  
Sbjct: 331 DILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGA 364



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 91/201 (45%), Gaps = 21/201 (10%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V  D VT   +I        +E  + V   +   G      L   L++M  +   ++E+ 
Sbjct: 182 VVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESI 241

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
           V+F++M  RNV++WT +I+       + +AL +   M + GV+P+  T+S VL AC    
Sbjct: 242 VVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACS--- 298

Query: 190 ILRQLHCGIIKVGFESDVFVRSA------------LIDIYAKLGELRNAECVFNEMPTR- 236
                H G++K G++    +R              ++DI  + G L  A      MP + 
Sbjct: 299 -----HGGLVKEGWDIFESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKP 353

Query: 237 DLVVWNSIIGGFAQNSDVDEA 257
           + ++W +++G    ++++  A
Sbjct: 354 NSIIWRTLLGACVNHNNLGLA 374


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/597 (38%), Positives = 352/597 (58%), Gaps = 20/597 (3%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE----------TFLVNI 114
           MQ H +R ++ T   L+     + A+ +   VH + +     P             L   
Sbjct: 219 MQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTA 278

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV--- 171
           LL+M+ K   L  A+ +FD MP RN V+W+ +I  +       +A  L   ML +G+   
Sbjct: 279 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL 338

Query: 172 RPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
            P   + ++ LRAC SL  LR   QLH  + K G  +D+   ++L+ +YAK G +  A  
Sbjct: 339 SPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIA 396

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           +F+EM  +D V +++++ G+ QN   +EA  ++K+M+      D +T+ S++ AC+ LA 
Sbjct: 397 LFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAA 456

Query: 289 LELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           L+ G   H  V+      +  + NAL+DMY KCG ++ +  VF+ M  +D++SW+TMI+G
Sbjct: 457 LQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAG 516

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
              +G  +EA  LF  M      P+ +T + +L ACSH+G V +G + F  M   YG+ P
Sbjct: 517 YGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTP 576

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
             EHY CM+DLL R G L EA + I  MP   D   W ALLGAC+V++N DL    ++ I
Sbjct: 577 RMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMI 636

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
             L P+  G ++LLSNIY+ + ++DE AEVR   + +G  K PGCSWIE+N  +HAF   
Sbjct: 637 QELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGG 696

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D SHPQ  +I + L +++  +  +GY PDT++VLQDLE E+KE ++  HSEKLAI +G++
Sbjct: 697 DQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGIL 756

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           SL++ KTI + KNLR+CGDCHT  K  + ++ + I++RD  R+HHF++G CSCGD+W
Sbjct: 757 SLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/432 (29%), Positives = 217/432 (50%), Gaps = 21/432 (4%)

Query: 68  HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           H V  ++ T+   +K C A       + +H H +  G + + F+   LL+M+VK + L +
Sbjct: 119 HRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPD 178

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE--GVRPNMFTYSAVLRAC 185
           A  +F  MP R++V+W  M++ Y    M   A+  L+ M  +   +RPN  T  A+L   
Sbjct: 179 AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLL 238

Query: 186 DSLIILRQ---LHCGIIKVGFESD----------VFVRSALIDIYAKLGELRNAECVFNE 232
                L Q   +H   I+     +          V + +AL+D+YAK G L  A  VF+ 
Sbjct: 239 AQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 298

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLRACTGLALLEL 291
           MP R+ V W+++IGGF   S + +A  L+K M   G      +++ S LRAC  L  L +
Sbjct: 299 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRM 358

Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G Q+H  + K     DL   N+LL MY K G ++ A+++F  M  KD +S+S ++SG  Q
Sbjct: 359 GEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQ 418

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           NG ++EA  +F+ M+   ++P+  T+V ++ ACSH   ++ G     S+    G+     
Sbjct: 419 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSV-IIRGLASETS 477

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
             + +ID+  + G++  + ++ + MP   D V+W  ++    +H     A     ++ NL
Sbjct: 478 ICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHGLGKEATALFLEMNNL 536

Query: 470 D-PQDPGTYILL 480
             P D  T+I L
Sbjct: 537 GFPPDGVTFICL 548



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 128/482 (26%), Positives = 214/482 (44%), Gaps = 52/482 (10%)

Query: 119 HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA--LELLIFMLREGVRPNMF 176
           H+    L  A  LFDQ+P  +V ++  +I AY  +     A  L L   MLR  V PN +
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 177 TYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T+   L+AC +L      R +H   I  G ++D+FV +AL+D+Y K   L +A  +F  M
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALN--LYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           P RDLV WN+++ G+A +     A+   L  +M+      + STL ++L        L  
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 292 GTQVHVHVL------------KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
           GT VH + +            K    ++L  ALLDMY KCGSL  A  VF  M  ++ ++
Sbjct: 247 GTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT 306

Query: 340 WSTMISGLAQNGYSQEALKLFESM---KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
           WS +I G        +A  LF++M    +  + P   +I   L AC+    +  G     
Sbjct: 307 WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMG-EQLH 363

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
           ++    G+       + ++ +  +AG + +A+ L  EM  + D V++ AL+     +   
Sbjct: 364 ALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSGYVQNGRA 422

Query: 457 DLAICAAKKI--LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG---- 510
           + A    KK+   N++P D  T + L    ++            ++  RG+  E      
Sbjct: 423 EEAFLVFKKMQACNVEP-DAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNA 481

Query: 511 -------CSWIEVNKQIHAFNVADS----------SHPQIDKINKHLKHLIQKLVGVGYA 553
                  C  I++++Q+  FN+  S          +   I  + K    L  ++  +G+ 
Sbjct: 482 LIDMYAKCGRIDLSRQV--FNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFP 539

Query: 554 PD 555
           PD
Sbjct: 540 PD 541


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/580 (39%), Positives = 342/580 (58%), Gaps = 6/580 (1%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G R DS+T   ++  C    A+   +  H   +  G E    +   +L+ + K   +  A
Sbjct: 156 GERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAA 215

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           +V+FD MP +N VSW  MI  Y     + +AL L   M+ EGV     +  A L+AC  L
Sbjct: 216 RVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGEL 275

Query: 189 IILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             L +   +H  ++++G +S+V V +ALI +Y+K   +  A  VF+E+  R  V WN++I
Sbjct: 276 GCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMI 335

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--D 303
            G AQN   ++A+ L+ RM+      D  TL SV+ A   ++       +H + ++   D
Sbjct: 336 LGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLD 395

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D+ +  AL+DMY KCG +  A  +F+   ++ VI+W+ MI G   +G+ + A++LFE M
Sbjct: 396 QDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEM 455

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
           K   I PN  T + VL ACSHAG V++G  +F SMK+ YG++PG EHY  M+DLLGRAGK
Sbjct: 456 KSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGK 515

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L EA   I +MP +P    + A+LGACK+H+N +LA  +A+KI  L PQ+   ++LL+NI
Sbjct: 516 LDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANI 575

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           YAN+  W +VA VR  M   G+ K PG S I++  +IH F    ++H Q  +I   L  L
Sbjct: 576 YANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKL 635

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
           I+++  VGY PDT+ +  D+E + K   +  HSEKLAI FGL+    G TI+I+KNLR+C
Sbjct: 636 IEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVC 694

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            DCH   KL + +  + I++RD  R+HHF+DG CSCGDYW
Sbjct: 695 NDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/409 (31%), Positives = 219/409 (53%), Gaps = 10/409 (2%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111
           + DLP A+ A  AM   G      T+  L+K C AR  +   + VH  + + G + E   
Sbjct: 37  RSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALA 96

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML-REG 170
              L NM+ K     +A+ +FD+MP R+ V+W  +++ Y    +   A+E+++ M   EG
Sbjct: 97  ATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEG 156

Query: 171 VRPNMFTYSAVL---RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
            RP+  T  +VL       +L   R+ H   I+ G E  V V +A++D Y K G++R A 
Sbjct: 157 ERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAAR 216

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            VF+ MPT++ V WN++I G+AQN D  EAL L+ RM   G      ++ + L+AC  L 
Sbjct: 217 VVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELG 276

Query: 288 LLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
            L+ G +VH  +++   D ++ + NAL+ MY KC  ++ A  VF  + ++  +SW+ MI 
Sbjct: 277 CLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMIL 336

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH-AGFVEDGWNHFKSMKKFYGI 404
           G AQNG S++A++LF  M++  +KP+  T+V V+ A +  +  ++  W H  S++    +
Sbjct: 337 GCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIR--LHL 394

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           D      + +ID+  + G++  A +++     E   +TW A++     H
Sbjct: 395 DQDVYVLTALIDMYAKCGRVNIA-RILFNSARERHVITWNAMIHGYGSH 442



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 164/349 (46%), Gaps = 17/349 (4%)

Query: 36  TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL 95
           T+NS S       +    D   A+   + M   GV    V+    ++ C     ++E   
Sbjct: 224 TKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMR 283

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           VH  ++  G +    ++N L+ M+ K   ++ A  +FD++  R  VSW  MI        
Sbjct: 284 VHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGC 343

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSA 212
           ++ A+ L   M  E V+P+ FT  +V+ A   +   +  R +H   I++  + DV+V +A
Sbjct: 344 SEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTA 403

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           LID+YAK G +  A  +FN    R ++ WN++I G+  +     A+ L++ MK  G   +
Sbjct: 404 LIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPN 463

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSV 328
           ++T  SVL AC+   L++ G + +   +K D+ L         ++D+  + G L++A + 
Sbjct: 464 ETTFLSVLSACSHAGLVDEGRE-YFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAF 522

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
             +M          M  GL+  G    A KL ++++++      I  +G
Sbjct: 523 IQKM---------PMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELG 562


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/561 (40%), Positives = 344/561 (61%), Gaps = 24/561 (4%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNM--HVKFSLLEEAQVLFDQMPERNVVSWTTMI 147
           +EE + +H  +L  G   +    + LL          L  A+ +FD++   N   W TMI
Sbjct: 31  MEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMI 90

Query: 148 SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFE 204
             Y ++K  ++AL L   ML   V  N +T+  +L+AC S+  L   +Q+H  IIK+GF 
Sbjct: 91  RGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFG 150

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
           S+++  ++L+++Y+K G++++A  +F+++  RD                  EALNL+ RM
Sbjct: 151 SEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD-----------------TEALNLFHRM 193

Query: 265 KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSL 322
           + AG   D   L S L+AC  L +L+ G  +H ++ K++   D IL   L+DMY KCG L
Sbjct: 194 QTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDL 253

Query: 323 EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
           E+A+ VF +M +K V  W+ MISG A +G  +EAL+ F  M+ + ++PN +T  G+L AC
Sbjct: 254 EEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTAC 313

Query: 383 SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
           SHAG V +    F+SM++ +G  P  EHY CM+DLLGRAG L+EA +LI  MP +P+A  
Sbjct: 314 SHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAI 373

Query: 443 WRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502
           W ALL AC +H N +L     K ++ +DP   G YI L++I+A + +W++ A VR+ M+ 
Sbjct: 374 WGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKE 433

Query: 503 RGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQD 562
           +G++K PGCS I VN   H F   D SHPQI +I+  L+ ++++L   GY P    +L D
Sbjct: 434 QGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLD 493

Query: 563 LEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIV 622
           LE ++KE +I +HSEKLA+ FGL+S   G TIRI KNLR+C DCHT  KL +K+  + I+
Sbjct: 494 LEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREIL 553

Query: 623 IRDPIRYHHFQDGNCSCGDYW 643
           +RD  R+H F+DGNC+CGDYW
Sbjct: 554 MRDRTRFHLFKDGNCTCGDYW 574



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 190/426 (44%), Gaps = 62/426 (14%)

Query: 14  PSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD 73
           P+S +  ++ T+   +   NT   N+         +   ++   A+   H M  H V  +
Sbjct: 63  PNSGSLAYARTVFDRIFRPNTFMWNTM-----IRGYSNSKEPEEALLLYHHMLYHSVPHN 117

Query: 74  SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFD 133
           + T+  L+K C +  A+EE + +H H++  GF  E +  N LLN++ K   ++ A++LFD
Sbjct: 118 AYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFD 177

Query: 134 QMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ 193
           Q+ +R+                  +AL L   M   G++ +     + L+AC  L +L Q
Sbjct: 178 QVDQRDT-----------------EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQ 220

Query: 194 ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
              +H  I K   E D  +   LID+YAK G+L  A  VF +M  + + VW ++I G+A 
Sbjct: 221 GKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAI 280

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNN 310
           +    EAL  + +M+ AG   +Q T T +L AC+   L      VH   L ++       
Sbjct: 281 HGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGL------VHEAKLLFE------- 327

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
                     S+E          +  +  +  M+  L + G  +EA +L E+M V   KP
Sbjct: 328 ----------SMERIHG-----FKPSIEHYGCMVDLLGRAGLLKEAEELIENMPV---KP 369

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKK-FYGIDPGR-EHYSCMIDLLGRAGKLQEAV 428
           N      +L AC   G +E G    K + K    +DPG    Y  +  +   AG+  +A 
Sbjct: 370 NAAIWGALLNACHIHGNLELG----KQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAA 425

Query: 429 KLIHEM 434
           ++  +M
Sbjct: 426 RVRRQM 431



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 138/279 (49%), Gaps = 27/279 (9%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRDL 238
           +L+ C ++  LRQ+H  ++K G   D    S L+   A    G L  A  VF+ +   + 
Sbjct: 24  LLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNT 83

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
            +WN++I G++ + + +EAL LY  M       +  T   +L+AC+ ++ LE   Q+H H
Sbjct: 84  FMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAH 143

Query: 299 VLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           ++K  +  ++   N+LL++Y K G ++ A  +F ++ Q+D                  EA
Sbjct: 144 IIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT-----------------EA 186

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSC-M 414
           L LF  M+ + IK + + +V  L AC+  G ++ G W H    K    IDP      C +
Sbjct: 187 LNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPI---LGCVL 243

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           ID+  + G L+EA+++  +M  E     W A++    +H
Sbjct: 244 IDMYAKCGDLEEAIEVFRKME-EKGVSVWTAMISGYAIH 281


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/619 (35%), Positives = 374/619 (60%), Gaps = 14/619 (2%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHG-VRADSVTYAELIKCCLARHAVE 91
           N I+ NS  ++  +++    RD   A + +  MQ    V+ + VT   ++  C       
Sbjct: 363 NVISWNS--MIGGYSK---DRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFL 417

Query: 92  EAKLVHNHVLSGGF-EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
           + K +H + L  GF + +  + N  +  + K   L  A+ +F  M  + V SW  +I  +
Sbjct: 418 KLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGH 477

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDV 207
                  KAL+L + M   G+ P++FT +++L AC    SL   +++H  +++ GFE D 
Sbjct: 478 VQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDE 537

Query: 208 FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
           F+  +L+ +Y + G++  A+  F+ M  ++LV WN++I GF+QN    +AL+++ +M  +
Sbjct: 538 FICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSS 597

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHDLILNNALLDMYCKCGSLED 324
               D+ ++   L AC+ ++ L LG ++H   +K    +H  +   +L+DMY KCG +E 
Sbjct: 598 KIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFV-TCSLIDMYAKCGCMEQ 656

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           + ++F R+  K  ++W+ +I+G   +G+ ++A++LF+SM+ +  +P+ +T + +L AC+H
Sbjct: 657 SQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNH 716

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           AG V +G  +   M+  +GI P  EHY+C++D+LGRAG+L EA++L++E+P +PD+  W 
Sbjct: 717 AGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWS 776

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
           +LL +C+ +R+ D+    A K+L L P     Y+L+SN YA   KWDEV ++R+ M+  G
Sbjct: 777 SLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIG 836

Query: 505 ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLE 564
           + K+ GCSWIE+  ++  F V D S  Q  KI +    L +K+  +GY PDT+ VL +LE
Sbjct: 837 LQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELE 896

Query: 565 GEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIR 624
            ++K   ++ HSEKLAI FGL++  +G T+R+ KNLRIC DCH   KL +K++ + I++R
Sbjct: 897 EDEKIKILRNHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVR 956

Query: 625 DPIRYHHFQDGNCSCGDYW 643
           D  R+HHF++G CSCGDYW
Sbjct: 957 DNKRFHHFKNGFCSCGDYW 975



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 203/390 (52%), Gaps = 20/390 (5%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D+ T   +IK C+  + V   + VH   L      + F+ N L+ M+ KF  +E A  +F
Sbjct: 195 DNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVF 254

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR--EGVRPNMFTYSAVLRACDSLII 190
           D+MP+RN+VSW +++ A  +  + +++  L   +L   EG+ P++ T   V+  C     
Sbjct: 255 DKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGE 314

Query: 191 LRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           +R     H   +K+G   ++ V S+L+D+Y+K G L  A  +F +   ++++ WNS+IGG
Sbjct: 315 VRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLF-DTNEKNVISWNSMIGG 373

Query: 248 FAQNSDVDEALNLYKRMK-RAGFAADQSTLTSVLRAC-TGLALLELGTQVHVHVLKY--- 302
           ++++ D   A  L ++M+       ++ TL +VL  C   +  L+L  ++H + L++   
Sbjct: 374 YSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKL-KEIHGYALRHGFI 432

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
             D ++ NA +  Y KCGSL  A  VF  M  K V SW+ +I G  QNG+ ++AL L+  
Sbjct: 433 QSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLL 492

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSC--MIDLLG 419
           M+ S ++P+  TI  +L AC+    +  G   H   ++  + +D     + C  ++ L  
Sbjct: 493 MRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELD----EFICISLVSLYV 548

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           + GK+  A KL  +   E + V W  ++  
Sbjct: 549 QCGKILLA-KLFFDNMEEKNLVCWNTMING 577



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 191/384 (49%), Gaps = 25/384 (6%)

Query: 14  PSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD 73
           P   +  FS     P+ S +   +N+S     F   C   +L +A   + +     V + 
Sbjct: 37  PPKSSHLFS-----PIISSHKKQQNASK---HFHNLCNTGNLNQAFNFLQSNLNDVVSSS 88

Query: 74  SVTYAELI----KCCLARHAVEEAKLVHNHV-LSGGFEPETFLVNILLNMHVKFSLLEEA 128
           +    +LI    + C     +E  + +HN +  S  F+ +  L+  L+ M+       ++
Sbjct: 89  NSKPKQLIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDS 148

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM--LREGVRPNMFTYSAVLRACD 186
            ++F+    +N+  W  ++S Y    +   A+ + + M  L E V P+ FT   V++AC 
Sbjct: 149 CLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFV-PDNFTLPCVIKACV 207

Query: 187 SLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
            +  +R    +H   +K    SDVFV +ALI +Y K G + +A  VF++MP R+LV WNS
Sbjct: 208 GVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNS 267

Query: 244 IIGGFAQNSDVDEALNLYKRMKRA--GFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           ++    +N   +E+  L+K +     G   D +T+ +V+  C     + LG   H   LK
Sbjct: 268 VMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALK 327

Query: 302 YD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
                +L +N++LLDMY KCG L +A  +F    +K+VISW++MI G +++   + A +L
Sbjct: 328 LGLCGELKVNSSLLDMYSKCGYLCEARVLFDTN-EKNVISWNSMIGGYSKDRDFRGAFEL 386

Query: 360 FESMKVS-RIKPNYITIVGVLFAC 382
              M++  ++K N +T++ VL  C
Sbjct: 387 LRKMQMEDKVKVNEVTLLNVLPVC 410


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/679 (35%), Positives = 364/679 (53%), Gaps = 78/679 (11%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           S+L+  F++F        A+     M   G+  D+      +K C    A++ A+ VH  
Sbjct: 83  STLIYAFSKF---HQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGI 139

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
               GF+ ++F+ + L++M++K + + +A  +FD+M E +VVSW+ +++AY      D+A
Sbjct: 140 ASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEA 199

Query: 160 LELLIFMLREGVRPNMFTY-----------------------------------SAVLRA 184
             L   M   GV+PN+ ++                                   S+VL A
Sbjct: 200 KRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPA 259

Query: 185 C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL--- 238
               + L++   +H  +IK G  SD  V SALID+Y K         VF++M   D+   
Sbjct: 260 VGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSC 319

Query: 239 --------------------------------VVWNSIIGGFAQNSDVDEALNLYKRMKR 266
                                           V W S+I   +QN    EAL L++ M+ 
Sbjct: 320 NAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQI 379

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLED 324
           AG   +  T+  +L AC  +A L  G   H   L+     D+ + +AL+DMY KCG ++ 
Sbjct: 380 AGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQA 439

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           +   F  +  K+++ W+ +I+G A +G ++EA+++F+ M+ S  KP+ I+   VL ACS 
Sbjct: 440 SRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQ 499

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           +G  E+G  +F SM   YGI+   EHY+CM+ LL RAGKL++A  +I  MP  PDA  W 
Sbjct: 500 SGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWG 559

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
           ALL +C+VH N  L   AA+K+  L+P +PG YILLSNIYA+   W+EV  VR  M+ +G
Sbjct: 560 ALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKG 619

Query: 505 ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLE 564
           + K PGCSWIEV  ++H     D SHPQ+ +I + L  L  ++  +GY P+ N+VLQD+E
Sbjct: 620 LRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVLQDVE 679

Query: 565 GEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIR 624
            + KE  +  HSEKLA+VFGL++   G  +++ KNLRICGDCH   K  +  E + I +R
Sbjct: 680 EQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFISSFERREIFVR 739

Query: 625 DPIRYHHFQDGNCSCGDYW 643
           D  R+HHF++G CSCGDYW
Sbjct: 740 DTNRFHHFKEGACSCGDYW 758



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 121/442 (27%), Positives = 206/442 (46%), Gaps = 81/442 (18%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           ++ + +  H H+L  G   +T L   LL+ +       +A ++ D +PE NV S++T+I 
Sbjct: 28  SLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIY 87

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKV-GFE 204
           A+        AL     ML  G+ P+     + ++AC  L  L   RQ+H GI  V GF+
Sbjct: 88  AFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVH-GIASVSGFD 146

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
           SD FV+S+L+ +Y K  ++R+A  VF+ M   D+V W++++  +A+   VDEA  L+  M
Sbjct: 147 SDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEM 206

Query: 265 KRA-----------------------------------GFAADQSTLTSVLRACTGLALL 289
             +                                   GF  D +T++SVL A   L  L
Sbjct: 207 GDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDL 266

Query: 290 ELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRM--------------- 332
            +G  +H +V+K     D  +++AL+DMY KC    +   VF +M               
Sbjct: 267 VMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGL 326

Query: 333 --------------------IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
                               ++ +V+SW++MI+  +QNG   EAL+LF  M+++ +KPN 
Sbjct: 327 SRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNS 386

Query: 373 ITIVGVLFACSH-AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
           +TI  +L AC + A  +     H  S+++  GI       S +ID+  + G++Q +    
Sbjct: 387 VTIPCLLPACGNIAALMHGKAAHCFSLRR--GISTDVYVGSALIDMYAKCGRIQASRICF 444

Query: 432 HEMPYEPDAVTWRALLGACKVH 453
             +P + + V W A++    +H
Sbjct: 445 DGIPTK-NLVCWNAVIAGYAMH 465


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/601 (37%), Positives = 339/601 (56%), Gaps = 17/601 (2%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           +L +A++    MQ  G+R +S  Y  L++ CL    +E  K +H+HV+         +  
Sbjct: 168 ELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVET 227

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            + NM+V+   LE A+++FD M  +N V+WT ++  Y  AK  + ALEL   M  EGV  
Sbjct: 228 AICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVEL 287

Query: 174 NMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           + F +S VL+ C  L    + RQ+H  I+K+G ES+V V + L+D Y K G++ +A   F
Sbjct: 288 DEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSF 347

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
             +   + V W+++I GF+Q+  +++ + ++  ++  G   +    TSV +AC   A L 
Sbjct: 348 GRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLN 407

Query: 291 LGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
           +G+Q H   +K      L   +A++ MY KCG L+ A   F  + + D ++W+ +ISG A
Sbjct: 408 MGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYA 467

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
            +G + EAL  F  M+   ++PN +T + VL ACSH+G V +   +  SM + YG+ P  
Sbjct: 468 YHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTI 527

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           +HY CMID   RAG LQEA++LI+ MP+EPDA++W++LLG C  H +  L   AA+ +  
Sbjct: 528 DHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFR 587

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           LDP D   YILL N+Y+   KW+E   VRK M  R + KE  CSWI V  Q+H F V D 
Sbjct: 588 LDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHRFVVGDR 647

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE------QKEDSIQYHSEKLAIV 582
            HPQ + I   L+     ++      D+   L + E +       +++ +  HSEKLAI 
Sbjct: 648 HHPQTEAIYSKLEEFKCSVI------DSPVRLLNEEDDVSCSLSARKEQLLDHSEKLAIA 701

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           FGL+S      I + KNLR C DCH F K  + +  + IV+RD  R+HHF+ G CSC DY
Sbjct: 702 FGLISTEDNAPILVFKNLRACRDCHEFGKQVSMVTGRQIVVRDSTRFHHFKSGKCSCNDY 761

Query: 643 W 643
           W
Sbjct: 762 W 762



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 207/415 (49%), Gaps = 9/415 (2%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111
           Q  L  A   +  M    V     +Y  L + C    ++ + +L+H+ +      P   +
Sbjct: 65  QGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSI 124

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV 171
            N LL M+       + Q +FD+M  +N+VSW  +ISAY      +KA+ L   M   G+
Sbjct: 125 ENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGI 184

Query: 172 RPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
           RPN   Y ++L++C     L + +Q+H  +I+    +++ V +A+ ++Y + G L  A+ 
Sbjct: 185 RPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKL 244

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           VF+ M  ++ V W  ++ G+ Q   ++ AL L+ RM   G   D+   + VL+ C GL  
Sbjct: 245 VFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLED 304

Query: 289 LELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
            ++G Q+H H++K   + ++ +   L+D Y KCG +E A   F R+ + + +SWS +ISG
Sbjct: 305 WDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISG 364

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGID 405
            +Q+G  ++ +K+F S++   +  N      V  AC+    +  G   H  ++K+  G+ 
Sbjct: 365 FSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKR--GLV 422

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
                 S M+ +  + G+L  A +    +  EPDAV W A++     H N   A+
Sbjct: 423 SYLYGESAMVTMYSKCGRLDYARRAFESID-EPDAVAWTAIISGYAYHGNAAEAL 476



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 6/203 (2%)

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHD 305
            ++   + EA +  K M  A  +    +   +  AC  L  L  G  +H  + +   +  
Sbjct: 62  LSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPS 121

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
             + N LL MYC CGS  D   VF  M+ K+++SW  +IS  A+NG  ++A++LF  M+ 
Sbjct: 122 GSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQA 181

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
           S I+PN    + +L +C    F+E G   H   ++     +   E   C  ++  R G L
Sbjct: 182 SGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAIC--NMYVRCGWL 239

Query: 425 QEAVKLIHEMPYEPDAVTWRALL 447
            E  KL+ +     +AVTW  L+
Sbjct: 240 -EGAKLVFDGMDAQNAVTWTGLM 261


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/632 (35%), Positives = 363/632 (57%), Gaps = 60/632 (9%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R+D ++   ++  C +  A+ + K +H++ +  G   + F+ N L++ + K   + +A  
Sbjct: 256 RSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVK 315

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE--------------------- 169
           +F+ M  ++VVSW  M++ Y  +     A EL   M +E                     
Sbjct: 316 VFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGC 375

Query: 170 --------------GVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFES------- 205
                         G  PN  T  ++L AC SL  L Q   +H   +K    S       
Sbjct: 376 SQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGG 435

Query: 206 -----DVFVRSALIDIYAKLGELRNAECVFNEMP--TRDLVVWNSIIGGFAQNSDVDEAL 258
                D+ V +ALID+Y+K    + A  +F+ +P   R++V W  +IGG+AQ  D ++AL
Sbjct: 436 DGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDAL 495

Query: 259 NLYKRM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL-----ILNNA 311
            ++  M  K    A +  T++ +L AC  LA L +G Q+H +V ++ H+       + N 
Sbjct: 496 KIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRH-HEYEPSVYFVANC 554

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+DMY KCG ++ A +VF  M +++ +SW++M+SG   +G  +EAL +F+ M+ +   P+
Sbjct: 555 LIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPD 614

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            I+ + +L+ACSH+G V+ G N+F  M++ Y +    EHY+C+IDLL R G+L +A K I
Sbjct: 615 DISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTI 674

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
            EMP EP AV W ALL AC+VH N +LA  A  K++N+  ++ G+Y L+SNIYAN+++W 
Sbjct: 675 QEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWK 734

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
           +VA +R+ M+  GI K PGCSW++  K   +F V D SHP   +I   L+ LI ++  +G
Sbjct: 735 DVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMG 794

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           Y P+TN+ L D++ E+K + +  HSEKLA+ +GL++ + G  IRI KNLR+CGDCH+   
Sbjct: 795 YVPETNFALHDVDDEEKNNLLSEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFT 854

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             +K+ +  I++RD  R+HHF++G+CSCG YW
Sbjct: 855 YISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 123/472 (26%), Positives = 210/472 (44%), Gaps = 61/472 (12%)

Query: 50  CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPET 109
           C+ RD+     A    +C  V      + ++I C L  +      +    + S  +    
Sbjct: 24  CFGRDVSPTHFASLLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPK 83

Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
            L   ++  ++     ++A  + +++     V W  ++  +      D+A+ +   MLR 
Sbjct: 84  SLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRA 143

Query: 170 GVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           G +P+ FT    L+AC  L      R LH  I   GFES+VFV +AL+ +Y++ G L +A
Sbjct: 144 GTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDA 203

Query: 227 ECVFNEMPTR---DLVVWNSIIGGFAQNSDVDEALNLYKRM------KRAGFAADQSTLT 277
             VF+E+  +   D++ WNSI+    + S+   AL L+  M      K     +D  ++ 
Sbjct: 204 SLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIV 263

Query: 278 SVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRM--- 332
           ++L AC  L  L    ++H + ++     D  + NAL+D Y KCGS+ DA+ VF+ M   
Sbjct: 264 NILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK 323

Query: 333 --------------------------------IQKDVISWSTMISGLAQNGYSQEALKLF 360
                                           I  DVI+WS +I+G AQ G SQEAL  F
Sbjct: 324 DVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAF 383

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKK----------FYGIDPGRE 409
           + M +   +PN +TI+ +L AC+  G +  G   H  S+KK            G      
Sbjct: 384 QQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLM 443

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMP-YEPDAVTWRALLGACKVHRNTDLAI 460
            Y+ +ID+  +    + A  +   +P  E + VTW  ++G    + +++ A+
Sbjct: 444 VYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDAL 495


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/562 (40%), Positives = 342/562 (60%), Gaps = 8/562 (1%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQMPERNVVSWTTMI 147
           +EE K  H  +L  G   ++F  + L+       +  ++ A  +F QM E     + TM+
Sbjct: 44  MEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELGSFQFNTMM 103

Query: 148 SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFE 204
             +      ++AL     M   GV+P+ FTY  +L+AC  L  +    Q+H  I+K+G E
Sbjct: 104 RGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLE 163

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
           +DVFV+++LI +Y K GE+     VF +M  R +  W+++I   A      + L L   M
Sbjct: 164 NDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDM 223

Query: 265 KRAGF-AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGS 321
              G+  A++S L SVL ACT L  L+LG  VH  +L+    L  I+  +L++MY KCGS
Sbjct: 224 SNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGS 283

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
           L   M +F +M +K+ +S+S MISGLA +GY +E L++F  M    ++P+ I  VGVL A
Sbjct: 284 LYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNA 343

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
           CSHAG V++G   F  MK  +GI+P  +HY CM+DL+GRAGK+ EA++LI  MP EP+ V
Sbjct: 344 CSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDV 403

Query: 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
            WR+LL A KVH N      AAK++  LD Q    Y++LSN+YA +Q+W++VA+ R  M 
Sbjct: 404 LWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVAKTRTNMF 463

Query: 502 ARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQ 561
           ++G+++ PG S +EV +++H F   D+ HPQ + + + L  +  +L   GY+PDT  VL 
Sbjct: 464 SKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYSPDTTQVLC 523

Query: 562 DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTI 621
           D++ E+K+  +  HS+KLAI + L+  +QG  IRI +NLR+C DCHT+ KL + + ++ I
Sbjct: 524 DVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRIVRNLRMCNDCHTYTKLISIIFDREI 583

Query: 622 VIRDPIRYHHFQDGNCSCGDYW 643
            +RD  R+HHF+DG CSC DYW
Sbjct: 584 TVRDRHRFHHFKDGACSCRDYW 605



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 144/287 (50%), Gaps = 10/287 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           GV+ D+ TY  L+K C    AVEE   VH H+L  G E + F+ N L++M+ K   +   
Sbjct: 126 GVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVC 185

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV-RPNMFTYSAVLRACDS 187
             +F+QM ER+V SW+ +I+A+    M    L LL  M  EG  R       +VL AC  
Sbjct: 186 CAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTH 245

Query: 188 LIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L  L   R +H  +++     +V V ++LI++Y K G L    C+F +M  ++ + ++ +
Sbjct: 246 LGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVM 305

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
           I G A +    E L ++  M   G   D      VL AC+   L++ G Q   + +K +H
Sbjct: 306 ISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQC-FNRMKLEH 364

Query: 305 DLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
            +         ++D+  + G +++A+ +   M ++ + + W +++S 
Sbjct: 365 GIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSA 411



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 143/309 (46%), Gaps = 38/309 (12%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRD 237
           ++L+ C ++   +Q H  I+K+G   D F  S L+   A    G +  A  +F +M    
Sbjct: 36  SLLKKCSNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELG 95

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
              +N+++ G  ++ + +EAL  YK M   G   D  T  ++L+AC  L  +E G QVH 
Sbjct: 96  SFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHA 155

Query: 298 HVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           H+LK   ++D+ + N+L+ MY KCG +    +VF +M ++ V SWS +I+  A  G   +
Sbjct: 156 HILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSD 215

Query: 356 ALKLFESMKVSRI-KPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGID-------- 405
            L+L   M      +     +V VL AC+H G ++ G + H   ++   G++        
Sbjct: 216 CLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLI 275

Query: 406 ---------------------PGREHYSCMIDLLGRAGKLQEAVKLIHEM---PYEPDAV 441
                                  +  YS MI  L   G  +E +++  EM     EPD +
Sbjct: 276 EMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDI 335

Query: 442 TWRALLGAC 450
            +  +L AC
Sbjct: 336 VYVGVLNAC 344


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/528 (42%), Positives = 325/528 (61%), Gaps = 10/528 (1%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE----GVRPNMFTYSA 180
           L  A+ LFD+MP R+  SW+ ++SA+        AL +   MLRE    GV  N FT S+
Sbjct: 109 LASARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGV-DNEFTASS 167

Query: 181 VLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
            L A  +       R+LHC +++ G ++D  V SAL D+YAK G + +A  VF+ MP RD
Sbjct: 168 ALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRD 227

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           +V W +++  +       E   L+ RM R+G   ++ T   VLRAC      +LG QVH 
Sbjct: 228 VVSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHG 287

Query: 298 HVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
            + K          +AL+ MY K G +  A+ VF  M + D++SW+ MISG AQNG   E
Sbjct: 288 RMTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDE 347

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           AL+ F+ +  S  +P+++T VGVL AC+HAG V+ G + F S+K  YGI+   +HY+C+I
Sbjct: 348 ALRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVI 407

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           DLL R+G  + A ++I+ M  +P+   W +LLG C++H+N  LA  AA+ +  ++P++P 
Sbjct: 408 DLLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPA 467

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
           TY+ L+NIYA+   +DEV   R+ M  +GITK P  SWIEV  ++H F V D  HPQ ++
Sbjct: 468 TYVTLANIYASVGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAEQ 527

Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
           +   LK L  K+   GY  DT +VL D+E EQK+  I YHSE+LA+ FG+++  +G  I+
Sbjct: 528 VYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAPIK 587

Query: 596 IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + KNLRICGDCHT  KL +K+  + I++RD  R+HHF++G+CSC DYW
Sbjct: 588 VFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 141/259 (54%), Gaps = 9/259 (3%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H HV+  G + +  + + L +M+ K   +++A+ +FD+MP R+VVSWT M+  Y DA+ 
Sbjct: 184 LHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARR 243

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSA 212
           + +   L + MLR G++PN FTY+ VLRAC       + +Q+H  + K       F  SA
Sbjct: 244 DGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESA 303

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           L+ +Y+K G++  A  VF  MP  DLV W ++I G+AQN   DEAL  +  + R+G   D
Sbjct: 304 LVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPD 363

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK----YDHDLILNNALLDMYCKCGSLEDAMSV 328
             T   VL AC    L++ G  +  H +K     +H       ++D+  + G  E A  +
Sbjct: 364 HVTFVGVLSACAHAGLVDKGLSI-FHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEM 422

Query: 329 FSRM-IQKDVISWSTMISG 346
            + M ++ +   W++++ G
Sbjct: 423 INTMSVKPNKFLWASLLGG 441



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 89/184 (48%), Gaps = 5/184 (2%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G++ +  TYA +++ C    + +  K VH  +         F  + L++M+ K+  +  A
Sbjct: 258 GIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVHMYSKYGDMGTA 317

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
             +F  MP+ ++VSWT MIS Y      D+AL     +LR G RP+  T+  VL AC   
Sbjct: 318 VRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVGVLSACAHA 377

Query: 189 IILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNS 243
            ++ +     H    + G E      + +ID+ ++ G    AE + N M  + +  +W S
Sbjct: 378 GLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEMINTMSVKPNKFLWAS 437

Query: 244 IIGG 247
           ++GG
Sbjct: 438 LLGG 441


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/613 (37%), Positives = 352/613 (57%), Gaps = 27/613 (4%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL-SGGFEPETFLVNILL 116
           A++ ++ M   GVR D VT+A  +  C     +   + +H  VL        +F+ + L+
Sbjct: 266 AVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALV 325

Query: 117 NMHVKFSLLEEAQVLFDQMPE--RNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRP 173
           +M+     +  A+ +FD +PE  R +  W  MI  Y  A M+++ALEL   M  E G  P
Sbjct: 326 DMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAP 385

Query: 174 NMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +  T S VL AC   +       +H  ++K G   + FV++AL+D+YA+LGE+  A  +F
Sbjct: 386 SETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIF 445

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK------------RAGFA----ADQS 274
             +  RD+V WN++I G        EA  L   M+              G A     +  
Sbjct: 446 AMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNI 505

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           TL ++L  C  LA    G ++H + +++  + D+ + +AL+DMY KCG L  + +VF R+
Sbjct: 506 TLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRL 565

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVS-RIKPNYITIVGVLFACSHAGFVEDG 391
            +++VI+W+ +I     +G   EA+ LF+ M       PN +T +  L ACSH+G V+ G
Sbjct: 566 PRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRG 625

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLGAC 450
              F  M++ +G+ P  + ++C++D+LGRAG+L EA  +I  M P E     W +LLGAC
Sbjct: 626 LELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGAC 685

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
           ++HRN +L   AA+++  L+P +   Y+LL NIY+ +  WD+   VR  MR +G+ KEPG
Sbjct: 686 RLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPG 745

Query: 511 CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKED 570
           CSWIE++  IH F   +SSHP   +++ H+  L +++   GYAPDT+ VL D++ ++K  
Sbjct: 746 CSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRREGYAPDTSCVLHDVDEDEKAA 805

Query: 571 SIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYH 630
            ++YHSEKLAI FGL+    G  IR+ KNLR+C DCH  AK  +KM  + IV+RD  R+H
Sbjct: 806 MLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRVCNDCHEAAKFMSKMVGRDIVLRDVRRFH 865

Query: 631 HFQDGNCSCGDYW 643
           HF+DG+CSCGDYW
Sbjct: 866 HFRDGSCSCGDYW 878



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 168/340 (49%), Gaps = 28/340 (8%)

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP-NMFTYSAVLRAC------DSLII 190
           R+ VS+ ++ISA C  +  ++AL+ L  ML EG    + FT  +VL AC      D   +
Sbjct: 131 RDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRL 190

Query: 191 LRQLHCGIIKVGF---ESDVFVRSALIDIYAKLGELRNAECVFNEMPTR------DLVVW 241
            R+ H   +K GF     + F  +AL+ +YA+LG + +A+ +F            D+V W
Sbjct: 191 GREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTW 250

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N++I    Q     EA+ +   M   G   D  T  S L AC+ L +L LG ++H  VLK
Sbjct: 251 NTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLK 310

Query: 302 YDHDLILN----NALLDMYCKCGSLEDAMSVFSRMIQ--KDVISWSTMISGLAQNGYSQE 355
            D DL  N    +AL+DMY     +  A  VF  + +  + +  W+ MI G AQ G  +E
Sbjct: 311 -DADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEE 369

Query: 356 ALKLFESMKV-SRIKPNYITIVGVLFACSHA-GFVEDGWNHFKSMKKFYGIDPGREHYSC 413
           AL+LF  M+  +   P+  T+ GVL AC+ + GF      H   +K+  G+   R   + 
Sbjct: 370 ALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKR--GMAGNRFVQNA 427

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           ++D+  R G++  A + I  M    D V+W  L+  C V 
Sbjct: 428 LMDMYARLGEMDVA-RRIFAMIDPRDVVSWNTLITGCVVQ 466


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/642 (38%), Positives = 363/642 (56%), Gaps = 43/642 (6%)

Query: 40  SSLLDDFTRFCYQRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHN 98
           +SL++ ++     RDL + A+     M   GV  + VT   +I  C     +E  K V +
Sbjct: 200 TSLINGYS----GRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCS 255

Query: 99  HVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
           ++   G E  T +VN L++M++K   +  A+ +FD+   +N+V + T++S Y   +    
Sbjct: 256 YISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASD 315

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALID 215
            L +L  ML++G RP+  T  + + AC     L + +  H  +++ G E    + +A+ID
Sbjct: 316 VLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIID 375

Query: 216 IYAKLGELRNAEC--------------------------------VFNEMPTRDLVVWNS 243
           +Y K G+ R A C                                +F+EM  RDLV WN+
Sbjct: 376 MYMKCGK-REAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNT 434

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD 303
           +IG   Q S  +EA+ L++ M+  G   D+ T+  +  AC  L  L+L   V  ++ K D
Sbjct: 435 MIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKND 494

Query: 304 --HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
              DL L  AL+DM+ +CG    AM VF RM ++DV +W+  I  +A  G ++ A++LF 
Sbjct: 495 IHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFN 554

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            M   ++KP+ +  V +L ACSH G V+ G   F SM+K +GI P   HY CM+DLLGRA
Sbjct: 555 EMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRA 614

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           G L+EAV LI  MP EP+ V W +LL AC+ H+N +LA  AA+K+  L P+  G ++LLS
Sbjct: 615 GLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLS 674

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
           NIYA++ KW +VA VR  M+ +G+ K PG S IEV   IH F   D SH +   I   L+
Sbjct: 675 NIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLE 734

Query: 542 HLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
            +  +L   GY PDT  VL D++ ++KE  +  HSEKLA+ +GL++  QG  IR+ KNLR
Sbjct: 735 EINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRVVKNLR 794

Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +C DCH+FAKL +K+ N+ I +RD  RYH F++G CSC DYW
Sbjct: 795 MCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/436 (28%), Positives = 211/436 (48%), Gaps = 46/436 (10%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   G+  D  T+  L+  C    A+ E   VH  VL  G E + F+ N L++ + +   
Sbjct: 121 MLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGK 180

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           ++  + LFD M ERNVVSWT++I+ Y    ++ +A+ L   M   GV PN  T   V+ A
Sbjct: 181 VDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISA 240

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C  L  L   +++   I ++G E    + +AL+D+Y K G++  A  +F+E   ++LV++
Sbjct: 241 CAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMY 300

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N+I+  +  +    + L +   M + G   D+ T+ S + AC  L  L +G   H +VL+
Sbjct: 301 NTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLR 360

Query: 302 -----YDHDLILNNALLDMYCKC-------------------------------GSLEDA 325
                +D+   ++NA++DMY KC                               G +E A
Sbjct: 361 NGLEGWDN---ISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELA 417

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F  M+++D++SW+TMI  L Q    +EA++LF  M+   I  + +T+VG+  AC + 
Sbjct: 418 WRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYL 477

Query: 386 GFVE-DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           G ++   W      K    +D   +  + ++D+  R G    A+ +   M  + D   W 
Sbjct: 478 GALDLAKWVCTYIEKNDIHVD--LQLGTALVDMFSRCGDPSSAMHVFKRME-KRDVSAWT 534

Query: 445 ALLGACKVHRNTDLAI 460
           A +G   +  NT+ AI
Sbjct: 535 AAIGVMAMEGNTEGAI 550



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 192/373 (51%), Gaps = 13/373 (3%)

Query: 143 WTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGII 199
           +  +I  Y  A + D+A+ L + ML  G+ P+ +T+  +L AC  ++ L    Q+H  ++
Sbjct: 98  YNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVL 157

Query: 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN 259
           K+G E D+FV ++LI  YA+ G++     +F+ M  R++V W S+I G++      EA++
Sbjct: 158 KMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVS 217

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV--HVHVLKYDHDLILNNALLDMYC 317
           L+ +M  AG   +  T+  V+ AC  L  LELG +V  ++  L  +   I+ NAL+DMY 
Sbjct: 218 LFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYM 277

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           KCG +  A  +F     K+++ ++T++S    + ++ + L + + M     +P+ +T++ 
Sbjct: 278 KCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLS 337

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
            + AC+  G +  G +    + +  G++      + +ID+  + GK + A K+   MP +
Sbjct: 338 TIAACAQLGDLSVGKSSHAYVLR-NGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNK 396

Query: 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497
              VTW +L+       + +LA     ++L  D     T I           ++E  E+ 
Sbjct: 397 T-VVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMI---GALVQVSMFEEAIELF 452

Query: 498 KTMRARGITKEPG 510
           + M+ +GI   PG
Sbjct: 453 REMQNQGI---PG 462



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 158/322 (49%), Gaps = 12/322 (3%)

Query: 179 SAVLRACDSLIILRQLHCGIIKVGF--ESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           S +L  C +L  L+QLHC ++K G          + LI    ++G L + +   N     
Sbjct: 29  SKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDD 88

Query: 237 D-----LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           D     L ++N +I G+A     D+A+ LY +M   G   D+ T   +L AC+ +  L  
Sbjct: 89  DGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSE 148

Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G QVH  VLK   + D+ ++N+L+  Y +CG ++    +F  M++++V+SW+++I+G + 
Sbjct: 149 GVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSG 208

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
              S+EA+ LF  M  + ++PN +T+V V+ AC+    +E G      + +  G++    
Sbjct: 209 RDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISEL-GMELSTI 267

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
             + ++D+  + G +  A ++  E     + V +  ++     H      +    ++L  
Sbjct: 268 MVNALVDMYMKCGDICAARQIFDECA-NKNLVMYNTIMSNYVHHEWASDVLVILDEMLQK 326

Query: 470 DPQDPGTYILLSNIYANSQKWD 491
            P+ P    +LS I A +Q  D
Sbjct: 327 GPR-PDKVTMLSTIAACAQLGD 347


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/612 (37%), Positives = 368/612 (60%), Gaps = 25/612 (4%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++  FT+    R+   A+ A H M+  GV  ++ TY+ ++  C +  A++  K +H+ 
Sbjct: 286 TAIISGFTQSLKFRE---AITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSR 342

Query: 100 VLSGGFEPETFLVNILLNMHVKFS-LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
           V+  G E +  + N L++M++K S ++E+A   F  +   NV+SWT++I+ + +  + ++
Sbjct: 343 VVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEE 402

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALID 215
           ++++   M   GVRPN FT S +L AC    SL   R+LH  IIK   ++DV V +AL+D
Sbjct: 403 SIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVD 462

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
            YA LG + +A  V + M  RD++ + S+     Q  + + ALN+   M +     D  +
Sbjct: 463 AYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFS 522

Query: 276 LTSVLRACTGLALLELGTQVHVHVLKYDHD--LILNNALLDMYCKCGSLEDAMSVFSRMI 333
           L S L A  G+ ++E G Q+H + +K      + ++N L+D+Y KCG + DA   F  + 
Sbjct: 523 LASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEIT 582

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393
           + D +SW+ +I GLA NG+   AL  FE M+++ ++P+ IT + VL+ACSH G V+ G +
Sbjct: 583 EPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMGLD 642

Query: 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           +F+SM++ +GI P  +HY C++DLLGRAG+L+EA+ +I  MP++PDA+ ++ LLGACK+H
Sbjct: 643 YFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTLLGACKLH 702

Query: 454 RNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSW 513
            N  L    A++ L LDP DP  Y+LL+N+Y +S + +   + R+ MR RG+ K PG SW
Sbjct: 703 GNIPLGEHMARQGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRMMRERGVRKNPGQSW 762

Query: 514 IEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL--VGVGYAPDTNYVLQDLEGEQKEDS 571
           +E    +H F   D+SHPQI KI++ ++ LI +    G+ Y              Q+  +
Sbjct: 763 MEERNMVHLFTAGDTSHPQIGKIHEKIESLIAQFRNQGIWY--------------QENRA 808

Query: 572 IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHH 631
           + +HSEKLA+ FGL+S      IRI KN+RIC DCH F     ++ ++ I++RD  R+H 
Sbjct: 809 LAHHSEKLAVAFGLISTPPKAPIRIIKNIRICRDCHDFIMNVTRLVDREIIVRDGNRFHS 868

Query: 632 FQDGNCSCGDYW 643
           F+ G CSC  YW
Sbjct: 869 FKKGECSCRGYW 880



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/384 (33%), Positives = 210/384 (54%), Gaps = 16/384 (4%)

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
           +++  C +R +V +   +H+ ++  GF+ + FL N LL+++ K   + EA+ LFD+MP R
Sbjct: 21  DIVSFCNSR-SVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCR 79

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCG- 197
           +V SWT ++SAY     +++ALEL   ML  G  PN FT S  LR+C +   LR+ + G 
Sbjct: 80  DVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSA---LREFNHGT 136

Query: 198 -----IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
                + K GF+S+  + SALID Y+K G  + A  VF  M   D+V W  ++  F +  
Sbjct: 137 RFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAG 196

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNN 310
              +AL LY RM + G A ++ T   +L A + L  L  G  VH H++ +  + +L+L  
Sbjct: 197 SWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLG-LNYGKLVHAHLMMWRIELNLVLKT 255

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           AL+DMYCKC S+EDA+ V    ++ DV  W+ +ISG  Q+   +EA+  F  M+ S + P
Sbjct: 256 ALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVP 315

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR-AGKLQEAVK 429
           N  T  G+L ACS    ++ G     S     G++      + ++D+  + +  +++AV+
Sbjct: 316 NNFTYSGILNACSSILALDLG-KQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVR 374

Query: 430 LIHEMPYEPDAVTWRALLGACKVH 453
               +   P+ ++W +L+     H
Sbjct: 375 AFRGIA-SPNVISWTSLIAGFSEH 397



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 180/331 (54%), Gaps = 5/331 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++   +M   G   +  T +  ++ C A             V   GF+    L + L++
Sbjct: 100 ALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALID 159

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            + K    +EA  +F+ M   ++VSWT M+S++ +A    +AL+L   M++ GV PN FT
Sbjct: 160 FYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFT 219

Query: 178 YSAVLRACDSLII--LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235
           +  +L A   L +   + +H  ++    E ++ +++AL+D+Y K   + +A  V      
Sbjct: 220 FVKLLAASSFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLE 279

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
            D+ +W +II GF Q+    EA+  +  M+ +G   +  T + +L AC+ +  L+LG Q+
Sbjct: 280 YDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQI 339

Query: 296 HVHVL--KYDHDLILNNALLDMYCKCGSL-EDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           H  V+    ++D+ + N+L+DMY KC ++ EDA+  F  +   +VISW+++I+G +++G 
Sbjct: 340 HSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGL 399

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACS 383
            +E++K+F +M+   ++PN  T+  +L AC 
Sbjct: 400 EEESIKVFGAMQGVGVRPNSFTLSTILGACG 430


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/590 (36%), Positives = 360/590 (61%), Gaps = 11/590 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   GV+ +  T++  +K C A   VE    +H   +  GFE  + + N  ++M+ K   
Sbjct: 96  MGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGR 155

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +  A+ +F++MP RN+VSW  MI+ +       K+L L   M  +G  P+ FT+++ L+A
Sbjct: 156 IGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKA 215

Query: 185 CDSLIILR---QLHCGIIKVGFESDV--FVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
           C +L  +R   Q+H  +I  GF   +   + SA++D+YAK G L  A+ VF+ +  ++L+
Sbjct: 216 CGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLI 275

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
            W+++I GFAQ  ++ EA++L+++++ +    D   L+ ++     LAL+E G Q+H ++
Sbjct: 276 SWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYI 335

Query: 300 LKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           LK     D+ + N+++DMY KCG  E+A  +FS M  ++V+SW+ MI+G  ++G  ++A+
Sbjct: 336 LKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAI 395

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
            LF  M++  I+ + +  + +L ACSH+G + +   +F  +   + + P  EHY+CM+D+
Sbjct: 396 HLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDI 455

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           LGRAG+L+EA  LI  M  +P+   W+ LL AC+VH N ++     + +  +D  +P  Y
Sbjct: 456 LGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNY 515

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           +++SNIYA +  W E   VRK ++A+G+ KE G SW+E+NK+IH F   D +HP  +KI+
Sbjct: 516 VMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIHFFYGGDDTHPLTEKIH 575

Query: 538 KHLKHLIQKLV-GVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS---LTQGKT 593
           + LK + +++   VGYA    + L D+E E KE++++ HSEKLAI   L+      +G  
Sbjct: 576 EMLKEMERRVKEEVGYAYGLRFALHDVEEESKEENLRVHSEKLAIGLALVCDGMEKKGGV 635

Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           IR+ KNLR+CGDCH F K  +K+  +  V+RD  R+H F+DG CSCGDYW
Sbjct: 636 IRVFKNLRVCGDCHEFIKGLSKILKKVFVVRDANRFHRFEDGLCSCGDYW 685



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/393 (34%), Positives = 215/393 (54%), Gaps = 15/393 (3%)

Query: 78  AELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE 137
           A+L++ C      ++   VH   ++ GF  +  + N L++M+ K S ++ A  +FD+M E
Sbjct: 8   AKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLE 67

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QL 194
           RNVVSWT ++  Y        +L LL  M   GV+PN FT+S  L+AC +L ++    Q+
Sbjct: 68  RNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQI 127

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
           H   +K GFE    V +A ID+Y+K G +  AE VFN+MP R+LV WN++I G     + 
Sbjct: 128 HGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNG 187

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL----ILNN 310
            ++L L++RM+  G   D+ T TS L+AC  L  +  GTQ+H  ++     +    I+ +
Sbjct: 188 RKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIAS 247

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK--VSRI 368
           A++D+Y KCG L +A  VF R+ QK++ISWS +I G AQ G   EA+ LF  ++  VS +
Sbjct: 248 AIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNV 307

Query: 369 KPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
               ++I+  +FA      VE G   H   +K   G+D      + +ID+  + G  +EA
Sbjct: 308 DGFVLSIMMGVFA--DLALVEQGKQMHCYILKVPSGLDISVA--NSIIDMYLKCGLTEEA 363

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            +L  EM    + V+W  ++     H   + AI
Sbjct: 364 ERLFSEMQVR-NVVSWTVMITGYGKHGLGEKAI 395



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 164/346 (47%), Gaps = 48/346 (13%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF--EPETFLVNI 114
           +++     MQ  G   D  T+   +K C A  A+     +H  +++ GF       + + 
Sbjct: 189 KSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASA 248

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV-RP 173
           +++++ K   L EAQ +FD++ ++N++SW+ +I  +       +A++L    LRE V   
Sbjct: 249 IVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLF-RQLRESVSNV 307

Query: 174 NMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           + F  S ++     L ++   +Q+HC I+KV    D+ V +++ID+Y K G    AE +F
Sbjct: 308 DGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLF 367

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           +EM  R++V W  +I G+ ++   ++A++L+ RM+  G   D+    ++L AC+      
Sbjct: 368 SEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACS------ 421

Query: 291 LGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-----IQKDVISWSTMIS 345
                                        G + ++   FSR+     ++ ++  ++ M+ 
Sbjct: 422 ---------------------------HSGLIRESQEYFSRLCNNHQMKPNIEHYACMVD 454

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
            L + G  +EA  L E+MK   +KPN      +L AC   G +E G
Sbjct: 455 ILGRAGQLKEAKNLIENMK---LKPNEGIWQTLLSACRVHGNLEIG 497



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 102/187 (54%), Gaps = 16/187 (8%)

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSV 328
           +++  L  +LR C+   L + G QVH     + +  DLI+NN L+DMY KC  ++ A SV
Sbjct: 2   SERQRLAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSV 61

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           F RM++++V+SW+ ++ G  Q G ++ +L L   M  S +KPN  T    L AC   G V
Sbjct: 62  FDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVV 121

Query: 389 EDGWNHFKSMKKFYG--IDPGREHYSCM----IDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
           E+G        + +G  +  G E  S +    ID+  + G++  A ++ ++MP+  + V+
Sbjct: 122 ENGM-------QIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFR-NLVS 173

Query: 443 WRALLGA 449
           W A++  
Sbjct: 174 WNAMIAG 180


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/618 (38%), Positives = 346/618 (55%), Gaps = 52/618 (8%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   GVR DS TY   +  C    ++   K +H  V+    + + ++ + L+ ++ K   
Sbjct: 261 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS 320

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            +EA+ +F+ + +RN VSWT +I      +   K++EL   M  E +  + F  + ++  
Sbjct: 321 FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISG 380

Query: 185 CDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV-- 239
           C +   L + RQLH   +K G    + V ++LI +YAK G+L+NAE VF+ M  RD+V  
Sbjct: 381 CFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSW 440

Query: 240 -----------------------------VWNSIIGGFAQNSDVDEALNLYKRM-KRAGF 269
                                         WN+++G + Q+   ++ L +Y  M  +   
Sbjct: 441 TSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDV 500

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDA 325
             D  T  ++ R C  +   +LG Q+  H +K    LILN    NA + MY KCG + +A
Sbjct: 501 TPDWVTYVTLFRGCADIGANKLGDQIIGHTVK--AGLILNVSVANAAITMYSKCGRISEA 558

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F  +  KDV+SW+ MI+G +Q+G  ++A K F+ M     KP+YI+ V VL  CSH+
Sbjct: 559 QKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHS 618

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G V++G  +F  M + +GI PG EH+SCM+DLLGRAG L EA  LI +MP +P A  W A
Sbjct: 619 GLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGA 678

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LL ACK+H N +LA  AAK +  LD  D G+Y+LL+ IY+++ K D+ A+VRK MR +GI
Sbjct: 679 LLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGI 738

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            K PG SW+EV  ++H F   D SHPQ+  I   L  L++K+  +GY          +  
Sbjct: 739 KKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKLDELMEKIAHLGY----------VRT 788

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           E     I +HSEKLA+ FG+MSL     I I KNLRICGDCHT  KL + + ++  VIRD
Sbjct: 789 ESPRSEI-HHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRD 847

Query: 626 PIRYHHFQDGNCSCGDYW 643
            +R+HHF+ G+CSCGDYW
Sbjct: 848 GVRFHHFKSGSCSCGDYW 865



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 167/306 (54%), Gaps = 9/306 (2%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
            P  F  N +L  + K   ++ A   F+ M ER+VVSW  MI+A   +    +AL L++ 
Sbjct: 201 RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVE 260

Query: 166 MLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           M R+GVR +  TY++ L AC  L  L   +QLH  +I+   + D +V SALI++YAK G 
Sbjct: 261 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS 320

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
            + A+ VFN +  R+ V W  +IGG  Q     +++ L+ +M+    A DQ  L +++  
Sbjct: 321 FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISG 380

Query: 283 CTGLALLELGTQVHVHVLKYDHD--LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           C     L LG Q+H   LK  H+  ++++N+L+ +Y KCG L++A  VFS M ++D++SW
Sbjct: 381 CFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSW 440

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           ++MI+  +Q G   +A + F+ M       N IT   +L A    G  EDG   + +M  
Sbjct: 441 TSMITAYSQIGNIIKAREFFDGMDTR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLS 496

Query: 401 FYGIDP 406
              + P
Sbjct: 497 QKDVTP 502



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 198/456 (43%), Gaps = 65/456 (14%)

Query: 43  LDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLS 102
           L D  R C  R      +A+H                L+   LA     +  L+H +   
Sbjct: 7   LADALRSCGSRGALAGARALHG--------------RLVTVGLASAVFLQNTLLHAYFSC 52

Query: 103 GGF------------EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
           G              EP     NI++N + K   L +A+ LFD+MP R+V SW T++S Y
Sbjct: 53  GALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGY 112

Query: 151 CDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESD 206
             A+     LE  + M R G   PN FT+  V+++C +L    +  QL     K  F  D
Sbjct: 113 FQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGD 172

Query: 207 VFVRSALIDI-------------------------------YAKLGELRNAECVFNEMPT 235
             V +AL+D+                               YAKL  + +A   F +M  
Sbjct: 173 PDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAE 232

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
           RD+V WN +I   +Q+  V EAL L   M R G   D +T TS L AC  L  L  G Q+
Sbjct: 233 RDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQL 292

Query: 296 HVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H  V++     D  + +AL+++Y KCGS ++A  VF+ +  ++ +SW+ +I G  Q    
Sbjct: 293 HAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECF 352

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
            ++++LF  M+   +  +   +  ++  C +   +  G     S+    G +      + 
Sbjct: 353 SKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLG-RQLHSLCLKSGHNRAIVVSNS 411

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           +I L  + G LQ A  +   M  E D V+W +++ A
Sbjct: 412 LISLYAKCGDLQNAEFVFSSMS-ERDIVSWTSMITA 446



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 147/345 (42%), Gaps = 47/345 (13%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
             ++++  + M+   +  D    A LI  C  R  +   + +H+  L  G      + N 
Sbjct: 352 FSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNS 411

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL----------- 163
           L++++ K   L+ A+ +F  M ER++VSWT+MI+AY       KA E             
Sbjct: 412 LISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITW 471

Query: 164 ---------------------IFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGII 199
                                  + ++ V P+  TY  + R C  +   +   Q+    +
Sbjct: 472 NAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTV 531

Query: 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN 259
           K G   +V V +A I +Y+K G +  A+ +F+ +  +D+V WN++I G++Q+    +A  
Sbjct: 532 KAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAK 591

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELG-------TQVHVHVLKYDHDLILNNAL 312
            +  M   G   D  +  +VL  C+   L++ G       T+VH      +H     + +
Sbjct: 592 TFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEH----FSCM 647

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVIS-WSTMISGLAQNGYSQEA 356
           +D+  + G L +A  +  +M  K     W  ++S    +G  + A
Sbjct: 648 VDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELA 692



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 25/226 (11%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEE 92
           N IT N+  +L  + +   + D  +   AM + +   V  D VTY  L + C    A + 
Sbjct: 467 NAITWNA--MLGAYIQHGAEEDGLKMYSAMLSQK--DVTPDWVTYVTLFRGCADIGANKL 522

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
              +  H +  G      + N  + M+ K   + EAQ LFD +  ++VVSW  MI+ Y  
Sbjct: 523 GDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQ 582

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVG-FESDVFVR- 210
             M  +A +    ML +G +P+  +Y AVL  C         H G+++ G    D+  R 
Sbjct: 583 HGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCS--------HSGLVQEGKLYFDMMTRV 634

Query: 211 ----------SALIDIYAKLGELRNAECVFNEMPTRDLV-VWNSII 245
                     S ++D+  + G L  A+ + ++MP +    VW +++
Sbjct: 635 HGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALL 680



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 11/128 (8%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHN-----HVLSGGFEPETFL 111
           +A K    M   G + D ++Y  ++  C     V+E KL  +     H +S G E  + +
Sbjct: 588 QAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCM 647

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVS-WTTMISAYCDAKMNDKALELLIFMLREG 170
           V++L     +   L EA+ L D+MP +     W  ++SA C    ND+  EL    + E 
Sbjct: 648 VDLL----GRAGHLTEAKDLIDKMPMKPTAEVWGALLSA-CKIHGNDELAELAAKHVFEL 702

Query: 171 VRPNMFTY 178
             P+  +Y
Sbjct: 703 DSPDSGSY 710


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/659 (36%), Positives = 378/659 (57%), Gaps = 54/659 (8%)

Query: 2   ILKAVSKLKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKA 61
           ++  +S  + T P + A   S+   P V S        +SLL  + R     D  R  + 
Sbjct: 85  LISGLSLRRQTLPDAAAALASIPFPPSVVSF-------TSLLRGYVRHGLLADAIRLFQQ 137

Query: 62  MHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV--NILLNMH 119
           M          + V+Y  L+   L    V EA+ + + +      P+  +V    +L+ +
Sbjct: 138 MP-------ERNHVSYTVLLGGLLDAGRVNEARRLFDEM------PDRDVVAWTAMLSGY 184

Query: 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
            +   + EA+ LFD+MP+RNVVSWT MIS Y      + A +L   M       N  +++
Sbjct: 185 CQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWT 240

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESD------------VFVRSALIDIYAKLGELRNAE 227
           A+L              G I+ G   D            V   +A++  + + G +  A+
Sbjct: 241 AML-------------VGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAK 287

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            VF +M  RD   W+++I  + QN  + EAL+ ++ M   G   +  ++ S+L  C  LA
Sbjct: 288 TVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALA 347

Query: 288 LLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
           +L+ G +VH  +L+  +D D+   +AL+ MY KCG+L+ A  VF     KD++ W++MI+
Sbjct: 348 VLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMIT 407

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           G AQ+G  ++AL +F  M+++ + P+ IT +G L ACS+ G V++G   F SM     I 
Sbjct: 408 GYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIR 467

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
           PG EHYSCM+DLLGR+G ++EA  LI  MP EPDAV W AL+GAC++HRN ++A  AAKK
Sbjct: 468 PGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKK 527

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
           +L L+P + G Y+LLS+IY +  +W++ +++RK + +R + K PGCSWIE +K++H F  
Sbjct: 528 LLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTS 587

Query: 526 ADS-SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFG 584
            D  +HP+   I + L+ L   L+  GY+ D ++VL D++ EQK  S++YHSE+ A+ +G
Sbjct: 588 GDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYG 647

Query: 585 LMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L+ + +G  IR+ KNLR+CGDCH+  KL AK+ ++ IV+RD  R+HHF+DG CSC DYW
Sbjct: 648 LLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 136/332 (40%), Gaps = 72/332 (21%)

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR---- 266
           +A I   A+ G +  A   F  MP R    +N+++ G+ +N   D AL L++RM      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 267 ------AGFAADQSTL-------------------TSVLRACTGLALLELGTQVHVHVLK 301
                 +G +  + TL                   TS+LR      LL    ++   + +
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 302 YDH-----------------------------DLILNNALLDMYCKCGSLEDAMSVFSRM 332
            +H                             D++   A+L  YC+ G + +A ++F  M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
            +++V+SW+ MISG AQNG    A KLFE M     + N ++   +L     AG VED  
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMP----ERNEVSWTAMLVGYIQAGHVEDAA 256

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGK-LQEAVKLIHEMPYEPDAVTWRALLGACK 451
             F +M       P     +C   ++G   + + +A K + E   E D  TW A++ A +
Sbjct: 257 ELFNAM-------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYE 309

Query: 452 VHRNTDLAICAAKKIL--NLDPQDPGTYILLS 481
            +     A+   +++L   + P  P    +L+
Sbjct: 310 QNEFLMEALSTFREMLWRGVRPNYPSVISILT 341


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/571 (38%), Positives = 347/571 (60%), Gaps = 40/571 (7%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GV 171
           N +++ H++  L++ AQV F+QM ER+VVSW  MIS Y     + +AL++   ML +   
Sbjct: 215 NTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSS 274

Query: 172 RPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFES----------------------- 205
           +P+ FT ++ L AC   ++L + +Q+H  II+  F++                       
Sbjct: 275 KPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQK 334

Query: 206 ----------DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
                     DV   +AL+D Y KLG++  A  +F+ +  RD+V W ++I G+ QN    
Sbjct: 335 IIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQ 394

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALL 313
           +A+ L++ M + G   +  TL ++L   + LA L+ G Q+H    +  +   + ++NAL+
Sbjct: 395 DAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALI 454

Query: 314 DMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
            MY K GS+ DA  VF+ +  ++D I+W++MI  LAQ+G  +EAL LFE M  + IKP++
Sbjct: 455 TMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDH 514

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           IT VGVL AC+H G VE G +++  M+  + I P   HY+CMIDL GRAG LQEA   I 
Sbjct: 515 ITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIE 574

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
            MP EPD + W +LL +CKVH+N +LA  AA+++L ++P++ G Y  L+N+Y+   +W+ 
Sbjct: 575 NMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWEN 634

Query: 493 VAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGY 552
            A +RK+M+ +G+ K+ G SW+++  ++H F V D  HPQ D I + +  + +++  +G+
Sbjct: 635 AANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGF 694

Query: 553 APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
            PDT  VL DLE E KE  + +HSEKLAI FGL+   +  T+RI KNLR+C DCH+  K 
Sbjct: 695 VPDTESVLHDLEEELKEQILSHHSEKLAIAFGLICTPENTTLRIMKNLRVCNDCHSAIKF 754

Query: 613 TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +K+  + I++RD  R+HHF++G CSC DYW
Sbjct: 755 ISKLVGREIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 207/440 (47%), Gaps = 72/440 (16%)

Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
           F  NI+L+ + K   LEEA  +F++MPE + VSWT MI  Y      + A+ +   M+ +
Sbjct: 80  FSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSD 139

Query: 170 GVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
            V P  FT + VL +C   + L I R++H  ++K G  S + V ++L+++YAK G+   A
Sbjct: 140 DVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTA 199

Query: 227 ECVFN-------------------------------EMPTRDLVVWNSIIGGFAQNSDVD 255
           + VF+                               +M  RD+V WN++I G+ Q+    
Sbjct: 200 KIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDR 259

Query: 256 EALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH---------- 304
           EAL+++ +M   +    D+ TL S L AC  L  L+LG Q+H H+++ +           
Sbjct: 260 EALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNAL 319

Query: 305 -------------------------DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
                                    D+I   ALLD Y K G +  A  +F  +  +DV++
Sbjct: 320 ISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVA 379

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           W+ MI G  QNG++Q+A++LF SM     KPN  T+  +L   S    ++ G     S  
Sbjct: 380 WTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASAT 439

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
           +  G        + +I +  ++G + +A  + + + ++ D +TW +++ A   H   + A
Sbjct: 440 R-SGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEA 498

Query: 460 ICAAKKIL-NLDPQDPGTYI 478
           +   +++L N    D  TY+
Sbjct: 499 LTLFERMLENGIKPDHITYV 518



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 158/317 (49%), Gaps = 43/317 (13%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVL--------------------SGGFE---- 106
           + D  T A  +  C     ++  K +H H++                    SGG E    
Sbjct: 275 KPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQK 334

Query: 107 --PETFLVNI-------LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND 157
              ++ + N+       LL+ +VK   +  A+ +FD +  R+VV+WT MI  Y     N 
Sbjct: 335 IIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQ 394

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALI 214
            A+EL   M++EG +PN +T + +L    SL  L   RQ+H    + G  S V V +ALI
Sbjct: 395 DAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALI 454

Query: 215 DIYAKLGELRNAECVFNEMP-TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
            +YAK G + +A  VFN +   RD + W S+I   AQ+   +EAL L++RM   G   D 
Sbjct: 455 TMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDH 514

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNA----LLDMYCKCGSLEDAMSVF 329
            T   VL ACT + L+E G + + ++++  H +I   +    ++D++ + G L++A +  
Sbjct: 515 ITYVGVLSACTHVGLVEQG-RSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFI 573

Query: 330 SRM-IQKDVISWSTMIS 345
             M I+ DVI+W ++++
Sbjct: 574 ENMPIEPDVIAWGSLLA 590



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 146/333 (43%), Gaps = 89/333 (26%)

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           + +H  IIK G    VF+ + L++ YAK G + +A  VF+EMP + +  WN I+ G+A+ 
Sbjct: 33  KSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKG 92

Query: 252 SDVDEA-------------------------------LNLYKRMKRAGFAADQSTLTSVL 280
             ++EA                               + +++ M        Q TLT+VL
Sbjct: 93  GRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVL 152

Query: 281 RACTGLALLELGTQVHVHVLKYDHD--LILNNALLDMYCKCGSLEDAMSVFSR------- 331
            +C  +  L +G +VH  V+K+     + + N+LL+MY K G    A  VF R       
Sbjct: 153 ASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTS 212

Query: 332 ------------------------MIQKDVISWSTMISGLAQNGYSQEALKLFESMKV-S 366
                                   MI++DV+SW+ MISG  Q+G+ +EAL +F  M + S
Sbjct: 213 SWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDS 272

Query: 367 RIKPNYITIVGVLFACS-----------HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
             KP+  T+   L AC+           HA  +   ++ F ++             + +I
Sbjct: 273 SSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVG------------NALI 320

Query: 416 DLLGRAGKLQEAVKLIHE-MPYEPDAVTWRALL 447
            +  ++G ++ A K+I + M    D + + ALL
Sbjct: 321 SMYSKSGGVEIAQKIIEQSMISNLDVIAFTALL 353


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/624 (38%), Positives = 346/624 (55%), Gaps = 40/624 (6%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           LP    A  +   HG        + L  C  AR A E    +H  V+  G + +  +   
Sbjct: 6   LPSVAPASDSGGHHGALTADRAASLLAACSTARRASE----LHAAVVRKGLDSDRAVAFR 61

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           L   +     L+ +  L  +  +   + +T+ I A+    ++   L LL  ML EG+ P 
Sbjct: 62  LQRAYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPT 121

Query: 175 MFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIY----------------- 217
             T SA L AC  L + R LH    K+    D +V +AL+ +Y                 
Sbjct: 122 AHTLSASLPACRGLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMP 181

Query: 218 --------------AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
                         A +G L +A  +F+ +P +D + WN++I G+ Q+   +EAL L++R
Sbjct: 182 DPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRR 241

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKC 319
           M R+    D+ T+  VL A   L  +E G  +H +V K    + LN     AL+DMYCKC
Sbjct: 242 MLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYV-KNSRCVQLNVRVATALVDMYCKC 300

Query: 320 GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL 379
           GSLEDA++VF  +  KD++ W+ MI+G A +G S++AL++F  ++   + P  IT +G+L
Sbjct: 301 GSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLL 360

Query: 380 FACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD 439
            ACSH+G VE+G + F+SM+  YGIDP  EHY CM+DLLGRAG ++EA  L+  +   PD
Sbjct: 361 NACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPD 420

Query: 440 AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKT 499
           AV W +LL AC++H+N  L    A  ++     + G YILLSNIYA   KW+EVA VR  
Sbjct: 421 AVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSM 480

Query: 500 MRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYV 559
           M+A GI KEPGCS IE++++++ F   D SHP  D+I   L  +   +   G+ P T  V
Sbjct: 481 MKASGIQKEPGCSAIEIDRKVYEFVAGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELV 540

Query: 560 LQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQ 619
           L DL+   KE ++  HSEKLA+ FGL+S   G TI+I KNLR C DCH   KL +K+ ++
Sbjct: 541 LHDLDEATKEKALAVHSEKLAVAFGLISSRPGSTIKIVKNLRACSDCHAVLKLISKITSR 600

Query: 620 TIVIRDPIRYHHFQDGNCSCGDYW 643
            IV RD  R+HHF DG+C+CGDYW
Sbjct: 601 KIVFRDRNRFHHFVDGSCTCGDYW 624


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/576 (36%), Positives = 340/576 (59%), Gaps = 2/576 (0%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
            R D+ T  +++        +     +H+     G     +++   ++++ K   ++   
Sbjct: 217 TRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGS 276

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            LF +  + ++V++  MI  Y      + +L L   ++  G R    T  +++     L+
Sbjct: 277 ALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLM 336

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           ++  +H   +K  F S   V +AL  +Y+KL E+ +A  +F+E P + L  WN++I G+ 
Sbjct: 337 LIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYT 396

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLI 307
           QN   ++A++L++ M+++ F+ +  T+T +L AC  L  L LG  VH  V    ++  + 
Sbjct: 397 QNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIY 456

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           ++ AL+ MY KCGS+ +A  +F  M +K+ ++W+TMISG   +G  QEAL +F  M  S 
Sbjct: 457 VSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSG 516

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           I P  +T + VL+ACSHAG V++G   F SM   YG +P  +HY+CM+D+LGRAG LQ A
Sbjct: 517 ITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRA 576

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487
           ++ I  M  EP +  W  LLGAC++H++T+LA   ++K+  LDP + G ++LLSNI++  
Sbjct: 577 LQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSAD 636

Query: 488 QKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL 547
           + + + A VR+T + R + K PG + IE+ +  H F   D SHPQ+ +I + L+ L  K+
Sbjct: 637 RNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKM 696

Query: 548 VGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCH 607
              GY P+T   L D+E E++E  ++ HSE+LAI FGL++   G  IRI KNLR+C DCH
Sbjct: 697 REAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCH 756

Query: 608 TFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           T  KL +K+  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 757 TVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/433 (27%), Positives = 210/433 (48%), Gaps = 14/433 (3%)

Query: 63  HAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF 122
           H  +   ++ +S TYA  I            +++H   +  G + E  L + ++ M+ KF
Sbjct: 108 HLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKF 167

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAV 181
             +E+A+ +FD+MPE++ + W TMIS Y   +M  +++++   ++ E   R +  T   +
Sbjct: 168 WRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDI 227

Query: 182 LRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
           L A   L  LR   Q+H    K G  S  +V +  I +Y+K G+++    +F E    D+
Sbjct: 228 LPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDI 287

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           V +N++I G+  N + + +L+L+K +  +G     STL S++     L L+     +H +
Sbjct: 288 VAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLI---YAIHGY 344

Query: 299 VLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
            LK +      ++ AL  +Y K   +E A  +F    +K + SW+ MISG  QNG +++A
Sbjct: 345 CLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDA 404

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMI 415
           + LF  M+ S   PN +TI  +L AC+  G +  G W H   + +    +      + +I
Sbjct: 405 ISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVH--DLVRSTDFESSIYVSTALI 462

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
            +  + G + EA +L   M  + + VTW  ++    +H     A+    ++LN     P 
Sbjct: 463 GMYAKCGSIAEARRLFDLMT-KKNEVTWNTMISGYGLHGQGQEALNIFYEMLN-SGITPT 520

Query: 476 TYILLSNIYANSQ 488
               L  +YA S 
Sbjct: 521 PVTFLCVLYACSH 533



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 139/295 (47%), Gaps = 6/295 (2%)

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           TY    +   S+  L Q H  II  GF +D+ + + L    + LG +  A  +F  +   
Sbjct: 22  TYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRP 81

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRA-GFAADQSTLTSVLRACTGLALLELGTQV 295
           D+ ++N ++ GF+ N     +L+++  ++++     + ST    + A +G      G  +
Sbjct: 82  DVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVI 141

Query: 296 HVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H   +    D +L+L + ++ MY K   +EDA  VF RM +KD I W+TMISG  +N   
Sbjct: 142 HGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMY 201

Query: 354 QEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            E++++F  +   S  + +  T++ +L A +    +  G     S+    G        +
Sbjct: 202 VESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGM-QIHSLATKTGCYSHDYVLT 260

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
             I L  + GK++    L  E   +PD V + A++     +  T+L++   K+++
Sbjct: 261 GFISLYSKCGKIKMGSALFREF-RKPDIVAYNAMIHGYTSNGETELSLSLFKELM 314



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 97/212 (45%), Gaps = 5/212 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     MQ      + VT   ++  C    A+   K VH+ V S  FE   ++   L+ 
Sbjct: 404 AISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIG 463

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   + EA+ LFD M ++N V+W TMIS Y       +AL +   ML  G+ P   T
Sbjct: 464 MYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVT 523

Query: 178 YSAVLRACDSLIILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           +  VL AC    ++++     +  I + GFE  V   + ++DI  + G L+ A      M
Sbjct: 524 FLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAM 583

Query: 234 PTR-DLVVWNSIIGGFAQNSDVDEALNLYKRM 264
                  VW +++G    + D + A  + +++
Sbjct: 584 SIEPGSSVWETLLGACRIHKDTNLARTVSEKL 615


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/580 (39%), Positives = 342/580 (58%), Gaps = 6/580 (1%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G R DS+T   ++  C    A+   +  H   +  G E    +   +L+ + K   +  A
Sbjct: 156 GERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAA 215

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           +V+FD MP +N VSW  MI  Y     + +AL L   M+ EGV     +  A L+AC  L
Sbjct: 216 RVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGEL 275

Query: 189 IILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             L +   +H  ++++G +S+V V +ALI +Y+K   +  A  VF+E+  R  V WN++I
Sbjct: 276 GCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMI 335

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--D 303
            G AQN   ++A+ L+ RM+      D  TL SV+ A   ++       +H + ++   D
Sbjct: 336 LGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLD 395

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D+ +  AL+DMY KCG +  A  +F+   ++ VI+W+ MI G   +G+ + A++LFE M
Sbjct: 396 QDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEM 455

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
           K   I PN  T + VL ACSHAG V++G  +F SMK+ YG++PG EHY  M+DLLGRAGK
Sbjct: 456 KSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGK 515

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L EA   I +MP +P    + A+LGACK+H+N +LA  +A+KI  L PQ+   ++LL+NI
Sbjct: 516 LDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANI 575

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           YAN+  W +VA VR  M   G+ K PG S I++  +IH F    ++H Q  +I   L  L
Sbjct: 576 YANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKL 635

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
           I+++  VGY PDT+ +  D+E + K   +  HSEKLAI FGL+    G TI+I+KNLR+C
Sbjct: 636 IEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVC 694

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            DCH   KL + +  + I++RD  R+HHF+DG CSCGDYW
Sbjct: 695 NDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/407 (31%), Positives = 218/407 (53%), Gaps = 10/407 (2%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           DLP A+ A  AM   G      T+  L+K C AR  +   + VH  + + G + E     
Sbjct: 39  DLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAAT 98

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML-REGVR 172
            L NM+ K     +A+ +FD+MP R+ V+W  +++ Y    +   A+E+++ M   EG R
Sbjct: 99  ALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGER 158

Query: 173 PNMFTYSAVL---RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P+  T  +VL       +L   R+ H   I+ G E  V V +A++D Y K G++R A  V
Sbjct: 159 PDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVV 218

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F+ MPT++ V WN++I G+AQN D  EAL L+ RM   G      ++ + L+AC  L  L
Sbjct: 219 FDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCL 278

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
           + G +VH  +++   D ++ + NAL+ MY KC  ++ A  VF  + ++  +SW+ MI G 
Sbjct: 279 DEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGC 338

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH-AGFVEDGWNHFKSMKKFYGIDP 406
           AQNG S++A++LF  M++  +KP+  T+V V+ A +  +  ++  W H  S++    +D 
Sbjct: 339 AQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIR--LHLDQ 396

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
                + +ID+  + G++  A +++     E   +TW A++     H
Sbjct: 397 DVYVLTALIDMYAKCGRVNIA-RILFNSARERHVITWNAMIHGYGSH 442



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 164/349 (46%), Gaps = 17/349 (4%)

Query: 36  TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL 95
           T+NS S       +    D   A+   + M   GV    V+    ++ C     ++E   
Sbjct: 224 TKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMR 283

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           VH  ++  G +    ++N L+ M+ K   ++ A  +FD++  R  VSW  MI        
Sbjct: 284 VHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGC 343

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSA 212
           ++ A+ L   M  E V+P+ FT  +V+ A   +   +  R +H   I++  + DV+V +A
Sbjct: 344 SEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTA 403

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           LID+YAK G +  A  +FN    R ++ WN++I G+  +     A+ L++ MK  G   +
Sbjct: 404 LIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPN 463

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSV 328
           ++T  SVL AC+   L++ G + +   +K D+ L         ++D+  + G L++A + 
Sbjct: 464 ETTFLSVLSACSHAGLVDEGRE-YFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAF 522

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
             +M          M  GL+  G    A KL ++++++      I  +G
Sbjct: 523 IQKM---------PMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELG 562


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/643 (36%), Positives = 360/643 (55%), Gaps = 53/643 (8%)

Query: 54  DLPRAMKAMHAM-QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
           D  RAMK    M +  G+R D+V+   ++  C +  A    K VH + L  G   + F+ 
Sbjct: 229 DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVG 288

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL--------- 163
           N +++M+ K  ++EEA  +F++M  ++VVSW  M++ Y      D AL L          
Sbjct: 289 NAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIE 348

Query: 164 ------------------------IF--MLREGVRPNMFTYSAVLRACDS---LIILRQL 194
                                   +F  ML  G  PN+ T  ++L  C S   L+  ++ 
Sbjct: 349 LNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKET 408

Query: 195 HCGIIKVGFE-------SDVFVRSALIDIYAKLGELRNAECVFNEMPTRD--LVVWNSII 245
           HC  IK            D+ V +ALID+Y+K    + A  +F+ +P +D  +V W  +I
Sbjct: 409 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI 468

Query: 246 GGFAQNSDVDEALNLYKRMKRAG--FAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD 303
           GG AQ+ + +EAL L+ +M +       +  T++  L AC  L  L  G Q+H +VL+  
Sbjct: 469 GGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNR 528

Query: 304 HD---LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
            +   L + N L+DMY K G ++ A  VF  M Q++ +SW+++++G   +G  +EAL++F
Sbjct: 529 FESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIF 588

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420
             M+   + P+ +T V VL+ACSH+G V+ G N+F  M K +G+ PG EHY+CM+DLL R
Sbjct: 589 YEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSR 648

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480
           AG+L EA++LI  MP +P    W ALL AC+V+ N +L   AA ++L L+  + G+Y LL
Sbjct: 649 AGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLL 708

Query: 481 SNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHL 540
           SNIYAN++ W +VA +R  M+  GI K PGCSW++  K    F   D SHP   +I   L
Sbjct: 709 SNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLL 768

Query: 541 KHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNL 600
           + L+Q++  +GY PD  + L D++ E+K D +  HSEKLA+ +G+++   G  IRI KNL
Sbjct: 769 RDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNL 828

Query: 601 RICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           R CGDCH+     + +    I++RD  R+HHF++G+CSC  YW
Sbjct: 829 RACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 123/409 (30%), Positives = 194/409 (47%), Gaps = 51/409 (12%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM--PERNVVSWTTM 146
           ++  A+L H  +L  G   +      +++M++ F+   +A  +  ++      V  W  +
Sbjct: 60  SLASAELTHQQLLVQGLPHDP---THIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQL 116

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGF 203
           I         +  L+L   M R G RP+ +T+  VL+AC  +   R    +H  +   GF
Sbjct: 117 IRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGF 176

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTR---DLVVWNSIIGGFAQNSDVDEALNL 260
           E +VFV + L+ +Y + G   NA  VF+EM  R   DLV WNSI+  + Q  D   A+ +
Sbjct: 177 EWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKM 236

Query: 261 YKRMKR-AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYC 317
           ++RM    G   D  +L +VL AC  +     G QVH + L+     D+ + NA++DMY 
Sbjct: 237 FERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYA 296

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           KCG +E+A  VF RM  KDV+SW+ M++G +Q G   +AL LFE ++  +I+ N +T   
Sbjct: 297 KCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSA 356

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           V+     AG+ + G         F  +D  R+   C                       E
Sbjct: 357 VI-----AGYAQRGLG-------FEALDVFRQMLLC---------------------GSE 383

Query: 438 PDAVTWRALLGAC----KVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
           P+ VT  +LL  C     +    +    A K ILNLD  DPG  +++ N
Sbjct: 384 PNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVIN 432


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 247/668 (36%), Positives = 371/668 (55%), Gaps = 44/668 (6%)

Query: 14  PSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHA-MQCHGVRA 72
           PS  A  ++L++   +   N  TR S+ LL  F+R       P    +++  ++ +G   
Sbjct: 60  PSPSALDYALSLFSHIP--NPPTRFSNQLLRQFSR----GPTPENTLSLYLHLRRNGFPL 113

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF-EPETFLVNILLNMHVKFSLLEEAQVL 131
           D  ++  L+K      A+     +H      GF   + F+ + L+ M+     + +A+ L
Sbjct: 114 DRFSFPPLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFL 173

Query: 132 FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSL 188
           FD+M  R+VV+W  MI  Y      D  L+L   M   G  P+      VL AC    +L
Sbjct: 174 FDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNL 233

Query: 189 IILRQLHCGIIKVGFESDVFVRSALIDIYA------------------------------ 218
              + +H  I   GF     ++++L+++YA                              
Sbjct: 234 SYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGY 293

Query: 219 -KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT 277
            KLG +++A  +F+ M  +DLV W+++I G+A++    EAL L+  M+R     DQ T+ 
Sbjct: 294 AKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITML 353

Query: 278 SVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK 335
           SV+ AC  +  L     +H +  K  +   L +NNAL+DMY KCG+L  A  VF  M +K
Sbjct: 354 SVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRK 413

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
           +VISWS+MI+  A +G +  A+ LF  MK   I+PN +T +GVL+ACSHAG VE+G   F
Sbjct: 414 NVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFF 473

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN 455
            SM   + I P REHY CM+DL  RA  L++A++LI  MP+ P+ + W +L+ AC+ H  
Sbjct: 474 SSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGE 533

Query: 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE 515
            +L   AA ++L L+P   G  ++LSNIYA  ++WD+V  VRK M+ +G++KE  CS IE
Sbjct: 534 IELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIE 593

Query: 516 VNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYH 575
           VN ++H F +AD  H Q D+I K L  ++ +L  VGY P T+ +L DLE E+K++ + +H
Sbjct: 594 VNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWH 653

Query: 576 SEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDG 635
           SEKLA+ +GL+   +   IRI KNLRIC DCH+F KL +K+    IV+RD  R+HHF  G
Sbjct: 654 SEKLALCYGLIGERKESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGG 713

Query: 636 NCSCGDYW 643
            CSC DYW
Sbjct: 714 ICSCRDYW 721



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 142/284 (50%), Gaps = 15/284 (5%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKL-----GELRNAECVFNEMP 234
            +L +C +L  ++Q+H  I++   ++   +   L+     L       L  A  +F+ +P
Sbjct: 17  GLLASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIP 76

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
                  N ++  F++    +  L+LY  ++R GF  D+ +   +L+A + L+ L LG +
Sbjct: 77  NPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLE 136

Query: 295 VHVHVLKYDH---DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           +H    K+     D  + +AL+ MY  CG + DA  +F +M  +DV++W+ MI G +QN 
Sbjct: 137 IHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNA 196

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY---GIDPGR 408
           +    LKL+E MK S  +P+ I +  VL AC+HAG +  G    K++ +F    G   G 
Sbjct: 197 HYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYG----KAIHQFIKDNGFRVGS 252

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
              + ++++    G +  A ++  ++P +   V+   L G  K+
Sbjct: 253 HIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKL 296


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/601 (39%), Positives = 350/601 (58%), Gaps = 12/601 (1%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111
           +R LP A+     M+   V+ +  T+  + K           K +H   L GG   + F+
Sbjct: 87  RRFLP-ALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFV 145

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS-AYCDAKMNDKALELLIFMLREG 170
                +M+ K     +A  +FD+MP+RN+ +W   IS A  D +  D  +    F+   G
Sbjct: 146 GCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHG 205

Query: 171 VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
             PN  T+ A L AC  ++ L   RQLH  I++ G++ DV V + LID Y K G++ +AE
Sbjct: 206 -EPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAE 264

Query: 228 CVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
            VFN +  R ++V W S++    QN + + A  ++ + ++     D   ++SVL AC  L
Sbjct: 265 MVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARKEVEPTD-FMISSVLSACAEL 323

Query: 287 ALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
             LELG  VH   +K   + ++ + +AL+DMY KCGS+E+A  VFS + ++++++W+ MI
Sbjct: 324 GGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMI 383

Query: 345 SGLAQNGYSQEALKLFESMKVSR--IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
            G A  G    AL+LFE M +    I+P+Y+T++ +L  CS  G VE G   F+SM+  Y
Sbjct: 384 GGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNY 443

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           GI+PG EH++C++DLLGR+G +  A + I  M  +P    W ALLGAC++H  T+L   A
Sbjct: 444 GIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIA 503

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A+K+  LD  D G +++LSN+ A++ +W+E   VRK M+  GI K  G SWI V  +IH 
Sbjct: 504 AEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHV 563

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F   DSSH +  +I   L  L   +   GY PDTN  L DLE E+K   + YHSEK+A+ 
Sbjct: 564 FQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIALA 623

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           FGL++L QG  IRI KNLRICGDCH+  K  +++  + I++RD  R+H F+DG CSC DY
Sbjct: 624 FGLIALPQGVPIRITKNLRICGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCKDY 683

Query: 643 W 643
           W
Sbjct: 684 W 684



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/397 (30%), Positives = 199/397 (50%), Gaps = 24/397 (6%)

Query: 78  AELIKCCLARHAVEEAKLVHNHVLSGGFEP-ETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
             L++  ++ H     + +H H++     P  +FL N L+NM+ K  LL  AQ +     
Sbjct: 10  GSLLESAVSTHCSILGRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTH 69

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQ 193
            R VV+WT++IS     +    AL     M R+ V+PN FT+  V +A   + I    +Q
Sbjct: 70  LRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQ 129

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H   +K G   DVFV  +  D+Y K G   +A  +F+EMP R+L  WN+ I    Q+  
Sbjct: 130 IHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRR 189

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNA 311
             +A+  +K         +  T  + L AC  +  L LG Q+H  +++  Y  D+ + N 
Sbjct: 190 SLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANG 249

Query: 312 LLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           L+D Y KCG +  A  VF+R+  +K+V+SW +M++ L QN   + A  +F   +   ++P
Sbjct: 250 LIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQAR-KEVEP 308

Query: 371 NYITIVGVLFACSHAGFVEDGWN-HFKSMKK------FYGIDPGREHYSCMIDLLGRAGK 423
               I  VL AC+  G +E G + H  ++K       F G        S ++D+ G+ G 
Sbjct: 309 TDFMISSVLSACAELGGLELGRSVHALAVKACVEDNIFVG--------SALVDMYGKCGS 360

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           ++ A ++  E+P E + VTW A++G      + D+A+
Sbjct: 361 IENAEQVFSELP-ERNLVTWNAMIGGYAHQGDIDMAL 396



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 11/201 (5%)

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI---LNNALLDMYCKCGSLEDAMSVF 329
           Q+ L S+L +        LG  +H H+++     +   L+N L++MY K   L  A  V 
Sbjct: 6   QNLLGSLLESAVSTHCSILGRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVL 65

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
           S    + V++W+++ISG   N     AL  F +M+   ++PN  T   V  A +      
Sbjct: 66  SLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPM 125

Query: 390 DGWN-HFKSMKK--FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            G   H  ++K    Y +  G    SC  D+  + G   +A  +  EMP + +  TW A 
Sbjct: 126 TGKQIHGLALKGGMIYDVFVG---CSCF-DMYCKTGFRGDACNMFDEMP-QRNLATWNAY 180

Query: 447 LGACKVHRNTDLAICAAKKIL 467
           +      R +  AI A K+ L
Sbjct: 181 ISNAVQDRRSLDAIVAFKEFL 201


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/618 (37%), Positives = 353/618 (57%), Gaps = 40/618 (6%)

Query: 65   MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
            M+  GV  +  T+A +   C           V  H++  GFE    + N L++M   FS 
Sbjct: 467  MRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSS 526

Query: 125  LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            +EEA  +FD M E +++SW  MISAY    +  ++L    +M       N  T S++L  
Sbjct: 527  VEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSV 586

Query: 185  C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL--- 238
            C   D+L   R +H  ++K+G +S+V + + L+ +Y++ G   +AE VF  M  RDL   
Sbjct: 587  CSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISW 646

Query: 239  -------------------------------VVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
                                           V WN++IGG A+N + +EA+  YK ++  
Sbjct: 647  NSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHAENEEPNEAVKAYKLIREK 706

Query: 268  GFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDA 325
            G  A+  T+ S L A   LA+LE G Q+H  V+K  ++ DL + NA +DMY KCG + D 
Sbjct: 707  GIPANYITMVS-LAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDV 765

Query: 326  MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
            + +  + I +  +SW+ +IS  A++G  Q+A + F  M     KP+++T V +L AC+H 
Sbjct: 766  LKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHG 825

Query: 386  GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
            G V++G  ++ SM + +G+ PG EH  C+IDLLGR+G+L  A   I EMP  P+ + WR+
Sbjct: 826  GLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRS 885

Query: 446  LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
            LL AC++H N +LA   A+ +L LDP D   Y+L SN+ A S KW++V  +RK M +  I
Sbjct: 886  LLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNI 945

Query: 506  TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
             K+P CSW+++  ++H+F + +  HPQ  +I+  L  L++     GY PDT++ L D++ 
Sbjct: 946  KKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDE 1005

Query: 566  EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
            EQKE ++  HSE+LA+ FGL++  +  T+RI KNLR+CGDCH+  K  + +  + IV+RD
Sbjct: 1006 EQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRD 1065

Query: 626  PIRYHHFQDGNCSCGDYW 643
            P R+HHF  G CSCGDYW
Sbjct: 1066 PYRFHHFSGGKCSCGDYW 1083



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 210/391 (53%), Gaps = 10/391 (2%)

Query: 122 FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
           +  +  A+ +FD+M  RN  SW+TM+S Y    + ++A+ L   M   GV PN F  +++
Sbjct: 321 YGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASL 380

Query: 182 LRACDSLIILR----QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           + AC     +     Q+H  ++K G   DV+V +AL+  Y  +G + NA+ +F EMP  +
Sbjct: 381 ITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHN 440

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           +V W S++ G++ + +  E LN+Y+RM++ G + +Q+T  +V  +C  L    LG QV  
Sbjct: 441 VVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLG 500

Query: 298 HVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           H+++Y  +  + + N+L+ M+    S+E+A  VF  M + D+ISW+ MIS  A +G  +E
Sbjct: 501 HIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRE 560

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           +L+ F  M+    + N  T+  +L  CS    ++ G      + K  G+D      + ++
Sbjct: 561 SLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKL-GLDSNVCICNTLL 619

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL-AICAAKKILNLDPQDP 474
            L   AG+ ++A +L+ +   E D ++W +++ AC V     L  +    ++L +   D 
Sbjct: 620 TLYSEAGRSEDA-ELVFQAMTERDLISWNSMM-ACYVQDGKCLDGLKILAELLQMGKPDR 677

Query: 475 GTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
            T+  L   +A +++ +E  +  K +R +GI
Sbjct: 678 VTWNALIGGHAENEEPNEAVKAYKLIREKGI 708



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 126/484 (26%), Positives = 205/484 (42%), Gaps = 119/484 (24%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105
           F++     +L R  +A+  +  +  R D   Y ++++ C+ + A ++  L+H H+++ GF
Sbjct: 2   FSKIQSACNLGRLAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGF 61

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
             +  L   L+  +VK   +  A+ +FD MPER+VVSWT M+S Y      +KA     F
Sbjct: 62  GSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKA-----F 116

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           +L   +R                      HCG         V    AL+D ++K G++ +
Sbjct: 117 VLFSDMR----------------------HCG---------VKANHALVDFHSKCGKMED 145

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F  M  RD+V WN++IGG+A     D++  +++ M R G   D  TL SVLRA   
Sbjct: 146 ASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAE 205

Query: 286 LALLELGTQVH-----------------------------------------------VH 298
              L +  Q+H                                                 
Sbjct: 206 GGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTAL 265

Query: 299 VLKYDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS--- 353
           +  Y H+ I  + NAL+DMY K G +EDA   F  M +K+VISW+++ISG A++GY    
Sbjct: 266 ITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMA 325

Query: 354 ------------------------------QEALKLFESMKVSRIKPNYITIVGVLFACS 383
                                         +EA+ LF  M    ++PN   +  ++ ACS
Sbjct: 326 HARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACS 385

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
            +G++ D            GI       + ++   G  G +  A KL  EMP + + V+W
Sbjct: 386 RSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMP-DHNVVSW 444

Query: 444 RALL 447
            +L+
Sbjct: 445 TSLM 448



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 217/453 (47%), Gaps = 44/453 (9%)

Query: 69  GVRADSVTYAELIKCC-LARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           GV  +    A LI  C  + +  +E   VH  V+  G   + ++   L++ +    L+  
Sbjct: 369 GVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYN 428

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           AQ LF++MP+ NVVSWT+++  Y D+    + L +   M +EGV  N  T++ V  +C  
Sbjct: 429 AQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGL 488

Query: 188 L---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L   ++  Q+   II+ GFE  V V ++LI +++    +  A  VF+ M   D++ WN++
Sbjct: 489 LEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAM 548

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           I  +A +    E+L  +  M+      + +TL+S+L  C+ +  L+ G  +H  V+K   
Sbjct: 549 ISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGL 608

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM------------------- 343
           D ++ + N LL +Y + G  EDA  VF  M ++D+ISW++M                   
Sbjct: 609 DSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAE 668

Query: 344 ---------------ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
                          I G A+N    EA+K ++ ++   I  NYIT+V  L A ++   +
Sbjct: 669 LLQMGKPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVS-LAATANLAVL 727

Query: 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
           E+G      + K  G +      +  +D+ G+ G++ + +K++ + P     ++W  L+ 
Sbjct: 728 EEGQQLHGLVIKL-GFESDLHVTNAAMDMYGKCGEMHDVLKMLPQ-PINRSRLSWNILIS 785

Query: 449 ACKVHRNTDLAICAAKKILNLDPQ-DPGTYILL 480
           A   H     A     ++L L P+ D  T++ L
Sbjct: 786 AFARHGCFQKARETFHEMLKLGPKPDHVTFVSL 818


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/659 (36%), Positives = 378/659 (57%), Gaps = 54/659 (8%)

Query: 2   ILKAVSKLKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKA 61
           ++  +S  + T P + A   S+   P V S        +SLL  + R     D  R  + 
Sbjct: 85  LISGLSLRRQTLPDAAAALASIPFPPSVVSF-------TSLLRGYVRHGLLADAIRLFQQ 137

Query: 62  MHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV--NILLNMH 119
           M          + V+Y  L+   L    V EA+ + + +      P+  +V    +L+ +
Sbjct: 138 MP-------ERNHVSYTVLLGGLLDAGRVNEARRLFDEM------PDRDVVAWTAMLSGY 184

Query: 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
            +   + EA+ LFD+MP+RNVVSWT MIS Y      + A +L   M       N  +++
Sbjct: 185 CQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWT 240

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESD------------VFVRSALIDIYAKLGELRNAE 227
           A+L              G I+ G   D            V   +A++  + + G +  A+
Sbjct: 241 AML-------------VGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAK 287

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            VF +M  RD   W+++I  + QN  + EAL+ ++ M   G   +  ++ S+L  C  LA
Sbjct: 288 TVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALA 347

Query: 288 LLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
           +L+ G +VH  +L+  +D D+   +AL+ MY KCG+L+ A  VF     KD++ W++MI+
Sbjct: 348 VLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMIT 407

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           G AQ+G  ++AL +F  M+++ + P+ IT +G L ACS+ G V++G   F SM     I 
Sbjct: 408 GYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIR 467

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
           PG EHYSCM+DLLGR+G ++EA  LI  MP EPDAV W AL+GAC++HRN ++A  AAKK
Sbjct: 468 PGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKK 527

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
           +L L+P + G Y+LLS+IY +  +W++ +++RK + +R + K PGCSWIE +K++H F  
Sbjct: 528 LLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTS 587

Query: 526 ADS-SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFG 584
            D  +HP+   I + L+ L   L+  GY+ D ++VL D++ EQK  S++YHSE+ A+ +G
Sbjct: 588 GDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYG 647

Query: 585 LMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L+ + +G  IR+ KNLR+CGDCH+  KL AK+ ++ I++RD  R+HHF+DG CSC DYW
Sbjct: 648 LLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 136/332 (40%), Gaps = 72/332 (21%)

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR---- 266
           +A I   A+ G +  A   F  MP R    +N+++ G+ +N   D AL L++RM      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 267 ------AGFAADQSTL-------------------TSVLRACTGLALLELGTQVHVHVLK 301
                 +G +  + TL                   TS+LR      LL    ++   + +
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 302 YDH-----------------------------DLILNNALLDMYCKCGSLEDAMSVFSRM 332
            +H                             D++   A+L  YC+ G + +A ++F  M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
            +++V+SW+ MISG AQNG    A KLFE M     + N ++   +L     AG VED  
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMP----ERNEVSWTAMLVGYIQAGHVEDAA 256

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGK-LQEAVKLIHEMPYEPDAVTWRALLGACK 451
             F +M       P     +C   ++G   + + +A K + E   E D  TW A++ A +
Sbjct: 257 ELFNAM-------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYE 309

Query: 452 VHRNTDLAICAAKKIL--NLDPQDPGTYILLS 481
            +     A+   +++L   + P  P    +L+
Sbjct: 310 QNEFLMEALSTFREMLWRGVRPNYPSVISILT 341


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/583 (38%), Positives = 347/583 (59%), Gaps = 35/583 (6%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  ++  G   + F+V  LL    K   ++ A  +F      NV  +T +I  +  +  
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSA 212
              A++L   ML + + P+ +  +++L+AC S + LR+   +H   +K+G  S+  VR  
Sbjct: 128 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLR 187

Query: 213 LIDIYAKLGELRNAECVFNEMPT------------------------------RDLVVWN 242
           ++++Y K GEL +A  VF EMP                               +D V W 
Sbjct: 188 IMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWT 247

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY 302
           ++I GF +N +++ AL  ++ M+      ++ T+  VL AC+ L  LE+G  VH ++ K+
Sbjct: 248 AMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKF 307

Query: 303 D--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
           +   +L + NAL++MY +CGS+++A +VF  M  +DVI+++TMISGL+ NG S++A++LF
Sbjct: 308 EIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELF 367

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420
             M   R++P  +T VGVL ACSH G V+ G+  F SM + YG++P  EHY CM+DLLGR
Sbjct: 368 RVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGR 427

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480
            G+L+EA  LI  M   PD +    LL ACK+H+N +L    AK + +    D GTY+LL
Sbjct: 428 VGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLL 487

Query: 481 SNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHL 540
           S++YA+S KW E A+VR  M+  G+ KEPGCS IEVN +IH F + D  HP+ ++I + L
Sbjct: 488 SHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKL 547

Query: 541 KHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNL 600
           + L + L   GY P+   VLQD+E  +KE ++  HSE+LAI +GL+S      IR+ KNL
Sbjct: 548 EELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNL 607

Query: 601 RICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           R+C DCH+  KL AK+  + +V+RD  R+H+F++G CSCGDYW
Sbjct: 608 RVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 174/395 (44%), Gaps = 66/395 (16%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D+   A ++K C ++ A+ E + VH+  L  G      +   ++ ++ K   L +A+ +F
Sbjct: 146 DNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVF 205

Query: 133 DQMPE------------------------------RNVVSWTTMISAYCDAKMNDKALEL 162
           ++MPE                              ++ V WT MI  +   +  ++ALE 
Sbjct: 206 EEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEA 265

Query: 163 LIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAK 219
              M  E VRPN FT   VL AC  L  L   R +H  + K   E ++FV +ALI++Y++
Sbjct: 266 FRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSR 325

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
            G +  A+ VF+EM  RD++ +N++I G + N    +A+ L++ M          T   V
Sbjct: 326 CGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGV 385

Query: 280 LRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
           L AC+   L++ G ++  H +  D+                            ++  +  
Sbjct: 386 LNACSHGGLVDFGFKI-FHSMTRDYG---------------------------VEPQIEH 417

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           +  M+  L + G  +EA  L  +MK++   P++I +  +L AC     +E G    K ++
Sbjct: 418 YGCMVDLLGRVGRLEEAYDLIRTMKMT---PDHIMLGTLLSACKMHKNLELGEQVAKVLE 474

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
                D G   Y  +  +   +GK +EA ++  +M
Sbjct: 475 DRGQADSGT--YVLLSHVYASSGKWKEAAQVRAKM 507



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 121/262 (46%), Gaps = 45/262 (17%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++D F R     ++ RA++A   MQ   VR +  T   ++  C    A+E  + VH++
Sbjct: 247 TAMIDGFVR---NEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSY 303

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           +     E   F+ N L+NM+ +   ++EAQ +FD+M +R+V+++ TMIS       + +A
Sbjct: 304 MRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQA 363

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
           +EL   M+   +RP   T+  VL AC         H G++  GF+               
Sbjct: 364 IELFRVMIGRRLRPTNVTFVGVLNACS--------HGGLVDFGFK--------------- 400

Query: 220 LGELRNAECVFNEMPTRDLVV------WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
                    +F+ M TRD  V      +  ++    +   ++EA +L + MK      D 
Sbjct: 401 ---------IFHSM-TRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMK---MTPDH 447

Query: 274 STLTSVLRACTGLALLELGTQV 295
             L ++L AC     LELG QV
Sbjct: 448 IMLGTLLSACKMHKNLELGEQV 469


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/541 (40%), Positives = 323/541 (59%), Gaps = 9/541 (1%)

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
           P+T   N LL+ H     ++ A+ +F  MP ++V SW TM+S       +++A  +   M
Sbjct: 75  PDTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIM 134

Query: 167 -LREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
            +R  V  N     A L     +     L     +   ++D  + +A++  Y   G ++ 
Sbjct: 135 PVRNAVSWNAMV--AALACSGDMGAAEDLFRNAPE---KTDAILWTAMVSGYMDTGNVQK 189

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLRACT 284
           A   F  MP R+LV WN+++ G+ +NS  D+AL ++K M        + STL+SVL  C+
Sbjct: 190 AMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCS 249

Query: 285 GLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            L+ L  G QVH   +K     ++ +  +LL MYCKCG L DA  VF  M  KD+++W+ 
Sbjct: 250 NLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNA 309

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           MISG AQ+G   +A+KLFE MK   + P++IT++ VL AC H G  + G   F++M++ Y
Sbjct: 310 MISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAY 369

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            I+P  +HYSCM+DLL RAG L+ AV +IH MP+EP    +  LL AC+V++N + A  A
Sbjct: 370 KIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFA 429

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A+K++  DPQ+ G Y+ L+NIYA + KW +V+ VR+ M+   + K PG SW+E+    H 
Sbjct: 430 ARKLIEQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHE 489

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F   D  HPQ+  I+  L  L   +  +GY PD ++ L D+E   K   +  HSEKLAI 
Sbjct: 490 FRSNDRLHPQLGLIHDKLDRLQMLMKAMGYVPDLDFALHDVEDSLKSQMLMRHSEKLAIA 549

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           FGL+S + G T+RI KNLRICGDCH  AKL +K+E++ I++RD  R+HHF+ G+CSCGDY
Sbjct: 550 FGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDY 609

Query: 643 W 643
           W
Sbjct: 610 W 610



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 108/263 (41%), Gaps = 43/263 (16%)

Query: 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278
           + G+L  AE  F     +    +N ++ G+A+ S                          
Sbjct: 24  RRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKAS-------------------------G 58

Query: 279 VLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
           ++R      L +  +  H   + Y       N LL  +  CG ++ A  VFS M  KDV 
Sbjct: 59  LIRLADARRLFD--SIPHPDTVSY-------NTLLSCHFACGDIDGARRVFSTMPVKDVT 109

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
           SW+TM+SGL++NG S+EA  +F  M V R   ++  +V  L      G  ED + +  + 
Sbjct: 110 SWNTMVSGLSKNGASEEAAAMFRIMPV-RNAVSWNAMVAALACSGDMGAAEDLFRN--AP 166

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
           +K   I      ++ M+      G +Q+A++    MP   + V+W A++     +   D 
Sbjct: 167 EKTDAI-----LWTAMVSGYMDTGNVQKAMEFFGAMPVR-NLVSWNAVVAGYVKNSRADD 220

Query: 459 AICAAKKILNLDPQDPGTYILLS 481
           A+   K ++      P    L S
Sbjct: 221 ALRVFKTMVEDSIVQPNASTLSS 243



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 20/177 (11%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V+ ++ T + ++  C    A+   + VH   +         +   LL+M+ K   L +A 
Sbjct: 234 VQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDAC 293

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            +FD+M  +++V+W  MIS Y       +A++L   M  EGV P+  T  AVL AC    
Sbjct: 294 KVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTAC---- 349

Query: 190 ILRQLHCGIIKVG------------FESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
               +H G+   G             E  +   S ++D+  + G L  A  + + MP
Sbjct: 350 ----IHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMP 402


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/606 (38%), Positives = 353/606 (58%), Gaps = 19/606 (3%)

Query: 51  YQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL---VHNHVLSGGFEP 107
           + R LP A+ A   M   G+R +  T+    K   A  A   + +   +H+  +  G+ P
Sbjct: 95  HGRPLP-ALSAFAGMLRLGLRPNDFTFPSAFKA--AASAPPRSTIGPQIHSLAIRFGYLP 151

Query: 108 -ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL--I 164
            + F+    L+M+ K   L+ A+ LF +MP RNVV+W  +++   +A ++ + LE +   
Sbjct: 152 VDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMT---NAVLDGRPLETIEAY 208

Query: 165 FMLRE-GVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKL 220
           F LRE G  PN+ +  A   AC   + L    Q H  ++K GFE DV V ++++D Y K 
Sbjct: 209 FGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKC 268

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
                A  VF+ M  R+ V W S++  +AQN   +EA   Y   +R+G       ++S L
Sbjct: 269 RCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSAL 328

Query: 281 RACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
             C GL  L LG  +H   ++   D ++ + +AL+DMY KCG +EDA  +F    Q++++
Sbjct: 329 TTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLV 388

Query: 339 SWSTMISGLAQNGYSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           +W+ MI G A  G +Q AL +F+ M +     PNYIT+V V+ +CS  G  +DG+  F++
Sbjct: 389 TWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFET 448

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457
           M++ +GI+P  EHY+C++DLLGRAG  ++A ++I  MP  P    W ALLGACK+H  T+
Sbjct: 449 MRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTE 508

Query: 458 LAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVN 517
           L   AA+K+  LDPQD G ++LLSN++A++ +W E  ++RK M+  GI K+PGCSW+   
Sbjct: 509 LGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWK 568

Query: 518 KQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSE 577
             +H F   D+ H   ++I   L  L +++   GY PDT Y L DLE E+KE  +  HSE
Sbjct: 569 NVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKESEVFQHSE 628

Query: 578 KLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNC 637
           KLA+ FGL+ +  G  IRI KNLRIC DCH   K  + +  + I++RD  R+HHF+   C
Sbjct: 629 KLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGREIIVRDNNRFHHFKQYQC 688

Query: 638 SCGDYW 643
           SCGDYW
Sbjct: 689 SCGDYW 694



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 188/404 (46%), Gaps = 13/404 (3%)

Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
           F+   L+N++ K  L   A       P   VVS+T  IS          AL     MLR 
Sbjct: 52  FICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRL 111

Query: 170 GVRPNMFTYSAVLRACDSL----IILRQLHCGIIKVGF-ESDVFVRSALIDIYAKLGELR 224
           G+RPN FT+ +  +A  S      I  Q+H   I+ G+   D FV  A +D+Y K G L+
Sbjct: 112 GLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLK 171

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
            A  +F EMP R++V WN+++     +    E +  Y  ++ AG   +  +  +   AC 
Sbjct: 172 LARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACA 231

Query: 285 GLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
           G   L LG Q H  V+K  ++ D+ + N+++D Y KC     A +VF  M  ++ +SW +
Sbjct: 232 GAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCS 291

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           M++  AQNG  +EA   +   + S  +P    +   L  C+    +  G     ++    
Sbjct: 292 MVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLG-RALHAVAVRS 350

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            ID      S ++D+ G+ G +++A ++ +E P + + VTW A++G      +   A+  
Sbjct: 351 CIDANIFVASALVDMYGKCGCVEDAEQIFYETP-QRNLVTWNAMIGGYAHIGDAQNALLV 409

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWD---EVAEVRKTMRAR 503
              ++      P  YI L N+  +  +     +  E+ +TMR R
Sbjct: 410 FDDMIRSGETAP-NYITLVNVITSCSRGGLTKDGYELFETMRER 452


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/555 (39%), Positives = 334/555 (60%), Gaps = 8/555 (1%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  V+  GFE    + + L+N + K +L   +  LFD  P ++  +W+++IS++    +
Sbjct: 29  LHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVISSFAQNDL 88

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGII---KVGFESDVFVRSA 212
              AL     MLR G+ P+  T     ++  +L  L           K     DVFV S+
Sbjct: 89  PLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLKTAHHHDVFVGSS 148

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF--A 270
           L+D YAK G++  A  VF+EMP +++V W+ +I G++Q    +EALNL+KR     +   
Sbjct: 149 LVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRALEQDYDIR 208

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSV 328
            +  TL+SVLR C+   L ELG QVH    K  +D    + ++L+ +Y KCG +E    V
Sbjct: 209 VNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKCGVVEGGYKV 268

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           F  +  +++  W+ M+   AQ+ ++    +LFE M+   +KPN+IT + +L+ACSHAG V
Sbjct: 269 FEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCLLYACSHAGLV 328

Query: 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
           E G + F  MK+ +GI+PG +HY+ ++DLLGRAGKL+EAV +I EMP +P    W ALL 
Sbjct: 329 EKGEHCFGLMKE-HGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQPTESVWGALLT 387

Query: 449 ACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
            C++H NT+LA   A K+  +     G  +LLSN YA + +W+E A  RK MR +GI KE
Sbjct: 388 GCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAAGRWEEAARARKMMRDQGIKKE 447

Query: 509 PGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQK 568
            G SW+E   ++H F   D SH +  +I + L+ L +++   GY  DT++VL++++G++K
Sbjct: 448 TGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEEMAKAGYVADTSFVLKEVDGDEK 507

Query: 569 EDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIR 628
             +I+YHSE+LAI FGL++      IR+ KNLR+CGDCHT  K  +K   + I++RD  R
Sbjct: 508 SQTIRYHSERLAIAFGLITFPPEWPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNR 567

Query: 629 YHHFQDGNCSCGDYW 643
           +H F+DG C+CGDYW
Sbjct: 568 FHRFEDGKCTCGDYW 582



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 168/342 (49%), Gaps = 21/342 (6%)

Query: 40  SSLLDDFTRFCYQRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHN 98
           SS++  F     Q DLP  A++    M  HG+  D  T     K   A  ++  A  +H 
Sbjct: 77  SSVISSFA----QNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALSLHA 132

Query: 99  HVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
             L      + F+ + L++ + K   +  A+ +FD+MP +NVVSW+ MI  Y    ++++
Sbjct: 133 LSLKTAHHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEE 192

Query: 159 ALELLIFMLRE--GVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSAL 213
           AL L    L +   +R N FT S+VLR C +  +    +Q+H    K  F+S  FV S+L
Sbjct: 193 ALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSL 252

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           I +Y+K G +     VF E+  R+L +WN+++   AQ++       L++ M+R G   + 
Sbjct: 253 ISLYSKCGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNF 312

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNN----ALLDMYCKCGSLEDAMSVF 329
            T   +L AC+   L+E G   H   L  +H +   +     L+D+  + G LE+A+ V 
Sbjct: 313 ITFLCLLYACSHAGLVEKGE--HCFGLMKEHGIEPGSQHYATLVDLLGRAGKLEEAVLVI 370

Query: 330 SRM-IQKDVISWSTMISGLAQNGYSQEAL----KLFESMKVS 366
             M +Q     W  +++G   +G ++ A     K+FE   VS
Sbjct: 371 KEMPMQPTESVWGALLTGCRIHGNTELASFVADKVFEMGAVS 412



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 159/340 (46%), Gaps = 26/340 (7%)

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           QLH  +IK+GFE+   V   LI+ Y+K     ++  +F+  P +    W+S+I  FAQN 
Sbjct: 28  QLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVISSFAQND 87

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNN 310
               AL  ++RM R G   D  TL +  ++   L+ L L   +H   LK  + HD+ + +
Sbjct: 88  LPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLKTAHHHDVFVGS 147

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM--KVSRI 368
           +L+D Y KCG +  A  VF  M  K+V+SWS MI G +Q G  +EAL LF+    +   I
Sbjct: 148 SLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRALEQDYDI 207

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI------DPGREHYSCMIDLLGRAG 422
           + N  T+  VL  CS +   E G       K+ +G+      D      S +I L  + G
Sbjct: 208 RVNDFTLSSVLRVCSASTLFELG-------KQVHGLCFKTSFDSSCFVASSLISLYSKCG 260

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
            ++   K+  E+    +   W A+L AC  H +T       +++  +  + P     L  
Sbjct: 261 VVEGGYKVFEEVKVR-NLGMWNAMLIACAQHAHTGRTFELFEEMERVGVK-PNFITFLCL 318

Query: 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           +YA S        V K     G+ KE G   IE   Q +A
Sbjct: 319 LYACSH----AGLVEKGEHCFGLMKEHG---IEPGSQHYA 351


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/564 (40%), Positives = 333/564 (59%), Gaps = 15/564 (2%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
            +++H   L  G + +  L N LL+M+ +    EEA+ LF ++P  N VSW TMI+    
Sbjct: 342 GRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIP-CNAVSWNTMIAGSSQ 400

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS-------LIILRQLHCGIIKVGFES 205
                +A+EL   M  EG+ P   TY  +L A  S       +   R+LH  I+  G+ S
Sbjct: 401 KGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYAS 460

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNE--MPTR-DLVVWNSIIGGFAQNSDVDEALNLYK 262
           +  + +A++ +YA  G +  A   F    M  R D+V WN+II   +Q+     AL  ++
Sbjct: 461 EPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFR 520

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCG 320
           RM   G A +Q T  +VL AC G A L  G  VH H+     + +L +  AL  MY +CG
Sbjct: 521 RMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNLFVATALASMYGRCG 580

Query: 321 SLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL 379
           SLE A  +F ++ +++DV+ ++ MI+  +QNG + EALKLF  M+    +P+  + V VL
Sbjct: 581 SLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVL 640

Query: 380 FACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD 439
            ACSH G  ++GW  F+SM++ YGI P  +HY+C +D+LGRAG L +A +LI  M  +P 
Sbjct: 641 SACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPT 700

Query: 440 AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKT 499
            + W+ LLGAC+ +R+ D    A   +  LDP D   Y++LSNI A + KWDE AEVR  
Sbjct: 701 VLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTE 760

Query: 500 MRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYV 559
           M +RG+ KE G SWIE+  ++H F   D SHP+ ++I + L+ L  ++  +GY PDT  V
Sbjct: 761 MESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLV 820

Query: 560 LQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQ 619
           L+ ++  +KE  +  HSE+LAI  G+MS +   T+R+ KNLR+C DCH   K  +K+ N+
Sbjct: 821 LRKVDEAEKERLLCQHSERLAIALGVMS-SSTDTVRVMKNLRVCEDCHNATKFISKIVNK 879

Query: 620 TIVIRDPIRYHHFQDGNCSCGDYW 643
            IV+RD  R+HHF DG+CSCGDYW
Sbjct: 880 EIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 132/434 (30%), Positives = 222/434 (51%), Gaps = 16/434 (3%)

Query: 36  TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL 95
            R+ +S     T +       RA+   H MQ  GVR D+VT+  ++K C     + + + 
Sbjct: 90  VRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRS 149

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  ++  G + ++ L N+LL+++     +  A +LF++M ER++VSW   I+A   +  
Sbjct: 150 IHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANAQSGD 208

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALID 215
              ALEL   M  EGVRP   T    L  C ++   + +H  + + G E  + V +AL  
Sbjct: 209 LGIALELFQRMQLEGVRPARITLVIALTVCATIRQAQAIHFIVRESGLEQTLVVSTALAS 268

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
            YA+LG L  A+ VF+    RD+V WN+++G +AQ+  + EA  L+ RM   G +  + T
Sbjct: 269 AYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVT 328

Query: 276 LTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
           L +   A TG + L  G  +H   L+   D D++L NALLDMY +CGS E+A  +F R I
Sbjct: 329 LVN---ASTGCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKR-I 384

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS----HAGFVE 389
             + +SW+TMI+G +Q G  + A++LF+ M++  + P   T + +L A +     A  + 
Sbjct: 385 PCNAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMA 444

Query: 390 DGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP--DAVTWRAL 446
           +G   H + +   Y  +P     + ++ +    G + EA         E   D V+W A+
Sbjct: 445 EGRKLHSRIVSCGYASEPAIG--TAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAI 502

Query: 447 LGACKVHRNTDLAI 460
           + +   H +   A+
Sbjct: 503 ISSLSQHGHGKRAL 516



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/417 (29%), Positives = 210/417 (50%), Gaps = 21/417 (5%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
           + + + +H  ++S G E E  L N LL +++K   L + + +F ++  R+  SWTT+I+A
Sbjct: 45  LSQGRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESD 206
           Y +     +A+ +   M +EGVR +  T+ AVL+AC  L  L   R +H  I++ G +  
Sbjct: 103 YTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGK 162

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
             + + L+ IY   G + +A  +F +M  RDLV WN+ I   AQ+ D+  AL L++RM+ 
Sbjct: 163 SVLANLLLHIYGSCGCVASAMLLFEKME-RDLVSWNAAIAANAQSGDLGIALELFQRMQL 221

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLED 324
            G    + TL   L  C   A +     +H  V +   +  L+++ AL   Y + G L  
Sbjct: 222 EGVRPARITLVIALTVC---ATIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQ 278

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           A  VF R  ++DV+SW+ M+   AQ+G+  EA  LF  M    I P+ +T+V     CS 
Sbjct: 279 AKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSS 338

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
             F      H  +++K  G+D      + ++D+  R G  +EA  L   +P   +AV+W 
Sbjct: 339 LRFGR--MIHGCALEK--GLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPC--NAVSWN 392

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQDP--GTYI-LLSNIYANSQKWDEVAEVRK 498
            ++           A+   ++ + L+   P   TY+ LL  + +N ++   +AE RK
Sbjct: 393 TMIAGSSQKGQMKRAVELFQR-MQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRK 448



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 23/233 (9%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           RA+     M  HGV  + +T   ++  C    A+ E ++VH+H+   G E   F+   L 
Sbjct: 514 RALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNLFVATALA 573

Query: 117 NMHVKFSLLEEAQVLFDQMP-ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
           +M+ +   LE A+ +F+++  ER+VV +  MI+AY    +  +AL+L   M +EG RP+ 
Sbjct: 574 SMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDE 633

Query: 176 FTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSAL------------IDIYAKLGEL 223
            ++ +VL AC         H G+   G+E    +R +             +D+  + G L
Sbjct: 634 QSFVSVLSACS--------HGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWL 685

Query: 224 RNAECVFNEMPTRDLV-VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
            +AE +   M  +  V VW +++G   +  DVD    L   M R     D+S 
Sbjct: 686 ADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRG-RLANSMVRELDPGDESA 737



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 11/178 (6%)

Query: 276 LTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK 335
           L  +LRA     LL  G ++H  ++    +  L N LL +Y KC SL D   VFSR+  +
Sbjct: 32  LVRLLRAAGDDRLLSQGRRIHARIVSLGLEEELGNHLLRLYLKCESLGDVEEVFSRLEVR 91

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
           D  SW+T+I+   ++G ++ A+ +F  M+   ++ + +T + VL AC+  G +  G    
Sbjct: 92  DEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQG---- 147

Query: 396 KSMKKFYGIDPGREHYSCMIDLL----GRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           +S+  +  ++ G +  S + +LL    G  G +  A+ L  +M  E D V+W A + A
Sbjct: 148 RSIHAWI-VESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM--ERDLVSWNAAIAA 202


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/576 (36%), Positives = 340/576 (59%), Gaps = 2/576 (0%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
            R D+ T  +++        +     +H+     G     +++   ++++ K   ++ A 
Sbjct: 217 TRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMAS 276

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            LF +    ++V++  MI  Y      + +L L   ++  G +    T  +++     L+
Sbjct: 277 TLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLM 336

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           ++  +H   +K  F S   V +AL  +Y+KL E+ +A  +F+E P + L  WN++I G+ 
Sbjct: 337 LIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYT 396

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLI 307
           QN   ++A++L++ M+ + F+ +  T+T +L AC  L  L LG  VH  V    ++  + 
Sbjct: 397 QNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIY 456

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           ++ AL+ MY KCGS+ +A  +F  M +K+ ++W+TMISG   +G+ QEAL +F  M  S 
Sbjct: 457 VSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSG 516

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           I P  +T + VL+ACSHAG V++G   F SM   YG +P  +HY+C++D+LGRAG LQ A
Sbjct: 517 IAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRA 576

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487
           ++ I  MP +P    W  LLGAC++H++T+LA   ++K+  LDP + G ++LLSNI++  
Sbjct: 577 LQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSAD 636

Query: 488 QKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL 547
           + + + A VR+T + R + K PG + IE+ +  H F   D SHPQ+  I++ L+ L  K+
Sbjct: 637 RNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKM 696

Query: 548 VGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCH 607
              GY P+T   L D+E E++E  ++ HSE+LAI FGL++   G  IRI KNLR+C DCH
Sbjct: 697 REAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCH 756

Query: 608 TFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           T  KL +K+  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 757 TATKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 206/413 (49%), Gaps = 13/413 (3%)

Query: 63  HAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF 122
           H  +   ++ +S TYA  I             ++H   +  G + E  L + ++ M+ KF
Sbjct: 108 HLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKF 167

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAV 181
             +E+A+ +FD+MPE++ + W TMIS Y   +M  +++++   ++ E   R +  T   +
Sbjct: 168 WRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDI 227

Query: 182 LRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
           L A   L  LR   Q+H    K G  S  +V +  I +Y+K G+++ A  +F E    D+
Sbjct: 228 LPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDI 287

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           V +N++I G+  N + + +L+L+K +  +G     STL S++     L L+     +H +
Sbjct: 288 VAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLI---YAIHGY 344

Query: 299 VLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
            LK  +     ++ AL  +Y K   +E A  +F    +K + SW+ MISG  QNG +++A
Sbjct: 345 SLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDA 404

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMI 415
           + LF  M+ S   PN +TI  +L AC+  G +  G W H   + +    +      + +I
Sbjct: 405 ISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVH--DLVRSTDFESSIYVSTALI 462

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
            +  + G + EA +L   MP + + VTW  ++    +H +   A+    ++LN
Sbjct: 463 GMYAKCGSIAEARRLFDFMP-KKNEVTWNTMISGYGLHGHGQEALTIFSEMLN 514



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 5/212 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     MQ      + VT   ++  C    A+   K VH+ V S  FE   ++   L+ 
Sbjct: 404 AISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIG 463

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   + EA+ LFD MP++N V+W TMIS Y       +AL +   ML  G+ P   T
Sbjct: 464 MYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVT 523

Query: 178 YSAVLRACDSLIILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           +  VL AC    ++++     +  I + GFE  V   + ++DI  + G L+ A      M
Sbjct: 524 FLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAM 583

Query: 234 PTR-DLVVWNSIIGGFAQNSDVDEALNLYKRM 264
           P +    VW +++G    + D + A  + +++
Sbjct: 584 PIQPGPSVWETLLGACRIHKDTNLARTVSEKL 615



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 137/291 (47%), Gaps = 6/291 (2%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           + +   S+  L Q H  I+  GF +D+ + + L    + LG +  A  +F  +   D+ +
Sbjct: 26  LFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFL 85

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRA-GFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
           +N ++ GF+ N     +L ++  ++++     + ST    + A +G      G  +H   
Sbjct: 86  FNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQA 145

Query: 300 L--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           +    D +L+L + ++ MY K   +EDA  VF RM +KD I W+TMISG  +N    E++
Sbjct: 146 IVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESI 205

Query: 358 KLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           ++F  +   S  + +  T++ +L A +    +  G     S+    G        +  I 
Sbjct: 206 QVFRDLINESCTRLDTTTLLDILPAVAELQELRLGM-QIHSLATKTGCYSHDYVLTGFIS 264

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
           L  + GK++ A  L  E    PD V + A++     +  T+L++   K+++
Sbjct: 265 LYSKCGKIKMASTLFREF-RRPDIVAYNAMIHGYTSNGETELSLSLFKELM 314


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/574 (39%), Positives = 344/574 (59%), Gaps = 10/574 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y  L++ C+   A+   K +H      G      L   L++++   + L  A+ LFD++P
Sbjct: 50  YTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIP 109

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQ 193
           ++N+  W  +I  Y     +D A+ L   ML  G+RP+ FT   VL+AC +L  +   R 
Sbjct: 110 KQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRS 169

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H  +IK G+E D+FV +ALID+YAK G + +A  VF+++  RD V+WNS++  +AQN  
Sbjct: 170 IHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGH 229

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNN--- 310
            DE+++L + M   G    ++TL +V+ +   +A L  G ++H     + H    N+   
Sbjct: 230 PDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHG--FGWRHGFQSNDKVK 287

Query: 311 -ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
            AL+DMY KCGS++ A+++F R+ +K V+SW+ +I+G A +G +  AL LF+ M+    +
Sbjct: 288 TALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMR-KEDR 346

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           P++IT VGVL ACS    +++G   +  M + YGI P  +HY+CMIDLLG  G+L EA  
Sbjct: 347 PDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYD 406

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489
           LI  M  +PD+  W ALL +CK+H N +LA  A +K++ L+P D G Y++L+N+YA S K
Sbjct: 407 LIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGK 466

Query: 490 WDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549
           W+ V ++R+ M  + I K   CSWIEV  +++AF   D SH   D I   LK L   +  
Sbjct: 467 WEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMHE 526

Query: 550 VGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
            GYAPDT  V  D+E ++K   +  HSE+LAI FGL+S + G  + I KNLRIC DCH  
Sbjct: 527 AGYAPDTGSVFHDVEEDEKTSMVCSHSERLAIAFGLISTSPGTRLLITKNLRICEDCHVA 586

Query: 610 AKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            K  +K+  + I +RD  RYH F+ G CSCGD+W
Sbjct: 587 IKFISKIMEREITVRDVNRYHSFKHGMCSCGDHW 620



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 171/328 (52%), Gaps = 16/328 (4%)

Query: 63  HAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF 122
           H M  +G+R D+ T   ++K C A  A+ E + +H +V+  G+E + F+   L++M+ K 
Sbjct: 137 HKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKC 196

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
             + +A  +FD++  R+ V W +M++AY      D+++ L   M   GVRP   T   V+
Sbjct: 197 GCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVI 256

Query: 183 RACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
            +   +  L   R++H    + GF+S+  V++ALID+YAK G ++ A  +F  +  + +V
Sbjct: 257 SSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVV 316

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
            WN+II G+A +     AL+L+ +M++     D  T   VL AC+   LL+ G  ++ ++
Sbjct: 317 SWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALY-NL 374

Query: 300 LKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQ 354
           +  D+ +         ++D+   CG L++A  +   M ++ D   W  +++    +G  +
Sbjct: 375 MVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVE 434

Query: 355 EALKLFESMKVSRIKP----NYITIVGV 378
            A    E  K+  ++P    NY+ +  +
Sbjct: 435 LAELALE--KLIELEPDDSGNYVILANM 460


>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
 gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
          Length = 721

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/596 (37%), Positives = 349/596 (58%), Gaps = 13/596 (2%)

Query: 61  AMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHV-LSGGFEPETFLVNILLNMH 119
           A+H      V   ++T+A  +  C +   ++  + +H  +  S G  P   L   + +M+
Sbjct: 126 ALHLFAKMDVPPTAMTFATALSACSSLGDLQRGREIHARIKASRGIRPSVILDTAIFSMY 185

Query: 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA-KMNDKALELLIFMLREGVRPNMFTY 178
            K   L  A+ +FD++P +NVVSW  +I+AY  +   + +AL+L   M   GVRP   T+
Sbjct: 186 AKCGDLSTAKSVFDRIPAKNVVSWNALIAAYAQSGHSHHQALDLFEKMAEHGVRPCRATF 245

Query: 179 SAVLRACDSLIILRQLHCGIIKVGFE---SDVFVRSALIDIYAKLGELRNAECVFNEMPT 235
             VL AC+ +  L ++H  I++ G +    DV V++AL+++YAK G L  A  +F +M  
Sbjct: 246 VGVLGACNDVTSLEKIHARIVETGLQFDVRDVGVQNALLNMYAKCGSLEVARDIFRKMQR 305

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
           RD V  N +I  FAQ     E++ +++ M   G   D +T  SV+ AC+    LE G ++
Sbjct: 306 RDQVSMNVMIATFAQQGLGKESIQVFREMDLEGLPQDDTTFASVITACSCCGALEFGKRI 365

Query: 296 HVHVLKYD-------HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
           H  V++          ++++  AL+ MY KCG+LE A +VF  M  K+ +SW+ M++  A
Sbjct: 366 HKRVVEPVLGRKCCLPNVVVETALVSMYGKCGTLEQAKAVFKAMTTKNSVSWNAMLAACA 425

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
             G   EA     +     ++ +  + + VL ACSH+G +E  ++HF+ M   + + P  
Sbjct: 426 HQGQGDEAAAFLRAAACEGVELDSASFISVLIACSHSGMLEVAYDHFQLMLSDFDLVPAA 485

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           E+Y CM+DLL R+G+L +A +L++ MP+ PDA+ WR LLG C+V  + + A  AA++  N
Sbjct: 486 ENYRCMVDLLARSGRLGDADELMNSMPFSPDAIAWRTLLGGCRVQGSLENAASAAEQAFN 545

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK-EPGCSWIEVNKQIHAFNVAD 527
           L+PQ+   Y LLS++Y+ + K DE+ E+R +M+ RG+ K  PG S IEV+ ++H F   D
Sbjct: 546 LEPQNTAPYTLLSSLYSATGKKDELVELRSSMKERGLRKLVPGRSVIEVHGRVHEFVAGD 605

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
           SSHPQIDKI + L  L  +L   G+ P T+ V+ DL+ E KE+ +  HSEKLA+ FGL+S
Sbjct: 606 SSHPQIDKILRELDILNVELKQAGFVPSTDGVVHDLKTEDKEEILALHSEKLAVAFGLIS 665

Query: 588 LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
              G  + + KNLR+C DCH   KL +K+ ++ I +RD  R+H FQ G CSCGDYW
Sbjct: 666 TKSGIPLLVLKNLRVCSDCHGAIKLISKLRSRVITVRDANRFHRFQSGTCSCGDYW 721



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 121/391 (30%), Positives = 206/391 (52%), Gaps = 24/391 (6%)

Query: 74  SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFD 133
           S ++A  I+ C   ++V    ++H  +   G     +L N+L+ M  K   L EA+ +FD
Sbjct: 44  SDSFAAAIRSCKDSNSVS---IIHQKITRAGLGSSAYLNNLLVLMLAKHGSLCEARSIFD 100

Query: 134 QMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL-- 191
            +  +N+ SW  +ISAY        AL L   M    V P   T++  L AC SL  L  
Sbjct: 101 AIQHKNIFSWNIIISAYAHRGHPSTALHLFAKM---DVPPTAMTFATALSACSSLGDLQR 157

Query: 192 -RQLHCGI-IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
            R++H  I    G    V + +A+  +YAK G+L  A+ VF+ +P +++V WN++I  +A
Sbjct: 158 GREIHARIKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRIPAKNVVSWNALIAAYA 217

Query: 250 QNSDV-DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV----LKYD- 303
           Q+     +AL+L+++M   G    ++T   VL AC  +  LE   ++H  +    L++D 
Sbjct: 218 QSGHSHHQALDLFEKMAEHGVRPCRATFVGVLGACNDVTSLE---KIHARIVETGLQFDV 274

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D+ + NALL+MY KCGSLE A  +F +M ++D +S + MI+  AQ G  +E++++F  M
Sbjct: 275 RDVGVQNALLNMYAKCGSLEVARDIFRKMQRRDQVSMNVMIATFAQQGLGKESIQVFREM 334

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGID---PGREHYSCMIDLLG 419
            +  +  +  T   V+ ACS  G +E G   H + ++   G     P     + ++ + G
Sbjct: 335 DLEGLPQDDTTFASVITACSCCGALEFGKRIHKRVVEPVLGRKCCLPNVVVETALVSMYG 394

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           + G L++A  +   M  + ++V+W A+L AC
Sbjct: 395 KCGTLEQAKAVFKAMTTK-NSVSWNAMLAAC 424



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 26/217 (11%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           F  Q     +++    M   G+  D  T+A +I  C    A+E  K +H  V+      +
Sbjct: 318 FAQQGLGKESIQVFREMDLEGLPQDDTTFASVITACSCCGALEFGKRIHKRVVEPVLGRK 377

Query: 109 TFLVNI-----LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL 163
             L N+     L++M+ K   LE+A+ +F  M  +N VSW  M++A       D+A   L
Sbjct: 378 CCLPNVVVETALVSMYGKCGTLEQAKAVFKAMTTKNSVSWNAMLAACAHQGQGDEAAAFL 437

Query: 164 IFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFE------SDVFVRSA----- 212
                EGV  +  ++ +VL AC         H G+++V ++      SD  +  A     
Sbjct: 438 RAAACEGVELDSASFISVLIACS--------HSGMLEVAYDHFQLMLSDFDLVPAAENYR 489

Query: 213 -LIDIYAKLGELRNAECVFNEMP-TRDLVVWNSIIGG 247
            ++D+ A+ G L +A+ + N MP + D + W +++GG
Sbjct: 490 CMVDLLARSGRLGDADELMNSMPFSPDAIAWRTLLGG 526


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/616 (37%), Positives = 354/616 (57%), Gaps = 41/616 (6%)

Query: 66  QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL 125
           QC+    +  T+  LIK      ++   + +H   +      + F+ N L++ +     L
Sbjct: 126 QCY---PNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDL 182

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
           + A  +F  + E++VVSW +MI+ +      DKALEL   M  E V+ +  T   VL AC
Sbjct: 183 DSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSAC 242

Query: 186 DSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF------------ 230
             +  L   RQ+   I +     ++ + +A++D+Y K G + +A+ +F            
Sbjct: 243 AKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWT 302

Query: 231 -------------------NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK-RAGFA 270
                              N MP +D+V WN++I  + QN   +EAL ++  ++ +    
Sbjct: 303 TMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMK 362

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSV 328
            +Q TL S L AC  +  LELG  +H ++ K+    +  + +AL+ MY KCG LE +  V
Sbjct: 363 LNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREV 422

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           F+ + ++DV  WS MI GLA +G   EA+ +F  M+ + +KPN +T   V  ACSH G V
Sbjct: 423 FNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLV 482

Query: 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
           ++  + F  M+  YGI P  +HY+C++D+LGR+G L++AVK I  MP  P    W ALLG
Sbjct: 483 DEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLG 542

Query: 449 ACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
           ACK+H N +LA  A  ++L L+P++ G ++LLSNIYA   KW+ V+E+RK MR  G+ KE
Sbjct: 543 ACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKE 602

Query: 509 PGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQ- 567
           PGCS IE++  IH F   D++HP  +K+   L  +++KL   GY P+ + VLQ +E E+ 
Sbjct: 603 PGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEM 662

Query: 568 KEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPI 627
           KE S+  HSEKLAI +GL+S    K IR+ KNLR+CGDCH+ AKL +++ ++ I++RD  
Sbjct: 663 KEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRY 722

Query: 628 RYHHFQDGNCSCGDYW 643
           R+HHF++G CSC D+W
Sbjct: 723 RFHHFRNGQCSCNDFW 738



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/417 (31%), Positives = 212/417 (50%), Gaps = 51/417 (12%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQMPE 137
           LI+ C++   + + K  H H++  G   + +  + L  M     F+ LE A+ +FD++P+
Sbjct: 36  LIERCVS---LRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPK 92

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIF--MLREG-VRPNMFTYSAVLRAC---DSLIIL 191
            N  +W T+I AY  A   D  L +  F  M+ E    PN +T+  +++A     SL + 
Sbjct: 93  PNSFAWNTLIRAY--ASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLG 150

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           + LH   +K    SDVFV ++LI  Y   G+L +A  VF  +  +D+V WNS+I GF Q 
Sbjct: 151 QSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQK 210

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV--HVHVLKYDHDLILN 309
              D+AL L+K+M+     A   T+  VL AC  +  LE G QV  ++   + + +L L 
Sbjct: 211 GSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLA 270

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA--------------------- 348
           NA+LDMY KCGS+EDA  +F  M +KD ++W+TM+ G A                     
Sbjct: 271 NAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIV 330

Query: 349 ----------QNGYSQEALKLFESMKVSR-IKPNYITIVGVLFACSHAGFVEDG-WNHFK 396
                     QNG   EAL +F  +++ + +K N IT+V  L AC+  G +E G W H  
Sbjct: 331 AWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIH-- 388

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           S  K +GI       S +I +  + G L+++ ++ + +  + D   W A++G   +H
Sbjct: 389 SYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMH 444



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 162/348 (46%), Gaps = 46/348 (13%)

Query: 40  SSLLDDFTRFCYQRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHN 98
           +S+++ F     Q+  P +A++    M+   V+A  VT   ++  C     +E  + V +
Sbjct: 201 NSMINGFV----QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCS 256

Query: 99  HVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
           ++          L N +L+M+ K   +E+A+ LFD M E++ V+WTTM+  Y  ++  + 
Sbjct: 257 YIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEA 316

Query: 159 ALELLIFM--------------------------------LREGVRPNMFTYSAVLRAC- 185
           A E+L  M                                L++ ++ N  T  + L AC 
Sbjct: 317 AREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACA 376

Query: 186 --DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
              +L + R +H  I K G   +  V SALI +Y+K G+L  +  VFN +  RD+ VW++
Sbjct: 377 QVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSA 436

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD 303
           +IGG A +   +EA++++ +M+ A    +  T T+V  AC+   L++    +  H ++ +
Sbjct: 437 MIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESL-FHQMESN 495

Query: 304 HDLILNN----ALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
           + ++        ++D+  + G LE A+     M I      W  ++  
Sbjct: 496 YGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGA 543


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/618 (37%), Positives = 346/618 (55%), Gaps = 52/618 (8%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   GVR DS TY   +  C    ++   K +H  V+    + + ++ + L+ ++ K   
Sbjct: 261 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS 320

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            +EA+ +F+ + +RN VSWT +I      +   K++EL   M  E +  + F  + ++  
Sbjct: 321 FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISG 380

Query: 185 CDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV-- 239
           C +   L + RQLH   +K G    + V ++LI +YAK G+L+NAE VF+ M  RD+V  
Sbjct: 381 CFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSW 440

Query: 240 -----------------------------VWNSIIGGFAQNSDVDEALNLYKRM-KRAGF 269
                                         WN+++G + Q+   ++ L +Y  M  +   
Sbjct: 441 TSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDV 500

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDA 325
             D  T  ++ R C  +   +LG Q+  H +K    LILN    NA + MY KCG + +A
Sbjct: 501 TPDWVTYVTLFRGCADIGANKLGDQIIGHTVK--AGLILNVSVANAAITMYSKCGRISEA 558

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F  +  KDV+SW+ MI+G +Q+G  ++A K F+ M     KP+YI+ V VL  CSH+
Sbjct: 559 QKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHS 618

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G V++G  +F  M + +GI PG EH+SCM+DLLGRAG L EA  LI +MP +P A  W A
Sbjct: 619 GLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGA 678

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LL ACK+H N +LA  AAK +  LD  D G+Y+LL+ IY+++ K D+ A+VRK MR +GI
Sbjct: 679 LLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGI 738

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            K PG SW+EV  ++H F   D SHPQ+  I   +  L++K+  +GY          +  
Sbjct: 739 KKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGY----------VRT 788

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           E     I +HSEKLA+ FG+MSL     I I KNLRICGDCHT  KL + + ++  VIRD
Sbjct: 789 ESPRSEI-HHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRD 847

Query: 626 PIRYHHFQDGNCSCGDYW 643
            +R+HHF+ G+CSCGDYW
Sbjct: 848 GVRFHHFKSGSCSCGDYW 865



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 167/306 (54%), Gaps = 9/306 (2%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
            P  F  N +L  + K   ++ A   F+ M ER+VVSW  MI+A   +    +AL L++ 
Sbjct: 201 RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVE 260

Query: 166 MLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           M R+GVR +  TY++ L AC  L  L   +QLH  +I+   + D +V SALI++YAK G 
Sbjct: 261 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS 320

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
            + A+ VFN +  R+ V W  +IGG  Q     +++ L+ +M+    A DQ  L +++  
Sbjct: 321 FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISG 380

Query: 283 CTGLALLELGTQVHVHVLKYDHD--LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           C     L LG Q+H   LK  H+  ++++N+L+ +Y KCG L++A  VFS M ++D++SW
Sbjct: 381 CFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSW 440

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           ++MI+  +Q G   +A + F+ M       N IT   +L A    G  EDG   + +M  
Sbjct: 441 TSMITAYSQIGNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLS 496

Query: 401 FYGIDP 406
              + P
Sbjct: 497 QKDVTP 502



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 199/456 (43%), Gaps = 65/456 (14%)

Query: 43  LDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLS 102
           L D  R C  R      +A+H                L+   LA     +  L+H ++  
Sbjct: 7   LADALRSCGSRGALAGARALHG--------------RLVTVGLASAVFLQNTLLHAYLSC 52

Query: 103 GGF------------EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
           G              EP     NI++N + K   L +A+ LFD+MP R+V SW T++S Y
Sbjct: 53  GALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGY 112

Query: 151 CDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESD 206
             A+     LE  + M R G   PN FT+  V+++C +L    +  QL     K  F  D
Sbjct: 113 FQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGD 172

Query: 207 VFVRSALIDI-------------------------------YAKLGELRNAECVFNEMPT 235
             V +AL+D+                               YAKL  + +A   F +M  
Sbjct: 173 PDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAE 232

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
           RD+V WN +I   +Q+  V EAL L   M R G   D +T TS L AC  L  L  G Q+
Sbjct: 233 RDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQL 292

Query: 296 HVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H  V++     D  + +AL+++Y KCGS ++A  VF+ +  ++ +SW+ +I G  Q    
Sbjct: 293 HAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECF 352

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
            ++++LF  M+   +  +   +  ++  C +   +  G     S+    G +      + 
Sbjct: 353 SKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLG-RQLHSLCLKSGHNRAIVVSNS 411

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           +I L  + G LQ A  +   M  E D V+W +++ A
Sbjct: 412 LISLYAKCGDLQNAEFVFSSMS-ERDIVSWTSMITA 446



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 147/345 (42%), Gaps = 47/345 (13%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
             ++++  + M+   +  D    A LI  C  R  +   + +H+  L  G      + N 
Sbjct: 352 FSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNS 411

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML------- 167
           L++++ K   L+ A+ +F  M ER++VSWT+MI+AY       KA E    M        
Sbjct: 412 LISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITW 471

Query: 168 -------------------------REGVRPNMFTYSAVLRACDSLIILR---QLHCGII 199
                                    ++ V P+  TY  + R C  +   +   Q+    +
Sbjct: 472 NAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTV 531

Query: 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN 259
           K G   +V V +A I +Y+K G +  A+ +F+ +  +D+V WN++I G++Q+    +A  
Sbjct: 532 KAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAK 591

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELG-------TQVHVHVLKYDHDLILNNAL 312
            +  M   G   D  +  +VL  C+   L++ G       T+VH      +H     + +
Sbjct: 592 TFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEH----FSCM 647

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVIS-WSTMISGLAQNGYSQEA 356
           +D+  + G L +A  +  +M  K     W  ++S    +G  + A
Sbjct: 648 VDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELA 692



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 29/242 (11%)

Query: 17  QARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVT 76
           +AR+F       +A+ N IT N+  +L  + +   + D  +   AM + +   V  D VT
Sbjct: 455 KAREF----FDGMATRNAITWNA--MLGAYIQHGAEEDGLKMYSAMLSQK--DVTPDWVT 506

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y  L + C    A +    +  H +  G      + N  + M+ K   + EAQ LFD + 
Sbjct: 507 YVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLN 566

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHC 196
            ++VVSW  MI+ Y    M  +A +    ML +G +P+  +Y AVL  C         H 
Sbjct: 567 GKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCS--------HS 618

Query: 197 GIIKVG-FESDVFVR-----------SALIDIYAKLGELRNAECVFNEMPTRDLV-VWNS 243
           G+++ G    D+  R           S ++D+  + G L  A+ + ++MP +    VW +
Sbjct: 619 GLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGA 678

Query: 244 II 245
           ++
Sbjct: 679 LL 680



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 11/128 (8%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHN-----HVLSGGFEPETFL 111
           +A K    M   G + D ++Y  ++  C     V+E KL  +     H +S G E  + +
Sbjct: 588 QAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCM 647

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVS-WTTMISAYCDAKMNDKALELLIFMLREG 170
           V++L     +   L EA+ L D+MP +     W  ++SA C    ND+  EL    + E 
Sbjct: 648 VDLL----GRAGHLTEAKDLIDKMPMKPTAEVWGALLSA-CKIHGNDELAELAAKHVFEL 702

Query: 171 VRPNMFTY 178
             P+  +Y
Sbjct: 703 DSPDSGSY 710


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/643 (36%), Positives = 360/643 (55%), Gaps = 53/643 (8%)

Query: 54  DLPRAMKAMHAM-QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
           D  RAMK    M +  G+R D+V+   ++  C +  A    K VH + L  G   + F+ 
Sbjct: 210 DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVG 269

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N +++M+ K  ++EEA  +F++M  ++VVSW  M++ Y      D AL L   +  E + 
Sbjct: 270 NAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIE 329

Query: 173 PNMFTYSAV-------------------LRACDS-------------------LIILRQL 194
            N+ T+SAV                   +R C S                   L+  ++ 
Sbjct: 330 LNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKET 389

Query: 195 HCGIIKVGFE-------SDVFVRSALIDIYAKLGELRNAECVFNEMPTRD--LVVWNSII 245
           HC  IK            D+ V +ALID+Y+K    + A  +F+ +P +D  +V W  +I
Sbjct: 390 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI 449

Query: 246 GGFAQNSDVDEALNLYKRMKRAG--FAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD 303
           GG AQ+ + +EAL L+ +M +       +  T++  L AC  L  L  G Q+H +VL+  
Sbjct: 450 GGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNR 509

Query: 304 HD---LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
            +   L + N L+DMY K G ++ A  VF  M Q++ +SW+++++G   +G  +EAL++F
Sbjct: 510 FESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIF 569

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420
             M+   + P+ +T V VL+ACSH+G V+ G N+F  M K +G+ PG EHY+CM+DLL R
Sbjct: 570 YEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSR 629

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480
           AG+L EA++LI  MP +P    W ALL AC+V+ N +L   AA ++L L+  + G+Y LL
Sbjct: 630 AGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLL 689

Query: 481 SNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHL 540
           SNIYAN++ W +VA +R  M+  GI K PGCSW++  K    F   D SHP   +I   L
Sbjct: 690 SNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLL 749

Query: 541 KHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNL 600
           + L+Q++  +GY PD  + L D++ E+K D +  HSEKLA+ +G+++   G  IRI KNL
Sbjct: 750 RDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNL 809

Query: 601 RICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           R CGDCH+     + +    I++RD  R+HHF++G+CSC  YW
Sbjct: 810 RACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 123/409 (30%), Positives = 195/409 (47%), Gaps = 51/409 (12%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM--PERNVVSWTTM 146
           ++  A+L+H  +L  G   +      +++M++ F+   +A  +  ++      V  W  +
Sbjct: 41  SLASAELIHQQLLVQGLPHDP---THIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQL 97

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGF 203
           I         +  L+L   M R G RP+ +T+  VL+AC  +   R    +H  +   GF
Sbjct: 98  IRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGF 157

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTR---DLVVWNSIIGGFAQNSDVDEALNL 260
           E +VFV + L+ +Y + G   NA  VF+EM  R   DLV WNSI+  + Q  D   A+ +
Sbjct: 158 EWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKM 217

Query: 261 YKRMKR-AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYC 317
           ++RM    G   D  +L +VL AC  +     G QVH + L+     D+ + NA++DMY 
Sbjct: 218 FERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYA 277

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           KCG +E+A  VF RM  KDV+SW+ M++G +Q G   +AL LFE ++  +I+ N +T   
Sbjct: 278 KCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSA 337

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           V+     AG+ + G         F  +D  R+   C                       E
Sbjct: 338 VI-----AGYAQRGLG-------FEALDVFRQMRLC---------------------GSE 364

Query: 438 PDAVTWRALLGACKVH----RNTDLAICAAKKILNLDPQDPGTYILLSN 482
           P+ VT  +LL  C +        +    A K ILNLD  DPG  +++ N
Sbjct: 365 PNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVIN 413


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/618 (37%), Positives = 346/618 (55%), Gaps = 52/618 (8%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   GVR DS TY   +  C    ++   K +H  V+    + + ++ + L+ ++ K   
Sbjct: 251 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS 310

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            +EA+ +F+ + +RN VSWT +I      +   K++EL   M  E +  + F  + ++  
Sbjct: 311 FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISG 370

Query: 185 CDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV-- 239
           C +   L + RQLH   +K G    + V ++LI +YAK G+L+NAE VF+ M  RD+V  
Sbjct: 371 CFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSW 430

Query: 240 -----------------------------VWNSIIGGFAQNSDVDEALNLYKRM-KRAGF 269
                                         WN+++G + Q+   ++ L +Y  M  +   
Sbjct: 431 TSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDV 490

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDA 325
             D  T  ++ R C  +   +LG Q+  H +K    LILN    NA + MY KCG + +A
Sbjct: 491 TPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAG--LILNVSVANAAITMYSKCGRISEA 548

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F  +  KDV+SW+ MI+G +Q+G  ++A K F+ M     KP+YI+ V VL  CSH+
Sbjct: 549 QKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHS 608

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G V++G  +F  M + +GI PG EH+SCM+DLLGRAG L EA  LI +MP +P A  W A
Sbjct: 609 GLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGA 668

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LL ACK+H N +LA  AAK +  LD  D G+Y+LL+ IY+++ K D+ A+VRK MR +GI
Sbjct: 669 LLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGI 728

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            K PG SW+EV  ++H F   D SHPQ+  I   +  L++K+  +GY          +  
Sbjct: 729 KKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGY----------VRT 778

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           E     I +HSEKLA+ FG+MSL     I I KNLRICGDCHT  KL + + ++  VIRD
Sbjct: 779 ESPRSEI-HHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRD 837

Query: 626 PIRYHHFQDGNCSCGDYW 643
            +R+HHF+ G+CSCGDYW
Sbjct: 838 GVRFHHFKSGSCSCGDYW 855



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 167/306 (54%), Gaps = 9/306 (2%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
            P  F  N +L  + K   ++ A   F+ M ER+VVSW  MI+A   +    +AL L++ 
Sbjct: 191 RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVE 250

Query: 166 MLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           M R+GVR +  TY++ L AC  L  L   +QLH  +I+   + D +V SALI++YAK G 
Sbjct: 251 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS 310

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
            + A+ VFN +  R+ V W  +IGG  Q     +++ L+ +M+    A DQ  L +++  
Sbjct: 311 FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISG 370

Query: 283 CTGLALLELGTQVHVHVLKYDHD--LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           C     L LG Q+H   LK  H+  ++++N+L+ +Y KCG L++A  VFS M ++D++SW
Sbjct: 371 CFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSW 430

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           ++MI+  +Q G   +A + F+ M       N IT   +L A    G  EDG   + +M  
Sbjct: 431 TSMITAYSQIGNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLS 486

Query: 401 FYGIDP 406
              + P
Sbjct: 487 QKDVTP 492



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 194/445 (43%), Gaps = 47/445 (10%)

Query: 32  CNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVE 91
           C  +    +  L D  R C  R      +A+H                L+   LA     
Sbjct: 12  CRLLPHAVTQALADALRSCGSRGALAGARALHG--------------RLVTVGLASAVFL 57

Query: 92  EAKLVHNHVLSGGF------------EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139
           +  L+H ++  G              EP     NI++N + K   L +A+ LFD+MP R+
Sbjct: 58  QNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRD 117

Query: 140 VVSWTTMISAY---CDAKMNDKAL---ELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ 193
           V SW T++S       + M+  AL   EL   +L    + + +    V  A   + +   
Sbjct: 118 VASWNTLMSDTSRPAGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFV--- 174

Query: 194 LHCGIIKVGF-------ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
             CG +              +F R++++  YAKL  + +A   F +M  RD+V WN +I 
Sbjct: 175 -RCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIA 233

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DH 304
             +Q+  V EAL L   M R G   D +T TS L AC  L  L  G Q+H  V++     
Sbjct: 234 ALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQI 293

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           D  + +AL+++Y KCGS ++A  VF+ +  ++ +SW+ +I G  Q     ++++LF  M+
Sbjct: 294 DPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMR 353

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
              +  +   +  ++  C +   +  G     S+    G +      + +I L  + G L
Sbjct: 354 AELMAIDQFALATLISGCFNRMDLCLG-RQLHSLCLKSGHNRAIVVSNSLISLYAKCGDL 412

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGA 449
           Q A  +   M  E D V+W +++ A
Sbjct: 413 QNAEFVFSSMS-ERDIVSWTSMITA 436



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 147/345 (42%), Gaps = 47/345 (13%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
             ++++  + M+   +  D    A LI  C  R  +   + +H+  L  G      + N 
Sbjct: 342 FSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNS 401

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML------- 167
           L++++ K   L+ A+ +F  M ER++VSWT+MI+AY       KA E    M        
Sbjct: 402 LISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITW 461

Query: 168 -------------------------REGVRPNMFTYSAVLRACDSLIILR---QLHCGII 199
                                    ++ V P+  TY  + R C  +   +   Q+    +
Sbjct: 462 NAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTV 521

Query: 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN 259
           K G   +V V +A I +Y+K G +  A+ +F+ +  +D+V WN++I G++Q+    +A  
Sbjct: 522 KAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAK 581

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELG-------TQVHVHVLKYDHDLILNNAL 312
            +  M   G   D  +  +VL  C+   L++ G       T+VH      +H     + +
Sbjct: 582 TFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEH----FSCM 637

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVIS-WSTMISGLAQNGYSQEA 356
           +D+  + G L +A  +  +M  K     W  ++S    +G  + A
Sbjct: 638 VDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELA 682



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 29/242 (11%)

Query: 17  QARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVT 76
           +AR+F       +A+ N IT N+  +L  + +   + D  +   AM + +   V  D VT
Sbjct: 445 KAREF----FDGMATRNAITWNA--MLGAYIQHGAEEDGLKMYSAMLSQK--DVTPDWVT 496

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y  L + C    A +    +  H +  G      + N  + M+ K   + EAQ LFD + 
Sbjct: 497 YVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLN 556

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHC 196
            ++VVSW  MI+ Y    M  +A +    ML +G +P+  +Y AVL  C         H 
Sbjct: 557 GKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCS--------HS 608

Query: 197 GIIKVG-FESDVFVR-----------SALIDIYAKLGELRNAECVFNEMPTRDLV-VWNS 243
           G+++ G    D+  R           S ++D+  + G L  A+ + ++MP +    VW +
Sbjct: 609 GLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGA 668

Query: 244 II 245
           ++
Sbjct: 669 LL 670



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 11/128 (8%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHN-----HVLSGGFEPETFL 111
           +A K    M   G + D ++Y  ++  C     V+E KL  +     H +S G E  + +
Sbjct: 578 QAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCM 637

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVS-WTTMISAYCDAKMNDKALELLIFMLREG 170
           V++L     +   L EA+ L D+MP +     W  ++SA C    ND+  EL    + E 
Sbjct: 638 VDLL----GRAGHLTEAKDLIDKMPMKPTAEVWGALLSA-CKIHGNDELAELAAKHVFEL 692

Query: 171 VRPNMFTY 178
             P+  +Y
Sbjct: 693 DSPDSGSY 700


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/689 (36%), Positives = 372/689 (53%), Gaps = 99/689 (14%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVE 91
           N I   +  + +   R   Q + P  A     +M  + + AD+ TY  LI+ C  R +  
Sbjct: 36  NFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEW 95

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNM-------------------------------HV 120
           EAK VHNHVL  GF+ + ++ N L+N                                ++
Sbjct: 96  EAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYI 155

Query: 121 KFSLLEEAQVLFDQMPERNV-------------------------------VSWTTMISA 149
           +   +EEA+ ++ QMPER++                               V+W+ +I+ 
Sbjct: 156 EIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIAC 215

Query: 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESD 206
           +   +M ++A+   + M + GV  +     + L AC +L+++   + +H   +K+G ES 
Sbjct: 216 FQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESY 275

Query: 207 VFVRSALIDIYAKLGELR-------------------------------NAECVFNEMPT 235
           + +++ALI +Y+K G++                                NA+ +F+ MP 
Sbjct: 276 INLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPE 335

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
           +D+V W+S+I G+AQN   DE L L++ M+ +GF  D++TL SV+ AC  LA LE G  V
Sbjct: 336 KDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWV 395

Query: 296 HVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H ++ +     ++IL   L+DMY KCG +E A+ VF  MI+K + +W+ +I GLA NG  
Sbjct: 396 HAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLV 455

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
           + +L +F +MK   + PN IT +GVL AC H G V++G +HF SM   + I P  +HY C
Sbjct: 456 ESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGC 515

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           M+DLLGRAGKLQEA +L++ MP  PD  TW ALLGACK H ++++     +K++ L P  
Sbjct: 516 MVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDH 575

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQI 533
            G ++LLSNIYA+  KWD+V E+R  M    + K PGCS IE N  IH F   D +HP +
Sbjct: 576 DGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDM 635

Query: 534 DKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT 593
           D I   L  +  KL   GY PD N VL D++ E+KE ++  HSEKLAI FGL++++    
Sbjct: 636 DAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTP 695

Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIV 622
           IRI KNLRIC DCHT AKL +K   + IV
Sbjct: 696 IRIMKNLRICNDCHTAAKLISKAFCRKIV 724



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 194/449 (43%), Gaps = 104/449 (23%)

Query: 100 VLSGGFEPETFLVNILLNM--HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND 157
           +L  GF  ET+  + L+    H  F  ++  + +F+ +   N   W  MI AY       
Sbjct: 1   MLLTGFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPH 60

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALI 214
            A  L   ML   +  + +TY  +++AC    S    +Q+H  ++K+GF+SDV+VR+ LI
Sbjct: 61  FAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLI 120

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           + ++    + +A  VFNE    D V WNSI+ G+ +  +V+EA ++Y +M      A  S
Sbjct: 121 NCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNS 180

Query: 275 TLT--------------------------SVLRAC------------TGLALLELGTQVH 296
            +                           S L AC            T + + ++G  V 
Sbjct: 181 MIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVD 240

Query: 297 ----------------VHVLKYDHDLIL----------NNALLDMYCKCGSL-------- 322
                           V++ K  H L L           NAL+ MY KCG +        
Sbjct: 241 EVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFD 300

Query: 323 -----------------------EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
                                  ++A ++F  M +KDV+SWS+MISG AQN    E L L
Sbjct: 301 EAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLAL 360

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLL 418
           F+ M++S  KP+  T+V V+ AC+    +E G W H  +  K  G+       + +ID+ 
Sbjct: 361 FQEMQMSGFKPDETTLVSVISACARLAALEQGKWVH--AYIKRNGLTINVILGTTLIDMY 418

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
            + G ++ A+++ + M  E    TW AL+
Sbjct: 419 MKCGCVETALEVFYGM-IEKGISTWNALI 446


>gi|302782375|ref|XP_002972961.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
 gi|300159562|gb|EFJ26182.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
          Length = 601

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/580 (38%), Positives = 355/580 (61%), Gaps = 9/580 (1%)

Query: 70  VRADSVTYAELIKCC--LARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           ++ +  TY  ++K C  L    +E+ K +H H ++ GF  +  + N L++M+ K    + 
Sbjct: 25  LQQNQATYVTVLKSCAHLGDDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSFKF 84

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A  +FD+M  +N++S+T+MI AY     + +A EL   ML EG+ P+++ Y+A L  C +
Sbjct: 85  AAGVFDKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAALAVCPT 144

Query: 188 LIILRQLHCGIIKVG-FESDVFVRS-ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
           +     +H   +K+G  E    V S AL+ +Y + G + +A+ VF+ +  +DL  +N++I
Sbjct: 145 IREGEAIH---VKLGNHERRTPVCSNALVGMYGRFGRIASAKWVFDGIRYKDLASYNNMI 201

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH- 304
             FA+  D  +A++LY  M+      +  T TSVL AC+ L  L  G ++H  V   D  
Sbjct: 202 AVFAKYDDGSKAISLYIEMEGRNLEPNLWTYTSVLDACSKLGALTEGKEIHKKVKGGDQP 261

Query: 305 -DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D+  N AL++MY KCGS  +A +VF+    K+V +W++++S  +Q G SQ  L+ ++ M
Sbjct: 262 TDVAYNTALVNMYAKCGSAHEARAVFNDCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQRM 321

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
               + P+ +T   +  ACSH+G  ++G  +F++M++ + I P + HY+CMIDLLGR G+
Sbjct: 322 NCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVPLQPHYTCMIDLLGRVGR 381

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L+EA +L+  MPY PD VTW  LL ACKV+ +  +   A K+I  L+P D G Y+L+ N+
Sbjct: 382 LREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRITELNPPDSGPYLLMGNM 441

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           YA + KW +VAEV+K ++ RG+ K PG S IE  ++IH F   D++HP   +I   L+ +
Sbjct: 442 YAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHEFVCGDTAHPLNQEIRARLQEV 501

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
            ++L   GY PDT  VL D+  E K + + +HSE++A+  GL++   G T+ I KNLRIC
Sbjct: 502 HEQLSHAGYEPDTKEVLVDVNEEVKPELLLFHSERMALGLGLLTSDAGATLHIVKNLRIC 561

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            DCH+F KL +KM ++ +++RD  R+H FQ G+CSCGDYW
Sbjct: 562 PDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCSCGDYW 601



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 156/310 (50%), Gaps = 13/310 (4%)

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC-----DSLIILRQLHCGIIKV 201
           + AY +  ++ KAL+L    + E ++ N  TY  VL++C     D L   +++H   I  
Sbjct: 1   MGAYQENDLHKKALQLFKKSINEELQQNQATYVTVLKSCAHLGDDYLEDGKEIHRHAIAQ 60

Query: 202 GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLY 261
           GF +D+ V+++LI +YAK G  + A  VF++M  ++L+ + S+I  +   +   EA  LY
Sbjct: 61  GFGTDLVVQNSLIHMYAKCGSFKFAAGVFDKMEPKNLISYTSMIQAYTHTAKHVEAYELY 120

Query: 262 KRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL-ILNNALLDMYCKCG 320
           K+M   G   D     + L  C     +  G  +HV +  ++    + +NAL+ MY + G
Sbjct: 121 KKMLSEGIMPDIYAYAAALAVC---PTIREGEAIHVKLGNHERRTPVCSNALVGMYGRFG 177

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
            +  A  VF  +  KD+ S++ MI+  A+     +A+ L+  M+   ++PN  T   VL 
Sbjct: 178 RIASAKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTYTSVLD 237

Query: 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHY-SCMIDLLGRAGKLQEAVKLIHEMPYEPD 439
           ACS  G + +G    K +K   G  P    Y + ++++  + G   EA  + ++   + +
Sbjct: 238 ACSKLGALTEGKEIHKKVKG--GDQPTDVAYNTALVNMYAKCGSAHEARAVFNDCGLK-N 294

Query: 440 AVTWRALLGA 449
             TW +L+ A
Sbjct: 295 VFTWTSLMSA 304



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 13/225 (5%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           F    D  +A+     M+   +  +  TY  ++  C    A+ E K +H  V  GG +P 
Sbjct: 204 FAKYDDGSKAISLYIEMEGRNLEPNLWTYTSVLDACSKLGALTEGKEIHKKV-KGGDQPT 262

Query: 109 TFLVNI-LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
               N  L+NM+ K     EA+ +F+    +NV +WT+++SAY     +   LE    M 
Sbjct: 263 DVAYNTALVNMYAKCGSAHEARAVFNDCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQRMN 322

Query: 168 REGVRPNMFTYSAVLRAC-------DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKL 220
            EGV P+  T++A+  AC       + L+  R +      V  +      + +ID+  ++
Sbjct: 323 CEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVPLQPHY---TCMIDLLGRV 379

Query: 221 GELRNAECVFNEMP-TRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
           G LR AE +   MP + D+V W  ++       D+      YKR+
Sbjct: 380 GRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRI 424


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/564 (39%), Positives = 333/564 (59%), Gaps = 15/564 (2%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
            +++H   L  G + +  L N LL+M+ +    EEA+ LF+ +P  N VSW TMI+    
Sbjct: 342 GRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPG-NAVSWNTMIAGSSQ 400

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS-------LIILRQLHCGIIKVGFES 205
                +ALEL   M  EG+ P   TY  +L A  S       +   R+LH  I+  G+ S
Sbjct: 401 KGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYAS 460

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNE--MPTR-DLVVWNSIIGGFAQNSDVDEALNLYK 262
           +  + +A++ +YA  G +  A   F    M  R D+V WN+II   +Q+     AL  ++
Sbjct: 461 EPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFR 520

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCG 320
           RM   G A +Q T  +VL AC G A L  G  VH H+     + ++ +  AL  MY +CG
Sbjct: 521 RMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRCG 580

Query: 321 SLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL 379
           SLE A  +F ++ +++DV+ ++ MI+  +QNG + EALKLF  M+    +P+  + V VL
Sbjct: 581 SLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVL 640

Query: 380 FACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD 439
            ACSH G  ++GW  F+SM++ YGI P  +HY+C +D+LGRAG L +A +LI  M  +P 
Sbjct: 641 SACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPT 700

Query: 440 AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKT 499
            + W+ LLGAC+ +R+ D    A   +  LDP D   Y++LSNI A + KWDE AEVR  
Sbjct: 701 VLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTE 760

Query: 500 MRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYV 559
           M +RG+ K+ G SWIE+  ++H F   D SHP+ ++I + L+ L  ++  +GY PDT  V
Sbjct: 761 MESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLV 820

Query: 560 LQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQ 619
           L+ ++  +KE  +  HSE+LAI  G+MS +   T+R+ KNLR+C DCH   K  +K+ N+
Sbjct: 821 LRKVDEAEKERLLCQHSERLAIALGVMS-SSTDTVRVMKNLRVCEDCHNATKFISKIVNK 879

Query: 620 TIVIRDPIRYHHFQDGNCSCGDYW 643
            IV+RD  R+HHF DG+CSCGDYW
Sbjct: 880 EIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 135/434 (31%), Positives = 220/434 (50%), Gaps = 16/434 (3%)

Query: 36  TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL 95
            R+ +S     T +       RA+   H MQ  GVR D+VT+  ++K C     + + + 
Sbjct: 90  VRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRS 149

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  ++  G E ++ L N+LL+++     +  A +LF++M ER++VSW   I+A   +  
Sbjct: 150 IHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSGD 208

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALID 215
            D ALEL   M  EGVRP   T    L  C  +   R +H  + + G E  + V +AL  
Sbjct: 209 LDMALELFQRMQLEGVRPARITLVITLSVCAKIRQARAIHSIVRESGLEQTLVVSTALAS 268

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
            YA+LG L  A+ VF+    RD+V WN+++G +AQ+  + EA  L+ RM   G    + T
Sbjct: 269 AYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVT 328

Query: 276 LTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
           L +   A TG + L  G  +H   L+   D D++L NALLDMY +CGS E+A  +F   I
Sbjct: 329 LVN---ASTGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFE-GI 384

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS----HAGFVE 389
             + +SW+TMI+G +Q G  + AL+LF+ M++  + P   T + +L A +     A  + 
Sbjct: 385 PGNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMA 444

Query: 390 DGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP--DAVTWRAL 446
           +G   H + +   Y  +P     + ++ +    G + EA         E   D V+W A+
Sbjct: 445 EGRKLHSRIVSCGYASEPAIG--TAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAI 502

Query: 447 LGACKVHRNTDLAI 460
           + +   H +   A+
Sbjct: 503 ISSLSQHGHGKRAL 516



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 126/417 (30%), Positives = 210/417 (50%), Gaps = 21/417 (5%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
           + + + +H  ++S G E E  L N LL +++K   L + + +F ++  R+  SWTT+I+A
Sbjct: 45  LSQGRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESD 206
           Y +     +A+ +   M +EGVR +  T+ AVL+AC  L  L   R +H  I++ G E  
Sbjct: 103 YTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGK 162

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
             + + L+ IY   G + +A  +F  M  RDLV WN+ I   AQ+ D+D AL L++RM+ 
Sbjct: 163 SVLANLLLHIYGSCGCVASAMLLFERME-RDLVSWNAAIAANAQSGDLDMALELFQRMQL 221

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLED 324
            G    + TL   L  C   A +     +H  V     +  L+++ AL   Y + G L+ 
Sbjct: 222 EGVRPARITLVITLSVC---AKIRQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQ 278

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           A  VF R  ++DV+SW+ M+   AQ+G+  EA  LF  M    I P+ +T+V     CS 
Sbjct: 279 AKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCSS 338

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
             F      H  +++K  G+D      + ++D+  R G  +EA  L   +P   +AV+W 
Sbjct: 339 LRFGR--MIHACALEK--GLDRDIVLGNALLDMYTRCGSPEEARHLFEGIP--GNAVSWN 392

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQDP--GTYI-LLSNIYANSQKWDEVAEVRK 498
            ++           A+   ++ + L+   P   TY+ LL  + +N ++   +AE RK
Sbjct: 393 TMIAGSSQKGQMKRALELFQR-MQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRK 448



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 23/233 (9%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           RA+     M  HGV  + +T   ++  C    A+ E  +VH+H+   G E   F+   L 
Sbjct: 514 RALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATALA 573

Query: 117 NMHVKFSLLEEAQVLFDQMP-ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
           +M+ +   LE A+ +F+++  ER+VV +  MI+AY    +  +AL+L   M +EG RP+ 
Sbjct: 574 SMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDE 633

Query: 176 FTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSAL------------IDIYAKLGEL 223
            ++ +VL AC         H G+   G+E    +R +             +D+  + G L
Sbjct: 634 QSFVSVLSACS--------HGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWL 685

Query: 224 RNAECVFNEMPTRDLV-VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
            +AE +   M  +  V VW +++G   +  DVD    L   M R     D+S 
Sbjct: 686 ADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRG-RLANSMVRELDPGDESA 737



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 115/239 (48%), Gaps = 19/239 (7%)

Query: 276 LTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK 335
           L  +LRA     LL  G ++H  ++    +  L N LL +Y KC SL D   VFSR+  +
Sbjct: 32  LVRLLRAAGDDRLLSQGRRIHARIVSLGLEEELGNHLLRLYLKCESLGDVEEVFSRLEVR 91

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
           D  SW+T+I+   ++G ++ A+ +F  M+   ++ + +T + VL AC+  G +  G    
Sbjct: 92  DEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQG---- 147

Query: 396 KSMKKFYGIDPGREHYSCMIDLL----GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
           +S+  +  ++ G E  S + +LL    G  G +  A+ L   M  E D V+W A + A  
Sbjct: 148 RSIHAWI-VESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM--ERDLVSWNAAIAANA 204

Query: 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
              + D+A+   ++ + L+   P    L+  +          A++R+      I +E G
Sbjct: 205 QSGDLDMALELFQR-MQLEGVRPARITLVITLSV-------CAKIRQARAIHSIVRESG 255


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/597 (38%), Positives = 352/597 (58%), Gaps = 20/597 (3%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE----------TFLVNI 114
           MQ H +R ++ T   L+     + A+ +   VH + +                   L   
Sbjct: 219 MQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTA 278

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV--- 171
           LL+M+ K   L  A+ +FD MP RN V+W+ +I  +       +A  L   ML +G+   
Sbjct: 279 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL 338

Query: 172 RPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
            P   + ++ LRAC SL  LR   QLH  + K G  +D+   ++L+ +YAK G +  A  
Sbjct: 339 SPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIA 396

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           +F+EM  +D V +++++ G+ QN   +EA  ++K+M+      D +T+ S++ AC+ LA 
Sbjct: 397 LFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAA 456

Query: 289 LELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           L+ G   H  V+      +  + NAL+DMY KCG ++ +  VF+ M  +D++SW+TMI+G
Sbjct: 457 LQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAG 516

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
              +G  +EA  LF  M      P+ +T + +L ACSH+G V +G + F  M+  YG+ P
Sbjct: 517 YGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTP 576

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
             EHY CM+DLL R G L EA + I  MP   D   W ALLGAC+V++N DL    ++ I
Sbjct: 577 RMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMI 636

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
             L P+  G ++LLSNIY+ + ++DE AEVR   + +G  K PGCSWIE+N  +HAF   
Sbjct: 637 QELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGG 696

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D SHPQ  +I + L +++  +  +GY PDT++VLQDLE E+KE ++  HSEKLAI +G++
Sbjct: 697 DQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGIL 756

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           SL++ KTI + KNLR+CGDCHT  K  + ++ + I++RD  R+HHF++G CSCGD+W
Sbjct: 757 SLSEDKTIFVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/432 (30%), Positives = 218/432 (50%), Gaps = 21/432 (4%)

Query: 68  HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           H V  ++ T+   +K C A       + +H H +  G + + F+   LL+M+VK + L +
Sbjct: 119 HRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPD 178

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE--GVRPNMFTYSAVLRAC 185
           A  +F  MP R++V+W  M++ Y    M   A+  L+ M  +   +RPN  T  A+L   
Sbjct: 179 AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLL 238

Query: 186 DSLIILRQ---LHCGIIKVGFESD----------VFVRSALIDIYAKLGELRNAECVFNE 232
                L Q   +H   I+    S+          V + +AL+D+YAK G L  A  VF+ 
Sbjct: 239 AQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 298

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLRACTGLALLEL 291
           MP R+ V W+++IGGF   S + +A  L+K M   G      +++ S LRAC  L  L +
Sbjct: 299 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRM 358

Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G Q+H  + K     DL   N+LL MY K G ++ A+++F  M  KD +S+S ++SG  Q
Sbjct: 359 GEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQ 418

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           NG ++EA  +F+ M+   ++P+  T+V ++ ACSH   ++ G     S+    G+     
Sbjct: 419 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSV-IIRGLASETS 477

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
             + +ID+  + G++  + ++ + MP   D V+W  ++    +H     A     ++ NL
Sbjct: 478 ICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHGLGKEATALFLEMNNL 536

Query: 470 D-PQDPGTYILL 480
             P D  T+I L
Sbjct: 537 GFPPDGVTFICL 548



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 128/482 (26%), Positives = 214/482 (44%), Gaps = 52/482 (10%)

Query: 119 HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA--LELLIFMLREGVRPNMF 176
           H+    L  A  LFDQ+P  +V ++  +I AY  +     A  L L   MLR  V PN +
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 177 TYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T+   L+AC +L      R +H   I  G ++D+FV +AL+D+Y K   L +A  +F  M
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALN--LYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           P RDLV WN+++ G+A +     A+   L  +M+      + STL ++L        L  
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 292 GTQVHVHVL------------KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
           GT VH + +            K    ++L  ALLDMY KCGSL  A  VF  M  ++ ++
Sbjct: 247 GTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT 306

Query: 340 WSTMISGLAQNGYSQEALKLFESM---KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
           WS +I G        +A  LF++M    +  + P   +I   L AC+    +  G     
Sbjct: 307 WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMG-EQLH 363

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
           ++    G+       + ++ +  +AG + +A+ L  EM  + D V++ AL+     +   
Sbjct: 364 ALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSGYVQNGRA 422

Query: 457 DLAICAAKKI--LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG---- 510
           + A    KK+   N++P D  T + L    ++            ++  RG+  E      
Sbjct: 423 EEAFLVFKKMQACNVEP-DAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNA 481

Query: 511 -------CSWIEVNKQIHAFNVADS----------SHPQIDKINKHLKHLIQKLVGVGYA 553
                  C  I++++Q+  FN+  S          +   I  + K    L  ++  +G+ 
Sbjct: 482 LIDMYAKCGRIDLSRQV--FNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFP 539

Query: 554 PD 555
           PD
Sbjct: 540 PD 541


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/595 (37%), Positives = 355/595 (59%), Gaps = 10/595 (1%)

Query: 58   AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            A+K    M+   +   + T    +  C +   +   + +H   L  G + +  + N LL 
Sbjct: 474  AVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLA 533

Query: 118  MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND-KALELLIFMLREGVRPNMF 176
            ++ +   ++E Q  F  M + + VSW ++I A  D++ +  +A+E  + M+R G  PN  
Sbjct: 534  LYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRV 593

Query: 177  TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
            T+  +L A  SL +    +Q+H  ++K    +D  + +AL+  Y K G++   E +F+ M
Sbjct: 594  TFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRM 653

Query: 234  PTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
              R D V WNS+I G+  N  + +A+++   M + G   D  T  +VL AC  +A LE G
Sbjct: 654  SDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERG 713

Query: 293  TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
             +VH   ++   + D+++ +AL+DMY KCG ++ A   F  M  +++ SW++MISG A++
Sbjct: 714  MEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARH 773

Query: 351  GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
            G+  ++L LF  MK+    P+++T VGVL ACSHAG V +G++HF SM + YG+ P  EH
Sbjct: 774  GHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEH 833

Query: 411  YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC--KVHRNTDLAICAAKKILN 468
            +SCM+DLLGR G+L +    +++MP +P+ + WR +LGAC     RNT L   AA+ +L 
Sbjct: 834  FSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLE 893

Query: 469  LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
            ++P +   YILLSN+YA+  KWD+VA+ R  MR   + KE GCSW+ +   +H F   D 
Sbjct: 894  MEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDK 953

Query: 529  SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
            SHP+ D I + LK L  K+   GY P+T + L DLEGE KE+ + YHSEK+A+ F +++ 
Sbjct: 954  SHPEKDLIYEKLKELNGKMRLAGYIPETRFALYDLEGESKEELLSYHSEKIAVAF-VLTR 1012

Query: 589  TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
                 IRI KNLR+CGDCH+  K  +++  + IV+RD  R+HHF++G CSCGD+W
Sbjct: 1013 PSKMPIRILKNLRVCGDCHSAFKYISQIVERQIVLRDSNRFHHFENGKCSCGDFW 1067



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 218/430 (50%), Gaps = 27/430 (6%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCC--LARHAVEEAKLVH 97
           S L+  +TR    R    A +    M   G   +   +  +I+ C     + ++    +H
Sbjct: 143 SCLISGYTR---NRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIH 199

Query: 98  NHVLSGGFEPETFLVNILLNMHVK-FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
             +    +  +    N+L++M+     +++ A+  FD +  RN+VS  +MIS YC     
Sbjct: 200 GLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDA 259

Query: 157 DKALELLIFMLRE----GVRPNMFTYSAVLRACDSL-----IILRQLHCGIIKVGFESDV 207
             A ++   M +E    G++PN +T+ +++ A  SL     ++L QL   + K GF  D+
Sbjct: 260 VSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDL 319

Query: 208 FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
           +V SAL+  +AK G +  A+ +F +M  R++V  N +I G  +    +EA+ L+  MK +
Sbjct: 320 YVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDS 379

Query: 268 GFAADQSTLTSVLRACTGLALLE----LGTQVHVHVLK---YDHDLILNNALLDMYCKCG 320
               + ++   +L A     +LE     G++VH  +++    +  + + N L++MY KCG
Sbjct: 380 -VELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCG 438

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
           ++ DA  VF  M  KD ++W++MI+GL QN    EA+K F+ M+ + + P+  T++  L 
Sbjct: 439 AINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALS 498

Query: 381 ACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD 439
           +C+  G++  G   H + +K   G+D      + ++ L G  G ++E  K    M  + D
Sbjct: 499 SCASLGWISVGEQLHCEGLK--LGLDLDVSVSNALLALYGECGYVKECQKAFSLM-LDYD 555

Query: 440 AVTWRALLGA 449
            V+W +L+GA
Sbjct: 556 HVSWNSLIGA 565



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 194/380 (51%), Gaps = 30/380 (7%)

Query: 91  EEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
           ++A+ +H  +   GF  + FL N L+N++ +   L   + +FD+MP RN+VSW+ +IS Y
Sbjct: 90  KDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGY 149

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD-----SLIILRQLHCGIIKVGFES 205
              +M ++A EL   M+ +G  PN + + +V+RAC       L    Q+H  + K  + +
Sbjct: 150 TRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVN 209

Query: 206 DVFVRSALIDIYAK-LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
           DV   + LI +Y   LG +  A   F+ +  R+LV  NS+I  + Q  D   A +++  M
Sbjct: 210 DVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTM 269

Query: 265 KRA----GFAADQSTLTSVLRAC-----TGLALLELGTQVHVHVLK--YDHDLILNNALL 313
           ++     G   ++ T  S++ A      +GL LLE   Q+   V K  + HDL + +AL+
Sbjct: 270 QKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLE---QLLTRVEKSGFLHDLYVGSALV 326

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS-RIKPNY 372
             + K GS+  A ++F +M  ++V+S + +I GL +    +EA++LF  MK S  + PN 
Sbjct: 327 SGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNS 386

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY-----SCMIDLLGRAGKLQEA 427
             I+   F   H   +E+G      +  F  I  G  +      + +I++  + G + +A
Sbjct: 387 YMIILTAFPEFHV--LENGKRKGSEVHAFL-IRSGLLNAQIAIGNGLINMYAKCGAINDA 443

Query: 428 VKLIHEMPYEPDAVTWRALL 447
             +   M    D+VTW +++
Sbjct: 444 CVVFRLMD-NKDSVTWNSMI 462



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 21/217 (9%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           LP+AM  +  M   G R D  T+A ++  C     +E    VH   +    E +  + + 
Sbjct: 675 LPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSA 734

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           L++M+ K   ++ A   F+ MP RN+ SW +MIS Y       K+L+L   M  +G  P+
Sbjct: 735 LVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPD 794

Query: 175 MFTYSAVLRACDSLIILRQLHCGIIKVGFE-----SDVFVR-------SALIDIYAKLGE 222
             T+  VL AC         H G++  GF      S+++         S ++D+  ++GE
Sbjct: 795 HVTFVGVLSACS--------HAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGE 846

Query: 223 LRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEAL 258
           L   E   N+MP + ++++W +++G   + +  + AL
Sbjct: 847 LNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTAL 883


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/526 (40%), Positives = 328/526 (62%), Gaps = 7/526 (1%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV--RPNMFTYSAVL 182
           +E+   LF +MP RNV+SWT+MI        +++AL L   M+  GV  +P   TY  V+
Sbjct: 135 VEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVI 194

Query: 183 RACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
            AC +   L Q   +H  + K+G+  D ++ +ALI  YA   ++ ++  VF+     ++V
Sbjct: 195 TACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVV 254

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
           +W +++ G+  N   ++AL ++  M R G   +QS+ TS L +C GL  L+ G ++H   
Sbjct: 255 IWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAA 314

Query: 300 LKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           +K   + D+ + N+L+ MY +CG+L D + +F R+ +K+++SW+++I G AQ+G    AL
Sbjct: 315 VKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWAL 374

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
             F  M  S ++P+ IT  G+L ACSH+G  + G   FK   +    +   +HY+CM+D+
Sbjct: 375 AFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDI 434

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           LGR+GKL+EA +LI  MP + +++ W  LL AC +H   ++A  AAK I++L+P     Y
Sbjct: 435 LGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAY 494

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           +LLSN+YA++ +W +V+ +R+ M+ RGITK+PG SWI +    + F   D SHP  D+I 
Sbjct: 495 VLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIY 554

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
           + L+ L  KL  +GY PD  + L D+E EQKE  + YHSE+LAI FGL+S  +G TI + 
Sbjct: 555 QKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTITVM 614

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLR+CGDCH+  KL AK+  + I++RD  R+HHF DG CSCGDYW
Sbjct: 615 KNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 660



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 173/376 (46%), Gaps = 21/376 (5%)

Query: 85  LARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWT 144
           L    ++EA+ V + V      P+ +L  +++  + +    + A  LF +MP ++VVSW 
Sbjct: 6   LRNQRIDEARTVFDKVSF----PDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWN 61

Query: 145 TMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFE 204
           +MI    D      A +L   M    V     +++ ++        +        K+ F 
Sbjct: 62  SMIKGCFDCADLTMARKLFDEMPERSV----VSWTTMINGFLQFGKIEVAEGLFYKMPFR 117

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
            D+   +++I  Y   G + +   +F EMP R+++ W S+IGG  Q+   +EAL L+++M
Sbjct: 118 -DIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQM 176

Query: 265 KRAGFAAD--QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCG 320
              G       ST   V+ AC   + L  G Q+H HV K  Y  D  ++ AL+  Y  C 
Sbjct: 177 MGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCK 236

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
            +ED++ VF   +  +V+ W+ +++G   N   ++ALK+F  M    + PN  +    L 
Sbjct: 237 QMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALN 296

Query: 381 ACSHAGFVEDGWN---HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           +C   G     W    H  ++K   G++      + +I +  R G L + V +   +  +
Sbjct: 297 SC--CGLEALDWGREIHTAAVK--LGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS-K 351

Query: 438 PDAVTWRALLGACKVH 453
            + V+W +++  C  H
Sbjct: 352 KNIVSWNSVIVGCAQH 367



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 146/287 (50%), Gaps = 15/287 (5%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V+  S TY  +I  C    A+ +   +H HV   G+  + ++   L+  +     +E++ 
Sbjct: 183 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSL 242

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            +F      NVV WT +++ Y     ++ AL++   M+REGV PN  ++++ L +C  L 
Sbjct: 243 RVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLE 302

Query: 190 IL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            L   R++H   +K+G E+DVFV ++LI +Y + G L +   +F  +  +++V WNS+I 
Sbjct: 303 ALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIV 362

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT-------GLALLELGTQVHVHV 299
           G AQ+     AL  + +M R+    D+ T T +L AC+       G  L +  ++     
Sbjct: 363 GCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAE 422

Query: 300 LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMIS 345
           +K DH       ++D+  + G LE+A  +   M ++ + + W  ++S
Sbjct: 423 VKLDH----YACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLS 465



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++L+  +   C   D   A+K    M   GV  +  ++   +  C    A++  + +H  
Sbjct: 257 TALVTGYGLNCKHED---ALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTA 313

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
            +  G E + F+ N L+ M+ +   L +  V+F ++ ++N+VSW ++I           A
Sbjct: 314 AVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWA 373

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVR----SALID 215
           L     M+R  V P+  T++ +L AC    + ++  C            V+    + ++D
Sbjct: 374 LAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVD 433

Query: 216 IYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
           I  + G+L  AE +   MP + + +VW  ++     +S ++ A
Sbjct: 434 ILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVA 476


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/554 (39%), Positives = 334/554 (60%), Gaps = 5/554 (0%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           DL ++ +    MQ  G+R +  TY  +++ C     ++  + +H+  +  GFE + ++  
Sbjct: 325 DLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSG 384

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
           +L++M+ K+  LE+A+ + + + E++VVSWT+MI+ Y   +    AL     M + G+ P
Sbjct: 385 VLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWP 444

Query: 174 NMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +    ++ +  C  +  +RQ   +H  I   G+  DV + +AL+++YA+ G +R A   F
Sbjct: 445 DNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSF 504

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
            EM  +D +  N ++ GFAQ+   +EAL ++ RM ++G   +  T  S L A   LA ++
Sbjct: 505 EEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIK 564

Query: 291 LGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G Q+H  V+K  H  +  + NAL+ +Y KCGS EDA   FS M +++ +SW+T+I+  +
Sbjct: 565 QGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCS 624

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           Q+G   EAL LF+ MK   IKPN +T +GVL ACSH G VE+G ++FKSM   YGI P  
Sbjct: 625 QHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRP 684

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           +HY+C+ID+ GRAG+L  A K I EMP   DA+ WR LL ACKVH+N ++   AAK +L 
Sbjct: 685 DHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLE 744

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           L+P D  +Y+LLSN YA ++KW    +VRK MR RG+ KEPG SWIEV   +HAF V D 
Sbjct: 745 LEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDR 804

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
            HP  ++I   L  +  ++  VGY  +  ++  D E E ++ +   HSEKLA+ FGLMSL
Sbjct: 805 LHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSL 864

Query: 589 TQGKTIRIRKNLRI 602
                +R+ KNLR+
Sbjct: 865 PPCMPLRVIKNLRV 878



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 129/404 (31%), Positives = 215/404 (53%), Gaps = 13/404 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    MQ  G+  D VT + L+  C +   +++   +H+++   G   +  +   LL+
Sbjct: 228 ALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLD 287

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND--KALELLIFMLREGVRPNM 175
           ++VK   +E A V+F+     NVV W  M+ A+   ++ND  K+ EL   M   G+RPN 
Sbjct: 288 LYVKCGDVETALVIFNSSDRTNVVLWNLMLVAF--GQINDLAKSFELFCQMQAAGIRPNQ 345

Query: 176 FTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           FTY  +LR C     + +  Q+H   +K GFESD++V   LID+Y+K G L  A  V   
Sbjct: 346 FTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEM 405

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           +  +D+V W S+I G+ Q+    +AL  +K M++ G   D   L S +  C G+  +  G
Sbjct: 406 LKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQG 465

Query: 293 TQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
            Q+H  ++V  Y  D+ + NAL+++Y +CG + +A S F  M  KD I+ + ++SG AQ+
Sbjct: 466 LQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQS 525

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGRE 409
           G  +EALK+F  M  S +K N  T V  L A ++   ++ G   H + +K  +  +   E
Sbjct: 526 GLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFET--E 583

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             + +I L G+ G  ++A     EM  E + V+W  ++ +C  H
Sbjct: 584 VGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQH 626



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 202/376 (53%), Gaps = 7/376 (1%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H   ++ G      + N+L++++ K  L+  A+ +F+++  R+ VSW  M+S Y    +
Sbjct: 64  IHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGL 123

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSA 212
            ++AL L   M R GV P  +  S+VL +C    +  Q   +H    K GF S++FV +A
Sbjct: 124 GEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNA 183

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           +I +Y + G  R AE VF +MP RD V +N++I G AQ    + AL +++ M+ +G + D
Sbjct: 184 VITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPD 243

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
             T++S+L AC  L  L+ GTQ+H ++ K     D I+  +LLD+Y KCG +E A+ +F+
Sbjct: 244 CVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFN 303

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
              + +V+ W+ M+    Q     ++ +LF  M+ + I+PN  T   +L  C+    ++ 
Sbjct: 304 SSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDL 363

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G     S+    G +        +ID+  + G L++A +++ EM  E D V+W +++   
Sbjct: 364 G-EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMIAGY 421

Query: 451 KVHRNTDLAICAAKKI 466
             H     A+ A K++
Sbjct: 422 VQHECCKDALAAFKEM 437



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/396 (28%), Positives = 201/396 (50%), Gaps = 9/396 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M   GV       + ++  C       + +L+H      GF  E F+ N ++ 
Sbjct: 127 ALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVIT 186

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++++      A+ +F  MP R+ V++ T+IS +      + ALE+   M   G+ P+  T
Sbjct: 187 LYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVT 246

Query: 178 YSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            S++L AC SL  L+   QLH  + K G  SD  +  +L+D+Y K G++  A  +FN   
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSD 306

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             ++V+WN ++  F Q +D+ ++  L+ +M+ AG   +Q T   +LR CT    ++LG Q
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQ 366

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H   +K  ++ D+ ++  L+DMY K G LE A  V   + +KDV+SW++MI+G  Q+  
Sbjct: 367 IHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEC 426

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHY 411
            ++AL  F+ M+   I P+ I +   +  C+    +  G   H +     Y  D     +
Sbjct: 427 CKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDV--SIW 484

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           + +++L  R G+++EA     EM  + D +T   L+
Sbjct: 485 NALVNLYARCGRIREAFSSFEEMELK-DGITGNGLV 519



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 158/321 (49%), Gaps = 8/321 (2%)

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS----LII 190
           M  R   S    ++ +   +   K L L     R+        ++  LRAC        +
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQV 60

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           + ++H   +  G      V + LID+Y+K G +  A  VF E+  RD V W +++ G+AQ
Sbjct: 61  VPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQ 120

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLIL 308
           N   +EAL LY++M RAG       L+SVL +CT   L   G  +H    K+    ++ +
Sbjct: 121 NGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFV 180

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            NA++ +Y +CGS   A  VF  M  +D ++++T+ISG AQ G+ + AL++FE M+ S +
Sbjct: 181 GNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGL 240

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
            P+ +TI  +L AC+  G ++ G      + K  GI         ++DL  + G ++ A+
Sbjct: 241 SPDCVTISSLLAACASLGDLQKGTQLHSYLFK-AGISSDYIMEGSLLDLYVKCGDVETAL 299

Query: 429 KLIHEMPYEPDAVTWRALLGA 449
            +I       + V W  +L A
Sbjct: 300 -VIFNSSDRTNVVLWNLMLVA 319


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 198/370 (53%), Positives = 271/370 (73%), Gaps = 2/370 (0%)

Query: 276 LTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
           +  +LRAC  +A LE G QVH  ++K  ++ D+ ++N L+DMY KCG +EDA  VFS+++
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393
           + DV SW+ MISGLAQ+G  +EA+ LFE M  + +KPN IT V VL  CSHAG V++G N
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           +F SM + +GI P  EHYSCM+DL GRAG L EA+  I++MP EP+A  W +LLGAC+VH
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 454 RNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSW 513
            N +LA  A ++++ L P++PGTY+LLSNIYA + +WD+  +VRK M+ R + KEPGCSW
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSW 240

Query: 514 IEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQ 573
           IEV  ++H F V DSSHPQI++I + L+ L  ++   GY P+TN+VL D+E EQKE  + 
Sbjct: 241 IEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILG 300

Query: 574 YHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQ 633
           +HSEKLAI FG++S   G TIR+ KNLR+CGDCHT  K  +++ ++ IV+RD  R+HHF+
Sbjct: 301 HHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFK 360

Query: 634 DGNCSCGDYW 643
           DG CSCGDYW
Sbjct: 361 DGQCSCGDYW 370



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 124/230 (53%), Gaps = 12/230 (5%)

Query: 179 SAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235
           + +LRAC S+  L   +Q+H  IIK+GFE DV V + L+D+Y K G + +A+ VF+++  
Sbjct: 2   AGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLE 61

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
            D+  WN++I G AQ+    EA+ L+++M + G   +Q T   VL  C+   L++ G   
Sbjct: 62  PDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN- 120

Query: 296 HVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQN 350
           +   +  DH +       + ++D++ + G L++A++  ++M ++ +   W +++     +
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 351 GYSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           G  + A +  E + +++   P    ++  ++A   AG  +D     K MK
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAA--AGRWDDAGKVRKMMK 228



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 21/193 (10%)

Query: 78  AELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE 137
           A +++ C +  A+E+ K VH  ++  GFE +  + N L++M+ K   +E+AQ +F ++ E
Sbjct: 2   AGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLE 61

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCG 197
            +V SW  MIS         +A+ L   ML+ GV+PN  T+  VL  C         H G
Sbjct: 62  PDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCS--------HAG 113

Query: 198 IIKVGFES-DVFVR-----------SALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSI 244
           ++  G    D   R           S ++D++ + G L  A    N+MP   +  VW S+
Sbjct: 114 LVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSL 173

Query: 245 IGGFAQNSDVDEA 257
           +G    + +++ A
Sbjct: 174 LGACRVHGNIELA 186


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/610 (38%), Positives = 357/610 (58%), Gaps = 15/610 (2%)

Query: 41  SLLDDFTRFCYQRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           SL +   R       P  A+   H M   G++ D +TY  +IK C          LVH H
Sbjct: 161 SLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTH 220

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD-AKMNDK 158
           V+  GFE ++++V+ L++++     L  A+ LF+    R+VVSW  MI  Y    +M   
Sbjct: 221 VVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHA 280

Query: 159 ALELLIFMLREGVRPNMFT--YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDI 216
            +     + R+ +  N     Y+ V +  ++  +  ++         E ++   ++++  
Sbjct: 281 RMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMP--------ERNLVSWNSMLAG 332

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           + K G + +A  +F+EMP RD+V WNS++  +AQ    +EAL L+ +M+  G    ++T+
Sbjct: 333 FVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATV 392

Query: 277 TSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
            S+L AC  L  L+ G  +H ++   + + + I+  AL+DMY KCG +  A  VF+ M  
Sbjct: 393 VSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMES 452

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
           KDV++W+T+I+G+A +G  +EA +LF+ MK + ++PN IT V +L ACSHAG V++G   
Sbjct: 453 KDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKL 512

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR 454
              M   YGI+P  EHY C+IDLL RAG L+EA++LI  MP EP+     ALLG C++H 
Sbjct: 513 LDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHG 572

Query: 455 NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWI 514
           N +L     K+++NL P   G YILLSNIYA ++KWD+  +VR  M+  GI+K PG S I
Sbjct: 573 NFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVI 632

Query: 515 EVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL-VGVGYAPDTNYVLQDLEGEQKEDSIQ 573
           E+   +H F   D SHP+ +KI + L  +  +L   +GY+ DT  VL D+E E KE ++ 
Sbjct: 633 ELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALA 692

Query: 574 YHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQ 633
            HSEKLAI +GL+ L   + IRI KNLR+C DCH   KL +K+  + I++RD  R+HHF+
Sbjct: 693 VHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFE 752

Query: 634 DGNCSCGDYW 643
           DG CSC D+W
Sbjct: 753 DGECSCLDFW 762



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 178/340 (52%), Gaps = 11/340 (3%)

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
           + L  A+ +F  +       + ++I A   +K   +AL L   ML+ G++P+  TY  V+
Sbjct: 143 TFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVI 202

Query: 183 RACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
           +AC+   +      +H  ++K GFE D ++ S+LI +YA   +L  A+ +FN    RD+V
Sbjct: 203 KACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVV 262

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
            WN++I G+ ++ ++  A  ++ RM       D  +  +++     +  ++   ++   +
Sbjct: 263 SWNAMIDGYVKHVEMGHARMVFDRM----VCRDVISWNTMINGYAIVGKIDEAKRLFDEM 318

Query: 300 LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
              + +L+  N++L  + KCG++EDA  +FS M  +DV+SW++M++  AQ G   EAL L
Sbjct: 319 --PERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALAL 376

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F+ M+   +KP   T+V +L AC+H G ++ G  H  +      I+      + ++D+  
Sbjct: 377 FDQMRAVGVKPTEATVVSLLSACAHLGALDKGL-HLHTYINDNRIEVNSIVGTALVDMYA 435

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
           + GK+  A ++ + M  + D + W  ++    +H N   A
Sbjct: 436 KCGKISLATQVFNAMESK-DVLAWNTIIAGMAIHGNVKEA 474


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/577 (38%), Positives = 337/577 (58%), Gaps = 4/577 (0%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R DS T+   +  C     +   + V +     G++ + F+ + LL+++ ++  + +A  
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           +FD+MP R+ V+W+TM++ +  A     A+++   M  +GV+ +      V++AC +   
Sbjct: 165 VFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARN 224

Query: 191 LR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           +R    +H  +++ G   DV   ++L+D+YAK G L  A  VF  M  R+ V W+++I G
Sbjct: 225 VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISG 284

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDL 306
           FAQN   DEAL L++ M+ +G   D   L S L AC+ +  L+LG  VH  +++ +D + 
Sbjct: 285 FAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNC 344

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
           IL  A +DMY KCGSL  A  +F+ +  +D+I W+ MI+    +G  Q+AL LF+ M  +
Sbjct: 345 ILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNET 404

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
            ++P++ T   +L A SH+G VE+G   F  M   + I P  +HY C++DLL R+G ++E
Sbjct: 405 GMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEE 464

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           A  L+  M  EP    W ALL  C  ++  +L    A  IL L P D G   L+SN+YA 
Sbjct: 465 ASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAA 524

Query: 487 SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
           ++KWD+V +VRK M+  G  K PGCS IE+    HAF + D SHPQ ++I   +  L  +
Sbjct: 525 TKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLDLE 584

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           +  +GY P T +V  DLE E KE  + YHSEKLAI FGL++   G  + I KNLR+CGDC
Sbjct: 585 MRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVCGDC 644

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           H   K  +K+ ++ IV+RD  R+HHF+DG CSC DYW
Sbjct: 645 HDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 173/356 (48%), Gaps = 23/356 (6%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+  GV+ D V    +I+ C A   V     VH H+L  G   +      L++
Sbjct: 193 AIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVD 252

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K  LL+ A  +F  M  RN VSW+ MIS +     +D+AL L   M   G++P+   
Sbjct: 253 MYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGA 312

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             + L AC ++  L   R +H G I   F+ +  + +A ID+Y+K G L +A+ +FN + 
Sbjct: 313 LVSALLACSNIGFLKLGRSVH-GFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMIS 371

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE---- 290
            RDL++WN++I     +    +AL L++ M   G   D +T  S+L A +   L+E    
Sbjct: 372 DRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKL 431

Query: 291 -LGTQV-HVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS-WSTMISGL 347
             G  V H  +   +   +    L+D+  + G +E+A  + + M  +  ++ W  ++SG 
Sbjct: 432 WFGCMVNHFKITPAEKHYV---CLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGC 488

Query: 348 AQNGYSQEALKLFESM--KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
             N    + L+L ES+   +  ++P+    VGVL   S+       W+  + ++K 
Sbjct: 489 LNN----KKLELGESIADNILELQPDD---VGVLALVSNLYAATKKWDKVRQVRKL 537



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 130/273 (47%), Gaps = 7/273 (2%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF-A 249
           L +LH  +I     +   + S+L   YA+ G+L  AE           +   + I    +
Sbjct: 27  LARLHALLIVSSSATHTLI-SSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAHS 85

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           +      AL +++ +  A    D +T T  L AC  L  L  G  V        Y  D+ 
Sbjct: 86  RRGSPASALRVFRALPPAA-RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVF 144

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + ++LL +Y + G++ DA+ VF RM ++D ++WSTM++G    G   +A++++  M+   
Sbjct: 145 VCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDG 204

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           +K + + ++GV+ AC+ A  V  G +    + + +G+       + ++D+  + G L  A
Sbjct: 205 VKGDEVVMIGVIQACTAARNVRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLLDVA 263

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            ++   M +  D V+W A++     +  +D A+
Sbjct: 264 CRVFGLMVHRND-VSWSAMISGFAQNGQSDEAL 295


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/604 (37%), Positives = 356/604 (58%), Gaps = 8/604 (1%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHG--VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGG 104
           + F  + D+  A   +  MQ  G  ++A+ VT   ++  CL +  +   K +H +     
Sbjct: 322 SAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHC 381

Query: 105 FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
           F+    L N  +  + K   L  A+ +F  + ++ V SW  +I  +       KAL LL 
Sbjct: 382 FQ-HVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLF 440

Query: 165 FMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
            M   G +P+ FT S++L AC    SL   +++H  +++ G E+D FV ++L+  Y   G
Sbjct: 441 QMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCG 500

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
           +  +A  +F+ M  ++LV WN++I G++QN    E+L L+++    G  + +  + SV  
Sbjct: 501 KASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFG 560

Query: 282 ACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
           AC+ L+ L LG + H +VLK     D  +  +++DMY K G ++++  VF  +  K+V S
Sbjct: 561 ACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVAS 620

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           W+ +I     +G+ +EA++L+E MK     P+  T +G+L AC HAG VE+G  +FK M+
Sbjct: 621 WNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQ 680

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
            F  I+P  EHY+C+ID+L RAG+L +A++L++EMP E D   W +LL +C+     ++ 
Sbjct: 681 NFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIG 740

Query: 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQ 519
              AKK+L L+P     Y+LLSN+YA   KWD V  VR+ M+  G+ K+ GCSWIEV  +
Sbjct: 741 EKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGR 800

Query: 520 IHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKL 579
           +++F V DS  P+  +I    + L +++  +GY P+T+ VL ++  E+K D ++ HSEKL
Sbjct: 801 VYSFVVGDSLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEEKIDILRGHSEKL 860

Query: 580 AIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
           AI FGL+  T+G T+RI KNLRIC DCH  AKL +K   + IV+RD  R+HHF+DG CSC
Sbjct: 861 AISFGLLKTTKGTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSC 920

Query: 640 GDYW 643
            DYW
Sbjct: 921 CDYW 924



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 190/354 (53%), Gaps = 13/354 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++L+  +TR     D+ +    M  +     + D+ T+  +IK C     V   +++H  
Sbjct: 114 NALVSGYTRNGLYGDVVKVF--MDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGM 171

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           V+  G   + F+ N L+ M+ K   ++EA  +FD MPE N+VSW +MI A+ +   +  +
Sbjct: 172 VIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDS 231

Query: 160 LELLIFML-REGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALID 215
            +LL+ ML  EG+ P++ T   +L  C     + I   +H   +K+G   +V V +A++ 
Sbjct: 232 FDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVY 291

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG--FAADQ 273
           +Y+K G L  A+  F +   +++V WN++I  F+   DV+EA NL + M+  G    A++
Sbjct: 292 MYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANE 351

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDH---DLILNNALLDMYCKCGSLEDAMSVFS 330
            T+ +VL AC  L  L+L +   +H   + H    + L+NA +  Y KCG+L  A  VF 
Sbjct: 352 VTILNVLPAC--LDKLQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGALNSAEKVFH 409

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
            +  K V SW+ +I G AQNG  ++AL L   M  S  +P++ TI  +L AC+H
Sbjct: 410 GIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAH 463



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 135/430 (31%), Positives = 217/430 (50%), Gaps = 16/430 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           +S++  F+   + RD    +  M  +   G+  D VT   ++  C     V+    +H  
Sbjct: 216 NSMICAFSENGFSRDSFDLL--MEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGL 273

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
            +  G   E  + N ++ M+ K   L EAQ+ F +   +NVVSW TMISA+      ++A
Sbjct: 274 AVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEA 333

Query: 160 LELLIFMLREG--VRPNMFTYSAVLRAC-DSLII--LRQLHCGIIKVGFESDVFVRSALI 214
             LL  M  +G  ++ N  T   VL AC D L +  L++LH    +  F+  V + +A I
Sbjct: 334 FNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQH-VELSNAFI 392

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
             YAK G L +AE VF+ +  + +  WN++IGG AQN D  +AL+L  +M  +G   D  
Sbjct: 393 LAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWF 452

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           T++S+L AC  L  L+ G ++H +VL+   + D  +  +LL  Y  CG    A  +F RM
Sbjct: 453 TISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRM 512

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
             K+++SW+ MISG +QNG   E+L LF       I+ + I IV V  ACS    +  G 
Sbjct: 513 KDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGK 572

Query: 393 N-HFKSMKKFYGIDPGREHYSC-MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
             H   +K     D       C +ID+  ++G ++E+ K+   +  + +  +W A++ A 
Sbjct: 573 EAHGYVLKALQTEDA---FVGCSIIDMYAKSGCIKESRKVFDGLK-DKNVASWNAIIVAH 628

Query: 451 KVHRNTDLAI 460
            +H +   AI
Sbjct: 629 GIHGHGKEAI 638



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 210/433 (48%), Gaps = 32/433 (7%)

Query: 38  NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAE------LIKCCLARHAVE 91
           N  S L +    C   +L  A+  +   Q H   A  ++         L++ C  +  +E
Sbjct: 4   NRPSFLQEIAALCETDNLTTALILI---QSHSQNAAFISLQAKEAIGLLLQACGNQKDIE 60

Query: 92  EAKLVHNHVLSGGFEPETFLVNI-LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
             + +H  V         +++N  L+ M+       +++++FD M  +N++ W  ++S Y
Sbjct: 61  TGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGY 120

Query: 151 CDAKMNDKALELLIFMLRE-GVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESD 206
               +    +++ + ++ +   +P+ FT+ +V++AC  ++ +R    +H  +IK+G   D
Sbjct: 121 TRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLD 180

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-K 265
           VFV +AL+ +Y K G +  A  VF+ MP  +LV WNS+I  F++N    ++ +L   M  
Sbjct: 181 VFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLG 240

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLE 323
             G   D  T+ ++L  C G   +++G  +H   +K     ++++NNA++ MY KCG L 
Sbjct: 241 EEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLN 300

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV--SRIKPNYITIVGVLFA 381
           +A   F +   K+V+SW+TMIS  +  G   EA  L + M++    +K N +TI+ VL A
Sbjct: 301 EAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPA 360

Query: 382 CSHAGFVEDGWNHFKSMKKFYGID-----PGREHYSCMIDLLGRAGKLQEAVKLIHEMPY 436
           C             +S+K+ +G          E  +  I    + G L  A K+ H +  
Sbjct: 361 CLDK-------LQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGALNSAEKVFHGIG- 412

Query: 437 EPDAVTWRALLGA 449
           +    +W AL+G 
Sbjct: 413 DKTVSSWNALIGG 425


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/526 (40%), Positives = 328/526 (62%), Gaps = 7/526 (1%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV--RPNMFTYSAVL 182
           +E+   LF +MP RNV+SWT+MI        +++AL L   M+  GV  +P   TY  V+
Sbjct: 151 VEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVI 210

Query: 183 RACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
            AC +   L Q   +H  + K+G+  D ++ +ALI  YA   ++ ++  VF+     ++V
Sbjct: 211 TACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVV 270

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
           +W +++ G+  N   ++AL ++  M R G   +QS+ TS L +C GL  L+ G ++H   
Sbjct: 271 IWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAA 330

Query: 300 LKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           +K   + D+ + N+L+ MY +CG+L D + +F R+ +K+++SW+++I G AQ+G    AL
Sbjct: 331 VKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWAL 390

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
             F  M  S ++P+ IT  G+L ACSH+G  + G   FK   +    +   +HY+CM+D+
Sbjct: 391 AFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDI 450

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           LGR+GKL+EA +LI  MP + +++ W  LL AC +H   ++A  AAK I++L+P     Y
Sbjct: 451 LGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAY 510

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           +LLSN+YA++ +W +V+ +R+ M+ RGITK+PG SWI +    + F   D SHP  D+I 
Sbjct: 511 VLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIY 570

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
           + L+ L  KL  +GY PD  + L D+E EQKE  + YHSE+LAI FGL+S  +G TI + 
Sbjct: 571 QKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTITVM 630

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLR+CGDCH+  KL AK+  + I++RD  R+HHF DG CSCGDYW
Sbjct: 631 KNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 676



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 178/387 (45%), Gaps = 21/387 (5%)

Query: 74  SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFD 133
           + +Y  +I   L    ++EA+ V + V      P+ +L  +++  + +    + A  LF 
Sbjct: 11  TFSYQSMITDHLRNQRIDEARTVFDKVSF----PDVYLYTMMITGYARNYRFDHALQLFY 66

Query: 134 QMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ 193
           +MP ++VVSW +MI    D      A +L   M    V     +++ ++        +  
Sbjct: 67  EMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSV----VSWTTMINGFLQFGKIEV 122

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
                 K+ F  D+   +++I  Y   G + +   +F EMP R+++ W S+IGG  Q+  
Sbjct: 123 AEGLFYKMPFR-DIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGR 181

Query: 254 VDEALNLYKRMKRAGFAAD--QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILN 309
            +EAL L+++M   G       ST   V+ AC   + L  G Q+H HV K  Y  D  ++
Sbjct: 182 SEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYIS 241

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
            AL+  Y  C  +ED++ VF   +  +V+ W+ +++G   N   ++ALK+F  M    + 
Sbjct: 242 AALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVL 301

Query: 370 PNYITIVGVLFACSHAGFVEDGWN---HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
           PN  +    L +C   G     W    H  ++K   G++      + +I +  R G L +
Sbjct: 302 PNQSSFTSALNSC--CGLEALDWGREIHTAAVK--LGLETDVFVGNSLIVMYYRCGNLND 357

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVH 453
            V +   +  + + V+W +++  C  H
Sbjct: 358 GVVIFKRIS-KKNIVSWNSVIVGCAQH 383



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 146/287 (50%), Gaps = 15/287 (5%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V+  S TY  +I  C    A+ +   +H HV   G+  + ++   L+  +     +E++ 
Sbjct: 199 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSL 258

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            +F      NVV WT +++ Y     ++ AL++   M+REGV PN  ++++ L +C  L 
Sbjct: 259 RVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLE 318

Query: 190 IL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            L   R++H   +K+G E+DVFV ++LI +Y + G L +   +F  +  +++V WNS+I 
Sbjct: 319 ALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIV 378

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT-------GLALLELGTQVHVHV 299
           G AQ+     AL  + +M R+    D+ T T +L AC+       G  L +  ++     
Sbjct: 379 GCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAE 438

Query: 300 LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMIS 345
           +K DH       ++D+  + G LE+A  +   M ++ + + W  ++S
Sbjct: 439 VKLDH----YACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLS 481



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++L+  +   C   D   A+K    M   GV  +  ++   +  C    A++  + +H  
Sbjct: 273 TALVTGYGLNCKHED---ALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTA 329

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
            +  G E + F+ N L+ M+ +   L +  V+F ++ ++N+VSW ++I           A
Sbjct: 330 AVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWA 389

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVR----SALID 215
           L     M+R  V P+  T++ +L AC    + ++  C            V+    + ++D
Sbjct: 390 LAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVD 449

Query: 216 IYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
           I  + G+L  AE +   MP + + +VW  ++     +S ++ A
Sbjct: 450 ILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVA 492


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/576 (39%), Positives = 340/576 (59%), Gaps = 8/576 (1%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
            YA +++ C+   AV   + +H  +L  G   +  L   L++++    L+  A+ LFD+M
Sbjct: 65  NYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEM 124

Query: 136 PER-NVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSLIIL-- 191
           P + NV  W  +I AY      + A+EL   ML  G + P+ FTY  VL+AC +L+ L  
Sbjct: 125 PNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGA 184

Query: 192 -RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
            R++H  +++  + +DVFV + LID+YAK G +  A  VF+    RD VVWNS+I    Q
Sbjct: 185 GREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQ 244

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
           N    EAL L + M   G A    TL S + A      L  G ++H +  +  +     L
Sbjct: 245 NGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKL 304

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK-VSR 367
             +LLDMY K G +  A  +F ++  +++ISW+ MI G   +G++  A +LF  M+  ++
Sbjct: 305 KTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQ 364

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           + P++IT VGVL AC+H G V++    F  M   Y I P  +HY+C++D+LG +G+ +EA
Sbjct: 365 VMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEA 424

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487
             +I  M  +PD+  W ALL  CK+H+N +LA  A  K++ L+P+D G Y+LLSNIYA S
Sbjct: 425 SDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSNIYAQS 484

Query: 488 QKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL 547
            KW+E A VRK M  RG+ K   CSWIE+  + H F V D+SHP+ D+I + L+ L   +
Sbjct: 485 GKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELERLEGLI 544

Query: 548 VGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCH 607
              GY PDT  V  ++E ++K + ++ HSE+LAI FGL+S   G  + + KNLR+C DCH
Sbjct: 545 SQTGYVPDTTSVFHNVEDDEKRNMVRGHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCH 604

Query: 608 TFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
              KL +++E + I+IRD  RYHHF +G CSC D+W
Sbjct: 605 VVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 640



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 151/307 (49%), Gaps = 11/307 (3%)

Query: 51  YQRDLPR--AMKAMHAM-QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           Y RD PR  A++    M  C  +  D+ TY  ++K C A   +   + VH+ V+   +  
Sbjct: 140 YARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRTSWAA 199

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           + F+   L++M+ K   ++EA  +FD    R+ V W +MI+A        +AL L   M 
Sbjct: 200 DVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMA 259

Query: 168 REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
            EG+ P + T  + + A      L   R+LH    + GF S   ++++L+D+YAK G + 
Sbjct: 260 AEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVT 319

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK-RAGFAADQSTLTSVLRAC 283
            A  +F+++  R+L+ WN++I GF  +   D A  L++RM+  A    D  T   VL AC
Sbjct: 320 VARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSAC 379

Query: 284 TGLALLELGTQVH-VHVLKYDHDLILNN--ALLDMYCKCGSLEDAMSVFSRMIQK-DVIS 339
               +++   +V  + V  Y    ++ +   L+D+    G  ++A  V   M+ K D   
Sbjct: 380 NHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGI 439

Query: 340 WSTMISG 346
           W  +++G
Sbjct: 440 WGALLNG 446


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/678 (35%), Positives = 370/678 (54%), Gaps = 81/678 (11%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEE-AKLVHNHVLSGGF 105
           T + +  D   A++   AM+    R D  T+  ++   +     E+    +H  V+  G 
Sbjct: 120 TGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGM 179

Query: 106 E-PETFLVNILLNMHVK--------FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
               + ++N LL+++VK         S +  A+ LFD+MP+R+ ++WTTMI+ Y      
Sbjct: 180 GCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDL 239

Query: 157 DKALELLIFMLRE-------------------------------GVRPNMFTYSAVLRAC 185
           + A E+   M+                                 G++ +  TY+ ++ AC
Sbjct: 240 NGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISAC 299

Query: 186 ---DSLIILRQLHCGIIKVGFESD----VFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
               S  + +Q+H  I+K     +    + V +ALI +Y K  ++  A  +F  MP R++
Sbjct: 300 ANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNI 359

Query: 239 VVWNSIIGGF-------------------------------AQNSDVDEALNLYKRMKRA 267
           + WN+I+ G+                               AQN   DE L L+K+M+  
Sbjct: 360 ITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLD 419

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDA 325
           GF          L AC+ L  LE G Q+H  +  L Y+  L + NA++ MY KCG +E A
Sbjct: 420 GFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAA 479

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
            SVF  M   D++SW++MI+ L Q+G+  +A++LF+ M    + P+ IT + VL ACSHA
Sbjct: 480 ESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHA 539

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G VE G ++F SM + YGI P  +HY+ M+DL  RAG    A  +I  MP +P A  W A
Sbjct: 540 GLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEA 599

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LL  C++H N DL I AA+++  L PQ+ GTY+LLSNIYA+  +W++VA+VRK MR + +
Sbjct: 600 LLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAV 659

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            KEP CSWIEV  ++H F V D  HP++  + ++L+ L  ++  +GY PDT +VL D+E 
Sbjct: 660 RKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEY 719

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           EQKE ++  HSEKLA+ FG+M L    T+R+ KN+RICGDCH   K  +K+  + I++RD
Sbjct: 720 EQKEHALSTHSEKLAVGFGIMKLPPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRD 779

Query: 626 PIRYHHFQDGNCSCGDYW 643
             R+HHF++G+CSC DYW
Sbjct: 780 RKRFHHFKNGDCSCRDYW 797



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 134/503 (26%), Positives = 225/503 (44%), Gaps = 124/503 (24%)

Query: 70  VRADSVTYAELIKCCLARH--AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           +R  +  YAE ++ C  +   +   A+ VH H+++ GF+P    +N LL M+ K S +  
Sbjct: 7   IRLLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVY 66

Query: 128 AQVLFDQMPERNVVSWTTMISAYC---------------DAKMNDK-------------- 158
           A+ LF+++P  + ++ TT+I+AYC                  M D               
Sbjct: 67  ARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNG 126

Query: 159 ----ALELLIFMLREGVRPNMFTYSAVLRACDSLIIL-------RQLHCGIIKVGFES-D 206
               ALEL   M R+  RP+ FT+++VL A   L++         Q+HC ++K G     
Sbjct: 127 DGHSALELFRAMRRDDFRPDDFTFTSVLSA---LVLFVGNEQQCGQMHCAVVKTGMGCVS 183

Query: 207 VFVRSALIDIYAK----LG----ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD--- 255
             V +AL+ +Y K    LG     + +A  +F+EMP RD + W ++I G+ +N D++   
Sbjct: 184 SSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAR 243

Query: 256 ----------------------------EALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
                                       EAL L ++M+  G   D  T T+++ AC  + 
Sbjct: 244 EVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVG 303

Query: 288 LLELGTQVHVHVLKYDHD------LILNNALLDMYCK----------------------- 318
             ++G Q+H ++LK + +      L ++NAL+ +YCK                       
Sbjct: 304 SFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWN 363

Query: 319 --------CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
                    G +E+A S F  M  K++++ + MISGLAQNG+  E LKLF+ M++   +P
Sbjct: 364 AILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEP 423

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
                 G L ACS  G +E+G     +     G +      + MI +  + G ++ A  +
Sbjct: 424 CDFAFAGALTACSVLGALENG-RQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESV 482

Query: 431 IHEMPYEPDAVTWRALLGACKVH 453
              MP   D V+W +++ A   H
Sbjct: 483 FVTMP-SVDLVSWNSMIAALGQH 504


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1038

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/592 (35%), Positives = 348/592 (58%), Gaps = 6/592 (1%)

Query: 58   AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            A+  + +M   G   + VT+   +  C +    ++ +++H  V+  G      + N L++
Sbjct: 447  ALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVS 506

Query: 118  MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            M+ K   +  ++ +  QMP R+VV+W  +I  Y + +  DKAL     +  EGV  N  T
Sbjct: 507  MYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYIT 566

Query: 178  YSAVLRAC----DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
              +VL AC    D L   + LH  I+  GFESD  V+++LI +YAK G+L +++ +FN +
Sbjct: 567  VVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL 626

Query: 234  PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
              R ++ WN+I+   A +   +E L L  +M+  G + DQ + +  L A   LA+LE G 
Sbjct: 627  DNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQ 686

Query: 294  QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
            Q+H   +K  ++ D  + NA  DMY KCG + + + +    + + + SW+ +IS L ++G
Sbjct: 687  QLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHG 746

Query: 352  YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
            Y +E  + F  M    IKP ++T V +L ACSH G V+ G  ++  + K +G++P  EH 
Sbjct: 747  YFEEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHC 806

Query: 412  SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
             C+IDLLGR+G+L EA   I +MP +P+ + WR+LL +CK+HR+ D    AA+ +  L+P
Sbjct: 807  ICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEP 866

Query: 472  QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
            +D   ++L SN++A + +W++V  VRK M  + I K+  CSW+++  ++ +F + D +HP
Sbjct: 867  EDDSVFVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHP 926

Query: 532  QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
            Q  +I   L+ + + +   GY  DT+  LQD + EQKE ++  HSE+LA+ + LMS  +G
Sbjct: 927  QTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEG 986

Query: 592  KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             T+RI KNLRIC DCH+  K  +++  + IV+RD  R+HHF+ G CSC DYW
Sbjct: 987  STVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFESGLCSCKDYW 1038



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 213/415 (51%), Gaps = 8/415 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAV-EEAKLVHNHVLSGGFEPETFLVNILL 116
            M+    M   G++  S   A L+  C    ++  E   VH  V   G   + ++   +L
Sbjct: 143 GMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAIL 202

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +++  + L+  ++ +F++MP+RNVVSWT+++  Y D    ++ +++   M  EGV  N  
Sbjct: 203 HLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNEN 262

Query: 177 TYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           + S V+ +C  L    + RQ+   +IK G ES + V ++LI ++  +G +  A  +FN++
Sbjct: 263 SMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQI 322

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             RD + WNSI+  +AQN  ++E+  ++  M+R     + +T++++L     +   + G 
Sbjct: 323 SERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGR 382

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
            +H  V+K  +D  + + N LL MY   G  E+A  VF +M  KD+ISW+++++    +G
Sbjct: 383 GIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDG 442

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
            S +AL +  SM  +    NY+T    L AC    F + G      +    G+   +   
Sbjct: 443 RSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKG-RILHGLVVVSGLFDNQIIG 501

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
           + ++ + G+ G +  + +++ +MP   D V W AL+G    + + D A+ A + +
Sbjct: 502 NALVSMYGKIGGMSTSRRVLLQMP-RRDVVAWNALIGGYAENEDPDKALAAFQTL 555



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 194/349 (55%), Gaps = 20/349 (5%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N L+NM+ KF  ++ A+ LFD+MP RN VSW TM+S      +  + +E    M   G++
Sbjct: 97  NTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIK 156

Query: 173 PNMFTYSAVLRACD-SLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
           P+ F  ++++ AC  S  + R   Q+H  + K G  SDV+V +A++ +Y   G +  +  
Sbjct: 157 PSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRK 216

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           VF EMP R++V W S++ G++   + +E +++YK M+  G   ++++++ V+ +C  L  
Sbjct: 217 VFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKD 276

Query: 289 LELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
             LG Q+   V+K   +  L + N+L+ M+   G+++ A  +F+++ ++D ISW+++++ 
Sbjct: 277 ESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAA 336

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG--I 404
            AQNG+ +E+ ++F  M+    + N  T+  +L             +H K  +  +G  +
Sbjct: 337 YAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDV-------DHQKWGRGIHGLVV 389

Query: 405 DPGREHYSCMIDLLGR----AGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
             G +   C+ + L R    AG+ +EA  +  +MP + D ++W +L+ +
Sbjct: 390 KMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTK-DLISWNSLMAS 437



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 192/395 (48%), Gaps = 6/395 (1%)

Query: 64  AMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123
           +M+  GV  +  + + +I  C         + +   V+  G E +  + N L++M     
Sbjct: 251 SMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMG 310

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS---A 180
            ++ A  +F+Q+ ER+ +SW ++++AY      +++  +   M R     N  T S   +
Sbjct: 311 NVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLS 370

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           VL   D     R +H  ++K+GF+S V V + L+ +YA  G    A+ VF +MPT+DL+ 
Sbjct: 371 VLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLIS 430

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VH 298
           WNS++  F  +    +AL +   M R G + +  T TS L AC      + G  +H  V 
Sbjct: 431 WNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVV 490

Query: 299 VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           V     + I+ NAL+ MY K G +  +  V  +M ++DV++W+ +I G A+N    +AL 
Sbjct: 491 VSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALA 550

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
            F++++V  +  NYIT+V VL AC   G + +      +     G +      + +I + 
Sbjct: 551 AFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMY 610

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            + G L  +  L + +      +TW A+L A   H
Sbjct: 611 AKCGDLSSSQDLFNGLD-NRSIITWNAILAANAHH 644



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 131/264 (49%), Gaps = 11/264 (4%)

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           R LH   +K      V   + LI++Y K G ++ A  +F++MP R+ V WN+++ G  + 
Sbjct: 78  RALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVRV 137

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACT-GLALLELGTQVHVHVLKYD--HDLIL 308
               E +  +++M   G       + S++ AC    ++   G QVH  V K     D+ +
Sbjct: 138 GLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYV 197

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
           + A+L +Y   G +  +  VF  M  ++V+SW++++ G +  G  +E + +++SM+   +
Sbjct: 198 STAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGV 257

Query: 369 KPNYITIVGVLFACSHAGFVED---GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
           + N  ++  V+ +C   G ++D   G      + K  G++      + +I + G  G + 
Sbjct: 258 ECNENSMSLVISSC---GLLKDESLGRQIIGQVIK-SGLESKLAVENSLISMFGNMGNVD 313

Query: 426 EAVKLIHEMPYEPDAVTWRALLGA 449
            A  + +++  E D ++W +++ A
Sbjct: 314 YANYIFNQIS-ERDTISWNSIVAA 336


>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/626 (36%), Positives = 349/626 (55%), Gaps = 78/626 (12%)

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER-NVVSWTTMISAY 150
           +AK +H  +L     P   L++ +L+++   +LL ++ ++F+ +P     ++W ++I  Y
Sbjct: 23  QAKQLHAQILRTSL-PSPSLLSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCY 81

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDV 207
               +   +L   I ML  G  P+   + +VL++C  +  LR    +H  II++G   D+
Sbjct: 82  TSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDL 141

Query: 208 FVRSALIDIYAK--------------------------------LGELRNAECVFNEMPT 235
           +  +AL+++Y+K                                LG LR    VF  MP 
Sbjct: 142 YTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRK---VFEMMPK 198

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
           RD+V WN++I G AQN   ++AL + + M  A    D  TL+SVL        L  G ++
Sbjct: 199 RDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEI 258

Query: 296 HVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H + ++  YD D+ + ++L+DMY KC  ++D+  VF  + Q D ISW+++I+G  QNG  
Sbjct: 259 HGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMF 318

Query: 354 QEALKLFESMKVSRIKPN------------------------------------YITIVG 377
            E LK F+ M +++IKPN                                    Y+  + 
Sbjct: 319 DEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRMEGVKPNYVAFMA 378

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           VL ACSHAG V++ W +F SM + Y I PG EHY+ + DLLGR G+L+EA + I +M  E
Sbjct: 379 VLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIE 438

Query: 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497
           P    W  LL AC+VH+N +LA   +KK+  +DPQ+ G Y+LLSNIY+ + +W +  ++R
Sbjct: 439 PTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLR 498

Query: 498 KTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTN 557
             MR +G+ K+P CSWIE+  ++HAF   D SHP  D+IN+ LK L++++   GY  DT 
Sbjct: 499 IAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTT 558

Query: 558 YVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKME 617
            VL D+E EQK   +  HSE+LAI FG++S   G TIR+ KNLR+C DCHT  K  +K+ 
Sbjct: 559 EVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIV 618

Query: 618 NQTIVIRDPIRYHHFQDGNCSCGDYW 643
            + IV+RD  R+HHF+DG CSCGD+W
Sbjct: 619 GREIVVRDNSRFHHFKDGKCSCGDFW 644



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 133/280 (47%), Gaps = 17/280 (6%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+  +  M    +R DS T + ++        + + K +H + +  G++ + F+ + L++
Sbjct: 220 ALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLID 279

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K + ++++  +F  +P+ + +SW ++I+      M D+ L+    ML   ++PN  +
Sbjct: 280 MYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVS 339

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKV-GFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           +S+++ AC  L  L   +QLH  II++ G + +     A++   +  G +  A   FN M
Sbjct: 340 FSSIMPACAHLTTLHLGKQLHGYIIRMEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSM 399

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA-GFAADQ------STLTSVLRACTGL 286
            T+D      II G    + V + L    R++ A  F +D       S  +++L AC   
Sbjct: 400 -TQDY----RIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVH 454

Query: 287 ALLELGTQVHVHVLKYDHDLILNNALL-DMYCKCGSLEDA 325
             +EL  +V   +   D   I    LL ++Y   G  +DA
Sbjct: 455 KNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDA 494


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/659 (36%), Positives = 378/659 (57%), Gaps = 54/659 (8%)

Query: 2   ILKAVSKLKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKA 61
           ++  +S  + T P + A   S+   P V S        +SLL  + R     D  R  + 
Sbjct: 85  LISGLSLRRQTLPDAAAALASIPFPPSVVSF-------TSLLRGYVRHGLLADAIRLFQQ 137

Query: 62  MHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV--NILLNMH 119
           M          + V+Y  L+   L    V EA+ + + +      P+  +V    +L+ +
Sbjct: 138 MP-------ERNHVSYTVLLGGLLDAGRVNEARRLFDEM------PDRDVVAWTAMLSGY 184

Query: 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
            +   + EA+ LFD+MP+RNVVSWT MIS Y      + A +L   M       N  +++
Sbjct: 185 CQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWT 240

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESD------------VFVRSALIDIYAKLGELRNAE 227
           A+L              G I+ G   D            V   +A++  + + G +  A+
Sbjct: 241 AML-------------VGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAK 287

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            VF +M  RD   W+++I  + QN  + EAL+ ++ M   G   +  ++ S+L  C  LA
Sbjct: 288 TVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALA 347

Query: 288 LLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
           +L+ G +VH  +L+  +D D+   +AL+ MY KCG+L+ A  VF     KD++ W++MI+
Sbjct: 348 VLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMIT 407

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           G AQ+G  ++AL +F  M+++ + P+ IT +G L ACS+ G V++G   F SM     I 
Sbjct: 408 GYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIR 467

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
           PG EHYSCM+DLLGR+G ++EA  LI  MP EPDAV W AL+GAC++HRN ++A  AAKK
Sbjct: 468 PGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKK 527

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
           +L L+P + G Y+LLS+IY +  +W++ +++RK + +R + K PGCSWIE +K++H F  
Sbjct: 528 LLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTS 587

Query: 526 ADS-SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFG 584
            D  +HP+   I + L+ L   L+  GY+ D ++VL D++ EQK  S++YHSE+ A+ +G
Sbjct: 588 GDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYG 647

Query: 585 LMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L+ + +G  IR+ KNLR+CGDCH+  KL AK+ ++ I++RD  R+HHF+DG CSC DYW
Sbjct: 648 LLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 136/332 (40%), Gaps = 72/332 (21%)

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR---- 266
           +A I   A+ G +  A   F  MP R    +N+++ G+ +N   D AL L++RM      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 267 ------AGFAADQSTL-------------------TSVLRACTGLALLELGTQVHVHVLK 301
                 +G +  + TL                   TS+LR      LL    ++   + +
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 302 YDH-----------------------------DLILNNALLDMYCKCGSLEDAMSVFSRM 332
            +H                             D++   A+L  YC+ G + +A ++F  M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
            +++V+SW+ MISG AQNG    A KLFE M     + N ++   +L     AG VED  
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMP----ERNEVSWTAMLVGYIQAGHVEDAA 256

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGK-LQEAVKLIHEMPYEPDAVTWRALLGACK 451
             F +M       P     +C   ++G   + + +A K + E   E D  TW A++ A +
Sbjct: 257 ELFNAM-------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYE 309

Query: 452 VHRNTDLAICAAKKIL--NLDPQDPGTYILLS 481
            +     A+   +++L   + P  P    +L+
Sbjct: 310 QNEFLMEALSTFREMLWRGVRPNYPSVISILT 341


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/594 (38%), Positives = 340/594 (57%), Gaps = 42/594 (7%)

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVL--FDQMPERNVVSWTTMISA 149
           + K VH  +L  G +   +++  L+    K ++  +   L  F+Q+   N   +  +I  
Sbjct: 61  QIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPFLYNALIRG 120

Query: 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVG-FES 205
           Y   +   ++ E    M +EGV P  FT++A+ +AC + +   + RQ+H   I VG F  
Sbjct: 121 YLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVGGFGE 180

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRD---------------------------- 237
           D+ V +++ID+Y K G L     VF+EMP RD                            
Sbjct: 181 DLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLP 240

Query: 238 ---LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
              +V W  ++ GFAQN+   EA+  +++M+  G   D+ TL  V+ AC  L   +    
Sbjct: 241 VKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADW 300

Query: 295 VHVHVLKYD----HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
           +     K +    H +++ +AL+DMY KCGS+ DA  VF  M +++V S+S+MI G A +
Sbjct: 301 IRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMH 360

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
           G   +A+KLF+ M  + IKPN +T +GVL ACSHAG VE GW  F+ M+K YGI P  +H
Sbjct: 361 GRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADH 420

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
           Y+CM+DLLGRAG+LQEA +L+  MP EP    W ALLGAC++H++ D+A  AA  +  L+
Sbjct: 421 YTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFELE 480

Query: 471 PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNK-QIHAFNVADSS 529
           P   G YILL+NIYA+  +W++V+ VRK MR RG+ K P  SWIE  K  +H F   D +
Sbjct: 481 PYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGDMT 540

Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
           HP+  +I + L+ L+ +L   GY P  + V  D+  E K   +  HSEKLA+ FGL+S  
Sbjct: 541 HPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKLALAFGLISTI 600

Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            G  IRI KNLRIC DCH+     +++  + I++RD +R+HHF DG CSCG++W
Sbjct: 601 PGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICSCGNFW 654



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 188/435 (43%), Gaps = 68/435 (15%)

Query: 20  QFSLTITP-PVASCNTITRNSSSLLDDFTR-FCYQRDLPRAMKAMHAMQCHGVRADSVTY 77
           + ++ + P P++  N +   +  L +   R +  +  L  + +    M+  GV   S T+
Sbjct: 90  KLNIPVDPYPLSIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTF 149

Query: 78  AELIKCCLARHAVEEAKLVHNH-VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
             L K C A+  V   + +H   +L GGF  +  + N +++M++K   LE  + +FD+MP
Sbjct: 150 TALFKACGAKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMP 209

Query: 137 ERNVVSWTTMISAYCDA----------------------------KMNDKALELLIF--- 165
            R+V+SWT +ISAY  +                              N K  E ++F   
Sbjct: 210 NRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEK 269

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIK-------VGFESDVFVRSALIDIYA 218
           M   GV  +  T   V+ AC  L   +  +   I+        G +  V V SALID+Y+
Sbjct: 270 MQEFGVETDEITLIGVISACAQLGAAK--YADWIRDVAEKSEFGGKHSVVVGSALIDMYS 327

Query: 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278
           K G + +A  VF  M  R++  ++S+I GFA +  V +A+ L+  M +     ++ T   
Sbjct: 328 KCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIG 387

Query: 279 VLRACTGLALLELGTQVHVHVLK-------YDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
           VL AC+   ++E G Q+   + K        DH       ++D+  + G L++A  +   
Sbjct: 388 VLTACSHAGMVEQGWQIFELMEKCYGIKPSADH----YTCMVDLLGRAGRLQEAHELVKT 443

Query: 332 M-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP----NYITIVGVLFACSHAG 386
           M I+     W  ++   A   +    +    +  +  ++P    NYI +  +  +C    
Sbjct: 444 MPIEPHGGVWGALLG--ACRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGR-- 499

Query: 387 FVEDGWNHFKSMKKF 401
                WN   +++K 
Sbjct: 500 -----WNDVSTVRKL 509


>gi|302823459|ref|XP_002993382.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
 gi|300138813|gb|EFJ05567.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
          Length = 655

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/580 (38%), Positives = 355/580 (61%), Gaps = 9/580 (1%)

Query: 70  VRADSVTYAELIKCC--LARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           ++ +  TY  ++K C  L    +E+ K +H H ++ GF  +  + N L++M+ K    + 
Sbjct: 79  LQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSFKF 138

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A  +F++M  +N++S+T+MI AY     + +A EL   ML EG+ P+++ Y+A L  C +
Sbjct: 139 AAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAALAVCPT 198

Query: 188 LIILRQLHCGIIKVG-FESDVFVRS-ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
           +     +H   +K+G  E    V S AL+ +Y + G + +A+ VF+ +  +DL  +N++I
Sbjct: 199 IREGEAIH---VKLGNHERRTPVCSNALVGMYGRFGRIASAKWVFDGIRYKDLASYNNMI 255

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH- 304
             FA+  D  +A++LY  M+      +  T TSVL AC+ L  L  G ++H  V   D  
Sbjct: 256 AVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDACSKLGALTEGKEIHKKVKGGDQP 315

Query: 305 -DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D+  N AL++MY KCGS  +A +VF+    K+V +W++++S  +Q G SQ  L+ ++ M
Sbjct: 316 TDVAYNTALVNMYAKCGSTHEARAVFNDCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQRM 375

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
               + P+ +T   +  ACSH+G  ++G  +F++M++ + I P + HY+CMIDLLGR G+
Sbjct: 376 NCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVPLQPHYTCMIDLLGRVGR 435

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L+EA +L+  MPY PD VTW  LL ACKV+ +  +   A K+I  L+P D G Y+L+ N+
Sbjct: 436 LREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRITELNPPDSGPYLLMGNM 495

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           YA + KW +VAEV+K ++ RG+ K PG S IE  ++IH F   D++HP   +I   L+ +
Sbjct: 496 YAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHEFVCGDTAHPLNQEIRARLQEV 555

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
            ++L   GY PDT  VL D+  E K + + +HSE++A+  GL++   G T+ I KNLRIC
Sbjct: 556 HEQLSHAGYEPDTKEVLVDVNEEVKPELLLFHSERMALGLGLLTSDAGATLHIVKNLRIC 615

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            DCH+F KL +KM ++ +++RD  R+H FQ G+CSCGDYW
Sbjct: 616 PDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCSCGDYW 655



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 182/364 (50%), Gaps = 15/364 (4%)

Query: 95  LVHNHVLSGGFE--PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
           + H  ++    E   ETFL N L+  + +   +++A   F ++ E+N  S+  M+ AY +
Sbjct: 1   MTHERIIDANLEQEKETFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQE 60

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRAC-----DSLIILRQLHCGIIKVGFESDV 207
             ++ KAL+L    + E ++ N  TY  VL++C     D L   +++H   I  GF +D+
Sbjct: 61  NDLHKKALQLFKKSINEELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDL 120

Query: 208 FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
            V+++LI +YAK G  + A  VF +M  ++L+ + S+I  +   +   EA  LYK+M   
Sbjct: 121 VVQNSLIHMYAKCGSFKFAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSE 180

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL-ILNNALLDMYCKCGSLEDAM 326
           G   D     + L  C     +  G  +HV +  ++    + +NAL+ MY + G +  A 
Sbjct: 181 GIMPDIYAYAAALAVC---PTIREGEAIHVKLGNHERRTPVCSNALVGMYGRFGRIASAK 237

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            VF  +  KD+ S++ MI+  A+     +A+ L+  M+   ++PN  T   VL ACS  G
Sbjct: 238 WVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDACSKLG 297

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHY-SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
            + +G    K +K   G  P    Y + ++++  + G   EA  + ++   + +  TW +
Sbjct: 298 ALTEGKEIHKKVKG--GDQPTDVAYNTALVNMYAKCGSTHEARAVFNDCGLK-NVFTWTS 354

Query: 446 LLGA 449
           L+ A
Sbjct: 355 LMSA 358



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 101/225 (44%), Gaps = 13/225 (5%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           F    D  +A+     M+   +  +  T+  ++  C    A+ E K +H  V  GG +P 
Sbjct: 258 FAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDACSKLGALTEGKEIHKKV-KGGDQPT 316

Query: 109 TFLVNI-LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
               N  L+NM+ K     EA+ +F+    +NV +WT+++SAY     +   LE    M 
Sbjct: 317 DVAYNTALVNMYAKCGSTHEARAVFNDCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQRMN 376

Query: 168 REGVRPNMFTYSAVLRAC-------DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKL 220
            EGV P+  T++A+  AC       + L+  R +      V  +      + +ID+  ++
Sbjct: 377 CEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVPLQPHY---TCMIDLLGRV 433

Query: 221 GELRNAECVFNEMP-TRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
           G LR AE +   MP + D+V W  ++       D+      YKR+
Sbjct: 434 GRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRI 478


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/594 (37%), Positives = 355/594 (59%), Gaps = 10/594 (1%)

Query: 59  MKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSG-GFEPETFLVNILLN 117
           ++ +  M   GV+ D  T+  ++  C A  A+EEAK++H   +S  G + +  +   L+N
Sbjct: 203 LRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALIN 262

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++ K   LEEA  +F Q+  +++VSW++MI+A+  +     A++LL+ M  EGVRPN  T
Sbjct: 263 LYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVT 322

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +  VL A  SL      +++H  I++ G+  DV + SAL+ +Y   G +  A  +F    
Sbjct: 323 FVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSR 382

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD+V W+S+I G++QN     AL+L++ M+  G   +  T  S + AC G+  L  GTQ
Sbjct: 383 ERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQ 442

Query: 295 VH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  V  L  D D+ +  AL+++Y KCG LE+A +VF  M +K++++W+++     QNG+
Sbjct: 443 LHERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNGH 502

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
              +LKL   M++  +KP+ I  V +L +C++AG +  G +++  M + +GI P  EH  
Sbjct: 503 GSRSLKLLHGMELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEHCG 562

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           CM+D+LGRAGKL+ A +LI+ M +E  ++ W  LL ACK H +T  A  AA+KI  L+P+
Sbjct: 563 CMVDILGRAGKLEAAEQLINTMKFE-SSLAWMMLLTACKAHNDTARAARAAEKIFQLEPK 621

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           +   Y+LLS+++  +  W+   E R+ M  RG+ +  G S IE+  ++H F  A    P 
Sbjct: 622 NATPYVLLSSVFCAAGSWEAAEETRRRMDGRGVQRLLGRSSIEIGDRVHEFVAASDVLPH 681

Query: 533 --IDKINKHLKHLIQKLVGVGYAPDTNYV-LQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
             + +I   L+ L +++ G GY PD   V L+D+E   KE+++ YHSE LA+  G++S  
Sbjct: 682 HLVGEIFAALEKLGREMQGAGYVPDATAVRLRDVEEGGKENAVPYHSEMLALGLGIISTP 741

Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            G  +RI KNLR+C DCH   K  +K+ ++ I +RD  R+HHF++G CSCGDYW
Sbjct: 742 AGTPLRITKNLRMCSDCHIATKFVSKLVHRRISVRDGRRHHHFENGVCSCGDYW 795



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 132/414 (31%), Positives = 221/414 (53%), Gaps = 12/414 (2%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAE-LIKCCLARHAVEEAKLVHN 98
           +SL+  FT   +      AM     M   GV  D +T+   L+K       ++E K VH+
Sbjct: 85  TSLISAFT---FAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLDEGKRVHS 141

Query: 99  HVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
           H++  G+E +  ++N+++ M+ K   +E+A  +FD + + NV SWT +I+AY       +
Sbjct: 142 HIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCME 201

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGII-KVGFESDVFVRSALI 214
            L LL  M + GV+P+ +T++ VL AC ++  L +   LH   I   G + D  V +ALI
Sbjct: 202 VLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALI 261

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           ++Y K G L  A  VF ++  +D+V W+S+I  FAQ+     A+ L   M   G   +  
Sbjct: 262 NLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNV 321

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           T  +VL A T L   + G ++H  +++  Y  D+ L +AL+ MYC  G +E A S+F   
Sbjct: 322 TFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESS 381

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
            ++DV+SWS+MI+G +QN     AL LF  M+V  ++PN +T V  + AC+  G +  G 
Sbjct: 382 RERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRG- 440

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
                  +  G+D      + +++L G+ G+L+EA  +   M  + + +TW ++
Sbjct: 441 TQLHERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMK-KKNLLTWTSI 493



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 138/490 (28%), Positives = 237/490 (48%), Gaps = 52/490 (10%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF-----EPETFLVNILLNMH 119
           M+   ++A+    A ++  C    A+ E K VH  V+           E+ L NI++ M+
Sbjct: 1   MEAREIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMY 60

Query: 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
           ++    + A  +FD+M ++NVV+WT++ISA+  A     A+ L   ML  GV P+  T++
Sbjct: 61  LRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFT 120

Query: 180 AVLRACD----SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235
           ++L        +L   +++H  I++ G+E D  V + ++++Y K G++  A  VF+ +  
Sbjct: 121 SILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQD 180

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
            ++  W  II  +AQN    E L L  RM +AG   D  T T+VL ACT +  LE    +
Sbjct: 181 PNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKIL 240

Query: 296 HVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           H   +     D D  +  AL+++Y KCG+LE+A  VF ++  KD++SWS+MI+  AQ+G 
Sbjct: 241 HAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQ 300

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACS-----------HAGFVEDG---------- 391
           ++ A++L   M +  ++PN +T V VL A +           HA  V+ G          
Sbjct: 301 AKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSA 360

Query: 392 -------WNHFKSMKKFYGIDPGRE--HYSCMIDLLGRAGKLQEAVKLIHEMP---YEPD 439
                  W   ++ +  +     R+   +S MI    +      A+ L  EM     +P+
Sbjct: 361 LVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPN 420

Query: 440 AVTWRALLGAC----KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAE 495
           +VT+ + + AC     + R T L      + L LD   P    L+ N+Y    + +E   
Sbjct: 421 SVTFVSAIDACAGVGALRRGTQLH--ERVRCLGLDKDVPVATALV-NLYGKCGRLEEAEA 477

Query: 496 VRKTMRARGI 505
           V   M+ + +
Sbjct: 478 VFLGMKKKNL 487



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 161/336 (47%), Gaps = 16/336 (4%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           F        A++ +  M   GVR ++VT+  +++   +  A +  K +H  ++  G+  +
Sbjct: 295 FAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDD 354

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             L + L+ M+  +  +E A+ +F+   ER+VVSW++MI+ Y   +   +AL L   M  
Sbjct: 355 VCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEV 414

Query: 169 EGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           +GV+PN  T+ + + AC  +  LR   QLH  +  +G + DV V +AL+++Y K G L  
Sbjct: 415 DGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLGLDKDVPVATALVNLYGKCGRLEE 474

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT- 284
           AE VF  M  ++L+ W SI   + QN     +L L   M+  G   D     ++L +C  
Sbjct: 475 AEAVFLGMKKKNLLTWTSIAMAYGQNGHGSRSLKLLHGMELQGMKPDGIVFVAILVSCNY 534

Query: 285 ------GLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
                 GL    L TQ        +H       ++D+  + G LE A  + + M  +  +
Sbjct: 535 AGQMSKGLHYYNLMTQDFGIAPAVEH----CGCMVDILGRAGKLEAAEQLINTMKFESSL 590

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           +W  +++    +  +  A +  E  K+ +++P   T
Sbjct: 591 AWMMLLTACKAHNDTARAARAAE--KIFQLEPKNAT 624


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/566 (40%), Positives = 335/566 (59%), Gaps = 17/566 (3%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVN-------ILLNMHVKFSLLEEAQVLFDQMPERNVVS 142
           V + K +  H++      +TFL +       + L+ HV +     A  +F      N+  
Sbjct: 20  VGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAY-----AHRIFSCTHHPNLFM 74

Query: 143 WTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGII 199
           W T+I  Y  +     A+ L   M   G+ PN +T+  VL+AC  L+ L   ++LH  I+
Sbjct: 75  WNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIV 134

Query: 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN 259
           KVG + +  + + LI +YA  G +  A  +F+EMP  D   W++++ G+AQN    EAL 
Sbjct: 135 KVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALK 194

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYC 317
           L++ M+    ++D  TL SV+  C  L  L+LG  VH ++ K     D++L  AL+ MY 
Sbjct: 195 LFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYS 254

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           KCGSL++A+ VF  M ++DV +WSTMI+G A +G+ ++AL+LF++MK S+  PN +T   
Sbjct: 255 KCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTS 314

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           VL ACSH+G VE G   F++M   Y I P  +HY CM+DL  RAG +  A K I  MP E
Sbjct: 315 VLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIE 374

Query: 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497
           P+ V WR LLGACK H   DL    ++KIL LDP  P  Y+L+SN+YA+  +W  V +VR
Sbjct: 375 PNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVCQVR 434

Query: 498 KTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTN 557
             M+ +   K+ G S IE+N  +H F + D SHP+ +KI   L  + +KL  VG+   T 
Sbjct: 435 SLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQVGHVNSTV 494

Query: 558 YVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKME 617
            VL D++ E+KE ++  HSE+LAI +GL+    G  IRI KNLR+C DCH   KL +++ 
Sbjct: 495 DVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRVCRDCHEVIKLISEVY 554

Query: 618 NQTIVIRDPIRYHHFQDGNCSCGDYW 643
           N+ I++RD +R+HHF++  CSC DYW
Sbjct: 555 NREIIVRDRVRFHHFRERGCSCNDYW 580



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 183/371 (49%), Gaps = 23/371 (6%)

Query: 19  RQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYA 78
           R FS T  P +   NTI R  S      T     RD+           C G+  +S T+ 
Sbjct: 62  RIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDM---------FLC-GISPNSYTFG 111

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
            ++K C     + E + +H+ ++  G + ET LVN L+ ++     ++ A V+FD+MPE 
Sbjct: 112 FVLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEP 171

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLH 195
           +  SW+TM+S Y       +AL+L   M  E V  + FT ++V+  C  L  L   + +H
Sbjct: 172 DSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVH 231

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
             + K G + DV + +AL+ +Y+K G L NA  VF  M  RD+  W+++I G+A +   +
Sbjct: 232 SYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGE 291

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV---LKYDHDLILNNAL 312
           +AL L+  MKR+    +  T TSVL AC+   L+E G Q+   +    K    +     +
Sbjct: 292 KALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCM 351

Query: 313 LDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP- 370
           +D++C+ G +  A      M I+ +V+ W T++     +GY    L    S K+ ++ P 
Sbjct: 352 VDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKD--LGEHISRKILKLDPS 409

Query: 371 ---NYITIVGV 378
              NY+ +  V
Sbjct: 410 SPENYVLVSNV 420


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/619 (37%), Positives = 353/619 (57%), Gaps = 36/619 (5%)

Query: 50  CYQRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCC-----------LARHAVEEAKLVH 97
           C+Q   P+ +++  +AM   G +   VT   ++  C           +   A+E      
Sbjct: 194 CWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGSATAFVLEQAMEVVSATR 253

Query: 98  NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND 157
           ++VL             LL  + + + L  A+  FD +   +VVSW  M +AY       
Sbjct: 254 DNVLG----------TTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPR 303

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRACDSL------IILRQLHCGIIKVGFESDVFVRS 211
           +AL L   ML EGVRP++ T+   L AC +        I +++   + + G E D  V +
Sbjct: 304 EALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVAN 363

Query: 212 ALIDIYAKLGELRNAECVFNEM-PTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
           A +++YAK G L +A  VF  + PTR D + WNS++  +  +    EA  L++ M+    
Sbjct: 364 ATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKL 423

Query: 270 A-ADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAM 326
              ++ T  +VL A T    +  G ++H  V+   ++ D ++ NALL+MY KCGSL+DA 
Sbjct: 424 VKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQ 483

Query: 327 SVF--SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           ++F  S   Q+DVI+W+++++G AQ G ++ ALKLF +M+   ++PN+IT +  L AC+H
Sbjct: 484 AIFDKSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNH 543

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
            G +E G      M   +GI P  +H+SC++DLLGR G+L EA KL+ E   + D +TW 
Sbjct: 544 GGKLEQGCELLSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLL-ERTSQADVITWM 602

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
           ALL ACK  +  +     A++I+ LDP+   +YI+L+++YA + +W+E A +RKTM  +G
Sbjct: 603 ALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKG 662

Query: 505 ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLE 564
           I  +PGCS +EVN+++H+F+  D SHP+ ++I   L+ L   +   GY  DT  VL D+ 
Sbjct: 663 IRADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVS 722

Query: 565 GEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIR 624
            E KE  +  HSEKLAI FGLMS   G  +R+ KNLR+C DCHT  KL +K+  + I++R
Sbjct: 723 QEHKERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMR 782

Query: 625 DPIRYHHFQDGNCSCGDYW 643
           D  RYHHF  G CSCGDYW
Sbjct: 783 DSSRYHHFTSGTCSCGDYW 801



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/406 (28%), Positives = 194/406 (47%), Gaps = 25/406 (6%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           VR +      L+  C     +   + +H+ +    FE  + L N L++M+ K   L +A+
Sbjct: 3   VRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAK 62

Query: 130 VLFDQMP---ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV-RPNMFTYSAVLRAC 185
             FD++P   +R+VV+W  MISA+       +AL+L   M  +G   PN  T+ +VL +C
Sbjct: 63  QAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSC 122

Query: 186 D-----SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF----NEMPTR 236
                 SL  +R +H  I+  G E + FVR+AL+D Y KLG L +A  VF    +E P+ 
Sbjct: 123 VEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPST 182

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT--- 293
            LV  +++I    QN    E+L L+  M   G      TL SVL AC+   +L +G+   
Sbjct: 183 SLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACS---MLPVGSATA 239

Query: 294 ---QVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
              +  + V+    D +L   LL  Y +   L  A + F  +   DV+SW+ M +   Q+
Sbjct: 240 FVLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQH 299

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSH--AGFVEDGWNHFKSMKKFYGIDPGR 408
              +EAL LFE M +  ++P+  T +  L AC+              +S+ +  G++   
Sbjct: 300 HRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDT 359

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLGACKVH 453
              +  +++  + G L +A  +   + P   D +TW ++L A   H
Sbjct: 360 AVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHH 405



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 162/332 (48%), Gaps = 21/332 (6%)

Query: 171 VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
           VRPN     A++ AC  L  L   R++H  I    FE +  + +ALI +Y+K G L +A+
Sbjct: 3   VRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAK 62

Query: 228 CVFNEMP---TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS-TLTSVLRAC 283
             F+ +P    RD+V WN++I  F +N    EAL L++ M   G     S T  SVL +C
Sbjct: 63  QAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSC 122

Query: 284 --TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD--- 336
              GL  LE    +H  ++    + +  +  AL+D Y K GSL+DA  VF R   ++   
Sbjct: 123 VEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPST 182

Query: 337 -VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
            +++ S MIS   QNG+ QE+L+LF +M +   KP+ +T+V VL ACS           F
Sbjct: 183 SLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSM--LPVGSATAF 240

Query: 396 KSMKKFYGIDPGREHY--SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
              +    +   R++   + ++    R+  L  A +   +    PD V+W A+  A   H
Sbjct: 241 VLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRA-RATFDAIQSPDVVSWNAMAAAYLQH 299

Query: 454 RNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
                A+   +++L L+   P     ++ + A
Sbjct: 300 HRPREALVLFERML-LEGVRPSVATFITALTA 330


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/579 (38%), Positives = 345/579 (59%), Gaps = 12/579 (2%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V     +++ +++ C      +  +  H  ++  GFE +  L   LL+ + K   L+ A+
Sbjct: 6   VLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAK 65

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML-REGVRPN-MFTYSAVLRACDS 187
            +F  MP R+VV+   MISA       ++A  L   M  R     N M T    L   +S
Sbjct: 66  RVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDINS 125

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT-RDLVVWNSIIG 246
             ++    C  +K     DV   +A+ID Y K  +L  A+ +F  M + R+ V WN++I 
Sbjct: 126 ARLM--FDCNPVK-----DVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMIS 178

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDH 304
            + Q  +   A++++++M+       + T+ S+L AC  L  L++G  +H  +   +   
Sbjct: 179 AYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKI 238

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           D++L NAL+DMYCKCG+LE A+ VF  + +K++  W+++I GL  NG  +EA+  F  M+
Sbjct: 239 DVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVME 298

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
              IKP+ +T VG+L  CSH+G +  G  +F  M   YG++PG EHY CM+DLLGRAG L
Sbjct: 299 KEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYL 358

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484
           +EA++LI  MP +P+++   +LL AC++H++T L     +++L LDP D G Y+ LSN+Y
Sbjct: 359 KEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLY 418

Query: 485 ANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLI 544
           A+  +WD+V   RK M  RG+ K PGCS IEVN  +H F   D+SHPQ  +IN  L  + 
Sbjct: 419 ASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIA 478

Query: 545 QKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICG 604
           ++L G G+ P+T  VL D+E E+KE +I+YHSE++A+ FGLMS   GKTIR+ KNLR C 
Sbjct: 479 KELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCS 538

Query: 605 DCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           DCH+  KL +    + I++RD  R+HHF++G+CSC DYW
Sbjct: 539 DCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 159/306 (51%), Gaps = 22/306 (7%)

Query: 166 MLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           MLR  V P+  ++S +LR+C       +    HC I+K+GFE D+ +++ L+D YAK+G+
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           L+ A+ VF  MP RD+V  N++I   +++  V+EA NL+  M      +  S +T   + 
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCK- 119

Query: 283 CTGLALLELGTQVHVHVLKYD----HDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDV 337
                   LG  ++   L +D     D++  NA++D YCK   L  A  +F  M   ++ 
Sbjct: 120 --------LG-DINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNS 170

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFK 396
           ++W+TMIS   Q G    A+ +F+ M+   +KP  +T+V +L AC+H G ++ G W H  
Sbjct: 171 VTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGY 230

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
              K   ID    +   +ID+  + G L+ A+ + H +    +   W +++    ++   
Sbjct: 231 IRTKRLKIDVVLGN--ALIDMYCKCGALEAAIDVFHGLS-RKNIFCWNSIIVGLGMNGRG 287

Query: 457 DLAICA 462
           + AI A
Sbjct: 288 EEAIAA 293



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 121/307 (39%), Gaps = 39/307 (12%)

Query: 36  TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL 95
            RNS +     + +    +   A+     MQ   V+   VT   L+  C    A++  + 
Sbjct: 167 ARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEW 226

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H ++ +   + +  L N L++M+ K   LE A  +F  +  +N+  W ++I        
Sbjct: 227 IHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGR 286

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL----RQLHCGIIKVGFESDVFVRS 211
            ++A+   I M +EG++P+  T+  +L  C    +L    R     +   G E  V    
Sbjct: 287 GEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYG 346

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
            ++D+  + G L+ A  +   MP +     NS++                          
Sbjct: 347 CMVDLLGRAGYLKEALELIRAMPMKP----NSMV-------------------------- 376

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALL-DMYCKCGSLEDAMSVFS 330
               L S+LRAC      +LG QV   +L+ D     N   L ++Y      +D  +   
Sbjct: 377 ----LGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRK 432

Query: 331 RMIQKDV 337
            MI++ V
Sbjct: 433 LMIKRGV 439


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/607 (37%), Positives = 355/607 (58%), Gaps = 40/607 (6%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y   ++ C     +  AK +H H++  G      L N L+N++ K      A  +FD+MP
Sbjct: 6   YLHQLQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMP 65

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSLIIL---R 192
            R+ ++W ++++A   A ++ K L +   +     +RP+ F +SA+++AC +L  +   R
Sbjct: 66  HRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGR 125

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE-------------------- 232
           Q+HC  I   + +D  V+S+L+D+YAK G L +A+ VF+                     
Sbjct: 126 QVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSG 185

Query: 233 -----------MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF-AADQSTLTSVL 280
                      +P ++L  W ++I GF Q+    EA +++  M+R      D   L+S++
Sbjct: 186 RKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIV 245

Query: 281 RACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
            AC  LA    G QVH  V  L +D  + ++NAL+DMY KC  +  A  +FSRM  +DV+
Sbjct: 246 GACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVV 305

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
           SW+++I G+AQ+G +++AL L++ M    +KPN +T VG+++ACSH GFVE G   F+SM
Sbjct: 306 SWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSM 365

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
            K YGI P  +HY+C++DLLGR+G L EA  LIH MP+ PD  TW ALL ACK      +
Sbjct: 366 TKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQM 425

Query: 459 AICAAKKIL-NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVN 517
            I  A  ++ +   +DP TYILLSNIYA++  W +V+E R+ +    + K+PG S +EV 
Sbjct: 426 GIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVR 485

Query: 518 KQIHAFNVADSSHPQIDKINKHLKHLIQKL-VGVGYAPDTNYVLQDLEGEQKEDSIQYHS 576
           K+   F   ++SHP  + I + LK L +++ +  GY PDT+++L D++ ++KE  + +HS
Sbjct: 486 KETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHS 545

Query: 577 EKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGN 636
           E+ A+ +GL+    G  IRI KNLR+CGDCH   K  +++  + I++RD  RYHHF+ G 
Sbjct: 546 ERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGK 605

Query: 637 CSCGDYW 643
           CSC D+W
Sbjct: 606 CSCNDFW 612



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 181/381 (47%), Gaps = 46/381 (12%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           +R D   ++ L+K C    +++  + VH H +   +  +  + + L++M+ K  LL  A+
Sbjct: 101 LRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAK 160

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELL-------------------------- 163
            +FD +  +N +SWT M+S Y  +   ++ALEL                           
Sbjct: 161 AVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLE 220

Query: 164 ---IF--MLREGVRP-NMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALI 214
              +F  M RE V   +    S+++ AC +L   I  RQ+H  +I +GF+S VF+ +ALI
Sbjct: 221 AFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALI 280

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           D+YAK  ++  A+ +F+ M  RD+V W S+I G AQ+   ++AL LY  M   G   ++ 
Sbjct: 281 DMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEV 340

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
           T   ++ AC+ +  +E G ++   + K       L     LLD+  + G L++A ++   
Sbjct: 341 TFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHT 400

Query: 332 M-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK----PNYITIVGVLFACSHAG 386
           M    D  +W+ ++S   + G  Q  +++ + + VS  K      YI +  +  + S  G
Sbjct: 401 MPFPPDEPTWAALLSACKRQGRGQMGIRIADHL-VSSFKLKDPSTYILLSNIYASASLWG 459

Query: 387 FVEDGWNHFKSMKKFYGIDPG 407
            V +       M+     DPG
Sbjct: 460 KVSEARRKLGEME--VRKDPG 478


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/558 (39%), Positives = 336/558 (60%), Gaps = 17/558 (3%)

Query: 102 SGGFEPETFLVNILLNMHVKFSL-----LEEAQVLFDQMPERNVVSW-TTMISAYCDAKM 155
            GG +     V  LL +  +        L  A+ +FD++P    V W  T++  Y     
Sbjct: 55  GGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGW 114

Query: 156 N----DKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVF 208
                ++A  + + M+ EGV P+ +T+ ++L+AC S       RQ H   +K G     +
Sbjct: 115 GGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEY 174

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           V   LI++YA+ G++R A  +F+ M    +V +N++I    ++S   EAL L++ M+  G
Sbjct: 175 VAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKG 234

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAM 326
                 TL SVL AC  L  LELG  +H ++  ++ D  + +N AL+DMY KCGSLEDA+
Sbjct: 235 LKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAI 294

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            VF  M  +D  +WS M+   A +GY +EA+ +FE MK   +KP+ +T +GVL+ACSH+G
Sbjct: 295 GVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSG 354

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            V +G  +F SM++ YGI  G +HY C+ DLL R+G+L+ A K I E+P +P A+ WR L
Sbjct: 355 MVSEGLQYFDSMRE-YGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTL 413

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           L AC  H + D+     ++IL LD    G Y++ SN+ AN+ +W+E+  VRK M  +G+ 
Sbjct: 414 LSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVV 473

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQ-DLEG 565
           K PGCS IE++  +H F   D SHP   +  + +  +I++L  VGY P+T++V   ++  
Sbjct: 474 KVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGE 533

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           E+K  S++YHSEKLAI FGL++   G T+RI KNLR+C DCH+ AKL + + N+ I++RD
Sbjct: 534 EEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRD 593

Query: 626 PIRYHHFQDGNCSCGDYW 643
             R+HHF+DG CSCGDYW
Sbjct: 594 LNRFHHFEDGVCSCGDYW 611



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 153/305 (50%), Gaps = 6/305 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   GV  D+ T+  L+K C +  A EE +  H   +  G     ++   L+NM+ +   
Sbjct: 129 MMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGD 188

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +  A+V+FD+M    VVS+  MI+A   + +  +AL L   M  +G++P   T  +VL A
Sbjct: 189 VRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSA 248

Query: 185 C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C    +L + R +H  I K+  +S V V +ALID+YAK G L +A  VF +M +RD   W
Sbjct: 249 CALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAW 308

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           + ++  +A +    EA+++++ MK+ G   D  T   VL AC+   ++  G Q    + +
Sbjct: 309 SVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMRE 368

Query: 302 YD--HDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALK 358
           Y     +     + D+  + G LE A      + I+   I W T++S  A +G      +
Sbjct: 369 YGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKR 428

Query: 359 LFESM 363
           +FE +
Sbjct: 429 VFERI 433



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 163/355 (45%), Gaps = 30/355 (8%)

Query: 180 AVLRACDSLIILRQLHCGIIKV--GFESDVFVRSALIDIYAKLG-----ELRNAECVFNE 232
           A L  C SL  L QLH   +K   G ++     + L+ +  + G      L  A  VF+ 
Sbjct: 33  AYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDR 92

Query: 233 MPTRDLVVW-NSIIGGFAQNSD----VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
           +P    VVW N+++ G+A+        +EA  ++ RM   G A D  T  S+L+AC    
Sbjct: 93  IPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKACASAR 152

Query: 288 LLELGTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
             E G Q H   +K    +H+ +    L++MY +CG +  A  +F RM  + V+S++ MI
Sbjct: 153 AGEEGRQAHGVAVKAGAAEHEYVAPT-LINMYAECGDVRAARVMFDRMDGECVVSYNAMI 211

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNH--FKSMKKF 401
           +   ++    EAL LF  M+   +KP  +T++ VL AC+  G +E G W H   + M+  
Sbjct: 212 TASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMR-- 269

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
             +D   +  + +ID+  + G L++A+ +  +M    D   W  ++ A   H     AI 
Sbjct: 270 --LDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESR-DKQAWSVMMVAYANHGYGREAIS 326

Query: 462 AAKKILNLDPQDPGTYILLSNIYANSQKW--DEVAEVRKTMRARGIT---KEPGC 511
             ++ +      P     L  +YA S      E  +   +MR  GI    K  GC
Sbjct: 327 MFEE-MKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGC 380


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/657 (35%), Positives = 361/657 (54%), Gaps = 71/657 (10%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+K    M   G+     T   ++  C A  A    + VH+ V+  G      + N +LN
Sbjct: 146 AIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLN 205

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMIS----------------------------- 148
           M+ K    E A+ +F++MPER+V SW  M+S                             
Sbjct: 206 MYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAV 265

Query: 149 --AYCDAKMNDKALELLIFMLR-EGVRPNMFTYSAVLRACDSLIIL---RQLHC------ 196
              Y    +N KAL     ML    + P+ FT ++VL AC +L ++   +Q+H       
Sbjct: 266 IAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSR 325

Query: 197 -------------------------GIIKVGFESDVFVRS--ALIDIYAKLGELRNAECV 229
                                    G+++    +D+ V S  AL++ Y KLG++++A  +
Sbjct: 326 MPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREM 385

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F+ M  RD+V W ++I G+ QN   DEA+ L++ M R+G   +  T+ +VL  C  LA L
Sbjct: 386 FDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACL 445

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
           E G Q+H   ++   +    ++N+++ MY + GSL  A  VF R+  +K+ ++W++MI  
Sbjct: 446 EYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVA 505

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
           LAQ+G  ++A+ LFE M    +KP+ IT VGVL AC+H GFV++G  +F+ ++  +GI P
Sbjct: 506 LAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVP 565

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
              HY+CM+DLL RAG   EA + I +MP EPDA+ W +LL AC+VH+N DLA  AA+K+
Sbjct: 566 EMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKL 625

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
           L++DP + G Y  LSN+Y+   +W++ A++ K  + + + KE G SW  +  ++H F   
Sbjct: 626 LSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGAD 685

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D  HPQ D + +    +   +   G+ PD   VL D++ E KE+ +  HSEKLAI FGL+
Sbjct: 686 DVLHPQRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLV 745

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           S  +  T+RI KNLR+C DCHT  K  +K+ ++ I++RD  R+HHF+DG CSC DYW
Sbjct: 746 STPEKTTLRIMKNLRVCNDCHTAIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 130/484 (26%), Positives = 224/484 (46%), Gaps = 87/484 (17%)

Query: 50  CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHA---------VEEAKLVHNHV 100
           C     P A +A+HA     V+A  +  A L    L+ +A           EA+ + + +
Sbjct: 33  CQTAANPGAGRAIHA---RAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDEI 89

Query: 101 LSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKAL 160
            +   +   F  N LL+++ K   L +A+ +F +MPER+ VSWT M+          +A+
Sbjct: 90  PAA--QRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAI 147

Query: 161 ELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIY 217
           ++ + M+ +G+ P  FT + VL +C   ++  + R++H  ++K+G  S V V ++++++Y
Sbjct: 148 KMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMY 207

Query: 218 AKLGELRNAECVFNEMPTRD-------------------------------LVVWNSIIG 246
            K G+   A  VF  MP R                                +V WN++I 
Sbjct: 208 GKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIA 267

Query: 247 GFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD 305
           G+ QN    +AL  + RM   +  A D+ T+TSVL AC  L ++ +G QVH ++L+    
Sbjct: 268 GYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMP 327

Query: 306 LI--LNNALLDMYCKCGSLEDAMSV---------------------------------FS 330
            I  + NAL+ MY K GS+E+A  V                                 F 
Sbjct: 328 YIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFD 387

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            M  +DV++W+ MI G  QNG++ EA++LF  M  S  +PN  T+  VL  C+    +E 
Sbjct: 388 VMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEY 447

Query: 391 GWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           G   H K+++     +      + ++ +  R+G L  A ++   + +  + VTW +++ A
Sbjct: 448 GKQIHCKAIRSLQ--EQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVA 505

Query: 450 CKVH 453
              H
Sbjct: 506 LAQH 509


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/604 (36%), Positives = 344/604 (56%), Gaps = 35/604 (5%)

Query: 75  VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ 134
           VT   ++K   +   V   K +H  V+  GFE    + + LL+M+ K   + +A+ +F  
Sbjct: 137 VTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYG 196

Query: 135 MPERNVV------------------------------SWTTMISAYCDAKMNDKALELLI 164
           + +RN V                              SW+ MI       M  +A+E   
Sbjct: 197 LDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFR 256

Query: 165 FMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
            M  EG++ + + + +VL AC  L  +   RQ+H  II+   +  ++V SALID+Y K  
Sbjct: 257 EMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCK 316

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
            L  A+ VF+ M  +++V W +++ G+ Q     EA+ ++  M+R+G   D  TL   + 
Sbjct: 317 CLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAIS 376

Query: 282 ACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
           AC  ++ LE G+Q H   +     H + ++N+L+ +Y KCG ++D+  +F+ M  +D +S
Sbjct: 377 ACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVS 436

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           W+ M+S  AQ G + EA++LF+ M    +KP+ +T+ GV+ ACS AG VE G  +F+ M 
Sbjct: 437 WTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMI 496

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
             YGI P   HYSCMIDL  R+G+++EA+  I+ MP+ PDA+ W  LL AC+   N ++ 
Sbjct: 497 NEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIG 556

Query: 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQ 519
             AA+ ++ LDP  P  Y LLS+IYA+  KWD VA++R+ M+ + + KEPG SWI+   +
Sbjct: 557 KWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGK 616

Query: 520 IHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKL 579
           +H+F+  D S P  D+I   L+ L QK++  GY PDT++V  D+E   K   +  HSE+L
Sbjct: 617 LHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDTSFVHHDVEEAVKIKMLNCHSERL 676

Query: 580 AIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
           AI FGL+ +  G  IR+ KNLR+C DCH   K  + +  + I++RD +R+H F+DG CSC
Sbjct: 677 AIAFGLIFVPSGLPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSC 736

Query: 640 GDYW 643
           GD+W
Sbjct: 737 GDFW 740



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/447 (28%), Positives = 217/447 (48%), Gaps = 83/447 (18%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL------------------------- 111
           Y+  IK C+   A    K++H +++     PETFL                         
Sbjct: 6   YSAQIKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIP 65

Query: 112 ------VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
                  N LL  + K   L E +  F+++P+R+ V+W  +I  Y  + +   A++    
Sbjct: 66  QPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNT 125

Query: 166 MLREG----VRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
           M+++      R  + T   +  +   + + +Q+H  +IK+GFES + V S L+D+Y+K+G
Sbjct: 126 MMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVG 185

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIG------------------------------GFAQN 251
            + +A+ VF  +  R+ V++N+++G                              G AQN
Sbjct: 186 CISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQN 245

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHDLIL 308
               EA+  ++ MK  G   DQ    SVL AC GL  +  G Q+H  +++    DH + +
Sbjct: 246 GMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDH-IYV 304

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            +AL+DMYCKC  L  A +VF RM QK+V+SW+ M+ G  Q G + EA+K+F  M+ S I
Sbjct: 305 GSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGI 364

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG--IDPGREHY----SCMIDLLGRAG 422
            P++ T+   + AC++   +E+G        +F+G  I  G  HY    + ++ L G+ G
Sbjct: 365 DPDHYTLGQAISACANISSLEEG-------SQFHGKAITAGLIHYITVSNSLVTLYGKCG 417

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGA 449
            + ++ +L +EM    D V+W A++ A
Sbjct: 418 DIDDSTRLFNEMNVR-DEVSWTAMVSA 443



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 159/302 (52%), Gaps = 9/302 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+  G++ D   +  ++  C    A+ + + +H  ++    +   ++ + L++
Sbjct: 251 AIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALID 310

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L  A+ +FD+M ++NVVSWT M+  Y       +A+++ + M R G+ P+ +T
Sbjct: 311 MYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYT 370

Query: 178 YSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
               + AC ++  L    Q H   I  G    + V ++L+ +Y K G++ ++  +FNEM 
Sbjct: 371 LGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMN 430

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            RD V W +++  +AQ     EA+ L+ +M + G   D  TLT V+ AC+   L+E G Q
Sbjct: 431 VRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKG-Q 489

Query: 295 VHVHVLKYDHDLILNNA----LLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQ 349
            +  ++  ++ ++ +N     ++D++ + G +E+AM   + M  + D I W+T++S    
Sbjct: 490 RYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRN 549

Query: 350 NG 351
            G
Sbjct: 550 KG 551


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/531 (41%), Positives = 323/531 (60%), Gaps = 12/531 (2%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP---NMFTYSAV 181
           L  A+ LFD+MP+R+  +W+ ++S Y      + AL L   M  E       N FT S+ 
Sbjct: 111 LPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSA 170

Query: 182 LRACDSLI---ILRQLHCGIIKVGFES---DVFVRSALIDIYAKLGELRNAECVFNEMPT 235
           L A  +       R+LHC +++ G ++   D  + SAL D+YAK G + +A  VF+ MP 
Sbjct: 171 LAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPV 230

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA-GFAADQSTLTSVLRACTGLALLELGTQ 294
           RD V W +++  +       E   L+  M R  G   ++ T   VLRAC   A+   G Q
Sbjct: 231 RDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQ 290

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           VH  + K          +ALL MY KCG +  A+ VF  M + D++SW+ +ISG AQNG 
Sbjct: 291 VHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQ 350

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            +EAL+ F+    S IKP+++T VGVL AC+HAG V+ G   F S+K+ Y I+   +HY+
Sbjct: 351 PEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYA 410

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           C+IDLL R+G+ + A K+I  M  +P+   W +LLG C++H+N  LA  AA+ +  ++P+
Sbjct: 411 CVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPE 470

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           +P TY+ L+NIYA+   +DEV +VR+ M ++GITK P  SWIEV +++H F V D SHP+
Sbjct: 471 NPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHPK 530

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
            D+I   LK L  K+V  GY  D  +VL D+E EQKE  I YHSE+LA+ FG+++  +G 
Sbjct: 531 ADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIATPEGS 590

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            I++ KNLRICGDCH   KL +++  + I++RD  R+HHF+DG CSC DYW
Sbjct: 591 PIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW 641



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 138/266 (51%), Gaps = 13/266 (4%)

Query: 93  AKLVHNHVLSGGFEP---ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
            + +H HV+  G +    +  L + L +M+ K   +++A+ +FD+MP R+ VSWT M+  
Sbjct: 183 GRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVER 242

Query: 150 YCDAKMNDKALELLIFMLR-EGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFES 205
           Y D     +   L + MLR  GVRPN FTY+ VLRAC    +    RQ+H  + K G   
Sbjct: 243 YFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGD 302

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
             F  SAL+ +Y+K G++ +A  VF  M   DLV W ++I G+AQN   +EAL  +    
Sbjct: 303 SCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFL 362

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK----YDHDLILNNALLDMYCKCGS 321
           R+G   D  T   VL AC    L++ G ++  H +K     +H       ++D+  + G 
Sbjct: 363 RSGIKPDHVTFVGVLSACAHAGLVDKGLEI-FHSIKEQYCIEHTADHYACVIDLLSRSGQ 421

Query: 322 LEDAMSVFSRM-IQKDVISWSTMISG 346
            E A  +   M ++ +   W++++ G
Sbjct: 422 FERAEKMIGNMAVKPNKFLWASLLGG 447



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 23/200 (11%)

Query: 62  MHAMQCHGVRADSVTYAELIKCCLARHAVEE-AKLVHNHVLSGGFEPETFLVNILLNMHV 120
           +H ++  GVR +  TYA +++ C A+ AVE   + VH  +   G     F  + LL M+ 
Sbjct: 257 LHMLRTRGVRPNEFTYAGVLRAC-AQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYS 315

Query: 121 KFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSA 180
           K   +  A  +F+ M + ++VSWT +IS Y      ++AL      LR G++P+  T+  
Sbjct: 316 KCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVG 375

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVR------------SALIDIYAKLGELRNAEC 228
           VL AC         H G++  G E    ++            + +ID+ ++ G+   AE 
Sbjct: 376 VLSAC--------AHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEK 427

Query: 229 VFNEMPTR-DLVVWNSIIGG 247
           +   M  + +  +W S++GG
Sbjct: 428 MIGNMAVKPNKFLWASLLGG 447


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/580 (36%), Positives = 352/580 (60%), Gaps = 9/580 (1%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G  A + T++ L+        + +AK V + ++         + N ++   ++  ++EEA
Sbjct: 179 GFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVV----KNVVMYNTMITGLLRCKMVEEA 234

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +F+ M +R+ ++WTTM++      +  +AL++   M  EGV  + +T+ ++L AC +L
Sbjct: 235 RGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGAL 294

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
                 +Q+H   I+  ++ ++FV SAL+D+Y+K   +R AE VF  M  ++++ W ++I
Sbjct: 295 AASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMI 354

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYD 303
            G+ QN   +EA+ ++  M+  G   +  TL SV+ +C  LA LE G Q H   L     
Sbjct: 355 VGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLR 414

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
             + +++AL+ +Y KCGS+EDA  +F  M   D +S++ ++SG AQ G ++E + LFE M
Sbjct: 415 PYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKM 474

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
            +  +KPN +T +GVL ACS +G VE G ++F SM++ +GI    +HY+CMIDL  R+G+
Sbjct: 475 LLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGR 534

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L+EA + I +MP  PDA+ W  LL AC++  + ++   AA+ +L  DPQ+P +Y+LL ++
Sbjct: 535 LKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSM 594

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           +A+  +W EVA +R+ MR R + KEPGCSWI+   ++H F+  D SHP    I + L+ L
Sbjct: 595 HASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKLQWL 654

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
             K+   GY PD + VL D+   +K   +  HSEKLAI FGL+ + +   IR+ KNLR+C
Sbjct: 655 NSKMAEEGYKPDVSSVLHDVADAEKVHMLSNHSEKLAIAFGLIFVPEEMPIRVVKNLRVC 714

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            DCH   K  +K+  + I++RD +R+H F +G CSCGD+W
Sbjct: 715 VDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 754



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 203/385 (52%), Gaps = 45/385 (11%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           +P  F  N LL+      LL +   LF  MP+R+ VS+  +I+ +  A    +A      
Sbjct: 73  DPNLFTRNALLSALAHARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRA 132

Query: 166 MLREG-------VRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALID 215
           +LRE        VRP+  T S ++ A  +L    + RQ+HC I+++GF +  F  S L+D
Sbjct: 133 LLREEAVVDGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVD 192

Query: 216 IYAKLGELRNAECVFNEMPT-------------------------------RDLVVWNSI 244
           +YAK+G + +A+ VF+EM                                 RD + W ++
Sbjct: 193 MYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTM 252

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           + G  QN    EAL++++RM+  G   DQ T  S+L AC  LA  E G Q+H + ++  Y
Sbjct: 253 VTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLY 312

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           D ++ + +AL+DMY KC S+  A +VF RM  K++ISW+ MI G  QNG  +EA+++F  
Sbjct: 313 DGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSE 372

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           M+   IKPN  T+  V+ +C++   +E+G   F  M    G+ P     S ++ L G+ G
Sbjct: 373 MQTDGIKPNDFTLGSVISSCANLASLEEG-AQFHCMALVSGLRPYITVSSALVTLYGKCG 431

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALL 447
            +++A +L  EMP+  D V++ AL+
Sbjct: 432 SIEDAHRLFDEMPFH-DQVSYTALV 455



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 157/302 (51%), Gaps = 9/302 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M+  GV  D  T+  ++  C A  A EE K +H + +   ++   F+ + L++
Sbjct: 265 ALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVD 324

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +  A+ +F +M  +N++SWT MI  Y      ++A+ +   M  +G++PN FT
Sbjct: 325 MYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFT 384

Query: 178 YSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             +V+ +C +L  L    Q HC  +  G    + V SAL+ +Y K G + +A  +F+EMP
Sbjct: 385 LGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMP 444

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             D V + +++ G+AQ     E ++L+++M   G   +  T   VL AC+   L+E G  
Sbjct: 445 FHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCS 504

Query: 295 VHVHVLKYDHDLIL----NNALLDMYCKCGSLEDAMSVFSRMIQ-KDVISWSTMISGLAQ 349
            + H ++ DH ++L       ++D+Y + G L++A     +M +  D I W+T++S    
Sbjct: 505 -YFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRL 563

Query: 350 NG 351
            G
Sbjct: 564 RG 565


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/577 (39%), Positives = 335/577 (58%), Gaps = 12/577 (2%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVH-NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           R  + TY     C LA +A    +L    H+      P+    N LL  H      + A+
Sbjct: 45  RKTTATY----NCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGAR 100

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            LF  MP R+V SW TM+S    +   ++A  + + M    VR N  +++A++       
Sbjct: 101 RLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAM---PVR-NSVSWNAMVSGFACSG 156

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
            +            + D  + +A++  Y  +G +  A   F  MP R+LV WN+++ G+ 
Sbjct: 157 DMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYV 216

Query: 250 QNSDVDEALNLYKRMKR-AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDL 306
           +NS  D+AL L++ M R A    + STL+SVL  C+ L+ L  G Q+H   +K     +L
Sbjct: 217 KNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNL 276

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
            +  +L+ MYCKCG L  A  +F  M  +DV++W+ MISG AQ+G  +EA+ LFE MK  
Sbjct: 277 TVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDE 336

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
            ++PN+IT V VL AC H G  + G   F+ M++ YGI+P  +HYSCM+DLL RAGKL+ 
Sbjct: 337 GVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLER 396

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           AV  I  MP+EP    +  LL AC+V++N + A  AA K++  DPQ  G Y+ L+NIYA 
Sbjct: 397 AVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAV 456

Query: 487 SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
           + +WD+V+ VR+ M+   + K PG SWIE+   +H F   D  HPQ+  I++ L  L ++
Sbjct: 457 ANQWDDVSRVRRWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAER 516

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           +  +GY PD ++VL D++   K   +  HSEKLAI FGL+S   G T+RI KNLR+CGDC
Sbjct: 517 MKEMGYVPDLDFVLHDVDETMKVQMLMRHSEKLAIAFGLISTAHGMTLRIFKNLRVCGDC 576

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           H  AK+ + +E++ I++RD  R+HHF+ G+CSC DYW
Sbjct: 577 HNAAKVISMIEDREIILRDTTRFHHFRGGHCSCDDYW 613



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 104/254 (40%), Gaps = 53/254 (20%)

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD-VDEALNLYKRMKRAGF 269
           +A +    + G+L  AE  F   P +    +N ++ G+A+    + +A +L+ R+     
Sbjct: 21  TAAVAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPTP-- 78

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVF 329
                                              D++  N LL  +   G  + A  +F
Sbjct: 79  -----------------------------------DVVSYNTLLLCHFASGDADGARRLF 103

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
           + M  +DV SW+TM+SGL+++G  +EA  +F +M V         + G  FACS      
Sbjct: 104 ASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSG--FACS------ 155

Query: 390 DGWNHFKSMKKFYGIDPGREH---YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
                  + ++++   P +E    ++ M+      G + +A+K    MP   + V+W A+
Sbjct: 156 ---GDMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVR-NLVSWNAV 211

Query: 447 LGACKVHRNTDLAI 460
           +     + + D A+
Sbjct: 212 VAGYVKNSHADDAL 225


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/562 (40%), Positives = 339/562 (60%), Gaps = 8/562 (1%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQMPERNVVSWTTMI 147
           +EE K  H  +L  G   ++F  + L+       +  ++ A  +F QM E     + TM+
Sbjct: 1   MEEFKQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMM 60

Query: 148 SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFE 204
             +      ++AL     M   GV+P+ FTY  +L+AC  L  +    Q+H  I+K+G E
Sbjct: 61  RGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLE 120

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
           +DVFV+++LI +Y K GE+     VF +M  R +  W+++I   A      + L L   M
Sbjct: 121 NDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDM 180

Query: 265 KRAGF-AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGS 321
              G+  A++S L SVL ACT L  L+LG  VH  +L+    L  I+  +L++MY KCG 
Sbjct: 181 SNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGX 240

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
           L   M +F +M +K+ +S+S MISGLA +GY +E L++F  M    ++P+ I  VGVL A
Sbjct: 241 LYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNA 300

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
           CSHAG V++G   F  MK  +GI+P  +HY CM+DL+GRAGK+ EA++LI  MP EP+ V
Sbjct: 301 CSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDV 360

Query: 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
            WR+LL A KVH N      AAK++  LD Q    Y++LSN+YA +Q+W++VA  R  M 
Sbjct: 361 LWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMF 420

Query: 502 ARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQ 561
           ++G+++ PG S +EV +++H F   D+ HPQ + + + L  +  +L   GY PDT  VL 
Sbjct: 421 SKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQVLC 480

Query: 562 DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTI 621
           D++ E+K+  +  HS+KLAI + L+  +QG  +RI +NLR+C DCHT+ KL + + ++ I
Sbjct: 481 DVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDREI 540

Query: 622 VIRDPIRYHHFQDGNCSCGDYW 643
            +RD  R+HHF+DG CSC DYW
Sbjct: 541 TVRDRHRFHHFKDGACSCRDYW 562



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 144/287 (50%), Gaps = 10/287 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           GV+ D+ TY  L+K C    AVEE   VH H+L  G E + F+ N L++M+ K   +   
Sbjct: 83  GVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVC 142

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV-RPNMFTYSAVLRACDS 187
             +F+QM ER+V SW+ +I+A+    M    L LL  M  EG  R       +VL AC  
Sbjct: 143 CAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTH 202

Query: 188 LIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L  L   R +H  +++     +V V ++LI++Y K G L    C+F +M  ++ + ++ +
Sbjct: 203 LGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVM 262

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
           I G A +    E L ++  M   G   D      VL AC+   L++ G Q   + +K +H
Sbjct: 263 ISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQC-FNRMKLEH 321

Query: 305 DLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
            +         ++D+  + G +++A+ +   M ++ + + W +++S 
Sbjct: 322 GIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSA 368


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/579 (40%), Positives = 338/579 (58%), Gaps = 36/579 (6%)

Query: 67  CHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLE 126
           CH V+ D  T+  ++K C     +   K +H      G     F+ N L++M+ K   L 
Sbjct: 135 CH-VKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLS 193

Query: 127 EAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD 186
           EA+++ D+M  R+VVSW ++++ Y   +  D ALE+   M    +  +  T +++L A  
Sbjct: 194 EARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVS 253

Query: 187 SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
           +                E+ ++V+    D++ K+G+             + LV WN +IG
Sbjct: 254 NTTT-------------ENVMYVK----DMFFKMGK-------------KSLVSWNVMIG 283

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDH 304
            + +N+   EA+ LY  M+  GF  D  ++TSVL AC   + L LG ++H ++   K   
Sbjct: 284 VYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIP 343

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           +L+L NAL+DMY KCG L+ A  VF  M  +DV+SW+ MIS    +G   +A+ LF  M+
Sbjct: 344 NLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQ 403

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
            S + P+ I  V  L ACSHAG +E+G + FK M   Y I P  EH +CM+DLLGRAGK+
Sbjct: 404 DSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKV 463

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484
           +EA K I EMP EP+   W ALLGAC+VH NTD+ + AA K+  L P+  G Y+LLSNIY
Sbjct: 464 KEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIY 523

Query: 485 ANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLI 544
           A + +W+EV  +R  M+++G+ K PG S +EVN+ IH F V D SHPQ  +I + L  L+
Sbjct: 524 AKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLV 583

Query: 545 QKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ---GKTIRIRKNLR 601
           +K+  +GY PD+   L D+E E KE  +  HSEKLAIVF LM+  +      IRI KNLR
Sbjct: 584 KKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTEEEDSNNAIRITKNLR 643

Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
           ICGDCH  AKL +++ ++ I+IRD  R+H F+ G CSC 
Sbjct: 644 ICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCA 682



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 171/365 (46%), Gaps = 48/365 (13%)

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
           + VH+ ++S      + L   L+  +     +  A+ +FD++PERNV+    MI +Y + 
Sbjct: 60  RTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNN 119

Query: 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVR 210
               + +++   M    V+P+ +T+  VL+AC    +++I +++H    KVG  S +FV 
Sbjct: 120 GFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVG 179

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
           + L+ +Y K G L  A  V +EM  RD+V WNS++ G+AQN   D+AL + + M+    +
Sbjct: 180 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKIS 239

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFS 330
            D  T+ S+L A +      +                       MY K         +F 
Sbjct: 240 HDAGTMASLLPAVSNTTTENV-----------------------MYVK--------DMFF 268

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
           +M +K ++SW+ MI    +N    EA++L+  M+    +P+ ++I  VL AC     +  
Sbjct: 269 KMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSL 328

Query: 391 GWNHFKSMKKFYG------IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           G       KK +G      + P     + +ID+  + G L  A  +   M    D V+W 
Sbjct: 329 G-------KKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSR-DVVSWT 380

Query: 445 ALLGA 449
           A++ A
Sbjct: 381 AMISA 385



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 162/349 (46%), Gaps = 27/349 (7%)

Query: 172 RPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
           +   F    VL     L  LR +H  II      +  +   L+  YA L ++  A  VF+
Sbjct: 40  KETAFMLGQVLDTYPDLKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFD 99

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           E+P R++++ N +I  +  N    E + ++  M       D  T   VL+AC+    + +
Sbjct: 100 EIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVI 159

Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G ++H    K      L + N L+ MY KCG L +A  V   M ++DV+SW+++++G AQ
Sbjct: 160 GKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQ 219

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG-----FVEDGWNHFKSMKKFYGI 404
           N    +AL++   M+  +I  +  T+  +L A S+       +V+D +  FK  KK    
Sbjct: 220 NQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMF--FKMGKK---- 273

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMP---YEPDAVTWRALLGACKVHRNTDLAIC 461
                 ++ MI +  +     EAV+L   M    +EPDAV+  ++L AC        A+ 
Sbjct: 274 --SLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPAC----GDTSALS 327

Query: 462 AAKKILN-LDPQDPGTYILLSN----IYANSQKWDEVAEVRKTMRARGI 505
             KKI   ++ +     +LL N    +YA     D   +V + M++R +
Sbjct: 328 LGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDV 376



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 21/214 (9%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+  G   D+V+   ++  C    A+   K +H ++      P   L N L++
Sbjct: 294 AVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALID 353

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L+ A+ +F+ M  R+VVSWT MISAY  +     A+ L   M   G+ P+   
Sbjct: 354 MYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIA 413

Query: 178 YSAVLRACDSLIILRQLHCGIIKVG-----FESDVFVRSA-------LIDIYAKLGELRN 225
           +   L AC         H G+++ G       +D +  +        ++D+  + G+++ 
Sbjct: 414 FVTTLAACS--------HAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKE 465

Query: 226 AECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEAL 258
           A     EMP   +  VW +++G    +S+ D  L
Sbjct: 466 AYKFIQEMPMEPNERVWGALLGACRVHSNTDIGL 499


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/631 (36%), Positives = 361/631 (57%), Gaps = 39/631 (6%)

Query: 52  QRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Q   P+ A+     +    VR D      + K C A   +  AK +H+  +  GF  +  
Sbjct: 54  QHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLV 113

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           L N L++M  K   +  A+ +FD M  ++VVSWT+M   Y +  M  + + L   M   G
Sbjct: 114 LGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNG 173

Query: 171 VRPNMFTYSAVLRACDSLIIL-RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           +R N  T S++L AC   I L R++H  I++   E +V+V SAL+++YA    L+ A  V
Sbjct: 174 IRANSLTVSSILPACADYIKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLV 233

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS--------------- 274
           F+ M  RD+V WN ++  +  N + +  L L+ +M++ G   +Q+               
Sbjct: 234 FDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQH 293

Query: 275 --------------------TLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNAL 312
                               T+ S L  CT L  L  G ++H +V +  +  D+ +  AL
Sbjct: 294 ELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTAL 353

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           + +Y KCG LE +  VF+ M +KDV++W+TMI   + +G   E+L LF  M  S ++PN 
Sbjct: 354 VLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNS 413

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           +T +GVL  CSH+   ++G   F SM   + I P  +HYSCM+D+L RAG+L+EA   I 
Sbjct: 414 VTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIR 473

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
           +MP EP A  W ALLGAC+V++N +L   AA ++  ++P + G Y+LLSNI   ++KW E
Sbjct: 474 KMPIEPTAAAWGALLGACRVYKNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVE 533

Query: 493 VAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGY 552
            +E+RK MR +G+ K PG SW++V  ++++F   D S+ Q D I + L  + +K+   GY
Sbjct: 534 ASEIRKMMRDKGLAKTPGRSWVQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGY 593

Query: 553 APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
            P+T++VLQ+++ EQ+E+++  HSE+LA+ FG+++ +   T+R+ KNLRICGDCH   KL
Sbjct: 594 QPNTDFVLQNVDQEQREETLCSHSERLAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKL 653

Query: 613 TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            AK+    I++RD +R+HHF+DG C+C D+W
Sbjct: 654 IAKIVGMQIIVRDSLRFHHFRDGYCTCNDFW 684



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 205/420 (48%), Gaps = 47/420 (11%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L+ A  LFD++PE ++ +WT +IS +       KA+++   +L   VRP+ F   +V +A
Sbjct: 27  LKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAKA 86

Query: 185 CDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C +   L++ +++H   I+ GF  D+ + +ALID++ K   +  A CVF++M  +D+V W
Sbjct: 87  CAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSW 146

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            S+   +       + + L++ M   G  A+  T++S+L AC     ++LG +VH  +L+
Sbjct: 147 TSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACAD--YIKLGREVHGFILR 204

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM---------------- 343
              + ++ +++AL++MY     L+ A  VF  M  +D++SW+ M                
Sbjct: 205 NEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGL 264

Query: 344 -------------------ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
                              ISG  QNG  + AL +   M+ S IKPN ITIV  L  C++
Sbjct: 265 FHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTN 324

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
              +  G      + + + I+      + ++ L  + G L+ +  + + MP   D V W 
Sbjct: 325 LESLRGGKEIHGYVFRHWFIED-VTITTALVLLYAKCGDLELSRHVFNTMP-RKDVVAWN 382

Query: 445 ALLGACKVHRNTDLAICAAKKILN--LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502
            ++ A  +H     ++    K+L+  ++P    T+I + +  ++SQ  DE   V  +M +
Sbjct: 383 TMIMANSMHGKGGESLILFNKMLDSGVEPNSV-TFIGVLSGCSHSQLADEGLLVFNSMSS 441



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 121/237 (51%), Gaps = 18/237 (7%)

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           G+L+ A  +F+++P  DL  W  +I G  Q+    +A+++Y  +       D+  L SV 
Sbjct: 25  GDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVA 84

Query: 281 RACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
           +AC     L +  ++H   +++  + DL+L NAL+DM+ KC  +  A  VF  M+ KDV+
Sbjct: 85  KACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVV 144

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
           SW++M       G  ++ + LF  M ++ I+ N +T+  +L AC+         ++ K  
Sbjct: 145 SWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACA---------DYIKLG 195

Query: 399 KKFYGIDPGREH------YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           ++ +G     E        S ++++   +  L++A +L+ +  Y  D V+W  +L A
Sbjct: 196 REVHGFILRNEMEGNVYVSSALVNMYASSLGLKQA-RLVFDSMYHRDIVSWNVMLTA 251


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/647 (37%), Positives = 361/647 (55%), Gaps = 29/647 (4%)

Query: 6   VSKLKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAM 65
           +  L+W   SS AR F LT                  +D   R     DL     A+  +
Sbjct: 9   IRALRWVSTSS-ARFFPLT------------EKEEQQIDRLERL----DL---RDAVQLL 48

Query: 66  QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL 125
           +   V   +   A  ++ C +  A+ E K +H H++  GF+   +L N+L+ M+ K   L
Sbjct: 49  EDRSVSPSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSL 108

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
           + A+ +F   P RNV SWT M++A+        AL LL  M  EG+ PN  T+  +L A 
Sbjct: 109 QAAKSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGAV 168

Query: 186 DSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
            +L  L   R LH  I   GF +D+FV + LI++YAK   L +A  VF  + +R ++ W 
Sbjct: 169 AALSWLDRGRALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESLTSRSVIAWT 228

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH-VHVLK 301
           +++  +A N    +AL ++  M   G    + T  +V+  C  +A+  +G +VH V   +
Sbjct: 229 ALVAAYALNGFFRDALKVFLLMTLDGVEPTEVTFVTVVDVCADIAVFGIGREVHGVIDAR 288

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
            + ++ + NAL++MY KC S ++A  VF  M +KD+I+W++MI+   QNGY  +AL++++
Sbjct: 289 SEANVCVGNALINMYGKCASPDEARKVFDAMQRKDIITWNSMIAVYGQNGYGFQALEIYK 348

Query: 362 SMKVSR-----IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
            M+ SR     I  + IT +GVLFACSHAG V+D    + SM   YG  P      C+ID
Sbjct: 349 RMQESRMTILGITHDDITFIGVLFACSHAGLVKDSCKLYSSMIGDYGFKPTSLQCGCLID 408

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476
           LLGRAG L EA + I+ MPY PD   W  LLGAC  H + + A  AA +I+ L P D G+
Sbjct: 409 LLGRAGWLDEAEEFINSMPYHPDHTIWTILLGACITHADVERAARAADRIMALRPTDSGS 468

Query: 477 YILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKI 536
           Y+ LSN+YA +++WD++A +RK M  RG+ K  G S IE+   +H F   D+SHP+  +I
Sbjct: 469 YVALSNLYALAERWDDMARMRKLMDQRGVFKMAGKSSIEIGGVLHEFIAGDTSHPRKREI 528

Query: 537 NKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRI 596
            + L+ +   +   GY PD   VL +   E KE    +HSE+LAI FG++S   G  +RI
Sbjct: 529 YEELRRIEGVIRERGYVPDIKAVLHNAAREAKEKMCCFHSERLAIAFGMISSPGGTELRI 588

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KNLR+C DCH+  K+ +K   + I++RD  R+H F++G+CSC DYW
Sbjct: 589 MKNLRVCPDCHSATKIISKFSGRKIIVRDANRFHEFRNGSCSCEDYW 635


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/610 (36%), Positives = 351/610 (57%), Gaps = 10/610 (1%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++  F+R  Y  D  R    M  +   G+  DS T A ++              +   
Sbjct: 183 NTMISGFSRNSYFEDSIRVFVDMLDV---GLSFDSTTLATVLTAVAELQEYRLGMGIQCL 239

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
               G   + +++  L++++ K     + ++LFDQ+ + +++S+  MIS Y      + A
Sbjct: 240 ASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESA 299

Query: 160 LELLIFMLREGVRPNMFTYSAVLRA---CDSLIILRQLHCGIIKVGFESDVFVRSALIDI 216
           + L   +L  G R N  T   ++      + L + R +    +K+G      V +AL  +
Sbjct: 300 VTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTV 359

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           Y +L E++ A  +F+E P + L  WN++I G+ QN   D A++L++ M     + +  T+
Sbjct: 360 YCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLSPNPVTV 418

Query: 277 TSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
           TS+L AC  L  L +G  VH  +   + + ++ ++ AL+DMY KCGS+ +A  +F  M+ 
Sbjct: 419 TSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVD 478

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
           K+V++W+ MI+G   +G+ +EALKLF  M  S I P  +T + +L+ACSH+G V +G   
Sbjct: 479 KNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEI 538

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR 454
           F SM   YG  P  EHY+CM+D+LGRAG+L  A++ I  MP EP    W ALLGAC +H+
Sbjct: 539 FHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHK 598

Query: 455 NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWI 514
           NT++A  A+K++  LDP++ G Y+LLSNIY+  + + + A VR+ ++ R + K PGC+ I
Sbjct: 599 NTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLI 658

Query: 515 EVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDT-NYVLQDLEGEQKEDSIQ 573
           E++ Q + F   D SHPQ   I + L+ L  K+   GY  +T    L D+E E+KE  + 
Sbjct: 659 EIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVN 718

Query: 574 YHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQ 633
            HSEKLAI FGL+S   G  IRI KNLR+C DCHT  K  +K+  + IV+RD  R+HHF+
Sbjct: 719 VHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFK 778

Query: 634 DGNCSCGDYW 643
           +G CSCGDYW
Sbjct: 779 NGICSCGDYW 788



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 122/464 (26%), Positives = 222/464 (47%), Gaps = 13/464 (2%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPRAMKAM--HAMQCHGVRADSVTYAELIKCCLARHAV 90
           N +++    L +   R      LP++   +  H  +   +R D+ TYA  I         
Sbjct: 70  NKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDE 129

Query: 91  EEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
               L+H H +  G     F+ + +++++ KF+  E A+ +FD MPER+ V W TMIS +
Sbjct: 130 RVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGF 189

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDV 207
                 + ++ + + ML  G+  +  T + VL A   L   R    + C   K G  SDV
Sbjct: 190 SRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDV 249

Query: 208 FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
           +V + LI +Y+K G+      +F+++   DL+ +N++I G+  N + + A+ L++ +  +
Sbjct: 250 YVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLAS 309

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDA 325
           G   + STL  ++        L+L   +    LK    L   ++ AL  +YC+   ++ A
Sbjct: 310 GQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFA 369

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F    +K + SW+ MISG  QNG +  A+ LF+ M + ++ PN +T+  +L AC+  
Sbjct: 370 RQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQL 428

Query: 386 GFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           G +  G W H   + K   ++      + ++D+  + G + EA +L   M  + + VTW 
Sbjct: 429 GALSIGKWVH--GLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWN 485

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
           A++    +H +   A+    ++L      P     LS +YA S 
Sbjct: 486 AMITGYGLHGHGKEALKLFYEMLQ-SGIPPTGVTFLSILYACSH 528



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 178/374 (47%), Gaps = 26/374 (6%)

Query: 119 HVKFSLLEEAQV--LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR-EGVRPNM 175
           H  F L   A V  LF+++ + ++  +  +I  + D  +   ++ L   + +   +RP+ 
Sbjct: 54  HKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDN 113

Query: 176 FTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           FTY+  + A   L   R    LH   I  G  S++FV SA++D+Y K      A  VF+ 
Sbjct: 114 FTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDV 173

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           MP RD V+WN++I GF++NS  ++++ ++  M   G + D +TL +VL A   L    LG
Sbjct: 174 MPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLG 233

Query: 293 TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
             +     K     D+ +   L+ +Y KCG       +F ++ Q D+IS++ MISG   N
Sbjct: 234 MGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFN 293

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK--------SMKKFY 402
             ++ A+ LF  +  S  + N  T+VG++        V   +NH +        S+K   
Sbjct: 294 HETESAVTLFRELLASGQRVNSSTLVGLI-------PVYLPFNHLQLSRLIQNLSLKIGI 346

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            + P     + +  +  R  ++Q A +L  E P E    +W A++     +  TD AI  
Sbjct: 347 ILQPSVS--TALTTVYCRLNEVQFARQLFDESP-EKSLASWNAMISGYTQNGLTDRAISL 403

Query: 463 AKKILNLDPQDPGT 476
            ++++     +P T
Sbjct: 404 FQEMMPQLSPNPVT 417



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 140/301 (46%), Gaps = 6/301 (1%)

Query: 170 GVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
            +R   F +  +L    +L  L Q+   +I  G   D+   + L   +  LG + +   +
Sbjct: 10  AIRGQRF-FLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQL 68

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR-AGFAADQSTLTSVLRACTGLAL 288
           FN++   DL ++N +I GF+ N     ++ LY  +++      D  T    + A + L  
Sbjct: 69  FNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLED 128

Query: 289 LELGTQVHVH--VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
             +G  +H H  V     +L + +A++D+Y K    E A  VF  M ++D + W+TMISG
Sbjct: 129 ERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISG 188

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
            ++N Y ++++++F  M    +  +  T+  VL A +       G    + +    G+  
Sbjct: 189 FSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMG-IQCLASKKGLHS 247

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
                + +I L  + GK  +  +++ +   +PD +++ A++     +  T+ A+   +++
Sbjct: 248 DVYVLTGLISLYSKCGKSCKG-RILFDQIDQPDLISYNAMISGYTFNHETESAVTLFREL 306

Query: 467 L 467
           L
Sbjct: 307 L 307


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/483 (44%), Positives = 304/483 (62%), Gaps = 13/483 (2%)

Query: 169 EGVRPNMFTYSAVL-----RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
           + V+P +F++  V      R    ++    L C +       D      +I  Y      
Sbjct: 3   QAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAY-----F 57

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
            +A  VF  MP +D+V WNS+I GFA N   +EAL LYKRM   G   D  T+ S+L AC
Sbjct: 58  ESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSAC 117

Query: 284 TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISW 340
             LA L LG + HV+++K   + +L  NNALLD+Y KCG++ +A  +F  M I+++V+SW
Sbjct: 118 AELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSW 177

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           +++I GLA NG+ +EAL+ F+ M+   + P+ IT VGVL+ACSH G V +G+ +FK MK+
Sbjct: 178 TSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKE 237

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            Y I P  EHY CM+DLLGRAG L+EA   I +MP +P+AV WR LLGAC +H +  L  
Sbjct: 238 QYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGA 297

Query: 461 CAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQI 520
            A  ++L L+P+D G Y+LLSN+YA+ Q+W +V EVR+TM + G+ K PG S +E+   +
Sbjct: 298 FARARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHV 357

Query: 521 HAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLA 580
           H F + D +HPQ + I K L  +  KL   GY P T  VL D+E E+KE ++ YHSEK+A
Sbjct: 358 HEFVMGDRTHPQSEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIA 417

Query: 581 IVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
           I F L++   G  IRI KNLR+C DCH   KL +K+  + IV+RD  R+HHF+DG+CSC 
Sbjct: 418 IAFMLINTLPGTPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCR 477

Query: 641 DYW 643
           DYW
Sbjct: 478 DYW 480



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 137/257 (53%), Gaps = 12/257 (4%)

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
           +  E A  +F+ MPE+++V+W ++I+ +      ++AL L   M  EGV P+ FT  ++L
Sbjct: 55  AYFESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLL 114

Query: 183 RAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT-RDL 238
            AC    +L++ R+ H  ++KVG   ++   +AL+D+YAK G +  A  +F+EM   R++
Sbjct: 115 SACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNV 174

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           V W S+I G A N    EAL  +K M+R G    + T   VL AC+   ++  G + +  
Sbjct: 175 VSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFE-YFK 233

Query: 299 VLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYS 353
            +K  +D++        ++D+  + G L++A      M +Q + + W T++     +G+ 
Sbjct: 234 RMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHL 293

Query: 354 QEALKLFESMKVSRIKP 370
              L  F   ++ +++P
Sbjct: 294 --GLGAFARARLLQLEP 308



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 121/280 (43%), Gaps = 45/280 (16%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M   GV  D  T   L+  C     +   +  H +++  G        N LL+
Sbjct: 91  ALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVYMVKVGLNKNLHANNALLD 150

Query: 118 MHVKFSLLEEAQVLFDQMP-ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           ++ K   + EA+ +FD+M  ERNVVSWT++I          +ALE    M REG+ P+  
Sbjct: 151 LYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEI 210

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFE--------SDVFVR----SALIDIYAKLGELR 224
           T+  VL AC         HCGI+  GFE         D+  R      ++D+  + G L+
Sbjct: 211 TFVGVLYACS--------HCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLK 262

Query: 225 NAECVFNEMPTR-DLVVWNSI-----------IGGFAQ----------NSDVDEALNLYK 262
            A     +MP + + V+W ++           +G FA+          + D     NLY 
Sbjct: 263 EAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPKDSGDYVLLSNLYA 322

Query: 263 RMKRAGFAAD--QSTLTSVLRACTGLALLELGTQVHVHVL 300
             +R     +  ++ L+  +R   G +L+ELG  VH  V+
Sbjct: 323 SEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVM 362


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/637 (36%), Positives = 354/637 (55%), Gaps = 52/637 (8%)

Query: 59   MKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118
             K    M+  G   +  T + L KCC     ++  K VH  +L  G + +  L N +L++
Sbjct: 375  FKLFREMRAKGACPNQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDL 434

Query: 119  HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK-------------------- 158
            ++K  + E A+ +F+ M E +VVSW  MISAY  A   +K                    
Sbjct: 435  YLKCKVFEYAERVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYKDVVSWNTIV 494

Query: 159  -----------ALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFE 204
                       ALE L  M+  G   ++ T+S  L    SL ++   RQLH  ++K GF 
Sbjct: 495  DGLMQFGYERQALEQLYCMVECGTEFSVVTFSIALILSSSLSLVELGRQLHGMVLKFGFC 554

Query: 205  SDVFVRSALIDIYAKLGELRNAECVFNEMP----------------TRDLVVWNSIIGGF 248
             D F+RS+L+++Y K G + NA  V  ++P                   +V W  ++ G+
Sbjct: 555  RDGFIRSSLVEMYCKCGRMDNASIVLKDVPLDFLKNGNAGVTCKELKAGIVSWGLMVSGY 614

Query: 249  AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DL 306
              N   ++ L  ++ M R     D  T+T+++ AC    +LE G  VH +  K  H  D 
Sbjct: 615  VWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYNHKIGHRIDA 674

Query: 307  ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
             + ++L+DMY K GSL+DA ++F +  + +++ W++MISG A +G  ++A+ LFE M   
Sbjct: 675  YVGSSLIDMYSKSGSLDDAWTIFRQTNEPNIVFWTSMISGCALHGQGKQAICLFEEMLNQ 734

Query: 367  RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
             I PN +T +GVL AC HAG +E+G  +F+ MK  Y I+PG EH + M+DL GRAG L E
Sbjct: 735  GIIPNEVTFLGVLNACCHAGLLEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTE 794

Query: 427  AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
                I E         W++ L +C++H+N ++    ++ +L + P DPG Y+LLSN+ A+
Sbjct: 795  TKNFIFENGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCAS 854

Query: 487  SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
            + +WDE A VR  M  RGI K+PG SWI++  QIH F + D SHPQ ++I  +L  LI +
Sbjct: 855  NHRWDEAARVRSLMHQRGIKKQPGQSWIQLKDQIHTFIMGDRSHPQDEEIYSYLDILIGR 914

Query: 547  LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
            L  +GY+ D   V+QD+E EQ E  I +HSEKLA+VFG+++      IRI KNLRIC DC
Sbjct: 915  LKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDC 974

Query: 607  HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            H F K  +++ ++ I++RD  R+HHF+ G CSCGDYW
Sbjct: 975  HNFIKYASQLLDREIILRDIHRFHHFKHGGCSCGDYW 1011



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 200/408 (49%), Gaps = 54/408 (13%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N LL ++VK S ++ A+ LFD++P+RN  +WT +IS +  A  ++   +L   M  +G  
Sbjct: 328 NYLLTLYVKSSNMDHARKLFDEIPQRNTQTWTILISGFSRAGSSEVVFKLFREMRAKGAC 387

Query: 173 PNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           PN +T S++ + C    +L + + +H  +++ G ++DV + ++++D+Y K      AE V
Sbjct: 388 PNQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERV 447

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR-------------------------- 263
           F  M   D+V WN +I  + +  DV+++L++++R                          
Sbjct: 448 FELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLMQFGYERQAL 507

Query: 264 -----MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMY 316
                M   G      T +  L   + L+L+ELG Q+H  VLK+    D  + ++L++MY
Sbjct: 508 EQLYCMVECGTEFSVVTFSIALILSSSLSLVELGRQLHGMVLKFGFCRDGFIRSSLVEMY 567

Query: 317 CKCGSLEDAMSVFS----------------RMIQKDVISWSTMISGLAQNGYSQEALKLF 360
           CKCG +++A  V                  + ++  ++SW  M+SG   NG  ++ LK F
Sbjct: 568 CKCGRMDNASIVLKDVPLDFLKNGNAGVTCKELKAGIVSWGLMVSGYVWNGKYEDGLKTF 627

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420
             M    +  +  T+  ++ AC++AG +E G  H  +     G        S +ID+  +
Sbjct: 628 RLMVRELVVVDIRTVTTIISACANAGILEFG-RHVHAYNHKIGHRIDAYVGSSLIDMYSK 686

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           +G L +A  +  +   EP+ V W +++  C +H     AIC  +++LN
Sbjct: 687 SGSLDDAWTIFRQTN-EPNIVFWTSMISGCALHGQGKQAICLFEEMLN 733



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 2/175 (1%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           L  LH   +K G    +   + L+ +Y K   + +A  +F+E+P R+   W  +I GF++
Sbjct: 308 LGTLHALSVKNGSLQTLNSANYLLTLYVKSSNMDHARKLFDEIPQRNTQTWTILISGFSR 367

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
               +    L++ M+  G   +Q TL+S+ + C+    L+LG  VH  +L+   D D++L
Sbjct: 368 AGSSEVVFKLFREMRAKGACPNQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVL 427

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            N++LD+Y KC   E A  VF  M + DV+SW+ MIS   + G  +++L +F  +
Sbjct: 428 GNSILDLYLKCKVFEYAERVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRL 482


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/557 (38%), Positives = 340/557 (61%), Gaps = 38/557 (6%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG--VRPNMFTYSAVL 182
           L+ A  + D+  +  + +  +MI A+C + + +K+ +    +L  G  ++P+ +T + ++
Sbjct: 56  LDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLV 115

Query: 183 RACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE------- 232
           +AC  L +     Q+H   I+ GF++D  V++ LI +YA+LG L +   VFN        
Sbjct: 116 QACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFV 175

Query: 233 ------------------------MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
                                   MP RD + WN++I G+AQ  +  EALN++  M+  G
Sbjct: 176 CRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEG 235

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNALLDMYCKCGSLEDAM 326
              +   + SVL ACT L  L+ G   H ++ +    +   L   L+D+Y KCG +E AM
Sbjct: 236 VKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAM 295

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            VF  M +K+V +WS+ ++GLA NG+ ++ L+LF  MK   + PN +T V VL  CS  G
Sbjct: 296 EVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVG 355

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
           FV++G  HF SM+  +GI+P  EHY C++DL  RAG+L++AV +I +MP +P A  W +L
Sbjct: 356 FVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSL 415

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           L A ++++N +L + A+KK+L L+  + G Y+LLSNIYA+S  WD V+ VR++M+++G+ 
Sbjct: 416 LHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVR 475

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           K+PGCS +EVN ++H F V D SHP+  +I+   K + ++L   GY  DT  V+ D++ E
Sbjct: 476 KQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEE 535

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
           +KED++  HSEK AI FG+MSL +   IRI KNLR+CGDCH  + + +K+ N+ I++RD 
Sbjct: 536 EKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDR 595

Query: 627 IRYHHFQDGNCSCGDYW 643
            R+HHF+DG+CSC  +W
Sbjct: 596 NRFHHFKDGHCSCNGFW 612



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 95/193 (49%), Gaps = 5/193 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+   H MQ  GV+ + V    ++  C    A+++ +  H+++     +    L   L++
Sbjct: 224 ALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVD 283

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++ K   +E+A  +F  M E+NV +W++ ++        +K LEL   M ++GV PN  T
Sbjct: 284 LYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVT 343

Query: 178 YSAVLRACDSLIIL----RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           + +VLR C  +  +    R       + G E  +     L+D+YA+ G L +A  +  +M
Sbjct: 344 FVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQM 403

Query: 234 PTRD-LVVWNSII 245
           P +    VW+S++
Sbjct: 404 PMKPHAAVWSSLL 416


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/610 (36%), Positives = 351/610 (57%), Gaps = 10/610 (1%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++  F+R  Y  D  R    M  +   G+  DS T A ++              +   
Sbjct: 183 NTMISGFSRNSYFEDSIRVFVDMLDV---GLSFDSTTLATVLTAVAELQEYRLGMGIQCL 239

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
               G   + +++  L++++ K     + ++LFDQ+ + +++S+  MIS Y      + A
Sbjct: 240 ASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESA 299

Query: 160 LELLIFMLREGVRPNMFTYSAVLRA---CDSLIILRQLHCGIIKVGFESDVFVRSALIDI 216
           + L   +L  G R N  T   ++      + L + R +    +K+G      V +AL  +
Sbjct: 300 VTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTV 359

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           Y +L E++ A  +F+E P + L  WN++I G+ QN   D A++L++ M     + +  T+
Sbjct: 360 YCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLSPNPVTV 418

Query: 277 TSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
           TS+L AC  L  L +G  VH  +   + + ++ ++ AL+DMY KCGS+ +A  +F  M+ 
Sbjct: 419 TSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVD 478

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
           K+V++W+ MI+G   +G+ +EALKLF  M  S I P  +T + +L+ACSH+G V +G   
Sbjct: 479 KNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEI 538

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR 454
           F SM   YG  P  EHY+CM+D+LGRAG+L  A++ I  MP EP    W ALLGAC +H+
Sbjct: 539 FHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHK 598

Query: 455 NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWI 514
           NT++A  A+K++  LDP++ G Y+LLSNIY+  + + + A VR+ ++ R + K PGC+ I
Sbjct: 599 NTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLI 658

Query: 515 EVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDT-NYVLQDLEGEQKEDSIQ 573
           E++ Q + F   D SHPQ   I + L+ L  K+   GY  +T    L D+E E+KE  + 
Sbjct: 659 EIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVN 718

Query: 574 YHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQ 633
            HSEKLAI FGL+S   G  IRI KNLR+C DCHT  K  +K+  + IV+RD  R+HHF+
Sbjct: 719 VHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFK 778

Query: 634 DGNCSCGDYW 643
           +G CSCGDYW
Sbjct: 779 NGICSCGDYW 788



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/464 (26%), Positives = 222/464 (47%), Gaps = 13/464 (2%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPRAMKAM--HAMQCHGVRADSVTYAELIKCCLARHAV 90
           N +++    L +   R      LP++   +  H  +   +R D+ TYA  I         
Sbjct: 70  NKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDE 129

Query: 91  EEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
               L+H H +  G     F+ + +++++ KF+  E A+ +FD MPER+ V W TMIS +
Sbjct: 130 RVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGF 189

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDV 207
                 + ++ + + ML  G+  +  T + VL A   L   R    + C   K G  SDV
Sbjct: 190 SRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDV 249

Query: 208 FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
           +V + LI +Y+K G+      +F+++   DL+ +N++I G+  N + + A+ L++ +  +
Sbjct: 250 YVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLAS 309

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDA 325
           G   + STL  ++        L+L   +    LK    L   ++ AL  +YC+   ++ A
Sbjct: 310 GQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFA 369

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F    +K + SW+ MISG  QNG +  A+ LF+ M + ++ PN +T+  +L AC+  
Sbjct: 370 RQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQL 428

Query: 386 GFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           G +  G W H   + K   ++      + ++D+  + G + EA +L   M  + + VTW 
Sbjct: 429 GALSIGKWVH--GLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWN 485

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
           A++    +H +   A+    ++L      P     LS +YA S 
Sbjct: 486 AMITGYGLHGHGKEALKLFYEMLQ-SGIPPTGVTFLSILYACSH 528



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 179/374 (47%), Gaps = 26/374 (6%)

Query: 119 HVKFSLLEEAQV--LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNM 175
           H  F L   A V  LF+++ + ++  +  +I  + D  +   ++ L   + ++  +RP+ 
Sbjct: 54  HKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDN 113

Query: 176 FTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           FTY+  + A   L   R    LH   I  G  S++FV SA++D+Y K      A  VF+ 
Sbjct: 114 FTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDV 173

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           MP RD V+WN++I GF++NS  ++++ ++  M   G + D +TL +VL A   L    LG
Sbjct: 174 MPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLG 233

Query: 293 TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
             +     K     D+ +   L+ +Y KCG       +F ++ Q D+IS++ MISG   N
Sbjct: 234 MGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFN 293

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK--------SMKKFY 402
             ++ A+ LF  +  S  + N  T+VG++        V   +NH +        S+K   
Sbjct: 294 HETESAVTLFRELLASGQRVNSSTLVGLI-------PVYLPFNHLQLSRLIQNLSLKIGI 346

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            + P     + +  +  R  ++Q A +L  E P E    +W A++     +  TD AI  
Sbjct: 347 ILQPSVS--TALTTVYCRLNEVQFARQLFDESP-EKSLASWNAMISGYTQNGLTDRAISL 403

Query: 463 AKKILNLDPQDPGT 476
            ++++     +P T
Sbjct: 404 FQEMMPQLSPNPVT 417



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 140/301 (46%), Gaps = 6/301 (1%)

Query: 170 GVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
            +R   F +  +L    +L  L Q+   +I  G   D+   + L   +  LG + +   +
Sbjct: 10  AIRGQRF-FLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQL 68

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLAL 288
           FN++   DL ++N +I GF+ N     ++ LY  + K+     D  T    + A + L  
Sbjct: 69  FNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLED 128

Query: 289 LELGTQVHVH--VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
             +G  +H H  V     +L + +A++D+Y K    E A  VF  M ++D + W+TMISG
Sbjct: 129 ERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISG 188

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
            ++N Y ++++++F  M    +  +  T+  VL A +       G    + +    G+  
Sbjct: 189 FSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMG-IQCLASKKGLHS 247

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
                + +I L  + GK  +  +++ +   +PD +++ A++     +  T+ A+   +++
Sbjct: 248 DVYVLTGLISLYSKCGKSCKG-RILFDQIDQPDLISYNAMISGYTFNHETESAVTLFREL 306

Query: 467 L 467
           L
Sbjct: 307 L 307


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/577 (38%), Positives = 337/577 (58%), Gaps = 4/577 (0%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R DS T+   +  C     ++ A+ V     + G+  + F+ + LL+++ +   + +A  
Sbjct: 108 RPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIR 167

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           +FD MP ++ V+W+TM++ +  A    +AL +   M   GV  +      V++AC     
Sbjct: 168 VFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGN 227

Query: 191 LR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
            R    +H   ++ G   DV + ++L+D+YAK G    A  VF  MP R+ V WN++I G
Sbjct: 228 TRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISG 287

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDL 306
           FAQN   DEAL+L++ M  +G   D   L S L AC  +  L+LG  +H  +L+  +   
Sbjct: 288 FAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRRLEFQC 347

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
           IL  A+LDMY KCGSLE A  +F+++  +D++ W+ MI+    +G   +AL LF+ +  +
Sbjct: 348 ILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNET 407

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
            IKP++ T   +L A SH+G VE+G   F  M   +GI+P  +H  C++DLL R+G ++E
Sbjct: 408 GIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEE 467

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           A +++  M  EP    W ALL  C  ++  +L    AKKIL   P+D G   L+SN+YA 
Sbjct: 468 ANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAA 527

Query: 487 SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
           ++KWD+V E+RK M+  G  K PG S IEV+   HAF + D SHPQ  +I K +  L  +
Sbjct: 528 AKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSFE 587

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           +  +GY P T +V  DL+ + KE  + YHSE+LAI FGL++ + G  + I KNLR+CGDC
Sbjct: 588 MRKMGYVPRTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDC 647

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           H   K  +K+ ++ IV+RD  R+HHF+DG CSCGDYW
Sbjct: 648 HDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 163/354 (46%), Gaps = 33/354 (9%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+ HGV  D V    +I+ C           VH   L  G   +  +   L++M+ K   
Sbjct: 203 MREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGH 262

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            + A+ +F  MP RN VSW  +IS +      D+AL+L   M   G++P+     + L A
Sbjct: 263 FDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLA 322

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C  +  L   + +H G I    E    + +A++D+Y+K G L +A  +FN++ +RDLV+W
Sbjct: 323 CADVGFLKLGKSIH-GFILRRLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLW 381

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N++I     +    +AL L++ +   G   D +T  S+L A +   L+E G        K
Sbjct: 382 NAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEG--------K 433

Query: 302 YDHDLILNN-----------ALLDMYCKCGSLEDAMSVFSRMIQKDVIS-WSTMISGLAQ 349
           +  D ++              ++D+  + G +E+A  + + M  +  I  W  ++SG   
Sbjct: 434 FWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLN 493

Query: 350 NGYSQEALKLFESM--KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
           N    + L+L E++  K+   +P  I   GVL   S+       W+  + ++K 
Sbjct: 494 N----KKLELGETIAKKILESQPEDI---GVLALVSNLYAAAKKWDKVREIRKL 540


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/586 (37%), Positives = 366/586 (62%), Gaps = 8/586 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP-ETFLVNILLNMHVKFS 123
           M   GV  D+ T++ + K       +   +  H   +  G E  + F+ + L++M+ KF 
Sbjct: 92  MLMEGVLPDAYTFSAISKAFSQLGLIRHGQRAHGLAVVLGLEVLDGFVASALVDMYAKFD 151

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
            + +A ++F ++ E++VV +T +I  Y    ++ +AL++   M+  GV+PN +T + +L 
Sbjct: 152 KMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVNRGVKPNEYTLACILI 211

Query: 184 ACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
            C +L  L   + +H  ++K G ES V  +++L+ +Y++   + ++  VFN++   + V 
Sbjct: 212 NCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVT 271

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           W S + G  QN   + A+++++ M R   + +  TL+S+L+AC+ LA+LE+G Q+H   +
Sbjct: 272 WTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLEVGEQIHAITM 331

Query: 301 KY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K   D +     AL+++Y KCG+++ A SVF  + + DV++ ++MI   AQNG+  EAL+
Sbjct: 332 KLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLTELDVVAINSMIYAYAQNGFGHEALE 391

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
           LFE +K   + PN +T + +L AC++AG VE+G   F S++  + I+   +H++CMIDLL
Sbjct: 392 LFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNNHNIELTIDHFTCMIDLL 451

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
           GR+ +L+EA  LI E+   PD V WR LL +CK+H   ++A     KIL L P D GT+I
Sbjct: 452 GRSRRLEEAAMLIEEVR-NPDVVLWRTLLNSCKIHGEVEMAEKVMSKILELAPGDGGTHI 510

Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
           LL+N+YA++ KW++V E++ T+R   + K P  SW++V++++H F   D SHP+  +I +
Sbjct: 511 LLTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSWVDVDREVHTFMAGDLSHPRSLEIFE 570

Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGL-MSLTQGKTIRIR 597
            L  L++K+  +GY P+T +VLQDL+ E+K  S+ YHSEKLAI + L  ++ +  TIRI 
Sbjct: 571 MLHGLMKKVKTLGYNPNTRFVLQDLDEEKKISSLYYHSEKLAIAYALWKTIGRTTTIRIF 630

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLR+CGDCH++ K  + +  + I+ RD  R+HHF+ G CSC DYW
Sbjct: 631 KNLRVCGDCHSWIKFVSLLTGRDIIARDSKRFHHFKGGLCSCKDYW 676



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/380 (31%), Positives = 214/380 (56%), Gaps = 11/380 (2%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y+ LI       ++   + VH +V+  GF   +FL + L++ ++K   L EA+ LFD++P
Sbjct: 4   YSSLIAQSAHTKSLTTLRAVHTNVIKSGF-SYSFLGHKLIDGYIKCGSLAEARKLFDELP 62

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---Q 193
            R++V+W +MIS++     + +A+E    ML EGV P+ +T+SA+ +A   L ++R   +
Sbjct: 63  SRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQR 122

Query: 194 LHCGIIKVGFES-DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            H   + +G E  D FV SAL+D+YAK  ++R+A  VF  +  +D+V++ ++I G+AQ+ 
Sbjct: 123 AHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHG 182

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLIL--NN 310
              EAL +++ M   G   ++ TL  +L  C  L  L  G  +H  V+K   + ++    
Sbjct: 183 LDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQT 242

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           +LL MY +C  +ED++ VF+++   + ++W++ + GL QNG  + A+ +F  M    I P
Sbjct: 243 SLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISP 302

Query: 371 NYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           N  T+  +L ACS    +E G   H  +MK   G+D  +   + +I+L G+ G + +A +
Sbjct: 303 NPFTLSSILQACSSLAMLEVGEQIHAITMK--LGLDGNKYAGAALINLYGKCGNMDKA-R 359

Query: 430 LIHEMPYEPDAVTWRALLGA 449
            + ++  E D V   +++ A
Sbjct: 360 SVFDVLTELDVVAINSMIYA 379



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 163/320 (50%), Gaps = 10/320 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+K    M   GV+ +  T A ++  C     +   +L+H  V+  G E        LL 
Sbjct: 187 ALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLT 246

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ + +++E++  +F+Q+   N V+WT+ +         + A+ +   M+R  + PN FT
Sbjct: 247 MYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFT 306

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            S++L+AC SL +L    Q+H   +K+G + + +  +ALI++Y K G +  A  VF+ + 
Sbjct: 307 LSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLT 366

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             D+V  NS+I  +AQN    EAL L++R+K  G   +  T  S+L AC    L+E G Q
Sbjct: 367 ELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQ 426

Query: 295 VHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
           +   + + +H++ L       ++D+  +   LE+A  +   +   DV+ W T+++    +
Sbjct: 427 IFASI-RNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVRNPDVVLWRTLLNSCKIH 485

Query: 351 GYSQEALKLFESMKVSRIKP 370
           G  + A K+    K+  + P
Sbjct: 486 GEVEMAEKVMS--KILELAP 503


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/572 (37%), Positives = 343/572 (59%), Gaps = 6/572 (1%)

Query: 77   YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
            +A + +   +RH +   +  H+   S       F+ N LL+ + K   L++ + LFD+MP
Sbjct: 438  FAAMRRAGYSRHPLHLLQYSHSRSRSTSVL-NVFVNNSLLDFYSKCDCLDDMRRLFDEMP 496

Query: 137  ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQ 193
            ER+ VS+  +I+AY   +     L L   M + G    +  Y+ +L    SL    I +Q
Sbjct: 497  ERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQ 556

Query: 194  LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
            +H  ++ +G  S+  + +ALID+Y+K G L  A+  F+    +  + W ++I G+ QN  
Sbjct: 557  IHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQ 616

Query: 254  VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNA 311
             +EAL L+  M+RAG   D++T +S+++A + LA++ LG Q+H ++++  Y   +   + 
Sbjct: 617  HEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSV 676

Query: 312  LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
            L+DMY KCG L++A+  F  M +++ ISW+ +IS  A  G ++ A+K+FE M      P+
Sbjct: 677  LVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPD 736

Query: 372  YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
             +T + VL ACSH G  ++   +F  MK  Y I P +EHY+C+ID LGR G   +  K++
Sbjct: 737  SVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKML 796

Query: 432  HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
             EMP++ D + W ++L +C++H N +LA  AA K+  ++P D   Y++LSNIYA + +W+
Sbjct: 797  VEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWE 856

Query: 492  EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
            + A V+K MR RG+ KE G SW+E+ ++I++F   D + P ID+I   L  L +++   G
Sbjct: 857  DAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQG 916

Query: 552  YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
            Y PD    L  ++ E K +S++YHSE+LAI F LM+   G  IRI KNL  C DCH   K
Sbjct: 917  YKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIK 976

Query: 612  LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            + +K+ N+ I++RD  R+HHF+DG CSCGDYW
Sbjct: 977  MISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 1008



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 152/294 (51%), Gaps = 9/294 (3%)

Query: 59  MKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118
           ++    MQ  G     + YA ++    +   V   K +H  ++  G   E  L N L++M
Sbjct: 520 LRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDM 579

Query: 119 HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTY 178
           + K  +L+ A+  F    E++ +SWT +I+ Y     +++AL+L   M R G+RP+  T+
Sbjct: 580 YSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATF 639

Query: 179 SAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235
           S++++A  SL ++   RQLH  +I+ G++S VF  S L+D+YAK G L  A   F+EMP 
Sbjct: 640 SSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPE 699

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
           R+ + WN++I  +A   +   A+ +++ M   GF  D  T  SVL AC+   L +   + 
Sbjct: 700 RNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMK- 758

Query: 296 HVHVLKYDHDLIL----NNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMI 344
           + H++K+ + +         ++D   + G       +   M  + D I W++++
Sbjct: 759 YFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSIL 812



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 162/352 (46%), Gaps = 46/352 (13%)

Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
           F +N++L+ +     L  AQ LF   P RN  +WT M+ A+  A     AL L   ML E
Sbjct: 289 FSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGE 348

Query: 170 GVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           GV P+  T + VL      +    LH   IK G ++ VFV + L+D Y K G L  A  V
Sbjct: 349 GVIPDRVTVTTVLNLPGCTV--PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRV 406

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F EM  +D V +N+++ G ++     +AL L+  M+RAG+                    
Sbjct: 407 FLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGY-------------------- 446

Query: 290 ELGTQVHVHVLKYDH---------DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
              ++  +H+L+Y H         ++ +NN+LLD Y KC  L+D   +F  M ++D +S+
Sbjct: 447 ---SRHPLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSY 503

Query: 341 STMISGLAQNGYSQEALKLFESMK---VSRIKPNYITIVGVLFACSHAGFVEDG--WNHF 395
           + +I+  A N  +   L+LF  M+     R    Y T++ V      AG + D       
Sbjct: 504 NVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSV------AGSLPDVHIGKQI 557

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
            +     G+       + +ID+  + G L +A K       E  A++W AL+
Sbjct: 558 HAQLVLLGLASEDLLGNALIDMYSKCGML-DAAKSNFSNRSEKSAISWTALI 608



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 97/193 (50%), Gaps = 5/193 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+  G+R D  T++ +IK   +   +   + +H++++  G++   F  ++L++
Sbjct: 620 ALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVD 679

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L+EA   FD+MPERN +SW  +ISAY        A+++   ML  G  P+  T
Sbjct: 680 MYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVT 739

Query: 178 YSAVLRACDSLII----LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           + +VL AC    +    ++  H    +          + +ID   ++G     + +  EM
Sbjct: 740 FLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEM 799

Query: 234 PTR-DLVVWNSII 245
           P + D ++W SI+
Sbjct: 800 PFKADPIIWTSIL 812



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 15/165 (9%)

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           ++F  + ++  Y+  G+L  A+ +F   P R+   W  ++   A      +AL+L++ M 
Sbjct: 287 NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 346

Query: 266 RAGFAADQSTLTSVLR--ACTGLAL----LELGTQVHVHVLKYDHDLILNNALLDMYCKC 319
             G   D+ T+T+VL    CT  +L    ++ G   HV V          N LLD YCK 
Sbjct: 347 GEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVC---------NTLLDAYCKH 397

Query: 320 GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           G L  A  VF  M  KD ++++ M+ G ++ G   +AL+LF +M+
Sbjct: 398 GLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMR 442


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/657 (34%), Positives = 356/657 (54%), Gaps = 81/657 (12%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M  HG+  DS     L K C    A +  K +H      G + + F+   + +M+++   
Sbjct: 107 MFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGR 166

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           + +A+ +FD+M +++VV+ + ++ AY      ++ + +L  M   G+  N+ +++ +L  
Sbjct: 167 MGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSG 226

Query: 185 --------------------------------------CDSLIILRQLHCGIIKVGFESD 206
                                                  + L + R +H  +IK G   D
Sbjct: 227 FNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKD 286

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRD----------------------------- 237
             V SA+ID+Y K G +     +FN+    +                             
Sbjct: 287 KCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKE 346

Query: 238 ------LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
                 +V W SII G AQN    EAL L++ M+ AG   +  T+ S+L AC  +A L  
Sbjct: 347 QTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGH 406

Query: 292 GTQVH-----VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           G   H     VH+L   H   + +AL+DMY KCG +  +  VF+ M  K+++ W+++++G
Sbjct: 407 GRSTHGFAVRVHLLDNVH---VGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNG 463

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
            + +G ++E + +FES+  +R+KP++I+   +L AC   G  ++GW +FK M + YGI P
Sbjct: 464 FSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKP 523

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
             EHYSCM++LLGRAGKLQEA  LI EMP+EPD+  W ALL +C++  N DLA  AA+K+
Sbjct: 524 RLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKL 583

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
            +L+P++PGTY+LLSNIYA    W EV  +R  M + G+ K PGCSWI+V  +++     
Sbjct: 584 FHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAG 643

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D SHPQID+I + +  + +++   G+ P+ ++ L D+E +++E  +  HSEKLA+VFGL+
Sbjct: 644 DKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLL 703

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +   G  +++ KNLRICGDCH   K  +    + I IRD  R+HHF+DG CSCGD+W
Sbjct: 704 NTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 199/433 (45%), Gaps = 79/433 (18%)

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H  +L  G + + ++   L+  +  ++   +A ++   +P+  + S++++I A   AK+ 
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSAL 213
            +++ +   M   G+ P+      + + C  L    + +Q+HC     G + D FV+ ++
Sbjct: 98  TQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSM 157

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVV--------------------------------- 240
             +Y + G + +A  VF+ M  +D+V                                  
Sbjct: 158 FHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANI 217

Query: 241 --WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
             WN I+ GF ++    EA+ +++++   GF  DQ T++SVL +     +L +G  +H +
Sbjct: 218 VSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGY 277

Query: 299 VLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRM------------------------ 332
           V+K     D  + +A++DMY K G +   +S+F++                         
Sbjct: 278 VIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKA 337

Query: 333 -----------IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
                      ++ +V+SW+++I+G AQNG   EAL+LF  M+V+ +KPN++TI  +L A
Sbjct: 338 LEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHY-SCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
           C +   +  G +      + + +D    H  S +ID+  + G++  +  + + MP + + 
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLD--NVHVGSALIDMYAKCGRINLSQIVFNMMPTK-NL 454

Query: 441 VTWRALLGACKVH 453
           V W +L+    +H
Sbjct: 455 VCWNSLMNGFSMH 467



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 164/349 (46%), Gaps = 47/349 (13%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           + +L  F R  Y ++     + +H +   G   D VT + ++        +   +L+H +
Sbjct: 221 NGILSGFNRSGYHKEAVVMFQKIHHL---GFCPDQVTVSSVLPSVGDSEMLNMGRLIHGY 277

Query: 100 VLSGGFEPETFLVNILLNMHVK-------------FSLLEEA------------------ 128
           V+  G   +  +++ +++M+ K             F ++E                    
Sbjct: 278 VIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKA 337

Query: 129 ----QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
               ++  +Q  E NVVSWT++I+       + +ALEL   M   GV+PN  T  ++L A
Sbjct: 338 LEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C ++  L   R  H   ++V    +V V SALID+YAK G +  ++ VFN MPT++LV W
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCW 457

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           NS++ GF+ +    E +++++ + R     D  + TS+L AC  + L + G + +  ++ 
Sbjct: 458 NSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWK-YFKMMS 516

Query: 302 YDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMIS 345
            ++ +       + ++++  + G L++A  +   M  + D   W  +++
Sbjct: 517 EEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLN 565



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 119/242 (49%), Gaps = 4/242 (1%)

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           Q H  I+K G ++D ++ + LI  Y+      +A+ V   +P   +  ++S+I    +  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH--VLKYDHDLILNN 310
              +++ ++ RM   G   D   L ++ + C  L+  ++G Q+H    V   D D  +  
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           ++  MY +CG + DA  VF RM  KDV++ S ++   A+ G  +E +++   M+ S I+ 
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEA 215

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           N ++  G+L   + +G+ ++    F+ +    G  P +   S ++  +G +  L    +L
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHL-GFCPDQVTVSSVLPSVGDSEMLNMG-RL 273

Query: 431 IH 432
           IH
Sbjct: 274 IH 275



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 103/209 (49%), Gaps = 11/209 (5%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A++    MQ  GV+ + VT   ++  C    A+   +  H   +         + + L+
Sbjct: 371 EALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALI 430

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL-IF--MLREGVRP 173
           +M+ K   +  +Q++F+ MP +N+V W ++++ +    M+ KA E++ IF  ++R  ++P
Sbjct: 431 DMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGF---SMHGKAKEVMSIFESLMRTRLKP 487

Query: 174 NMFTYSAVLRACDSLIIL----RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           +  +++++L AC  + +     +       + G +  +   S ++++  + G+L+ A  +
Sbjct: 488 DFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDL 547

Query: 230 FNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
             EMP   D  VW +++      ++VD A
Sbjct: 548 IKEMPFEPDSCVWGALLNSCRLQNNVDLA 576


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/623 (36%), Positives = 357/623 (57%), Gaps = 18/623 (2%)

Query: 31  SCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAV 90
           S N ++   ++ L +  + C      +A+     M  HG R ++ T+   +K C A    
Sbjct: 9   SMNALSTPWNTQLRELAKRC---QFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLP 65

Query: 91  EEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ--MPERNVVSWTTMIS 148
                 H  +   G   E F+   L++M+ K SL++ A+ +F++     +  V +  ++S
Sbjct: 66  ILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVS 125

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFES 205
            Y       +A+ L   M  EGV  N  T   ++ AC S I L     LHC  +K GF+S
Sbjct: 126 GYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDS 185

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           DV V +  I +Y K G +  A+ +F+EMP + L+ WN+++ G+AQN      L LY+ M 
Sbjct: 186 DVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMD 245

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLE 323
             G   D  TL  VL +C  L    +G +V   +    +  +  LNNAL++MY +CG+L 
Sbjct: 246 MNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLT 305

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
            A +VF  M ++ ++SW+ +I G   +G+ + A++LF+ M  S I+P+    V VL ACS
Sbjct: 306 KAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACS 365

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
           HAG  + G  +FK MK+ Y ++PG EHYSCM+DLLGRAG+L+EA  LI  MP +PD   W
Sbjct: 366 HAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVW 425

Query: 444 RALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503
            ALLGACK+H+N +LA  A ++++ L+P++ G Y+LLSNIY+N+     V  +R  M+ +
Sbjct: 426 GALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEK 485

Query: 504 GITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDL 563
            + K+PGCS++E+  ++H F V D +H Q D+I + L+ L   ++     P+     +D 
Sbjct: 486 KLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPE-----KDN 540

Query: 564 EGEQKEDS---IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQT 620
             E  +D    +  HSEKLA+ FGL++ T G  + I KNLRIC DCH F K+ +K+ ++ 
Sbjct: 541 REESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQ 600

Query: 621 IVIRDPIRYHHFQDGNCSCGDYW 643
           + +RD  R+HHF++G+CSC DYW
Sbjct: 601 LTVRDATRFHHFRNGSCSCKDYW 623


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/479 (44%), Positives = 306/479 (63%), Gaps = 8/479 (1%)

Query: 173  PNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
            P+  TY  +++AC  L+ LR+   LH    K GF + VFV+++L+ +Y   G   +A  V
Sbjct: 802  PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKV 861

Query: 230  FNEMPTR--DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            F+EMP R  +LV WNS++  FA N   +E L ++  M    FA D  T+ SVL AC    
Sbjct: 862  FDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFG 921

Query: 288  LLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMI 344
             L LG +VHV+V K     +  ++NAL+D+Y KCGS+ DA  +F  M + + V+SW+++I
Sbjct: 922  ALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLI 981

Query: 345  SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI 404
             GLA NG+ +EAL+LF  M+  ++ P  IT+VGVL+ACSH G V+DG+ +F  MK+ YGI
Sbjct: 982  VGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGI 1041

Query: 405  DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAK 464
             P  EH  CM+DLLGRAG+++EA   I  MP EP+AV WR LLG+C +H+  +L   A +
Sbjct: 1042 SPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWE 1101

Query: 465  KILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFN 524
            +++ LDP   G Y+LLSN+YA    W +V  +RKTM    + K PG S +E+   ++ F 
Sbjct: 1102 RLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFV 1161

Query: 525  VADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFG 584
            + D SHP+ ++I + L  + ++L   GY P T+ VL D+E E+KE ++ YHSE+LAI F 
Sbjct: 1162 MGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFA 1221

Query: 585  LMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            L+    G  IRI KNLR+CGDCH    L +K+ ++ I++RD  R+HHFQ G CSC DYW
Sbjct: 1222 LLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 1280



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 153/306 (50%), Gaps = 12/306 (3%)

Query: 56   PRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNIL 115
            PR   A+   +      D+ TY  LI+ C    A+ E + +H      GF    F+ N L
Sbjct: 786  PRPRVALELHRRRLALPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSL 845

Query: 116  LNMHVKFSLLEEAQVLFDQMP--ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            ++++    L E A  +FD+MP   RN+VSW +M++++      ++ L +   ML     P
Sbjct: 846  VHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAP 905

Query: 174  NMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
            + FT  +VL AC    +L + R++H  + KVG   +  V +ALID+YAK G + +A  +F
Sbjct: 906  DGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIF 965

Query: 231  NEMPT-RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
             EM   R +V W S+I G A N    EAL L+  M+R      + T+  VL AC+   L+
Sbjct: 966  EEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLV 1025

Query: 290  ELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMI 344
            + G + +   +K D+ +         ++D+  + G +E+A      M ++ + + W T++
Sbjct: 1026 DDGFR-YFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLL 1084

Query: 345  SGLAQN 350
               A +
Sbjct: 1085 GSCAMH 1090


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/591 (36%), Positives = 353/591 (59%), Gaps = 6/591 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+    AM+  G+ A   T++ ++        +   + VH  +++       F+ N LL+
Sbjct: 225 ALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHG-LVARATSSNVFVNNSLLD 283

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            + K   L+E + LF +M ER+ VS+  MI+ Y   +     L L   M           
Sbjct: 284 FYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALP 343

Query: 178 YSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           Y+++L    S+    I +Q+H  ++ +G  S+  V +ALID+Y+K G L  A+  F    
Sbjct: 344 YASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKN 403

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            +  V W ++I G  QN   +EAL L+  M+RAG + D++T +S ++A + LA++ LG Q
Sbjct: 404 DKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQ 463

Query: 295 VHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H ++++  H   +   +ALLDMY KCG L++A+  F  M +++ ISW+ +IS  A  G 
Sbjct: 464 LHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQ 523

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
           ++ A+K+FE M     KP+ +T + VL ACSH G  E+   +F+ M+  YGI P +EHYS
Sbjct: 524 AKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYS 583

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           C+ID LGR G+  +  +++ EMP+E D + W ++L +C+ H N DLA  AA+K+ ++   
Sbjct: 584 CVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGST 643

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           D   Y++LSNI+A + KW++ A V+K MR RG+ KE G SW+EV  ++++F+  D ++P 
Sbjct: 644 DATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQTNPM 703

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
           I +I   L+ L +++   GY PDT+  LQ ++ + K +S++YHSE+LAI F L++   G 
Sbjct: 704 ITEIKDELERLYKEMDKQGYKPDTSCTLQQVDDDIKLESLKYHSERLAIAFALINTPPGT 763

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            IR+ KNL  C DCH+  K+ +K+ N+ I++RD  R+HHF+DG CSCGDYW
Sbjct: 764 PIRVMKNLSACVDCHSAIKMMSKIVNRDIIVRDSSRFHHFKDGFCSCGDYW 814



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/394 (30%), Positives = 189/394 (47%), Gaps = 52/394 (13%)

Query: 104 GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN------------------------ 139
           GF+P T+ +N+LL+  +    L +A+ LFDQMP RN                        
Sbjct: 29  GFDPATYRLNLLLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHL 88

Query: 140 ----------VVSWTTMISAYCDAK--MNDKALELLIFMLREGVRPNMFTYSAVLR---- 183
                      V+WT MI A+  A       A+ L   MLREGV P+  T + VL     
Sbjct: 89  FLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPA 148

Query: 184 --ACDSLIILRQLHCGIIKVGF-ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
                + II+  LH   +K+G   S+V V + L+D Y K G L  A  VF EMP RD V 
Sbjct: 149 SGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVT 208

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           +N+++ G ++     EAL+L+  M+R G AA + T ++VL   TG+  L LG QVH  V 
Sbjct: 209 YNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVA 268

Query: 301 K-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
           +    ++ +NN+LLD Y KC  L++   +F  MI++D +S++ MI+G A N  +   L+L
Sbjct: 269 RATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRL 328

Query: 360 F---ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           F   +S+   R    Y +++ V  +  H G  +       +     G+       + +ID
Sbjct: 329 FREMQSLSFDRQALPYASLLSVAGSVPHIGIGK----QIHAQLVLLGLSSEDLVGNALID 384

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           +  + G L +A K       +   V+W A++  C
Sbjct: 385 MYSKCGML-DAAKTNFINKNDKTGVSWTAMITGC 417



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 173/363 (47%), Gaps = 18/363 (4%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           + + R     ++    MQ       ++ YA L+    +   +   K +H  ++  G   E
Sbjct: 316 YAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSE 375

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             + N L++M+ K  +L+ A+  F    ++  VSWT MI+        ++AL+L   M R
Sbjct: 376 DLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRR 435

Query: 169 EGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
            G+ P+  T+S+ ++A  +L ++   RQLH  +I+ G  S VF  SAL+D+Y K G L  
Sbjct: 436 AGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDE 495

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A   F+EMP R+ + WN++I  +A       A+ +++ M   GF  D  T  SVL AC+ 
Sbjct: 496 ALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSH 555

Query: 286 LALLELGTQVHVHVLKYDHDLIL----NNALLDMYCKCGSLEDAMSVFSRM-IQKDVISW 340
             L E   + +  +++Y++ +       + ++D   + G  +    +   M  + D I W
Sbjct: 556 NGLAEECMK-YFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIW 614

Query: 341 STMISGLAQNGYSQ----EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
           S+++     +G        A KLF SM  +   P Y+ I+  +FA   AG  ED     K
Sbjct: 615 SSILHSCRTHGNQDLARVAAEKLF-SMGSTDATP-YV-ILSNIFA--KAGKWEDAAGVKK 669

Query: 397 SMK 399
            M+
Sbjct: 670 IMR 672


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/552 (38%), Positives = 333/552 (60%), Gaps = 5/552 (0%)

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H + +  G     ++ + +L+M+ + + ++EA  +FD +   NV ++ +MI+ + D    
Sbjct: 136 HGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQM 195

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSAL 213
           D +  ++  M+R   + +  +Y AVL  C S   +++  Q+H   +K   E +V+V SAL
Sbjct: 196 DGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSAL 255

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           +D+Y K      A  VF  +P +++V W +I+  + QN   ++AL L+  M+  G   ++
Sbjct: 256 VDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNE 315

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSR 331
            T    L +C GLA L+ G  +    +K  H  +L   NAL++MY K GS+EDA  VF  
Sbjct: 316 FTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLS 375

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           M  +DV+SW+++I G A +G ++EA++ F  M  +   P+Y+T +GVL AC+  G V++G
Sbjct: 376 MPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEG 435

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
           + +   M K  G+ PG+EHY+CM+ LL R G+L EA + I       D V WR+LL +C+
Sbjct: 436 FYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQ 495

Query: 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGC 511
           V+RN  L    A++I  L P+D GTY+LLSN+YA + +WD V +VR+ MR  G+ KEPG 
Sbjct: 496 VYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKANRWDGVVKVRRLMRELGVRKEPGV 555

Query: 512 SWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDS 571
           SWI+V  ++H F   D  HP +++I K L+ LI K+  +GY P+    L D+E EQKE+ 
Sbjct: 556 SWIQVGSEVHVFTSEDKKHPYMEQITKKLQELIDKIKVIGYVPNIAVALHDVEDEQKEEH 615

Query: 572 IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHH 631
           + YHSEKLA+ FGL+   +G+ IRI KN+RIC DCH   KL +    + IV+RD +R+H 
Sbjct: 616 LMYHSEKLALAFGLIRTPKGEAIRIMKNVRICDDCHVAIKLISLATGRRIVVRDTVRFHC 675

Query: 632 FQDGNCSCGDYW 643
            +DG CSC DYW
Sbjct: 676 IEDGVCSCDDYW 687



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/285 (31%), Positives = 146/285 (51%), Gaps = 17/285 (5%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D V+Y  ++  C +   V     VH   L    E   ++ + L++M+ K     EA  +F
Sbjct: 213 DHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVF 272

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192
           + +PE+N+VSWT +++AY   ++ + AL+L + M  EGVRPN FTY+  L +C  L  L+
Sbjct: 273 EVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLK 332

Query: 193 Q---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
               L    +K G    + V +AL+++Y+K G + +A  VF  MP RD+V WNSII G+A
Sbjct: 333 NGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYA 392

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG--------TQVHVHVLK 301
            +    EA+  +  M  A       T   VL AC  L L++ G         +V V   K
Sbjct: 393 HHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGK 452

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMS-VFSRMIQKDVISWSTMIS 345
             +       ++ + C+ G L++A   + S  I  DV++W +++S
Sbjct: 453 EHY-----TCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLS 492



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 180/343 (52%), Gaps = 16/343 (4%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI---FMLRE 169
           N L+ ++VK   L  A+ +FD MP RN VS   ++S Y  +  +  AL LL    F L E
Sbjct: 54  NNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYASSGRHRDALALLRVADFGLNE 113

Query: 170 GVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
            V  +    +A +R+ D   + RQ H   IK G     +V SA++ +Y +   +  A  V
Sbjct: 114 YVLSSAVAATAHVRSYD---MGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKV 170

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F+ + + ++  +NS+I GF     +D + ++ + M R     D  +  +VL  C     +
Sbjct: 171 FDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKEV 230

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
            LG+QVH   LK   + ++ + +AL+DMY KC    +A  VF  + +K+++SW+ +++  
Sbjct: 231 VLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAY 290

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK--SMKK-FYGI 404
            QN   ++AL+LF  M++  ++PN  T    L +C+    +++G N     +MK   +G+
Sbjct: 291 TQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNG-NALGACTMKTGHWGL 349

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
            P     + ++++  ++G +++A ++   MP   D V+W +++
Sbjct: 350 LP---VCNALMNMYSKSGSVEDARRVFLSMPCR-DVVSWNSII 388



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 90/193 (46%), Gaps = 5/193 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+  GVR +  TYA  +  C     ++    +    +  G      + N L+N
Sbjct: 299 ALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMN 358

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +E+A+ +F  MP R+VVSW ++I  Y       +A+E    ML     P+  T
Sbjct: 359 MYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVT 418

Query: 178 YSAVLRACDSLIILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE-CVFNE 232
           +  VL AC  L ++ +    L+  + +VG +      + ++ +  ++G L  AE  + + 
Sbjct: 419 FIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAERFIESN 478

Query: 233 MPTRDLVVWNSII 245
               D+V W S++
Sbjct: 479 CIGTDVVAWRSLL 491



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 4/97 (4%)

Query: 289 LELGTQVHVHVLKYDH-DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
           L LG  VH  V++    D++  N L+ +Y KCG L  A  VF  M  ++ +S + ++SG 
Sbjct: 32  LSLGKAVHARVVRAARFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGY 91

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           A +G  ++AL L   ++V+    N   +   + A +H
Sbjct: 92  ASSGRHRDALAL---LRVADFGLNEYVLSSAVAATAH 125


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/553 (37%), Positives = 343/553 (62%), Gaps = 6/553 (1%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H +++  G      + N L+N + K  L  +++  F+  P+++  +W+++IS +   ++
Sbjct: 37  LHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSATTWSSIISCFAQNEL 96

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSA 212
              +LE L  M+   +RP+     +  ++C  L    I + +HC  +K G+++DVFV S+
Sbjct: 97  PWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHCLSMKTGYDADVFVGSS 156

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           L+D+YAK GE+  A  +F+EMP R++V W+ ++ G+AQ  + +EAL L+K       A +
Sbjct: 157 LVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVN 216

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
             + ++V+  C    LLELG Q+    +K  +D    + ++L+ +Y KCG LE A  VF 
Sbjct: 217 DYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFD 276

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            +  +++  W+ M+   AQ+ ++Q+ ++LF+ MK+S +KPN+IT + VL ACSHAG V++
Sbjct: 277 EVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDE 336

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G  +F  MK+   I+P  +HY+ ++D+LGRAGKL+EA++++  MP +P    W ALL +C
Sbjct: 337 GKYYFDLMKE-SRIEPTDKHYASLVDMLGRAGKLEEALEIVTNMPIDPTESVWGALLTSC 395

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
            +H+NT+LA  AA K+  L P   G +I LSN YA   ++++ A+ RK +R RG  KE G
Sbjct: 396 TIHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETG 455

Query: 511 CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKED 570
            SW+E   ++H F   +  H +  +I + L  L +++   GY  DT+YVL++++G++K  
Sbjct: 456 LSWVEERNKVHTFAAGERRHERSKEIYEKLAELGEEMEKAGYVADTSYVLREVDGDEKNQ 515

Query: 571 SIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYH 630
           +I+YHSE+LAI FGL++    + IR+ KNLR+CGDCH   K  +    + I++RD  R+H
Sbjct: 516 TIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSICTRRVIIVRDNNRFH 575

Query: 631 HFQDGNCSCGDYW 643
            F+DG CSC DYW
Sbjct: 576 RFEDGKCSCNDYW 588



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 172/337 (51%), Gaps = 26/337 (7%)

Query: 50  CY-QRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           C+ Q +LP  +++ +  M    +R D        K C      +  K VH   +  G++ 
Sbjct: 90  CFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHCLSMKTGYDA 149

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           + F+ + L++M+ K   +  A+ +FD+MP RNVV+W+ M+  Y     N++AL L    L
Sbjct: 150 DVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEAL 209

Query: 168 REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
            E +  N +++S V+  C +  +L   RQ+    IK  F+S  FV S+L+ +Y+K G+L 
Sbjct: 210 FENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLE 269

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
            A  VF+E+P R+L +WN+++   AQ+S   + + L+KRMK +G   +  T  +VL AC+
Sbjct: 270 GAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACS 329

Query: 285 GLALLELGTQVHVHVLKYDHDLILNN----------ALLDMYCKCGSLEDAMSVFSRM-I 333
              L++ G        KY  DL+  +          +L+DM  + G LE+A+ + + M I
Sbjct: 330 HAGLVDEG--------KYYFDLMKESRIEPTDKHYASLVDMLGRAGKLEEALEIVTNMPI 381

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
                 W  +++    +  ++  L  F + KV  + P
Sbjct: 382 DPTESVWGALLTSCTIHKNTE--LAAFAADKVFELGP 416


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/689 (33%), Positives = 375/689 (54%), Gaps = 84/689 (12%)

Query: 13  KPSSQARQFSLTITPPVASCNTITRNSSSL---LDDFT----RFCYQRDLPRAMKAMHAM 65
           +PSS+    S  +    A+  T    S ++   + D+     RFC   +L RAM+ ++  
Sbjct: 35  RPSSKTPLVSSNLYHSCATIGTSVLPSETIDCKITDYNIEICRFCELGNLRRAMELIN-- 92

Query: 66  QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE------------------- 106
           Q      +  TY  +++ C    ++++ + +H+ + S   E                   
Sbjct: 93  QSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDL 152

Query: 107 ------------PETFLVNILLNMHVKFS------------------LLEEAQVLFDQMP 136
                        + FL N+L+N + K                     +E A+ LFD++ 
Sbjct: 153 REGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELG 212

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHC 196
           +R+V+SW +MIS Y    +++K L+L   ML  G+  ++ T  +V               
Sbjct: 213 DRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV--------------- 257

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
                    ++ + + L+D+Y+K G L +A  VF  M  R +V W S+I G+A+    D 
Sbjct: 258 ---------ELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDM 308

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLD 314
           ++ L+  M++     +  T+  +L AC  LA LE G ++H H+L+  +  D  + NAL+D
Sbjct: 309 SVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVD 368

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           MY KCG+L  A  +F  + +KD++SW+ MI+G   +GY  EA+  F  M+ S I+P+ ++
Sbjct: 369 MYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVS 428

Query: 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
            + +L+ACSH+G +++GW  F  M+    I+P  EHY+C++DLL RAG L +A K I  M
Sbjct: 429 FISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMM 488

Query: 435 PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494
           P EPDA  W ALL  C+++ +  LA   A+ +  L+P++ G Y+LL+NIYA ++KW+EV 
Sbjct: 489 PIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVK 548

Query: 495 EVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAP 554
           ++R+ +  RG+ K PGCSWIE+  ++H F   DSSHP  +KI   LK    ++   G+ P
Sbjct: 549 KLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFP 608

Query: 555 DTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTA 614
              Y L   +  +KE ++  HSEK+A+ FG++SL  GKT+R+ KNLR+CGDCH  AK  +
Sbjct: 609 KMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMS 668

Query: 615 KMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KM  + I++RD  R+HHF+DG+CSC  +W
Sbjct: 669 KMVKRDIILRDSNRFHHFKDGSCSCRGHW 697


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/618 (37%), Positives = 351/618 (56%), Gaps = 32/618 (5%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL-SGGFEPETFLVNILL 116
           A++ ++ M   GVR D VT+A  +  C     +   + VH  VL        +F+ + L+
Sbjct: 244 AVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALV 303

Query: 117 NMHVKFSLLEEAQVLFDQMPE--RNVVSWTTMISAYCD-AKMNDKALELLIFMLRE-GVR 172
           +M+     +  A+ +FD +PE  R +  W  MI  Y     M+++A+EL   M  E G  
Sbjct: 304 DMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCA 363

Query: 173 PNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P+  T + VL AC    +      +H  ++K    S+ FV++AL+D+YA+LG +  A  +
Sbjct: 364 PSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTI 423

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA---------DQS------ 274
           F  +  RD+V WN++I G      + EA  L + M+    AA         D S      
Sbjct: 424 FAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRC 483

Query: 275 -----TLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMS 327
                TL ++L  C  LA    G ++H + +++  + DL + +AL+DMY KCG L  A +
Sbjct: 484 MPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARA 543

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS-RIKPNYITIVGVLFACSHAG 386
           VF R+ +++VI+W+ +I     +G   EAL LF+ M  +    PN +T +  L ACSH+G
Sbjct: 544 VFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSG 603

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRA 445
            V+ G   F+ MK+ YG +P    ++C++D+LGRAG+L EA  +I  M P E     W  
Sbjct: 604 LVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWST 663

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           +LGAC++HRN  L   AA+++  L+P +   Y+LL NIY+ +  W+   EVR  MR RG+
Sbjct: 664 MLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGV 723

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            KEPGCSWIE++  IH F   +S+HP+  +++ H+  L +++   GY PDT+ VL D++ 
Sbjct: 724 AKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHMDALWERMRREGYVPDTSCVLHDVDE 783

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
            +K   ++YHSEKLAI FGL+    G TIR+ KNLR+C DCH  AK  ++M  + IV+RD
Sbjct: 784 AEKAAMLRYHSEKLAIAFGLLRAPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRD 843

Query: 626 PIRYHHFQDGNCSCGDYW 643
             R+HHF+DG CSCGDYW
Sbjct: 844 VRRFHHFRDGTCSCGDYW 861



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 178/372 (47%), Gaps = 36/372 (9%)

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPE--RNVVSWTTMISAYCDAKMNDKALELLI 164
           P   + N LL  + +   L+ A  LF   P   R+ VS+ ++ISA C  +    AL+ L 
Sbjct: 83  PTPAVSNALLTAYARCGDLDAALALFAATPPDLRDAVSYNSLISALCLFRRWGHALDALR 142

Query: 165 FMLREGVRPNMFTYSAVLRACDSLI-----ILRQLHCGIIKVGF---ESDVFVRSALIDI 216
            ML +    + FT  +VL AC  L      + R+ H   +K GF     + F  +AL+ +
Sbjct: 143 DMLADH-EVSSFTLVSVLLACSHLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSM 201

Query: 217 YAKLGELRNAECVF--NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           YA+LG + +A+ +F  +     DLV WN++I    Q    +EA+ +   M   G   D  
Sbjct: 202 YARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGV 261

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFS 330
           T  S L AC+ L LL +G +VH  VLK D DL  N    +AL+DMY     +  A  VF 
Sbjct: 262 TFASALPACSRLELLGVGREVHAFVLK-DDDLAANSFVASALVDMYASNEQVSHARRVFD 320

Query: 331 RMIQ--KDVISWSTMISGLAQN-GYSQEALKLFESMKV-SRIKPNYITIVGVLFACSHAG 386
            + +  + +  W+ MI G AQ+ G  +EA++LF  M+  +   P+  T+ GVL AC+ + 
Sbjct: 321 MVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSE 380

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYS------CMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
                   F   +  +G    R+  S       ++D+  R G++ EA   I  M    D 
Sbjct: 381 V-------FTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEA-HTIFAMIDLRDI 432

Query: 441 VTWRALLGACKV 452
           V+W  L+  C V
Sbjct: 433 VSWNTLITGCIV 444


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/601 (35%), Positives = 356/601 (59%), Gaps = 6/601 (0%)

Query: 49  FCYQRDLPRAMKAMHAMQCH-GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
            C +  +  A      MQ    +  + VT   ++  CL    +   K +H + +  GF+ 
Sbjct: 210 LCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQY 269

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           +  + N  +  + K  +L  A+ +F  M  + V SW  +I          KAL L I M 
Sbjct: 270 DELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMT 329

Query: 168 REGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
             G+ P+ FT  ++L A   L  LR   ++H  +++ G E D F+  +L+ +Y   GE  
Sbjct: 330 YSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESS 389

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
           +A  +F+ M  +  V WN++I G++QN   ++AL L++++   GF      + SVL AC+
Sbjct: 390 SARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACS 449

Query: 285 GLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
             + L LG + H + LK     D+ +  + +DMY K G ++++ SVF  +  KD+ SW+ 
Sbjct: 450 QQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNA 509

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           +I+    +G  +E+++LFE M+     P+  T +G+L  CSHAG VE+G  +F  M+ F+
Sbjct: 510 IIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFH 569

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           GI+P  EHY+C++D+LGRAG+L +A++L+HEMP +PD+  W +LL  C+     ++    
Sbjct: 570 GIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIV 629

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A+K+L L+P++   Y+ LSN+YA S +WD+V  VR+ ++  G+ K+ GCSWIE+  ++H+
Sbjct: 630 AEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHS 689

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F   D+  PQ  +++   + L +K+  +GY P+T+ VL D++ E+K + ++ HSEKLAI 
Sbjct: 690 FVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEEKKIEKLRGHSEKLAIC 749

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           FGL++ T+G T+RI KNLRIC DCH  +K  +++  + I+IRD  R+HHF+DG CSCGDY
Sbjct: 750 FGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREIIIRDNKRFHHFKDGLCSCGDY 809

Query: 643 W 643
           W
Sbjct: 810 W 810



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 135/429 (31%), Positives = 213/429 (49%), Gaps = 13/429 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           +S++  F+   + +D    +  M A +  G+  D  T   ++  C     V+    +H  
Sbjct: 101 NSIISGFSENGFSKDCFDMLVEMMAGE-EGLLPDIATLVTVLPVCAREVDVQMGIRIHGL 159

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
            +  G   +  + N L++M+ K   L EAQ+LFD+   +N VSW TMI   C      +A
Sbjct: 160 AVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEA 219

Query: 160 LELLIFM-LREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALID 215
             L   M ++E +  N  T   +L AC     L  L++LH   I+ GF+ D  V +  + 
Sbjct: 220 FNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVA 279

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
            YAK G L  AE VF  M T+ +  WN++IGG AQN D  +ALNLY +M  +G   D  T
Sbjct: 280 AYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFT 339

Query: 276 LTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
           + S+L A   L  L  G +VH  VL++  + D  +  +LL +Y  CG    A  +F  M 
Sbjct: 340 IGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGME 399

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-W 392
           +K  +SW+ MISG +QNG  ++AL LF  +     +P+ I +V VL ACS    +  G  
Sbjct: 400 EKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKE 459

Query: 393 NHFKSMKKFYGIDPGREHYSC-MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
            H  ++K     D      +C  ID+  ++G ++E+  +   +    D  +W A++ A  
Sbjct: 460 THCYALKALLMEDV---FVACSTIDMYAKSGCIKESRSVFDGLK-NKDLASWNAIIAAYG 515

Query: 452 VHRNTDLAI 460
           VH + + +I
Sbjct: 516 VHGDGEESI 524



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 222/436 (50%), Gaps = 31/436 (7%)

Query: 72  ADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVL 131
           AD+ T+  +IK C         +++H  V+  G   + F+ N L+ M+ KF  ++ A  +
Sbjct: 29  ADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKV 88

Query: 132 FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML--REGVRPNMFTYSAVLRACDSLI 189
           F  MP RN+VSW ++IS + +   +    ++L+ M+   EG+ P++ T   VL  C   +
Sbjct: 89  FHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREV 148

Query: 190 ILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            ++   ++H   +K+G   DV V ++L+D+Y+K G L  A+ +F++   ++ V WN++IG
Sbjct: 149 DVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIG 208

Query: 247 GFAQNSDVDEALNLYKRMK-RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YD 303
           G      + EA NL++ M+ +     ++ T+ ++L AC  ++ L    ++H + ++  + 
Sbjct: 209 GLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQ 268

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
           +D ++ N  +  Y KCG L  A  VF  M  K V SW+ +I G AQNG  ++AL L+  M
Sbjct: 269 YDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQM 328

Query: 364 KVSRIKPNYITIVGVLFACSHA----------GFVEDGWNHFKSMKKFYGIDPGREHYSC 413
             S + P++ TI  +L A +H           GFV     H   +  F GI         
Sbjct: 329 TYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFV---LRHGLEIDSFIGIS-------- 377

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           ++ L    G+   A +L+ +   E  +V+W A++     +   + A+   +K+++ D   
Sbjct: 378 LLSLYIHCGESSSA-RLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVS-DGFQ 435

Query: 474 PGTYILLSNIYANSQK 489
           P    ++S + A SQ+
Sbjct: 436 PSDIAVVSVLGACSQQ 451



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 109/206 (52%), Gaps = 9/206 (4%)

Query: 250 QNSDVDEALNLY-KRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDL 306
           +N    +A++++ K +    F AD  T   V++ACTG     LG  +H  V+K     D+
Sbjct: 7   RNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDV 66

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
            + NAL+ MY K G ++ A+ VF  M  ++++SW+++ISG ++NG+S++   +   M   
Sbjct: 67  FVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAG 126

Query: 367 R--IKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
              + P+  T+V VL  C+    V+ G   H  ++K   G+       + ++D+  + G 
Sbjct: 127 EEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVK--LGLSEDVRVNNSLVDMYSKCGY 184

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGA 449
           L EA +++ +     +AV+W  ++G 
Sbjct: 185 LTEA-QMLFDKNNRKNAVSWNTMIGG 209


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/558 (40%), Positives = 331/558 (59%), Gaps = 18/558 (3%)

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           + SG F  + F  + LL+M+   S   +A+  FD++P  N V  T M S Y    +   +
Sbjct: 116 IRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYVRNNLVYPS 175

Query: 160 LELLIFMLREGVRPNM--------FTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRS 211
           L L   ++  G    +        F+ SA +  C    I   LH  ++K G + D  V +
Sbjct: 176 LALFRKLIASGSATAVDEAAALVAFSASARIPDCG---ITSSLHALVVKTGLDGDAGVVN 232

Query: 212 ALIDIYAKLG--ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR--A 267
            ++D YAK G  +L  A  VF+ M  +D+V WNS+I  +AQN    +AL LY++M     
Sbjct: 233 TMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADALGLYRKMLNVSG 291

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDA 325
               +  TL+++L AC     ++ G  +H  V++   + ++ +  +++DMY KCG +E A
Sbjct: 292 SIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMA 351

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
              F ++ +K+++SWS MI+G   +G+ QEAL +F  M  S   PNYIT + VL ACSHA
Sbjct: 352 RKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHA 411

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G ++ G   + +MKK +GI+PG EHY CM+DLLGRAG L EA  LI EM  +PDA  W A
Sbjct: 412 GLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGA 471

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LL AC++H+N +LA  +AK++  LD  + G Y+LLSNIYA +  W +V  +R  ++ RGI
Sbjct: 472 LLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVLVKTRGI 531

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            K PG S +E+  + H F V D SHPQ  +I  +L  L++K+   GY P+T  VL DL+ 
Sbjct: 532 EKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSVLHDLDE 591

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           E+K  ++  HSEKLAI F LM+   G  I + KNLR+C DCHT  KL  K+  + I++RD
Sbjct: 592 EEKASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQREIIVRD 651

Query: 626 PIRYHHFQDGNCSCGDYW 643
             R+HHF+DG+CSCGDYW
Sbjct: 652 LQRFHHFKDGSCSCGDYW 669



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 99/200 (49%), Gaps = 5/200 (2%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           ++ ++VT + ++  C     ++  K +HN V+  G E   ++   +++M+ K   +E A+
Sbjct: 293 IKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMAR 352

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
             F ++ E+N++SW+ MI+ Y       +AL++   M R G  PN  T+ +VL AC    
Sbjct: 353 KAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAG 412

Query: 190 IL---RQLHCGIIK-VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSI 244
           +L   R  +  + K  G E  V     ++D+  + G L  A  +  EM  + D  +W ++
Sbjct: 413 LLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGAL 472

Query: 245 IGGFAQNSDVDEALNLYKRM 264
           +     + +V+ A    KR+
Sbjct: 473 LSACRIHKNVELAEISAKRL 492


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/537 (40%), Positives = 323/537 (60%), Gaps = 6/537 (1%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           NIL+N +V+   L  A+ +FD+MP+R + +W  MI+     + N++ L L   M   G  
Sbjct: 29  NILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMHGLGFS 88

Query: 173 PNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P+ +T  +V        S+ I +Q+H   IK G E D+ V S+L  +Y + G+L++ E V
Sbjct: 89  PDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIV 148

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
              MP R+LV WN++I G AQN   +  L LYK MK +G   ++ T  +VL +C+ LA+ 
Sbjct: 149 IRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIR 208

Query: 290 ELGTQVHVHVLKYDHDLILNNA--LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
             G Q+H   +K     ++     L+ MY KCG L DA   FS    +D + WS+MIS  
Sbjct: 209 GQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAY 268

Query: 348 AQNGYSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
             +G   EA+KLF SM + + ++ N +  + +L+ACSH+G  + G   F  M + YG  P
Sbjct: 269 GFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKP 328

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
           G +HY+C++DLLGRAG L +A  +I  MP +PD V W+ LL AC +H+N ++A    K+I
Sbjct: 329 GLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEI 388

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
           L +DP D   Y+LL+N++A++++W +V+EVRK+MR + + KE G SW E   ++H F + 
Sbjct: 389 LEIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMG 448

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D S  +  +I  +LK L  ++   GY PDT  VL D++ E+KE  +  HSEKLA+ F LM
Sbjct: 449 DRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALM 508

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            L +G  IRI KNLR+C DCH   K  + + N+ I +RD  R+HHF +G CSCGDYW
Sbjct: 509 ILPEGAPIRIIKNLRVCSDCHVAFKYISVIMNREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 171/354 (48%), Gaps = 14/354 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++    +F Y  +     + MH +   G   D  T   +        +V   + +H +
Sbjct: 60  NAMIAGLIQFEYNEEGLSLFREMHGL---GFSPDEYTLGSVFSGSAGLRSVSIGQQIHGY 116

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
            +  G E +  + + L +M+++   L++ +++   MP RN+V+W T+I         +  
Sbjct: 117 AIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETV 176

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDI 216
           L L   M   G RPN  T+  VL +C  L I    +Q+H   IK+G  S V V S+LI +
Sbjct: 177 LYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISM 236

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQST 275
           Y+K G L +A   F+E    D V+W+S+I  +  +   DEA+ L+  M ++     ++  
Sbjct: 237 YSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVA 296

Query: 276 LTSVLRACTGLALLELGTQV-HVHVLKYDHDLILNN--ALLDMYCKCGSLEDAMSVFSRM 332
             ++L AC+   L + G ++  + V KY     L +   ++D+  + G L+ A ++   M
Sbjct: 297 FLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSM 356

Query: 333 -IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
            I+ D + W T++S    +  ++ A K+F+  ++  I PN  +   VL A  HA
Sbjct: 357 PIKPDPVIWKTLLSACNIHKNAEMAQKVFK--EILEIDPN-DSACYVLLANVHA 407



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 4/161 (2%)

Query: 288 LLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
           L +L + V ++      + + +N L++ Y + G L  A  VF  M  + + +W+ MI+GL
Sbjct: 7   LGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGL 66

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDP 406
            Q  Y++E L LF  M      P+  T+  V    +    V  G   H  ++K  YG++ 
Sbjct: 67  IQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIK--YGLEL 124

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
                S +  +  R GKLQ+   +I  MP   + V W  L+
Sbjct: 125 DLVVNSSLAHMYMRNGKLQDGEIVIRSMPVR-NLVAWNTLI 164


>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 662

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/595 (38%), Positives = 360/595 (60%), Gaps = 24/595 (4%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE-PETFLVNIL 115
            A++    M   GV  D+ T++ + K         E +  H   +  GFE  + F+   +
Sbjct: 84  EAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGI 143

Query: 116 LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
           ++M+ KF  +++A+ +FD++ +++VV +T +I  Y    ++ +ALE+   M+   ++PN 
Sbjct: 144 VDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQHGLDGEALEVFEDMVGSRIKPNE 203

Query: 176 FTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           +T ++VL +C +L  L   + +H  ++K G ES V  +++L+ +Y+K   + ++  VFN 
Sbjct: 204 YTLASVLVSCGNLGDLVNGKLIHGLVVKYGLESVVASQTSLLTMYSKCNMVEDSIKVFNS 263

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           +     V W S I G  QN   + AL++++ M R   + +  TL+S+L AC+ LA+LE G
Sbjct: 264 LAYASHVTWTSFIVGLVQNGREEVALSMFREMMRCSISPNHFTLSSILHACSSLAMLEAG 323

Query: 293 TQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
            Q+H   +K   D +  ++ AL+ +Y KCG++E A SVF  + + D++S +TMI   AQN
Sbjct: 324 EQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAYAQN 383

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
           G+  EAL+LFE +K   ++PN +T + +L AC++AG VE+G   F  ++  + I+  R+H
Sbjct: 384 GFGHEALELFERLKKLGLEPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDH 443

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
           Y+CMIDLLGRA + +EA  LI E    PD + WR LL ACK+H   ++A    KK+L+  
Sbjct: 444 YTCMIDLLGRAKRFEEATMLIEEGK-NPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQA 502

Query: 471 PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSH 530
           P+D GT+ILL+NIYA++ KWD V E++   R   + K P  SW+++++++H F   D SH
Sbjct: 503 PRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSH 562

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           P+  +I++ L  LI+K++ +GY PDT +VLQDLE E+K  ++ YHSEKLAI F L   T 
Sbjct: 563 PRAHEISEMLHELIEKVITLGYNPDTKFVLQDLEEEKKISALYYHSEKLAIAFALWK-TC 621

Query: 591 GK--TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GK   IRI KNLR+CGD               I+ RD  R+HHF+ G CSC DYW
Sbjct: 622 GKNTAIRIFKNLRVCGD--------------YIIARDAKRFHHFKGGICSCKDYW 662



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 122/380 (32%), Positives = 216/380 (56%), Gaps = 11/380 (2%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y  LI  C  + ++   K +H H+L  G    +F  + L++ ++K S++ EA+ LFD+MP
Sbjct: 4   YTSLIAQCTNKKSLTTLKSLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDEMP 62

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ--- 193
            R++V+W +MIS++       +A+EL   ML EGV P+ +T+SA+ +A   + + R+   
Sbjct: 63  NRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQK 122

Query: 194 LHCGIIKVGFE-SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            H   + +GFE SD FV + ++D+YAK G++++A  VF+ +  +D+V++ ++I G+ Q+ 
Sbjct: 123 AHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQHG 182

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLIL--NN 310
              EAL +++ M  +    ++ TL SVL +C  L  L  G  +H  V+KY  + ++    
Sbjct: 183 LDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLESVVASQT 242

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           +LL MY KC  +ED++ VF+ +     ++W++ I GL QNG  + AL +F  M    I P
Sbjct: 243 SLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREMMRCSISP 302

Query: 371 NYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           N+ T+  +L ACS    +E G   H  ++K   G+D  +   + +I L G+ G +++A  
Sbjct: 303 NHFTLSSILHACSSLAMLEAGEQIHAVTVK--LGVDGNKFVDAALIHLYGKCGNVEKARS 360

Query: 430 LIHEMPYEPDAVTWRALLGA 449
           +   +  E D V+   ++ A
Sbjct: 361 VFDSLT-ELDIVSINTMIYA 379


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/631 (35%), Positives = 362/631 (57%), Gaps = 58/631 (9%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R+D ++   ++  C +  A+ + K +H++ +  G   + F+ N L++ + K   +++A  
Sbjct: 256 RSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVN 315

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE--------------------- 169
           +F+ M  ++VVSW  M++ Y  +     A EL   M +E                     
Sbjct: 316 VFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGY 375

Query: 170 --------------GVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFES------- 205
                         G  PN  T  ++L AC SL  L Q    H   +K    S       
Sbjct: 376 GQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGG 435

Query: 206 -----DVFVRSALIDIYAKLGELRNAECVFNEMP--TRDLVVWNSIIGGFAQNSDVDEAL 258
                D+ V +ALID+Y+K    + A  +FN +P   R++V W  +IGG+AQ  D ++AL
Sbjct: 436 DGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDAL 495

Query: 259 NLYKRM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHDL-ILNNAL 312
            L+  M  K    A +  T++ +L AC  L+ L +G Q+H +V +   Y+  +  + N L
Sbjct: 496 KLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCL 555

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           +DMY KCG ++ A +VF  M +++ +SW++M+SG   +G  +EAL +F+ M+ +   P+ 
Sbjct: 556 IDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDD 615

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           I+ + +L+ACSH+G V+ G ++F  M+  YG+    +HY+C+IDLL R+G+L +A K I 
Sbjct: 616 ISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQ 675

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
           EMP EP A  W ALL AC+VH N +LA  A  K++++  ++ G+Y L+SNIYA +++W +
Sbjct: 676 EMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKD 735

Query: 493 VAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGY 552
           VA +R+ M+  GI K PGCSW++  K   +F V D SHP   +I   L+ LI ++  +GY
Sbjct: 736 VARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGY 795

Query: 553 APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
            P+TN+ L D++ E+K + +  HSEKLA+ +GL++ + G  IRI KNLR+CGDCH+    
Sbjct: 796 VPETNFALHDVDDEEKNNLLTEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFIY 855

Query: 613 TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +K+ +  I++RD  R+HHF++G+CSCG YW
Sbjct: 856 ISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 128/465 (27%), Positives = 217/465 (46%), Gaps = 67/465 (14%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           L RA+     M   G + D  T    +K C    +       H  +   GFE   F+ N 
Sbjct: 130 LDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNA 189

Query: 115 LLNMHVKFSLLEEAQVLFDQMPER---NVVSWTTMISAYCDAKMNDKALELLIFMLR--- 168
           L+ M+ +   LE+A ++FD++  +   +V+SW ++++A+        AL+L   M     
Sbjct: 190 LVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVH 249

Query: 169 ---EGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
                 R ++ +   +L AC SL  L   +++H   I+ G  +D FV +ALID YAK G 
Sbjct: 250 EKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGS 309

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR--------------AG 268
           +++A  VFN M  +D+V WN+++ G+ Q+     A  L+K M++              AG
Sbjct: 310 MKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAG 369

Query: 269 FA---------------------ADQSTLTSVLRACTGLALLELGTQVHVHVLK------ 301
           +A                      +  T+ S+L AC  L  L  G + H + LK      
Sbjct: 370 YAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSL 429

Query: 302 --------YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI--QKDVISWSTMISGLAQNG 351
                      DL+++NAL+DMY KC S + A ++F+ +   +++V++W+ MI G AQ G
Sbjct: 430 DNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYG 489

Query: 352 YSQEALKLFESM--KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
            S +ALKLF  M  K   + PN  TI  +L AC+H   +  G      + + +  +    
Sbjct: 490 DSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVY 549

Query: 410 HYS-CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             + C+ID+  + G +  A  +   MP + + V+W +++    +H
Sbjct: 550 FVANCLIDMYSKCGDVDTARNVFDSMP-KRNEVSWTSMMSGYGMH 593



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 130/493 (26%), Positives = 222/493 (45%), Gaps = 91/493 (18%)

Query: 56  PRAMK-------AMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF--E 106
           P+A K       ++ + +C G       +A L+K C    +V   + +H  +++ G    
Sbjct: 6   PKAAKRIGVQFLSVASAECTGRDVSPTHFASLLKEC---RSVNTVRQIHQKIIAYGLLSY 62

Query: 107 PETFLVNIL-------------LNMHVKFSLL-----EEAQVLFDQMPERNVVSWTTMIS 148
           P + L   L             L   V  S L      +A  + +++     V W  ++ 
Sbjct: 63  PASLLSVSLPPLPSHSYVSPKSLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVR 122

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFES 205
           A+ +    D+A+ +   MLR G +P+ FT    L+AC  L   R     H  I   GFES
Sbjct: 123 AHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFES 182

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTR---DLVVWNSIIGGFAQNSDVDEALNLYK 262
           +VFV +AL+ +Y++ G L +A  VF+E+  +   D++ WNSI+    + S+   AL+L+ 
Sbjct: 183 NVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFS 242

Query: 263 RM------KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLD 314
            M      K     +D  ++ ++L AC  L  L    ++H + ++     D  + NAL+D
Sbjct: 243 EMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALID 302

Query: 315 MYCKCGSLEDAMSVFSRM-----------------------------------IQKDVIS 339
            Y KCGS++DA++VF+ M                                   I  DVI+
Sbjct: 303 TYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVIT 362

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW-NHFKSM 398
           WS +I+G AQ GY QEAL  F+ M +   +PN +TI+ +L AC+  G +  G   H  S+
Sbjct: 363 WSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSL 422

Query: 399 KK----------FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP-YEPDAVTWRALL 447
           KK            G       ++ +ID+  +    + A  + + +P  E + VTW  ++
Sbjct: 423 KKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMI 482

Query: 448 GACKVHRNTDLAI 460
           G    + +++ A+
Sbjct: 483 GGYAQYGDSNDAL 495


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/498 (41%), Positives = 319/498 (64%), Gaps = 5/498 (1%)

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           +F+ MP+R++VSW T+IS      M++ AL ++  M    +RP+ FT S+VL      + 
Sbjct: 152 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVN 211

Query: 191 L---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L   +++H   I+ G+++DVF+ S+LID+YAK   + ++  VF  +P  D + WNSII G
Sbjct: 212 LLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAG 271

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHD 305
             QN   DE L  +++M  A    +  + +S++ AC  L  L LG Q+H ++++  +D +
Sbjct: 272 CVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGN 331

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           + + +AL+DMY KCG++  A  +F +M   D++SW+ MI G A +G++ +A+ LF+ M+V
Sbjct: 332 VFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEV 391

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
             +KPNY+  + VL ACSHAG V++ W +F SM + Y I PG EHY+ + DLLGR G+L+
Sbjct: 392 EGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLE 451

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           EA + I +M  EP    W  LL AC+VH+N +LA   +KK+  +DPQ+ G Y+LLSNIY+
Sbjct: 452 EAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYS 511

Query: 486 NSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQ 545
            + +W +  ++R  MR +G+ K+P CSWIE+  ++HAF   D SHP  D+IN+ LK L++
Sbjct: 512 AAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLE 571

Query: 546 KLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGD 605
           ++   GY  DT  VL D+E EQK   +  HSE+LAI FG++S   G TIR+ KNLR+C D
Sbjct: 572 QMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVD 631

Query: 606 CHTFAKLTAKMENQTIVI 623
           CHT  K  +K+  + IV 
Sbjct: 632 CHTATKFISKIVGREIVF 649



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 162/296 (54%), Gaps = 9/296 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+  +  M    +R DS T + ++        + + K +H + +  G++ + F+ + L++
Sbjct: 180 ALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLID 239

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K + ++++  +F  +P+ + +SW ++I+      M D+ L+    ML   ++PN  +
Sbjct: 240 MYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVS 299

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +S+++ AC  L  L   +QLH  II+  F+ +VF+ SAL+D+YAK G +R A  +F++M 
Sbjct: 300 FSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKME 359

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             D+V W ++I G+A +    +A++L+KRM+  G   +     +VL AC+   L++   +
Sbjct: 360 LYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWK 419

Query: 295 VHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMIS 345
            + + +  D+ +I       A+ D+  + G LE+A    S M I+     WST+++
Sbjct: 420 -YFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLA 474


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/569 (39%), Positives = 329/569 (57%), Gaps = 39/569 (6%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D  T+  ++K C     V E + VH  V   G E   F+ N L++++ K      AQ LF
Sbjct: 126 DEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLF 185

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192
           D+M  R+VVSW T+IS YC + M DKA                                R
Sbjct: 186 DEMVVRDVVSWNTLISGYCFSGMVDKA--------------------------------R 213

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            +  G++    E ++   S +I  YA++G L  A  +F  MP R++V WN++I G+AQN 
Sbjct: 214 MVFDGMM----EKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNE 269

Query: 253 DVDEALNLYKRMK-RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILN 309
              +A+ L+++M+   G A +  TL SVL AC  L  L+LG  +H  +   K +  L L 
Sbjct: 270 KYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLG 329

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
           NAL DMY KCG + +A  VF  M ++DVISWS +I GLA  GY+ EA   F  M    ++
Sbjct: 330 NALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLE 389

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           PN I+ +G+L AC+HAG V+ G  +F  M + YGI P  EHY C++DLL RAG+L +A  
Sbjct: 390 PNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAES 449

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489
           LI+ MP +P+ + W ALLG C+++++ +       +IL LD    G+ + L+N+YA+  +
Sbjct: 450 LINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGR 509

Query: 490 WDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549
            D+ A  R  MR     K PGCSWIE+N  ++ F + DSSHPQ  +I   ++ L  K+  
Sbjct: 510 LDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKV 569

Query: 550 VGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
            GY P T+ V+ +++ E+KED++  HSEKLA+ FGL++ ++G TIRI KNLR+C DCH  
Sbjct: 570 AGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDA 629

Query: 610 AKLTAKMENQTIVIRDPIRYHHFQDGNCS 638
            K+ +K+  + IV+RD  R+HHF+DG CS
Sbjct: 630 IKIISKIVEREIVVRDRSRFHHFKDGKCS 658



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 21/192 (10%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+  + VT   ++  C    A++  K +H  +     E   FL N L +M+ K   + EA
Sbjct: 286 GLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEA 345

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +F +M ER+V+SW+ +I         ++A      M+ +G+ PN  ++  +L AC   
Sbjct: 346 KGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTAC--- 402

Query: 189 IILRQLHCGIIKVGFE------------SDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
                 H G++  G E              +     ++D+ ++ G L  AE + N MP +
Sbjct: 403 -----THAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQ 457

Query: 237 -DLVVWNSIIGG 247
            +++VW +++GG
Sbjct: 458 PNVIVWGALLGG 469


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/554 (37%), Positives = 340/554 (61%), Gaps = 7/554 (1%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           VH + +    + +  + N L++M++K   +E +  +FD+M  ++ VSWTT+I+ Y  +  
Sbjct: 387 VHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSR 446

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSA 212
             +A+       +EG++ +     ++L AC    S+ +L+Q+H   I+ G   D+ +++ 
Sbjct: 447 YSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL-LDLILKNR 505

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           +IDIY + GE+  A  +F  +  +D+V W S++  FA+N  + EA+ L+ +M  AG   D
Sbjct: 506 IIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPD 565

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFS 330
              L  +L A  GL+ L  G ++H  ++  K+  +  + ++L+DMY  CGS+  A+ VF 
Sbjct: 566 SVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFD 625

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
               KDV+ W+ MI+    +G+ ++A+ +F+ M  + + P++++ + +L+ACSH+  V++
Sbjct: 626 EAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDE 685

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G  +   M   Y + P +EHY+C++DLLGR+G+ +EA K I  MP EP +V W ALLGAC
Sbjct: 686 GKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGAC 745

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
           ++H+N +LA+ A  K+L L+P +PG Y+L+SN++A   KW+ V E+R  M  +G+ K+P 
Sbjct: 746 RIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPA 805

Query: 511 CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG-YAPDTNYVLQDLEGEQKE 569
           CSWIE+   +H F   D SH     I+  L  + +KL   G Y  DT++VL D+  E+K 
Sbjct: 806 CSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFVLHDVSEEEKI 865

Query: 570 DSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRY 629
           D +  HSE+LAI FGL+S   G  +RI KNLR+CGDCH F KL +K+  + IV+RD  R+
Sbjct: 866 DLLHRHSERLAISFGLISTASGTPLRIAKNLRVCGDCHEFTKLVSKLFEREIVVRDANRF 925

Query: 630 HHFQDGNCSCGDYW 643
           HHF  G CSCGD+W
Sbjct: 926 HHFSGGTCSCGDFW 939



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 145/504 (28%), Positives = 232/504 (46%), Gaps = 64/504 (12%)

Query: 48  RFCYQRDLPRAMKAMHAMQCHGVRADSVT--YAELIKCCLARHAVEEAKLVHNHVLSGGF 105
           + C   DL  A++ + A    G RA   T  Y  ++     R AV E + +H H ++ G 
Sbjct: 28  QLCKDGDLREALRQLAARSARG-RAPPPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGA 86

Query: 106 ---EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALEL 162
              +   FL   LL M+ K   L +A  LFD MP R V SW  +I A   +    +A+ +
Sbjct: 87  LGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGV 146

Query: 163 LIFMLRE----GVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALID 215
              M       G  P+  T ++VL+AC +    R   ++H   +K G +    V +AL+ 
Sbjct: 147 YRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVG 206

Query: 216 IYAKLGELRNAECVFNEM-PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           +YAK G L +A  VF  M   RD+  WNS I G  QN    EAL+L++RM+  GF+ +  
Sbjct: 207 MYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSY 266

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKYDHDL-ILNNALLDMYCKCGSLEDAMSVFSRMI 333
           T   VL+ C  LA L  G ++H  +LK   +  I  NALL MY +CG ++ A+ VF  + 
Sbjct: 267 TTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLVMYARCGWVDSALRVFREIG 326

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393
            KD ISW++M+S   QN    EA+  F  M  +   P++  IV +L A  H G + +G  
Sbjct: 327 DKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGRE 386

Query: 394 -HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
            H  ++K+   +D   +  + ++D+  +   ++ + ++   M  + D V+W  ++ AC  
Sbjct: 387 VHAYAVKQR--LDSDLQIANTLMDMYIKCYSVECSARVFDRMRIK-DHVSWTTII-AC-- 440

Query: 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEP--- 509
                                          YA S ++ E     +T +  GI  +P   
Sbjct: 441 -------------------------------YAQSSRYSEAIGKFRTAQKEGIKVDPMMM 469

Query: 510 --------GCSWIEVNKQIHAFNV 525
                   G   I + KQ+H++ +
Sbjct: 470 GSILEACSGLKSISLLKQVHSYAI 493



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 116/436 (26%), Positives = 223/436 (51%), Gaps = 10/436 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     MQ  G   +S T   +++ C     +   + +H  +L  G E      N LL 
Sbjct: 249 ALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTE-FNIQCNALLV 307

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ +   ++ A  +F ++ +++ +SW +M+S Y   ++  +A++    M++ G  P+   
Sbjct: 308 MYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHAC 367

Query: 178 YSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             ++L A      LI  R++H   +K   +SD+ + + L+D+Y K   +  +  VF+ M 
Sbjct: 368 IVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMR 427

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            +D V W +II  +AQ+S   EA+  ++  ++ G   D   + S+L AC+GL  + L  Q
Sbjct: 428 IKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQ 487

Query: 295 VHVHVLKYD-HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           VH + ++    DLIL N ++D+Y +CG +  A+++F  + +KD+++W++M++  A+NG  
Sbjct: 488 VHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLL 547

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYS 412
            EA+ LF  M  + I+P+ + +VG+L A +    +  G   H   ++  + ++      S
Sbjct: 548 HEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAV--VS 605

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
            ++D+    G +  A+K+  E   + D V W A++ A  +H +   AI   K++L     
Sbjct: 606 SLVDMYSGCGSMNYALKVFDEAKCK-DVVLWTAMINATGMHGHGKQAIYIFKRMLETGVS 664

Query: 473 DPGTYILLSNIYANSQ 488
            P     L+ +YA S 
Sbjct: 665 -PDHVSFLALLYACSH 679


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/561 (41%), Positives = 332/561 (59%), Gaps = 24/561 (4%)

Query: 106 EPET-FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC-DAKMNDKALELL 163
           EP T FL   +L +   FS +  A  +FD +   +   W T+I A   D    ++A  L 
Sbjct: 136 EPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLY 195

Query: 164 IFMLREG-VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAK 219
             ML  G   P+  T+  VL+AC  +      +Q+HC I+K GF  DV+V + LI +Y  
Sbjct: 196 RKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGS 255

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
            G L  A  VF+EMP R LV WNS+I    +  + D AL L++ M+R+ F  D  T+ SV
Sbjct: 256 CGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSV 314

Query: 280 LRACTGLALLELGTQVHVHVLK-----YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
           L AC GL  L LGT  H  +L+        D+++ N+L++MYCKCGSL  A  VF  M +
Sbjct: 315 LSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQK 374

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESM--KVSRIKPNYITIVGVLFACSHAGFVEDGW 392
           +D+ SW+ MI G A +G ++EA+  F+ M  K   ++PN +T VG+L AC+H GFV  G 
Sbjct: 375 RDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGR 434

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC-K 451
            +F  M + Y I+P  EHY C++DL+ RAG + EA+ ++  MP +PDAV WR+LL AC K
Sbjct: 435 QYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCK 494

Query: 452 VHRNTDLAICAAKKILNLDPQD-------PGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
              + +L+   A+ I+     +        G Y+LLS +YA++ +W++V  VRK M   G
Sbjct: 495 KGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHG 554

Query: 505 ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYV-LQDL 563
           I KEPGCS IE+N   H F   D+SHPQ  +I + LK +  +L  +GY PD +   L D 
Sbjct: 555 IRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDA 614

Query: 564 EGE-QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIV 622
             +  KE S++ HSE+LAI FGL++L     IRI KNLR+C DCH   KL +K+ N  I+
Sbjct: 615 TNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEII 674

Query: 623 IRDPIRYHHFQDGNCSCGDYW 643
           +RD +R+HHF+DG+CSC DYW
Sbjct: 675 VRDRVRFHHFKDGSCSCLDYW 695



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 168/342 (49%), Gaps = 24/342 (7%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSV----TYAELIKCCLARH 88
           ++I  +SS + +   R C   D+ R  +A    +    R +S     T+  ++K C    
Sbjct: 164 DSIENHSSFMWNTLIRAC-AHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIF 222

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
              E K VH  ++  GF  + ++ N L++++     L+ A+ +FD+MPER++VSW +MI 
Sbjct: 223 GFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMID 282

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIK---VG 202
           A       D AL+L   M R    P+ +T  +VL AC    SL +    H  +++   V 
Sbjct: 283 ALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVD 341

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
              DV V+++LI++Y K G LR AE VF  M  RDL  WN++I GFA +   +EA+N + 
Sbjct: 342 VAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFD 401

Query: 263 RM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNAL------LD 314
           RM  KR     +  T   +L AC     +  G Q    +++   D  +  AL      +D
Sbjct: 402 RMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVR---DYCIEPALEHYGCIVD 458

Query: 315 MYCKCGSLEDAMS-VFSRMIQKDVISWSTMISGLAQNGYSQE 355
           +  + G + +A+  V S  ++ D + W +++    + G S E
Sbjct: 459 LIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVE 500


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/561 (41%), Positives = 332/561 (59%), Gaps = 24/561 (4%)

Query: 106 EPET-FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC-DAKMNDKALELL 163
           EP T FL   +L +   FS +  A  +FD +   +   W T+I A   D    ++A  L 
Sbjct: 56  EPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLY 115

Query: 164 IFMLREG-VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAK 219
             ML  G   P+  T+  VL+AC  +      +Q+HC I+K GF  DV+V + LI +Y  
Sbjct: 116 RKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGS 175

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
            G L  A  VF+EMP R LV WNS+I    +  + D AL L++ M+R+ F  D  T+ SV
Sbjct: 176 CGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSV 234

Query: 280 LRACTGLALLELGTQVHVHVLK-----YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
           L AC GL  L LGT  H  +L+        D+++ N+L++MYCKCGSL  A  VF  M +
Sbjct: 235 LSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQK 294

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESM--KVSRIKPNYITIVGVLFACSHAGFVEDGW 392
           +D+ SW+ MI G A +G ++EA+  F+ M  K   ++PN +T VG+L AC+H GFV  G 
Sbjct: 295 RDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGR 354

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC-K 451
            +F  M + Y I+P  EHY C++DL+ RAG + EA+ ++  MP +PDAV WR+LL AC K
Sbjct: 355 QYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCK 414

Query: 452 VHRNTDLAICAAKKILNLDPQD-------PGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
              + +L+   A+ I+     +        G Y+LLS +YA++ +W++V  VRK M   G
Sbjct: 415 KGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHG 474

Query: 505 ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYV-LQDL 563
           I KEPGCS IE+N   H F   D+SHPQ  +I + LK +  +L  +GY PD +   L D 
Sbjct: 475 IRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDA 534

Query: 564 EGE-QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIV 622
             +  KE S++ HSE+LAI FGL++L     IRI KNLR+C DCH   KL +K+ N  I+
Sbjct: 535 TNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEII 594

Query: 623 IRDPIRYHHFQDGNCSCGDYW 643
           +RD +R+HHF+DG+CSC DYW
Sbjct: 595 VRDRVRFHHFKDGSCSCLDYW 615



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 168/342 (49%), Gaps = 24/342 (7%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSV----TYAELIKCCLARH 88
           ++I  +SS + +   R C   D+ R  +A    +    R +S     T+  ++K C    
Sbjct: 84  DSIENHSSFMWNTLIRAC-AHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIF 142

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
              E K VH  ++  GF  + ++ N L++++     L+ A+ +FD+MPER++VSW +MI 
Sbjct: 143 GFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMID 202

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIK---VG 202
           A       D AL+L   M R    P+ +T  +VL AC    SL +    H  +++   V 
Sbjct: 203 ALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVD 261

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
              DV V+++LI++Y K G LR AE VF  M  RDL  WN++I GFA +   +EA+N + 
Sbjct: 262 VAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFD 321

Query: 263 RM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNAL------LD 314
           RM  KR     +  T   +L AC     +  G Q    +++   D  +  AL      +D
Sbjct: 322 RMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVR---DYCIEPALEHYGCIVD 378

Query: 315 MYCKCGSLEDAMS-VFSRMIQKDVISWSTMISGLAQNGYSQE 355
           +  + G + +A+  V S  ++ D + W +++    + G S E
Sbjct: 379 LIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVE 420



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 150/294 (51%), Gaps = 13/294 (4%)

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESD---VFVRSALIDIYAKLGELRNAECVFNEM 233
            ++ VL+ C  +  L+QLH   ++  +  +   +F+   ++ + +   ++  A  VF+ +
Sbjct: 27  VHATVLQTCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSI 86

Query: 234 PTRDLVVWNSIIGGFAQN-SDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLEL 291
                 +WN++I   A + S  +EA  LY++M +R   + D+ T   VL+AC  +     
Sbjct: 87  ENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSE 146

Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G QVH  ++K  +  D+ +NN L+ +Y  CG L+ A  VF  M ++ ++SW++MI  L +
Sbjct: 147 GKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVR 206

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGR 408
            G    AL+LF  M+ S  +P+  T+  VL AC+  G +  G W H   ++K   +D   
Sbjct: 207 FGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRK-CDVDVAM 264

Query: 409 EHY--SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           +    + +I++  + G L+ A ++   M  + D  +W A++     H   + A+
Sbjct: 265 DVLVKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGRAEEAM 317


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/609 (37%), Positives = 347/609 (56%), Gaps = 16/609 (2%)

Query: 50  CYQRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSG-GFEP 107
           C+Q   P+ +++   AM   G +   VT   ++  C           V    +       
Sbjct: 328 CWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNACSMLQVGSATAFVLEQAMEVVSATR 387

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           +  L   LL  + + + L  A+  FD +   +VVSW  M +AY     + +AL L   ML
Sbjct: 388 DNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERML 447

Query: 168 REGVRPNMFTYSAVLRACDSL------IILRQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
            EGVRP++ T+   L AC +        I +++   + + G E D  V +A +++YAK G
Sbjct: 448 LEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCG 507

Query: 222 ELRNAECVFNEMPT--RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLTS 278
            L +A  VF  +    RD + WNS++  +  +    EA  L++ M+       ++ T  +
Sbjct: 508 SLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVA 567

Query: 279 VLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVF--SRMIQ 334
           VL A T    +  G ++H  V+   ++ D ++ NALL+MY KCGSL+DA ++F  S   Q
Sbjct: 568 VLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQ 627

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
           +DVI+W+++I+G AQ G ++ ALKLF +M+   ++PN++T +  L AC+H G +E G   
Sbjct: 628 EDVIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCEL 687

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR 454
              M   +GI P  +H+SC++DLLGR G+L EA KL+ E   + D +TW ALL ACK  +
Sbjct: 688 LSGMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLL-ERTSQADVITWMALLDACKNSK 746

Query: 455 NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWI 514
             +     A++I+ LDP+   +YI+L+++YA + +W+E A +RKTM  +GI  +PGCS +
Sbjct: 747 ELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAV 806

Query: 515 EVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQY 574
           EVN+++H+F+  D SHP+ ++I   L+ L   +   GY  DT  VL D+  E KE  +  
Sbjct: 807 EVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLMR 866

Query: 575 HSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQD 634
           HSEKLAI FGLMS   G  +R+ KNLR+C DCHT  KL +K+  + I++RD  RYHHF  
Sbjct: 867 HSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFTS 926

Query: 635 GNCSCGDYW 643
           G CSCGDYW
Sbjct: 927 GTCSCGDYW 935



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 141/452 (31%), Positives = 226/452 (50%), Gaps = 33/452 (7%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE--PETFL 111
           DL  A+  + A Q H   +   TY  L++ C    A+++ + +H H+LS   +    +FL
Sbjct: 26  DLTAAVSRIIADQGHCAPS---TYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFL 82

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV 171
            + L+ MH K   L EA+ L D+    +V S T MI A+ +    DKA+EL   M    V
Sbjct: 83  ASDLIVMHAKCGNLAEAEALADRFA--SVYSCTAMIRAWMEHGRPDKAMELFDRM---EV 137

Query: 172 RPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
           RPN     A++ AC  L  L   R++H  I    FE +  + +ALI +Y+K G L +A+ 
Sbjct: 138 RPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQ 197

Query: 229 VFNEMP---TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS-TLTSVLRAC- 283
            F+ +P    RD+V WN++I  F +N    EAL L++ M R G     S T  SVL +C 
Sbjct: 198 AFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCV 257

Query: 284 -TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD---- 336
             GL  LE    +H  ++    + +  +  AL+D Y K GSL+DA  VF R   ++    
Sbjct: 258 EAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTS 317

Query: 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHF 395
           +++ S MIS   QNG+ QE+L+LF +M +   KP+ +T+V VL ACS    ++ G    F
Sbjct: 318 LVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNACS---MLQVGSATAF 374

Query: 396 KSMKKFYGIDPGREHY--SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
              +    +   R++   + ++    R+  L  A +   +    PD V+W A+  A   H
Sbjct: 375 VLEQAMEVVSATRDNVLGTTLLTTYARSNDLPRA-RATFDAIQSPDVVSWNAMAAAYLQH 433

Query: 454 RNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
             +  A+   +++L L+   P     ++ + A
Sbjct: 434 HRSREALVLFERML-LEGVRPSVATFITALTA 464



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 195/397 (49%), Gaps = 22/397 (5%)

Query: 73  DSVTYAELIKCCLARH--AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           +SVT+  ++  C+     ++E+ + +H  ++  G E E F+   L++ + K   L++A  
Sbjct: 245 NSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWE 304

Query: 131 LF----DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD 186
           +F    D+ P  ++V+ + MISA        ++L L   M  EG +P+  T  +VL AC 
Sbjct: 305 VFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNACS 364

Query: 187 SLIILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
            L +       L   +  V    D  + + L+  YA+  +L  A   F+ + + D+V WN
Sbjct: 365 MLQVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWN 424

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL---ALLELGTQVH--V 297
           ++   + Q+    EAL L++RM   G     +T  + L AC          +G ++   +
Sbjct: 425 AMAAAYLQHHRSREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLL 484

Query: 298 HVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM--IQKDVISWSTMISGLAQNGYSQE 355
                + D  + NA L+MY KCGSL DA +VF R+   ++D I+W++M++    +G  +E
Sbjct: 485 EEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKE 544

Query: 356 ALKLFESMKVSR-IKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSC 413
           A +LF++M+  + +KPN +T V VL A +    +  G   H + +   +  D   ++   
Sbjct: 545 AFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQN--A 602

Query: 414 MIDLLGRAGKLQEAVKLIHEMPY-EPDAVTWRALLGA 449
           ++++  + G L +A  +  +    + D + W +L+  
Sbjct: 603 LLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLIAG 639


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/561 (41%), Positives = 332/561 (59%), Gaps = 24/561 (4%)

Query: 106 EPET-FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC-DAKMNDKALELL 163
           EP T FL   +L +   FS +  A  +FD +   +   W T+I A   D    ++A  L 
Sbjct: 79  EPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLY 138

Query: 164 IFMLREG-VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAK 219
             ML  G   P+  T+  VL+AC  +      +Q+HC I+K GF  DV+V + LI +Y  
Sbjct: 139 RKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGS 198

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
            G L  A  VF+EMP R LV WNS+I    +  + D AL L++ M+R+ F  D  T+ SV
Sbjct: 199 CGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSV 257

Query: 280 LRACTGLALLELGTQVHVHVLK-----YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
           L AC GL  L LGT  H  +L+        D+++ N+L++MYCKCGSL  A  VF  M +
Sbjct: 258 LSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQK 317

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESM--KVSRIKPNYITIVGVLFACSHAGFVEDGW 392
           +D+ SW+ MI G A +G ++EA+  F+ M  K   ++PN +T VG+L AC+H GFV  G 
Sbjct: 318 RDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGR 377

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC-K 451
            +F  M + Y I+P  EHY C++DL+ RAG + EA+ ++  MP +PDAV WR+LL AC K
Sbjct: 378 QYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCK 437

Query: 452 VHRNTDLAICAAKKILNLDPQD-------PGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
              + +L+   A+ I+     +        G Y+LLS +YA++ +W++V  VRK M   G
Sbjct: 438 KGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHG 497

Query: 505 ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYV-LQDL 563
           I KEPGCS IE+N   H F   D+SHPQ  +I + LK +  +L  +GY PD +   L D 
Sbjct: 498 IRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDA 557

Query: 564 EGE-QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIV 622
             +  KE S++ HSE+LAI FGL++L     IRI KNLR+C DCH   KL +K+ N  I+
Sbjct: 558 TNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEII 617

Query: 623 IRDPIRYHHFQDGNCSCGDYW 643
           +RD +R+HHF+DG+CSC DYW
Sbjct: 618 VRDRVRFHHFKDGSCSCLDYW 638



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 168/342 (49%), Gaps = 24/342 (7%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSV----TYAELIKCCLARH 88
           ++I  +SS + +   R C   D+ R  +A    +    R +S     T+  ++K C    
Sbjct: 107 DSIENHSSFMWNTLIRAC-AHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIF 165

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
              E K VH  ++  GF  + ++ N L++++     L+ A+ +FD+MPER++VSW +MI 
Sbjct: 166 GFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMID 225

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIK---VG 202
           A       D AL+L   M R    P+ +T  +VL AC    SL +    H  +++   V 
Sbjct: 226 ALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVD 284

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
              DV V+++LI++Y K G LR AE VF  M  RDL  WN++I GFA +   +EA+N + 
Sbjct: 285 VAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFD 344

Query: 263 RM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNAL------LD 314
           RM  KR     +  T   +L AC     +  G Q    +++   D  +  AL      +D
Sbjct: 345 RMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVR---DYCIEPALEHYGCIVD 401

Query: 315 MYCKCGSLEDAMS-VFSRMIQKDVISWSTMISGLAQNGYSQE 355
           +  + G + +A+  V S  ++ D + W +++    + G S E
Sbjct: 402 LIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVE 443


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/558 (40%), Positives = 334/558 (59%), Gaps = 39/558 (6%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR---EGVRPNMFTYSAV 181
           L+ A  L +      + +  +MI AY  +    K+      +L      + P+ +T++ +
Sbjct: 59  LDYANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFL 118

Query: 182 LRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN------------- 225
           +R C  L   +    +H  +IK GFE D  V++ L+ +YA+LG L +             
Sbjct: 119 VRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDL 178

Query: 226 ----------AEC--------VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
                     A+C        +F+EMP RD V WN++I G+AQ     EAL+++  M+  
Sbjct: 179 VTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQME 238

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDA 325
           G   ++ ++  VL ACT L +L+ G  VH +V +Y     + L  AL+DMY KCG+++ A
Sbjct: 239 GVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRA 298

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
           M VF  M +++V +WS+ I GLA NG+ +E+L LF  MK   ++PN IT + VL  CS  
Sbjct: 299 MQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVV 358

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G VE+G  HF SM+  YGI P  EHY  M+D+ GRAG+L+EA+  I+ MP  P    W A
Sbjct: 359 GLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSA 418

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LL AC++++N +L   A +KI+ L+ ++ G Y+LLSNIYA+ + W+ V+ +R+TM+A+G+
Sbjct: 419 LLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGV 478

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            K PGCS IEV+ ++H F V D SHP+ D+I   L+ + + L   GY  +TN VL D+E 
Sbjct: 479 KKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYVANTNPVLFDIEE 538

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           E+KED++  HSEK+AI FGL+SL     IR+  NLRIC DCH  AK+ +K+ N+ I++RD
Sbjct: 539 EEKEDALSKHSEKVAIAFGLISLKGVVPIRVVMNLRICWDCHNVAKMISKIFNREIIVRD 598

Query: 626 PIRYHHFQDGNCSCGDYW 643
             R+HHF+DG CSC DYW
Sbjct: 599 RNRFHHFKDGECSCKDYW 616



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 109/355 (30%), Positives = 172/355 (48%), Gaps = 37/355 (10%)

Query: 15  SSQARQFSLTITPPVA---SCNTITRNSSSLLDD---FT---RFCYQRDLPRAMKAMH-A 64
           +S  R +S + TP  +     N +  N+++L  D   FT   R C Q         +H A
Sbjct: 78  NSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGLCVHGA 137

Query: 65  MQCHGVRADS-------VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           +  HG   D          YAEL   CL+          HN V  G  EP+      +LN
Sbjct: 138 VIKHGFELDPHVQTGLVFMYAEL--GCLSS--------CHN-VFDGAVEPDLVTQTAMLN 186

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
              K   ++ A+ +FD+MPER+ V+W  MI+ Y     + +AL++   M  EGV+ N  +
Sbjct: 187 ACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVS 246

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
              VL AC  L +L   R +H  + +      V + +AL+D+YAK G +  A  VF  M 
Sbjct: 247 MVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMK 306

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            R++  W+S IGG A N   +E+L+L+  MKR G   +  T  SVL+ C+ + L+E G +
Sbjct: 307 ERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRK 366

Query: 295 VHV----HVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMI 344
            H     +V      L     ++DMY + G L++A++  + M ++  V +WS ++
Sbjct: 367 -HFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALL 420



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 137/309 (44%), Gaps = 42/309 (13%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRD 237
           ++L +C +L  ++Q+H  ++  G  ++       +   A      L  A  + N      
Sbjct: 14  SLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANKLLNHNNNPT 73

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAG---FAADQSTLTSVLRACTGLALLELGTQ 294
           L   NS+I  ++++S   ++ + Y  +  +     + D  T T ++R C  L     G  
Sbjct: 74  LFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGLC 133

Query: 295 VHVHVLKYDHDLI--LNNALLDMYC-------------------------------KCGS 321
           VH  V+K+  +L   +   L+ MY                                KCG 
Sbjct: 134 VHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGD 193

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
           ++ A  +F  M ++D ++W+ MI+G AQ G S+EAL +F  M++  +K N +++V VL A
Sbjct: 194 IDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSA 253

Query: 382 CSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
           C+H   ++ G W H  +  + Y +       + ++D+  + G +  A+++   M  E + 
Sbjct: 254 CTHLQVLDHGRWVH--AYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMK-ERNV 310

Query: 441 VTWRALLGA 449
            TW + +G 
Sbjct: 311 YTWSSAIGG 319


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/571 (40%), Positives = 342/571 (59%), Gaps = 52/571 (9%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNMFTYSAVLR 183
           L+ A+ +F  M   N  S+ T+I A  ++     AL + I M+ +  V PN FT+ +V +
Sbjct: 61  LDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFK 120

Query: 184 AC---DSLIILRQLHCGIIKVGFESDVFVRS----------------------------- 211
           AC   + L   RQ+H   +K G +SD FV S                             
Sbjct: 121 ACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCD 180

Query: 212 -----------------ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
                             +ID Y ++GEL  A  +F+EMP R +V WN +I G+AQ+   
Sbjct: 181 GIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHF 240

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNAL 312
            EA+ +++ M+ A    +  TL SVL A + L  LELG  VH++ ++ +   D +L +AL
Sbjct: 241 KEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSAL 300

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           +DMY KCGS+E A+ VF  + +++V++WST+I+GLA +G +++ L  FE M+ + + P+ 
Sbjct: 301 IDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSD 360

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           +T +G+L ACSHAG V +G   F  M +  G++P  EHY CM+DLLGRAG L+E+ +LI 
Sbjct: 361 VTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELIL 420

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
            MP +PD V W+ALLGACK+H N ++    A+ ++ L P D G+Y+ LSNIYA+   W+ 
Sbjct: 421 NMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEG 480

Query: 493 VAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGY 552
           VA+VR  M+   + K+PGCSWIE++  IH F V D SHP+  KI+  L+ + + L+ VGY
Sbjct: 481 VAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGY 540

Query: 553 APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
            P+T  VL +++ E KE S+ YHSEK+AI FGL+S      +RI KNLRIC DCH+  KL
Sbjct: 541 RPNTTQVLTNMDEEDKESSLNYHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKL 600

Query: 613 TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +K+  + I++RD  R+HHF +G+CSC DYW
Sbjct: 601 ISKIYKRKIIVRDRKRFHHFVNGSCSCMDYW 631



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 162/333 (48%), Gaps = 19/333 (5%)

Query: 50  CYQRDLPRAMKAMHAMQCH-GVRADSVTYAELIKCCLARHAVEEA-KLVHNHVLSGG--- 104
           C + +  R  + +H +    G+ +D    + +++  L+   +E+A +L +  V   G   
Sbjct: 122 CGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDG 181

Query: 105 -------FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND 157
                   + +  L N++++ +V+   LE A+ LFD+MP+R+VVSW  MI+ Y  +    
Sbjct: 182 IRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFK 241

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALI 214
           +A+E+   M    V PN  T  +VL A   L  L   + +H   ++     D  + SALI
Sbjct: 242 EAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALI 301

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           D+YAK G +  A  VF  +P R++V W++II G A +    + L+ ++ M+RAG      
Sbjct: 302 DMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDV 361

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
           T   +L AC+   L+  G     H+++    +  +     ++D+  + G LE++  +   
Sbjct: 362 TYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILN 421

Query: 332 M-IQKDVISWSTMISGLAQNGYSQEALKLFESM 363
           M I+ D + W  ++     +G  +   ++ E +
Sbjct: 422 MPIKPDDVIWKALLGACKMHGNVEMGKRVAEHL 454


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/561 (41%), Positives = 332/561 (59%), Gaps = 24/561 (4%)

Query: 106 EPET-FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC-DAKMNDKALELL 163
           EP T FL   +L +   FS +  A  +FD +   +   W T+I A   D    ++A  L 
Sbjct: 70  EPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLY 129

Query: 164 IFMLREG-VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAK 219
             ML  G   P+  T+  VL+AC  +      +Q+HC I+K GF  DV+V + LI +Y  
Sbjct: 130 RKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGS 189

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
            G L  A  VF+EMP R LV WNS+I    +  + D AL L++ M+R+ F  D  T+ SV
Sbjct: 190 CGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSV 248

Query: 280 LRACTGLALLELGTQVHVHVLK-----YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
           L AC GL  L LGT  H  +L+        D+++ N+L++MYCKCGSL  A  VF  M +
Sbjct: 249 LSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQK 308

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESM--KVSRIKPNYITIVGVLFACSHAGFVEDGW 392
           +D+ SW+ MI G A +G ++EA+  F+ M  K   ++PN +T VG+L AC+H GFV  G 
Sbjct: 309 RDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGR 368

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC-K 451
            +F  M + Y I+P  EHY C++DL+ RAG + EA+ ++  MP +PDAV WR+LL AC K
Sbjct: 369 QYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCK 428

Query: 452 VHRNTDLAICAAKKILNLDPQD-------PGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
              + +L+   A+ I+     +        G Y+LLS +YA++ +W++V  VRK M   G
Sbjct: 429 KGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHG 488

Query: 505 ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYV-LQDL 563
           I KEPGCS IE+N   H F   D+SHPQ  +I + LK +  +L  +GY PD +   L D 
Sbjct: 489 IRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDA 548

Query: 564 EGE-QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIV 622
             +  KE S++ HSE+LAI FGL++L     IRI KNLR+C DCH   KL +K+ N  I+
Sbjct: 549 TNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEII 608

Query: 623 IRDPIRYHHFQDGNCSCGDYW 643
           +RD +R+HHF+DG+CSC DYW
Sbjct: 609 VRDRVRFHHFKDGSCSCLDYW 629



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 168/342 (49%), Gaps = 24/342 (7%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSV----TYAELIKCCLARH 88
           ++I  +SS + +   R C   D+ R  +A    +    R +S     T+  ++K C    
Sbjct: 98  DSIENHSSFMWNTLIRAC-AHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIF 156

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
              E K VH  ++  GF  + ++ N L++++     L+ A+ +FD+MPER++VSW +MI 
Sbjct: 157 GFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMID 216

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIK---VG 202
           A       D AL+L   M R    P+ +T  +VL AC    SL +    H  +++   V 
Sbjct: 217 ALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVD 275

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
              DV V+++LI++Y K G LR AE VF  M  RDL  WN++I GFA +   +EA+N + 
Sbjct: 276 VAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFD 335

Query: 263 RM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNAL------LD 314
           RM  KR     +  T   +L AC     +  G Q    +++   D  +  AL      +D
Sbjct: 336 RMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVR---DYCIEPALEHYGCIVD 392

Query: 315 MYCKCGSLEDAMS-VFSRMIQKDVISWSTMISGLAQNGYSQE 355
           +  + G + +A+  V S  ++ D + W +++    + G S E
Sbjct: 393 LIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVE 434


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/552 (39%), Positives = 337/552 (61%), Gaps = 14/552 (2%)

Query: 105 FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
           F  + FL   L+  +   S L  A+ +FD+ P +N+  W  M+ A   A   ++AL  L 
Sbjct: 280 FRSDPFLSTRLIEAYAALSALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLA 339

Query: 165 FMLREGVRPNMFTYSAVLRAC--------DSLIILRQLHCGIIKVGFESDVFVRSALIDI 216
            M R GV  + ++Y+  L+AC         +   +R++H   I+ G+     V + LID 
Sbjct: 340 DMGRLGVPVDSYSYAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDC 399

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM--KRAGFAADQS 274
           YAKLG +  AE VF  MP R+LV W+++IG +A+N    +A+ +++ M    A    +  
Sbjct: 400 YAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSI 459

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRM 332
           T+ SVL AC G+  L  G  +H ++L+   DL+++  NAL+ MY KCG LE    +F+ +
Sbjct: 460 TIVSVLHACAGVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWI 519

Query: 333 -IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
             +++V+SW+++ISG   +G+ +E+L++FE M    I PN IT V VL ACSH G VE G
Sbjct: 520 GRRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQG 579

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
              F+SM + Y + P  EHY+CM+DLLGRAG+L EAV+LI  M  +P    W +LLGAC+
Sbjct: 580 KKLFESMVE-YNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACR 638

Query: 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGC 511
           +H + + A  A   + +L+P++ G Y+LL++IYA ++  ++V  +++ +    + K PGC
Sbjct: 639 IHGHVEYAEMACSHLFDLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHALEKVPGC 698

Query: 512 SWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDS 571
           SWIEV K++++F   D+ +PQ++++   +   + ++   GY PDT  VL D+E E+KE  
Sbjct: 699 SWIEVKKKLYSFVSVDNKNPQVEELQALIGEFVTQMKNEGYVPDTRSVLYDIEEEEKERI 758

Query: 572 IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHH 631
           +  HSEKLA+ FGL+    G+ IRI KNLR+C DCH+  K  +K  ++ IV+RD  R+HH
Sbjct: 759 LLGHSEKLAVAFGLIKTGSGEAIRITKNLRLCEDCHSVTKFISKFTDREIVVRDVNRFHH 818

Query: 632 FQDGNCSCGDYW 643
           F++G CSC DYW
Sbjct: 819 FRNGVCSCRDYW 830



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 180/381 (47%), Gaps = 54/381 (14%)

Query: 69  GVRADSVTYAELIKCCL---ARHAVEEAKL--VHNHVLSGGFEPETFLVNILLNMHVKFS 123
           GV  DS +YA  +K C+   A H    A++  +H H +  G+   T +   L++ + K  
Sbjct: 345 GVPVDSYSYAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLG 404

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE--GVRPNMFTYSAV 181
           ++  A+ +F  MP+RN+VSW+ MI  Y   +    A+++   M+     + PN  T  +V
Sbjct: 405 IVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSV 464

Query: 182 LRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP-TRD 237
           L AC  +  L Q   LH  I++ GF+  V V +AL+ +Y K G L     +FN +   R+
Sbjct: 465 LHACAGVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRN 524

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           +V WNS+I G+  +    E+L +++ M   G + +  T  SVL AC+ + L+E G ++  
Sbjct: 525 VVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFE 584

Query: 298 HVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
            +++Y+                             +      ++ M+  L + G   EA+
Sbjct: 585 SMVEYN-----------------------------VTPRAEHYACMVDLLGRAGRLDEAV 615

Query: 358 KLFESMKVSRIKPNYITIVGVLFAC---SHAGFVEDGWNHFKSMKKFYGIDPGRE-HYSC 413
           +L +SM   RI+P+      +L AC    H  + E   +H       + ++P    +Y  
Sbjct: 616 ELIQSM---RIQPSPQVWGSLLGACRIHGHVEYAEMACSH------LFDLEPRNAGNYVL 666

Query: 414 MIDLLGRAGKLQEAVKLIHEM 434
           + D+  RA KLQ  V ++ E+
Sbjct: 667 LADIYARA-KLQNQVDVLKEL 686


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/573 (37%), Positives = 344/573 (60%), Gaps = 6/573 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           +  ++ CC     V+E K  H ++L  G     ++ N L++M+ +   ++ A  + D +P
Sbjct: 131 FTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVP 190

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---Q 193
             +V S+ +++SA  ++    +A ++L  M+ E V  +  TY +VL  C  +  L+   Q
Sbjct: 191 GDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQ 250

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H  ++K G   DVFV S LID Y K GE+ NA   F+ +  R++V W +++  + QN  
Sbjct: 251 IHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGH 310

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNA 311
            +E LNL+ +M+      ++ T   +L AC  L  L  G  +H  ++   + + LI+ NA
Sbjct: 311 FEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNA 370

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L++MY K G+++ + +VFS M+ +DVI+W+ MI G + +G  ++AL +F+ M  +   PN
Sbjct: 371 LINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPN 430

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
           Y+T +GVL AC H   V++G+ +F  + K + ++PG EHY+CM+ LLGRAG L EA   +
Sbjct: 431 YVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFM 490

Query: 432 HEMP-YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
                 + D V WR LL AC +HRN +L     + ++ +DP D GTY LLSN++A ++KW
Sbjct: 491 KTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKW 550

Query: 491 DEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGV 550
           D V ++RK M+ R I KEPG SW+++    H F    S+HP+  +I + ++ L+  +  +
Sbjct: 551 DGVVKIRKLMKERNIKKEPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPL 610

Query: 551 GYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFA 610
           GYAPD   VL D+E EQKE  + +HSEKLA+ +GLM +     IRI KNLR+C DCH   
Sbjct: 611 GYAPDVGVVLHDVEDEQKEGYLSHHSEKLALAYGLMKIPPPGPIRIIKNLRMCDDCHIAV 670

Query: 611 KLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KL +K  N+ I++RD  R+HHF++G C+C D+W
Sbjct: 671 KLISKATNRLIIVRDANRFHHFREGLCTCNDHW 703



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 175/354 (49%), Gaps = 32/354 (9%)

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR-EG 170
           +N L+N++ K    + A+ LFD+M +RNVVSW+ ++  Y       + L L   ++  + 
Sbjct: 64  INSLINLYSKCGQSKCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDS 123

Query: 171 VRPNMFTYSAVLRAC-DSLIIL--RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
             PN + ++ VL  C DS  +   +Q H  ++K G     +V++ALI +Y++   + +A 
Sbjct: 124 AYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAM 183

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            + + +P  D+  +NSI+    ++    EA  + KRM       D  T  SVL  C  + 
Sbjct: 184 QILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIR 243

Query: 288 LLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
            L+LG Q+H  +LK     D+ +++ L+D Y KCG + +A   F  +  ++V++W+ +++
Sbjct: 244 DLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLT 303

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS-----------HAGFVEDGW-N 393
              QNG+ +E L LF  M++   +PN  T   +L AC+           H   V  G+ N
Sbjct: 304 AYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKN 363

Query: 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           H        G        + +I++  ++G +  +  +   M    D +TW A++
Sbjct: 364 HL-----IVG--------NALINMYSKSGNIDSSYNVFSNM-MNRDVITWNAMI 403



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 155/282 (54%), Gaps = 8/282 (2%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           DSVTY  ++  C     ++    +H  +L  G   + F+ + L++ + K   +  A+  F
Sbjct: 228 DSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQF 287

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192
           D + +RNVV+WT +++AY      ++ L L   M  E  RPN FT++ +L AC SL+ L 
Sbjct: 288 DGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALA 347

Query: 193 Q---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
               LH  I+  GF++ + V +ALI++Y+K G + ++  VF+ M  RD++ WN++I G++
Sbjct: 348 YGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYS 407

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL-KYDHDLIL 308
            +    +AL +++ M  AG   +  T   VL AC  LAL++ G      ++ K+D +  L
Sbjct: 408 HHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGL 467

Query: 309 NN--ALLDMYCKCGSLEDAMSVF--SRMIQKDVISWSTMISG 346
            +   ++ +  + G L++A +    +  ++ DV++W T+++ 
Sbjct: 468 EHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNA 509



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 142/283 (50%), Gaps = 13/283 (4%)

Query: 174 NMFTYSAVLRACDSLIILRQLHCGII---KVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           N+  +SA  +   SL   + +H  ++   +   +SD+   ++LI++Y+K G+ + A  +F
Sbjct: 28  NLLKFSATAK---SLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLF 84

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLRACTGLALL 289
           + M  R++V W++++ G+    +V E L L++ +     A  ++   T VL  C     +
Sbjct: 85  DRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRV 144

Query: 290 ELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
           + G Q H ++LK    L   + NAL+ MY +C  ++ AM +   +   DV S+++++S L
Sbjct: 145 KEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSAL 204

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDP 406
            ++G   EA ++ + M    +  + +T V VL  C+    ++ G   H + +K     D 
Sbjct: 205 VESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDV 264

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
                S +ID  G+ G++  A K    +  + + V W A+L A
Sbjct: 265 FVS--STLIDTYGKCGEVLNARKQFDGLR-DRNVVAWTAVLTA 304



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 146/357 (40%), Gaps = 42/357 (11%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN  +     T +         +     M+    R +  T+A L+  C +  A+    L+
Sbjct: 293 RNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLL 352

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H  ++  GF+    + N L+NM+ K   ++ +  +F  M  R+V++W  MI  Y    + 
Sbjct: 353 HGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLG 412

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDI 216
            +AL +   M+  G  PN  T+  VL AC        +H  +++ GF    +    ++  
Sbjct: 413 KQALLVFQDMMSAGECPNYVTFIGVLSAC--------VHLALVQEGF----YYFDQIMKK 460

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           +     L +  C               ++    +   +DEA N  K   +  +  D    
Sbjct: 461 FDVEPGLEHYTC---------------MVALLGRAGLLDEAENFMKTTTQVKW--DVVAW 503

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYD-HDLILNNALLDMYCKCGSLEDAMSVFSRMIQK 335
            ++L AC       LG Q+   V++ D HD+     L +M+ K    +  + +   M ++
Sbjct: 504 RTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMKER 563

Query: 336 DV-----ISWSTMISG----LAQNGYSQEALKLFESMK--VSRIKP-NYITIVGVLF 380
           ++      SW  + +     +++     E+ ++FE ++  ++ IKP  Y   VGV+ 
Sbjct: 564 NIKKEPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPLGYAPDVGVVL 620


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/581 (38%), Positives = 356/581 (61%), Gaps = 7/581 (1%)

Query: 50  CY-QRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY + D P  A +    M+  G + +      ++K  +   +V   K +H   +    + 
Sbjct: 237 CYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDT 296

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           E  +   LL+M+ K   +++A++ F+ +P  +V+  + MIS Y  +  N++A EL + ++
Sbjct: 297 EPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLM 356

Query: 168 REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           R  V PN ++ S+VL+AC +++ L   +Q+H   IK+G ESD+FV +AL+D YAK  ++ 
Sbjct: 357 RSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMD 416

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
           ++  +F+ +   + V WN+I+ GF+Q+   +EAL+++  M+ A     Q T +SVLRAC 
Sbjct: 417 SSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACA 476

Query: 285 GLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
             A +    Q+H  + K  +++D ++ N+L+D Y KCG + DA+ VF  ++++D+ISW+ 
Sbjct: 477 STASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNA 536

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           +ISG A +G + +AL+LF+ M  S ++ N IT V +L  CS  G V  G + F SM+  +
Sbjct: 537 IISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDH 596

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           GI P  EHY+C++ LLGRAG+L +A++ I ++P  P A+ WRALL +C +H+N  L   +
Sbjct: 597 GIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFS 656

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A+KIL ++PQD  TY+LLSN+YA +   D+VA +RK+MR  G+ K PG SW+E+  +IHA
Sbjct: 657 AEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHA 716

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F+V    HP +  IN  L+ L  K    GY PD N VL D++ EQK   +  HSE+LA+ 
Sbjct: 717 FSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALA 776

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVI 623
           +GL+    G  IRI KNLR C DCHT   + +K+  + I++
Sbjct: 777 YGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIV 817



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 224/437 (51%), Gaps = 14/437 (3%)

Query: 28  PVASCNTI-----TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIK 82
           P+AS   +      RN  S +        + D   A      ++  G   +      ++K
Sbjct: 111 PLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLK 170

Query: 83  CCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVS 142
             +A  A   A  VH+     G +   F+ + L++ +   SL+ +A+ +F+ +  ++ V 
Sbjct: 171 LAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVV 230

Query: 143 WTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGII 199
           WT M+S Y +    + A  +   M   G +PN F  ++VL+A     S+++ + +H   I
Sbjct: 231 WTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAI 290

Query: 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN 259
           K   +++  V  AL+D+YAK G++++A   F  +P  D+++ + +I  +AQ++  ++A  
Sbjct: 291 KTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFE 350

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYC 317
           L+ R+ R+    ++ +L+SVL+ACT +  L+ G Q+H H +K  H  DL + NAL+D Y 
Sbjct: 351 LFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYA 410

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           KC  ++ ++ +FS +   + +SW+T++ G +Q+G  +EAL +F  M+ +++    +T   
Sbjct: 411 KCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSS 470

Query: 378 VLFAC-SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY 436
           VL AC S A     G  H    K  +  D      + +ID   + G +++A+K+   +  
Sbjct: 471 VLRACASTASIRHAGQIHCSIEKSTFNNDTVIG--NSLIDTYAKCGYIRDALKVFQHL-M 527

Query: 437 EPDAVTWRALLGACKVH 453
           E D ++W A++    +H
Sbjct: 528 ERDIISWNAIISGYALH 544



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/319 (33%), Positives = 171/319 (53%), Gaps = 7/319 (2%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVL--SGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           DS   A  ++ C+AR      + VH HV+   G    + F  N+LLNM+ K   L  A+ 
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR---ACDS 187
           LFD+MPERN+VS+ T++ A+      + A  L   +  EG   N F  + +L+   A D+
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDA 177

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
             +   +H    K+G + + FV S LID Y+    + +AE VFN +  +D VVW +++  
Sbjct: 178 AGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSC 237

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHD 305
           +++N   + A  ++ +M+ +G   +   LTSVL+A   L  + LG  +H   +K   D +
Sbjct: 238 YSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTE 297

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
             +  ALLDMY KCG ++DA   F  +   DVI  S MIS  AQ+  +++A +LF  +  
Sbjct: 298 PHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMR 357

Query: 366 SRIKPNYITIVGVLFACSH 384
           S + PN  ++  VL AC++
Sbjct: 358 SSVLPNEYSLSSVLQACTN 376


>gi|297720639|ref|NP_001172681.1| Os01g0884800 [Oryza sativa Japonica Group]
 gi|20161229|dbj|BAB90156.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|255673935|dbj|BAH91411.1| Os01g0884800 [Oryza sativa Japonica Group]
          Length = 517

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/511 (41%), Positives = 309/511 (60%), Gaps = 5/511 (0%)

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCG 197
           + +V+    IS    A ++ +AL L   M   G+R + +T   +L +   L         
Sbjct: 7   KGLVACNAAISRCSRAGLHRRALALFTEMRARGLRADEYTLPPILNSAALLRAPPAAALH 66

Query: 198 IIKVGFE--SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
            + +     S + V +AL+D YAKL  L  A  VF+EMP RD+V W S++ G A+     
Sbjct: 67  ALLLRAGLASHLHVANALVDAYAKLSRLGAARAVFDEMPRRDVVTWTSLVTGLARAGSHG 126

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD--LILNNALL 313
            A+  Y+ M  AG A D+  + +VL +C G   LELG  VH   ++  H+  L + N+L+
Sbjct: 127 LAVRAYRDMVAAGVATDEFAVAAVLSSCAGSTALELGRSVHAAAVRSGHEPFLSVGNSLV 186

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
            MY K GSL DA +VF  M  +  I+W+ +I G AQNG  +E+L ++  M  S  +P+Y+
Sbjct: 187 SMYAKTGSLRDARTVFDAMRSRCAITWTALIVGYAQNGRGRESLAVYADMARSGCRPDYV 246

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
           T VG+LFACSHAG ++ G  HF+SM+  +GI PG +HY+CM+DLLGRAG+L EAV L+  
Sbjct: 247 TFVGLLFACSHAGLLDAGRAHFQSMQSEHGISPGPDHYACMVDLLGRAGRLGEAVDLLDR 306

Query: 434 MPY-EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
            P  E DA  W+ALL AC+ HRN  LA  AA  +  LDP D   Y++LSN+Y+ +++W +
Sbjct: 307 SPAAELDATVWKALLAACRTHRNAALAERAAGMVWRLDPTDAMPYVMLSNLYSRARRWGD 366

Query: 493 VAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGY 552
           VA VR  MR+RGI+KEPGCSW+ V    H F+  D  H +  +I +  + +  ++   G+
Sbjct: 367 VARVRALMRSRGISKEPGCSWVVVAGVTHVFHAGDRDHQRAAEIYRKAEEMAARIRARGH 426

Query: 553 APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
            PDT + LQD   E +E  + +H E+LA+ FGL+++     IR+ KNLR+CGDCH   K+
Sbjct: 427 VPDTEWALQDEAPEGREMGLAHHGERLAVAFGLLAVPAAAPIRVYKNLRVCGDCHAAIKM 486

Query: 613 TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            A++  + I++RD   +HH +DG+CSCGDYW
Sbjct: 487 VAEVYGREIILRDSNCFHHMKDGSCSCGDYW 517



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 139/270 (51%), Gaps = 12/270 (4%)

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           + N L++ + K S L  A+ +FD+MP R+VV+WT++++    A  +  A+     M+  G
Sbjct: 80  VANALVDAYAKLSRLGAARAVFDEMPRRDVVTWTSLVTGLARAGSHGLAVRAYRDMVAAG 139

Query: 171 VRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
           V  + F  +AVL +C    +L + R +H   ++ G E  + V ++L+ +YAK G LR+A 
Sbjct: 140 VATDEFAVAAVLSSCAGSTALELGRSVHAAAVRSGHEPFLSVGNSLVSMYAKTGSLRDAR 199

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            VF+ M +R  + W ++I G+AQN    E+L +Y  M R+G   D  T   +L AC+   
Sbjct: 200 TVFDAMRSRCAITWTALIVGYAQNGRGRESLAVYADMARSGCRPDYVTFVGLLFACSHAG 259

Query: 288 LLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSR--MIQKDVISWS 341
           LL+ G + H   ++ +H +         ++D+  + G L +A+ +  R    + D   W 
Sbjct: 260 LLDAG-RAHFQSMQSEHGISPGPDHYACMVDLLGRAGRLGEAVDLLDRSPAAELDATVWK 318

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPN 371
            +++  A   +   AL    +  V R+ P 
Sbjct: 319 ALLA--ACRTHRNAALAERAAGMVWRLDPT 346



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 103/248 (41%), Gaps = 47/248 (18%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++A   M   GV  D    A ++  C    A+E  + VH   +  G EP   + N L++
Sbjct: 128 AVRAYRDMVAAGVATDEFAVAAVLSSCAGSTALELGRSVHAAAVRSGHEPFLSVGNSLVS 187

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L +A+ +FD M  R  ++WT +I  Y       ++L +   M R G RP+  T
Sbjct: 188 MYAKTGSLRDARTVFDAMRSRCAITWTALIVGYAQNGRGRESLAVYADMARSGCRPDYVT 247

Query: 178 YSAVLRACDSLIILRQLHCGIIKVG---FES-----------DVFVRSALIDIYAKLGEL 223
           +  +L AC         H G++  G   F+S           D +  + ++D+  + G L
Sbjct: 248 FVGLLFACS--------HAGLLDAGRAHFQSMQSEHGISPGPDHY--ACMVDLLGRAGRL 297

Query: 224 RNAECVFNEMPTRDL--VVWNSII---------------GGFAQNSDVDEAL------NL 260
             A  + +  P  +L   VW +++                G     D  +A+      NL
Sbjct: 298 GEAVDLLDRSPAAELDATVWKALLAACRTHRNAALAERAAGMVWRLDPTDAMPYVMLSNL 357

Query: 261 YKRMKRAG 268
           Y R +R G
Sbjct: 358 YSRARRWG 365


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/539 (42%), Positives = 336/539 (62%), Gaps = 19/539 (3%)

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           ++  + K   LE A+  FD MPER+VVSW  M+S Y    + ++AL L   M+  G+ P+
Sbjct: 200 MVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPD 259

Query: 175 MFTYSAVLRACDS-------LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
             T+  V+ AC S         ++R LH   I++    + FVR+AL+D+YAK G+L +A 
Sbjct: 260 ETTWVTVISACSSRGDPCLAASLVRTLHQKRIQL----NCFVRTALLDMYAKFGDLDSAR 315

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG-FAADQSTLTSVLRACTGL 286
            +FN MP R++V WNS+I G+AQN     A+ L+K M  A     D+ T+ SV+ AC  L
Sbjct: 316 KLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHL 375

Query: 287 ALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
             LELG  V   + +    L ++  NA++ MY +CGS+EDA  VF  M  +DV+S++T+I
Sbjct: 376 GALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLI 435

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI 404
           SG A +G+  EA+ L  +MK   I+P+ +T +GVL ACSHAG +E+G   F+S+K     
Sbjct: 436 SGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK----- 490

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAK 464
           DP  +HY+CM+DLLGR G+L++A + +  MP EP A  + +LL A ++H+  +L   AA 
Sbjct: 491 DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAAN 550

Query: 465 KILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFN 524
           K+  L+P + G +ILLSNIYA++ +W +V  +R+ M+  G+ K  G SW+E   ++H F 
Sbjct: 551 KLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFI 610

Query: 525 VADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFG 584
           VAD SH + D I + L  L +K+   GY  D + VL+D+E E+KE+ +  HSEKLAI + 
Sbjct: 611 VADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYA 670

Query: 585 LMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L+    G  IR+ KNLR+C DCHT  K+ +K+E + I++RD  R+H F DG CSC DYW
Sbjct: 671 LLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 729



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 125/438 (28%), Positives = 202/438 (46%), Gaps = 58/438 (13%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAEL 80
           F+ T+ P V    ++ R  S L          +D  + +     MQ  GVR D+  Y  L
Sbjct: 57  FNSTLNPNVFVFTSMLRFYSHL----------QDHAKVVLMYEQMQGCGVRPDAFVYPIL 106

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP--ER 138
           IK      A       H HVL  G   + F+ N +++M+ +   +  A+ +FD++P  ER
Sbjct: 107 IKS-----AGTGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYER 161

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGI 198
            V  W  M+S Y   +   +A  L   M      P                         
Sbjct: 162 KVADWNAMVSGYWKWESEGQAQWLFDVM------P------------------------- 190

Query: 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEAL 258
                E +V   +A++  YAK+ +L  A   F+ MP R +V WN+++ G+AQN   +EAL
Sbjct: 191 -----ERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEAL 245

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACT--GLALLELGTQVHVHVLKYDHDLILNNALLDMY 316
            L+  M  AG   D++T  +V+ AC+  G   L       +H  +   +  +  ALLDMY
Sbjct: 246 RLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMY 305

Query: 317 CKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM-KVSRIKPNYITI 375
            K G L+ A  +F+ M  ++V++W++MI+G AQNG S  A++LF+ M    ++ P+ +T+
Sbjct: 306 AKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTM 365

Query: 376 VGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435
           V V+ AC H G +E G N          I      ++ MI +  R G +++A ++  EM 
Sbjct: 366 VSVISACGHLGALELG-NWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMA 424

Query: 436 YEPDAVTWRALLGACKVH 453
              D V++  L+     H
Sbjct: 425 TR-DVVSYNTLISGFAAH 441



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 182/400 (45%), Gaps = 54/400 (13%)

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE-AQVLFDQMPERNVVSWTTMISAYCD 152
           + +H  ++        + V +L+N   +         +LF+     NV  +T+M+  Y  
Sbjct: 18  RQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFYSH 77

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSA 212
            + + K + +   M   GVRP+ F Y  ++++  +  I    H  ++K+G  SD FVR+A
Sbjct: 78  LQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTGGI--GFHAHVLKLGHGSDAFVRNA 135

Query: 213 LIDIYAKLGELRNAECVFNEMP--TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
           +ID+YA+LG + +A  VF+E+P   R +  WN+++ G+ +     +A  L+  M      
Sbjct: 136 VIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMP----- 190

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFS 330
                                           + ++I   A++  Y K   LE A   F 
Sbjct: 191 --------------------------------ERNVITWTAMVTGYAKVKDLEAARRYFD 218

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            M ++ V+SW+ M+SG AQNG ++EAL+LF+ M  + I+P+  T V V+ ACS  G    
Sbjct: 219 CMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRG---- 274

Query: 391 GWNHFKSMKKFYGIDPGREHYSC-----MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
             +   +      +   R   +C     ++D+  + G L  A KL + MP   + VTW +
Sbjct: 275 --DPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGR-NVVTWNS 331

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           ++     +  + +AI   K+++      P    ++S I A
Sbjct: 332 MIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISA 371



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 145/284 (51%), Gaps = 16/284 (5%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARH----AVEEAKLVHNHVLSGGFEPETFLVN 113
           A++    M   G+  D  T+  +I  C +R     A    + +H   +    +   F+  
Sbjct: 244 ALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRI----QLNCFVRT 299

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR-EGVR 172
            LL+M+ KF  L+ A+ LF+ MP RNVV+W +MI+ Y     +  A+EL   M+  + + 
Sbjct: 300 ALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLT 359

Query: 173 PNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFV----RSALIDIYAKLGELRNAEC 228
           P+  T  +V+ AC  L  L +L   +++   E+ + +     +A+I +Y++ G + +A+ 
Sbjct: 360 PDEVTMVSVISACGHLGAL-ELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKR 418

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           VF EM TRD+V +N++I GFA +    EA+NL   MK  G   D+ T   VL AC+   L
Sbjct: 419 VFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGL 478

Query: 289 LELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           LE G +V   +   D  +     ++D+  + G LEDA     RM
Sbjct: 479 LEEGRKVFESI--KDPAIDHYACMVDLLGRVGELEDAKRTMERM 520


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/612 (37%), Positives = 353/612 (57%), Gaps = 41/612 (6%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           +  T+  LIK    R      K VH   +   F  + F++N L++ +     L+ A ++F
Sbjct: 239 NKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVF 298

Query: 133 DQMPERN--VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---S 187
           + +   N  +VSW +M++ +      DKAL+L   M  EGV PN  T  +V+ AC    +
Sbjct: 299 EMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMN 358

Query: 188 LIILRQL------------------------HCGIIKVG---FES----DVFVRSALIDI 216
           L + R++                         CG +++    F++    DV   + +ID 
Sbjct: 359 LTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDG 418

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK--RAGFAADQS 274
           YAK+ E   A  +F+ MP +D+  WN +I G+ Q+    EAL +++ ++  ++G   DQ 
Sbjct: 419 YAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQV 478

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRM 332
           TL S L AC  L  +++G  +H ++ K    L  N   +L+DMY K G +E A+ VF  +
Sbjct: 479 TLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSI 538

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
             KDV  WS MI+GLA +G  + A++LF  M+ +++KPN +T   +L ACSH+G V++G 
Sbjct: 539 GNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGK 598

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
             F  M++ YG+ P  +HYSCM+D+LGRAG L+EA+K I  MP  P A  W ALLGAC +
Sbjct: 599 RLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCI 658

Query: 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCS 512
           H N +LA  A  ++L ++P + G Y+LLSN+YA +  W+ V+E+R+ MR  G+ KE GCS
Sbjct: 659 HGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCS 718

Query: 513 WIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQ-KEDS 571
            IE++  +H F V D++HP    I   L  ++ +L   GY  +T  +LQ +E E+ KE +
Sbjct: 719 SIEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKA 778

Query: 572 IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHH 631
           ++ HSEK+AI FGL+     + IRI KNLR+C DCHT AK+ +K+  + IV+RD  R+HH
Sbjct: 779 LKLHSEKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHH 838

Query: 632 FQDGNCSCGDYW 643
           F  G+CSC DYW
Sbjct: 839 FSGGHCSCQDYW 850



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 196/381 (51%), Gaps = 45/381 (11%)

Query: 122 FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSA 180
           FS L+ A+ +FDQ+P+ N+ SW  +I A   +    +++ + I ML +    PN FT+  
Sbjct: 186 FSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPV 245

Query: 181 VLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN--EMPT 235
           +++A       ++ + +H   IK  F  DVFV ++LI  YA  G L  A  VF   E   
Sbjct: 246 LIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNN 305

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
           +D+V WNS++ GF Q    D+AL+L++RM+  G   +  T+ SV+ AC     L LG +V
Sbjct: 306 KDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKV 365

Query: 296 HVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWST----------- 342
             ++ + +  + LN  NA +DM+ KCG +E A  +F  M ++DV+SW+T           
Sbjct: 366 CDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEH 425

Query: 343 --------------------MISGLAQNGYSQEALKLFESMKVSR--IKPNYITIVGVLF 380
                               +ISG  Q+G  +EAL +F  +++++   +P+ +T++  L 
Sbjct: 426 GIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLS 485

Query: 381 ACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD 439
           AC+  G ++ G W H    K+   I   R   + +ID+  ++G +++A+++ H +    D
Sbjct: 486 ACAQLGAMDIGEWIHGYIKKE--RIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIG-NKD 542

Query: 440 AVTWRALLGACKVHRNTDLAI 460
              W A++    +H   + AI
Sbjct: 543 VFVWSAMIAGLAMHGRGEAAI 563



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 113/212 (53%), Gaps = 9/212 (4%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDI--YAKLGELRNAECVFNEMPTRD 237
           A+ + C S   L+Q+H  +++     D +  S L     ++    L  A  VF+++P  +
Sbjct: 144 ALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPN 203

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           L  WN +I   A +SD  +++ ++ RM   + F  ++ T   +++A        +G  VH
Sbjct: 204 LYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVH 263

Query: 297 VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNG 351
              +K  +  D+ + N+L+  Y  CG L+ A  VF  MI+   KD++SW++M++G  Q G
Sbjct: 264 GMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVF-EMIEGNNKDIVSWNSMVTGFVQGG 322

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
           Y  +AL LFE M+   + PN +T+V V+ AC+
Sbjct: 323 YPDKALDLFERMRNEGVHPNAVTMVSVMSACA 354



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 81/192 (42%), Gaps = 21/192 (10%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G R D VT    +  C    A++  + +H ++     +    L   L++M+ K   +E+A
Sbjct: 472 GARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKA 531

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
             +F  +  ++V  W+ MI+        + A+EL + M    V+PN  T++ +L AC   
Sbjct: 532 IEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACS-- 589

Query: 189 IILRQLHCGIIKVG---FESDVFV---------RSALIDIYAKLGELRNAECVFNEMP-T 235
                 H G++  G   F+    V          S ++D+  + G L  A      MP  
Sbjct: 590 ------HSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLA 643

Query: 236 RDLVVWNSIIGG 247
               VW +++G 
Sbjct: 644 PSASVWGALLGA 655


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/578 (39%), Positives = 337/578 (58%), Gaps = 37/578 (6%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           VR D  T+  ++K C     +   + +H      G     F+ N L++M+ K   L EA+
Sbjct: 136 VRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEAR 195

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
           ++ D+M  R+VVSW +++  Y   +  D ALE+   M    +  +  T +++L A  +  
Sbjct: 196 LVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTT 255

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
                         E+ ++V+    D++ K+G+             + LV WN +IG + 
Sbjct: 256 T-------------ENVMYVK----DMFFKMGK-------------KSLVSWNVMIGVYM 285

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLI 307
           +N+   EA+ LY RM+  GF  D  ++TSVL AC   + L LG ++H ++   K   +L+
Sbjct: 286 KNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLL 345

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           L NAL+DMY KCG LE A  VF  M  +DV+SW+ MIS    +G   +A+ LF  ++ S 
Sbjct: 346 LENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSG 405

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           + P+ I  V  L ACSHAG +E+G + FK M   Y I P  EH +CM+DLLGRAGK++EA
Sbjct: 406 LVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEA 465

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487
            + I +M  EP+   W ALLGAC+VH +TD+ + AA K+  L P+  G Y+LLSNIYA +
Sbjct: 466 YRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKA 525

Query: 488 QKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL 547
            +W+EV  +R  M+++G+ K PG S +EVN+ IH F V D SHPQ D+I + L  L++K+
Sbjct: 526 GRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKM 585

Query: 548 VGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ-----GKTIRIRKNLRI 602
             +GY PD+   L D+E E KE  +  HSEKLAIVF LM+  +       TIRI KNLRI
Sbjct: 586 KELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRI 645

Query: 603 CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
           CGDCH  AKL +++ ++ I+IRD  R+H F+ G CSC 
Sbjct: 646 CGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCA 683



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 172/365 (47%), Gaps = 48/365 (13%)

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
           + VH+ ++       + L   L+  +     +  A+ +FD++PERNV+    MI +Y + 
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVR 210
               + +++   M    VRP+ +T+  VL+AC    +++I R++H    KVG  S +FV 
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
           + L+ +Y K G L  A  V +EM  RD+V WNS++ G+AQN   D+AL + + M+    +
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFS 330
            D  T+ S+L A +      +                       MY K         +F 
Sbjct: 239 HDAGTMASLLPAVSNTTTENV-----------------------MYVK--------DMFF 267

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
           +M +K ++SW+ MI    +N    EA++L+  M+    +P+ ++I  VL AC     +  
Sbjct: 268 KMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSL 327

Query: 391 GWNHFKSMKKFYG------IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           G       KK +G      + P     + +ID+  + G L++A  +   M    D V+W 
Sbjct: 328 G-------KKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSR-DVVSWT 379

Query: 445 ALLGA 449
           A++ A
Sbjct: 380 AMISA 384



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 152/309 (49%), Gaps = 33/309 (10%)

Query: 154 KMNDKALELLIFMLRE--GVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRS 211
           +++ K+ +  +F+L +     P++ T    LR   S IIL  L C        S + V+ 
Sbjct: 32  ELDQKSPQETVFLLGQVLDTYPDIRT----LRTVHSRIILEDLRCN-------SSLGVK- 79

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
            L+  YA L ++ +A  VF+E+P R++++ N +I  +  N    E + ++  M       
Sbjct: 80  -LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRP 138

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVF 329
           D  T   VL+AC+    + +G ++H    K      L + N L+ MY KCG L +A  V 
Sbjct: 139 DHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVL 198

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG--- 386
             M ++DV+SW++++ G AQN    +AL++   M+  +I  +  T+  +L A S+     
Sbjct: 199 DEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTEN 258

Query: 387 --FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP---YEPDAV 441
             +V+D +  FK  KK          ++ MI +  +     EAV+L   M    +EPDAV
Sbjct: 259 VMYVKDMF--FKMGKK------SLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAV 310

Query: 442 TWRALLGAC 450
           +  ++L AC
Sbjct: 311 SITSVLPAC 319



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 94/206 (45%), Gaps = 5/206 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+  G   D+V+   ++  C    A+   K +H ++      P   L N L++
Sbjct: 293 AVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALID 352

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   LE+A+ +F+ M  R+VVSWT MISAY  +     A+ L   +   G+ P+   
Sbjct: 353 MYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIA 412

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVR----SALIDIYAKLGELRNAECVFNEM 233
           +   L AC    +L +       +     +  R    + ++D+  + G+++ A     +M
Sbjct: 413 FVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDM 472

Query: 234 PTR-DLVVWNSIIGGFAQNSDVDEAL 258
               +  VW +++G    +SD D  L
Sbjct: 473 SMEPNERVWGALLGACRVHSDTDIGL 498


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/587 (37%), Positives = 351/587 (59%), Gaps = 21/587 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL---L 125
           G   D  + + +I  C    +V   + +H+  L  G   ++ +   L++M+ K  +   +
Sbjct: 241 GFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSM 300

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK-ALELLIFMLREGVRPNMFTYSAVLRA 184
           E A+ +F  MP  NV+SWT +IS Y  + + +   + L   ML E +RPN  TYS +L+A
Sbjct: 301 EHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKA 360

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C +L      RQ+H  ++K        V +AL+ +YA+ G +  A   F+++   +++  
Sbjct: 361 CANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNIL-- 418

Query: 242 NSIIGGFAQNSDVD-EALNLYKRMKRAGFAADQSTLT--SVLRACTGLALLELGTQVHVH 298
                  + + DV+ E  N     K  G     ST T  S+L A   + LL  G ++H  
Sbjct: 419 -------SMSPDVETERNNASCSSKIEGMDDGVSTFTFASLLSAAASVGLLTKGQKLHAL 471

Query: 299 VLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
            +K  +  D  ++N+L+ MY +CG LEDA   F  M   +VISW+++ISGLA++GY+++A
Sbjct: 472 SMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQA 531

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           L +F  M ++ +KPN +T + VL ACSH G V++G  HF+SM+K +G+ P  EHY+C++D
Sbjct: 532 LSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVD 591

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476
           LL R+G ++EA + I+EMP + DA+ W+ LL AC+ + NT++   AA  ++NL+P+DP  
Sbjct: 592 LLARSGLVEEARQFINEMPCKADALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAP 651

Query: 477 YILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKI 536
           Y+LLSN+YA++  WDEVA +R  MR + ++KE G SW++V   IH F   D+SHP    I
Sbjct: 652 YVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDI 711

Query: 537 NKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRI 596
              L  LI+++  +GY PDT+ VL D+  E KE  +  HSEK+A+ FGL++ +  K +RI
Sbjct: 712 YAKLVTLIREIKDIGYVPDTSIVLHDMSEELKEQYLLQHSEKIAVAFGLITTSATKPMRI 771

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KNLR+C DCH+  K  +K   + I++RD  R+H  +DG CSCG+YW
Sbjct: 772 FKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGICSCGEYW 818



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/293 (35%), Positives = 157/293 (53%), Gaps = 14/293 (4%)

Query: 105 FEPETFLVNILLNMHVKFSLLEEAQVLFDQM-PERNVVSWTTMISAYCDAKMNDKALELL 163
            + +  + N LL M+ K   +E A+ +FDQM   R++VSWT M S         ++L LL
Sbjct: 72  LDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCLARNGAERESLRLL 131

Query: 164 IFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGII-----KVGF-ESDVFVRSALIDIY 217
             ML  G+RPN FT  A  RAC    + R L  G++     K GF  +DV V  ALID++
Sbjct: 132 GEMLELGLRPNAFTLCAAARACFPQELFR-LAGGVVLGFVLKTGFWGTDVSVGCALIDMF 190

Query: 218 AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT 277
           A+ G+L  A+ VF+ +  R  VVW  +I  + Q     + + L+  M   GF  D  +++
Sbjct: 191 ARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMS 250

Query: 278 SVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCG---SLEDAMSVFSRM 332
           S++ ACT L  + LG Q+H   L+     D  ++  L+DMY K     S+E A  VF  M
Sbjct: 251 SMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTM 310

Query: 333 IQKDVISWSTMISGLAQNGYSQ-EALKLFESMKVSRIKPNYITIVGVLFACSH 384
            + +V+SW+ +ISG  Q+G  +   + LF  M    I+PN+IT   +L AC++
Sbjct: 311 PRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACAN 363



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 158/304 (51%), Gaps = 15/304 (4%)

Query: 59  MKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118
           M     M    +R + +TY+ L+K C      +  + +H HVL         + N L++M
Sbjct: 336 MALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSM 395

Query: 119 HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTY 178
           + +   +EEA+  FDQ+ E N++S    +S   + + N+ +    I  + +GV  + FT+
Sbjct: 396 YAESGCMEEARKAFDQLYETNILS----MSPDVETERNNASCSSKIEGMDDGV--STFTF 449

Query: 179 SAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235
           +++L A  S+ +L   ++LH   +K GF SD  + ++L+ +YA+ G L +A   F+EM  
Sbjct: 450 ASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKD 509

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
            +++ W SII G A++    +AL+++  M  AG   +  T  +VL AC+ + L++ G + 
Sbjct: 510 HNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKE- 568

Query: 296 HVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQN 350
           H   ++ DH L+        ++D+  + G +E+A    + M  + D + W T++S     
Sbjct: 569 HFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRTY 628

Query: 351 GYSQ 354
           G ++
Sbjct: 629 GNTE 632


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/595 (36%), Positives = 345/595 (57%), Gaps = 25/595 (4%)

Query: 64  AMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123
           +++ HG+     T+  ++K C      +    +H+ V+  GF  +   +  LL+++    
Sbjct: 101 SIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSG 160

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
            L +A  +F+++PER+VV+WT + S Y  A  + +A++L   M+  GVRP+ +    VL 
Sbjct: 161 RLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLS 220

Query: 184 ACDSLIILRQLHCGIIKVG-----------FESDVFVRSALIDIYAKLGELRNAECVFNE 232
           AC        +H G +  G            + + FVR+ L+++YAK G++  A  VF+ 
Sbjct: 221 AC--------VHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDS 272

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           M  +D+V W+++I G+A NS   E +  + +M +     DQ ++   L +C  L  L+LG
Sbjct: 273 MGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLG 332

Query: 293 ----TQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
               + +  H  ++  +L + NAL+DMY KCG++     VF  M +KD++  +  ISGLA
Sbjct: 333 EWGISLIDRH--EFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLA 390

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           +NG+ + +  +F   +   I P+  T +G+L  C HAG ++DG   F ++   Y +    
Sbjct: 391 KNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTV 450

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           EHY CM+DL GRAG L +A +LI +MP  P+A+ W ALL  C++ ++T LA    K+++ 
Sbjct: 451 EHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIA 510

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           L+P + G Y+ LSNIY+ S +WDE AEVR  M  +G+ K PG SWIE+   +H F   D 
Sbjct: 511 LEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLADDK 570

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
           SHP  DKI   L+ L  ++  +G+ P T +V  D+E E+KE  + +HSEKLA+ FGL+S 
Sbjct: 571 SHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEKERVLGHHSEKLAVAFGLIST 630

Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             G+ IR+ KNLR+CGDCH   KL +K+  + IV+RD  R+H F +G+CSC DYW
Sbjct: 631 DHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 196/393 (49%), Gaps = 15/393 (3%)

Query: 95  LVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK 154
           L+H+H+       +TFLVN+LL   + F     + +LF      N+  + T+I+ + +  
Sbjct: 36  LIHHHL-----HHDTFLVNLLLKRTLFFRQTHYSFLLFSHTQFPNIFLYNTLINGFVNNH 90

Query: 155 MNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRS 211
           +  + L+L + + + G+  + FT+  VL+AC      +    LH  ++K GF  DV   +
Sbjct: 91  LFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMT 150

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
           +L+ IY+  G L +A  VF E+P R +V W ++  G+       EA++L+K+M   G   
Sbjct: 151 SLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRP 210

Query: 272 DQSTLTSVLRACTGLALLELGTQV--HVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVF 329
           D   +  VL AC  +  L+ G  +  H+  ++   +  +   L+++Y KCG +E A SVF
Sbjct: 211 DSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVF 270

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
             M +KD+++WSTMI G A N + +E ++ F  M    +KP+  +IVG L +C+  G ++
Sbjct: 271 DSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALD 330

Query: 390 DG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
            G W    S+   +         + +ID+  + G +    ++  EM  +   +   A+ G
Sbjct: 331 LGEWG--ISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISG 388

Query: 449 ACK-VHRNTDLAICAAKKILNLDPQDPGTYILL 480
             K  H     A+    + L + P D  T++ L
Sbjct: 389 LAKNGHVKLSFAVFGQTEKLGISP-DGSTFLGL 420


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/682 (33%), Positives = 372/682 (54%), Gaps = 84/682 (12%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           SSL+   T+    +   +++     M  HG+  D+     L K C    A +  K +H  
Sbjct: 85  SSLIYALTK---AKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCV 141

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
               G + + F+   L +M+++   + +A+ +FD+M E++VV+ + ++  Y      ++ 
Sbjct: 142 ACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEV 201

Query: 160 LELLIFMLREGVRPNMFTYSAVLRA----------------------------------- 184
           + +L  M + G+ PN+ +++ +L                                     
Sbjct: 202 VRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPS 261

Query: 185 ---CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD---- 237
               ++L + RQ+H  +IK G   D  V SA++D+Y K G +     +F+E    +    
Sbjct: 262 VGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVC 321

Query: 238 -------------------------------LVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
                                          +V W SII G AQN    EAL L++ M+ 
Sbjct: 322 NAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQV 381

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVH-----VHVLKYDHDLILNNALLDMYCKCGS 321
           AG   ++ T+ S+L AC  +A L  G   H     VH+L    D+ + +AL+DMY KCG 
Sbjct: 382 AGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLD---DVHVGSALIDMYAKCGR 438

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
           ++ +  VF+ M  K+++ W+++++G + +G ++E + +FES+  +R+KP++I+   +L A
Sbjct: 439 IKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSA 498

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
           C   G  ++GW +F  M + YGI P  EHYSCM++LLGRAGKLQEA  LI E+P+EPD+ 
Sbjct: 499 CGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSC 558

Query: 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
            W ALL +C++  N DLA  AA+K+ +L+P++PGTY+L+SNIYA    W EV  +R  M 
Sbjct: 559 VWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKME 618

Query: 502 ARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQ 561
           + G+ K PGCSWI+V  +++     D SHPQID+I + +  + +++   G+ P+ ++ LQ
Sbjct: 619 SLGLKKNPGCSWIQVKNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGHRPNLDFALQ 678

Query: 562 DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTI 621
           D+E +++E  +  HSEKLA+VFGL++   G  +++ KNLRICGDCH   K  +    + I
Sbjct: 679 DVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREI 738

Query: 622 VIRDPIRYHHFQDGNCSCGDYW 643
            IRD  R+HHF+DG CSCGD+W
Sbjct: 739 FIRDTNRFHHFKDGICSCGDFW 760



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/432 (23%), Positives = 194/432 (44%), Gaps = 77/432 (17%)

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H  +L  G + + ++   L+  +  ++   +A ++   +P+  V S++++I A   AK+ 
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLF 97

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSAL 213
            +++ +   M   G+ P+      + + C  L      +Q+HC     G + D FV+ +L
Sbjct: 98  SQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSL 157

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVV--------------------------------- 240
             +Y + G + +A  VF+ M  +D+V                                  
Sbjct: 158 FHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNI 217

Query: 241 --WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
             WN I+ GF ++    EA+ ++++M   GF  DQ T++SVL +      L +G Q+H +
Sbjct: 218 VSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGY 277

Query: 299 VLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRM------------------------ 332
           V+K     D  + +A+LDMY K G +   + +F                           
Sbjct: 278 VIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKA 337

Query: 333 -----------IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
                      ++ +V+SW+++I+G AQNG   EAL+LF  M+V+ +KPN +TI  +L A
Sbjct: 338 LEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPA 397

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
           C +   +  G +      + + +D      S +ID+  + G+++ +  + + MP + + V
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLDDVHVG-SALIDMYAKCGRIKMSQIVFNMMPTK-NLV 455

Query: 442 TWRALLGACKVH 453
            W +L+    +H
Sbjct: 456 CWNSLMNGYSMH 467



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 117/235 (49%), Gaps = 3/235 (1%)

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           Q H  I+K G ++D ++ + LI  Y+      +A+ +   +P   +  ++S+I    +  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAK 95

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNN 310
              +++ ++ RM   G   D   L ++ + C  L+  + G Q+H    V   D D  +  
Sbjct: 96  LFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQG 155

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           +L  MY +CG + DA  VF RM +KDV++ S ++ G A+ G  +E +++   M+ S I+P
Sbjct: 156 SLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEP 215

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
           N ++  G+L   + +G+ ++    F+ M    G  P +   S ++  +G +  L 
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVIMFQKMHHL-GFCPDQVTVSSVLPSVGDSENLN 269


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/682 (34%), Positives = 367/682 (53%), Gaps = 72/682 (10%)

Query: 34  TITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEA 93
           T  +NS +     + +C        ++    M   G +    T   +++ C     +   
Sbjct: 94  TPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTG 153

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER-NVVSWTTMISAYCD 152
           K++H + +    E   F+   L++M+ K   L EA+ LF  +P+R N V WT M++ Y  
Sbjct: 154 KMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQ 213

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFV 209
              + KA++    M  +G+  N FT+ ++L AC S+      RQ+H  II  GF  +V+V
Sbjct: 214 NGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYV 273

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
           +SAL+D+YAK G+L +A  + + M   D+V WNS+I G   +  ++EAL L+ +M     
Sbjct: 274 QSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDI 333

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMS 327
             D  T  SVL++      L++G  VH   +K  +D    ++NAL+DMY K G+L  A+ 
Sbjct: 334 RIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSCALD 393

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS---- 383
           VF++++ KDVISW+++++G   NG+ ++AL+LF  M+ +R+  +   +  V  AC+    
Sbjct: 394 VFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELTV 453

Query: 384 -------HAGFV------------------------EDGWNHFKSMK------------- 399
                  HA F+                        ED    F SM+             
Sbjct: 454 IEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVFDSMETRNVISWTAIIVG 513

Query: 400 ------------------KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
                             K YGI P  +HY+CMIDLLGRAGK+ EA  L++ M  EPDA 
Sbjct: 514 YAQNGLVETGQSYFESMEKVYGIKPASDHYACMIDLLGRAGKINEAEHLLNRMDVEPDAT 573

Query: 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
            W++LL AC+VH N +L   A K ++ L+P +   Y+LLSN+++ + +W++ A +R+ M+
Sbjct: 574 IWKSLLSACRVHGNLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMK 633

Query: 502 ARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQ 561
             GI KEPG SWIE+  Q+H F   D SHP   +I   +  ++  +   G+ PD N+ L+
Sbjct: 634 TMGINKEPGYSWIEMKSQVHTFISEDRSHPLAAEIYSKIDEMMILIKEAGHVPDMNFALR 693

Query: 562 DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTI 621
           D++ E KE S+ YHSEKLA+ FGL+++ +G  IRI KNLR+CGDCH+  K  + +  + I
Sbjct: 694 DMDEEAKERSLAYHSEKLAVAFGLLTVAKGAPIRIFKNLRVCGDCHSAMKYISSIFKRHI 753

Query: 622 VIRDPIRYHHFQDGNCSCGDYW 643
           ++RD   +HHF +G CSCGD+W
Sbjct: 754 ILRDLNCFHHFIEGKCSCGDFW 775



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 190/346 (54%), Gaps = 8/346 (2%)

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           + +  NI+++ +     L EA+ LF++ P +N ++W++++S YC      + L     M 
Sbjct: 67  DKYTWNIMISAYANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMW 126

Query: 168 REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
            +G +P+ +T  +VLRAC +L +L   + +HC  IK+  E+++FV + L+D+Y+K   L 
Sbjct: 127 SDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLL 186

Query: 225 NAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
            AE +F  +P R + V W +++ G+AQN +  +A+  +K M+  G  ++  T  S+L AC
Sbjct: 187 EAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTAC 246

Query: 284 TGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
           T ++    G QVH  ++   +  ++ + +AL+DMY KCG L  A  +   M   DV+ W+
Sbjct: 247 TSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWN 306

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
           +MI G   +GY +EAL LF  M    I+ +  T   VL + +    ++ G     S+   
Sbjct: 307 SMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIG-ESVHSLTIK 365

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
            G D  +   + ++D+  + G L  A+ + +++  + D ++W +L+
Sbjct: 366 TGFDACKTVSNALVDMYAKQGNLSCALDVFNKI-LDKDVISWTSLV 410



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 140/276 (50%), Gaps = 6/276 (2%)

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           D +  + +I  YA LG L  A  +FNE P ++ + W+S++ G+ +N    E L  + +M 
Sbjct: 67  DKYTWNIMISAYANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMW 126

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLE 323
             G    Q TL SVLRAC+ L+LL  G  +H + +K   + ++ +   L+DMY KC  L 
Sbjct: 127 SDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLL 186

Query: 324 DAMSVFSRMI-QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
           +A  +F  +  +K+ + W+ M++G AQNG S +A++ F+ M+   ++ N+ T   +L AC
Sbjct: 187 EAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTAC 246

Query: 383 SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
           +       G         + G  P     S ++D+  + G L  A  ++  M  + D V 
Sbjct: 247 TSISAYAFG-RQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEID-DVVC 304

Query: 443 WRALLGACKVHRNTDLAICAAKKILNLDPQ-DPGTY 477
           W +++  C  H   + A+    K+ N D + D  TY
Sbjct: 305 WNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTY 340


>gi|356537359|ref|XP_003537195.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g13770, mitochondrial-like
           [Glycine max]
          Length = 600

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/590 (37%), Positives = 359/590 (60%), Gaps = 8/590 (1%)

Query: 60  KAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMH 119
           +A+  M   G+  +   Y  ++  C+++ A +E + VH H +   + P  +L   L+  +
Sbjct: 12  EALIQMTLXGLDMNLQDYNTVLNECVSKRAFKEGQRVHAHTIKTHYLPCVYLWTRLIVFY 71

Query: 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
            K   L +A+ + ++MPERNVVSWT MISAY       +AL +L+ +LR G   N FT++
Sbjct: 72  TKCDSLGDARHVLNEMPERNVVSWTAMISAYSQRGYASQALSILVQILRSGTESNEFTFA 131

Query: 180 AV---LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
            +   +       +   +H  IIK+ F++ V+V S+L+D+YAK G++  A  +F  +P R
Sbjct: 132 TMPYFMYRFLGFCLREAIHSLIIKLNFKAHVYVGSSLLDMYAKDGKIHEARGIFECLPER 191

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           D+V   +II G+AQ  D+DE L L+ R++R G  ++  T TSVL A +GLA L+ G QVH
Sbjct: 192 DVVSCTAIISGYAQ-LDLDEELELFLRLQREGMXSNYVTYTSVLTALSGLAALDHGKQVH 250

Query: 297 VHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
            H+L  +    +IL N+L+DMY KCG+L  A  +F  M ++ VISW+ M+ G +++G  +
Sbjct: 251 NHLLCSEVPSFVILQNSLIDMYSKCGNLTYARRIFDTMRERTVISWNAMLVGYSKHGERR 310

Query: 355 EALKLFESMK-VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF-YGIDPGREHYS 412
           E L+LF  M+  +++KP+ +T++ VL  CSH G  + G + F  M      + P  + Y 
Sbjct: 311 EVLELFNLMRDENKVKPDSVTVLAVLSGCSHGGQEDKGMDIFYDMTSGKISVQPDTKRYG 370

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           C++DLLGRAG+++EA + I ++P+EP A     LLGAC VH N  +      ++L  +P+
Sbjct: 371 CVVDLLGRAGRVEEAFEFIKKIPFEPSAAICGCLLGACSVHSNLGIGEFVGHRLLEFEPE 430

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           + G Y++LSN+YA++ +W++V  +R  M  + +TKEPG S IEV++ +  F+ +D SHP+
Sbjct: 431 NAGNYVILSNLYASAGRWEDVTSLRNLMLKKAVTKEPGRSLIEVDQVLQTFHPSDCSHPR 490

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
            ++++   + L+ +    GY PD + VL D++ EQKE  +  HSEKLA+ FGL++  +  
Sbjct: 491 REEVSAKXQELLVRFKEAGYFPDLSCVLHDVDEEQKEKILLSHSEKLALSFGLIATPESV 550

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
            I + KNLRIC DCH FAK  +K+ ++ + +RD   +H      CSCGDY
Sbjct: 551 LICVIKNLRICVDCHNFAKYISKIYSREVSLRDKNWFHGIVGEKCSCGDY 600



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 120/288 (41%), Gaps = 31/288 (10%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111
           Q DL   ++    +Q  G+ ++ VTY  ++       A++  K VHNH+L         L
Sbjct: 205 QLDLDEELELFLRLQREGMXSNYVTYTSVLTALSGLAALDHGKQVHNHLLCSEVPSFVIL 264

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG- 170
            N L++M+ K   L  A+ +FD M ER V+SW  M+  Y       + LEL   M  E  
Sbjct: 265 QNSLIDMYSKCGNLTYARRIFDTMRERTVISWNAMLVGYSKHGERREVLELFNLMRDENK 324

Query: 171 VRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           V+P+  T  AVL  C         H G    G +    + S  I +              
Sbjct: 325 VKPDSVTVLAVLSGCS--------HGGQEDKGMDIFYDMTSGKISVQP------------ 364

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
                 D   +  ++    +   V+EA    K++    F    +    +L AC+  + L 
Sbjct: 365 ------DTKRYGCVVDLLGRAGRVEEAFEFIKKIP---FEPSAAICGCLLGACSVHSNLG 415

Query: 291 LGTQVHVHVLKYDHDLILNNALL-DMYCKCGSLEDAMSVFSRMIQKDV 337
           +G  V   +L+++ +   N  +L ++Y   G  ED  S+ + M++K V
Sbjct: 416 IGEFVGHRLLEFEPENAGNYVILSNLYASAGRWEDVTSLRNLMLKKAV 463


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/479 (44%), Positives = 306/479 (63%), Gaps = 8/479 (1%)

Query: 173 PNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P+  TY  +++AC  L+ LR+   LH    K GF + VFV+++L+ +Y   G   +A  V
Sbjct: 114 PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKV 173

Query: 230 FNEMPTR--DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
           F+EMP R  +LV WNS++  FA N   +E L ++  M    FA D  T+ SVL AC    
Sbjct: 174 FDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFG 233

Query: 288 LLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMI 344
            L LG +VHV+V K     +  ++NAL+D+Y KCGS+ DA  +F  M + + V+SW+++I
Sbjct: 234 ALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLI 293

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI 404
            GLA NG+ +EAL+LF  M+  ++ P  IT+VGVL+ACSH G V+DG+ +F  MK+ YGI
Sbjct: 294 VGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGI 353

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAK 464
            P  EH  CM+DLLGRAG+++EA   I  MP EP+AV WR LLG+C +H+  +L   A +
Sbjct: 354 SPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWE 413

Query: 465 KILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFN 524
           +++ LDP   G Y+LLSN+YA    W +V  +RKTM    + K PG S +E+   ++ F 
Sbjct: 414 RLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFV 473

Query: 525 VADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFG 584
           + D SHP+ ++I + L  + ++L   GY P T+ VL D+E E+KE ++ YHSE+LAI F 
Sbjct: 474 MGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFA 533

Query: 585 LMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L+    G  IRI KNLR+CGDCH    L +K+ ++ I++RD  R+HHFQ G CSC DYW
Sbjct: 534 LLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 592



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 154/306 (50%), Gaps = 12/306 (3%)

Query: 56  PRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNIL 115
           PR   A+   +      D+ TY  LI+ C    A+ E + +H      GF    F+ N L
Sbjct: 98  PRPRVALELHRRRLALPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSL 157

Query: 116 LNMHVKFSLLEEAQVLFDQMP--ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
           ++++    L E A  +FD+MP   RN+VSW +M++++      ++ L +   ML     P
Sbjct: 158 VHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAP 217

Query: 174 NMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           + FT  +VL AC    +L + R++H  + KVG   +  V +ALID+YAK G + +A  +F
Sbjct: 218 DGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIF 277

Query: 231 NEMP-TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
            EM   R +V W S+I G A N    EAL L+  M+R      + T+  VL AC+   L+
Sbjct: 278 EEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLV 337

Query: 290 ELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMS-VFSRMIQKDVISWSTMI 344
           + G + +   +K D+ +         ++D+  + G +E+A   + +  ++ + + W T++
Sbjct: 338 DDGFR-YFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLL 396

Query: 345 SGLAQN 350
              A +
Sbjct: 397 GSCAMH 402


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/595 (36%), Positives = 346/595 (58%), Gaps = 25/595 (4%)

Query: 64  AMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123
           +++ HG+     T+  ++K C    + +    +H+ V+  GF  +   +  LL+++    
Sbjct: 101 SIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSG 160

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
            L +A  LFD++P+R+VV+WT + S Y  +  + +A++L   M+  GV+P+ +    VL 
Sbjct: 161 RLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLS 220

Query: 184 ACDSLIILRQLHCGIIKVG-----------FESDVFVRSALIDIYAKLGELRNAECVFNE 232
           AC        +H G +  G            + + FVR+ L+++YAK G++  A  VF+ 
Sbjct: 221 AC--------VHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDS 272

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           M  +D+V W+++I G+A NS   E + L+ +M +     DQ ++   L +C  L  L+LG
Sbjct: 273 MVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG 332

Query: 293 ----TQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
               + +  H  ++  +L + NAL+DMY KCG++     VF  M +KD++  +  ISGLA
Sbjct: 333 EWGISLIDRH--EFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLA 390

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           +NG+ + +  +F   +   I P+  T +G+L  C HAG ++DG   F ++   Y +    
Sbjct: 391 KNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTV 450

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
           EHY CM+DL GRAG L +A +LI +MP  P+A+ W ALL  C++ ++T LA    K+++ 
Sbjct: 451 EHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIA 510

Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
           L+P + G Y+ LSNIY+   +WDE AEVR  M  +G+ K PG SWIE+  ++H F   D 
Sbjct: 511 LEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDK 570

Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
           SHP  DKI   L+ L  ++  +G+ P T +V  D+E E+KE  + YHSEKLA+  GL+S 
Sbjct: 571 SHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLIST 630

Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             G+ IR+ KNLR+CGDCH   KL +K+  + IV+RD  R+H F +G+CSC DYW
Sbjct: 631 DHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 109/399 (27%), Positives = 203/399 (50%), Gaps = 10/399 (2%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
            V   K +H  +++     +TFLVN+LL   + F   + + +LF      N+  + ++I+
Sbjct: 25  TVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLIN 84

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFES 205
            + +  +  + L+L + + + G+  + FT+  VL+AC    S  +   LH  ++K GF  
Sbjct: 85  GFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNH 144

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           DV   ++L+ IY+  G L +A  +F+E+P R +V W ++  G+  +    EA++L+K+M 
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMV 204

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQV--HVHVLKYDHDLILNNALLDMYCKCGSLE 323
             G   D   +  VL AC  +  L+ G  +  ++  ++   +  +   L+++Y KCG +E
Sbjct: 205 EMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKME 264

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
            A SVF  M++KD+++WSTMI G A N + +E ++LF  M    +KP+  +IVG L +C+
Sbjct: 265 KARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCA 324

Query: 384 HAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
             G ++ G W    S+   +         + +ID+  + G +    ++  EM  +   + 
Sbjct: 325 SLGALDLGEWG--ISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIM 382

Query: 443 WRALLGACK-VHRNTDLAICAAKKILNLDPQDPGTYILL 480
             A+ G  K  H     A+    + L + P D  T++ L
Sbjct: 383 NAAISGLAKNGHVKLSFAVFGQTEKLGISP-DGSTFLGL 420


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/567 (40%), Positives = 351/567 (61%), Gaps = 8/567 (1%)

Query: 85  LARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM--HVKFSLLEEAQVLFDQMPERNVVS 142
           L  + +EE K VH HVL  G   +TF ++ L+      K+  ++ A  +F Q+ E +   
Sbjct: 6   LHNNHMEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFD 65

Query: 143 WTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGII 199
           + TMI    +    ++AL L + M+  GV P+ FTY  VL+AC  L ++    Q+H  + 
Sbjct: 66  YNTMIRGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVF 125

Query: 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN 259
           K+G E DV V+++LI++Y K GE++NA  VFN M  + +  W++IIG  A     +E L 
Sbjct: 126 KMGLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLM 185

Query: 260 LYKRMKRAGFA-ADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNALLDMY 316
           L  +M   G    ++STL +VL ACT L   +LG  +H  +L+   +L  ++  +L+DMY
Sbjct: 186 LLGKMSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMY 245

Query: 317 CKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIV 376
            K G LE  + VF  M +K+  S++ MISGLA +G  +EALK+F  M    + P+ +  V
Sbjct: 246 VKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYV 305

Query: 377 GVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY 436
           GV  ACSHAG VE+G   FKSM+  + I+P  +HY CM+DLLGR G L+EA +LI  M  
Sbjct: 306 GVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSI 365

Query: 437 EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEV 496
           +P+ V WR+LL ACKVH N ++   AA+ +  L+  + G Y++L+N+YA +QKWD+VA++
Sbjct: 366 KPNDVIWRSLLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKI 425

Query: 497 RKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDT 556
           R  +  R + + PG S IE  ++++ F   D S PQ + I + +  +  +L   GY PDT
Sbjct: 426 RTKLAERNLVQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFEGYIPDT 485

Query: 557 NYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKM 616
           + VL D++ E+K++ +++HS+KLAI FGL+  ++G  +RI +NLR+C DCHT+ K  + +
Sbjct: 486 SQVLLDVDDEEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMI 545

Query: 617 ENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             + I +RD +R+HHF++G+CSC DYW
Sbjct: 546 YEREITVRDRLRFHHFKNGSCSCKDYW 572



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 144/318 (45%), Gaps = 35/318 (11%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           GV  D  TY  ++K C     V+E   VH HV   G E +  + N L+NM+ K   ++ A
Sbjct: 93  GVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEGDVIVQNSLINMYGKCGEIKNA 152

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDS 187
             +F+ M E++V SW+ +I A+   +M ++ L LL  M  EG  R    T   VL AC  
Sbjct: 153 CDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKMSSEGRCRVEESTLVNVLSACTH 212

Query: 188 L---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L    + + +H  +++   E +V V+++LID+Y K G L     VF  M  ++   +  +
Sbjct: 213 LGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVM 272

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
           I G A +    EAL ++  M   G A D      V  AC+   L+E G Q     ++++H
Sbjct: 273 ISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSACSHAGLVEEGLQC-FKSMQFEH 331

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
                                       I+  V  +  M+  L + G  +EA +L +SM 
Sbjct: 332 K---------------------------IEPTVQHYGCMVDLLGRFGMLKEAYELIKSMS 364

Query: 365 VSRIKPNYITIVGVLFAC 382
              IKPN +    +L AC
Sbjct: 365 ---IKPNDVIWRSLLSAC 379


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/597 (37%), Positives = 346/597 (57%), Gaps = 15/597 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+     M  HG R ++ T+   +K C A          H  +   G   E F+   L+
Sbjct: 23  QALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLI 82

Query: 117 NMHVKFSLLEEAQVLFDQ--MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           +M+ K SL++ A+ +F++     +  V +  ++S Y        A+ L   M  EGV  N
Sbjct: 83  SMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVN 142

Query: 175 MFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
             T   ++ AC S I L     LHC  +K GF+SDV V +  I +Y K G +  A+ +F+
Sbjct: 143 SVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFD 202

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           EMP + L+ WN+++ G+AQN      L LY+ M   G   D  TL  VL +C  L    +
Sbjct: 203 EMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSV 262

Query: 292 GTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G +V   +    +  +  LNNAL++MY +CG+L  A +VF  M ++ ++SW+ +I G   
Sbjct: 263 GHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGM 322

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           +G+ + A++LF+ M  S I+P+    V VL ACSHAG  + G  +FK MK+ Y ++PG E
Sbjct: 323 HGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPE 382

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
           HYSCM+DLLGRAG+L+EA  LI  MP +PD   W ALLGACK+H+N +LA  A ++++ L
Sbjct: 383 HYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIEL 442

Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
           +P++ G Y+LLSNIY+N+     V  +R  M+ + + K+PGCS++E+  ++H F V D +
Sbjct: 443 EPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRN 502

Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDS---IQYHSEKLAIVFGLM 586
           H Q D+I + L+ L   ++     P+     +D   E  +D    +  HSEKLA+ FGL+
Sbjct: 503 HLQSDEIYRVLEELEAIIMQEFGKPE-----KDNREESNKDGFTRVGVHSEKLAVAFGLL 557

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + T G  + I KNLRIC DCH F K+ +K+ ++ + +RD  R+HHF++G+CSC DYW
Sbjct: 558 NTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 614



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 199/377 (52%), Gaps = 13/377 (3%)

Query: 143 WTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGII 199
           W T +          +AL L   MLR G RPN FT+   L++C +L   I+  Q H  I 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNE-MPTRDLVV-WNSIIGGFAQNSDVDEA 257
           KVG   + FV++ LI +Y K   + NA  VF E   +R L V +N+++ G+  NS   +A
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 258 LNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDM 315
           + L+++M   G   +  TL  ++ AC     LELG+ +H   LKY  D D+ + N  + M
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITM 187

Query: 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITI 375
           Y KCGS+  A  +F  M  K +ISW+ M+SG AQNG +   L+L+ +M ++ + P+ +T+
Sbjct: 188 YMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTL 247

Query: 376 VGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
           VGVL +C++ G    G    FK     +  +P   +   +I++  R G L +A  +   M
Sbjct: 248 VGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNN--ALINMYARCGNLTKAQAVFDGM 305

Query: 435 PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT-YILLSNIYANSQKWDEV 493
           P E   V+W A++G   +H + ++A+   K+++    +  GT ++ + +  +++   D+ 
Sbjct: 306 P-ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQG 364

Query: 494 AEVRKTMRARGITKEPG 510
            E  K M+ R    EPG
Sbjct: 365 LEYFKMMK-RNYQLEPG 380


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/577 (39%), Positives = 335/577 (58%), Gaps = 33/577 (5%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G R D+ TY  ++K C     +    L+H  VL  G +   F+ N L+ M+ K   L EA
Sbjct: 114 GFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEA 173

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +FD+M  ++VVSW +M++ Y      D ALE+   M   G +P+  T ++++ A    
Sbjct: 174 RRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPA---- 229

Query: 189 IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
                    +     E+ ++V                 E +F  +  ++L+ WN +I  +
Sbjct: 230 ---------VANTSSENVLYV-----------------EKIFVNLERKNLISWNVMIRVY 263

Query: 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDL 306
            +NS   +A++LY +M++     D  T  SVL AC  L+ L LG ++H +V K     +L
Sbjct: 264 MKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNL 323

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
           +L N+L+DMY +CG L+DA  VF RM  +DV SW+++IS     G    A+ LF  M  S
Sbjct: 324 LLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNS 383

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
              P+ I  V +L ACSH+G +++G  +FK M   Y I P  EHY+C++DLLGRAG++ E
Sbjct: 384 GQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDE 443

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           A  +I +MP EP+   W  LL +C+V  N D+ I AA  +L L P+  G Y+LLSNIYA 
Sbjct: 444 AYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAK 503

Query: 487 SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
           + +W EV E+R  M+ + I K PG S +E+N Q+H F   D+SHPQ  +I + L  L+ K
Sbjct: 504 AGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVAK 563

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           +  +GY P+T+  L D+E E KE  +  HSEKLAIVF L++ TQ   IRI KNLR+CGDC
Sbjct: 564 MKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLN-TQEYQIRITKNLRVCGDC 622

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           H  AKL +K+  + I++RD  R+HHF+DG CSCGDYW
Sbjct: 623 HIAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 159/322 (49%), Gaps = 36/322 (11%)

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           +FD+M +RNVV +  MI +Y +    D  L +   M+  G RP+ +TY  VL+AC     
Sbjct: 75  VFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSEN 134

Query: 191 LRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           LR    +H  ++KVG + ++FV + LI +Y K G L  A  VF+EM  +D+V WNS++ G
Sbjct: 135 LRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAG 194

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI 307
           +A N   D+AL + + M+  G   D  T+ S++ A    +     ++  ++V K      
Sbjct: 195 YAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTS-----SENVLYVEK------ 243

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
                               +F  + +K++ISW+ MI    +N    +A+ L+  M+  R
Sbjct: 244 --------------------IFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCR 283

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           ++P+ IT   VL AC     +  G    + ++K   + P     + +ID+  R G L +A
Sbjct: 284 VEPDAITFASVLPACGDLSALLLGRRIHEYVEK-KKLCPNLLLENSLIDMYARCGCLDDA 342

Query: 428 VKLIHEMPYEPDAVTWRALLGA 449
            ++   M +  D  +W +L+ A
Sbjct: 343 KRVFDRMKFR-DVASWTSLISA 363



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 133/266 (50%), Gaps = 10/266 (3%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           L++LH  I  +    +  +   L+  YA  GE      VF+EM  R++V +N +I  +  
Sbjct: 37  LKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVN 96

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
           N   D+ L +++ M   GF  D  T   VL+AC+    L  G  +H  VLK   D +L +
Sbjct: 97  NHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFV 156

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            N L+ MY KCG L +A  VF  MI KDV+SW++M++G A N    +AL++   M+    
Sbjct: 157 GNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQ 216

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID-PGREHYSCMIDLLGRAGKLQEA 427
           KP+  T+  ++ A ++        N     K F  ++      ++ MI +  +     +A
Sbjct: 217 KPDGCTMASLMPAVANTS----SENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQA 272

Query: 428 VKLIHEMP---YEPDAVTWRALLGAC 450
           V L  +M     EPDA+T+ ++L AC
Sbjct: 273 VDLYLQMEKCRVEPDAITFASVLPAC 298


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/604 (36%), Positives = 340/604 (56%), Gaps = 37/604 (6%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN----------------------- 113
           +   I+ C  R ++   K +H  ++  GF  + F+ N                       
Sbjct: 47  FTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMR 106

Query: 114 --------ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
                   IL+N +V+   L  A+ +FD+MP+R + +W  MI+     + N++ L L   
Sbjct: 107 KKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFRE 166

Query: 166 MLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           M   G  P+ +T  +V        S+ I +Q+H   IK G E D+ V S+L  +Y + G+
Sbjct: 167 MHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGK 226

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           L++ E V   MP R+LV WN++I G AQN   +  L LYK MK +G   ++ T  +VL +
Sbjct: 227 LQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSS 286

Query: 283 CTGLALLELGTQVHVHVLKYDHDLILNNA--LLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           C+ LA+   G Q+H   +K     ++     L+ MY KCG L DA   FS    +D + W
Sbjct: 287 CSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMW 346

Query: 341 STMISGLAQNGYSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           S+MIS    +G   EA++LF +M + + ++ N +  + +L+ACSH+G  + G   F  M 
Sbjct: 347 SSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMV 406

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
           + YG  PG +HY+C++DLLGRAG L +A  +I  MP + D V W+ LL AC +H+N ++A
Sbjct: 407 EKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMA 466

Query: 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQ 519
               K+IL +DP D   Y+LL+N++A++++W +V+EVRK+MR + + KE G SW E   +
Sbjct: 467 QRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGE 526

Query: 520 IHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKL 579
           +H F + D S  +  +I  +LK L  ++   GY PDT  VL D++ E+KE  +  HSEKL
Sbjct: 527 VHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKL 586

Query: 580 AIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
           A+ F LM L +G  IRI KNLR+C DCH   K  + ++N+ I +RD  R+HHF +G CSC
Sbjct: 587 AVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSC 646

Query: 640 GDYW 643
           GDYW
Sbjct: 647 GDYW 650



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 173/354 (48%), Gaps = 14/354 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++    +F +  +     + MH +   G   D  T   +        +V   + +H +
Sbjct: 145 NAMIAGLIQFEFNEEGLSLFREMHGL---GFSPDEYTLGSVFSGSAGLRSVSIGQQIHGY 201

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
            +  G E +  + + L +M+++   L++ +++   MP RN+V+W T+I         +  
Sbjct: 202 TIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETV 261

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDI 216
           L L   M   G RPN  T+  VL +C  L I    +Q+H   IK+G  S V V S+LI +
Sbjct: 262 LYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISM 321

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQST 275
           Y+K G L +A   F+E    D V+W+S+I  +  +   DEA+ L+  M ++     ++  
Sbjct: 322 YSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVA 381

Query: 276 LTSVLRACTGLALLELGTQVH-VHVLKYDHDLILNN--ALLDMYCKCGSLEDAMSVFSRM 332
             ++L AC+   L + G ++  + V KY     L +   ++D+  + G L+ A ++   M
Sbjct: 382 FLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSM 441

Query: 333 -IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
            I+ D++ W T++S    +  ++ A ++F+  ++ +I PN  +   VL A  HA
Sbjct: 442 PIKTDIVIWKTLLSACNIHKNAEMAQRVFK--EILQIDPN-DSACYVLLANVHA 492


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/626 (38%), Positives = 360/626 (57%), Gaps = 43/626 (6%)

Query: 60  KAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLS---GGFEPETFLVNILL 116
           K++  ++   +  D V YA LI+ C A +A+  A+ +H+H+LS      +P  FL N+L+
Sbjct: 46  KSIQLLESRELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQP-PFLANLLI 104

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
            M+ K   L  A+ LF+ MP RNV +WT  ++A+     + +AL     M + G RP+  
Sbjct: 105 EMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRV 164

Query: 177 TYSAVLRACDSLIIL-----RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC--- 228
           T+S +L A   +        R++H      G   +V V +A+I +Y K G L +A     
Sbjct: 165 TFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFE 224

Query: 229 ----------------------------VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNL 260
                                       +F EM   D V WN++I  +AQ+    +AL+L
Sbjct: 225 ELQWKNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDL 284

Query: 261 YKRM-KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYC 317
           Y+ M      A  Q T  +V+  C  L+ L+ G  +H  V    +D +L+++NAL+ MY 
Sbjct: 285 YRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYG 344

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           KCG L++A+ VF  M  KD ISW+T+IS  A +G+S +AL L++ M +  +KP  +T VG
Sbjct: 345 KCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVG 404

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           +L ACSH G V DG ++F  M+  + I P   H+ C+IDLLGR G+L EA  ++  MP +
Sbjct: 405 LLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQ 464

Query: 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497
            +AV W +LLGACK H +    + AA ++++  P   G Y+LLSNIYA + +W +V ++R
Sbjct: 465 ANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIR 524

Query: 498 KTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTN 557
           K M ARG+ K PG SWIE+   +H F   DSSHPQ ++I   L  +++++ G+GY PDT+
Sbjct: 525 KIMAARGVKKSPGKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYVPDTS 584

Query: 558 YVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKME 617
            V  DLE E+KED +  HSEKLAIV+G M +     +RI KNLR+C DCHT  K  +++ 
Sbjct: 585 SVFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRIT 644

Query: 618 NQTIVIRDPIRYHHFQDGNCSCGDYW 643
            + IV+RD  R+H F++G+CSC DYW
Sbjct: 645 GRKIVVRDAARFHLFENGSCSCRDYW 670


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/588 (38%), Positives = 345/588 (58%), Gaps = 18/588 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKL---VHNHVLSGGFEP-ETFLVNILLNMHVKFSL 124
           G+R +  T+    K   A  A   + +   +H+  +  G+ P + F+    L+M+ K   
Sbjct: 5   GLRPNDFTFPSAFKA--AASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGR 62

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL--IFMLRE-GVRPNMFTYSAV 181
           L+ A+ LF +MP RNVV+W  +++   +A ++ + LE +   F LRE G  PN+ +  A 
Sbjct: 63  LKLARHLFGEMPNRNVVAWNAVMT---NAVLDGRPLETIEAYFGLREAGGLPNVVSACAF 119

Query: 182 LRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
             AC   + L    Q H  ++K GFE DV V ++++D Y K      A  VF+ M  R+ 
Sbjct: 120 FNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNS 179

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           V W S++  +AQN   +EA   Y   +R+G       ++S L  C GL  L LG  +H  
Sbjct: 180 VSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAV 239

Query: 299 VLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
            ++   D ++ + +AL+DMY KCG +EDA  +F    Q+++++W+ MI G A  G +Q A
Sbjct: 240 AVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNA 299

Query: 357 LKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           L +F+ M +     PNYIT+V V+ +CS  G  +DG+  F++M++ +GI+P  EHY+C++
Sbjct: 300 LLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVV 359

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           DLLGRAG  ++A ++I  MP  P    W ALLGACK+H  T+L   AA+K+  LDPQD G
Sbjct: 360 DLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSG 419

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
            ++LLSN++A++ +W E  ++RK M+  GI K+PGCSW+     +H F   D+ H   ++
Sbjct: 420 NHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNE 479

Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
           I   L  L +++   GY PDT Y L DLE E+KE  +  HSEKLA+ FGL+ +  G  IR
Sbjct: 480 IQALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKESEVFQHSEKLALAFGLICIPPGVPIR 539

Query: 596 IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           I KNLRIC DCH   K  + +  + I++RD  R+HHF+   CSCGDYW
Sbjct: 540 IMKNLRICVDCHRAFKFISGIVGREIIVRDNNRFHHFKQYQCSCGDYW 587



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 168/348 (48%), Gaps = 13/348 (3%)

Query: 166 MLREGVRPNMFTYSAVLRACDSL----IILRQLHCGIIKVGF-ESDVFVRSALIDIYAKL 220
           MLR G+RPN FT+ +  +A  S      I  Q+H   I+ G+   D FV  A +D+Y K 
Sbjct: 1   MLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKT 60

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           G L+ A  +F EMP R++V WN+++     +    E +  Y  ++ AG   +  +  +  
Sbjct: 61  GRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFF 120

Query: 281 RACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
            AC G   L LG Q H  V+K  ++ D+ + N+++D Y KC     A +VF  M  ++ +
Sbjct: 121 NACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSV 180

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
           SW +M++  AQNG  +EA   +   + S  +P    +   L  C+    +  G     ++
Sbjct: 181 SWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLG-RALHAV 239

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
                ID      S ++D+ G+ G +++A ++ +E P + + VTW A++G      +   
Sbjct: 240 AVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETP-QRNLVTWNAMIGGYAHIGDAQN 298

Query: 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWD---EVAEVRKTMRAR 503
           A+     ++      P  YI L N+  +  +     +  E+ +TMR R
Sbjct: 299 ALLVFDDMIRSGETAP-NYITLVNVITSCSRGGLTKDGYELFETMRER 345


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/626 (35%), Positives = 342/626 (54%), Gaps = 75/626 (11%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
           A+ +H   +  G   + F+ + LL+ +++      A+ +FD+MPE+NVV W+ +I+ Y  
Sbjct: 36  ARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSA 95

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVL-------RACDSLIIL-------------- 191
               + A  LL  M   GV PN+ T++ ++       RA D++  L              
Sbjct: 96  RGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATG 155

Query: 192 -----------------RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
                            +Q+H  ++K G   D  V +ALID+Y K G       VF+E  
Sbjct: 156 VSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESS 215

Query: 235 TRDLVVWNSIIGGFAQNSDVDEAL-----------------------------------N 259
             D+   N+++ G ++N+ V EAL                                   +
Sbjct: 216 HMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVD 275

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYC 317
           L++ M+  G   +  T+  VL A   +A L  G   H   L+  + HD+ + +AL+DMY 
Sbjct: 276 LFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYA 335

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           KCG    A ++F  M  ++V+SW+ MI G A +G +  A++LF SM+  + KP+ +T   
Sbjct: 336 KCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTC 395

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           VL ACS AG  E+G  +F  M++ +GI P  EHY+CM+ LLGR+GKL EA  LI+EMP+E
Sbjct: 396 VLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFE 455

Query: 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497
           PD+  W +LLG+C+V+ N  LA  AA+K+  L+P + G Y+LLSNIYA+ + WD V  VR
Sbjct: 456 PDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVR 515

Query: 498 KTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTN 557
             M+  G+ KE GCSWIE+  ++H     D+SHP +  I + L  L  ++  +G+AP  +
Sbjct: 516 DEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTAITEKLNQLTIEMNRLGFAPSRD 575

Query: 558 YVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKME 617
           +VL D+E ++K++ +  HSEKLA+  GL+S   G  +R+ KNLRICGDCH   K  +  E
Sbjct: 576 FVLHDVEEQEKDNILAVHSEKLAVALGLISTRPGTPLRVIKNLRICGDCHEAMKFISSFE 635

Query: 618 NQTIVIRDPIRYHHFQDGNCSCGDYW 643
            + I +RD  R+HHF+DG CSCGDYW
Sbjct: 636 QREISVRDTNRFHHFKDGKCSCGDYW 661



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 162/371 (43%), Gaps = 80/371 (21%)

Query: 165 FMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           F+      P+     + L++C +  + R LH   +  G   D FV S+L+  Y +LG   
Sbjct: 10  FLRHVSFPPDPHLLPSALKSCPAQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATG 69

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA----------------- 267
            A  VF+ MP +++V W+++I G++   D + A  L ++M+ A                 
Sbjct: 70  AARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLN 129

Query: 268 ------------------GFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLI 307
                             GF  D + ++  L A   +  + +G QVH +V+K     D  
Sbjct: 130 RSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDAC 189

Query: 308 LNNALLDMYCKCGSLEDAMSVF-----------------------------------SRM 332
           +  AL+DMY KCG  ++ + VF                                    R 
Sbjct: 190 VVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRG 249

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
           ++ +V+SW+++++   QNG   EA+ LF +M+   ++PN +TI  VL A ++   +  G 
Sbjct: 250 VELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGR 309

Query: 393 N-HFKSMKKFYGIDPGREHY--SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           + H  S++K +  D     Y  S ++D+  + GK + A  +   MP   + V+W A++G 
Sbjct: 310 SAHCFSLRKGFLHDV----YVGSALVDMYAKCGKARHARTIFDAMPSR-NVVSWNAMIGG 364

Query: 450 CKVHRNTDLAI 460
             +H +   A+
Sbjct: 365 YAMHGDAANAV 375



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 2/161 (1%)

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCK 318
           +LY  ++   F  D   L S L++C    L        V V     D  + ++LL  Y +
Sbjct: 6   SLYHFLRHVSFPPDPHLLPSALKSCPAQPLARALHAAAV-VSGLAEDPFVASSLLHSYIR 64

Query: 319 CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
            G+   A SVF RM +K+V+ WS +I+G +  G ++ A  L E M+ + ++PN IT  G+
Sbjct: 65  LGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGL 124

Query: 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           +   + +G   D       M    G  P     SC +  +G
Sbjct: 125 VSGLNRSGRALDAVTALVRMHS-EGFFPDATGVSCALSAVG 164


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/618 (35%), Positives = 354/618 (57%), Gaps = 25/618 (4%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARH--AVEEAKLVH 97
           +SL+  + R   + ++ R    M      G+  +S     +IKCC  R    ++ A+ VH
Sbjct: 179 NSLVSGYVRAGAREEMVRVFAMMRR---GGMGLNSFALGSVIKCCSGRGDGTMDIAEAVH 235

Query: 98  NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK--- 154
             V+  G + + FLV+ +++M+ K   L EA  LF  + E NVV + TMI+ +C  +   
Sbjct: 236 GCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVI 295

Query: 155 ---MNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVF 208
              +  +AL L   +   G++P  FT+S+VLRAC+    L   +Q+H  +IK  F+ D F
Sbjct: 296 GKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDF 355

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           + SALID+Y   G + +    F   P  D+V W +++ G  QN   ++AL+L+     AG
Sbjct: 356 IGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAG 415

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAM 326
              D  T++SV+ AC  LA+   G Q+     K  +D   ++ N+ + MY + G ++ A 
Sbjct: 416 LKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAAT 475

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
             F  M   DV+SWS +IS  AQ+G +++AL  F+ M  +++ PN IT +GVL ACSH G
Sbjct: 476 RRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGG 535

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            V++G  ++++M K YG+ P  +H +C++DLLGRAG+L +A   I    +  D V WR+L
Sbjct: 536 LVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNSIFHADPVIWRSL 595

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           L +C++HR+ +     A +I+ L+P    +Y++L N+Y ++ +    ++ R  M+ RG+ 
Sbjct: 596 LASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQRGVK 655

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           KEPG SWIE+   +H+F   D SHP+   I   L+ ++ ++              D E  
Sbjct: 656 KEPGLSWIELKCGVHSFVAGDKSHPESSAIYTKLEEMLSRI--------EKLATTDTEIS 707

Query: 567 QKEDSI-QYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           ++E ++   HSEKLA+  G++ L Q   IR+ KNLR+C DCH+  KL +K EN+ I++RD
Sbjct: 708 KREQNLMNCHSEKLAVALGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISKSENREIILRD 767

Query: 626 PIRYHHFQDGNCSCGDYW 643
           PIR+HHF+DG+CSC DYW
Sbjct: 768 PIRFHHFRDGSCSCADYW 785



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 214/431 (49%), Gaps = 29/431 (6%)

Query: 37  RNSSS---LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEA 93
           RN+ S   L+D ++R   +   P +++ +   +  GV  D  +YA  +  C     +   
Sbjct: 72  RNAVSFNLLIDAYSR---EGLAPLSLETLARARRAGVDVDRFSYAAALAACSRAGHLRAG 128

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
           + VH   +  G     F+ N L++M+ K   + EA+ +FD   ER+ VSW +++S Y  A
Sbjct: 129 RAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRA 188

Query: 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACD-----SLIILRQLHCGIIKVGFESDVF 208
              ++ + +   M R G+  N F   +V++ C      ++ I   +H  +IK G +SDVF
Sbjct: 189 GAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVF 248

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV------DEALNLYK 262
           + SA+ID+YAK G L  A  +F  +   ++V++N++I GF +   V       EAL LY 
Sbjct: 249 LVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYS 308

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCG 320
            ++  G    + T +SVLRAC     LE G Q+H  V+KY    D  + +AL+D+Y   G
Sbjct: 309 EVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSG 368

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
            +ED    F    + D+++W+ M+SG  QN   ++AL LF     + +KP+  TI  V+ 
Sbjct: 369 CMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMN 428

Query: 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM----IDLLGRAGKLQEAVKLIHEMPY 436
           AC+       G        + +    G + ++ M    + +  R+G +  A +   EM  
Sbjct: 429 ACASLAVARAG-----EQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMES 483

Query: 437 EPDAVTWRALL 447
             D V+W A++
Sbjct: 484 H-DVVSWSAVI 493



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 184/355 (51%), Gaps = 17/355 (4%)

Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
           FL N LL  + +      A+ L D+MP RN VS+  +I AY    +   +LE L    R 
Sbjct: 44  FLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRA 103

Query: 170 GVRPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           GV  + F+Y+A L AC     L   R +H   I  G  S VFV ++L+ +Y+K GE+  A
Sbjct: 104 GVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEA 163

Query: 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
             VF+    RD V WNS++ G+ +    +E + ++  M+R G   +   L SV++ C+G 
Sbjct: 164 RRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGR 223

Query: 287 --ALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
               +++   VH  V+K   D D+ L +A++DMY K G+L +A ++F  + + +V+ ++T
Sbjct: 224 GDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNT 283

Query: 343 MISGLAQN------GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HF 395
           MI+G  +         + EAL L+  ++   ++P   T   VL AC+ AG++E G   H 
Sbjct: 284 MIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHG 343

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           + +K  Y         S +IDL   +G +++  +     P + D VTW A++  C
Sbjct: 344 QVIK--YTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSP-KHDIVTWTAMVSGC 395


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/622 (39%), Positives = 351/622 (56%), Gaps = 64/622 (10%)

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQMPER 138
           IK C    ++ E K VH  ++  G   +  +   +L +     F  +  A  +FDQ+PER
Sbjct: 22  IKAC---KSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPER 78

Query: 139 NVVSWTTMISAYCDAKMNDKALE-LLIF--MLREG-VRPNMFTYSAVLRACDSLIIL--- 191
           N  +W T+I A   A+  D+ L+ LL+F  ML E  V PN FT+ +VL+AC  +  L   
Sbjct: 79  NCFAWNTVIRAL--AETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEG 136

Query: 192 RQLHCGIIKVGFESDVFVRSAL-------------------------------------- 213
           +Q+H  ++K G   D FV + L                                      
Sbjct: 137 KQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGRE 196

Query: 214 ---------IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
                    +D YA++G L+ A  +F+ M  R +V WN +I G+AQN    EA+ ++ RM
Sbjct: 197 FNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRM 256

Query: 265 KRAG-FAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGS 321
            + G    ++ TL SVL A + L +LELG  VH++  K     D +L +AL+DMY KCGS
Sbjct: 257 MQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGS 316

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
           +E A+ VF R+ Q +VI+W+ +I GLA +G + +       M+   I P+ +T + +L A
Sbjct: 317 IEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSA 376

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
           CSHAG V++G + F  M    G+ P  EHY CM+DLLGRAG L+EA +LI  MP +PD V
Sbjct: 377 CSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDV 436

Query: 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
            W+ALLGA K+H+N  + + AA+ ++ + P D G Y+ LSN+YA+S  WD VA VR  M+
Sbjct: 437 IWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMK 496

Query: 502 ARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQ 561
              I K+PGCSWIE++  IH F V D SH +   I+  L+ +  KL   G+ PDT  VL 
Sbjct: 497 DMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTTQVLL 556

Query: 562 DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTI 621
            ++ + KE  + YHSEK+A+ FGL+S      + I KNLRIC DCH+  KL +KM  + I
Sbjct: 557 KMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISKMYERKI 616

Query: 622 VIRDPIRYHHFQDGNCSCGDYW 643
           VIRD  R+HHF+ G+CSC DYW
Sbjct: 617 VIRDRKRFHHFEHGSCSCMDYW 638



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 143/332 (43%), Gaps = 55/332 (16%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V  +  T+  ++K C     + E K VH  +L  G   + F+V  LL M+V    +E+A 
Sbjct: 113 VEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDAN 172

Query: 130 V-----------------------------------------------LFDQMPERNVVS 142
           V                                               LFD+M +R+VVS
Sbjct: 173 VLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVS 232

Query: 143 WTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSLIIL---RQLHCGI 198
           W  MIS Y       +A+E+   M++ G V PN  T  +VL A   L +L   + +H   
Sbjct: 233 WNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYA 292

Query: 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEAL 258
            K     D  + SAL+D+YAK G +  A  VF  +P  +++ WN++IGG A +   ++  
Sbjct: 293 EKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIF 352

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH---VHVLKYDHDLILNNALLDM 315
           N   RM++ G +    T  ++L AC+   L++ G       V+ +     +     ++D+
Sbjct: 353 NYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDL 412

Query: 316 YCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
             + G LE+A  +   M ++ D + W  ++  
Sbjct: 413 LGRAGYLEEAEELILNMPMKPDDVIWKALLGA 444



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 27/206 (13%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ   V  + VT   ++        +E  K VH +        +  L + L++M+ K   
Sbjct: 257 MQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGS 316

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE---GVRPNMFTYSAV 181
           +E+A  +F+++P+ NV++W  +I       M+ KA ++  ++ R    G+ P+  TY A+
Sbjct: 317 IEKAIQVFERLPQNNVITWNAVIGGLA---MHGKANDIFNYLSRMEKCGISPSDVTYIAI 373

Query: 182 LRACDSLIILRQLHCGII------------KVGFESDVFVRSALIDIYAKLGELRNAECV 229
           L AC         H G++             VG +  +     ++D+  + G L  AE +
Sbjct: 374 LSACS--------HAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEEL 425

Query: 230 FNEMPTR-DLVVWNSIIGGFAQNSDV 254
              MP + D V+W +++G    + ++
Sbjct: 426 ILNMPMKPDDVIWKALLGASKMHKNI 451


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/608 (34%), Positives = 351/608 (57%), Gaps = 9/608 (1%)

Query: 42  LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL 101
           ++  +T++ ++ +   A+K    M+    +    T+A ++   +    V   + +H   +
Sbjct: 215 MITGYTKYGFREE---ALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAI 271

Query: 102 SGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALE 161
              +  + F+ N LL+ + K   ++ A+ LFD+MPE + VS+  +I+ Y      +K+ +
Sbjct: 272 KTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFD 331

Query: 162 LLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYA 218
           L   +         F ++ +L       +L + RQ H   +     S+V V +AL+D+YA
Sbjct: 332 LFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYA 391

Query: 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278
           K  +  +A  +F  +  R+ V W +II  + Q    +EAL ++K M R     DQ+T  S
Sbjct: 392 KCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFAS 451

Query: 279 VLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD 336
            L+A   LA + LG Q+H  V++      +   + L+DMY  CGS++DA+ VF  M  ++
Sbjct: 452 TLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRN 511

Query: 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
           ++ W+ +IS  +QNG ++     F  M  S + P+ ++ + VL ACSH G VE    +F 
Sbjct: 512 IVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFN 571

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
           SM + Y +DP R+HY+ MID+L R+G+  EA  LI EMP+EPD V W ++L +C++H+N 
Sbjct: 572 SMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQ 631

Query: 457 DLAICAAKKILNLDP-QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE 515
           DLA  AA ++  +D  +D   Y+ +SNIYA + KW+  A+V+K MR RG+ K    SW+E
Sbjct: 632 DLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVE 691

Query: 516 VNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYH 575
           ++ ++H F   D +HPQ ++I + +  L++ +   GY PDT+  LQ+++ E K +S++YH
Sbjct: 692 IDHRVHVFTANDRTHPQTEQIRRKINSLVELMDKEGYKPDTSCTLQNVDEEMKIESLKYH 751

Query: 576 SEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDG 635
           SE+LAI F L++  +G  I I KNLR C DCH   K+ +K+  + I +RD  R+HHF+DG
Sbjct: 752 SERLAIAFALINTPEGSPIIIMKNLRACVDCHAAIKVISKIVGREITVRDSSRFHHFRDG 811

Query: 636 NCSCGDYW 643
           +CSCGDYW
Sbjct: 812 SCSCGDYW 819



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/404 (28%), Positives = 208/404 (51%), Gaps = 8/404 (1%)

Query: 52  QRDLPRAMKAMHAMQCH-GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           Q + P+    ++   C  GV+ D +T+A L+        ++E   +H+H++  GF     
Sbjct: 120 QNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLI 179

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           + N L++ + K   L+ A  LF +MP ++ VS+  MI+ Y      ++AL+L + M    
Sbjct: 180 VFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMD 239

Query: 171 VRPNMFTYSAVLR---ACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
            +P+ FT++A+L      + +I  +Q+H   IK  +  D+FV +AL+D Y+K   +  A+
Sbjct: 240 FQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAK 299

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            +F+EMP  D V +N II G+A N   +++ +L+KR++   F        ++L       
Sbjct: 300 NLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIEL 359

Query: 288 LLELGTQVHVH--VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
            L +G Q H    V     ++ + NAL+DMY KC   EDA  +F+ +  ++ + W+ +IS
Sbjct: 360 NLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIIS 419

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
              Q G+ +EALK+F+ M    +  +  T    L A ++   V  G     S+ +  G+ 
Sbjct: 420 IYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRL-GLL 478

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
                 S ++D+    G +++A+++  EMP + + V W AL+ A
Sbjct: 479 SSVFSGSVLVDMYANCGSMKDAIEVFKEMP-DRNIVCWNALISA 521



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 86/258 (33%), Positives = 141/258 (54%), Gaps = 5/258 (1%)

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV 171
           VN++++ +VK   L  A+ LF+ M  RN VSWT MI  Y       +A  L   M R GV
Sbjct: 80  VNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGV 139

Query: 172 RPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
           +P+  T++ +L   D    L+   Q+H  II+ GF + + V ++L+D Y K   L  A  
Sbjct: 140 KPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQ 199

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           +F+EMPT+D V +N +I G+ +    +EAL L+ +M+   F     T  ++L    G   
Sbjct: 200 LFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSED 259

Query: 289 LELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           +  G Q+H   +K  Y  D+ + NALLD Y K   ++ A ++F  M + D +S++ +I+G
Sbjct: 260 VIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITG 319

Query: 347 LAQNGYSQEALKLFESMK 364
            A NG  +++  LF+ ++
Sbjct: 320 YAWNGQYEKSFDLFKRLQ 337



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 120/238 (50%), Gaps = 6/238 (2%)

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           ++  Y K   L  A  +F  M +R+ V W  +IGG++QN+   EA NLY  M R+G   D
Sbjct: 83  MVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPD 142

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
             T  ++L        L+   Q+H H+++  +   LI+ N+L+D YCK   L+ A  +FS
Sbjct: 143 HITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFS 202

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            M  KD +S++ MI+G  + G+ +EALKLF  M+    +P+  T   +L     +  V  
Sbjct: 203 EMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIF 262

Query: 391 GWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           G   H  ++K  Y  D    +   ++D   +   +  A  L  EMP E D V++  ++
Sbjct: 263 GQQIHGLAIKTSYVWDIFVAN--ALLDFYSKHDYIDLAKNLFDEMP-ELDGVSYNIII 317



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 2/166 (1%)

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
           N ++  Y K  +L  A  +F  M  ++ +SW+ MI G +QN   +EA  L+  M  S +K
Sbjct: 81  NMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVK 140

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           P++IT   +L        +++       + +F G       ++ ++D   +   L  A +
Sbjct: 141 PDHITFATLLSGFDDTTTLKEVLQIHSHIIRF-GFSASLIVFNSLVDSYCKTCCLDIASQ 199

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           L  EMP + D+V++  ++     +   + A+    ++ N+D Q  G
Sbjct: 200 LFSEMPTK-DSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSG 244


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/693 (35%), Positives = 380/693 (54%), Gaps = 82/693 (11%)

Query: 28  PVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHG-VRADSVTYAELIKCCLA 86
           P A  +T+  N+  ++  F R         A+   HA+   G +R D  ++  LI     
Sbjct: 121 PPARRDTVLHNA--MMSAFARASLAAP---AVSVFHALLGSGSLRPDDYSFTALISAVGQ 175

Query: 87  RH--AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLE---EAQVLFDQMPERNVV 141
            H  A      +H  VL  G      + N L+ +++K    E   +A+ + D+MP+++ +
Sbjct: 176 MHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDL 235

Query: 142 SWTTM-------------------------------ISAYCDAKMNDKALELLIFMLREG 170
           +WTTM                               IS Y  + M   A EL   M+ E 
Sbjct: 236 TWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEK 295

Query: 171 VRPNMFTYSAVLRACDS---LIILRQLHCGIIKV--GF--ESDVFVRSALIDIYAKLGEL 223
           V  + FT+++VL AC +    +  + +H  II++   F  E+ + V +AL+ +Y+K G++
Sbjct: 296 VPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKI 355

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK---------------RAG 268
             A+ +F+ M  +D+V WN+I+ G+  +  +D+A+ ++K M                  G
Sbjct: 356 VIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGG 415

Query: 269 FAADQSTLTSVLRA----------------CTGLALLELGTQVHVHVLK--YDHDLILNN 310
            + D   L + +RA                C  L  L+ G Q+H H+++  ++      N
Sbjct: 416 LSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGN 475

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           ALL MY KCG++ DA  VF  M   D +SW+ MIS L Q+G+ +EAL+LF+ M    I P
Sbjct: 476 ALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDP 535

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           + I+ + +L AC+HAG V++G+++F+SMK+ +GI PG +HY+ +IDLLGR+G++ EA  L
Sbjct: 536 DRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDL 595

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
           I  MP+EP    W A+L  C+ + + +    AA ++  + PQ  GTYILLSN Y+ + +W
Sbjct: 596 IKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRW 655

Query: 491 DEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGV 550
            + A VRK MR RG+ KEPGCSWIEV  +IH F V D+ HP+  ++ + L+ +  ++  +
Sbjct: 656 VDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKL 715

Query: 551 GYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFA 610
           GY PDT +VL D+E  +KE  +  HSEKLA+ FGL+ L  G T+ + KNLRICGDCHT  
Sbjct: 716 GYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAM 775

Query: 611 KLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
              +K   + IV+RD  R+HHF+DG CSCG+YW
Sbjct: 776 MFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 808


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/575 (39%), Positives = 339/575 (58%), Gaps = 11/575 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQ 134
           +  L+K C    ++EE K VH H+L  G   ++F  + L+      ++  +E A  +F Q
Sbjct: 34  WLSLLKRC---KSMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQ 90

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR-- 192
           + E     + TMI    ++   ++AL L + ML  G+ P+ FTY  VL+AC  L+ L+  
Sbjct: 91  IEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEG 150

Query: 193 -QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
            Q+H  +   G E DVFV++ LI +Y K G + +A  VF +M  + +  W+SIIG  A  
Sbjct: 151 VQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASV 210

Query: 252 SDVDEALNLYKRMKRAG-FAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--IL 308
               E L L   M R G   A++S L S L ACT L    LG  +H  +L+   +L  ++
Sbjct: 211 EMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVV 270

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
             +L+DMY KCGSLE  + VF  M  K+  S++ MI+GLA +G  +EAL++F  M    +
Sbjct: 271 KTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDMLEEGL 330

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
            P+ +  VGVL ACSHAG V++G+  F  M+  + I P  +HY CM+DL+GRAG L+EA 
Sbjct: 331 TPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAY 390

Query: 429 KLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
            LI  MP +P+ V WR+LL ACKVH N ++   AA  I  L+  +PG Y++L+N+YA +Q
Sbjct: 391 DLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAADNIFKLNKHNPGDYLVLANMYARAQ 450

Query: 489 KWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLV 548
           KW  VA +R  M  + + + PG S +E N+ ++ F   D S PQ + I   ++ +  +L 
Sbjct: 451 KWANVARIRTEMVEKNLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLK 510

Query: 549 GVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHT 608
             GY PD + VL D++ ++K   +++HS+KLAI F L+  ++G  +RI +NLR+C DCHT
Sbjct: 511 FEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPVRISRNLRMCNDCHT 570

Query: 609 FAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + K  + +  + I +RD  R+HHF+DG CSC DYW
Sbjct: 571 YTKFISVIYEREITVRDSNRFHHFKDGTCSCKDYW 605


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/611 (38%), Positives = 348/611 (56%), Gaps = 40/611 (6%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF-EPETFLVNILLNMHVKFS 123
           M  H ++ D  T+  L+K      A++  K++ NH +  GF +   F+    +++     
Sbjct: 126 MLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCG 185

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR--EGVRPNMFTYSAV 181
           L+  A+ +FD      VV+W  ++S Y   K  +++  L I M +  E V PN  T   +
Sbjct: 186 LVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLM 245

Query: 182 LRACDSLIILRQLHC---GIIKVGF-ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           L AC  L  L    C     IK G  E ++ + +ALID++A  GE+  A  VF+EM TRD
Sbjct: 246 LSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRD 305

Query: 238 LVVWNSIIGGFAQNSDVD-------------------------------EALNLYKRMKR 266
           ++ W SI+ GFA    +D                               E L L++ M+ 
Sbjct: 306 VISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQM 365

Query: 267 AGFAADQSTLTSVLRACTGLALLELG--TQVHVHVLKYDHDLILNNALLDMYCKCGSLED 324
           +    D+ T+ S+L AC  L  LELG   + ++   K  +D  + NAL+DMY KCG++E 
Sbjct: 366 SNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEK 425

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           A  +F+ M +KD  +W+ MI GLA NG+ +EAL +F  M  + + P+ IT +GV+ AC+H
Sbjct: 426 AKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTH 485

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
            G V  G + F +M   +GI P   HY CM+DLLGRAG L+EA+++I  MP +P+++ W 
Sbjct: 486 VGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWG 545

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
           +LLGAC+VH+N  LA  AA +IL L+P++   Y+LL NIYA  +KW  +  VRK M  RG
Sbjct: 546 SLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERG 605

Query: 505 ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLE 564
           I K PGCS +E+N  ++ F   D SHPQ  +I   L+++ Q L   GY+PDT+ V  D+ 
Sbjct: 606 IKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVG 665

Query: 565 GEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIR 624
            E KE ++  HSEKLAI + L+S  +G TIRI KNLR+C DCH  A + +K+ N+ +++R
Sbjct: 666 EEDKETALYMHSEKLAIAYALISSGKGVTIRIVKNLRMCVDCHHMAMVVSKVYNRELIVR 725

Query: 625 DPIRYHHFQDG 635
           D  R+HHF+ G
Sbjct: 726 DKTRFHHFRHG 736



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 181/368 (49%), Gaps = 58/368 (15%)

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A+ +FD++P+ +V  W TMI  Y     ++  + L   ML   ++P+ FT+  +L+    
Sbjct: 88  ARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTK 147

Query: 188 LIILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
            + L+     L+  +I    +S++FV+   I +++  G +  A  +F+     ++V WN 
Sbjct: 148 DMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNV 207

Query: 244 IIGGFAQNSDVDEALNLYKRMKRA--GFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           ++ G+ +    +E+  L+  M++     + +  TL  +L AC+ L  L  G  ++   +K
Sbjct: 208 VLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIK 267

Query: 302 ---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ--------- 349
               + +LIL NAL+DM+  CG ++ A  VF  M  +DVISW+++++G A          
Sbjct: 268 EGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARK 327

Query: 350 -----------------NGY-----SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
                            +GY      +E L LF  M++S +KP+  T+V +L AC+H G 
Sbjct: 328 YFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGA 387

Query: 388 VEDG-W-------NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD 439
           +E G W       N  K+   F G        + +ID+  + G +++A K+ +EM  + D
Sbjct: 388 LELGEWAKTYIDKNKIKN-DTFIG--------NALIDMYFKCGNVEKAKKIFNEMQ-KKD 437

Query: 440 AVTWRALL 447
             TW A++
Sbjct: 438 KFTWTAMI 445



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 155/345 (44%), Gaps = 42/345 (12%)

Query: 42  LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHN-HV 100
           +L  + RF    +  R    M   +C  V  +SVT   ++  C     +   K ++N ++
Sbjct: 208 VLSGYNRFKRYEESKRLFIEMEK-KCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYI 266

Query: 101 LSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA------- 153
             G  EP   L N L++M      ++ A+ +FD+M  R+V+SWT++++ + +        
Sbjct: 267 KEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLAR 326

Query: 154 ----------------------KMN--DKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
                                 +MN   + L L   M    V+P+ FT  ++L AC  L 
Sbjct: 327 KYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLG 386

Query: 190 ILRQLHCG---IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            L         I K   ++D F+ +ALID+Y K G +  A+ +FNEM  +D   W ++I 
Sbjct: 387 ALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIV 446

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL 306
           G A N   +EAL ++  M  A    D+ T   V+ ACT + L+  G     + +   H +
Sbjct: 447 GLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSN-MAVQHGI 505

Query: 307 ILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
             N      ++D+  + G L++A+ V   M ++ + I W +++  
Sbjct: 506 KPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGA 550



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 157/334 (47%), Gaps = 13/334 (3%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESD-VFVRSALIDIYAK-LGELRNAECVFNEMPTRD 237
           ++L  C+++  + Q+H   IK G  S+ +F+   +I    K  G++  A  VF+E+P   
Sbjct: 40  SLLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPS 99

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           + +WN++I G+++ +  +  ++LYK M       D  T   +L+  T    L+ G  +  
Sbjct: 100 VFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLN 159

Query: 298 HVLKY---DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
           H + +   D +L +    + ++  CG +  A  +F      +V++W+ ++SG  +    +
Sbjct: 160 HAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYE 219

Query: 355 EALKLFESM--KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
           E+ +LF  M  K   + PN +T+V +L ACS    +  G   +    K   ++P     +
Sbjct: 220 ESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILEN 279

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
            +ID+    G++  A  +  EM    D ++W +++         DL    A+K  +  P+
Sbjct: 280 ALIDMFASCGEMDAARGVFDEMKTR-DVISWTSIVTGFANTCRIDL----ARKYFDQMPE 334

Query: 473 -DPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
            D  ++  + + Y    ++ EV  + + M+   +
Sbjct: 335 RDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNV 368


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/562 (39%), Positives = 341/562 (60%), Gaps = 11/562 (1%)

Query: 90  VEEAKLVHNHVL--SGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMI 147
           +EE K VH  VL     F     +    L+    +  ++ A  +F Q+ +     + TMI
Sbjct: 1   MEEFKQVHAQVLKWENSFCASNLVATCALS---DWGSMDYACSIFRQIDQPGTFEFNTMI 57

Query: 148 SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFE 204
             Y +    + AL L   ML  GV  + FTY A+ +AC SL  +    Q+H  I K G E
Sbjct: 58  RGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLE 117

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
            D+FV+++LI++Y K G++  +  VF  M  RD+  W++II   A      E L+++  M
Sbjct: 118 GDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEM 177

Query: 265 KRAGFA-ADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGS 321
            R G    ++S L SVL ACT L  L+LG   HV +L+   + ++I+  +L+DMY KCG 
Sbjct: 178 SREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGC 237

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
           +E  +S+F RM++K+ +S+S MI+GLA +G   EAL++F  M    +KP+ +  +GVL A
Sbjct: 238 IEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSA 297

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
           C+HAG V++G   F  MK  +GI+P  +HY C++ L+GRAG L +A++ I  MP +P+ V
Sbjct: 298 CNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEV 357

Query: 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
            WR LL ACK H N ++   AAK +  L+  +PG Y++LSN+YA +++W++VA++R  M 
Sbjct: 358 VWRGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMA 417

Query: 502 ARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQ 561
            +G T+ PG S ++V ++I+ F   D SHPQ   + + +  +  +L   GY+PDT+ VL 
Sbjct: 418 RKGFTQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLF 477

Query: 562 DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTI 621
           D++ E+K   ++ HS+KLA+ F L+  +QG  IRI +NLR+C DCHT+ KL + +  + I
Sbjct: 478 DVDEEEKRQRLKAHSQKLAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREI 537

Query: 622 VIRDPIRYHHFQDGNCSCGDYW 643
            +RD  R+HHF+DG CSC DYW
Sbjct: 538 TVRDRNRFHHFKDGTCSCRDYW 559



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 175/385 (45%), Gaps = 37/385 (9%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           ++  A+   + M   GV +D+ TY  L K C +  ++EE   +H ++   G E + F+ N
Sbjct: 65  NMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQN 124

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VR 172
            L+NM+ K   +E +  +F+ M  R+V SW+ +I+A+    M  + L +   M REG  R
Sbjct: 125 SLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCR 184

Query: 173 PNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P      +VL AC  L  L   R  H  +++   E +V V+++LID+Y K G +     +
Sbjct: 185 PEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSL 244

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F  M  ++ + ++ +I G A +    EAL ++  M   G   D      VL AC    L+
Sbjct: 245 FQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLV 304

Query: 290 ELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           + G Q   + +K +H                            I+  +  +  ++  + +
Sbjct: 305 DEGLQC-FNRMKLEHG---------------------------IEPTIQHYGCIVHLMGR 336

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
            G   +AL+   SM    IKPN +   G+L AC     +E G    KS+ +    +PG  
Sbjct: 337 AGMLNKALEHIRSMP---IKPNEVVWRGLLSACKFHHNLEIGEIAAKSLGELNSSNPG-- 391

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEM 434
            Y  + ++  RA + ++  K+  EM
Sbjct: 392 DYVVLSNMYARAKRWEDVAKIRTEM 416


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/653 (33%), Positives = 363/653 (55%), Gaps = 64/653 (9%)

Query: 55   LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
            L + ++    MQ   ++A++ T   +++ C    A+  AK +H +V   G + +  L N 
Sbjct: 756  LQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNP 815

Query: 115  LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC------------------DAKMN 156
            L++M+ K   LE A+ +FD M  RN  SW +MIS+Y                   D K +
Sbjct: 816  LISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPD 875

Query: 157  -----------------DKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHC 196
                             ++ L +L  M  EG +PN  + ++VL+A   L  L   ++ H 
Sbjct: 876  IVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHG 935

Query: 197  GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
             +++ GF+ DV+V ++LID+Y K   L +A+ VF+ M  R++  WNS++ G++     ++
Sbjct: 936  YVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFED 995

Query: 257  ALNLYKRMKRAG------------------------FAADQSTLTSVLRACTGLALLELG 292
            AL L  +M++ G                        F  + +++T +LRAC  L+LL+ G
Sbjct: 996  ALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKG 1055

Query: 293  TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
             ++H   ++  +  D+ +  AL+DMY K  SL++A  VF R+  K + SW+ MI G A  
Sbjct: 1056 KEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIF 1115

Query: 351  GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
            G  +EA+ +F  M+   + P+ IT   +L AC ++G + +GW +F SM   Y I P  EH
Sbjct: 1116 GLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEH 1175

Query: 411  YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
            Y CM+DLLGRAG L EA  LIH MP +PDA  W ALLG+C++H+N   A  AAK +  L+
Sbjct: 1176 YCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLE 1235

Query: 471  PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSH 530
            P +   YIL+ N+Y+   +W+++  +R+ M A G+      SWI++N+++H F+  +  H
Sbjct: 1236 PNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPH 1295

Query: 531  PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
            P   KI   L  L+ ++  +GY PD N V Q+++  +K+  +  H+EKLAI +GL+ +  
Sbjct: 1296 PDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKA 1355

Query: 591  GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            G+ IR+ KN RIC DCH+ AK  + ++ + + +RD +R+HHF++G CSC D+W
Sbjct: 1356 GEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 221/490 (45%), Gaps = 97/490 (19%)

Query: 59   MKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118
            ++    +   GV  DS  Y+  +K C     +     +H  ++  GF+ + +L   L+N 
Sbjct: 659  LEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNF 718

Query: 119  HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTY 178
            + +   LE+A  +F +MP    + W   I     ++   K +EL   M    ++    T 
Sbjct: 719  YGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATI 778

Query: 179  SAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235
              VL+AC  +  L   +Q+H  + + G +SDV + + LI +Y+K G+L  A  VF+ M  
Sbjct: 779  VRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMEN 838

Query: 236  RDLVVWNSIIGGFA---------------QNSDV--------------------DEALNL 260
            R+   WNS+I  +A               ++SD+                    +E LN+
Sbjct: 839  RNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNI 898

Query: 261  YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCK 318
             +RM+  GF  + S++TSVL+A + L  L +G + H +VL+  +D D+ +  +L+DMY K
Sbjct: 899  LQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVK 958

Query: 319  CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT---- 374
              SL  A +VF  M  +++ +W++++SG +  G  ++AL+L   M+   IKP+ +T    
Sbjct: 959  NHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGM 1018

Query: 375  --------------------IVGVLFACS----------------HAGFVE--------- 389
                                I  +L AC+                  GF+E         
Sbjct: 1019 ISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALI 1078

Query: 390  DGWNHFKSMKKFYGI-----DPGREHYSCMIDLLGRAGKLQEAVKLIHEMP---YEPDAV 441
            D ++   S+K  + +     +     ++CMI      G  +EA+ + +EM      PDA+
Sbjct: 1079 DMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAI 1138

Query: 442  TWRALLGACK 451
            T+ ALL ACK
Sbjct: 1139 TFTALLSACK 1148



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 163/320 (50%), Gaps = 13/320 (4%)

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE----G 170
           L++ ++ F     A ++F     RN + W + +  +   K +  +L +++ + +E    G
Sbjct: 613 LISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEF---KSSAGSLHIVLEVFKELHGKG 669

Query: 171 VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
           V  +   YS  L+ C  ++ +    ++H  +IK GF+ DV++R AL++ Y +   L  A 
Sbjct: 670 VVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKAN 729

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            VF+EMP  + ++WN  I    Q+  + + + L+++M+ +   A+ +T+  VL+AC  + 
Sbjct: 730 QVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMG 789

Query: 288 LLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
            L    Q+H +V ++  D D+ L N L+ MY K G LE A  VF  M  ++  SW++MIS
Sbjct: 790 ALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMIS 849

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
             A  G+  +A  LF  ++ S +KP+ +T   +L      G+ E+  N  + M+   G  
Sbjct: 850 SYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQG-EGFK 908

Query: 406 PGREHYSCMIDLLGRAGKLQ 425
           P     + ++  +   G L 
Sbjct: 909 PNSSSMTSVLQAISELGFLN 928


>gi|297795827|ref|XP_002865798.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311633|gb|EFH42057.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 701

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/577 (36%), Positives = 351/577 (60%), Gaps = 9/577 (1%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           TY  L++ C+   ++   K V+  ++S GFEPE +++N +L MHVK  ++ +A+ LFD+M
Sbjct: 125 TYDALVEACIRLKSIRCVKRVYGFIISNGFEPEKYMMNRILLMHVKCGMIIDARRLFDEM 184

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILR 192
           PERN+ S+ ++IS + +    ++A EL   M  E       T++ +LRA     S+ + +
Sbjct: 185 PERNLFSYNSIISGFVNFGNYEEAFELFKLMWEELSDCETHTFAVMLRASAGLWSVYVGK 244

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           QLH   +K+G   + FV   LID+Y+K G++ +A C F  MP +  V WN+I+ G+A + 
Sbjct: 245 QLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFESMPEKTTVAWNNIVAGYALHG 304

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNN 310
             +EAL L   M+ +G + DQ TL+ ++R  T LA LEL  Q H  +++  ++ +++ N 
Sbjct: 305 YSEEALCLLYEMRDSGVSMDQFTLSIMIRISTRLAKLELTKQAHASLIRSGFESEIVANT 364

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           AL+D Y K G ++ A  VF ++ +K++ISW+ ++ G A +G   +A++LFE M  +++ P
Sbjct: 365 ALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVRLFERMIAAKVAP 424

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           N++T + VL AC+++G  E GW  F SM + +GI P   HY+CMI+LLGR G L EA+  
Sbjct: 425 NHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAIAF 484

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
           I   P +     W ALL AC++  N +L    A+K+  + P+  G Y++L N+Y +  K 
Sbjct: 485 IRRAPLKTTVNMWAALLNACRMQGNLELGRVVAEKLYGMGPEKLGNYVVLYNMYNSMGKT 544

Query: 491 DEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF---NVADSSHPQIDK-INKHLKHLIQK 546
            E A V +T+ ++G++  P C+W+EV  Q H+F   +  DS +  + + + + +  L+++
Sbjct: 545 AEAAGVLETLESKGLSMIPACTWVEVGDQTHSFLSGDRFDSYNETVKREVYQKVDELMEE 604

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           +   GY  +   +L D++ +++E   +YHSEKLAI +GLM+  +   ++I +N RIC DC
Sbjct: 605 IYEYGYLAEEKNLLPDVDEKEEERVGRYHSEKLAIAYGLMNTPEWNPLQITQNHRICKDC 664

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           H   +  + +  + +V+RD  R+HHF++G CSCG YW
Sbjct: 665 HKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 124/281 (44%), Gaps = 31/281 (11%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+  ++ M+  GV  D  T + +I+       +E  K  H  ++  GFE E      L++
Sbjct: 309 ALCLLYEMRDSGVSMDQFTLSIMIRISTRLAKLELTKQAHASLIRSGFESEIVANTALVD 368

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            + K+  ++ A+ +FD++P +N++SW  ++  Y +      A+ L   M+   V PN  T
Sbjct: 369 FYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVRLFERMIAAKVAPNHVT 428

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           + AVL AC         + G+ + G+E  +F+  ++ +++       +  C+  E+  RD
Sbjct: 429 FLAVLSAC--------AYSGLSEQGWE--IFL--SMSEVHGIKPRAMHYACMI-ELLGRD 475

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
            +              +DEA+     ++RA      +   ++L AC     LELG  V  
Sbjct: 476 GL--------------LDEAIAF---IRRAPLKTTVNMWAALLNACRMQGNLELGRVVAE 518

Query: 298 HVLKYDHDLILNNALL-DMYCKCGSLEDAMSVFSRMIQKDV 337
            +     + + N  +L +MY   G   +A  V   +  K +
Sbjct: 519 KLYGMGPEKLGNYVVLYNMYNSMGKTAEAAGVLETLESKGL 559


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 245/661 (37%), Positives = 353/661 (53%), Gaps = 47/661 (7%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAEL 80
           F+    P +   NT+ R  +S  D    F         +  +H +       +  T+  L
Sbjct: 129 FNQIPQPNLYCWNTLIRGYASSSDPTQSF---------LIFLHMLHSCSEFPNKFTFPFL 179

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
            K       +    ++H  V+      + F++N L+N +      + A  +F  MP ++V
Sbjct: 180 FKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDV 239

Query: 141 VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCG 197
           VSW  MI+A+    + DKAL L   M  + V+PN+ T  +VL AC   I L   R +   
Sbjct: 240 VSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSY 299

Query: 198 IIKVGFESDVFVRSALIDIY-------------------------------AKLGELRNA 226
           I   GF   + + +A++D+Y                               AKLG    A
Sbjct: 300 IENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEA 359

Query: 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLRACTG 285
            C+F+ MP +    WN++I  + QN     AL+L+  M+ +  A  D+ TL   L A   
Sbjct: 360 HCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQ 419

Query: 286 LALLELGTQVHVHVLKYDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L  ++ G  +HV++ K+D +L   L  +LLDMY KCG+L  AM VF  + +KDV  WS M
Sbjct: 420 LGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAM 479

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           I  LA  G  + AL LF SM  + IKPN +T   +L AC+HAG V +G   F+ M+  YG
Sbjct: 480 IGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYG 539

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           I P  +HY C++D+ GRAG L++A   I +MP  P A  W ALLGAC  H N +LA  A 
Sbjct: 540 IVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAY 599

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
           + +L L+P + G ++LLSNIYA +  W++V+ +RK MR   + KEP CS I+VN  +H F
Sbjct: 600 QNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEF 659

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQ-KEDSIQYHSEKLAIV 582
            V D+SHP   KI   L  + +K   +GY PD + +LQ  E +   E S+  HSEKLAI 
Sbjct: 660 LVGDNSHPFSQKIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHSEKLAIA 719

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           FGL+S    + IRI KN+RICGDCH FAKL +++ ++ I++RD  R+HHF+ G CSC DY
Sbjct: 720 FGLISTASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDY 779

Query: 643 W 643
           W
Sbjct: 780 W 780



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 135/489 (27%), Positives = 227/489 (46%), Gaps = 55/489 (11%)

Query: 20  QFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQC-------HGVRA 72
           Q SL+ +       + +  S+S L   +  C     P ++  + AM C        G   
Sbjct: 12  QPSLSFSLDFGGRFSCSSTSNSTLLRVSVKCSALSTPLSLGQI-AMNCTEAVKGEKGNEV 70

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQV 130
           +S    E I  C       + K +H H+L      + +  + LL  +     S L  A+ 
Sbjct: 71  ESTNILEFIDQCTN---TMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKN 127

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR-PNMFTYSAVLRACDSLI 189
           +F+Q+P+ N+  W T+I  Y  +    ++  + + ML      PN FT+  + +A   L 
Sbjct: 128 VFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLK 187

Query: 190 ILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
           +L     LH  +IK    SD+F+ ++LI+ Y   G    A  VF  MP +D+V WN++I 
Sbjct: 188 VLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMIN 247

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV--HVHVLKYDH 304
            FA     D+AL L++ M+      +  T+ SVL AC     LE G  +  ++    +  
Sbjct: 248 AFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTE 307

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA---------------- 348
            LILNNA+LDMY KCG + DA  +F++M +KD++SW+TM+ G A                
Sbjct: 308 HLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMP 367

Query: 349 ---------------QNGYSQEALKLFESMKVSR-IKPNYITIVGVLFACSHAGFVEDG- 391
                          QNG  + AL LF  M++S+  KP+ +T++  L A +  G ++ G 
Sbjct: 368 HKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGH 427

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
           W H    K  + I+      + ++D+  + G L +A+++ H +  + D   W A++GA  
Sbjct: 428 WIHVYIKK--HDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERK-DVYVWSAMIGALA 484

Query: 452 VHRNTDLAI 460
           ++     A+
Sbjct: 485 MYGQGKAAL 493



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 149/285 (52%), Gaps = 13/285 (4%)

Query: 185 CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRDLVVWN 242
           C + + L+Q+H  +++     D +  S L+  YA      L  A+ VFN++P  +L  WN
Sbjct: 82  CTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWN 141

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRA-GFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           ++I G+A +SD  ++  ++  M  +     ++ T   + +A + L +L LG+ +H  V+K
Sbjct: 142 TLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIK 201

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
                DL + N+L++ Y   G+ + A  VF+ M  KDV+SW+ MI+  A  G   +AL L
Sbjct: 202 ASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLL 261

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY---SCMID 416
           F+ M++  +KPN IT+V VL AC+    +E G    + +  +   +   EH    + M+D
Sbjct: 262 FQEMEMKDVKPNVITMVSVLSACAKKIDLEFG----RWICSYIENNGFTEHLILNNAMLD 317

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
           +  + G + +A  L ++M  E D V+W  +L       N D A C
Sbjct: 318 MYVKCGCINDAKDLFNKMS-EKDIVSWTTMLDGHAKLGNYDEAHC 361


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/567 (40%), Positives = 338/567 (59%), Gaps = 20/567 (3%)

Query: 96  VHNHVLSGGFEPETFLVNILLNM-----HVKFSLLEEAQVLFDQMPERNVVSW-TTMISA 149
           +H   +  G +     V  LL +       K + L  A+ +FD++P    V W  T++  
Sbjct: 50  LHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGPGDVVWYNTLLRG 109

Query: 150 Y--CDAKMN-----DKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGII 199
           Y  C A        ++A  + + ML EGV P+ +T+ ++L+AC +       RQ H   +
Sbjct: 110 YARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAV 169

Query: 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN 259
           KVG     +V   LI++YA+ G+ R A  +F  +    +V +N++I    ++S   EAL 
Sbjct: 170 KVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALV 229

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLIL--NNALLDMYC 317
           L++ M+  G      TL SVL AC  L  LELG  +H +V K   D ++  N AL+DMY 
Sbjct: 230 LFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYG 289

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           KCGSLEDA+SVF  M  +D  +WS MI   A + Y +EA+ LFE MK   IKP+ +T +G
Sbjct: 290 KCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLG 349

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           VL+ACSH+G V +G  +F SM++F G+ PG +HY C+ DLL R+G+L  A + I E+P +
Sbjct: 350 VLYACSHSGLVSEGLQYFDSMREF-GLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIK 408

Query: 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497
           P A+ WR LL AC    + DL     ++IL LD    G Y++ SN+ AN+ +W+E+  VR
Sbjct: 409 PTAILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFSNLCANTGRWEEMNRVR 468

Query: 498 KTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTN 557
           K M  +G+ K PGCS IEV+ ++H F   D  HP+     + +  +I++L   GY P+T+
Sbjct: 469 KLMNEKGVVKVPGCSSIEVDNRVHEFFAGDGRHPKSLDARRMVDGVIEQLKLAGYVPNTS 528

Query: 558 YVLQ-DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKM 616
           +V   ++  E+K  S++YHSEKLAI FGL++ + G T+R+ KNLR+C DCH+ AKL + +
Sbjct: 529 HVFHVEMGEEEKAVSLRYHSEKLAISFGLLNTSPGTTLRVVKNLRVCPDCHSMAKLVSMV 588

Query: 617 ENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            N+ I++RD  R+HHF+DG CSCGDYW
Sbjct: 589 FNRRIILRDLNRFHHFEDGVCSCGDYW 615



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 99/219 (45%), Gaps = 20/219 (9%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     MQ  G++  SVT   ++  C    A+E  + +H +V     +    +   L++
Sbjct: 227 ALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTALID 286

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   LE+A  +F  M  R+  +W+ MI AY +     +A+ L   M ++G++P+  T
Sbjct: 287 MYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVT 346

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVR-----------SALIDIYAKLGELRNA 226
           +  VL AC         H G++  G +    +R             + D+ A+ G+L  A
Sbjct: 347 FLGVLYACS--------HSGLVSEGLQYFDSMREFGLVPGIKHYGCVADLLARSGQLDRA 398

Query: 227 ECVFNEMPTRDL-VVWNSIIGGFAQNSDVDEALNLYKRM 264
               +E+P +   ++W +++       D D    +++R+
Sbjct: 399 YEFIDELPIKPTAILWRTLLSACGSRGDADLGKQVFERI 437


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/618 (35%), Positives = 354/618 (57%), Gaps = 25/618 (4%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARH--AVEEAKLVH 97
           +SL+  + R   + ++ R    M      G+  +S     +IKCC  R    ++ A+ VH
Sbjct: 179 NSLVSGYVRAGAREEMVRVFAMMRR---GGMGLNSFALGSVIKCCSGRGDGTMDIAEAVH 235

Query: 98  NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK--- 154
             V+  G + + FLV+ +++M+ K   L EA  LF  + E NVV + TMI+ +C  +   
Sbjct: 236 GCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVI 295

Query: 155 ---MNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVF 208
              +  +AL L   +   G++P  FT+S+VLRAC+    L   +Q+H  +IK  F+ D F
Sbjct: 296 GKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDF 355

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           + SALID+Y   G + +    F   P  D+V W +++ G  QN   ++AL+L+     AG
Sbjct: 356 IGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAG 415

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAM 326
              D  T++SV+ AC  LA+   G Q+     K  +D   ++ N+ + MY + G ++ A 
Sbjct: 416 LKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAAT 475

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
             F  M   DV+SWS +IS  AQ+G +++AL  F+ M  +++ PN IT +GVL ACSH G
Sbjct: 476 RRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGG 535

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            V++G  ++++M K YG+ P  +H +C++DLLGRAG+L +A   I    +  D V WR+L
Sbjct: 536 LVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNGIFHADPVIWRSL 595

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           L +C++HR+ +     A +I+ L+P    +Y++L N+Y ++ +    ++ R  M+ RG+ 
Sbjct: 596 LASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQRGVK 655

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           KEPG SWIE+   +H+F   D SHP+   I   L+ ++ ++              D E  
Sbjct: 656 KEPGLSWIELKCGVHSFVAGDKSHPESSAIYTKLEEMLSRI--------EKLATTDTEIS 707

Query: 567 QKEDSI-QYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           ++E ++   HSEKLA+  G++ L Q   IR+ KNLR+C DCH+  KL +K EN+ I++RD
Sbjct: 708 KREQNLMNCHSEKLAVALGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISKSENREIILRD 767

Query: 626 PIRYHHFQDGNCSCGDYW 643
           PIR+HHF+DG+CSC DYW
Sbjct: 768 PIRFHHFRDGSCSCADYW 785



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 214/431 (49%), Gaps = 29/431 (6%)

Query: 37  RNSSS---LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEA 93
           RN+ S   L+D ++R   +   P +++ +   +  GV  D  +YA  +  C     +   
Sbjct: 72  RNAVSFNLLIDAYSR---EGLAPLSLETLARARRAGVDVDRFSYAAALAACSRAGHLRAG 128

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
           + VH   +  G     F+ N L++M+ K   + EA+ +FD   ER+ VSW +++S Y  A
Sbjct: 129 RAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRA 188

Query: 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACD-----SLIILRQLHCGIIKVGFESDVF 208
              ++ + +   M R G+  N F   +V++ C      ++ I   +H  +IK G +SDVF
Sbjct: 189 GAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVF 248

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV------DEALNLYK 262
           + SA+ID+YAK G L  A  +F  +   ++V++N++I GF +   V       EAL LY 
Sbjct: 249 LVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYS 308

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCG 320
            ++  G    + T +SVLRAC     LE G Q+H  V+KY    D  + +AL+D+Y   G
Sbjct: 309 EVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSG 368

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
            +ED    F    + D+++W+ M+SG  QN   ++AL LF     + +KP+  TI  V+ 
Sbjct: 369 CMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMN 428

Query: 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM----IDLLGRAGKLQEAVKLIHEMPY 436
           AC+       G        + +    G + ++ M    + +  R+G +  A +   EM  
Sbjct: 429 ACASLAVARAG-----EQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMES 483

Query: 437 EPDAVTWRALL 447
             D V+W A++
Sbjct: 484 H-DVVSWSAVI 493



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 184/355 (51%), Gaps = 17/355 (4%)

Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
           FL N LL  + +      A+ L D+MP RN VS+  +I AY    +   +LE L    R 
Sbjct: 44  FLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRA 103

Query: 170 GVRPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           GV  + F+Y+A L AC     L   R +H   I  G  S VFV ++L+ +Y+K GE+  A
Sbjct: 104 GVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEA 163

Query: 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
             VF+    RD V WNS++ G+ +    +E + ++  M+R G   +   L SV++ C+G 
Sbjct: 164 RRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGR 223

Query: 287 --ALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
               +++   VH  V+K   D D+ L +A++DMY K G+L +A ++F  + + +V+ ++T
Sbjct: 224 GDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNT 283

Query: 343 MISGLAQN------GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HF 395
           MI+G  +         + EAL L+  ++   ++P   T   VL AC+ AG++E G   H 
Sbjct: 284 MIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHG 343

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           + +K  Y         S +IDL   +G +++  +     P + D VTW A++  C
Sbjct: 344 QVIK--YTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSP-KHDIVTWTAMVSGC 395


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/546 (40%), Positives = 327/546 (59%), Gaps = 38/546 (6%)

Query: 134 QMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL-- 191
           Q PE  V  W + + A  +      A+ L   + +  V P+ FT S+VLRAC +L+ L  
Sbjct: 89  QKPETFV--WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSN 146

Query: 192 -RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN-------- 242
            R LH  + KVGF S++++++ ++ +YA  GE+  A  +F +MP RD+V WN        
Sbjct: 147 GRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIK 206

Query: 243 -----------------------SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
                                  S+I G+ Q     EA++L+ +M+ AG   ++ T+ +V
Sbjct: 207 QGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAV 266

Query: 280 LRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
           L AC  L  L+LG ++H +  +  +  ++ ++N L+DMY KCG LE+A  VF  M ++ V
Sbjct: 267 LAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTV 326

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           +SWS MI GLA +G ++EAL+LF  M    I+PN +T +G+L ACSH G + +G   F S
Sbjct: 327 VSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFAS 386

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457
           M + YGI P  EHY CM+DLL RAG L EA + I  MP +P+ V W ALLGAC+VH+N +
Sbjct: 387 MTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVE 446

Query: 458 LAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVN 517
           +A  A K +L LDP + G Y++LSNIYA + +W++ A VRK M+ R + K PG S I V+
Sbjct: 447 MAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVD 506

Query: 518 KQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSE 577
             +H F   + SHP  ++I +  + L++++   GY P+T+ VL D+E  +K   +  HSE
Sbjct: 507 GVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSE 566

Query: 578 KLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNC 637
           KLA+VFGLM+      IRI KNLRIC DCH+  KL + + N+ IV+RD  R+H F D +C
Sbjct: 567 KLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSC 626

Query: 638 SCGDYW 643
           SC DYW
Sbjct: 627 SCRDYW 632



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 178/384 (46%), Gaps = 47/384 (12%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+   + ++ + V  D+ T + +++ CL    +   +++H  V   GF    +L N++++
Sbjct: 112 AIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVH 171

Query: 118 MHVKFSLLEEAQVLFDQMPERNVV-------------------------------SWTTM 146
           ++     + EA++LF++MP+R+VV                               SWT+M
Sbjct: 172 LYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSM 231

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGF 203
           I+ Y       +A+ L   M   GV+ N  T  AVL AC  L  L    ++H    + GF
Sbjct: 232 IAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGF 291

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
           + +V + + LID+Y K G L  A  VF EM  R +V W+++IGG A +   +EAL L+  
Sbjct: 292 KRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSD 351

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKC 319
           M + G   +  T   +L AC+ + L+  G +    + + D+ +I        ++D+  + 
Sbjct: 352 MSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTR-DYGIIPQIEHYGCMVDLLSRA 410

Query: 320 GSLEDAMSVFSRM-IQKDVISWSTMISGLAQNG---YSQEALKLFESMKVSRIKPNYITI 375
           G L +A      M ++ + + W  ++     +     ++EA+K    +++  +   Y  +
Sbjct: 411 GLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHL--LELDPLNDGYYVV 468

Query: 376 VGVLFACSHAGFVEDGWNHFKSMK 399
           +  ++A   AG  ED     K MK
Sbjct: 469 LSNIYA--EAGRWEDTARVRKFMK 490



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 106/216 (49%), Gaps = 8/216 (3%)

Query: 57  RAMKAMH---AMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           +A +A+H    M+  GV+ + VT   ++  C    A++    +H +    GF+    + N
Sbjct: 240 KAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISN 299

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L++M+VK   LEEA  +F++M ER VVSW+ MI         ++AL L   M + G+ P
Sbjct: 300 TLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEP 359

Query: 174 NMFTYSAVLRACDSLIIL---RQLHCGIIK-VGFESDVFVRSALIDIYAKLGELRNAECV 229
           N  T+  +L AC  + ++   R+    + +  G    +     ++D+ ++ G L  A   
Sbjct: 360 NGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEF 419

Query: 230 FNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRM 264
              MP + + VVW +++G    + +V+ A    K +
Sbjct: 420 ILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHL 455


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/615 (38%), Positives = 352/615 (57%), Gaps = 55/615 (8%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           T+ +L+K    R ++ + K +H  V++ G    T L+  L++ ++    L  A+++FDQ 
Sbjct: 57  TFVQLLK---KRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQF 113

Query: 136 PE-RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP---NMFTYSAVLRACDSLIIL 191
           P     + W  MI AY     + ++L L   ML  G RP   + +T++ V  AC     L
Sbjct: 114 PSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHG-RPTSADKYTFTFVFTACSRHPTL 172

Query: 192 R----QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           R     +H  ++K G+ESD+FV ++L+++Y+    + +A+ VF+EMP RD++ W S++ G
Sbjct: 173 RGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKG 232

Query: 248 FAQNSDVDEALNLYKRMKR----------AGFAA----------------------DQST 275
           +A   ++  A  L+  M            AG+                        +++ 
Sbjct: 233 YAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAV 292

Query: 276 LTSVLRACTGLALLELGTQVHVHVLKYDHDLIL-----NNALLDMYCKCGSLEDAMSVFS 330
           L S+L AC  L  L+ G  +HV++   D + IL     + AL+DMY KCG ++ A  VF 
Sbjct: 293 LVSILSACAHLGALDQGKWIHVYI---DKNRILLSSNISTALIDMYAKCGRIDCARRVFD 349

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            + ++D+++W++MISGL+ +G   E L  F  M     KP+ IT++GVL  CSH+G VE+
Sbjct: 350 GLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEE 409

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G + F  M   +GI P  EHY C+IDLLGRAG+L+ A + I  MP EPD V WRALL AC
Sbjct: 410 GLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSAC 469

Query: 451 KVHRNTDLAICAAKKILNLDP-QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEP 509
           ++H + DL       I  L P    G Y+LLSN+YA+  +W+ V +VRK M  RG    P
Sbjct: 470 RIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCP 529

Query: 510 GCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL-VGVGYAPDTNYVLQDLEGEQK 568
           GCSWIE++  +H F  AD  HP+I +INK L  +++++ +  GY P T  VL DL  E K
Sbjct: 530 GCSWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEEDK 589

Query: 569 EDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIR 628
           E ++ +HSEKLA+ FGL+S TQ  TIRI KNLR C DCH+  K  + + N+ IV+RD  R
Sbjct: 590 EQAVSWHSEKLAVAFGLLS-TQEGTIRITKNLRTCEDCHSAMKTISLVFNREIVVRDRSR 648

Query: 629 YHHFQDGNCSCGDYW 643
           +H F+ GNCSC DYW
Sbjct: 649 FHTFRYGNCSCTDYW 663



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 148/325 (45%), Gaps = 52/325 (16%)

Query: 173 PNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           P+  T+  +L+   SL  ++Q+H  ++  G   +  +   LI  Y     L  A  VF++
Sbjct: 53  PSHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQ 112

Query: 233 MPT-RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG--FAADQSTLTSVLRACTGLALL 289
            P+    ++WN +I  +++     E+L L+ +M   G   +AD+ T T V  AC+    L
Sbjct: 113 FPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTL 172

Query: 290 E-LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
              G  VH  V+K  Y+ D+ + N+L++MY     + DA  VF  M Q+DVI+W++++ G
Sbjct: 173 RGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKG 232

Query: 347 LAQNG-------------------------------YSQEALKLFESMKV-SRIKPNYIT 374
            A  G                               +  EAL+ F  M     +KPN   
Sbjct: 233 YAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAV 292

Query: 375 IVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYS-----CMIDLLGRAGKLQEAV 428
           +V +L AC+H G ++ G W H         ID  R   S      +ID+  + G++  A 
Sbjct: 293 LVSILSACAHLGALDQGKWIHVY-------IDKNRILLSSNISTALIDMYAKCGRIDCAR 345

Query: 429 KLIHEMPYEPDAVTWRALLGACKVH 453
           ++   + ++ D +TW +++    +H
Sbjct: 346 RVFDGL-HKRDLLTWTSMISGLSMH 369


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/584 (38%), Positives = 346/584 (59%), Gaps = 9/584 (1%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF---EPETFLVNILLNMHVKFSLL 125
           G+R ++ T   L+       A+ +   VH + L       E +  +   LL+M+ K   L
Sbjct: 196 GLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHL 255

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV-RPNMFTYSAVLRA 184
             A  +F  M  RN V+W+ +I  +       +A  L   ML EG+   +  + ++ LR 
Sbjct: 256 VYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRV 315

Query: 185 CDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C SL  LR   QLH  + K G  +D+   ++L+ +YAK G +  A  +F+E+  +D + +
Sbjct: 316 CASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISY 375

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            +++ G+ QN   +EA  ++K+M+      D +T+ S++ AC+ LA L+ G   H  V+ 
Sbjct: 376 GALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVII 435

Query: 302 YDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
               L   + N+L+DMY KCG ++ +  VF +M  +D++SW+TMI+G   +G  +EA  L
Sbjct: 436 RGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTL 495

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F SMK    +P+ +T + ++ ACSH+G V +G + F +M   YGI P  EHY CM+DLL 
Sbjct: 496 FLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLA 555

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           R G L EA + I  MP + D   W ALLGAC++H+N DL    ++ I  L P+  G ++L
Sbjct: 556 RGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVL 615

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LSNI++ + ++DE AEVR   + +G  K PGCSWIE+N  +HAF   D SHP    I   
Sbjct: 616 LSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHE 675

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
           L +++  +  +GY  DT++VLQDLE E+KE ++ YHSEKLAI FG++SL + KTI + KN
Sbjct: 676 LDNILIDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKN 735

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           LR+CGDCHT  K    + N+TI++RD  R+HHF++G CSCGD+W
Sbjct: 736 LRVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 202/394 (51%), Gaps = 12/394 (3%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V  +  T+  ++K C A   +   + +H H  + G   + F+   L++++++ +    A 
Sbjct: 95  VPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAA 154

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML-REGVRPNMFTYSAVLRAC--- 185
            +F +MP R+VV+W  M++ Y +  M   A+  L+ M  R G+RPN  T  ++L      
Sbjct: 155 NVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQH 214

Query: 186 DSLIILRQLHCGIIKVGF---ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
            +L     +H   ++      E  V + +AL+D+YAK   L  A  VF+ M  R+ V W+
Sbjct: 215 GALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWS 274

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           ++IGGF     + EA NL+K M   G      +++ S LR C  LA L +GTQ+H  + K
Sbjct: 275 ALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAK 334

Query: 302 YD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
                DL   N+LL MY K G + +A  +F  +  KD IS+  ++SG  QNG ++EA  +
Sbjct: 335 SGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLV 394

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F+ M+   ++P+  T+V ++ ACSH   ++ G     S+    G+       + +ID+  
Sbjct: 395 FKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSV-IIRGLALETSICNSLIDMYA 453

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           + G++  + ++  +MP   D V+W  ++    +H
Sbjct: 454 KCGRIDLSRQVFDKMPAR-DIVSWNTMIAGYGIH 486



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/383 (28%), Positives = 179/383 (46%), Gaps = 13/383 (3%)

Query: 116 LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
           L  H+    L  A+ +FD++P  +  ++  +I AY        A++L   ML   V PN 
Sbjct: 40  LEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNK 99

Query: 176 FTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           +T+  VL+AC +L  L   R +H     VG  +D+FV +ALID+Y +      A  VF +
Sbjct: 100 YTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAK 159

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEAL-NLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           MP RD+V WN+++ G+A +     A+ +L     R G   + STL S+L        L  
Sbjct: 160 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQ 219

Query: 292 GTQVHVHVLKY-----DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           GT VH + L+      +  +++  ALLDMY KC  L  A  VF  M  ++ ++WS +I G
Sbjct: 220 GTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGG 279

Query: 347 LAQNGYSQEALKLFESMKVSRI-KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
                   EA  LF+ M V  +   +  ++   L  C+    +  G     ++    GI 
Sbjct: 280 FVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMG-TQLHALLAKSGIH 338

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
                 + ++ +  +AG + EA  L  E+  + D +++ ALL     +   + A    KK
Sbjct: 339 ADLTAGNSLLSMYAKAGLINEATMLFDEIAIK-DTISYGALLSGYVQNGKAEEAFLVFKK 397

Query: 466 ILNLDPQDPGTYILLSNIYANSQ 488
           +   + Q P    ++S I A S 
Sbjct: 398 MQACNVQ-PDIATMVSLIPACSH 419



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 21/217 (9%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ   V+ D  T   LI  C    A++  +  H  V+  G   ET + N L++M+ K   
Sbjct: 398 MQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGR 457

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           ++ ++ +FD+MP R++VSW TMI+ Y    +  +A  L + M  +G  P+  T+  ++ A
Sbjct: 458 IDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAA 517

Query: 185 CDSLIILRQLHCGIIKVG---FES-----DVFVRS----ALIDIYAKLGELRNAECVFNE 232
           C         H G++  G   F++      +  R      ++D+ A+ G L  A      
Sbjct: 518 CS--------HSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQS 569

Query: 233 MPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           MP + D+ VW +++G    + ++D    + + +++ G
Sbjct: 570 MPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLG 606


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/575 (38%), Positives = 332/575 (57%), Gaps = 56/575 (9%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYC---DAKMNDKALELLIFMLREG-VRPNMFTYSA 180
           ++ A+ +F QMPE N   W T++       D  +  +AL L   ML +G V+PN FT+ +
Sbjct: 68  IDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127

Query: 181 VLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYA------------------- 218
           VL+AC     LR   Q+H  I+K GF  D FV S L+ +Y                    
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDF 187

Query: 219 ----------------------------KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
                                       +LG++++A+ +F+EMP R +V WN +I G+AQ
Sbjct: 188 DGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQ 247

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
           N    EA+NL++ M+ +    +  TL SVL A   +  LELG  +H++  K   + D +L
Sbjct: 248 NGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVL 307

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            +AL+DMY KCGS+++A+ VF  + +++ I+WS +I   A +G +++A+  F  M  + +
Sbjct: 308 GSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGV 367

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
            PN +  +G+L ACSHAG VE+G + F  M K  G+ P  EHY CM+DLLGRAG L+EA 
Sbjct: 368 TPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAE 427

Query: 429 KLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
           +LI  MP EPD V W+ALLGACK+H+N  +    A+ ++ L P D G+Y+ LSN+YA+  
Sbjct: 428 ELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLG 487

Query: 489 KWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLV 548
            W+ VA VR  M+   I K+PGCSWIE++  IH F V D SH +  +I   L  +  KL 
Sbjct: 488 NWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLR 547

Query: 549 GVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHT 608
             GY P+T  V  + + +++  ++QYHSEK+A+ FGL+S      ++I KNLRIC DCH 
Sbjct: 548 SNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHA 607

Query: 609 FAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             KL + +  + I++RD  R+H F+ G+CSC DYW
Sbjct: 608 SLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/660 (34%), Positives = 360/660 (54%), Gaps = 54/660 (8%)

Query: 36  TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL 95
           T+  + L+  F R     +L  ++     MQ  G   +  T + ++KCC   + ++  K 
Sbjct: 98  TQTWTILISGFARAAGSSELVFSL--FREMQADGACPNQYTLSSVLKCCSRENNIQFGKG 155

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  +L  G   +  L N +L++++K    E A+  F+ M E++VVSW  MI AY     
Sbjct: 156 IHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGD 215

Query: 156 NDKALEL-------------------------------LIFMLREGVRPNMFTYSAVLRA 184
            +K+LE+                               L  M+  G   +  T+S  L  
Sbjct: 216 VEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALIL 275

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL--- 238
             SL ++   RQLH  ++  G  SD ++RS+L+++Y K G +  A  +  ++P   L   
Sbjct: 276 VSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKG 335

Query: 239 -------------VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
                        V W+S++ G+  N   ++ +  ++ M       D  T+ +++ AC  
Sbjct: 336 NFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACAN 395

Query: 286 LALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
             +LE G Q+H ++ K     D  + ++L+DMY K GSL+DA+ +F ++ + +V+ W++M
Sbjct: 396 AGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSM 455

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           ISG A +G  +EA+ LFE M    I PN +T VGVL ACSH G +E+G  +F+ MK  Y 
Sbjct: 456 ISGCALHGQGKEAISLFEGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYH 515

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           I+P  EHY+ M++L GRAG L EA   I E         WR+ L +C++H+N ++    +
Sbjct: 516 INPEVEHYTSMVNLYGRAGHLIEAKNFIFENSISHFTSVWRSFLSSCRLHKNFNMGKSVS 575

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
           + +L   P DP  YILLSN+ +++ +WDE A VR  M  RG+ K+PG SW+++  QIH+F
Sbjct: 576 EMLLQSAPSDPDAYILLSNMCSSNHQWDEAAIVRSLMYQRGVKKQPGQSWVQLKDQIHSF 635

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
            V D SHPQ  +I  +L  LI +L  +GY+ D   V+QD+E EQ E  I +HSEKLA+VF
Sbjct: 636 TVGDRSHPQDKEIYSYLDSLIGRLKEIGYSLDAKLVMQDVEEEQGEVLISHHSEKLALVF 695

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +++ +    IRI KNLRIC DCH F K  +++  + I++RD  R+HHF+  +CSCG+YW
Sbjct: 696 SIINTSPRTPIRIMKNLRICNDCHNFFKYASQLLEREIIVRDTHRFHHFKQSSCSCGEYW 755



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 206/432 (47%), Gaps = 61/432 (14%)

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
           + +H H    G        N LL ++VK S L+ A  LFD++  +N  +WT +IS +  A
Sbjct: 52  RALHGHYFKKGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARA 111

Query: 154 KMNDKALELLIFMLRE----GVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESD 206
             +    EL+  + RE    G  PN +T S+VL+ C   +++   + +H  I++ G   D
Sbjct: 112 AGSS---ELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGD 168

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR--- 263
           V + ++++D+Y K  E   AE  F  M  +D+V WN +IG + +  DV+++L +++    
Sbjct: 169 VVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPN 228

Query: 264 ----------------------------MKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
                                       M   G      T +  L   + L+L+E+G Q+
Sbjct: 229 KDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQL 288

Query: 296 HVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFS----------------RMIQKDV 337
           H  VL +  + D  + ++L++MY KCG ++ A ++                  +  +  +
Sbjct: 289 HGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARM 348

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           +SWS+M+SG   NG  ++ +K F SM    I  +  T+  ++ AC++AG +E G      
Sbjct: 349 VSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQIHAY 408

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457
           ++K  G+       S +ID+  ++G L +A+ +I E   EP+ V W +++  C +H    
Sbjct: 409 IQKI-GLRIDAYVGSSLIDMYSKSGSLDDAL-MIFEQIKEPNVVLWTSMISGCALHGQGK 466

Query: 458 LAICAAKKILNL 469
            AI   + +LNL
Sbjct: 467 EAISLFEGMLNL 478



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 106/197 (53%), Gaps = 4/197 (2%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           LR LH    K G    +   + L+ +Y K   L +A  +F+E+  ++   W  +I GFA+
Sbjct: 51  LRALHGHYFKKGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFAR 110

Query: 251 NSDVDE-ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
            +   E   +L++ M+  G   +Q TL+SVL+ C+    ++ G  +H  +L+     D++
Sbjct: 111 AAGSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVV 170

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           L N++LD+Y KC   E A S F  MI+KDV+SW+ MI    + G  +++L++F +     
Sbjct: 171 LENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKD 230

Query: 368 IKPNYITIVGVLFACSH 384
           +  ++ TI+  L  C +
Sbjct: 231 V-VSWNTIIDGLIQCGY 246


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/630 (36%), Positives = 346/630 (54%), Gaps = 79/630 (12%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP--ERNVVSWTTMISAY 150
           A+ +H      G   + F+ + LL+ +++      A+ LFD MP  +R VV W+ +++A+
Sbjct: 36  ARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAH 95

Query: 151 CDAKMNDKALELLIFMLREG-VRPNMFTYSAVL-------RACDSLIIL----------- 191
                 + A  LL  M R+G V PN+ T++ ++       RA D+++ L           
Sbjct: 96  AARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRP 155

Query: 192 ---------------------RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
                                +QLH   +K G  +D  V +ALID+Y K G+      VF
Sbjct: 156 DATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVF 215

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR--------------------------- 263
           +E    D+   N++I G ++N+ V EAL L+K                            
Sbjct: 216 DESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDL 275

Query: 264 --------MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
                   M+  G   +  T+  VL A   +A L  G   H   L+  + HD+ +++AL+
Sbjct: 276 EAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALV 335

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           DMY KCG ++DA  +F  M+ ++V+SW+ MI G A  G +  A+ +F SM   + KP+ +
Sbjct: 336 DMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMV 395

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
           T   +L AC+ AG  E+G ++FK M   YG+ P  EHY+CM+ LLGRAGKL EA  LI +
Sbjct: 396 TFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISD 455

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
           MP+EPDA  W +LLG+C+VH N DLA  AA+K+ +L+P++ G Y+LLSNIYA+ + WD V
Sbjct: 456 MPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRV 515

Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYA 553
             VR+ M+  G+ KE GCSWIE+  ++H     D SHP +  I + +  L  ++  +G+ 
Sbjct: 516 NRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGFV 575

Query: 554 PDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLT 613
           P T++VL D+E ++K+D +  HSEKLA+  GL+S + G T+R+ KNLRICGDCH   K  
Sbjct: 576 PSTDFVLHDVEEQEKDDILAVHSEKLAVALGLISTSPGTTLRVIKNLRICGDCHEAMKFI 635

Query: 614 AKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +  E + I +RD  R+HHF  G CSCGD+W
Sbjct: 636 SSFEGREISVRDTNRFHHFSGGKCSCGDFW 665



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 150/362 (41%), Gaps = 80/362 (22%)

Query: 165 FMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           F+      P+        ++C +L + R LH      G   D FV S+L+  Y +LG   
Sbjct: 10  FLRHVSFPPDPHLLPTAFKSCPTLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTG 69

Query: 225 NAECVFNEM--PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG-------------- 268
           NA  +F+ M  P R +V W++++   A   D + A  L + M+R G              
Sbjct: 70  NARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVS 129

Query: 269 -----------------------FAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD-- 303
                                     D + ++  L A   + L+ +G Q+H + +K    
Sbjct: 130 GLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCR 189

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVF---------------------------------- 329
            D  +  AL+DMY KCG   + + VF                                  
Sbjct: 190 ADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEF 249

Query: 330 -SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
             R ++ +V+SW+++++   QNG   EA++ F  M+    +PN +TI  VL A ++   +
Sbjct: 250 VDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAAL 309

Query: 389 EDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
             G + H  +++K +  D      S ++D+  + G++++A ++I +     + V+W A++
Sbjct: 310 MHGRSAHCFALRKGFLHDVYVS--SALVDMYAKCGRVKDA-RIIFDTMVSRNVVSWNAMI 366

Query: 448 GA 449
           G 
Sbjct: 367 GG 368


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/631 (37%), Positives = 360/631 (57%), Gaps = 39/631 (6%)

Query: 51  YQR-DLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           Y R D P+ A+     M   G+R  SVT   +I  C     ++  + V  ++   G +  
Sbjct: 207 YARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLN 266

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             +VN L++M++K   ++ A+ LFD+  +RN+V + T++S Y    +  +AL +L  ML+
Sbjct: 267 KVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQ 326

Query: 169 EGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGE--- 222
           +G RP+  T  + + A   L+ L   +  H  +I+ G E    + + +ID+Y K G+   
Sbjct: 327 QGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEM 386

Query: 223 -----------------------LRNAEC-----VFNEMPTRDLVVWNSIIGGFAQNSDV 254
                                  +RN +      VFN++P R+ V WN++I G  Q S  
Sbjct: 387 ACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLF 446

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNAL 312
           ++A+ L++ M+  G  AD+ T+  +  AC  L   EL   VH ++ K     D+ LN AL
Sbjct: 447 EDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTAL 506

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           +DM+ +CG  + AM VF++M ++DV +W+  I  +A  G  + A  LF  M +  +KP+ 
Sbjct: 507 VDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDV 566

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           +  V VL ACSH G VE G  H  S+ + +GI P  EHY CM+DLLGRAG L+EA  LI 
Sbjct: 567 VLFVQVLTACSHGGQVEQGL-HIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIK 625

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
            MP EP+ V W +LL AC+VH+N ++A  AA++I  L PQ  G ++LLSNIYA++ KW +
Sbjct: 626 SMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTD 685

Query: 493 VAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGY 552
           VA VR  +R +G+ K PG S ++VN  IH F   D SHP++  I   L+ +  +    G+
Sbjct: 686 VARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGH 745

Query: 553 APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
            PD + VL D++ ++KE  +  HSEKLAI FGL++  +   IR+ KNLR+C DCH+FAK+
Sbjct: 746 IPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKM 805

Query: 613 TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            + + N+ I++RD  R+H F+ G CSC DYW
Sbjct: 806 ASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/434 (28%), Positives = 204/434 (47%), Gaps = 52/434 (11%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           GV  +  T+  ++  C    A  E   VH  V+  G E + F+ N L++ + +   ++  
Sbjct: 126 GVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHG 185

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
             +F+ M ERNVVSWT++I  Y       +A+ L   M+  G+RP+  T   V+ AC   
Sbjct: 186 HKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAK- 244

Query: 189 IILRQLHCG------IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
             LR L  G      I ++G + +  + +AL+D+Y K G +  A+ +F+E   R+LV++N
Sbjct: 245 --LRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYN 302

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK- 301
           +I+  +A+     EAL +   M + G   D+ T+ S + A   L  L  G   H +V++ 
Sbjct: 303 TILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRN 362

Query: 302 ----YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS------------------ 339
               +D    + N ++DMY KCG  E A  VF  M  K V+S                  
Sbjct: 363 GLEGWDS---IGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAW 419

Query: 340 -------------WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
                        W+TMISGL Q    ++A++LF  M+   IK + +T++G+  AC + G
Sbjct: 420 EVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLG 479

Query: 387 FVE-DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
             E   W H    K   GI       + ++D+  R G  Q A+++ ++M  E D   W A
Sbjct: 480 APELAKWVHTYIEKN--GIPCDMRLNTALVDMFARCGDPQSAMQVFNKMT-ERDVSAWTA 536

Query: 446 LLGACKVHRNTDLA 459
            +G   +  N + A
Sbjct: 537 AIGTMAMEGNGEGA 550



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 119/456 (26%), Positives = 221/456 (48%), Gaps = 47/456 (10%)

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFE--PETF--LVNILLNMHVKFSL--LEEAQVLF 132
           E ++CC     + + K +H  +   G +  P T   LVN    +    SL    +A  LF
Sbjct: 30  ESLRCC---KTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELF 86

Query: 133 --DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
             D   +  +    ++I  Y  A +  +A+ L + ML  GV PN +T+  VL  C  +  
Sbjct: 87  KEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAA 146

Query: 191 L---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
                Q+H  ++K+G E DVF+++ LI  YA+ G + +   VF  M  R++V W S+I G
Sbjct: 147 FCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICG 206

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHD 305
           +A+     EA++L+  M  AG      T+  V+ AC  L  L++G +V  ++  L    +
Sbjct: 207 YARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLN 266

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
            ++ NAL+DMY KCG+++ A  +F   + ++++ ++T++S  A+ G ++EAL + + M  
Sbjct: 267 KVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQ 326

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG-------IDPGREHY----SCM 414
              +P+ +T++  + A +              +  FYG       I  G E +    + +
Sbjct: 327 QGPRPDRVTMLSAISASAQL------------VDLFYGKVCHGYVIRNGLEGWDSIGNVI 374

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474
           ID+  + GK + A ++   M  +   V+W +L       RN D+   +A ++ N  P+  
Sbjct: 375 IDMYMKCGKPEMACRVFDLMSNKT-VVSWNSLTAG--FIRNGDVE--SAWEVFNQIPERN 429

Query: 475 GTY--ILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
             +   ++S +   S  +++  E+ + M+  GI  +
Sbjct: 430 AVFWNTMISGLVQKSL-FEDAIELFREMQGEGIKAD 464



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 151/345 (43%), Gaps = 44/345 (12%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           +++L ++ R    R+   A+  +  M   G R D VT    I        +   K+ H +
Sbjct: 302 NTILSNYARQGLARE---ALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGY 358

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVS----------------- 142
           V+  G E    + N++++M++K    E A  +FD M  + VVS                 
Sbjct: 359 VIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESA 418

Query: 143 --------------WTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
                         W TMIS      + + A+EL   M  EG++ +  T   +  AC  L
Sbjct: 419 WEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYL 478

Query: 189 ---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
               + + +H  I K G   D+ + +AL+D++A+ G+ ++A  VFN+M  RD+  W + I
Sbjct: 479 GAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAI 538

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD 305
           G  A   + + A  L+ +M   G   D      VL AC+    +E G  +H+  L  DH 
Sbjct: 539 GTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQG--LHIFSLMEDHG 596

Query: 306 LILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMIS 345
           +         ++D+  + G L +A  +   M ++ + + W ++++
Sbjct: 597 ISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLA 641


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/575 (38%), Positives = 341/575 (59%), Gaps = 8/575 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           YA +++ C+   AV   + +H  +L  G   +  L   L++++     +  A+ +FD+MP
Sbjct: 71  YATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEMP 130

Query: 137 ER-NVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSLIIL--- 191
            + NV  W  +I AY      + A+EL   ML  G ++P+ FTY  VL+AC +L+ L   
Sbjct: 131 NQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAG 190

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           R++H  +++  + +DVFV + LID+YAK G +  A  VFN+   RD  VWNS+I    QN
Sbjct: 191 REVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQN 250

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILN 309
               EAL L + M   G A   +TL S + A    + L  G ++H +  +  +     L 
Sbjct: 251 GRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLK 310

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV-SRI 368
            +LLDMY K G +  A  +F +++ +++ISW+ MI G   +G++  A +LF  M+  +++
Sbjct: 311 TSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQV 370

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
            P++IT VGVL AC+H G V++    F  M   Y I P  +HY+C++D+LG +G+ +EA 
Sbjct: 371 MPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEAS 430

Query: 429 KLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
            +I  M  +PD+  W ALL  CK+H+N +LA  A +K++ L+P+D G Y+LLSNIYA S 
Sbjct: 431 DVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYAESG 490

Query: 489 KWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLV 548
           KW+E A VRK M  RG+ K   CSWIE+  + H F V D+SHP+ D I + L+ L   + 
Sbjct: 491 KWEEAARVRKLMTNRGLKKIIACSWIELKGKFHGFLVGDASHPRSDDIYEELERLEGLIS 550

Query: 549 GVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHT 608
             GY PDT  V  ++E ++K + +  HSE+LAI FGL+S      + + KNLR+C DCH 
Sbjct: 551 QTGYVPDTTPVFHNVEDDEKRNMVWGHSERLAIAFGLISTPPRTKLLVTKNLRVCEDCHV 610

Query: 609 FAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             KL +++E + I+IRD  RYHHF +G CSC D+W
Sbjct: 611 VIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 645



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 147/307 (47%), Gaps = 11/307 (3%)

Query: 51  YQRDLP--RAMKAMHAMQCHG-VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           Y RD P   A++   AM  +G ++ D+ TY  ++K C A   +   + VH+ V+   +  
Sbjct: 145 YARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAGREVHDRVMRTNWAT 204

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           + F+   L++M+ K   ++EA  +F+    R+   W +MI+A        +AL L   M 
Sbjct: 205 DVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLCRNMA 264

Query: 168 REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
            EG+ P + T  + + A      L   R+LH    + GF S   ++++L+D+YAK G + 
Sbjct: 265 AEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVM 324

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK-RAGFAADQSTLTSVLRAC 283
            A  +F ++  R+L+ WN++I GF  +   D A  L+ RM+  A    D  T   VL AC
Sbjct: 325 VAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSAC 384

Query: 284 TGLALLELGTQVH---VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK-DVIS 339
               +++   +V    V V      +     L+D+    G  ++A  V   M+ K D   
Sbjct: 385 NHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGI 444

Query: 340 WSTMISG 346
           W  +++G
Sbjct: 445 WGALLNG 451



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 12/186 (6%)

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVF 329
           + S   ++LR+C     +  G Q+H  +L      D +L   L+D+Y  CG +  A  VF
Sbjct: 67  NHSNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVF 126

Query: 330 SRMI-QKDVISWSTMISGLAQNGYSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGF 387
             M  Q +V  W+ +I   A++G  + A++L+ +M     +KP+  T   VL AC+    
Sbjct: 127 DEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLD 186

Query: 388 VEDGWN-HFKSMKKFYGIDPGREHYSC--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           +  G   H + M+  +  D     + C  +ID+  + G + EA  + ++     DA  W 
Sbjct: 187 LSAGREVHDRVMRTNWATDV----FVCTGLIDMYAKCGCMDEAWAVFNDTTIR-DAAVWN 241

Query: 445 ALLGAC 450
           +++ AC
Sbjct: 242 SMIAAC 247


>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 704

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/518 (40%), Positives = 315/518 (60%), Gaps = 5/518 (0%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           NIL   ++K   L  A+ LFD+MPERNV +W  M++   +   ++++L   + M REG+ 
Sbjct: 177 NILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMH 236

Query: 173 PNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P+ F   +V R C  L   +  RQ+H  +++ G + D+ V S+L  +Y + G L+  E V
Sbjct: 237 PDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAV 296

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
              +P+  +V  N+II G  QN D + AL  +  M+  G AAD  T  S + +C+ LA L
Sbjct: 297 LRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAAL 356

Query: 290 ELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
             G Q+H  V+K   D ++     L+ MY +CG L D+  VF      D    S MIS  
Sbjct: 357 AQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAY 416

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
             +G+ Q+A++LF+ M     +P+ +T + +L+ACSH+G  E+G + F+ M K YG+ P 
Sbjct: 417 GFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPS 476

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            +HY+C++DLLGR+G L EA  LI  MP  PD V W+ LL ACK  +N D+A   AK+++
Sbjct: 477 VKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVI 536

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
            LDP D  +Y+LLSNI A S++W +V+EVRK MR   + KEPG SW+E+   IH F   D
Sbjct: 537 ELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGD 596

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
            SHP+  +I++ L+ ++ K+   GY+PD + VL D+E E+KE S+ +HSEKLAI F  +S
Sbjct: 597 ESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLS 656

Query: 588 LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           L +G  IR+ KNLR+C DCH   KL +++  + IV+RD
Sbjct: 657 LPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRD 694



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 162/345 (46%), Gaps = 38/345 (11%)

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           +S + RAC +L  LRQLH      G  +D F  + L+  YA LG+L  A  +F  +P R+
Sbjct: 113 FSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRN 172

Query: 238 LVVWNSIIGGFAQNSDV-------------------------------DEALNLYKRMKR 266
           ++ WN + GG+ +N D+                               +E+L  +  M+R
Sbjct: 173 VMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRR 232

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLED 324
            G   D+  L SV R C GL  +  G QVH +V++   D D+ + ++L  MY +CG L++
Sbjct: 233 EGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQE 292

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
             +V   +    ++S +T+I+G  QNG S+ AL+ F  M+   +  + +T V  + +CS 
Sbjct: 293 GEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSD 352

Query: 385 AGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
              +  G   H + MK   G+D      +C++ +  R G L ++ ++        D    
Sbjct: 353 LAALAQGQQIHGQVMKA--GVDKVVPVMTCLVHMYSRCGCLGDSERVFFGY-CGSDTFLL 409

Query: 444 RALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
            A++ A   H +   AI   K+++N    +P     L+ +YA S 
Sbjct: 410 SAMISAYGFHGHGQKAIELFKQMMN-GGAEPSDVTFLALLYACSH 453



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 105/244 (43%), Gaps = 21/244 (8%)

Query: 29  VASCNTITRNSSSLLDD---FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCL 85
           + SCNTI    +   D       FC  R +             GV AD VT+   I  C 
Sbjct: 305 IVSCNTIIAGRTQNGDSEGALEYFCMMRSV-------------GVAADVVTFVSAISSCS 351

Query: 86  ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTT 145
              A+ + + +H  V+  G +    ++  L++M+ +   L +++ +F      +    + 
Sbjct: 352 DLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSA 411

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD-SLIILRQLHCGIIKV--- 201
           MISAY       KA+EL   M+  G  P+  T+ A+L AC  S +    + C  +     
Sbjct: 412 MISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTY 471

Query: 202 GFESDVFVRSALIDIYAKLGELRNAECVFNEMP-TRDLVVWNSIIGGFAQNSDVDEALNL 260
           G +  V   + ++D+  + G L  AE +   MP T D V+W +++       + D A  +
Sbjct: 472 GMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERI 531

Query: 261 YKRM 264
            KR+
Sbjct: 532 AKRV 535


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/583 (37%), Positives = 350/583 (60%), Gaps = 13/583 (2%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V A+S  Y  +++   A   V++ + VH H++  G+     L+  L+ +      +    
Sbjct: 5   VAANSAAYEAIVR---AGPRVKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTH 61

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
           +LF  +P  +   + ++I +    ++    +     ML   V P+ +T+++V+++C  L 
Sbjct: 62  LLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLS 121

Query: 190 ILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            LR    +HC  +  GF  D +V++AL+  Y+K G++  A  VF+ MP + +V WNS++ 
Sbjct: 122 ALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVS 181

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDH 304
           GF QN   DEA+ ++ +M+ +GF  D +T  S+L AC     + LG+ VH +++    D 
Sbjct: 182 GFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDL 241

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           ++ L  AL+++Y +CG +  A  VF +M + +V +W+ MIS    +GY Q+A++LF  M+
Sbjct: 242 NVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKME 301

Query: 365 VS-RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
                 PN +T V VL AC+HAG VE+G + +K M K Y + PG EH+ CM+D+LGRAG 
Sbjct: 302 DDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGF 361

Query: 424 LQEAVKLIHEMPYEPDAVT---WRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480
           L EA K IH++     A     W A+LGACK+HRN DL +  AK+++ L+P +PG +++L
Sbjct: 362 LDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVML 421

Query: 481 SNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHL 540
           SNIYA S K DEV+ +R  M    + K+ G S IEV  + + F++ D SH +  +I ++L
Sbjct: 422 SNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYL 481

Query: 541 KHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNL 600
           + LI +   +GYAP +  V+  +E E+KE +++YHSEKLA+ FGL+  T    I I KNL
Sbjct: 482 ETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLK-TVDVAITIVKNL 540

Query: 601 RICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           RIC DCH+  K  + + N+ I +RD +R+HHFQ+G+CSC DYW
Sbjct: 541 RICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 142/269 (52%), Gaps = 9/269 (3%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M    V   + T+  +IK C    A+   K VH H +  GF  +T++   L+  + K   
Sbjct: 98  MLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGD 157

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +E A+ +FD+MPE+++V+W +++S +    + D+A+++   M   G  P+  T+ ++L A
Sbjct: 158 MEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSA 217

Query: 185 C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C    ++ +   +H  II  G + +V + +ALI++Y++ G++  A  VF++M   ++  W
Sbjct: 218 CAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAW 277

Query: 242 NSIIGGFAQNSDVDEALNLYKRMK-RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
            ++I  +  +    +A+ L+ +M+   G   +  T  +VL AC    L+E G  V+  + 
Sbjct: 278 TAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMT 337

Query: 301 KYDHDLIL----NNALLDMYCKCGSLEDA 325
           K  + LI     +  ++DM  + G L++A
Sbjct: 338 K-SYRLIPGVEHHVCMVDMLGRAGFLDEA 365



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 128/282 (45%), Gaps = 29/282 (10%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++  + M+  G   DS T+  L+  C    AV     VH +++S G +    L   L+N
Sbjct: 192 AIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALIN 251

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNMF 176
           ++ +   + +A+ +FD+M E NV +WT MISAY       +A+EL   M  + G  PN  
Sbjct: 252 LYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNV 311

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           T+ AVL AC         H G+++ G    V+ R  +   Y  +  + +  C+ + +   
Sbjct: 312 TFVAVLSAC--------AHAGLVEEG--RSVYKR--MTKSYRLIPGVEHHVCMVDMLGR- 358

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
                     GF     +DEA     ++   G A   +  T++L AC      +LG ++ 
Sbjct: 359 ---------AGF-----LDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIA 404

Query: 297 VHVLKYDHDLILNNALL-DMYCKCGSLEDAMSVFSRMIQKDV 337
             ++  + D   ++ +L ++Y   G  ++   +   M++ ++
Sbjct: 405 KRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNL 446


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/597 (38%), Positives = 341/597 (57%), Gaps = 46/597 (7%)

Query: 90  VEEAKLVHNHVLSGGF--EPE---TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWT 144
           + E K +H  +L  G   +P+    F+ +I LN     + L  +  + D      + ++ 
Sbjct: 22  LRELKQIHTQLLINGLLNDPQLVGQFVASIALN---NPNNLHYSNQVLDNSQNPTLFTFN 78

Query: 145 TMISAYCDAKMNDKALELLIFMLREG--VRPNMFTYSAVLRACDSLI---ILRQLHCGII 199
           +MI A+  +    ++      +L     + P+ +T++ ++R    L+       +H   +
Sbjct: 79  SMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSVHGAAV 138

Query: 200 KVGFESDVFVRSALIDIYA-------------------------------KLGELRNAEC 228
           K GFE D  V+S LI +YA                               K+G++  A  
Sbjct: 139 KYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFARK 198

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           +F++M  +D + WN++I G+ Q     EAL+L+  M+R G   ++ ++ SVL AC+ L  
Sbjct: 199 LFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGA 258

Query: 289 LELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           L+ G   H ++   K    L L  AL+DMY KCG++  AM VF  M +K+V +WS+ I G
Sbjct: 259 LDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGG 318

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
           LA NG  ++ L+LF  MK   ++PN IT V VL  CS  G VE+G  HF+SM K YGI+P
Sbjct: 319 LAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEP 378

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
             EHY CM+DL GRAG L EA+  I+ MP  P    W ALL ACK++RN ++   A++KI
Sbjct: 379 RLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASRKI 438

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
           + L+ ++ G Y+LLSNIYA+S+ WD V+ VR+TM  +G+ K+PGCS IEV  ++H F V 
Sbjct: 439 VELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVG 498

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D SHP+  +I   L  + ++L   GY  +TN V  D+E E+KED++  HSEK+AI FGL+
Sbjct: 499 DKSHPRYAEIQVMLGEISRRLKLSGYVANTNPVFFDIEEEEKEDALCMHSEKIAIAFGLI 558

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           SL+    IRI KNLR+C DCH   K+ +K  N+ IV+RD  R+HHF+DG CSC  YW
Sbjct: 559 SLSPDVPIRIVKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHFRDGECSCKGYW 615



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 100/219 (45%), Gaps = 15/219 (6%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+   + MQ  GV+ + V+   ++  C    A+++ +  H ++          L   L++
Sbjct: 227 ALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALID 286

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   + +A  +F  M E+NV +W++ I         +K LEL   M ++ V+PN  T
Sbjct: 287 MYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEIT 346

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKV-GFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           + +VLR C  + ++   R+    + KV G E  +     ++D+Y + G L  A    N M
Sbjct: 347 FVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSM 406

Query: 234 PTRDLV-VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
           P R  V  W +++           A  +Y+ M+    A+
Sbjct: 407 PVRPHVGAWGALL----------NACKIYRNMEMGELAS 435


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/509 (42%), Positives = 323/509 (63%), Gaps = 13/509 (2%)

Query: 143 WTTMISAYCDAKMNDKALELLIFMLREGVRP-NMFTYSAVLRACDSLIILR---QLHCGI 198
           W TMI  Y  +    +A+ L + M+ +G+ P N FT+  +L +C  L  L    ++H  I
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEAL 258
           IK GFESD+FVR+ALI +Y+  G L  A  +F+E   RDLV +N++I G+A+ +  + AL
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHDLILNNALLDM 315
            L+  M+ +    D+ TL +VL AC  L   +LG +++   ++   ++ + IL  A++DM
Sbjct: 122 CLFGEMQNS----DEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDM 177

Query: 316 YCKCGSLEDAMSVFSRMIQ--KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           Y KCGS++ A+ +F R+ +  K    +++MI+GLAQ+G  + A+ +F  +  + +KP+ +
Sbjct: 178 YAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEV 237

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
           T VGVL AC H+G +E+G   F+SM   YGI P  EHY CM+DLLGR G L+EA  L+ +
Sbjct: 238 TFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQK 297

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
           MP+E ++V WRALL AC+ H N  +   A +K+L ++ Q    Y+LLSNI A++ +W+E 
Sbjct: 298 MPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEA 357

Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYA 553
            +VRK M   GI K PG S+IE+   IH F  +D SHPQ  +I   LK +  +L   GY 
Sbjct: 358 RQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYV 417

Query: 554 PDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLT 613
           P+T  V+ D++ E+KE  + YHSEKLA+ FGLM  +   TIRI KNLRIC DCH   KL 
Sbjct: 418 PNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLV 477

Query: 614 AKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           +++  + I +RD +R+HHF++G+CSC D+
Sbjct: 478 SEIYGREITVRDTMRFHHFRNGSCSCMDF 506



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 153/314 (48%), Gaps = 17/314 (5%)

Query: 51  YQR-DLPRAMKAMH-AMQCHGVRA-DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           Y R D PR    ++ +M   G+   ++ T+  L+  C    ++E    VH+H++  GFE 
Sbjct: 9   YSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFES 68

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           + F+ N L++++  F  L  A+ LFD+   R++VS+ TMI  Y +    + AL L     
Sbjct: 69  DLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCL----F 124

Query: 168 REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVG-FESDVFVRSALIDIYAKLGEL 223
            E    +  T  AVL AC  L      ++L+   I+ G F  +  + +A++D+YAK G +
Sbjct: 125 GEMQNSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSI 184

Query: 224 RNAECVFNEMP--TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
            +A  +F  +    +   V+NS+I G AQ+   + A+ +++ +   G   D+ T   VL 
Sbjct: 185 DSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLC 244

Query: 282 ACTGLALLELGTQVH---VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDV 337
           AC    L+E G ++     +       +     ++D+  + G LE+A  +  +M  + + 
Sbjct: 245 ACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANS 304

Query: 338 ISWSTMISGLAQNG 351
           + W  ++S    +G
Sbjct: 305 VIWRALLSACRTHG 318



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 91/155 (58%), Gaps = 7/155 (4%)

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS-TLTSVLRACTGLALLELGTQVHVH 298
           +WN++I G++++ +  EA+ LY  M   G A   + T   +L +C  L+ LE G +VH H
Sbjct: 1   MWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSH 60

Query: 299 VLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           ++K  ++ DL + NAL+ +Y   G+L  A ++F   + +D++S++TMI G A+    + A
Sbjct: 61  IIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESA 120

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           L LF  M+ S    + +T+V VL AC+  G  + G
Sbjct: 121 LCLFGEMQNS----DEVTLVAVLSACARLGAFDLG 151



 Score = 38.9 bits (89), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSG-GFEPETFLVNILLNMHVKFSLLEE 127
           G++ D VT+  ++  C     +EE K +   + +  G +P+      ++++  ++  LEE
Sbjct: 231 GLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEE 290

Query: 128 AQVLFDQMP-ERNVVSWTTMISAYCDAKMNDKALEL 162
           A  L  +MP E N V W  ++SA C    N K  E+
Sbjct: 291 AYDLVQKMPFEANSVIWRALLSA-CRTHGNVKIGEI 325


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/558 (38%), Positives = 333/558 (59%), Gaps = 10/558 (1%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVS---WTTMISAYCD 152
           +H H++  GF+    ++    +       +  A  L   + +  V     ++T+I AY +
Sbjct: 26  LHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDARVYDAFLFSTIIRAYAE 85

Query: 153 AKMND-KALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVF 208
           +  +   A+     ML  G+ PN + +  VL+AC  L  L   + +H  ++K GF+ D+F
Sbjct: 86  SSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIF 145

Query: 209 VRSALIDIYAKL-GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
           V++ ++ +Y    G +  A  +F+EMP  D V W ++IGG+A+      A+ L+++M+ A
Sbjct: 146 VQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIA 205

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDA 325
           G   D  T+ SVL ACT L  LELG  +  ++ K      + L+NAL+DM+ KCG ++ A
Sbjct: 206 GVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKA 265

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
           + +F  M ++ ++SW+++I GLA +G   EA+ LFE MK S + P  I  +G+L ACSH+
Sbjct: 266 LGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHS 325

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G VE G  +F  M + +GI P  EHY CM+DLL RAG + EA++ +  MP EP+ + WR 
Sbjct: 326 GLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRT 385

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           L+ AC+VH    L    +K+++  +P     Y+LLSNIY     W++ +++R  M  +GI
Sbjct: 386 LISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGI 445

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            K PG + IE++ +IH F V D SH Q ++I K +  + +++   GYAP T  V  D++ 
Sbjct: 446 QKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNEMGREMKRAGYAPTTTEVFLDIDE 505

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           E KED++  HSEKLAI F L++   G  IRI KNLR+CGDCH+ +K  +K+ N+ IV+RD
Sbjct: 506 EDKEDALSRHSEKLAIAFALLNTPPGSPIRITKNLRVCGDCHSASKFISKIYNREIVMRD 565

Query: 626 PIRYHHFQDGNCSCGDYW 643
             R+HHF+DG CSCGD+W
Sbjct: 566 RSRFHHFRDGQCSCGDFW 583



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 150/281 (53%), Gaps = 11/281 (3%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA-ECVFNEMPTR--D 237
           +L+AC++L  L QLH  IIK+GF+++  V +      + L  +  A   VF+    R  D
Sbjct: 13  ILQACNTLPKLAQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDARVYD 72

Query: 238 LVVWNSIIGGFAQNSDVD-EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
             ++++II  +A++S     A+  Y  M   G + ++     VL+AC GL  L LG  VH
Sbjct: 73  AFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVH 132

Query: 297 VHVLK--YDHDLILNNALLDMYCKC-GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
             ++K  +D D+ + N ++ MYC C G +E A  +F  M + D ++W+ MI G A+ G S
Sbjct: 133 GSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQS 192

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYS 412
             A+ LF  M+++ + P+ +T+V VL AC+  G +E G W   +S  +   +    E  +
Sbjct: 193 AGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKW--IESYIEKERVLKTVELSN 250

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            ++D+  + G + +A+ L   M  +   V+W +++    +H
Sbjct: 251 ALVDMFAKCGDVDKALGLFRNMS-KRTIVSWTSVIVGLAMH 290



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 154/317 (48%), Gaps = 20/317 (6%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS- 123
           M  +G+  +   +  ++K C     +   K VH  ++  GF+ + F+ N +++M+   S 
Sbjct: 100 MLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSG 159

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
            +E A+ LFD+MP+ + V+WT MI  Y     +  A+ L   M   GV P+  T  +VL 
Sbjct: 160 GMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLS 219

Query: 184 ACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           AC  L  L   + +   I K      V + +AL+D++AK G++  A  +F  M  R +V 
Sbjct: 220 ACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVS 279

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH-- 298
           W S+I G A +    EA++L++ MK +G   +      +L AC+   L+E G Q      
Sbjct: 280 WTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMT 339

Query: 299 -----VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGY 352
                V K +H       ++D+  + G + +A+    RM I+ + I W T+IS    +G 
Sbjct: 340 RQFGIVPKIEH----YGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHG- 394

Query: 353 SQEALKLFESMKVSRIK 369
               LKL ES+    I+
Sbjct: 395 ---ELKLGESISKQLIR 408


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/577 (37%), Positives = 335/577 (58%), Gaps = 4/577 (0%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R DS T+   +  C     +   + V +     G++ + F+ + LL+++ ++  + +A  
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           +F +MP R+ V+W+TM++ +  A     A+++   M  +GV+ +      V++AC +   
Sbjct: 165 VFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARN 224

Query: 191 LR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           +R    +H  +++ G   DV   ++L+D+YAK G L  A  VF  M  R+ V W+++I G
Sbjct: 225 VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISG 284

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDL 306
           FAQN   DEAL L++ M+ +G   D   L S L AC+ +  L+LG  VH  +++ +D + 
Sbjct: 285 FAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNC 344

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
           IL  A +DMY KCGSL  A  +F+ +  +D+I W+ MI+    +G  Q+AL LF+ M  +
Sbjct: 345 ILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNET 404

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
            ++P++ T   +L A SH+G VE+G   F  M   + I P  +HY C++DLL R+G ++E
Sbjct: 405 GMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEE 464

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           A  L+  M  EP    W ALL  C  ++  +L    A  IL L P D G   L+SN+YA 
Sbjct: 465 ASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAA 524

Query: 487 SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
           ++KWD+V +VRK M+  G  K PGCS IE+    H F + D SHPQ ++I   +  L  +
Sbjct: 525 TKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLE 584

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           +  +GY P T +V  DLE E KE  + YHSE+LAI FGL++   G  + I KNLR+CGDC
Sbjct: 585 MRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDC 644

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           H   K  +K+ ++ IV+RD  R+HHF+DG CSC DYW
Sbjct: 645 HDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 173/356 (48%), Gaps = 23/356 (6%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+  GV+ D V    +I+ C A   V     VH H+L  G   +      L++
Sbjct: 193 AIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVD 252

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K  LL+ A  +F  M  RN VSW+ MIS +     +D+AL L   M   G++P+   
Sbjct: 253 MYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGA 312

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             + L AC ++  L   R +H G I   F+ +  + +A ID+Y+K G L +A+ +FN + 
Sbjct: 313 LVSALLACSNIGFLKLGRSVH-GFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMIS 371

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE---- 290
            RDL++WN++I     +    +AL L++ M   G   D +T  S+L A +   L+E    
Sbjct: 372 DRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKL 431

Query: 291 -LGTQV-HVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS-WSTMISGL 347
             G  V H  +   +   +    L+D+  + G +E+A  + + M  +  ++ W  ++SG 
Sbjct: 432 WFGRMVNHFKITPAEKHYV---CLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGC 488

Query: 348 AQNGYSQEALKLFESM--KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
             N    + L+L ES+   +  ++P+    VGVL   S+       W+  + ++K 
Sbjct: 489 LNN----KKLELGESIADNILELQPDD---VGVLALVSNLYAATKKWDKVRQVRKL 537



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 130/273 (47%), Gaps = 7/273 (2%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF-A 249
           L +LH  +I     S   + S+L   YA+ G+L  AE           +   + I    +
Sbjct: 27  LARLHALLIVSSSASHTLI-SSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAHS 85

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           +      AL +++ +  A    D +T T  L AC  L  L  G  V        Y  D+ 
Sbjct: 86  RRGSPASALRVFRALPPAA-RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVF 144

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + ++LL +Y + G++ DA+ VF RM ++D ++WSTM++G    G   +A++++  M+   
Sbjct: 145 VCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDG 204

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           +K + + ++GV+ AC+ A  V  G +    + + +G+       + ++D+  + G L  A
Sbjct: 205 VKGDEVVMIGVIQACTAARNVRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLLDVA 263

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            ++   M +  D V+W A++     +  +D A+
Sbjct: 264 CRVFGLMVHRND-VSWSAMISGFAQNGQSDEAL 295


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/554 (40%), Positives = 332/554 (59%), Gaps = 14/554 (2%)

Query: 102 SGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALE 161
           SG F  + +  + LL+M+   S   +A+  FD++P+ N V  T M S Y    +   +LE
Sbjct: 122 SGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLE 181

Query: 162 LLIFMLREGVR------PNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALID 215
           L   M+             +  +SA  R  D  +    LH  I K+GFE +  V + ++D
Sbjct: 182 LFRAMIASDSASVVDEAAALVAFSASARVPDRGVTA-SLHALIAKIGFERNAGVVNTMLD 240

Query: 216 IYAKLG--ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR--AGFAA 271
            YAK G  +L  A  VF+ M  RD+V WNS+I  +AQN    EA+ LY +M     G   
Sbjct: 241 SYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKC 299

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVF 329
           +   L++VL AC     ++ G ++H  V++   + ++ +  +++DMY KCG +E A   F
Sbjct: 300 NAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAF 359

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
            ++ +K+++SWS MI+G   +G  QEAL++F  MK S ++PNYIT + VL ACSHAG ++
Sbjct: 360 RKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLD 419

Query: 390 DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           +G   + +MK+ +GI+ G EHY CM+DLLGRAG L EA  LI EM  +PDA  W ALL A
Sbjct: 420 EGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSA 479

Query: 450 CKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEP 509
           C++H+N +LA  + K++  LD  + G Y+LLSNIYA ++ W +V  +R  ++ R I K P
Sbjct: 480 CRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPP 539

Query: 510 GCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKE 569
           G S  E+  +I+ F V D SHPQ  +I  +L+ L++++   GY P+T  VL DL+ E+KE
Sbjct: 540 GYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKE 599

Query: 570 DSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRY 629
            +++ HSEKLA+ F LM+      I I KNLR+C DCHT  K   K+  + I+IRD  R+
Sbjct: 600 SALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRF 659

Query: 630 HHFQDGNCSCGDYW 643
           HHF+DG CSC DYW
Sbjct: 660 HHFKDGLCSCRDYW 673



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 101/209 (48%), Gaps = 21/209 (10%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G++ ++V  + ++  C    A++  K +HN V+  G E   ++   +++M+ K   +E A
Sbjct: 296 GIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMA 355

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
              F ++ E+N++SW+ MI+ Y       +ALE+   M R G+RPN  T+ +VL AC   
Sbjct: 356 SRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACS-- 413

Query: 189 IILRQLHCGII------------KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
                 H G++            + G E+ V     ++D+  + G L  A  +  EM  +
Sbjct: 414 ------HAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVK 467

Query: 237 -DLVVWNSIIGGFAQNSDVDEALNLYKRM 264
            D  +W +++     + +V+ A    KR+
Sbjct: 468 PDAAIWGALLSACRIHKNVELAEMSVKRL 496


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/599 (37%), Positives = 347/599 (57%), Gaps = 25/599 (4%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V+ + VT+  L+       A+   + +H H+     E +T + N L+  + K   + +A+
Sbjct: 323 VQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAR 382

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN----MFTYSAVLRAC 185
            +F+++  R+++SW +M++ Y   +   +  ++   M+  G+ P+       ++A  R  
Sbjct: 383 EIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDS 442

Query: 186 DSLIILR---QLHCGIIKVGFESDVF--VRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
             LI  R   ++H  I++      V   V +A++ +YAK   + +AE +F  M  RD   
Sbjct: 443 SGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYS 502

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           WN+++ G+++N+  ++ L ++  + + GF  D  +L+ +L +C  L  L+LG Q H  V 
Sbjct: 503 WNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVA 562

Query: 301 KY---------DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           K          D  L +NNAL+ MY KCGS++DA  VF +M +KDV SW+ MI+G A +G
Sbjct: 563 KLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHG 622

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
            + EAL+LFE MK   IKPN +T + +L AC+H G V++G  +F SM   YG+ P  EHY
Sbjct: 623 LAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYFDSMYNDYGLSPSIEHY 682

Query: 412 SCMIDLLGRAGKLQEAVKLIH-----EMPYEPDAVT-WRALLGACKVHRNTDLAICAAKK 465
           +CMIDL GR+G+   A  L+        PY  D +  W+ LLGAC   +  DL + AA K
Sbjct: 683 ACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWKVLLGACHASKQLDLGVEAATK 742

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
           IL L+P+D  TYILL+N+YA+S  W++  +VRK MR +G+ KE GCSWI+   + H F  
Sbjct: 743 ILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRDKGLRKEVGCSWIDTGNRRHVFVA 802

Query: 526 ADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGL 585
            D  HPQ  +I + L  L      +GY P T  VL D++  +KE  +  HSEKLA+ FGL
Sbjct: 803 GDVYHPQRKEIYEKLAQLNYSCRRMGYVPMTELVLHDVDETEKEAILGCHSEKLAVSFGL 862

Query: 586 MSLTQGK-TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           ++   G   IR+ KNLR+C DCH++ K  + +E + I++RD  R+H F+DG+CSCGDYW
Sbjct: 863 LNCGVGNGVIRVMKNLRVCEDCHSWMKFASLLEKREILLRDSQRFHLFRDGSCSCGDYW 921



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 101/296 (34%), Positives = 161/296 (54%), Gaps = 9/296 (3%)

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
            NH  S  F       +  L    +   L+ AQ LFD  P R+V+SW+ +I+AY      
Sbjct: 43  QNHGFSSQFIFRCSACSKFLVSQSEHERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNF 102

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLR-ACDS--LIILRQLHCGIIKVGFESDVFVRSAL 213
            +A  L   M+ EG++PN F+ +++L+ +C +  + + RQLH   I+ GF  D  +R+A 
Sbjct: 103 AQAFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAW 162

Query: 214 IDIYAKLGELRNAECVFNE--MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
           I +Y++ G L +A+ VF+E  +   D+++WNSII  +  +    E L L+ +M   G  A
Sbjct: 163 ITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVA 222

Query: 272 -DQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI-LNNALLDMYCKCGSLEDAMSVF 329
             + T  SV+ AC      + G  VH  ++K   +   L N+L+  Y KCG+L+ A  +F
Sbjct: 223 PTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATNLWNSLVTFYGKCGNLQHASQLF 282

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESM-KVS-RIKPNYITIVGVLFACS 383
            R+ +KDV+SW+ MI+   Q G  + AL LF  M KV   ++PN +T + +L A S
Sbjct: 283 ERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVS 338



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 203/412 (49%), Gaps = 23/412 (5%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           +  +A      M   G++ +  + A L+K   +   +   + +H   +  GF  ++ +  
Sbjct: 101 NFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRA 160

Query: 114 ILLNMHVKFSLLEEAQVLFDQ--MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG- 170
             + M+ +  +LE+AQ +FD+  +   +++ W ++I+AY       + L L   M+  G 
Sbjct: 161 AWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGV 220

Query: 171 VRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
           V P   TY++V+ AC S    +    +H  IIK G E+     S L+  Y K G L++A 
Sbjct: 221 VAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATNLWNS-LVTFYGKCGNLQHAS 279

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA--GFAADQSTLTSVLRACTG 285
            +F  +  +D+V WN++I    Q  + + AL L++RM +       ++ T  S+L A +G
Sbjct: 280 QLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSG 339

Query: 286 LALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L+ L  G ++H H+  L  + D  + N+L+  Y KC  +  A  +F R++ +D+ISW++M
Sbjct: 340 LSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSM 399

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           ++G  QN        +F+ M +S I+P+  ++  +  A S       G  +F+  K+ +G
Sbjct: 400 LAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRD---SSGLIYFRRGKEIHG 456

Query: 404 -----IDPGREHYS---CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
                I PG    S    ++ +  +  ++ +A K+   M    D+ +W A++
Sbjct: 457 YILRRITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMK-NRDSYSWNAMM 507


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/598 (37%), Positives = 348/598 (58%), Gaps = 46/598 (7%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA--QVLFDQMPERNVVSWTTMI 147
           + + K +H HVL  G +   +++  L+    K  +  +   + + + +  RN   WT +I
Sbjct: 63  LNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWTAVI 122

Query: 148 SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKV-GF 203
             Y      D+A+ +   M +E + P  FT+SA+L+AC S+  L   RQ H    ++ GF
Sbjct: 123 RGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGF 182

Query: 204 ------------------------------ESDVFVRSALIDIYAKLGELRNAECVFNEM 233
                                         E DV   + LI  YA++G + +A  +F  +
Sbjct: 183 CFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESL 242

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           PT+D+V W +++ GFAQN+   EAL  + RM+++G  AD+ T+   + AC  L   +   
Sbjct: 243 PTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYAD 302

Query: 294 QVHVHVLK------YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
           +  V + +       DH +++ +AL+DMY KCG++E+A++VF  M  K+V S+S+MI GL
Sbjct: 303 RA-VQIAQKSGYSPSDH-VVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGL 360

Query: 348 AQNGYSQEALKLFESMKV-SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
           A +G +QEAL LF  M   + IKPN +T VG L ACSH+G V+ G   F SM + +G++P
Sbjct: 361 ATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEP 420

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
            R+HY+CM+DLLGRAG+LQEA++LI  M  EP    W ALLGAC++H N D+A  AA+ +
Sbjct: 421 TRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHL 480

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSW-IEVNKQIHAFNV 525
             L+P   G YILLSN+Y+++  W  V  VRK ++ +G+ K P  SW ++ N Q+H F  
Sbjct: 481 FELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFP 540

Query: 526 ADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGL 585
            + +HP   KI   L+ L+++L  +GY PD + V  D+    K   +  H+EKLA+ F L
Sbjct: 541 GNLNHPMSKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSL 600

Query: 586 MSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           ++  +  TI+I KNLR+C DCH F +L +++  + I++RD +R+HHF+ G CSCGD+W
Sbjct: 601 LTTNRDYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 161/398 (40%), Gaps = 85/398 (21%)

Query: 182 LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA--ECVFNEMPTRDLV 239
           L  C +L  ++Q+H  +++ G +   ++ + LI    KLG   +     V   +  R+  
Sbjct: 57  LDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPF 116

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
           +W ++I G+      DEA+ +Y  M++        T +++L+AC  +  L LG Q H   
Sbjct: 117 LWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQT 176

Query: 300 LKYDHD--LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS------------------ 339
            +      + + N ++DMY KCGS+  A  VF  M ++DVIS                  
Sbjct: 177 FRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAA 236

Query: 340 -------------WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC---- 382
                        W+ M++G AQN   QEAL+ F+ M+ S I+ + +T+ G + AC    
Sbjct: 237 DLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLG 296

Query: 383 ---------------------------------SHAGFVEDGWNHFKSMKKFYGIDPGRE 409
                                            S  G VE+  N F SM      +    
Sbjct: 297 ASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMN-----NKNVF 351

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEM----PYEPDAVTWRALLGACKVHRNTDLA---ICA 462
            YS MI  L   G+ QEA+ L H M      +P+ VT+   L AC      D       +
Sbjct: 352 SYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFAS 411

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTM 500
             +   ++P     Y  + ++   + +  E  E+ KTM
Sbjct: 412 MYQTFGVEPTR-DHYTCMVDLLGRAGRLQEALELIKTM 448


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/589 (37%), Positives = 344/589 (58%), Gaps = 29/589 (4%)

Query: 60  KAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMH 119
           +    MQCHG          L K  L  H   ++ LVH +        + F V++ L   
Sbjct: 136 RVFEGMQCHGF---------LFKFGLVFHHFVKSSLVHMY-------SKCFHVDLAL--- 176

Query: 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
               +LE      D   + +   + ++++A  ++    +A+E+L  M+ EGV  +  TY 
Sbjct: 177 ---QVLESEHGNIDN--DNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYV 231

Query: 180 AVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           +V+  C  +  L    Q+H  ++K G   DVFV S L+D++ K G++ +A  VF+ +  R
Sbjct: 232 SVMGLCGQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNR 291

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           ++VVW S++  + QN + +E LNL   M R G  +++ T   +L A  G+A L  G  +H
Sbjct: 292 NVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLH 351

Query: 297 VHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
             V  L   + +I+ NAL++MY KCG ++ +  VF  M  +D+I+W+ MI G +Q+G  +
Sbjct: 352 ARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGK 411

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414
           +AL LF+ M  +   PN++T VGVL AC+H   V +G+ +   + K + ++PG EHY+C+
Sbjct: 412 QALLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYTCV 471

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474
           + +L RAG L+EA   +     + D V WR LL AC +HRN +L    A+ IL +DP+D 
Sbjct: 472 VAVLCRAGMLEEAENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQMDPRDM 531

Query: 475 GTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQID 534
           GTY LLSN+YA ++ WD V  +RK MR R + KEPG SWIE+   +H F+   S+HP+  
Sbjct: 532 GTYTLLSNMYAKARSWDSVTMIRKMMRERNVKKEPGVSWIEIRNAVHVFSSDGSNHPECI 591

Query: 535 KINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTI 594
           +I   ++ L++ +  +GY P+   VL D+E EQKE  + YHSEKLAI +GLM +     I
Sbjct: 592 QIYNKVQLLLEMIKQLGYVPNIEAVLHDVEDEQKESYLNYHSEKLAIAYGLMKIPSPAPI 651

Query: 595 RIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           R+ KNLRIC DCHT  KL +K+ N+ I++RD  R+HHF+DG C+C D+W
Sbjct: 652 RVIKNLRICEDCHTAVKLISKVTNRLIIVRDASRFHHFRDGTCTCTDHW 700



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 166/320 (51%), Gaps = 18/320 (5%)

Query: 44  DDFTRFCYQR---------DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAK 94
           +D   FCY            L  A++ +  M   GV  DSVTY  ++  C     +    
Sbjct: 188 NDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGL 247

Query: 95  LVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK 154
            VH  +L GG   + F+ ++L++M  K   +  A+ +FD +  RNVV WT++++AY    
Sbjct: 248 QVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNG 307

Query: 155 MNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRS 211
             ++ L LL  M REG   N FT++ +L A   +  LR    LH  + K+G ++ V V +
Sbjct: 308 EFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVIVGN 367

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
           ALI++Y+K G + ++  VF +M  RD++ WN++I G++Q+    +AL L++ M  AG   
Sbjct: 368 ALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAGECP 427

Query: 272 DQSTLTSVLRACTGLALLELG----TQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMS 327
           +  T   VL AC  LAL+  G     Q+  H  K +  L     ++ + C+ G LE+A +
Sbjct: 428 NHVTFVGVLSACAHLALVNEGFYYLNQLMKH-FKVEPGLEHYTCVVAVLCRAGMLEEAEN 486

Query: 328 VF-SRMIQKDVISWSTMISG 346
              +  ++ DV++W  +++ 
Sbjct: 487 FMRTTQVKWDVVAWRVLLNA 506



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 166/352 (47%), Gaps = 12/352 (3%)

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV 171
           +N L+N++VK S L  A+ LFD+M  R+VVS+  ++  Y  +  + + ++L   M+    
Sbjct: 58  LNSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLY 117

Query: 172 RPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
           +PN + ++ VL AC     +    Q H  + K G     FV+S+L+ +Y+K   +  A  
Sbjct: 118 QPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQ 177

Query: 229 VF-----NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           V      N     D   +NS++    ++  + EA+ +  RM   G   D  T  SV+  C
Sbjct: 178 VLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLC 237

Query: 284 TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
             +  L LG QVH  +LK     D+ + + L+DM+ KCG +  A  VF  +  ++V+ W+
Sbjct: 238 GQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWT 297

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
           ++++   QNG  +E L L   M       N  T   +L A +    +  G      ++K 
Sbjct: 298 SLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKL 357

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            GI       + +I++  + G +  +  +  +M    D +TW A++     H
Sbjct: 358 -GIKNRVIVGNALINMYSKCGCIDSSYDVFFDMR-NRDIITWNAMICGYSQH 407



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 123/265 (46%), Gaps = 33/265 (12%)

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
           E ++   ++LI++Y K  +LR A  +F+EM  R +V +N ++GG+  + +  E + L+K 
Sbjct: 52  EFNIIQLNSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKN 111

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD---HDLILNNALLDMYCKCG 320
           M  + +  ++   T+VL AC     +  G Q H  + K+    H  +  ++L+ MY KC 
Sbjct: 112 MVSSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFV-KSSLVHMYSKCF 170

Query: 321 SLEDAMSVFSRM-----IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITI 375
            ++ A+ V            D   ++++++ L ++G   EA+++   M    +  + +T 
Sbjct: 171 HVDLALQVLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTY 230

Query: 376 VGVLFACS-----------HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
           V V+  C            HA  ++ G     +   F G        S ++D+ G+ G +
Sbjct: 231 VSVMGLCGQIRDLGLGLQVHAQLLKGGL----TFDVFVG--------SMLVDMFGKCGDV 278

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGA 449
             A K+   +    + V W +L+ A
Sbjct: 279 LSARKVFDGLQ-NRNVVVWTSLMTA 302



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 99/203 (48%), Gaps = 38/203 (18%)

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           + ++I  N+L+++Y KC  L  A  +F  M  + V+S++ ++ G   +G   E +KLF++
Sbjct: 52  EFNIIQLNSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKN 111

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDG-------------WNHF-KS-----MKKFYG 403
           M  S  +PN      VL AC+H+G V +G             ++HF KS       K + 
Sbjct: 112 MVSSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFH 171

Query: 404 IDPG-----REH-----------YSCMIDLLGRAGKLQEAVKLIHEMPYEP---DAVTWR 444
           +D        EH           Y+ +++ L  +G+L EAV+++  M  E    D+VT+ 
Sbjct: 172 VDLALQVLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYV 231

Query: 445 ALLGACKVHRNTDLAICAAKKIL 467
           +++G C   R+  L +    ++L
Sbjct: 232 SVMGLCGQIRDLGLGLQVHAQLL 254


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/577 (37%), Positives = 335/577 (58%), Gaps = 4/577 (0%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R DS T+   +  C     +   + V +     G++ + F+ + LL+++ ++  + +A  
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           +F +MP R+ V+W+TM++ +  A     A+++   M  +GV+ +      V++AC +   
Sbjct: 165 VFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARN 224

Query: 191 LR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           +R    +H  +++ G   DV   ++L+D+YAK G L  A  VF  M  R+ V W+++I G
Sbjct: 225 VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISG 284

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDL 306
           FAQN   DEAL L++ M+ +G   D   L S L AC+ +  L+LG  VH  +++ +D + 
Sbjct: 285 FAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNC 344

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
           IL  A +DMY KCGSL  A  +F+ +  +D+I W+ MI+    +G  Q+AL LF+ M  +
Sbjct: 345 ILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNET 404

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
            ++P++ T   +L A SH+G VE+G   F  M   + I P  +HY C++DLL R+G ++E
Sbjct: 405 GMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEE 464

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           A  L+  M  EP    W ALL  C  ++  +L    A  IL L P D G   L+SN+YA 
Sbjct: 465 ASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAA 524

Query: 487 SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
           ++KWD+V +VRK M+  G  K PGCS IE+    H F + D SHPQ ++I   +  L  +
Sbjct: 525 TKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLE 584

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           +  +GY P T +V  DLE E KE  + YHSE+LAI FGL++   G  + I KNLR+CGDC
Sbjct: 585 MRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDC 644

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           H   K  +K+ ++ IV+RD  R+HHF+DG CSC DYW
Sbjct: 645 HDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 173/356 (48%), Gaps = 23/356 (6%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+  GV+ D V    +I+ C A   V     VH H+L  G   +      L++
Sbjct: 193 AIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVD 252

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K  LL+ A  +F  M  RN VSW+ MIS +     +D+AL L   M   G++P+   
Sbjct: 253 MYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGA 312

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             + L AC ++  L   R +H G I   F+ +  + +A ID+Y+K G L +A+ +FN + 
Sbjct: 313 LVSALLACSNIGFLKLGRSVH-GFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMIS 371

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE---- 290
            RDL++WN++I     +    +AL L++ M   G   D +T  S+L A +   L+E    
Sbjct: 372 DRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKL 431

Query: 291 -LGTQV-HVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS-WSTMISGL 347
             G  V H  +   +   +    L+D+  + G +E+A  + + M  +  ++ W  ++SG 
Sbjct: 432 WFGRMVNHFKITPAEKHYV---CLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGC 488

Query: 348 AQNGYSQEALKLFESM--KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
             N    + L+L ES+   +  ++P+    VGVL   S+       W+  + ++K 
Sbjct: 489 LNN----KKLELGESIADNILELQPDD---VGVLALVSNLYAATKKWDKVRQVRKL 537



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 130/273 (47%), Gaps = 7/273 (2%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF-A 249
           L +LH  +I     S   + S+L   YA+ G+L  AE           +   + I    +
Sbjct: 27  LARLHALLIVSSSASHTLI-SSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAHS 85

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           +      AL +++ +  A    D +T T  L AC  L  L  G  V        Y  D+ 
Sbjct: 86  RRGSPASALRVFRALPPAA-RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVF 144

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + ++LL +Y + G++ DA+ VF RM ++D ++WSTM++G    G   +A++++  M+   
Sbjct: 145 VCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDG 204

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           +K + + ++GV+ AC+ A  V  G +    + + +G+       + ++D+  + G L  A
Sbjct: 205 VKGDEVVMIGVIQACTAARNVRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLLDVA 263

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            ++   M +  D V+W A++     +  +D A+
Sbjct: 264 CRVFGLMVHRND-VSWSAMISGFAQNGQSDEAL 295


>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
 gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/578 (37%), Positives = 338/578 (58%), Gaps = 5/578 (0%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R +      + K C +   +EE K  H   L  G     F+ N L+ M+   S   EA  
Sbjct: 133 RPNEFVATVVFKSCSSSGRIEEGKQFHGCFLKSGLMSHEFVRNTLVYMYSLCSGNGEAIR 192

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           + D +P  ++  +++ +S Y +     +  E+L  M +E +  +  TY + LR C +L  
Sbjct: 193 VLDDLPYCDLSVFSSALSGYLECGAFKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRD 252

Query: 191 L---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L   RQ+H  ++++GF S+V    A+I++Y K G++  A+ VF+    +++V+  +I+  
Sbjct: 253 LNLARQIHSRMVRLGFNSEVEASGAIINMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDA 312

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHD 305
           + Q+   +EALNL+ +M       ++ T    L +   L+LL+ G  +H  VLK  Y + 
Sbjct: 313 YFQDKSFEEALNLFSKMDTKEVPPNEYTFAISLNSIAELSLLKHGDLLHGLVLKSGYRNH 372

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           +++ NAL++MY K GS+EDA   FS M  +D+++W+TMI G + +G  +E L+ F+ M +
Sbjct: 373 VMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMICGFSHHGLGREGLEAFDRMMI 432

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
           +   PN IT +GVL ACSH GFVE G  +F  + K + + P  +HY+C++ LL +AG  +
Sbjct: 433 AGEIPNRITFIGVLQACSHVGFVEQGLYYFNQLMKKFNVQPDLQHYTCIVGLLSKAGMFK 492

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           +A   +   P E D V WRALL AC V RN  L    A+  +   P D G Y+LLSNI+A
Sbjct: 493 DAEDFMRTAPIEWDVVAWRALLNACYVRRNFRLGKKVAEYAIYKYPNDSGVYVLLSNIHA 552

Query: 486 NSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQ 545
            S++W+ VAEVR  M  RG+ KEPG SWI +  Q H F   ++ HP+I  I   +K ++ 
Sbjct: 553 KSREWEGVAEVRSLMNKRGVKKEPGVSWIGIRNQTHVFLAEENQHPEITLIYAKIKEVLS 612

Query: 546 KLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGD 605
           K+  +GY+PD   V  D++ EQ+ED++ YHSEKLA+ +GLM   +   + + KN+RIC D
Sbjct: 613 KIRPLGYSPDVAGVFHDVDEEQREDNLSYHSEKLAVAYGLMKTPENSPLYVTKNVRICDD 672

Query: 606 CHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           CH+  KL +K+  + IVIRD  R+HHF+DG CSC DYW
Sbjct: 673 CHSAIKLISKISKRYIVIRDSNRFHHFRDGQCSCCDYW 710



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 187/382 (48%), Gaps = 19/382 (4%)

Query: 79  ELIKCCLARHAVEEAKLVHNHVL---SGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           EL+K C     +   + +H H++         + + +N L+N++VK      A+ +FD M
Sbjct: 36  ELLKVCANSSYLRTGESIHGHLIVTNQSSRAKDVYQINSLINLYVKCGETVRARKVFDLM 95

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFML-REGVRPNMFTYSAVLRACDSLIIL--- 191
           PERNVVSW  M+  Y ++  + + L+L   M+  +  RPN F  + V ++C S   +   
Sbjct: 96  PERNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDESRPNEFVATVVFKSCSSSGRIEEG 155

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           +Q H   +K G  S  FVR+ L+ +Y+       A  V +++P  DL V++S + G+ + 
Sbjct: 156 KQFHGCFLKSGLMSHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLEC 215

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILN 309
               E   + +RM +     D  T  S LR C+ L  L L  Q+H  +++  ++ ++  +
Sbjct: 216 GAFKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRDLNLARQIHSRMVRLGFNSEVEAS 275

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
            A+++MY KCG +  A  VF     ++++  +T++    Q+   +EAL LF  M    + 
Sbjct: 276 GAIINMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDAYFQDKSFEEALNLFSKMDTKEVP 335

Query: 370 PNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHY---SCMIDLLGRAGKLQ 425
           PN  T    L + +    ++ G   H   +K  Y     R H    + ++++  ++G ++
Sbjct: 336 PNEYTFAISLNSIAELSLLKHGDLLHGLVLKSGY-----RNHVMVGNALVNMYAKSGSIE 390

Query: 426 EAVKLIHEMPYEPDAVTWRALL 447
           +A K    M +  D VTW  ++
Sbjct: 391 DARKAFSGMTFR-DIVTWNTMI 411



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 137/302 (45%), Gaps = 39/302 (12%)

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH-----DLILN 309
           D+  +L  + K+  F  D+  L  +L+ C   + L  G  +H H++  +      D+   
Sbjct: 15  DKLASLVPKPKKPLFPIDR--LNELLKVCANSSYLRTGESIHGHLIVTNQSSRAKDVYQI 72

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS-RI 368
           N+L+++Y KCG    A  VF  M +++V+SW  M+ G   +G+  E LKLF+SM  S   
Sbjct: 73  NSLINLYVKCGETVRARKVFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDES 132

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG--IDPG-------REHYSCMIDLLG 419
           +PN      V  +CS +G +E+G       K+F+G  +  G       R     M  L  
Sbjct: 133 RPNEFVATVVFKSCSSSGRIEEG-------KQFHGCFLKSGLMSHEFVRNTLVYMYSLCS 185

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLG--ACKVHR-NTDLAICAAKKILNLDPQDPGT 476
             G   EA++++ ++PY   +V   AL G   C   +   ++    AK+ L LD     T
Sbjct: 186 GNG---EAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGAEVLRRMAKEDLVLDNI---T 239

Query: 477 YILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVN------KQIHAFNVADSSH 530
           Y+    + +N +  +   ++   M   G   E   S   +N      K ++A  V D++H
Sbjct: 240 YLSCLRLCSNLRDLNLARQIHSRMVRLGFNSEVEASGAIINMYGKCGKVLYAQRVFDNTH 299

Query: 531 PQ 532
            Q
Sbjct: 300 AQ 301



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 88/198 (44%), Gaps = 5/198 (2%)

Query: 53  RDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
           +    A+     M    V  +  T+A  +        ++   L+H  VL  G+     + 
Sbjct: 317 KSFEEALNLFSKMDTKEVPPNEYTFAISLNSIAELSLLKHGDLLHGLVLKSGYRNHVMVG 376

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N L+NM+ K   +E+A+  F  M  R++V+W TMI  +    +  + LE    M+  G  
Sbjct: 377 NALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMICGFSHHGLGREGLEAFDRMMIAGEI 436

Query: 173 PNMFTYSAVLRACDSLIILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
           PN  T+  VL+AC  +  + Q     +  + K   + D+   + ++ + +K G  ++AE 
Sbjct: 437 PNRITFIGVLQACSHVGFVEQGLYYFNQLMKKFNVQPDLQHYTCIVGLLSKAGMFKDAED 496

Query: 229 VFNEMPTR-DLVVWNSII 245
                P   D+V W +++
Sbjct: 497 FMRTAPIEWDVVAWRALL 514


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/552 (39%), Positives = 336/552 (60%), Gaps = 14/552 (2%)

Query: 105 FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
           F  + FL   L+  +     L  A+ +FD+ P +N+  W  ++ A   A   D+AL  L 
Sbjct: 104 FRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLA 163

Query: 165 FMLREGVRPNMFTYSAVLRACDSLII--------LRQLHCGIIKVGFESDVFVRSALIDI 216
            M R GV  + ++Y+  L+AC ++          +R++H   I+ G+     V + LID 
Sbjct: 164 DMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLIDC 223

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM--KRAGFAADQS 274
           YAKLG +R AE VF  MP R++V W+++IG +A+N    +A+ L+K M    A    +  
Sbjct: 224 YAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSI 283

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRM 332
           T+ SVL AC G+  L  G  +H ++L+   D +++  NAL+ MY +CG LE    +F  +
Sbjct: 284 TIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKWI 343

Query: 333 I-QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
             ++DV+SW+++ISG   +G+  EA+++FE M      P+ IT + VL ACSHAG V +G
Sbjct: 344 GHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLVNEG 403

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
              F+SM + YG+ P  EHY+CM+DLLGRAG+L EA++LI  M  EP    W ALLGAC+
Sbjct: 404 KMLFESMVE-YGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGALLGACR 462

Query: 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGC 511
           +H + + A  A   + +L+P++ G Y+LL++IYA ++  ++V  +++ +    + K  GC
Sbjct: 463 IHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLKELLEEHALEKVTGC 522

Query: 512 SWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDS 571
           SWIEV K++H+F   D+ +P ++++   +   + ++   GY PDT  VL D+EGE+KE  
Sbjct: 523 SWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVPDTGIVLYDIEGEEKERI 582

Query: 572 IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHH 631
           +  HSEKLA+ FGL++   G+ IRI KNLR+C DCH+  K  +K   + IV+RD  R+HH
Sbjct: 583 LIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTEREIVVRDVNRFHH 642

Query: 632 FQDGNCSCGDYW 643
           F+DG CSCGDYW
Sbjct: 643 FRDGVCSCGDYW 654



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 96/192 (50%), Gaps = 9/192 (4%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           +S+T   ++  C   +A+   KL+H ++L  GF+    ++N L+ M+++   LE  + +F
Sbjct: 281 NSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIF 340

Query: 133 DQMP-ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL 191
             +   R+VVSW ++IS Y       +A+++   M+  G  P++ T+ +VL AC    ++
Sbjct: 341 KWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLV 400

Query: 192 ---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM---PTRDLVVWNSII 245
              + L   +++ G        + ++D+  + G+L  A  +   M   P+    VW +++
Sbjct: 401 NEGKMLFESMVEYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQ--VWGALL 458

Query: 246 GGFAQNSDVDEA 257
           G    +  V+ A
Sbjct: 459 GACRIHGHVEYA 470


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/584 (38%), Positives = 338/584 (57%), Gaps = 6/584 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ   V  +  T+  ++K C         K +H      GF    F+ N L++M+ KF  
Sbjct: 76  MQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQ 135

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +  A+++FD++ +R VVSWT++IS Y       +AL +   M +  V+P+     +V+ A
Sbjct: 136 ISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTA 195

Query: 185 CDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
             ++  L Q   +H  + K+G E +  +  +L  +YAK G +  A   FN M   +L++W
Sbjct: 196 YTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILW 255

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N++I G+A N   +EA+ L++ M       D  T+ S + A   +  LEL   +  ++ K
Sbjct: 256 NAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISK 315

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
             Y  D  +N  L+DMY KCGS+  A  VF R+  KDV+ WS MI G   +G+ QEA+ L
Sbjct: 316 SEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICL 375

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           +  MK + + PN  T +G+L AC ++G V++GW  F  M   +GI+P  +HYSC++DLLG
Sbjct: 376 YNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPD-HGIEPHHQHYSCVVDLLG 434

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           RAG L +A   I  MP +P    W ALL ACK+HR   L   AA+++  LDP + G Y+ 
Sbjct: 435 RAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQ 494

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LSN+YA++  W  VA VR  M  +G+ K+ G S IE+N  +  F V D SHP+  +I + 
Sbjct: 495 LSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEE 554

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
           L  L ++L   GY P    VL DL  E+ E+++ +HSE+LA+ +G++S   G T+RI KN
Sbjct: 555 LDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKN 614

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           LR C +CH+  KL +K+ ++ I+IRD  R+HHF+DG CSCGD+W
Sbjct: 615 LRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 130/428 (30%), Positives = 213/428 (49%), Gaps = 26/428 (6%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           V+  ++  G     FL+   +N  + F  +  A   F ++ E +++ W  +I  Y    +
Sbjct: 6   VYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNI 65

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSA 212
            D  + + + M    V PN FT+  VL+AC       I +Q+H    K GF S+VFV+++
Sbjct: 66  VDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNS 125

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           L+ +YAK G++  A  VF+++  R +V W SII G+ QN D  EALN++K M++     D
Sbjct: 126 LVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPD 185

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHV----LKYDHDLILNNALLDMYCKCGSLEDAMSV 328
              L SV+ A T +  L  G  +H  V    L+++ D+++  +L  MY K G +E A   
Sbjct: 186 WIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVI--SLTTMYAKRGLVEVARFF 243

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           F+RM + ++I W+ MISG A NGY +EA+KLF  M    I+ + IT+   + A +  G +
Sbjct: 244 FNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSL 303

Query: 389 E-----DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
           E     DG+      +    ++ G      +ID+  + G +  A + + +   + D V W
Sbjct: 304 ELARWLDGYISKSEYRDDTFVNTG------LIDMYAKCGSIYLA-RCVFDRVADKDVVLW 356

Query: 444 RALLGACKVHRNTDLAICAAKKI--LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
             ++    +H +   AIC   ++    + P D GT+I L     NS    E  E+   M 
Sbjct: 357 SVMIMGYGLHGHGQEAICLYNEMKQAGVCPND-GTFIGLLTACKNSGLVKEGWELFHLMP 415

Query: 502 ARGITKEP 509
             GI  EP
Sbjct: 416 DHGI--EP 421



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 149/300 (49%), Gaps = 10/300 (3%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D   A+     M+   V+ D +    ++        + + K +H  V   G E E  +V 
Sbjct: 166 DPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVI 225

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L  M+ K  L+E A+  F++M + N++ W  MIS Y +    ++A++L   M+ + +R 
Sbjct: 226 SLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRV 285

Query: 174 NMFTY-SAVLRACD--SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +  T  SAVL +    SL + R L   I K  +  D FV + LID+YAK G +  A CVF
Sbjct: 286 DSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVF 345

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           + +  +D+V+W+ +I G+  +    EA+ LY  MK+AG   +  T   +L AC    L++
Sbjct: 346 DRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVK 405

Query: 291 LGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMS-VFSRMIQKDVISWSTMIS 345
            G ++  H++  DH +  +    + ++D+  + G L  A   + S  I+  V  W  ++S
Sbjct: 406 EGWEL-FHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLS 463



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 134/261 (51%), Gaps = 4/261 (1%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           L Q++  +I  G     F+    I+     G++  A   F E+   D+++WN+II G+ Q
Sbjct: 3   LDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQ 62

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLIL 308
            + VD  + +Y  M+ +    +  T   VL+AC G ++  +G Q+H    KY    ++ +
Sbjct: 63  KNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFV 122

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            N+L+ MY K G +  A  VF ++  + V+SW+++ISG  QNG   EAL +F+ M+   +
Sbjct: 123 QNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNV 182

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
           KP++I +V V+ A ++   +  G +    + K  G++   +    +  +  + G ++ A 
Sbjct: 183 KPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKL-GLEFEPDIVISLTTMYAKRGLVEVAR 241

Query: 429 KLIHEMPYEPDAVTWRALLGA 449
              + M  +P+ + W A++  
Sbjct: 242 FFFNRME-KPNLILWNAMISG 261



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 103/228 (45%), Gaps = 30/228 (13%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+K    M    +R DS+T    +       ++E A+ +  ++    +  +TF+   L++
Sbjct: 271 AIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLID 330

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +  A+ +FD++ +++VV W+ MI  Y       +A+ L   M + GV PN  T
Sbjct: 331 MYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGT 390

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFE-----SDVFVR------SALIDIYAKLGELRNA 226
           +  +L AC +         G++K G+E      D  +       S ++D+  + G L  A
Sbjct: 391 FIGLLTACKN--------SGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQA 442

Query: 227 ECVFNEMPTRDLV-VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
                 MP +  V VW +++           A  ++++++    AA+Q
Sbjct: 443 YDFIMSMPIKPGVSVWGALL----------SACKIHRKVRLGEIAAEQ 480


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/586 (36%), Positives = 352/586 (60%), Gaps = 19/586 (3%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           T    +  CLA   V+  K VH + +  G E  T + N L +++ K   L+ A   F ++
Sbjct: 181 TLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRI 240

Query: 136 PERNVVSWTTMISAYC-DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL--- 191
           PE+NV++WTTMISA   D +  +  L L I ML +GV PN FT ++V+  C + + L   
Sbjct: 241 PEKNVITWTTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLG 300

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           +Q+     K+G E+++ V+++ + +Y + GE   A  +F +M    ++ WN++I G+AQ 
Sbjct: 301 KQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQI 360

Query: 252 SDVD-----------EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
            D             +AL +++ +KR+    D  T +S+L  C+ +  LE G Q+H   +
Sbjct: 361 MDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTI 420

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K  +  D+++N+AL++MY KCG ++DA   F  M  +  ++W++MISG +Q+G  QEA++
Sbjct: 421 KSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQ 480

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
           LFE M+++ ++PN IT V +L ACS+AG VE+  ++F  MKK Y I+P  +HY CMID+ 
Sbjct: 481 LFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMF 540

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
            R G++++A   I    +EP+   W +L+  C+ H N +LA  AA K+L L P+   TYI
Sbjct: 541 VRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYI 600

Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
           LL N+Y ++++W +VA VRK M+   +      SWI +  +++ F   D +HPQ  ++ +
Sbjct: 601 LLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQ 660

Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKE--DSIQYHSEKLAIVFGLMSLTQGKTIRI 596
            L++L++K   +GY P  N  L D E ++K    S+++HSE+LA+  GL+    G T+R+
Sbjct: 661 LLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVRV 720

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
            KN+ +C DCH+  KL + +EN+ I++RD  R H F+DG CSCGD+
Sbjct: 721 TKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 766



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 207/416 (49%), Gaps = 25/416 (6%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   G    S  Y  L+  C+   ++  A+ VH H+   G   + F+   L+N +++   
Sbjct: 69  MLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGA 128

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
             +A+ LFD MPERNVV+WT +++ Y         LE+ + ML  G  P+ +T  A L A
Sbjct: 129 ARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNA 188

Query: 185 CDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C +   + + +Q+H   IK G ES   + ++L  +YAKLG L +A   F  +P ++++ W
Sbjct: 189 CLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITW 248

Query: 242 NSIIGGFAQNSD-VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
            ++I   A++ + V+  L+L+  M   G   ++ TLTSV+  C     L LG QV     
Sbjct: 249 TTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSF 308

Query: 301 KY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ--------- 349
           K   + +L + N+ + +Y + G  ++AM +F +M    +I+W+ MISG AQ         
Sbjct: 309 KIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDL 368

Query: 350 ----NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGI 404
                G+  +AL +F  +K S +KP+  T   +L  CS    +E G   H +++K  +  
Sbjct: 369 QARSRGF--QALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLS 426

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           D      S ++++  + G +Q+A K   EMP     VTW +++     H     AI
Sbjct: 427 DVVVN--SALVNMYNKCGCIQDANKAFLEMPTRT-FVTWTSMISGYSQHGQPQEAI 479



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 132/291 (45%), Gaps = 51/291 (17%)

Query: 53  RDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
           RDL R++          ++ D  T++ ++  C A  A+E+ + +H   +  GF  +  + 
Sbjct: 382 RDLKRSV----------MKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVN 431

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           + L+NM+ K   +++A   F +MP R  V+WT+MIS Y       +A++L   M   GVR
Sbjct: 432 SALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVR 491

Query: 173 PNMFTYSAVLRACD--SLIILRQLHCGIIKVGF--ESDVFVRSALIDIYAKLGELRNAEC 228
           PN  T+ ++L AC    L+   + +  ++K  +  E  V     +ID++ +LG + +A  
Sbjct: 492 PNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFS 551

Query: 229 VFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
                    +  +W+S++ G   + +          M+ A +AAD+              
Sbjct: 552 FIKRTGFEPNEAIWSSLVAGCRSHGN----------MELAFYAADK-------------- 587

Query: 288 LLELGTQ-VHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
           LLEL  + +  ++L           LL+MY      +D   V   M Q+DV
Sbjct: 588 LLELKPKGIETYIL-----------LLNMYISTERWQDVARVRKLMKQEDV 627


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/584 (38%), Positives = 338/584 (57%), Gaps = 6/584 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ   V  +  T+  ++K C         K +H      GF    F+ N L++M+ KF  
Sbjct: 91  MQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQ 150

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +  A+++FD++ +R VVSWT++IS Y       +AL +   M +  V+P+     +V+ A
Sbjct: 151 ISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTA 210

Query: 185 CDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
             ++  L Q   +H  + K+G E +  +  +L  +YAK G +  A   FN M   +L++W
Sbjct: 211 YTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILW 270

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N++I G+A N   +EA+ L++ M       D  T+ S + A   +  LEL   +  ++ K
Sbjct: 271 NAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISK 330

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
             Y  D  +N  L+DMY KCGS+  A  VF R+  KDV+ WS MI G   +G+ QEA+ L
Sbjct: 331 SEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICL 390

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           +  MK + + PN  T +G+L AC ++G V++GW  F  M   +GI+P  +HYSC++DLLG
Sbjct: 391 YNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPD-HGIEPHHQHYSCVVDLLG 449

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           RAG L +A   I  MP +P    W ALL ACK+HR   L   AA+++  LDP + G Y+ 
Sbjct: 450 RAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQ 509

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LSN+YA++  W  VA VR  M  +G+ K+ G S IE+N  +  F V D SHP+  +I + 
Sbjct: 510 LSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEE 569

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
           L  L ++L   GY P    VL DL  E+ E+++ +HSE+LA+ +G++S   G T+RI KN
Sbjct: 570 LDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKN 629

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           LR C +CH+  KL +K+ ++ I+IRD  R+HHF+DG CSCGD+W
Sbjct: 630 LRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 130/428 (30%), Positives = 213/428 (49%), Gaps = 26/428 (6%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           V+  ++  G     FL+   +N  + F  +  A   F ++ E +++ W  +I  Y    +
Sbjct: 21  VYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNI 80

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSA 212
            D  + + + M    V PN FT+  VL+AC       I +Q+H    K GF S+VFV+++
Sbjct: 81  VDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNS 140

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           L+ +YAK G++  A  VF+++  R +V W SII G+ QN D  EALN++K M++     D
Sbjct: 141 LVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPD 200

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHV----LKYDHDLILNNALLDMYCKCGSLEDAMSV 328
              L SV+ A T +  L  G  +H  V    L+++ D+++  +L  MY K G +E A   
Sbjct: 201 WIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVI--SLTTMYAKRGLVEVARFF 258

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           F+RM + ++I W+ MISG A NGY +EA+KLF  M    I+ + IT+   + A +  G +
Sbjct: 259 FNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSL 318

Query: 389 E-----DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
           E     DG+      +    ++ G      +ID+  + G +  A + + +   + D V W
Sbjct: 319 ELARWLDGYISKSEYRDDTFVNTG------LIDMYAKCGSIYLA-RCVFDRVADKDVVLW 371

Query: 444 RALLGACKVHRNTDLAICAAKKI--LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
             ++    +H +   AIC   ++    + P D GT+I L     NS    E  E+   M 
Sbjct: 372 SVMIMGYGLHGHGQEAICLYNEMKQAGVCPND-GTFIGLLTACKNSGLVKEGWELFHLMP 430

Query: 502 ARGITKEP 509
             GI  EP
Sbjct: 431 DHGI--EP 436



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 149/300 (49%), Gaps = 10/300 (3%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D   A+     M+   V+ D +    ++        + + K +H  V   G E E  +V 
Sbjct: 181 DPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVI 240

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L  M+ K  L+E A+  F++M + N++ W  MIS Y +    ++A++L   M+ + +R 
Sbjct: 241 SLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRV 300

Query: 174 NMFTY-SAVLRACD--SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +  T  SAVL +    SL + R L   I K  +  D FV + LID+YAK G +  A CVF
Sbjct: 301 DSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVF 360

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           + +  +D+V+W+ +I G+  +    EA+ LY  MK+AG   +  T   +L AC    L++
Sbjct: 361 DRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVK 420

Query: 291 LGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMS-VFSRMIQKDVISWSTMIS 345
            G ++  H++  DH +  +    + ++D+  + G L  A   + S  I+  V  W  ++S
Sbjct: 421 EGWEL-FHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLS 478



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 134/261 (51%), Gaps = 4/261 (1%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           L Q++  +I  G     F+    I+     G++  A   F E+   D+++WN+II G+ Q
Sbjct: 18  LDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQ 77

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLIL 308
            + VD  + +Y  M+ +    +  T   VL+AC G ++  +G Q+H    KY    ++ +
Sbjct: 78  KNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFV 137

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            N+L+ MY K G +  A  VF ++  + V+SW+++ISG  QNG   EAL +F+ M+   +
Sbjct: 138 QNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNV 197

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
           KP++I +V V+ A ++   +  G +    + K  G++   +    +  +  + G ++ A 
Sbjct: 198 KPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKL-GLEFEPDIVISLTTMYAKRGLVEVAR 256

Query: 429 KLIHEMPYEPDAVTWRALLGA 449
              + M  +P+ + W A++  
Sbjct: 257 FFFNRME-KPNLILWNAMISG 276



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 103/229 (44%), Gaps = 30/229 (13%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A+K    M    +R DS+T    +       ++E A+ +  ++    +  +TF+   L+
Sbjct: 285 EAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLI 344

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   +  A+ +FD++ +++VV W+ MI  Y       +A+ L   M + GV PN  
Sbjct: 345 DMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDG 404

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFE-----SDVFVR------SALIDIYAKLGELRN 225
           T+  +L AC +         G++K G+E      D  +       S ++D+  + G L  
Sbjct: 405 TFIGLLTACKN--------SGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQ 456

Query: 226 AECVFNEMPTRDLV-VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           A      MP +  V VW +++           A  ++++++    AA+Q
Sbjct: 457 AYDFIMSMPIKPGVSVWGALL----------SACKIHRKVRLGEIAAEQ 495


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/597 (36%), Positives = 345/597 (57%), Gaps = 11/597 (1%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           + PRA++ +  M       + VT+   +  C   + +E  K+VH  V+  G      + N
Sbjct: 342 NYPRALELLIEMLQTRKATNYVTFTTALSAC---YNLETLKIVHAFVILLGLHHNLIIGN 398

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L+ M+ KF  +  AQ +   MP+R+ V+W  +I  + D K  + A+E    +  EGV  
Sbjct: 399 ALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPV 458

Query: 174 NMFT----YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           N  T     SA L   D L     +H  I+  GFE + FV+S+LI +YA+ G+L  +  +
Sbjct: 459 NYITIVNLLSAFLSPDDLLDHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYI 518

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F+ +  ++   WN+I+   A     +EAL L  +M+  G   DQ + +        L LL
Sbjct: 519 FDVLANKNSSTWNAILSANAHYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLL 578

Query: 290 ELGTQVHVHVLKY---DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           + G Q+H  ++K+    +D +LN A +DMY KCG ++D   +  +   +   SW+ +IS 
Sbjct: 579 DEGQQLHSLIIKHGFESNDYVLN-ATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISA 637

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
           LA++G+ Q+A + F  M    ++P+++T V +L ACSH G V++G  +F SM   +G+  
Sbjct: 638 LARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVPT 697

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
           G EH  C+IDLLGRAGKL EA   I++MP  P  + WR+LL ACK+H N +LA  AA ++
Sbjct: 698 GIEHCVCIIDLLGRAGKLTEAENFINKMPVPPTDLVWRSLLAACKIHGNLELARKAADRL 757

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
             LD  D   Y+L SN+ A++++W +V  VRK M +  I K+P CSW+++  Q+  F + 
Sbjct: 758 FELDSSDDSAYVLYSNVCASTRRWRDVENVRKQMESHNIKKKPACSWVKLKNQVTTFGMG 817

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D  HPQ  +I   L+ L + +   GY PDT+Y LQD + EQKE ++  HSE++A+ FGL+
Sbjct: 818 DQYHPQNAEIYAKLEELKKIIREAGYMPDTSYSLQDTDEEQKEHNLWNHSERIALAFGLI 877

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + ++G  +RI KNLR+CGDCH+  K+ +++  + I++RD  R+HHF  G CSC DYW
Sbjct: 878 NSSEGSPLRIFKNLRVCGDCHSVFKMVSQIIGRKIILRDAYRFHHFSSGKCSCSDYW 934



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 190/344 (55%), Gaps = 20/344 (5%)

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ KF  +E AQ +FD+MPERN  SW  ++S +       KA++    ML  GVRP+ + 
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 178 YSAVLRACDSLIILR----QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
            ++++ ACD    +     Q+H  +IK G   DVFV ++L+  Y   G +   + VF E+
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
              ++V W S++ G+A N  V E +++Y+R++R G   +++ + +V+R+C  L    LG 
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGY 180

Query: 294 QVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           QV   V+K   D  ++  N+L+ M+  C S+E+A  VF  M ++D ISW+++I+    NG
Sbjct: 181 QVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNG 240

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG--IDPGRE 409
           + +++L+ F  M+ +  K +YITI  +L  C  A  +  G       +  +G  +  G E
Sbjct: 241 HCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWG-------RGLHGMVVKSGLE 293

Query: 410 HYSC----MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
              C    ++ +  +AGK ++A  + H+M  E D ++W +++ +
Sbjct: 294 SNVCVCNSLLSMYSQAGKSEDAEFVFHKMR-ERDLISWNSMMAS 336



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/464 (28%), Positives = 226/464 (48%), Gaps = 35/464 (7%)

Query: 37  RNSSS---LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEA 93
           RN +S   L+  F R  + +   +AM+    M  HGVR  S   A L+  C     + E 
Sbjct: 21  RNEASWNNLMSGFVRVGWYQ---KAMQFFCHMLEHGVRPSSYVAASLVTACDRSGCMTEG 77

Query: 94  KL-VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
              VH HV+  G   + F+   LL+ +  F  + E  ++F ++ E N+VSWT+++  Y  
Sbjct: 78  AFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMVGYAY 137

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFV 209
                + + +   + R+GV  N    + V+R+C  L+   +  Q+   +IK G ++ V V
Sbjct: 138 NGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVIKSGLDTTVSV 197

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
            ++LI ++     +  A CVF++M  RD + WNSII     N   +++L  + +M+    
Sbjct: 198 ANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHA 257

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMS 327
             D  T++++L  C     L  G  +H  V+K   + ++ + N+LL MY + G  EDA  
Sbjct: 258 KTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEF 317

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           VF +M ++D+ISW++M++    NG    AL+L   M  +R   NY+T    L AC     
Sbjct: 318 VFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACY---- 373

Query: 388 VEDGWNHFKSMKKFYG--IDPGREHY----SCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
                 + +++K  +   I  G  H     + ++ + G+ G +  A ++   MP + D V
Sbjct: 374 ------NLETLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMP-DRDEV 426

Query: 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQD--PGTYILLSNI 483
           TW AL+G    ++  + AI A     NL  ++  P  YI + N+
Sbjct: 427 TWNALIGGHADNKEPNAAIEA----FNLLREEGVPVNYITIVNL 466



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 213/430 (49%), Gaps = 36/430 (8%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           ++++    M+    + D +T + L+  C +   +   + +H  V+  G E    + N LL
Sbjct: 244 KSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLL 303

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ +    E+A+ +F +M ER+++SW +M++++ D     +ALELLI ML+     N  
Sbjct: 304 SMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYV 363

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           T++  L AC +L  L+ +H  +I +G   ++ + +AL+ +Y K G +  A+ V   MP R
Sbjct: 364 TFTTALSACYNLETLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDR 423

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA-CTGLALLELGTQV 295
           D V WN++IGG A N + + A+  +  ++  G   +  T+ ++L A  +   LL+ G  +
Sbjct: 424 DEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPI 483

Query: 296 HVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H H++   ++ +  + ++L+ MY +CG L  +  +F  +  K+  +W+ ++S  A  G  
Sbjct: 484 HAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPG 543

Query: 354 QEALKLFESMKVSRIKPNYIT------IVGVLFACS-----HAGFVEDGWNH----FKSM 398
           +EALKL   M+   I  +  +      I+G L         H+  ++ G+        + 
Sbjct: 544 EEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNAT 603

Query: 399 KKFYG----IDP-----------GREHYSCMIDLLGRAGKLQEAVKLIHEM---PYEPDA 440
              YG    ID             +  ++ +I  L R G  Q+A +  HEM      PD 
Sbjct: 604 MDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDH 663

Query: 441 VTWRALLGAC 450
           VT+ +LL AC
Sbjct: 664 VTFVSLLSAC 673


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 346/600 (57%), Gaps = 47/600 (7%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNM-----HVKFSLLEEAQVLFDQMPERNVVSW 143
           ++ +AK VH  +     +  ++++  LL +     HV   L    ++LF Q+   N  +W
Sbjct: 20  SLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVP--LHSYPRLLFSQLHTPNPFAW 77

Query: 144 TTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIK 200
           T +I AY       +AL     M +  V P  FT+SA+  AC ++    +  QLH   + 
Sbjct: 78  TALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTLL 137

Query: 201 VG-FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD---------------------- 237
           +G F SD++V +A+ID+Y K G LR A  VF+EMP RD                      
Sbjct: 138 LGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARD 197

Query: 238 ---------LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
                    +V W +++ G+AQN+   +AL +++R++  G   D+ TL  V+ AC  L  
Sbjct: 198 LFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGA 257

Query: 289 LELGTQV----HVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
            +    +             ++++ +AL+DMY KCG++E+A  VF  M +++V S+S+MI
Sbjct: 258 SKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMI 317

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI 404
            G A +G ++ A+KLF  M  + +KPN++T VGVL ACSHAG V+ G   F SM+K YG+
Sbjct: 318 VGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGV 377

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAK 464
            P  E Y+CM DLL RAG L++A++L+  MP E D   W ALLGA  VH N D+A  A+K
Sbjct: 378 APTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASK 437

Query: 465 KILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEV-NKQIHAF 523
           ++  L+P + G Y+LLSN YA++ +WD+V++VRK +R + + K PG SW+E  N  IH F
Sbjct: 438 RLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIHKF 497

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
              D SHP+I++I K L  L+++L G+GY P+ + +   +   +K   +  HSEKLA+ F
Sbjct: 498 VAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREKRLLLMAHSEKLALAF 557

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GL+S   G TI+I KNLRIC DCH      +K+  + IV+RD  R+HHF +G CSC ++W
Sbjct: 558 GLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFLNGACSCSNFW 617



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 151/341 (44%), Gaps = 45/341 (13%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLA-RHAVEEAKLVHNHVLSGGFEP 107
           +  +  L +A+    +M+   V   S T++ L   C A RH+   A+L    +L GGF  
Sbjct: 84  YALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTLLLGGFSS 143

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVS------------------------- 142
           + ++ N +++M+VK   L  A+++FD+MPER+V+S                         
Sbjct: 144 DLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLP 203

Query: 143 ------WTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHC 196
                 WT M++ Y    M   ALE+   +  EGV  +  T   V+ AC  L   +  + 
Sbjct: 204 VKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASK--YA 261

Query: 197 GIIK-------VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
             I+        G   +V V SALID+Y+K G +  A  VF  M  R++  ++S+I GFA
Sbjct: 262 NWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFA 321

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHDL 306
            +     A+ L+  M   G   +  T   VL AC+   L++ G Q+   + K        
Sbjct: 322 IHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTA 381

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
            L   + D+  + G LE A+ +   M ++ D   W  ++  
Sbjct: 382 ELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGA 422



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 143/318 (44%), Gaps = 39/318 (12%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL---RNAECVFNEMPTRD 237
           +L  C SL   +++H  I     +   +V + L+ +   L  +        +F+++ T +
Sbjct: 14  ILERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPN 73

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
              W ++I  +A    + +AL+ Y  M++   +    T +++  AC  +    LG Q+H 
Sbjct: 74  PFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHA 133

Query: 298 HVL---KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS--------------- 339
             L    +  DL +NNA++DMY KCGSL  A  VF  M ++DVIS               
Sbjct: 134 QTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMR 193

Query: 340 ----------------WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
                           W+ M++G AQN    +AL++F  ++   ++ + +T+VGV+ AC+
Sbjct: 194 AARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACA 253

Query: 384 HAGFVE-DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
             G  +   W    +    +G+       S +ID+  + G ++EA  +   M  E +  +
Sbjct: 254 QLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGM-RERNVFS 312

Query: 443 WRALLGACKVHRNTDLAI 460
           + +++    +H     AI
Sbjct: 313 YSSMIVGFAIHGRARAAI 330


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/580 (35%), Positives = 346/580 (59%), Gaps = 6/580 (1%)

Query: 65   MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
            M   G   DS T   ++  C   H     ++VH + +  G   ET L N LL+M+   S 
Sbjct: 502  MWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSD 561

Query: 125  LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
                  +F  M ++NVVSWT MI++Y  A + DK   LL  M+ +G++P++F  ++VL  
Sbjct: 562  WHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHG 621

Query: 185  C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
                +SL   + +H   I+ G E  + V +AL+++Y     +  A  VF+ +  +D++ W
Sbjct: 622  FAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISW 681

Query: 242  NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            N++IGG+++N+  +E+ +L+  M    F  +  T+T +L A   ++ LE G ++H + L+
Sbjct: 682  NTLIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALR 740

Query: 302  --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
              +  D   +NAL+DMY KCG+L  A  +F R+ +K++ISW+ MI+G   +G  ++A+ L
Sbjct: 741  RGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVAL 800

Query: 360  FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
            FE M+ S ++P+  +   +L+AC H+G   +GW  F +M+K Y I+P  +HY+C++DLL 
Sbjct: 801  FEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLS 860

Query: 420  RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
              G L+EA + I  MP EPD+  W +LL  C++HR+  LA   A ++  L+P++ G Y+L
Sbjct: 861  HTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVL 920

Query: 480  LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
            L+NIYA +++W+ V +++  +  RG+ +  GCSWIEV  ++H F   + +HP+ ++I + 
Sbjct: 921  LANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEF 980

Query: 540  LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
            L H+ +++   G+ P   Y L        ++++  HS KLA+ FG++ L +G+ IR+ KN
Sbjct: 981  LDHVARRMREEGHDPKKKYSLMGANDAVHDEALCGHSSKLAVTFGVLHLPEGRPIRVTKN 1040

Query: 600  LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
             ++C  CH  AK  +KM N+ I++RD  R+HHF+ G CSC
Sbjct: 1041 SKVCSHCHEAAKFISKMCNREIILRDSSRFHHFEGGRCSC 1080



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 187/352 (53%), Gaps = 17/352 (4%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D    +     MQC GV  D+   + ++KC  +  ++ E +++H  +   G      + N
Sbjct: 178 DFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVAN 237

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L+ ++ +   +E+A  +FD M  R+ +SW + IS Y     +D+A++L   M  EG   
Sbjct: 238 ALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEI 297

Query: 174 NMFTYSAVLRACDSL---IILRQLHCGIIKVG----FES-----DVFVRSALIDIYAKLG 221
           +  T  +VL AC  L   ++ + +H   +K G     ES     D  + S L+ +Y K G
Sbjct: 298 SSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCG 357

Query: 222 ELRNAECVFNEMPTRDLV-VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           ++ +A  VF+ MP++  V VWN I+GG+A+ ++ +E+L L+++M   G   D+  L+ +L
Sbjct: 358 DMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLL 417

Query: 281 RACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
           +  T L+    G   H +++K  +     + NAL+  Y K   +++A+ VF RM  +D I
Sbjct: 418 KCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTI 477

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC--SHAGFV 388
           SW+++ISG   NG + EA++LF  M +   + +  T++ VL AC  SH  FV
Sbjct: 478 SWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFV 529



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 187/414 (45%), Gaps = 29/414 (7%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGG--FEPETFLVNI 114
           RA+     M   G    SVT   ++  C         K+VH + +  G  ++ E+    I
Sbjct: 282 RAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGI 341

Query: 115 -------LLNMHVKFSLLEEAQVLFDQMPER-NVVSWTTMISAYCDAKMNDKALELLIFM 166
                  L+ M+VK   +  A+ +FD MP + NV  W  ++  Y  A   +++L L   M
Sbjct: 342 DEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQM 401

Query: 167 LREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
              G+ P+    S +L+    L   R     H  ++K+GF +   V +ALI  YAK   +
Sbjct: 402 HELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMI 461

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
            NA  VF+ MP +D + WNS+I G   N    EA+ L+ RM   G   D +TL SVL AC
Sbjct: 462 DNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPAC 521

Query: 284 TGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
                  +G  VH + +K     +  L NALLDMY  C        +F  M QK+V+SW+
Sbjct: 522 ARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWT 581

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
            MI+   + G   +   L + M +  IKP+   +  VL      GF  D     K  K  
Sbjct: 582 AMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLH-----GFAGD--ESLKQGKSV 634

Query: 402 YG--IDPGREHY----SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           +G  I  G E      + ++++      ++EA +L+ +     D ++W  L+G 
Sbjct: 635 HGYAIRNGMEKLLPVANALMEMYVNCRNMEEA-RLVFDHVTNKDIISWNTLIGG 687



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 120/428 (28%), Positives = 203/428 (47%), Gaps = 38/428 (8%)

Query: 48  RFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSG-GFE 106
           R C   DL  A++ + +    GVR    +Y  +++ C    ++E A+  H  V +G G  
Sbjct: 72  RLCQAGDLAAALRLLGSDGGVGVR----SYCAVVQLCGEERSLEAARRAHALVRAGTGGI 127

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPER--NVVSWTTMISAYCDAKMNDKALELLI 164
             + L   L+  ++K   L  A+++FD+MP R  +V  WT+++SAY  A    + + L  
Sbjct: 128 IGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFR 187

Query: 165 FMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLG 221
            M   GV P+    S VL+   SL  + +   +H  + K+G      V +ALI +Y++ G
Sbjct: 188 QMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCG 247

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
            + +A  VF+ M  RD + WNS I G+  N   D A++L+ +M   G      T+ SVL 
Sbjct: 248 CMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLP 307

Query: 282 ACTGLALLELGTQVHVHVLK----YDHDLI-------LNNALLDMYCKCGSLEDAMSVFS 330
           AC  L    +G  VH + +K    +D + +       L + L+ MY KCG +  A  VF 
Sbjct: 308 ACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFD 367

Query: 331 RMIQK-DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL-----FACSH 384
            M  K +V  W+ ++ G A+    +E+L LFE M    I P+   +  +L      +C+ 
Sbjct: 368 AMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCAR 427

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSC--MIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
            G V  G+           +  G +   C  +I    ++  +  AV +   MP++ D ++
Sbjct: 428 DGLVAHGY--------LVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQ-DTIS 478

Query: 443 WRALLGAC 450
           W +++  C
Sbjct: 479 WNSVISGC 486



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 153/322 (47%), Gaps = 26/322 (8%)

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGF 203
           I   C A     AL LL      GVR    +Y AV++ C    SL   R+ H  +++ G 
Sbjct: 70  IQRLCQAGDLAAALRLLGSDGGVGVR----SYCAVVQLCGEERSLEAARRAH-ALVRAGT 124

Query: 204 ESDV--FVRSALIDIYAKLGELRNAECVFNEMPTR--DLVVWNSIIGGFAQNSDVDEALN 259
              +   +   L+  Y K G+L  A  VF+EMP R  D+ VW S++  +A+  D  E ++
Sbjct: 125 GGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVS 184

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYC 317
           L+++M+  G + D   ++ VL+    L  +  G  +H  +  L       + NAL+ +Y 
Sbjct: 185 LFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYS 244

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           +CG +EDAM VF  M  +D ISW++ ISG   NG+   A+ LF  M     + + +T++ 
Sbjct: 245 RCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLS 304

Query: 378 VLFACSHAGFVEDG-WNHFKSMKKFY---------GIDPGREHYSCMIDLLGRAGKLQEA 427
           VL AC+  GF   G   H  SMK            GID      S ++ +  + G +  A
Sbjct: 305 VLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALG--SKLVFMYVKCGDMGSA 362

Query: 428 VKLIHEMPYEPDAVTWRALLGA 449
            ++   MP + +   W  ++G 
Sbjct: 363 RRVFDAMPSKGNVHVWNLIMGG 384


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/593 (38%), Positives = 346/593 (58%), Gaps = 43/593 (7%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M   G   D+ TY  ++K C     +     +H  V+  G +   ++ N L++
Sbjct: 121 ALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVS 180

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L+ A+ + D+MP R++VSW +M++ Y      + AL+L   M    ++P+  T
Sbjct: 181 MYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGT 240

Query: 178 YSAVLRA-----CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
             ++L A     CD+++ ++                      D++ KL E          
Sbjct: 241 MGSLLPAVTNTSCDNVLYVK----------------------DMFVKLKE---------- 268

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
              + L+ WN +I  +  N+  +EA++LY +M+  G   D  +++SVL AC  L+   LG
Sbjct: 269 ---KSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLG 325

Query: 293 TQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
            ++H +V   K   +L+L NAL+DMY KCG L++A +VF +M+ +DV+SW++MIS    +
Sbjct: 326 RRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMS 385

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
           G  ++A+ LF+ M+ S   P++I  V VL ACSHAG V++G   F  M + YGI PG EH
Sbjct: 386 GQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMAE-YGITPGIEH 444

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
           Y+CM+DLLGRAGK+ EA  L  +MP EP+   W +LL AC+V+ + ++A+ AA  +  L 
Sbjct: 445 YNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLA 504

Query: 471 PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSH 530
           P+  G Y+LLSNIYA + +W +V  VR  M ++GI K PG S +E+N  ++ F   D SH
Sbjct: 505 PEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSH 564

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
            Q  +I K L  L+ ++  +GY P+T+  L D+E E KE  +  HSEKLAIVF +++   
Sbjct: 565 TQSKEIYKALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKP 624

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           G TIRI KN+R+CGDCH   KL +K+  + I+IRD  R+HHF+DG CSCGDYW
Sbjct: 625 GSTIRITKNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 167/341 (48%), Gaps = 40/341 (11%)

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---S 187
           +FD++ ++NVV +  MI +Y +  +   AL +   M  +G  P+ +TY  VL+AC    +
Sbjct: 93  IFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGN 152

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L +  Q+H  ++K+G + ++++ + L+ +Y K   L  A  V +EMP RD+V WNS++ G
Sbjct: 153 LWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAG 212

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI 307
           +AQN   ++AL L + M+      D  T+ S+L A T  +                    
Sbjct: 213 YAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTS-------------------- 252

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
                      C ++     +F ++ +K +ISW+ MI+    N    EA+ L+  M+V  
Sbjct: 253 -----------CDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHG 301

Query: 368 IKPNYITIVGVLFACS--HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
           ++P+ ++I  VL AC    A  +    + +   KK   + P     + +ID+  + G L+
Sbjct: 302 VEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKK---LRPNLLLENALIDMYAKCGCLK 358

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
           EA  +  +M +  D V+W +++ A  +      A+   KK+
Sbjct: 359 EARAVFDQMMFR-DVVSWTSMISAYGMSGQGKDAVALFKKM 398



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 135/271 (49%), Gaps = 19/271 (7%)

Query: 191 LRQLHCGI-IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           L++LH  I I      +  +   L+  YA  GE      +F+E+  +++V +N +I  + 
Sbjct: 54  LKKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYV 113

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
            N    +AL ++K M   GF  D  T   VL+AC+    L +G Q+H  V+K   D +L 
Sbjct: 114 NNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLY 173

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + N L+ MY KC  L+ A  V   M  +D++SW++M++G AQNG   +ALKL   M+  +
Sbjct: 174 IGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLK 233

Query: 368 IKPNYITIVGVLFA-----CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           +KP+  T+  +L A     C +  +V+D +   K              ++ MI +     
Sbjct: 234 LKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLI--------SWNVMIAVYVNNA 285

Query: 423 KLQEAVKLIHEMP---YEPDAVTWRALLGAC 450
              EAV L  +M     EPDAV+  ++L AC
Sbjct: 286 MPNEAVDLYLQMQVHGVEPDAVSISSVLPAC 316


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/575 (38%), Positives = 331/575 (57%), Gaps = 56/575 (9%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYC---DAKMNDKALELLIFMLREG-VRPNMFTYSA 180
           ++ A+ +F QMPE N   W T++       D  +  +AL L   ML +G V+PN FT+ +
Sbjct: 68  IDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127

Query: 181 VLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYA------------------- 218
           VL+AC     LR   Q+H  I+K GF  D FV S L+ +Y                    
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDF 187

Query: 219 ----------------------------KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
                                       +LG++++A+ +F+EMP R +V WN +I G+AQ
Sbjct: 188 DGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQ 247

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
           N    EA+NL++ M+ +    +  TL SVL A   +  LELG  +H++  K   + D +L
Sbjct: 248 NGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVL 307

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            +AL+DMY KCGS++ A+ VF  + +++ I+WS +I   A +G +++A+  F  M  + +
Sbjct: 308 GSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGV 367

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
            PN +  +G+L ACSHAG VE+G + F  M K  G+ P  EHY CM+DLLGRAG L+EA 
Sbjct: 368 TPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAE 427

Query: 429 KLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
           +LI  MP EPD V W+ALLGACK+H+N  +    A+ ++ L P D G+Y+ LSN+YA+  
Sbjct: 428 ELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLG 487

Query: 489 KWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLV 548
            W+ VA VR  M+   I K+PGCSWIE++  IH F V D SH +  +I   L  +  KL 
Sbjct: 488 NWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLR 547

Query: 549 GVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHT 608
             GY P+T  V  + + +++  ++QYHSEK+A+ FGL+S      ++I KNLRIC DCH 
Sbjct: 548 SNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHA 607

Query: 609 FAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             KL + +  + I++RD  R+H F+ G+CSC DYW
Sbjct: 608 SLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/537 (39%), Positives = 323/537 (60%), Gaps = 6/537 (1%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           NIL+N +V+   L  A+ +FD+MP+R + +W  MI+     + N++ L L   M   G  
Sbjct: 29  NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFS 88

Query: 173 PNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P+ +T  +V        S+ I +Q+H   IK G E D+ V S+L  +Y + G+L++ E V
Sbjct: 89  PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIV 148

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
              MP R+LV WN++I G AQN   +  L LYK MK +G   ++ T  +VL +C+ LA+ 
Sbjct: 149 IRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIR 208

Query: 290 ELGTQVHVHVLKYDHDLILNNA--LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
             G Q+H   +K     ++     L+ MY KCG L DA   FS    +D + WS+MIS  
Sbjct: 209 GQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAY 268

Query: 348 AQNGYSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
             +G   EA++LF +M + + ++ N +  + +L+ACSH+G  + G   F  M + YG  P
Sbjct: 269 GFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKP 328

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
           G +HY+C++DLLGRAG L +A  +I  MP + D V W+ LL AC +H+N ++A    K+I
Sbjct: 329 GLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEI 388

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
           L +DP D   Y+LL+N++A++++W +V+EVRK+MR + + KE G SW E   ++H F + 
Sbjct: 389 LQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMG 448

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D S  +  +I  +LK L  ++   GY PDT  VL D++ E+KE  +  HSEKLA+ F LM
Sbjct: 449 DRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALM 508

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            L +G  IRI KNLR+C DCH   K  + ++N+ I +RD  R+HHF +G CSCGDYW
Sbjct: 509 ILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 173/354 (48%), Gaps = 14/354 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++    +F +  +     + MH +   G   D  T   +        +V   + +H +
Sbjct: 60  NAMIAGLIQFEFNEEGLSLFREMHGL---GFSPDEYTLGSVFSGSAGLRSVSIGQQIHGY 116

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
            +  G E +  + + L +M+++   L++ +++   MP RN+V+W T+I         +  
Sbjct: 117 TIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETV 176

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDI 216
           L L   M   G RPN  T+  VL +C  L I    +Q+H   IK+G  S V V S+LI +
Sbjct: 177 LYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISM 236

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQST 275
           Y+K G L +A   F+E    D V+W+S+I  +  +   DEA+ L+  M ++     ++  
Sbjct: 237 YSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVA 296

Query: 276 LTSVLRACTGLALLELGTQVH-VHVLKYDHDLILNN--ALLDMYCKCGSLEDAMSVFSRM 332
             ++L AC+   L + G ++  + V KY     L +   ++D+  + G L+ A ++   M
Sbjct: 297 FLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSM 356

Query: 333 -IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
            I+ D++ W T++S    +  ++ A ++F+  ++ +I PN  +   VL A  HA
Sbjct: 357 PIKTDIVIWKTLLSACNIHKNAEMAQRVFK--EILQIDPN-DSACYVLLANVHA 407



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 4/140 (2%)

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
           +N L++ Y + G L +A  VF  M  + + +W+ MI+GL Q  +++E L LF  M     
Sbjct: 28  SNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGF 87

Query: 369 KPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
            P+  T+  V    +    V  G   H  ++K  YG++      S +  +  R GKLQ+ 
Sbjct: 88  SPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIK--YGLELDLVVNSSLAHMYMRNGKLQDG 145

Query: 428 VKLIHEMPYEPDAVTWRALL 447
             +I  MP   + V W  L+
Sbjct: 146 EIVIRSMPVR-NLVAWNTLI 164


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/679 (35%), Positives = 369/679 (54%), Gaps = 74/679 (10%)

Query: 39  SSSLLDDFTRFCYQ--RDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLAR---HAVEEA 93
           S+ L D   R C +   D  R       M+  GVR D  T+  L KC  +    H++   
Sbjct: 66  STFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLC 125

Query: 94  KLVHNHVLSGGFEPET-FLVNILLNMHVKFSLLEEA------------------------ 128
            ++H   L         F+ N L++M+++  L  +A                        
Sbjct: 126 TMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAK 185

Query: 129 -------QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
                  Q+L  Q P R+V+SWT++I+AY  A    +A+     ML  G+ P+  T  AV
Sbjct: 186 MGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAV 245

Query: 182 LRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN------- 231
           L AC  L  L   R LH  + + G  +   +  ALID+YAK G+  +A+ VF+       
Sbjct: 246 LSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPR 305

Query: 232 -------------------------EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
                                    EM  RD++ +NS++ G+  +  + EAL L+  M+R
Sbjct: 306 PQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRR 365

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLED 324
                D  T+ ++L AC  L  L+ G  +H  + +   + D+ L  ALLDMY KCG +++
Sbjct: 366 HDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDE 425

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           A  VF RM ++DV +W+ MI+GLA NG  + AL+ F  M+    +PN ++ + VL ACSH
Sbjct: 426 ATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSH 485

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           +  + +G  +F  M+  Y I P  EHY CMIDLLGR+G L EA+ L+  MP +P+AV W 
Sbjct: 486 SCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWA 545

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
           ++L AC+VH++ DLA CAA+ +L L+P + G Y+ L NIY +S++W+  +++R  M  R 
Sbjct: 546 SILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQ 605

Query: 505 ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLE 564
           + K  G S I V  Q+H F V+D SHP+I +I   L+ +  +L  +GY+P T+ +  D++
Sbjct: 606 VKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVDVD 665

Query: 565 GEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIR 624
            E+KE ++  HSEKLAI FGL++L     + IRKNLR+C DCH+  KL +++ N+ I++R
Sbjct: 666 EEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVR 725

Query: 625 DPIRYHHFQDGNCSCGDYW 643
           D  R+HHF++G CSC D+W
Sbjct: 726 DRSRFHHFREGTCSCNDFW 744



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 200/445 (44%), Gaps = 94/445 (21%)

Query: 90  VEEAKLVHNHVLSGG---FEPET--FLVNILLN------MHVKFSLLEEAQVLFDQMPER 138
           V +A  +H  + + G     P +   L+N L+N      +H++++L      LFD+MP  
Sbjct: 12  VRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALH-----LFDRMPPS 66

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIF--MLREGVRPNMFTYSAVLRAC------DSLII 190
             +  T + +  C    +D     L+F  M R GVRP+ FT+  + +         SL++
Sbjct: 67  TFLFDTALRA--CSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLL 124

Query: 191 LRQLHCGIIKVGFESDV-FVRSALIDIYAKLGELRNAECVFNEM---------------- 233
              LH   ++    S   FV ++LI +Y +LG   +A   F+E+                
Sbjct: 125 CTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLA 184

Query: 234 ---------------PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278
                          P RD++ W S+I  +++ +   EA+  +K M   G A D+ T+ +
Sbjct: 185 KMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIA 244

Query: 279 VLRACTGLALLELGTQVHVHV----LKYDHDLILN------------------------- 309
           VL AC  L  LELG  +H+ V    +    +L++                          
Sbjct: 245 VLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGP 304

Query: 310 -----NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
                NA++D YCK G ++ A S+F  M  +D+I++++M++G   +G  +EAL LF SM+
Sbjct: 305 RPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMR 364

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
              ++ +  T+V +L AC+  G ++ G      +++   ++      + ++D+  + G++
Sbjct: 365 RHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRL-VEADIYLGTALLDMYMKCGRV 423

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGA 449
            EA  +   M  + D  TW A++  
Sbjct: 424 DEATIVFQRMG-KRDVHTWTAMIAG 447


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/586 (36%), Positives = 352/586 (60%), Gaps = 19/586 (3%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           T    +  CLA   V+  K VH + +  G E  T + N L +++ K   L+ A   F ++
Sbjct: 181 TLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRI 240

Query: 136 PERNVVSWTTMISAYC-DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL--- 191
           PE+NV++WTTMISA   D +  +  + L I ML +GV PN FT ++V+  C + + L   
Sbjct: 241 PEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLG 300

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           +Q+     K+G E+++ V+++ + +Y + GE   A  +F +M    ++ WN++I G+AQ 
Sbjct: 301 KQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQI 360

Query: 252 SDVD-----------EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
            D             +AL +++ +KR+    D  T +S+L  C+ +  LE G Q+H   +
Sbjct: 361 MDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTI 420

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K  +  D+++N+AL++MY KCG ++DA   F  M  +  ++W++MISG +Q+G  QEA++
Sbjct: 421 KSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQ 480

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
           LFE M+++ ++PN IT V +L ACS+AG VE+  ++F  MKK Y I+P  +HY CMID+ 
Sbjct: 481 LFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMF 540

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
            R G++++A   I    +EP+   W +L+  C+ H N +LA  AA K+L L P+   TYI
Sbjct: 541 VRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYI 600

Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
           LL N+Y ++++W +VA VRK M+   +      SWI +  +++ F   D +HPQ  ++ +
Sbjct: 601 LLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQ 660

Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKE--DSIQYHSEKLAIVFGLMSLTQGKTIRI 596
            L++L++K   +GY P  N  L D E ++K    S+++HSE+LA+  GL+    G T+R+
Sbjct: 661 LLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVRV 720

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
            KN+ +C DCH+  KL + +EN+ I++RD  R H F+DG CSCGD+
Sbjct: 721 TKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 766



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 211/425 (49%), Gaps = 25/425 (5%)

Query: 56  PRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNIL 115
           P  ++    M   G    S  Y  L+  C+   ++  A+ VH H+   G   + F+   L
Sbjct: 60  PLDVQEAMTMLTEGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSL 119

Query: 116 LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
           +N +++ S   +A+ LFD MPERNVV+WT +++ Y         LE+ + ML  G  P+ 
Sbjct: 120 VNAYMRCSAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSH 179

Query: 176 FTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           +T  A L AC +   + + +Q+H   IK G ES   + ++L  +YAKLG L +A   F  
Sbjct: 180 YTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWR 239

Query: 233 MPTRDLVVWNSIIGGFAQNSD-VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           +P ++++ W ++I   A++ + V+  ++L+  M   G   ++ TLTSV+  C     L L
Sbjct: 240 IPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNL 299

Query: 292 GTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G QV     K   + +L + N+ + +Y + G  ++AM +F +M    +I+W+ MISG AQ
Sbjct: 300 GKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQ 359

Query: 350 -------------NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HF 395
                         G+  +AL +F  +K S +KP+  T   +L  CS    +E G   H 
Sbjct: 360 IMDSAKDDLQARSRGF--QALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHA 417

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN 455
           +++K  +  D      S ++++  + G +Q+A K   EMP     VTW +++     H  
Sbjct: 418 QTIKSGFLSDVVVN--SALVNMYNKCGCIQDANKAFLEMPTRT-FVTWTSMISGYSQHGQ 474

Query: 456 TDLAI 460
              AI
Sbjct: 475 PQEAI 479



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 132/291 (45%), Gaps = 51/291 (17%)

Query: 53  RDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
           RDL R++          ++ D  T++ ++  C A  A+E+ + +H   +  GF  +  + 
Sbjct: 382 RDLKRSV----------MKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVN 431

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           + L+NM+ K   +++A   F +MP R  V+WT+MIS Y       +A++L   M   GVR
Sbjct: 432 SALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVR 491

Query: 173 PNMFTYSAVLRACD--SLIILRQLHCGIIKVGF--ESDVFVRSALIDIYAKLGELRNAEC 228
           PN  T+ ++L AC    L+   + +  ++K  +  E  V     +ID++ +LG + +A  
Sbjct: 492 PNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFS 551

Query: 229 VFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
                    +  +W+S++ G   + +          M+ A +AAD+              
Sbjct: 552 FIKRTGFEPNEAIWSSLVAGCRSHGN----------MELAFYAADK-------------- 587

Query: 288 LLELGTQ-VHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
           LLEL  + +  ++L           LL+MY      +D   V   M Q+DV
Sbjct: 588 LLELKPKGIETYIL-----------LLNMYISTERWQDVARVRKLMKQEDV 627


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/657 (34%), Positives = 356/657 (54%), Gaps = 71/657 (10%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+K +  M   G      T   ++  C    A    + VH+ V+  G      + N +LN
Sbjct: 42  AIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLN 101

Query: 118 MHVK-------------------------------FSLLEEAQVLFDQMPERNVVSWTTM 146
           M+ K                                  ++ A+ LF+ MP+R++VSW  M
Sbjct: 102 MYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAM 161

Query: 147 ISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSL---IILRQLHCGIIKV- 201
           I+ Y    ++ KAL+L   ML E  + P+ FT ++VL AC +L    I +Q+H  I++  
Sbjct: 162 IAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTE 221

Query: 202 ------------------------------GFESDVFVRS--ALIDIYAKLGELRNAECV 229
                                           E+D+ V S  AL++ Y K+G++ +A  +
Sbjct: 222 MAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREM 281

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F  M  RD+V W ++I G+ QN   DEA++L++ M   G   +  TL +VL  C  LA L
Sbjct: 282 FGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACL 341

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI-QKDVISWSTMISG 346
           + G Q+H   ++   +    ++NA++ MY + GS   A  +F ++  +K+ I+W++MI  
Sbjct: 342 DYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVA 401

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
           LAQ+G  +EA+ LFE M  + ++P+ IT VGVL ACSHAGFV +G  ++  +K  + I P
Sbjct: 402 LAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAP 461

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
              HY+CM+DLL RAG   EA + I  MP EPDA+ W +LL AC+VH+N +LA  AA+K+
Sbjct: 462 EMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKL 521

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
           L++DP + G Y  ++N+Y+   +W + A + K  + + + KE G SW  +  +IH F   
Sbjct: 522 LSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGAD 581

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D  HPQ D +      + +++ G G+ PD   VL D++ E KE+ +  HSEKLAI FGL+
Sbjct: 582 DVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLI 641

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           S  +  T+R+ KNLR+C DCH   K  +K+ ++ I++RD  R+HHF+DG CSC DYW
Sbjct: 642 STPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 204/434 (47%), Gaps = 76/434 (17%)

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M  K   L +A+ +F +MPER+ VSWT M+     A    +A++ L+ M  +G  P  FT
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 178 YSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK--------------- 219
            + VL +C    +  + R++H  ++K+G  S V V ++++++Y K               
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 220 ----------------LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
                           LG +  AE +F  MP R +V WN++I G+ QN    +AL L+ R
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 264 M-KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--------------------- 301
           M   +  A D+ T+TSVL AC  L  + +G QVH ++L+                     
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSG 240

Query: 302 --------------YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
                          D ++I   ALL+ Y K G +E A  +F  M  +DV++W+ MI G 
Sbjct: 241 SVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGY 300

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDP 406
            QNG + EA+ LF SM     +PN  T+  VL  C+    ++ G   H ++++    ++ 
Sbjct: 301 EQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL--LEQ 358

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
                + +I +  R+G    A ++  ++ +  + +TW +++ A   H   + A+   +++
Sbjct: 359 SSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEM 418

Query: 467 L--NLDPQDPGTYI 478
           L   ++P D  TY+
Sbjct: 419 LRAGVEP-DRITYV 431


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/586 (36%), Positives = 352/586 (60%), Gaps = 19/586 (3%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           T    +  CLA   V+  K VH + +  G E  T + N L +++ K   L+ A   F ++
Sbjct: 141 TLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRI 200

Query: 136 PERNVVSWTTMISAYC-DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL--- 191
           PE+NV++WTTMISA   D +  +  + L I ML +GV PN FT ++V+  C + + L   
Sbjct: 201 PEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLG 260

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           +Q+     K+G E+++ V+++ + +Y + GE   A  +F +M    ++ WN++I G+AQ 
Sbjct: 261 KQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQI 320

Query: 252 SDVD-----------EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
            D             +AL +++ +KR+    D  T +S+L  C+ +  LE G Q+H   +
Sbjct: 321 MDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTI 380

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K  +  D+++N+AL++MY KCG ++DA   F  M  +  ++W++MISG +Q+G  QEA++
Sbjct: 381 KSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQ 440

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
           LFE M+++ ++PN IT V +L ACS+AG VE+  ++F  MKK Y I+P  +HY CMID+ 
Sbjct: 441 LFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMF 500

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
            R G++++A   I    +EP+   W +L+  C+ H N +LA  AA K+L L P+   TYI
Sbjct: 501 VRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYI 560

Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
           LL N+Y ++++W +VA VRK M+   +      SWI +  +++ F   D +HPQ  ++ +
Sbjct: 561 LLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQ 620

Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKE--DSIQYHSEKLAIVFGLMSLTQGKTIRI 596
            L++L++K   +GY P  N  L D E ++K    S+++HSE+LA+  GL+    G T+R+
Sbjct: 621 LLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVRV 680

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
            KN+ +C DCH+  KL + +EN+ I++RD  R H F+DG CSCGD+
Sbjct: 681 TKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 726



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/354 (30%), Positives = 181/354 (51%), Gaps = 25/354 (7%)

Query: 127 EAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD 186
           +A+ LFD MPERNVV+WT +++ Y         LE+ + ML  G  P+ +T  A L AC 
Sbjct: 91  DARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACL 150

Query: 187 S---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
           +   + + +Q+H   IK G ES   + ++L  +YAKLG L +A   F  +P ++++ W +
Sbjct: 151 ASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTT 210

Query: 244 IIGGFAQNSD-VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY 302
           +I   A++ + V+  ++L+  M   G   ++ TLTSV+  C     L LG QV     K 
Sbjct: 211 MISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKI 270

Query: 303 --DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ----------- 349
             + +L + N+ + +Y + G  ++AM +F +M    +I+W+ MISG AQ           
Sbjct: 271 GCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQA 330

Query: 350 --NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDP 406
              G+  +AL +F  +K S +KP+  T   +L  CS    +E G   H +++K  +  D 
Sbjct: 331 RSRGF--QALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDV 388

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
                S ++++  + G +Q+A K   EMP     VTW +++     H     AI
Sbjct: 389 VVN--SALVNMYNKCGCIQDANKAFLEMPTRT-FVTWTSMISGYSQHGQPQEAI 439



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 173/328 (52%), Gaps = 22/328 (6%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   GV  +  T   ++  C  R  +   K V       G E    + N  + ++++   
Sbjct: 232 MLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGE 291

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYC---DAKMND--------KALELLIFMLREGVRP 173
            +EA  LF+QM + ++++W  MIS Y    D+  +D        +AL +   + R  ++P
Sbjct: 292 TDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKP 351

Query: 174 NMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           ++FT+S++L  C +++ L    Q+H   IK GF SDV V SAL+++Y K G +++A   F
Sbjct: 352 DLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAF 411

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
            EMPTR  V W S+I G++Q+    EA+ L++ M+ AG   ++ T  S+L AC+   L+E
Sbjct: 412 LEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVE 471

Query: 291 LGTQVHVHVLKYDH--DLILNN--ALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMIS 345
                +  ++K ++  + ++++   ++DM+ + G +EDA S   R   + +   WS++++
Sbjct: 472 EAEH-YFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVA 530

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYI 373
           G   +G  +  L  + + K+  +KP  I
Sbjct: 531 GCRSHGNME--LAFYAADKLLELKPKGI 556



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 11/232 (4%)

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           R+A  +F+ MP R++V W +++ G+  NS     L ++  M   G      TL + L AC
Sbjct: 90  RDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNAC 149

Query: 284 TGLALLELGTQVHVHVLKYDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
                ++LG QVH + +KY  + I  + N+L  +Y K GSL+ A+  F R+ +K+VI+W+
Sbjct: 150 LASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWT 209

Query: 342 TMISGLAQNGYSQE-ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           TMIS  A++    E  + LF  M +  + PN  T+  V+  C          N  K ++ 
Sbjct: 210 TMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCG----TRLDLNLGKQVQA 265

Query: 401 F---YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           F    G +      +  + L  R G+  EA++L  +M  +   +TW A++  
Sbjct: 266 FSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQME-DASIITWNAMISG 316



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 132/291 (45%), Gaps = 51/291 (17%)

Query: 53  RDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
           RDL R++          ++ D  T++ ++  C A  A+E+ + +H   +  GF  +  + 
Sbjct: 342 RDLKRSV----------MKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVN 391

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           + L+NM+ K   +++A   F +MP R  V+WT+MIS Y       +A++L   M   GVR
Sbjct: 392 SALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVR 451

Query: 173 PNMFTYSAVLRACD--SLIILRQLHCGIIKVGF--ESDVFVRSALIDIYAKLGELRNAEC 228
           PN  T+ ++L AC    L+   + +  ++K  +  E  V     +ID++ +LG + +A  
Sbjct: 452 PNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFS 511

Query: 229 VFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
                    +  +W+S++ G   + +          M+ A +AAD+              
Sbjct: 512 FIKRTGFEPNEAIWSSLVAGCRSHGN----------MELAFYAADK-------------- 547

Query: 288 LLELGTQ-VHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
           LLEL  + +  ++L           LL+MY      +D   V   M Q+DV
Sbjct: 548 LLELKPKGIETYIL-----------LLNMYISTERWQDVARVRKLMKQEDV 587


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/617 (37%), Positives = 346/617 (56%), Gaps = 38/617 (6%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGG--FEPETFLVNI-------- 114
           M  +GV+ +S T+  L K C    A  E K +H H L     F P      I        
Sbjct: 122 MLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGE 181

Query: 115 ---------------------LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
                                L+  +V    L++A+ LFD++P ++VVSW  MIS Y  +
Sbjct: 182 MDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQS 241

Query: 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVR 210
              ++A+     M    V PN  T   VL AC    S  + + +   +   GF S++ + 
Sbjct: 242 GRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLT 301

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
           +ALID+Y K GE   A  +F+ +  +D++ WN++IGG++  S  +EAL L++ M R+   
Sbjct: 302 NALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVK 361

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHV---LKYDHDLILNNALLDMYCKCGSLEDAMS 327
            +  T   +L AC  L  L+LG  VH ++   L+   +  L  +L+DMY KCG +E A  
Sbjct: 362 PNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAER 421

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAG 386
           VF  M  +++ SW+ M+SG A +G+++ AL LF  M      +P+ IT VGVL AC+ AG
Sbjct: 422 VFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAG 481

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            V+ G  +F+SM + YGI P  +HY CMIDLL RA K +EA  L+  M  EPD   W +L
Sbjct: 482 LVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSL 541

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           L ACK H   +     A+++  L+P++ G ++LLSNIYA + +WD+VA +R  +  +G+ 
Sbjct: 542 LSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMK 601

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           K PGC+ IE++  +H F V D  HP+ + I K L  + + L   G+ P+T+ VL D++ E
Sbjct: 602 KVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEE 661

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
            KE ++  HSEKLAI FGL+    G TIRI KNLR+CG+CH+  KL +K+ N+ I+ RD 
Sbjct: 662 WKEGALSQHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 721

Query: 627 IRYHHFQDGNCSCGDYW 643
            R+HHF+DG CSC D W
Sbjct: 722 NRFHHFKDGFCSCNDCW 738



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 202/421 (47%), Gaps = 52/421 (12%)

Query: 94  KLVHNHVLSGGFEPETFLVNILL---------NMHVKFSLLEEAQVLFDQMPERNVVSWT 144
           K +H+ ++  G     F+ + L+         ++    SL EE Q    Q  + NV  W 
Sbjct: 45  KQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQ----QHHKHNVFIWN 100

Query: 145 TMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKV 201
           ++I  Y  +     +L L   ML  GV+PN  T+  + ++C         +QLH   +K+
Sbjct: 101 SLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKL 160

Query: 202 GFESDVFVRSALIDIYAKLGE-------------------------------LRNAECVF 230
               +  V +++I +YA +GE                               L +A  +F
Sbjct: 161 ALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLF 220

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           +E+P +D+V WN++I G+ Q+   +EA+  +  M+ A    ++ST+  VL AC      E
Sbjct: 221 DEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGE 280

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
           LG  +   V    +  +L L NAL+DMYCKCG  + A  +F  + +KDVISW+TMI G +
Sbjct: 281 LGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYS 340

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPG 407
                +EAL LFE M  S +KPN +T +G+L AC+  G ++ G W H   + K       
Sbjct: 341 YLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVH-AYIDKNLRNSSN 399

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
              ++ +ID+  + G ++ A ++   M +  +  +W A+L    +H + + A+    +++
Sbjct: 400 ASLWTSLIDMYAKCGCIEAAERVFRSM-HSRNLASWNAMLSGFAMHGHAERALALFSEMV 458

Query: 468 N 468
           N
Sbjct: 459 N 459



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 149/304 (49%), Gaps = 9/304 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A+   + MQ   V  +  T   ++  C    + E  K + + V   GF     L N L+
Sbjct: 246 EAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALI 305

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K    + A+ LFD + E++V+SW TMI  Y    + ++AL L   MLR  V+PN  
Sbjct: 306 DMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDV 365

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIK-VGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           T+  +L AC  L  L   + +H  I K +   S+  + ++LID+YAK G +  AE VF  
Sbjct: 366 TFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRS 425

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG-FAADQSTLTSVLRACTGLALLEL 291
           M +R+L  WN+++ GFA +   + AL L+  M   G F  D  T   VL ACT   L++L
Sbjct: 426 MHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDL 485

Query: 292 GTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGL 347
           G Q    +++       L     ++D+  +    E+A  +   M ++ D   W +++S  
Sbjct: 486 GHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSAC 545

Query: 348 AQNG 351
             +G
Sbjct: 546 KAHG 549



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 141/311 (45%), Gaps = 42/311 (13%)

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMP- 234
           Y  +L  C ++   +Q+H  IIK G  + VFV+S LI   A    G+L  A  +F E   
Sbjct: 31  YLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQ 90

Query: 235 --TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
               ++ +WNS+I G++ +S    +L+L+ RM   G   +  T   + ++CT       G
Sbjct: 91  HHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEG 150

Query: 293 TQVHVHVLK-----------------------------YD----HDLILNNALLDMYCKC 319
            Q+H H LK                             +D     D +   AL+  Y   
Sbjct: 151 KQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQ 210

Query: 320 GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL 379
           G L+DA  +F  +  KDV+SW+ MISG  Q+G  +EA+  F  M+ + + PN  T+V VL
Sbjct: 211 GCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVL 270

Query: 380 FACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP 438
            AC H    E G W    S  +  G     +  + +ID+  + G+   A +L   +  E 
Sbjct: 271 SACGHTRSGELGKW--IGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIE-EK 327

Query: 439 DAVTWRALLGA 449
           D ++W  ++G 
Sbjct: 328 DVISWNTMIGG 338


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/659 (36%), Positives = 376/659 (57%), Gaps = 54/659 (8%)

Query: 2   ILKAVSKLKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKA 61
           ++  +S  + T P + A   S+ + P V S        +SLL  + R     D   A++ 
Sbjct: 85  LIAGLSLRRHTLPDAAAALASIPLPPSVVSF-------TSLLRGYVRHGLLAD---AIRL 134

Query: 62  MHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV--NILLNMH 119
            H M       + VTY  L+   L    V EA+ + + +      P+  +V    +L+ +
Sbjct: 135 FHQMP----ERNHVTYTVLLGGFLDAGRVNEARKLFDEM------PDKDVVARTAMLSGY 184

Query: 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
            +   + EA+ LFD+MP+RNVVSWT MIS Y        A +L   M       N  +++
Sbjct: 185 CQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDR----NEVSWT 240

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESD------------VFVRSALIDIYAKLGELRNAE 227
           A+L              G I+ G   D            V   +A++  + + G +  A+
Sbjct: 241 AML-------------VGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAK 287

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            +F  M  RD   W+++I  + QN  + EAL+ ++ M   G   + ++  S+L  C  LA
Sbjct: 288 AMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALA 347

Query: 288 LLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
             + G ++H  +L+  +D D+   +AL+ MY KCG+L+ A  VF+    KDV+ W++MI+
Sbjct: 348 TADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMIT 407

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           G AQ+G  +EAL +F+ ++++R+ P+ IT +GVL ACS+ G V++G   F SM     I 
Sbjct: 408 GYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIR 467

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
            G  HYSCM+DLLGRAG + EA+ LI+ MP EPDA+ W AL+GAC++H+N ++A  AAKK
Sbjct: 468 LGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAKK 527

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
           +L L+P   G Y+LLS+IY ++ +W++ +++RK + +R + K PGCSWIE NK +H F  
Sbjct: 528 LLELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTS 587

Query: 526 ADS-SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFG 584
            D  SHP+   I   L+ L   L+  GY+ D ++VL D++ EQK  S++YHSE+ A+ +G
Sbjct: 588 GDVLSHPEHAIILNMLEELDGLLMESGYSADGSFVLHDVDEEQKAQSLRYHSERQAVAYG 647

Query: 585 LMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L+ +  G  IR+ KNLR+CGDCH+  KL  K+ ++ I++RD  R+HHF+DG CSC DYW
Sbjct: 648 LLKVPAGMPIRVMKNLRVCGDCHSAIKLITKITSREIILRDANRFHHFKDGLCSCRDYW 706



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 142/344 (41%), Gaps = 56/344 (16%)

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
           P     N  +   V+   +E A+  FD MP R   S+  +I+ Y    + D AL L   M
Sbjct: 15  PAVVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRM 74

Query: 167 LREGVRPNMFTYSAVLRACD-SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
                  ++ +Y+A++         L      +  +     V   ++L+  Y + G L +
Sbjct: 75  PSR----DLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLAD 130

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F++MP R+ V +  ++GGF     V+EA  L+  M                     
Sbjct: 131 AIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMP-------------------- 170

Query: 286 LALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
                            D D++   A+L  YC+ G + +A ++F  M +++V+SW+ MIS
Sbjct: 171 -----------------DKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMIS 213

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           G AQNG    A KLFE M       N ++   +L     AG VED  + F +M       
Sbjct: 214 GYAQNGKVILARKLFEVMP----DRNEVSWTAMLVGYIQAGHVEDAEDLFNAM------- 262

Query: 406 PGREHYSC--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           P     +C  M+   G+ G +  A  +   M    D  TW A++
Sbjct: 263 PDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDG-TWSAMI 305


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/657 (34%), Positives = 356/657 (54%), Gaps = 71/657 (10%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+K +  M   G      T   ++  C    A    + VH+ V+  G      + N +LN
Sbjct: 148 AIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLN 207

Query: 118 MHVK-------------------------------FSLLEEAQVLFDQMPERNVVSWTTM 146
           M+ K                                  ++ A+ LF+ MP+R++VSW  M
Sbjct: 208 MYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAM 267

Query: 147 ISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSL---IILRQLHCGIIKV- 201
           I+ Y    ++ KAL+L   ML E  + P+ FT ++VL AC +L    I +Q+H  I++  
Sbjct: 268 IAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTE 327

Query: 202 ------------------------------GFESDVFVRS--ALIDIYAKLGELRNAECV 229
                                           E+D+ V S  AL++ Y K+G++ +A  +
Sbjct: 328 MAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREM 387

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F  M  RD+V W ++I G+ QN   DEA++L++ M   G   +  TL +VL  C  LA L
Sbjct: 388 FGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACL 447

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI-QKDVISWSTMISG 346
           + G Q+H   ++   +    ++NA++ MY + GS   A  +F ++  +K+ I+W++MI  
Sbjct: 448 DYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVA 507

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
           LAQ+G  +EA+ LFE M  + ++P+ IT VGVL ACSHAGFV +G  ++  +K  + I P
Sbjct: 508 LAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAP 567

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
              HY+CM+DLL RAG   EA + I  MP EPDA+ W +LL AC+VH+N +LA  AA+K+
Sbjct: 568 EMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKL 627

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
           L++DP + G Y  ++N+Y+   +W + A + K  + + + KE G SW  +  +IH F   
Sbjct: 628 LSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGAD 687

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D  HPQ D +      + +++ G G+ PD   VL D++ E KE+ +  HSEKLAI FGL+
Sbjct: 688 DVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLI 747

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           S  +  T+R+ KNLR+C DCH   K  +K+ ++ I++RD  R+HHF+DG CSC DYW
Sbjct: 748 STPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/442 (27%), Positives = 209/442 (47%), Gaps = 76/442 (17%)

Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
           F  N LL+M  K   L +A+ +F +MPER+ VSWT M+     A    +A++ L+ M  +
Sbjct: 99  FTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTAD 158

Query: 170 GVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK------- 219
           G  P  FT + VL +C    +  + R++H  ++K+G  S V V ++++++Y K       
Sbjct: 159 GFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETA 218

Query: 220 ------------------------LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
                                   LG +  AE +F  MP R +V WN++I G+ QN    
Sbjct: 219 TTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDA 278

Query: 256 EALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK------------- 301
           +AL L+ RM   +  A D+ T+TSVL AC  L  + +G QVH ++L+             
Sbjct: 279 KALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNAL 338

Query: 302 ----------------------YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
                                  D ++I   ALL+ Y K G +E A  +F  M  +DV++
Sbjct: 339 ISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVA 398

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSM 398
           W+ MI G  QNG + EA+ LF SM     +PN  T+  VL  C+    ++ G   H +++
Sbjct: 399 WTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAI 458

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
           +    ++      + +I +  R+G    A ++  ++ +  + +TW +++ A   H   + 
Sbjct: 459 RSL--LEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEE 516

Query: 459 AICAAKKIL--NLDPQDPGTYI 478
           A+   +++L   ++P D  TY+
Sbjct: 517 AVGLFEEMLRAGVEP-DRITYV 537



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 105/220 (47%), Gaps = 34/220 (15%)

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           +VF  ++L+ ++AK G L +A  VF EMP RD V W  ++ G  +     EA+     M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD--LILNNALLDMYCKCGSLE 323
             GF   Q TLT+VL +C       +G +VH  V+K      + + N++L+MY KCG  E
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSE 216

Query: 324 DAMSVFSR-------------------------------MIQKDVISWSTMISGLAQNGY 352
            A +VF R                               M  + ++SW+ MI+G  QNG 
Sbjct: 217 TATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGL 276

Query: 353 SQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDG 391
             +ALKLF  M   S + P+  TI  VL AC++ G V  G
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIG 316


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/574 (40%), Positives = 332/574 (57%), Gaps = 28/574 (4%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
           AK++ NH        + F+V  LL +    + +  A  +F      NV  +T +I     
Sbjct: 53  AKIIRNH-----HHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVL 107

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFV 209
           +      + L   M+   + P+ +  ++VL+AC   + L   R++H  ++K+G  S+  +
Sbjct: 108 SCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSI 167

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVV------------------WNSIIGGFAQN 251
           R  LI++Y K G   +A  VF+EMP RD+V                   W ++I G  +N
Sbjct: 168 RIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRN 227

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILN 309
            + + AL +++ M+R     ++ T+  VL AC+ L  L+LG  V  ++ K+  +L   + 
Sbjct: 228 GESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVG 287

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
            AL++MY +CG +++A  VF +M +K+VI++++MI G A +G S EA++LF  +      
Sbjct: 288 GALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFT 347

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           P+ +T VGVL ACSH G  E G+  F SM K YGI+P  EHY CM+DLLGR G+L+EA  
Sbjct: 348 PSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYS 407

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489
            I  M   PD V   ALL ACK+H N +LA   AK ++     D GTYILLSN Y++S K
Sbjct: 408 FIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGK 467

Query: 490 WDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549
           W E AEVR  MR  GI KEPGCS IEVN +IH F + D  HPQ +KI K L+ L Q L  
Sbjct: 468 WKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRL 527

Query: 550 VGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
            GY P T  VL D+E  +KE ++  HSE+LAI +GL+S     T+R+ KNLR+C DCH  
Sbjct: 528 EGYTPATEVVLHDIEKSEKEWALAIHSERLAICYGLISTKPLTTLRVVKNLRVCNDCHLT 587

Query: 610 AKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KL + +  + IV+RD  R+HHF++G CSCGDYW
Sbjct: 588 IKLISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 125/486 (25%), Positives = 212/486 (43%), Gaps = 71/486 (14%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++L+D     CY  D    +   + M    +  DS     ++K C    A++E + VH+ 
Sbjct: 99  TALIDGLVLSCYYTD---GIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQ 155

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND-- 157
           VL  G      +   L+ ++ K    E+A+ +FD+MPER+VV+ T MI+ Y D  + D  
Sbjct: 156 VLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTV 215

Query: 158 ----------------KALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGI 198
                           +ALE+   M RE V PN  T   VL AC  L  L   R +   +
Sbjct: 216 CWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYM 275

Query: 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEAL 258
            K   E + FV  ALI++Y++ G++  A+ VF +M  ++++ +NS+I GFA +    EA+
Sbjct: 276 DKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAV 335

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCK 318
            L++ + + GF     T   VL AC+   L ELG ++  H +  D+              
Sbjct: 336 ELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEI-FHSMAKDYG------------- 381

Query: 319 CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
                         I+  +  +  M+  L + G  +EA      MKV+   P+++ +  +
Sbjct: 382 --------------IEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVA---PDHVMLGAL 424

Query: 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM---- 434
           L AC   G +E      KS+      D G   Y  + +    +GK +EA ++   M    
Sbjct: 425 LSACKIHGNLELAERVAKSLVACKNADSGT--YILLSNAYSSSGKWKEAAEVRTNMREEG 482

Query: 435 -PYEPDAVTWRA-------LLGACKVHRNTDL--AICAAKKILNLDPQDPGTYILLSNIY 484
              EP   +          LLG  +  +   +   +    +IL L+   P T ++L +I 
Sbjct: 483 IEKEPGCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIE 542

Query: 485 ANSQKW 490
            + ++W
Sbjct: 543 KSEKEW 548



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 145/303 (47%), Gaps = 36/303 (11%)

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           + ++L+ C     +  ++  II+     D FV   L+ + + L  +  A  +F+     +
Sbjct: 35  FISLLQNCKHNNQIPPIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPN 94

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           + ++ ++I G   +    + ++LY +M  +    D   +TSVL+AC     L+ G +VH 
Sbjct: 95  VYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHS 154

Query: 298 HVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS---------------- 339
            VLK     +  +   L+++Y KCG+ EDA  VF  M ++DV++                
Sbjct: 155 QVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDT 214

Query: 340 --WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-W---- 392
             W+ MI GL +NG S  AL++F +M+   + PN +TIV VL ACS  G ++ G W    
Sbjct: 215 VCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSY 274

Query: 393 --NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
              H   +  F G          +I++  R G + EA ++  +M  E + +T+ +++   
Sbjct: 275 MDKHRIELNHFVG--------GALINMYSRCGDIDEAQRVFEQMK-EKNVITYNSMIMGF 325

Query: 451 KVH 453
            +H
Sbjct: 326 ALH 328


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/559 (37%), Positives = 338/559 (60%), Gaps = 6/559 (1%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G R +  TY+ ++  C    A++E K +H HV+   +  ET + N LL ++ K  ++EEA
Sbjct: 209 GTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEA 268

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC--- 185
           +++F+ + +RN++SWT  I+ +       KAL+    M   G+ PN FT+S VL +C   
Sbjct: 269 EIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCV 328

Query: 186 DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP-TRDLVVWNSI 244
              I  R  H  +IK G  S VFV +A+ID+Y+ LGE+  AE  F +M      V WN++
Sbjct: 329 KDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNAL 388

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           I G+  N  +++A+  + RM +   A ++ T +++ +AC+    L    Q+H  ++K   
Sbjct: 389 IAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNV 448

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           + +L + ++L++ Y +CGSLE+A+ VF+++   DV+SW+++I   +QNG   +A+ L   
Sbjct: 449 ESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRK 508

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           M     KP   T + VL ACSH+G V++G   FKSM + Y I P   H SCM+D+LGRAG
Sbjct: 509 MIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAG 568

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
           +L+ A+  I ++  +P A  WR LL AC+ + N  +A   A+KIL+L+P D   Y+ LSN
Sbjct: 569 QLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDLEPNDATVYVTLSN 628

Query: 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKH 542
           +YA   +W +    R+ M  + I+KEPGCSWIEVN +++ F   D +HP++ K+ + LK 
Sbjct: 629 MYAEVGRWADAENQRRLMEQKEISKEPGCSWIEVNNKMYKFFSHDKAHPEMPKVYEKLKQ 688

Query: 543 LIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
           L++++  +GY+P T  VL     + KE  I YHSEKLA+ FGL+SL  GK IR+ KNLR+
Sbjct: 689 LVRQIQDIGYSPPTTTVLHPESRQPKEQLILYHSEKLAVCFGLLSLPPGKPIRVLKNLRV 748

Query: 603 CGDCHTFAKLTAKMENQTI 621
           C DC++  K  +++ ++ I
Sbjct: 749 CLDCYSTMKYISRITDRYI 767



 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 168/473 (35%), Positives = 266/473 (56%), Gaps = 31/473 (6%)

Query: 46   FTRFCYQRDL-PRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGG 104
             T  C +R     A+ A   MQ  G+R +      ++K C         + +H  +L   
Sbjct: 875  LTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNS 934

Query: 105  FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
            FE + ++++ L+ M+ K   +E+A  +FD + ++++V    M+S Y       +AL+L+ 
Sbjct: 935  FESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQ 994

Query: 165  FMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
             M + GV+PN+ +++ ++              G  +VG +S V          +++  L 
Sbjct: 995  KMQQAGVKPNVVSWNTLI-------------AGFSQVGDKSMV----------SEVFRLM 1031

Query: 225  NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
             A  V       D+V W S+I GF QN    E  + +K M   GF     T++S+L ACT
Sbjct: 1032 TANGV-----EPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACT 1086

Query: 285  GLALLELGTQVHVH--VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
             +A L  G ++H +  V+  + D+ + +AL+DMY KCG + +A  +F  M +++ ++W++
Sbjct: 1087 NVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNS 1146

Query: 343  MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
            +I G A +GY  EA++LF  M+ S  K +++T   VL ACSHAG VE G + F  M++ Y
Sbjct: 1147 LIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKY 1206

Query: 403  GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
             I+P  EHY+CM+DLLGRAGKL EA  LI  MP EPD   W ALLGAC+ H N +LA  A
Sbjct: 1207 RIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVA 1266

Query: 463  AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE 515
            A+ +  L+P+ PG+ +LLSN+YA++ +W   A+++K M+ R   K PGCSWIE
Sbjct: 1267 AEHLFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 1319



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 127/469 (27%), Positives = 210/469 (44%), Gaps = 65/469 (13%)

Query: 21   FSLTITPPVASCNTITRNSSSLLDDFTRFCY-----QRDLPRAMKAMHAMQCHGVRAD-- 73
            F L   PP      + +N    LD ++   Y      R +P  + A  AMQ    RA+  
Sbjct: 729  FGLLSLPPGKPIRVL-KNLRVCLDCYSTMKYISRITDRYIPTPLAAAAAMQSLINRANVY 787

Query: 74   ---------------SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118
                           S TYA+ I       A+   + +H H++  G    T+    L++ 
Sbjct: 788  RVYRNISTHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSF 847

Query: 119  HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTY 178
            + +   L  A+ LFD++P  N+  W  +  A       ++AL     M +EG+RPN F  
Sbjct: 848  YTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVL 907

Query: 179  SAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235
             ++L+AC  L   R    +H  I+K  FESD ++ SALI +Y+K G +  A  VF+ +  
Sbjct: 908  PSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVD 967

Query: 236  RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
            +DLVV N+++ G+AQ+  V EALBL ++M++AG                          V
Sbjct: 968  KDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAG--------------------------V 1001

Query: 296  HVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM----IQKDVISWSTMISGLAQNG 351
              +V+ +       N L+  + + G       VF  M    ++ DV+SW+++ISG  QN 
Sbjct: 1002 KPNVVSW-------NTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNF 1054

Query: 352  YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
            ++ E    F+ M      P+ +TI  +L AC++   +  G           G++      
Sbjct: 1055 HNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHG-KEIHGYAMVIGVEKDVYVR 1113

Query: 412  SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            S ++D+  + G + EA  L + MP E + VTW +L+     H   + AI
Sbjct: 1114 SALVDMYAKCGYISEAKILFYMMP-ERNTVTWNSLIFGYANHGYCNEAI 1161



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 186/360 (51%), Gaps = 17/360 (4%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE--------GVRPNMF 176
           L  A +LF++ P+R  VS T    + C     +   E   F   E        G     +
Sbjct: 56  LNNACILFEKTPKRIGVSITESHRSGCTDDPEEGVKEAGFFTRNETPHVEFGGGFPHRQY 115

Query: 177 TYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
            +SA L  C     + + R+ HC ++K+G  SD FV ++LID+YAK GE+ +A  V+++M
Sbjct: 116 VFSA-LSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKM 174

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
            + D    N +I  +A+N    +A  ++ ++   G   +  T +++L  C  ++ ++ G 
Sbjct: 175 TSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGK 234

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+H HV+K  Y  +  + NALL +Y KCG +E+A  VF  + Q+++ISW+  I+G  Q+G
Sbjct: 235 QLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHG 294

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHA-GFVEDGWNHFKSMKKFYGIDPGREH 410
             ++ALK F  M+ S I+PN  T   VL +C     F++    H + +KK  G+  G   
Sbjct: 295 DFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKK--GMASGVFV 352

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
            + +ID+    G++ EA K   +M      V+W AL+    ++   + A+ A  +++  D
Sbjct: 353 GTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKED 412



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 198/412 (48%), Gaps = 11/412 (2%)

Query: 84  CLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSW 143
           C     VE  +  H  V+  G   + F+   L++M+ K   ++ A  ++D+M   +  + 
Sbjct: 123 CGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATC 182

Query: 144 TTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIK 200
             +ISAY       +A ++ + +   G RPN +TYS +L  C ++  +   +QLH  ++K
Sbjct: 183 NCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVK 242

Query: 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNL 260
           + + S+  V +AL+ +Y+K G +  AE VF  +  R+++ W + I GF Q+ D  +AL  
Sbjct: 243 MQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQ 302

Query: 261 YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCK 318
           +  M+ +G   ++ T + VL +C  +     G   H  V+K      + +  A++DMY  
Sbjct: 303 FSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSG 362

Query: 319 CGSLEDAMSVFSRMIQ-KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
            G +++A   F +M +    +SW+ +I+G   N   ++A++ F  M    +  N  T   
Sbjct: 363 LGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSN 422

Query: 378 VLFACSH-AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY 436
           +  ACS           H + +K    ++      S +I+   + G L+ AV++  ++  
Sbjct: 423 IFKACSSFPSLATTVQIHSRLIKS--NVESNLHVASSLIEAYTQCGSLENAVQVFTQIS- 479

Query: 437 EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
           + D V+W +++ A   + +   AI   +K++  +   P +   L+ + A S 
Sbjct: 480 DADVVSWNSIIKAYSQNGDPWKAIFLLRKMIE-EGNKPTSXTFLTVLSACSH 530



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 141/326 (43%), Gaps = 40/326 (12%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           +     + +AM+A   M    V  +  TY+ + K C +  ++     +H+ ++    E  
Sbjct: 392 YVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESN 451

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             + + L+  + +   LE A  +F Q+ + +VVSW ++I AY       KA+ LL  M+ 
Sbjct: 452 LHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIE 511

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
           EG +P   T+  VL AC         H G+++ G E   F +S + D Y+   E  +  C
Sbjct: 512 EGNKPTSXTFLTVLSACS--------HSGLVQEGQE---FFKSMVQD-YSIQPEETHCSC 559

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           + +            I+G   Q   ++ AL+  K++     A   S    +L AC   + 
Sbjct: 560 MVD------------ILGRAGQ---LENALDFIKKLTMKPTA---SIWRPLLAACRYNSN 601

Query: 289 LELGTQVHVHVLKYD-HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV-----ISW-- 340
           L++   V   +L  + +D  +   L +MY + G   DA +    M QK++      SW  
Sbjct: 602 LQMAEYVAEKILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIE 661

Query: 341 --STMISGLAQNGYSQEALKLFESMK 364
             + M    + +    E  K++E +K
Sbjct: 662 VNNKMYKFFSHDKAHPEMPKVYEKLK 687


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/537 (39%), Positives = 323/537 (60%), Gaps = 6/537 (1%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           NIL+N +V+   L  A+ +FD+MP+R + +W  MI+     + N++ L L   M   G  
Sbjct: 27  NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFS 86

Query: 173 PNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P+ +T  +V        S+ I +Q+H   IK G E D+ V S+L  +Y + G+L++ E V
Sbjct: 87  PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIV 146

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
              MP R+LV WN++I G AQN   +  L LYK MK +G   ++ T  +VL +C+ LA+ 
Sbjct: 147 IRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIR 206

Query: 290 ELGTQVHVHVLKYDHDLILNNA--LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
             G Q+H   +K     ++     L+ MY KCG L DA   FS    +D + WS+MIS  
Sbjct: 207 GQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAY 266

Query: 348 AQNGYSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
             +G   EA++LF +M + + ++ N +  + +L+ACSH+G  + G   F  M + YG  P
Sbjct: 267 GFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKP 326

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
           G +HY+C++DLLGRAG L +A  +I  MP + D V W+ LL AC +H+N ++A    K+I
Sbjct: 327 GLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEI 386

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
           L +DP D   Y+LL+N++A++++W +V+EVRK+MR + + KE G SW E   ++H F + 
Sbjct: 387 LQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMG 446

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D S  +  +I  +LK L  ++   GY PDT  VL D++ E+KE  +  HSEKLA+ F LM
Sbjct: 447 DRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALM 506

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            L +G  IRI KNLR+C DCH   K  + ++N+ I +RD  R+HHF +G CSCGDYW
Sbjct: 507 ILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 563



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 173/354 (48%), Gaps = 14/354 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++    +F +  +     + MH +   G   D  T   +        +V   + +H +
Sbjct: 58  NAMIAGLIQFEFNEEGLSLFREMHGL---GFSPDEYTLGSVFSGSAGLRSVSIGQQIHGY 114

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
            +  G E +  + + L +M+++   L++ +++   MP RN+V+W T+I         +  
Sbjct: 115 TIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETV 174

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDI 216
           L L   M   G RPN  T+  VL +C  L I    +Q+H   IK+G  S V V S+LI +
Sbjct: 175 LYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISM 234

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQST 275
           Y+K G L +A   F+E    D V+W+S+I  +  +   DEA+ L+  M ++     ++  
Sbjct: 235 YSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVA 294

Query: 276 LTSVLRACTGLALLELGTQVH-VHVLKYDHDLILNN--ALLDMYCKCGSLEDAMSVFSRM 332
             ++L AC+   L + G ++  + V KY     L +   ++D+  + G L+ A ++   M
Sbjct: 295 FLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSM 354

Query: 333 -IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
            I+ D++ W T++S    +  ++ A ++F+  ++ +I PN  +   VL A  HA
Sbjct: 355 PIKTDIVIWKTLLSACNIHKNAEMAQRVFK--EILQIDPN-DSACYVLLANVHA 405



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 4/140 (2%)

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
           +N L++ Y + G L +A  VF  M  + + +W+ MI+GL Q  +++E L LF  M     
Sbjct: 26  SNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGF 85

Query: 369 KPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
            P+  T+  V    +    V  G   H  ++K  YG++      S +  +  R GKLQ+ 
Sbjct: 86  SPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIK--YGLELDLVVNSSLAHMYMRNGKLQDG 143

Query: 428 VKLIHEMPYEPDAVTWRALL 447
             +I  MP   + V W  L+
Sbjct: 144 EIVIRSMPVR-NLVAWNTLI 162


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/590 (36%), Positives = 356/590 (60%), Gaps = 11/590 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   GV+ +  T++  +K C   + ++  + +H+  +  GF+    + N +++M+ K   
Sbjct: 64  MGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGR 123

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           + EA  +F+ MP RN++SW  MI+ Y  A   +KAL L   M   G   + FT+++ L+A
Sbjct: 124 INEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKA 183

Query: 185 CDSLIILR---QLHCGIIKVGF--ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
           C  L  ++   Q+H  +I  GF    +  V  ALID+Y K G+L  A  VF+ +  + ++
Sbjct: 184 CSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVI 243

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
            W ++I G+AQ  ++ E++ L+++++ +    D   L+S++      AL++ G Q+H   
Sbjct: 244 SWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFA 303

Query: 300 LKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           +K     D+ + N++LDMY KCG + +A  +FS M  ++VISW+ MI+G  ++G  +EA+
Sbjct: 304 IKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAI 363

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
           +LF+ M++   +P+ +T + VL  CSH+G VE G  +F  +  ++GI    EHY+CM+DL
Sbjct: 364 RLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDL 423

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           LGRAG+L+EA  L+  MP E +   W+ LL AC+VH + +L       +L LD ++P  Y
Sbjct: 424 LGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNY 483

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           +++SNIYA++  W E   +R+ ++++ + KE G SW+E++K++H F   D +HP  +KI+
Sbjct: 484 VMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIH 543

Query: 538 KHLKHLIQKLV-GVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM--SLTQG-KT 593
           + LK + +++   +GY     Y L D+E E K D+++ HSEKLAI   L+   L +G K 
Sbjct: 544 EILKEMERRMKEELGYVYGVKYALHDVEEESKMDNLRVHSEKLAIGLALVCGGLEEGRKV 603

Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           IR+ KNLR+CGDCH F K  +K+     V+RD  R+H F+DG CSC DYW
Sbjct: 604 IRVFKNLRVCGDCHEFIKGLSKILRVVFVVRDANRFHRFEDGLCSCRDYW 653



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 131/390 (33%), Positives = 204/390 (52%), Gaps = 46/390 (11%)

Query: 104 GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALE-L 162
           GF  +  L N L+ M+ K   L  A  +FD+M +RNVVSWT ++   C    N   LE L
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALM---CGHIQNGNPLESL 58

Query: 163 LIF--MLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIY 217
           L+F  M   GV+PN FT+S  L+AC   + L I RQ+H   +K GF+    V +++ID+Y
Sbjct: 59  LLFSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMY 118

Query: 218 AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT 277
           +K G +  A C+F  MP R+L+ WN++I G+      ++AL L+++M+  G   D+ T T
Sbjct: 119 SKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFT 178

Query: 278 SVLRACTGLALLELGTQVHVHVLK----YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
           S L+AC+ L  ++ G Q+H  ++     Y  +  +  AL+D+Y KCG L  A  VFS + 
Sbjct: 179 STLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIE 238

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393
           +K VISW+ +I G AQ G   E+++LF  ++ S I+ +   +  ++   +    V+ G  
Sbjct: 239 EKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQ 298

Query: 394 -HFKSMKKFYGID---------------------------PGRE--HYSCMIDLLGRAGK 423
            H  ++K   G+D                           P R    ++ MI   G+ G 
Sbjct: 299 MHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGL 358

Query: 424 LQEAVKLIHEMPY---EPDAVTWRALLGAC 450
            +EA++L  EM     EPD VT+ A+L  C
Sbjct: 359 GKEAIRLFDEMQLDSTEPDDVTYLAVLLGC 388



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 136/252 (53%), Gaps = 8/252 (3%)

Query: 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNL 260
           +GF  D+ + + LI +Y K G L  A  VF+ M  R++V W +++ G  QN +  E+L L
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 261 YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNALLDMYCK 318
           + +M  +G   +  T ++ L+AC  L  L++G Q+H   +K   D+  ++ N+++DMY K
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSK 120

Query: 319 CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
           CG + +A  +F  M  +++ISW+ MI+G    G+ ++AL LF+ M+      +  T    
Sbjct: 121 CGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTST 180

Query: 379 LFACSHAGFVEDG--WNHFKSMKKF-YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435
           L ACS  G +++G   + F     F Y ++        +IDL  + GKL  A ++   + 
Sbjct: 181 LKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVA--GALIDLYVKCGKLFMARRVFSHIE 238

Query: 436 YEPDAVTWRALL 447
            E   ++W AL+
Sbjct: 239 -EKHVISWTALI 249



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 152/305 (49%), Gaps = 11/305 (3%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF--EPETFLVNI 114
           +A+     MQ  G   D  T+   +K C    A++E   +H  +++GGF     T +   
Sbjct: 157 KALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGA 216

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           L++++VK   L  A+ +F  + E++V+SWT +I  Y       +++EL   +    ++ +
Sbjct: 217 LIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVD 276

Query: 175 MFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
            F  S+++       ++   +Q+H   IKV    D+ V ++++D+Y K G +  AE +F+
Sbjct: 277 GFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFS 336

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           EMP R+++ W  +I G+ ++    EA+ L+  M+      D  T  +VL  C+   L+E 
Sbjct: 337 EMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEK 396

Query: 292 GTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
           G +    +  Y H +         ++D+  + G L++A ++   M ++ +V  W T++S 
Sbjct: 397 GQEYFSRLCSY-HGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSA 455

Query: 347 LAQNG 351
              +G
Sbjct: 456 CRVHG 460



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 9/180 (5%)

Query: 300 LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
           + +  DL+L+N L+ MY KCG L  A  VF RM++++V+SW+ ++ G  QNG   E+L L
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLL 418
           F  M +S +KPN  T    L AC     ++ G   H   +K   G D      + +ID+ 
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKT--GFDMVNVVGNSIIDMY 118

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
            + G++ EA  +   MP   + ++W A++    V        C    +L    Q+ G ++
Sbjct: 119 SKCGRINEAACMFEVMPVR-NLISWNAMIAGYTVA-----GFCEKALVLFQKMQEVGGFL 172



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 103/220 (46%), Gaps = 21/220 (9%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           +  + +L  +M+    ++   ++ D    + ++        V++ K +H   +      +
Sbjct: 252 YAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVD 311

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             + N +L+M++K  ++ EA+ LF +MP RNV+SWT MI+ Y    +  +A+ L   M  
Sbjct: 312 ISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQL 371

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFE------------SDVFVRSALIDI 216
           +   P+  TY AVL  C         H G+++ G E            + V   + ++D+
Sbjct: 372 DSTEPDDVTYLAVLLGCS--------HSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDL 423

Query: 217 YAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVD 255
             + G L+ A+ + + MP   ++ +W +++     + D++
Sbjct: 424 LGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLE 463


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/602 (35%), Positives = 348/602 (57%), Gaps = 9/602 (1%)

Query: 50  CYQRD--LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY ++     A+     M  HG + D      L         +   +  H + +      
Sbjct: 341 CYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHT 400

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           +  + N L++M++K   +E +  +F+ M  R+ +SWTT+++ +  +  + +ALE+++ + 
Sbjct: 401 DLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQ 460

Query: 168 REGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           +EG+  +     ++L  C    S+ +L+Q+HC  I+ G   D+ + + LIDIY + GE  
Sbjct: 461 KEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGL-LDLILENRLIDIYGECGEFD 519

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
           ++  +F  +  +D+V W S+I     N  ++ A+ L+  M++A    D   L S+L A  
Sbjct: 520 HSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIA 579

Query: 285 GLALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
           GL+ L  G QVH  +++ +  +   + ++L+DMY  CGS+  A+ VF R   KDV+ W+ 
Sbjct: 580 GLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTA 639

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           MI+    +G+ ++A+ LF+ M  + + P++++ + +L+ACSH+  VE+G ++   M   Y
Sbjct: 640 MINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKY 699

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            + P +EHY+C++D+LGR+G+ +EA + I  MP +P +  W ALLGAC+VHRN  LA+ A
Sbjct: 700 RLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVA 759

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A K+L L+P +PG YIL+SN++A   KW+   E R  M  RG+ K P CSWIE+   IH 
Sbjct: 760 ANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHT 819

Query: 523 FNVADSSHPQIDKINKHLKHLIQKL-VGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAI 581
           F   D  H   + I+  L  + + L    GY  DT +VL D   E+K D +  HSE++AI
Sbjct: 820 FTSGDYCHRDSEAIHLKLSEITEMLRREGGYVEDTRFVLHDTSEEEKIDMLHKHSERIAI 879

Query: 582 VFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641
            FGL+S   G  IRI KNLR+CGDCH F KL +K+  + IV+RD  R+HHF  G+CSC D
Sbjct: 880 AFGLISTRPGMPIRIAKNLRVCGDCHEFTKLVSKLFERDIVVRDANRFHHFSGGSCSCED 939

Query: 642 YW 643
           +W
Sbjct: 940 FW 941



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 131/428 (30%), Positives = 218/428 (50%), Gaps = 27/428 (6%)

Query: 38  NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVT--YAELIKCCLARHAVEEAKL 95
           NS+S      R C + DL +A++ +        RA      Y  ++    AR A  E + 
Sbjct: 27  NSASA--SLKRLCKEGDLRQALRQLT------TRAPPAREHYGWVLDLVAARRAAAEGRQ 78

Query: 96  VHNHVLSGGF---EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
           VH H ++ G    + + FL   L+ M+ +   +++A+ LF+ MP R V SW  ++ AY  
Sbjct: 79  VHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLS 138

Query: 153 AKMNDKALELLIFM---LREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESD 206
           +    +A+ +   M      G  P+  T ++VL+AC +    R   ++H   +KVG +  
Sbjct: 139 SGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKS 198

Query: 207 VFVRSALIDIYAKLGELRNAECVFN--EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
             V +ALI +YAK G L +A  VF   +   RD+  WNS++ G  QN    EAL L++ M
Sbjct: 199 TLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGM 258

Query: 265 KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL-ILNNALLDMYCKCGSLE 323
           + AGF  +  T  +VL+ C  L LL LG ++H  +LK   +L I  NALL MY K G ++
Sbjct: 259 QSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVMYAKYGRVD 318

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
            A+ VF ++ +KD ISW++M+S   QN +  EA+  F  M     +P++  +V +  A  
Sbjct: 319 SALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALG 378

Query: 384 HAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
           H   + +G   H  ++K+    D   +  + ++D+  + G ++ + K+   M    D ++
Sbjct: 379 HLSRLNNGREFHAYAIKQRLHTD--LQVGNTLMDMYIKCGSIECSAKVFESMGIR-DHIS 435

Query: 443 WRALLGAC 450
           W  +L AC
Sbjct: 436 WTTIL-AC 442


>gi|242055215|ref|XP_002456753.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
 gi|241928728|gb|EES01873.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
          Length = 521

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/517 (41%), Positives = 318/517 (61%), Gaps = 15/517 (2%)

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR------ 192
            VV++   IS    A +  +AL L   M   G+R + +T   +L   +S  +LR      
Sbjct: 8   GVVAYNAAISRCARAGLYARALALFREMRGRGLRADEYTLPPLL---NSAALLRGPPGAV 64

Query: 193 -QLHCGIIKVGFESDVFVRSALIDIYAKL---GELRNAECVFNEMPTRDLVVWNSIIGGF 248
             LH  +++ G    + V +AL+D YA+L   G    A  VF+EMP RD+V W S++ G 
Sbjct: 65  AALHALLLRAGLAHHLHVANALVDAYARLPCAGGAATARAVFDEMPRRDVVTWTSLLTGL 124

Query: 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI- 307
           A+      A+  Y  M  AG   D+  + +VL +C G   L++G  VH   +        
Sbjct: 125 ARAGAHAAAVRAYHGMVAAGVQTDEFAVAAVLSSCAGSTALDVGRSVHAAAVHLGLCPFR 184

Query: 308 -LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
            + N+L+ MY K G+L DA +VF  M  +  I+W+ +I G AQNG  + +L+++  M  S
Sbjct: 185 SVGNSLVSMYAKTGALHDARAVFDAMPARCTITWTALIVGYAQNGRGRRSLEVYTDMVRS 244

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
             +P+Y+T +G+LFACSHAG V+ G +HF+SM   YGI PG +HY+CM+DLLGRAG+L E
Sbjct: 245 GCRPDYVTFIGLLFACSHAGLVDAGRDHFRSMAVDYGIAPGPDHYACMVDLLGRAGRLDE 304

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           A+ L++    E DA  W++LLGAC+VHRN +LA  AA+ +  LDP D   Y++LSN+Y+ 
Sbjct: 305 AMDLLNRSSTELDATVWKSLLGACRVHRNAELAERAAEMVWRLDPTDAVPYVMLSNLYSR 364

Query: 487 SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
           +++W +VA +R  M+ARGITKEPGCSW+ VN   H F+V D  HP+  +I + ++ + ++
Sbjct: 365 ARRWGDVARIRALMKARGITKEPGCSWVGVNGVTHLFHVEDRGHPRAAEIYRKVEEMTER 424

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           +   GY PDT++ LQD   E +E  + YHSE+LA+ FGL+++     IR+ KNLR+CGDC
Sbjct: 425 IRAEGYVPDTDWALQDEAPEGRERGLAYHSERLAVAFGLLAVPAAAPIRVFKNLRVCGDC 484

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           HT  K+ AK   + I++RD   +HH +DG CSCGDYW
Sbjct: 485 HTAIKMVAKAYGRVIILRDANCFHHMKDGECSCGDYW 521



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 145/301 (48%), Gaps = 13/301 (4%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELI-KCCLARHAVEEAKLVHNHVLSGGFEPETFLVNIL 115
           RA+     M+  G+RAD  T   L+    L R        +H  +L  G      + N L
Sbjct: 27  RALALFREMRGRGLRADEYTLPPLLNSAALLRGPPGAVAALHALLLRAGLAHHLHVANAL 86

Query: 116 LNMHVKFSLL---EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           ++ + +         A+ +FD+MP R+VV+WT++++    A  +  A+     M+  GV+
Sbjct: 87  VDAYARLPCAGGAATARAVFDEMPRRDVVTWTSLLTGLARAGAHAAAVRAYHGMVAAGVQ 146

Query: 173 PNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
            + F  +AVL +C    +L + R +H   + +G      V ++L+ +YAK G L +A  V
Sbjct: 147 TDEFAVAAVLSSCAGSTALDVGRSVHAAAVHLGLCPFRSVGNSLVSMYAKTGALHDARAV 206

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F+ MP R  + W ++I G+AQN     +L +Y  M R+G   D  T   +L AC+   L+
Sbjct: 207 FDAMPARCTITWTALIVGYAQNGRGRRSLEVYTDMVRSGCRPDYVTFIGLLFACSHAGLV 266

Query: 290 ELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSR-MIQKDVISWSTMI 344
           + G   H   +  D+ +         ++D+  + G L++AM + +R   + D   W +++
Sbjct: 267 DAGRD-HFRSMAVDYGIAPGPDHYACMVDLLGRAGRLDEAMDLLNRSSTELDATVWKSLL 325

Query: 345 S 345
            
Sbjct: 326 G 326


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/575 (37%), Positives = 334/575 (58%), Gaps = 9/575 (1%)

Query: 75   VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ 134
            VT+   +  C   + +E+ K+VH  V+         + N L+ M+ KF L++EAQ +   
Sbjct: 554  VTFTTALSAC---YNLEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKI 610

Query: 135  MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ- 193
            MPER+VV+W  +I  + D K  +  ++    M REG+  N  T   +L  C S   L + 
Sbjct: 611  MPERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLKH 670

Query: 194  ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
               +H  I+  GFE D +V+S+LI +YA+ G+L  +  +F+ +  ++   WN+I    A 
Sbjct: 671  GMPIHAHIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAH 730

Query: 251  NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
                +EAL    RM+  G   DQ + +  L     L +L+ G Q+H  ++K  ++ D  +
Sbjct: 731  YGPGEEALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYV 790

Query: 309  NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
             NA +DMY KCG ++D   +      +   SW+ +IS LA++G+ ++A + F  M    +
Sbjct: 791  LNATMDMYGKCGEIDDVFRILPIPKIRSKRSWNILISALARHGFFRQATEAFHEMLDLGL 850

Query: 369  KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
            KP+++T V +L ACSH G V++G  +F SM   +G+    EH  C+IDLLGR+G+L EA 
Sbjct: 851  KPDHVTFVSLLSACSHGGLVDEGLVYFSSMTSEFGVPTAIEHCVCIIDLLGRSGRLAEAE 910

Query: 429  KLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
              I +MP  P+   WR+LL ACKVH N +L   AA ++  L+  D   Y+L SN+ A++Q
Sbjct: 911  GFIDKMPVPPNEFVWRSLLAACKVHGNLELGRKAADRLFELNSSDDSAYVLYSNVCASTQ 970

Query: 489  KWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLV 548
            +W +V  VRK M ++ + K+P CSWI++  ++  F + D  HPQ  +I   L+ L +   
Sbjct: 971  RWGDVENVRKQMESQSLKKKPACSWIKLKNKVMTFGMGDQFHPQSAQIYAKLEELRKMTR 1030

Query: 549  GVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHT 608
              G+ PDT+Y LQD + EQKE ++  HSE++A+ FGL++  +G  +RI KNLR+CGDCH+
Sbjct: 1031 EEGHMPDTSYALQDTDEEQKEHNLWNHSERIALAFGLINSAEGSPLRIFKNLRVCGDCHS 1090

Query: 609  FAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
              KL +K+  + IV+RD  R+HHF  G CSC DYW
Sbjct: 1091 VFKLVSKIVGRKIVVRDSYRFHHFHGGKCSCSDYW 1125



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 109/370 (29%), Positives = 191/370 (51%), Gaps = 21/370 (5%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
            K +H   +    +  TF  N L+NM+ KF  ++ AQ +FD+M +RN  SW  MIS +  
Sbjct: 166 GKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVR 225

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL----RQLHCGIIKVGFESDVF 208
                KA++    M   GV P+ +  ++++ ACD    +    RQ+H  ++K G  S+VF
Sbjct: 226 VGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNVF 285

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           V ++L+  Y   G +  A  +F E+   ++V W S++  +A N    E LN+Y+ ++  G
Sbjct: 286 VGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNG 345

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD---LILNNALLDMYCKCGSLEDA 325
                +T+ +V+R C       +G Q+   V+K   D   + + N+L+ M+    S+E+A
Sbjct: 346 LICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEA 405

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             VF+ M ++D ISW+++I+  A NG  +E+L  F  M+ +  K +YITI  +L AC  A
Sbjct: 406 SRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSA 465

Query: 386 GFVEDGWNHFKSMKKFYGI--DPGREHYSC----MIDLLGRAGKLQEAVKLIHEMPYEPD 439
                   H K  +  +G+    G E   C    ++ +  +AG  ++A  + H MP   D
Sbjct: 466 -------QHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPAR-D 517

Query: 440 AVTWRALLGA 449
            ++W +++ +
Sbjct: 518 LISWNSMMAS 527



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 199/416 (47%), Gaps = 36/416 (8%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           + D +T + L+  C +   ++  + +H  +   G E    + N LL+M+ +    E+A++
Sbjct: 449 KTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAEL 508

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           +F  MP R+++SW +M++++ +      A+ LL+ ML+     N  T++  L AC +L  
Sbjct: 509 VFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNLEK 568

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           L+ +H  +I      ++ + + L+ +Y K G +  A+ V   MP RD+V WN++IGG A 
Sbjct: 569 LKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNALIGGHAD 628

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL-ALLELGTQVHVHVL--KYDHDLI 307
           + D +  +  +  M+R G  ++  T+ ++L  C     LL+ G  +H H++   ++ D  
Sbjct: 629 DKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLKHGMPIHAHIVVAGFELDTY 688

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + ++L+ MY +CG L  +  +F  +  K+  +W+ + S  A  G  +EALK    M+   
Sbjct: 689 VQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEEALKFIARMRNDG 748

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDP-------------------- 406
           +  +  +    L    +   +++G   H   +K  + +D                     
Sbjct: 749 VDLDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNATMDMYGKCGEIDDVF 808

Query: 407 ---------GREHYSCMIDLLGRAGKLQEAVKLIHEM---PYEPDAVTWRALLGAC 450
                     +  ++ +I  L R G  ++A +  HEM     +PD VT+ +LL AC
Sbjct: 809 RILPIPKIRSKRSWNILISALARHGFFRQATEAFHEMLDLGLKPDHVTFVSLLSAC 864



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 200/423 (47%), Gaps = 18/423 (4%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEE-AKL 95
           RN +S  +  + F       +AM+    M  +GV   S   A ++  C     + E A+ 
Sbjct: 211 RNDASWNNMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQ 270

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H +V+  G     F+   LL+ +     + EA  LF+++ E N+VSWT+++  Y D   
Sbjct: 271 IHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGH 330

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFE-SDVFVRS 211
             + L +   +   G+     T + V+R C       +  Q+   +IK G + S V V +
Sbjct: 331 TKEVLNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVAN 390

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
           +LI ++     +  A  VFN M  RD + WNSII   A N   +E+L  +  M+R     
Sbjct: 391 SLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKT 450

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVF 329
           D  T++++L AC     L+ G  +H  + K   + ++ + N+LL MY + GS EDA  VF
Sbjct: 451 DYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVF 510

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
             M  +D+ISW++M++   ++G    A+ L   M  +R   NY+T    L AC +     
Sbjct: 511 HTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNL---- 566

Query: 390 DGWNHFKSMKKF---YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
                 K +  F   + +       + ++ + G+ G + EA K+   MP E D VTW AL
Sbjct: 567 ---EKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMP-ERDVVTWNAL 622

Query: 447 LGA 449
           +G 
Sbjct: 623 IGG 625



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 101/224 (45%), Gaps = 21/224 (9%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           +NSS+    F+   +      A+K +  M+  GV  D  +++  +        ++E + +
Sbjct: 716 KNSSTWNAIFSANAHYGPGEEALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQL 775

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H+ ++  GFE + +++N  ++M+ K   +++   +      R+  SW  +ISA       
Sbjct: 776 HSWIIKLGFELDEYVLNATMDMYGKCGEIDDVFRILPIPKIRSKRSWNILISALARHGFF 835

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGF------ESDVFVR 210
            +A E    ML  G++P+  T+ ++L AC         H G++  G        S+  V 
Sbjct: 836 RQATEAFHEMLDLGLKPDHVTFVSLLSACS--------HGGLVDEGLVYFSSMTSEFGVP 887

Query: 211 SA------LIDIYAKLGELRNAECVFNEMPT-RDLVVWNSIIGG 247
           +A      +ID+  + G L  AE   ++MP   +  VW S++  
Sbjct: 888 TAIEHCVCIIDLLGRSGRLAEAEGFIDKMPVPPNEFVWRSLLAA 931


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/657 (34%), Positives = 355/657 (54%), Gaps = 71/657 (10%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+K +  M   G      T   ++  C    A    + VH+ V+  G      + N +LN
Sbjct: 148 AIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLN 207

Query: 118 MHVK-------------------------------FSLLEEAQVLFDQMPERNVVSWTTM 146
           M+ K                                  ++ A+ LF+ MP R++VSW  M
Sbjct: 208 MYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAM 267

Query: 147 ISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSL---IILRQLHCGIIKV- 201
           I+ Y    ++ KAL+L   ML E  + P+ FT ++VL AC +L    I +Q+H  I++  
Sbjct: 268 IAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTE 327

Query: 202 ------------------------------GFESDVFVRS--ALIDIYAKLGELRNAECV 229
                                           E+D+ V S  AL++ Y K+G++ +A  +
Sbjct: 328 MAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREM 387

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F  M  RD+V W ++I G+ QN   DEA++L++ M   G   +  TL +VL  C  LA L
Sbjct: 388 FGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACL 447

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI-QKDVISWSTMISG 346
           + G Q+H   ++   +    ++NA++ MY + GS   A  +F ++  +K+ I+W++MI  
Sbjct: 448 DYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVA 507

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
           LAQ+G  +EA+ LFE M  + ++P+ IT VGVL ACSHAGFV +G  ++  +K  + I P
Sbjct: 508 LAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAP 567

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
              HY+CM+DLL RAG   EA + I  MP EPDA+ W +LL AC+VH+N +LA  AA+K+
Sbjct: 568 EMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKL 627

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
           L++DP + G Y  ++N+Y+   +W + A + K  + + + KE G SW  +  +IH F   
Sbjct: 628 LSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGAD 687

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D  HPQ D +      + +++ G G+ PD   VL D++ E KE+ +  HSEKLAI FGL+
Sbjct: 688 DVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLI 747

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           S  +  T+R+ KNLR+C DCH   K  +K+ ++ I++RD  R+HHF+DG CSC DYW
Sbjct: 748 STPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/442 (27%), Positives = 209/442 (47%), Gaps = 76/442 (17%)

Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
           F  N LL+M  K   L +A+ +F +MPER+ VSWT M+     A    +A++ L+ M  +
Sbjct: 99  FTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTAD 158

Query: 170 GVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK------- 219
           G  P  FT + VL +C    +  + R++H  ++K+G  S V V ++++++Y K       
Sbjct: 159 GFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETA 218

Query: 220 ------------------------LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
                                   LG +  AE +F  MP R +V WN++I G+ QN    
Sbjct: 219 STVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDA 278

Query: 256 EALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK------------- 301
           +AL L+ RM   +  A D+ T+TSVL AC  L  + +G QVH ++L+             
Sbjct: 279 KALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNAL 338

Query: 302 ----------------------YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
                                  D ++I   ALL+ Y K G +E A  +F  M  +DV++
Sbjct: 339 ISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVA 398

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSM 398
           W+ MI G  QNG + EA+ LF SM     +PN  T+  VL  C+    ++ G   H +++
Sbjct: 399 WTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAI 458

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
           +    ++      + +I +  R+G    A ++  ++ +  + +TW +++ A   H   + 
Sbjct: 459 RSL--LERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEE 516

Query: 459 AICAAKKIL--NLDPQDPGTYI 478
           A+   +++L   ++P D  TY+
Sbjct: 517 AVGLFEEMLRAGVEP-DRITYV 537



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 105/220 (47%), Gaps = 34/220 (15%)

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           +VF  ++L+ ++AK G L +A  VF EMP RD V W  ++ G  +     EA+     M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD--LILNNALLDMYCKCGSLE 323
             GF   Q TLT+VL +C       +G +VH  V+K      + + N++L+MY KCG  E
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAE 216

Query: 324 DAMSVFSRMIQKDV-------------------------------ISWSTMISGLAQNGY 352
            A +VF RM  + V                               +SW+ MI+G  QNG 
Sbjct: 217 TASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGL 276

Query: 353 SQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDG 391
             +ALKLF  M   S + P+  TI  VL AC++ G V  G
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIG 316


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/523 (41%), Positives = 314/523 (60%), Gaps = 7/523 (1%)

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A+ LFD+M +     W T++  Y    + DKA+ +   M   GVRP+ FT+  V++AC  
Sbjct: 88  ARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKACAE 147

Query: 188 LIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L  L     +H  ++K G E    VR+ L+ +Y K GEL  AE +F  M  RDLV WN++
Sbjct: 148 LAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNAL 207

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           I    Q     +AL  ++ M  AG   D  T+ S L AC  L  LE G +++    +   
Sbjct: 208 IAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFAREEGI 267

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           D ++I++NA LDM  KCG ++ AM++F  M Q++VISWST+I G A NG S++AL LF  
Sbjct: 268 DSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSR 327

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF--YGIDPGREHYSCMIDLLGR 420
           MK   ++PNY+T + VL ACSH G V +GW +F  M +     I P +EHY+CM+DLLGR
Sbjct: 328 MKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGR 387

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480
           +G L+EA   I  MP E D   W ALLGAC +H+N  L    A  +  L P+    ++LL
Sbjct: 388 SGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPEIASYHVLL 447

Query: 481 SNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHL 540
           SN+YA + +W  V +VR+ M+ +G  K    S +E N +IH     D SHPQ   I   L
Sbjct: 448 SNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQSASILAKL 507

Query: 541 KHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNL 600
           + L++++  +GY P+T+ V  D+E E+KE ++  HSEKLAI F L++ +    IR+ KNL
Sbjct: 508 EDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSLINGSPKFPIRVMKNL 567

Query: 601 RICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           RICGDCHTF KL +++  + I++RD  R+HHF++G CSC D+W
Sbjct: 568 RICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 148/270 (54%), Gaps = 5/270 (1%)

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           G++  A  +F+EM      +WN+I+ G+ +N   D+A+++Y +M+  G   D  T   V+
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 281 RACTGLALLELGTQVHVHVLKYDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
           +AC  LA L  G  +H HV+K+  + +  +   L+ MY K G L  A  +F  M+++D++
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLV 202

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
           +W+ +I+   Q G+S +AL+ F  M ++ IKP+ +TIV  L AC H G +E G   ++  
Sbjct: 203 AWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFA 262

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
           ++  GID     ++  +D+  + G + +A+ L  EMP + + ++W  ++G   V+  ++ 
Sbjct: 263 RE-EGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMP-QRNVISWSTVIGGYAVNGESEK 320

Query: 459 AICAAKKILNLDPQDPGTYILLSNIYANSQ 488
           A+    ++ N   Q P     L+ + A S 
Sbjct: 321 ALALFSRMKNQGVQ-PNYVTFLAVLSACSH 349



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 151/301 (50%), Gaps = 9/301 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+     M+  GVR D  T+  +IK C     +     +H HV+  G E    +   L+
Sbjct: 118 KAVSVYGKMRHLGVRPDPFTFPFVIKACAELAELWAGLGMHGHVVKHGLEFVAAVRTELM 177

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
            M+VKF  L  A+ LF  M ER++V+W  +I+       + KAL+    M   G++P+  
Sbjct: 178 IMYVKFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSV 237

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T  + L AC  L  L    +++    + G +S++ V +A +D+ AK G++  A  +F+EM
Sbjct: 238 TIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEM 297

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           P R+++ W+++IGG+A N + ++AL L+ RMK  G   +  T  +VL AC+    +  G 
Sbjct: 298 PQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGW 357

Query: 294 QVHVHVLKYDHDLILNN-----ALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGL 347
           Q    + + D   I         ++D+  + G LE+A +    M I+ D   W  ++   
Sbjct: 358 QYFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGAC 417

Query: 348 A 348
           A
Sbjct: 418 A 418



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 23/213 (10%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+++   M   G++ DSVT    +  C     +E  + ++      G +    + N  L
Sbjct: 219 KALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARL 278

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M  K   +++A  LFD+MP+RNV+SW+T+I  Y     ++KAL L   M  +GV+PN  
Sbjct: 279 DMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYV 338

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSA--------------LIDIYAKLGE 222
           T+ AVL AC         H G +  G++   F+  +              ++D+  + G 
Sbjct: 339 TFLAVLSACS--------HTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGRSGH 390

Query: 223 LRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDV 254
           L  A      MP   D  +W +++G  A + ++
Sbjct: 391 LEEAYNFIKIMPIEADPGIWGALLGACAIHQNI 423


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/584 (38%), Positives = 355/584 (60%), Gaps = 25/584 (4%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVE--EAKLVHNHVLSGGFEPETFLV 112
           LP   K ++ +Q +GV   S+T    I     RH V   +A+L  + +         +LV
Sbjct: 12  LPMVEKCINLLQTYGV--SSITKLRQIHAFSIRHGVSISDAELGKHLIF--------YLV 61

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPER-NVVSWTTMISAYCDAKMNDKALELLIFMLREG- 170
           ++     + +     A  +F ++ +  NV  W T+I  Y +   +  A  L   M   G 
Sbjct: 62  SLPSPPPMSY-----AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGL 116

Query: 171 VRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
           V P+  TY  +++A  ++  +R    +H  +I+ GF S ++V+++L+ +YA  G++ +A 
Sbjct: 117 VEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAY 176

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            VF++MP +DLV WNS+I GFA+N   +EAL LY  M   G   D  T+ S+L AC  + 
Sbjct: 177 KVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIG 236

Query: 288 LLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
            L LG +VHV+++K     +L  +N LLD+Y +CG +E+A ++F  M+ K+ +SW+++I 
Sbjct: 237 ALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIV 296

Query: 346 GLAQNGYSQEALKLFESMKVSR-IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI 404
           GLA NG+ +EA++LF+ M+ +  + P  IT VG+L+ACSH G V++G+ +F+ M++ Y I
Sbjct: 297 GLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKI 356

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAK 464
           +P  EH+ CM+DLL RAG++++A + I  MP +P+ V WR LLGAC VH ++DLA  A  
Sbjct: 357 EPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARI 416

Query: 465 KILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFN 524
           +IL L+P   G Y+LLSN+YA+ Q+W +V ++RK M   G+ K PG S +EV  ++H F 
Sbjct: 417 QILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFL 476

Query: 525 VADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFG 584
           + D SHPQ D I   LK +  +L   GY P  + V  D+E E+KE+++ YHSEK+AI F 
Sbjct: 477 MGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFM 536

Query: 585 LMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIR 628
           L+S  +   I + KNLR+C DCH   KL +K+ N+ IV+RD  R
Sbjct: 537 LISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSR 580


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/574 (38%), Positives = 333/574 (58%), Gaps = 57/574 (9%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF---MLREGVRPNMFTYSAV 181
           L+ A  +F+QMP+RN  SW T+I  + ++  +   + + +F   M  E V PN FT+ +V
Sbjct: 75  LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134

Query: 182 LRACDSLIIL---RQLHCGIIKVGFESDVFVRSAL------------------------- 213
           L+AC     +   +Q+H   +K GF  D FV S L                         
Sbjct: 135 LKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKD 194

Query: 214 --------------------IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
                               ID Y +LG+ + A  +F++M  R +V WN++I G++ N  
Sbjct: 195 MVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV----LKYDHDLILN 309
             +A+ +++ MK+     +  TL SVL A + L  LELG  +H++     ++ D   +L 
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDD--VLG 312

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
           +AL+DMY KCG +E A+ VF R+ +++VI+WS MI+G A +G + +A+  F  M+ + ++
Sbjct: 313 SALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVR 372

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           P+ +  + +L ACSH G VE+G  +F  M    G++P  EHY CM+DLLGR+G L EA +
Sbjct: 373 PSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEE 432

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489
            I  MP +PD V W+ALLGAC++  N ++    A  ++++ P D G Y+ LSN+YA+   
Sbjct: 433 FILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGN 492

Query: 490 WDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549
           W EV+E+R  M+ + I K+PGCS I+++  +H F V D SHP+  +IN  L  +  KL  
Sbjct: 493 WSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRL 552

Query: 550 VGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
            GY P T  VL +LE E KE+ + YHSEK+A  FGL+S + GK IRI KNLRIC DCH+ 
Sbjct: 553 AGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSS 612

Query: 610 AKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KL +K+  + I +RD  R+HHFQDG+CSC DYW
Sbjct: 613 IKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 154/332 (46%), Gaps = 60/332 (18%)

Query: 185 CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLG----ELRNAECVFNEMPTRDLVV 240
           C ++  L Q+H   IK G   D    + ++   A       +L  A  +FN+MP R+   
Sbjct: 33  CRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFS 92

Query: 241 WNSIIGGFAQNSDVDEALN----LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           WN+II GF++ SD D+AL      Y+ M       ++ T  SVL+AC     ++ G Q+H
Sbjct: 93  WNTIIRGFSE-SDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIH 151

Query: 297 VHVLKY-----------------------------------------------DHDLILN 309
              LKY                                               D +++L 
Sbjct: 152 GLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLW 211

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
           N ++D Y + G  + A  +F +M Q+ V+SW+TMISG + NG+ ++A+++F  MK   I+
Sbjct: 212 NVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIR 271

Query: 370 PNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
           PNY+T+V VL A S  G +E G W H  +      ID      S +ID+  + G +++A+
Sbjct: 272 PNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLG--SALIDMYSKCGIIEKAI 329

Query: 429 KLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            +   +P E + +TW A++    +H     AI
Sbjct: 330 HVFERLPRE-NVITWSAMINGFAIHGQAGDAI 360



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 146/334 (43%), Gaps = 52/334 (15%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V  +  T+  ++K C     ++E K +H   L  GF  + F+++ L+ M+V    +++A+
Sbjct: 124 VEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDAR 183

Query: 130 VLF---------------------------------------------DQMPERNVVSWT 144
           VLF                                             D+M +R+VVSW 
Sbjct: 184 VLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWN 243

Query: 145 TMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKV 201
           TMIS Y        A+E+   M +  +RPN  T  +VL A     SL +   LH      
Sbjct: 244 TMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDS 303

Query: 202 GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLY 261
           G   D  + SALID+Y+K G +  A  VF  +P  +++ W+++I GFA +    +A++ +
Sbjct: 304 GIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCF 363

Query: 262 KRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH---DLILNNALLDMYCK 318
            +M++AG         ++L AC+   L+E G +    ++  D     +     ++D+  +
Sbjct: 364 CKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGR 423

Query: 319 CGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNG 351
            G L++A      M I+ D + W  ++      G
Sbjct: 424 SGLLDEAEEFILNMPIKPDDVIWKALLGACRMQG 457



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 98/203 (48%), Gaps = 5/203 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+   +R + VT   ++       ++E  + +H +    G   +  L + L++
Sbjct: 258 AVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALID 317

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K  ++E+A  +F+++P  NV++W+ MI+ +        A++    M + GVRP+   
Sbjct: 318 MYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA 377

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKV-GFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           Y  +L AC    ++   R+    ++ V G E  +     ++D+  + G L  AE     M
Sbjct: 378 YINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNM 437

Query: 234 PTR-DLVVWNSIIGGFAQNSDVD 255
           P + D V+W +++G      +V+
Sbjct: 438 PIKPDDVIWKALLGACRMQGNVE 460


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/648 (37%), Positives = 362/648 (55%), Gaps = 42/648 (6%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RNS S     + +  + D   A     +MQ  G+           +  +      + + V
Sbjct: 267 RNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRKGREV 326

Query: 97  HNHVLSGGFEPETFLV-NILLNMHVK----------FSLL-------------------- 125
           H HV+  G       + N L+NM+ K          F L+                    
Sbjct: 327 HAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNEC 386

Query: 126 -EEAQVLFDQMPERNVVSWTTMISAYCDAKMN-DKALELLIFMLREGVRPNMFTYSAVLR 183
            E+A  +F  MPE + VSW ++I A  D++ +  +A++  + M+R G   +  T+  +L 
Sbjct: 387 SEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILS 446

Query: 184 ACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP-TRDLV 239
           A  SL    +  Q+H  ++K     D  + +AL+  Y K GE+   E +F  M  TRD V
Sbjct: 447 AVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEV 506

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
            WNS+I G+  N  + +A++L   M + G   D  T  ++L AC  +A LE G +VH   
Sbjct: 507 SWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACG 566

Query: 300 LK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           ++   + D+++ +AL+DMY KCG ++ A   F  M  ++V SW++MISG A++G+ ++AL
Sbjct: 567 IRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKAL 626

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
           KLF  M +    P+++T VGVL ACSH GFVE+G+ HFKSM + Y + P  EH+SCM+DL
Sbjct: 627 KLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDL 686

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC--KVHRNTDLAICAAKKILNLDPQDPG 475
           LGRAGKL E    I+ MP +P+ + WR +LGAC     RNT+L   AA+ +L L+PQ+  
Sbjct: 687 LGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAV 746

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
            Y+LL+N+YA+ +KW++VA+ R  M+   + KE GCSW+ +   +H F   D  HP+ D 
Sbjct: 747 NYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDL 806

Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
           I   L+ L +K+   GY P T Y L DLE E KE+ + YHSEK+A+ F +++      IR
Sbjct: 807 IYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAF-VLTRQSALPIR 865

Query: 596 IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           I KNLR+CGDCH+     +K+  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 866 IMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 913



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 159/306 (51%), Gaps = 19/306 (6%)

Query: 72  ADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVL 131
           + S T+  LI         EEA+ +H   +  GF    FL N L+N++V+   L  AQ L
Sbjct: 97  SSSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKL 156

Query: 132 FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC-----D 186
           FD+M  RN+V+W  +IS Y      D+A      M+R G  PN + + + LRAC      
Sbjct: 157 FDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPS 216

Query: 187 SLIILRQLHCGIIKVGFESDVFVRSALIDIYAK-LGELRNAECVFNEMPTRDLVVWNSII 245
              +  Q+H  I K  + SDV V + LI +Y   L    +A  VF+ +  R+ + WNSII
Sbjct: 217 GCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSII 276

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFA-----ADQSTLTSVLRACTGLALLELGTQVHVHVL 300
             +++  D   A +L+  M++ G        D  +  SVL           G +VH HV+
Sbjct: 277 SVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGR-----RKGREVHAHVI 331

Query: 301 KY---DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           +    D+ + + N L++MY K G++ DA SVF  M++KD +SW+++ISGL QN  S++A 
Sbjct: 332 RTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAA 391

Query: 358 KLFESM 363
           ++F  M
Sbjct: 392 EMFSLM 397



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 146/283 (51%), Gaps = 46/283 (16%)

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           R+LH   IK GF  ++F+ + LI+IY ++G+L +A+ +F+EM  R+LV W  +I G+ QN
Sbjct: 119 RELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQN 178

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRAC--TGLALLELGTQVH--VHVLKYDHDLI 307
              DEA   ++ M RAGF  +     S LRAC  +G +  +LG Q+H  +   +Y  D++
Sbjct: 179 GKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVV 238

Query: 308 LNNALLDMYCKC-GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
           + N L+ MY  C  S  DA SVF  +  ++ ISW+++IS  ++ G +  A  LF SM+  
Sbjct: 239 VCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKE 298

Query: 367 RI----KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS---------- 412
            +    KPN                  D ++ F  +++  G   GRE ++          
Sbjct: 299 GLGFSFKPN------------------DAFSEFSVLEE--GRRKGREVHAHVIRTGLNDN 338

Query: 413 ------CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
                  ++++  ++G + +A   + E+  E D+V+W +L+  
Sbjct: 339 KVAIGNGLVNMYAKSGAIADACS-VFELMVEKDSVSWNSLISG 380



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 21/224 (9%)

Query: 36  TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL 95
           TR+  S     + + +   L +AM  +  M   G R DS T+A ++  C +   +E    
Sbjct: 502 TRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGME 561

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           VH   +    E +  + + L++M+ K   ++ A   F+ MP RNV SW +MIS Y     
Sbjct: 562 VHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGH 621

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFE-----SDVFVR 210
            +KAL+L   M+ +G  P+  T+  VL AC         H G ++ GFE     S+V+  
Sbjct: 622 GEKALKLFTRMMLDGQPPDHVTFVGVLSACS--------HVGFVEEGFEHFKSMSEVYRL 673

Query: 211 -------SALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIG 246
                  S ++D+  + G+L       N MP + ++++W +++G
Sbjct: 674 SPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLG 717


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/530 (40%), Positives = 325/530 (61%), Gaps = 12/530 (2%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMI-----SAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
           L  A+ +FD++P    V W   +              ++A  + + M+ EGV P+ +T+ 
Sbjct: 83  LAYARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFV 142

Query: 180 AVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           ++L+AC S       RQ H   +K G     +V   LI++YA+ G++R A  +F+ M   
Sbjct: 143 SLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGE 202

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
            +V +N++I    ++S   EAL L++ M+  G      TL SVL AC  L  LELG  +H
Sbjct: 203 CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIH 262

Query: 297 VHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
            ++  ++ D  + +N AL+DMY KCGSLEDA+ VF  M  +D  +WS M+   A +GY +
Sbjct: 263 DYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGR 322

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414
           EA+ +FE MK   +KP+ +T +GVL+ACSH+G V +G  +F SM++ YGI  G +HY C+
Sbjct: 323 EAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIVSGIKHYGCV 381

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474
            DLL R+G+L+ A K I E+P +P A+ WR LL AC  H + D+     ++IL LD    
Sbjct: 382 TDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHG 441

Query: 475 GTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQID 534
           G Y++ SN+ AN+ +W+E+  VRK M  +G+ K PGCS IE++  +H F   D SHP   
Sbjct: 442 GDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQ 501

Query: 535 KINKHLKHLIQKLVGVGYAPDTNYVLQ-DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT 593
           +  + +  +I++L  VGY P+T++V   ++  E+K  S++YHSEKLAI FGL++   G T
Sbjct: 502 EARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTT 561

Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +RI KNLR+C DCH+ AKL + + N+ I++RD  R+HHF+DG CSCGDYW
Sbjct: 562 LRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 152/303 (50%), Gaps = 6/303 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   GV  D+ T+  L+K C +  A EE +  H   +  G     ++   L+NM+ +   
Sbjct: 129 MMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGD 188

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +  A+V+FD+M    VVS+  MI+A   + +  +AL L   M  +G++P   T  +VL A
Sbjct: 189 VRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSA 248

Query: 185 C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C    +L + R +H  I K+  +S V V +ALID+YAK G L +A  VF +M +RD   W
Sbjct: 249 CALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAW 308

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           + ++  +A +    EA+++++ MK+ G   D  T   VL AC+   ++  G Q    + +
Sbjct: 309 SVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMRE 368

Query: 302 YD--HDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALK 358
           Y     +     + D+  + G LE A      + I+   I W T++S  A +G      +
Sbjct: 369 YGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKR 428

Query: 359 LFE 361
           +FE
Sbjct: 429 VFE 431



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 160/355 (45%), Gaps = 30/355 (8%)

Query: 180 AVLRACDSLIILRQLHCGIIKV--GFESDVFVRSALIDIYAKLG-----ELRNAECVFNE 232
           A L  C SL  L QLH   +K   G ++     + L+ +  + G      L  A  VF+ 
Sbjct: 33  AYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDR 92

Query: 233 MPTRDLVVW-NSII----GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
           +P    VVW N+++     G       +EA  ++ RM   G A D  T  S+L+AC    
Sbjct: 93  IPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACASAR 152

Query: 288 LLELGTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
             E G Q H   +K    +H+ +    L++MY +CG +  A  +F RM  + V+S++ MI
Sbjct: 153 AGEEGRQAHGVAVKAGAAEHEYVAPT-LINMYAECGDVRAARVMFDRMDGECVVSYNAMI 211

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNH--FKSMKKF 401
           +   ++    EAL LF  M+   +KP  +T++ VL AC+  G +E G W H   + M+  
Sbjct: 212 TASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMR-- 269

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
             +D   +  + +ID+  + G L++A+ +  +M    D   W  ++ A   H     AI 
Sbjct: 270 --LDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESR-DKQAWSVMMVAYANHGYGREAIS 326

Query: 462 AAKKILNLDPQDPGTYILLSNIYANSQKW--DEVAEVRKTMRARGIT---KEPGC 511
             ++ +      P     L  +YA S      E  +   +MR  GI    K  GC
Sbjct: 327 MFEE-MKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGC 380


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/571 (37%), Positives = 334/571 (58%), Gaps = 40/571 (7%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR-EGV 171
           N++++++     +E A  +F+ M ER++VSW T+I+ Y    ++  AL+    ML    +
Sbjct: 417 NVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSM 476

Query: 172 RPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAK--------- 219
            P+ FT ++VL AC +L +L+   Q+H  I++ G      + +ALI  YAK         
Sbjct: 477 EPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARR 536

Query: 220 ------------------------LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
                                   LG+ + A  +F+ M  RD++ W ++I G+ QN   D
Sbjct: 537 IMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQND 596

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
           EA+ L++ M   G   +  TL +VL AC  LA L+ G Q+H   ++   +  + ++NA++
Sbjct: 597 EAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAII 656

Query: 314 DMYCKCGSLEDAMSVFSRMI-QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
            +Y + GS+  A  VF ++  +K+ I+W++MI  +AQ+G  ++A+ LFE M    +KP++
Sbjct: 657 TVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDH 716

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           IT VGVL AC+HAGFV+ G  +++ M+  +GI P   HY+CM+DL  RAG L EA + I 
Sbjct: 717 ITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQ 776

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
            MP  PD V W +LL AC+V +N DLA  AA K+L++DP + G Y  L+N+Y+   +W++
Sbjct: 777 RMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWND 836

Query: 493 VAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGY 552
            A + K  + +G+ KE G SW  V  ++H F   D  HPQ D I +    + +++   G+
Sbjct: 837 AARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMWEEIKKAGF 896

Query: 553 APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
            PD N VL D++ E KE+ +  HSEKLAI FGL+S  +  T+RI KNLR+C DCHT  K 
Sbjct: 897 VPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKF 956

Query: 613 TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +K  ++ I++RD  R+HHF+DG CSC DYW
Sbjct: 957 ISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 129/477 (27%), Positives = 217/477 (45%), Gaps = 86/477 (18%)

Query: 56  PRAMKAMHAMQCHGVRADSVTYAELIKCCLARHA--------VEEAKLVHNHVLSGGFEP 107
           P A +A+HA   H V+A  +    L    LA +A          EA+ + + +       
Sbjct: 225 PSAGRAIHA---HAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDIPYA--RR 279

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
             F  N LL+++ K   L +A V+F +MP+R+ VSWT MI     +     A++  + M+
Sbjct: 280 NAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMV 339

Query: 168 REGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
            EG  P+ FT + VL +C ++    + R++H  ++K+G  S V V ++++ +Y K G+  
Sbjct: 340 SEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAE 399

Query: 225 NAECVFNEMPT-------------------------------RDLVVWNSIIGGFAQNSD 253
            A  VF  M                                 R +V WN+II G+ QN  
Sbjct: 400 TARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGL 459

Query: 254 VDEALNLYKRMKRA-GFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY---------- 302
              AL  + RM  A     D  T+TSVL AC  L +L++G Q+H ++L+           
Sbjct: 460 DGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMN 519

Query: 303 -------------------------DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
                                    D ++I   ALL+ Y K G  + A  +F  M  +DV
Sbjct: 520 ALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDV 579

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFK 396
           I+W+ MI G  QNG + EA++LF SM +   +PN  T+  VL AC+   +++ G   H K
Sbjct: 580 IAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCK 639

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           +++     +      + +I +  R+G +  A ++  ++ +  + +TW +++ A   H
Sbjct: 640 AIRSLQ--EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQH 694



 Score = 38.9 bits (89), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSG-GFEPETFLVNILLNMHVKFSLLEE 127
           GV+ D +TY  ++  C     V++ K  +  + +  G  P+      ++++H +  LL E
Sbjct: 711 GVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTE 770

Query: 128 AQVLFDQMP-ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSA---VLR 183
           A     +MP   + V W ++++A C  + N    EL    L      N   YSA   V  
Sbjct: 771 AHEFIQRMPVAPDTVVWGSLLAA-CRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYS 829

Query: 184 AC 185
           AC
Sbjct: 830 AC 831


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/692 (33%), Positives = 376/692 (54%), Gaps = 79/692 (11%)

Query: 28  PVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLAR 87
           PVA  +T+  N+  ++  F R           +++ A     +R D  ++  L+      
Sbjct: 116 PVARRDTVLHNA--MISAFARASLAAPAVSVFRSLLASD-DSLRPDDYSFTSLLSAVGQM 172

Query: 88  H--AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF---SLLEEAQVLFDQMPERNVVS 142
           H  AV     +H  V   G      + N L+ +++K     +  +A+ + D+MPE++ ++
Sbjct: 173 HDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELT 232

Query: 143 WTT-------------------------------MISAYCDAKMNDKALELLIFMLREGV 171
           WTT                               MIS Y  + M  +A EL   M+ + +
Sbjct: 233 WTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRI 292

Query: 172 RPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGF----ESDVFVRSALIDIYAKLGELR 224
            P+ FT++++L AC +       + +H   I++      E+ + V +AL+ +Y+K G++ 
Sbjct: 293 PPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIA 352

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK---------------RAGF 269
            A  +F+ M  +D+V WN+I+ G+ ++  +D A  ++K M                  G 
Sbjct: 353 VATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGL 412

Query: 270 AADQSTLTSVLR----------------ACTGLALLELGTQVHVHVLK--YDHDLILNNA 311
           A D   L + +R                AC  L  L+ G Q+H H+++  ++      NA
Sbjct: 413 AEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNA 472

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           LL MY +CG+++DA  VF  M   D +SW+ MIS L Q+G+ +EAL+LF+ M    I P+
Sbjct: 473 LLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPD 532

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            I+ + +L AC+HAG V+DG+ +F+SM++ +GI PG +HY+ +IDLLGRAG++ EA  LI
Sbjct: 533 RISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLI 592

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
             MP+EP    W A+L  C+++ + +L   AA ++  + P+  GTYILLSN Y+ + +W 
Sbjct: 593 KTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWV 652

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
           + A VRK MR RG+ KEPGCSWIEV  ++H F V D+ HP   ++ + L+ +  K+  +G
Sbjct: 653 DAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLG 712

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           Y PDT + LQD+   +KE  +  HSE+LA+ FGL+ L  G T+ + KNL+ICGDCHT   
Sbjct: 713 YVPDTKFALQDMAPHEKEYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHTAMM 772

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             ++   + IV+RD  R+HHF+DG CSCG+YW
Sbjct: 773 FMSRAVGREIVVRDVRRFHHFKDGECSCGNYW 804


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/571 (37%), Positives = 333/571 (58%), Gaps = 40/571 (7%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR-EGV 171
           N +++++     ++ A  +F+ M ER++VSW  +I+ Y    ++D AL+    ML    +
Sbjct: 233 NAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSM 292

Query: 172 RPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAK--------- 219
            P+ FT ++VL AC +L +L+   Q+H  I++ G      + +ALI  YAK         
Sbjct: 293 EPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARR 352

Query: 220 ------------------------LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
                                   LG+ + A  VF+ M  RD++ W ++I G+ QN   D
Sbjct: 353 IMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQND 412

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
           EA+ L++ M R+G   +  TL +VL AC  LA L  G Q+H   ++   +  + ++NA++
Sbjct: 413 EAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAII 472

Query: 314 DMYCKCGSLEDAMSVFSRMI-QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
            +Y + GS+  A  VF ++  +K+ ++W++MI  LAQ+G  ++A+ LFE M    +KP+ 
Sbjct: 473 TVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDR 532

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           +T +GV  AC+HAGF++ G  +++ M   +GI P   HY+CM+DLL RAG L EA + I 
Sbjct: 533 VTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQ 592

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
            MP  PD V W +LL AC+V +N DLA  AA+K+L++DP + G Y  L+N+Y+   +W++
Sbjct: 593 RMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWND 652

Query: 493 VAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGY 552
            A + K  + + + KE G SW  V  ++H F   D  HPQ D I K    + +++   G+
Sbjct: 653 AARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMWEEIKKAGF 712

Query: 553 APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
            PD N VL D++ E KE+ +  HSEKLAI FGL+S  +  T+RI KNLR+C DCHT  K 
Sbjct: 713 VPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKF 772

Query: 613 TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +K+ ++ I++RD  R+HHF+DG CSC DYW
Sbjct: 773 ISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 143/503 (28%), Positives = 233/503 (46%), Gaps = 87/503 (17%)

Query: 56  PRAMKAMHAMQCHGVRADSVTYAELIKCCLARHA--------VEEAKLVHNHVLSGGFEP 107
           P A +A+HA   H V+A  +  A L    L+ +A          EA+ + + +       
Sbjct: 41  PSAGRAIHA---HAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYA--RR 95

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
             F  N LL+M+ K   L +A+V+F QMPER+ VSWT M+     A     A++  + M+
Sbjct: 96  NAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV 155

Query: 168 REGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
            EG+ P+ F  + VL +C   ++  I R++H  +IK+G  S V V ++++ +Y K G+  
Sbjct: 156 GEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAE 215

Query: 225 NAECVFNEMPT-------------------------------RDLVVWNSIIGGFAQNSD 253
            A  VF  M                                 R +V WN+II G+ QN  
Sbjct: 216 TARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGL 275

Query: 254 VDEALNLYKRMKRA-GFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY---------- 302
            D AL  + RM  A     D+ T+TSVL AC  L +L++G Q+H ++L+           
Sbjct: 276 DDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMN 335

Query: 303 -------------------------DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
                                    D ++I   ALL+ Y K G  + A  VF  M  +DV
Sbjct: 336 ALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDV 395

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFK 396
           I+W+ MI G  QNG + EA++LF SM  S  +PN  T+  VL AC+   ++  G   H +
Sbjct: 396 IAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCR 455

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
           +++     +      + +I +  R+G +  A ++  ++ +  + VTW +++ A   H   
Sbjct: 456 AIRSLQ--EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLG 513

Query: 457 DLAICAAKKILNLDPQ-DPGTYI 478
           + AI   +++L +  + D  TYI
Sbjct: 514 EQAIVLFEEMLRVGVKPDRVTYI 536


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/536 (38%), Positives = 334/536 (62%), Gaps = 5/536 (0%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N +++ + +   +EE   LF++MP R+V+SWT+MI        +++AL +   MLR GV 
Sbjct: 140 NAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVE 199

Query: 173 PNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P   T++ VL AC + +      Q+H  ++K+G     F+  +LI  YA   ++ +A  +
Sbjct: 200 PTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKI 259

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           FNE  T+++V W +++  +  N+   +AL ++  M + G   +QST +  L+AC GL  L
Sbjct: 260 FNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEAL 319

Query: 290 ELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
           + G ++H   +K   + D+ + N+L+ MY +CG++  A++VF  + +KD++SW+++I G 
Sbjct: 320 DKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGS 379

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
           AQ+G+   AL  F  M    + PN IT  G+L ACS +G +  G   F+ + ++      
Sbjct: 380 AQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLR 439

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            +HY+CM+D+LGR GKL EA +L+  MP + +++ W ALL AC+VH N ++A  AAK IL
Sbjct: 440 PQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVAERAAKHIL 499

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
           +L+P     Y+LLSNIYA++ +W +V+ +R  M+  G+ K+PG SW+ +  + H F  AD
Sbjct: 500 DLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGKKHEFLSAD 559

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
            SHP  ++I + L  L +KL   GY PD  + L D+E EQKE+ + +HSE+LAI FGL+S
Sbjct: 560 RSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDEQKEEMLSFHSERLAIAFGLVS 619

Query: 588 LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             +G TI + KNLR+CGDCH+  KL +K+  + IV+RD  R+HHF++G CSC DYW
Sbjct: 620 TVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGRFHHFKNGICSCSDYW 675



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 148/332 (44%), Gaps = 42/332 (12%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L  A  LFD+MPE+NV+SWTTM++ Y      + A  L +                    
Sbjct: 90  LGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFL-------------------- 129

Query: 185 CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
                    +H          DV   +A++  Y + G +     +F EMP RD++ W S+
Sbjct: 130 --------DMHV--------KDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSM 173

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--- 301
           IGG   N   +EAL ++K+M R+G     ST   VL AC       LG QVH HV+K   
Sbjct: 174 IGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGC 233

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
           + H+ I + +L+  Y  C  +E A  +F+  + K+V+ W+ +++    N   Q+AL++F 
Sbjct: 234 FFHEFI-SVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFG 292

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            M      PN  T    L AC     ++ G     +M    G++      + ++ +    
Sbjct: 293 DMTKMGALPNQSTFSITLKACCGLEALDKG-KEIHTMAIKLGLETDVFVGNSLVVMYTEC 351

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           G +  AV +   +  E D V+W +++     H
Sbjct: 352 GNVNSAVAVFRNIN-EKDIVSWNSIIVGSAQH 382



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 108/229 (47%), Gaps = 5/229 (2%)

Query: 34  TITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEA 93
           T+T+N        T + +      A++    M   G   +  T++  +K C    A+++ 
Sbjct: 263 TLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKG 322

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
           K +H   +  G E + F+ N L+ M+ +   +  A  +F  + E+++VSW ++I      
Sbjct: 323 KEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQH 382

Query: 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVG-FESDVFV--- 209
                AL     M+R GV PN  T++ +L AC    +L +  C    +  ++S+V     
Sbjct: 383 GFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQH 442

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
            + ++DI  + G+L  AE +   MP + + ++W +++     +S+++ A
Sbjct: 443 YACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVA 491


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/546 (39%), Positives = 333/546 (60%), Gaps = 7/546 (1%)

Query: 104 GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY-CDAKMNDKALEL 162
           GF     L+  L+++  K   +E A++LF ++ +++++S   MIS + C+ +  D ++ L
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETED-SVRL 119

Query: 163 LIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
              +L  G R +  T   ++          +   +H   +K+G  S   V +AL  +Y +
Sbjct: 120 FKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCR 179

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
           L E+  A  +F+E   + L  WN++I G  QN   D A++L++ M++     +  T+TS+
Sbjct: 180 LNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSI 239

Query: 280 LRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
           L AC  +  L LG  VH  +   +++ ++ ++ AL+DMY KCGS+  A  +F  M +K+ 
Sbjct: 240 LSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNE 299

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           ++W+ MISG   +G+ QEALKLF  M  S +KP  +T + VL+ACSHAG V++G   F +
Sbjct: 300 VTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHT 359

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457
           M   +G +P  EHY+CM+D+LGRAG+L++A++ I  MP EP    W ALLGAC +H++T+
Sbjct: 360 MVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTN 419

Query: 458 LAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVN 517
           LA  A++K+  LDP++ G Y+L+SNIY+  +K+ + A VR+  + + + K PGC+ IE+ 
Sbjct: 420 LAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIG 479

Query: 518 KQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSE 577
           +  H F   D SHPQ   I   L  L  K+   G+  +T  VL DLE E+KE +++ HSE
Sbjct: 480 QVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSE 539

Query: 578 KLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNC 637
           KLAI FGL+S   G  IRI KNLR+C DCH + K  +K+  + IV+RD  R+HHF+DG C
Sbjct: 540 KLAIAFGLISTEPGAEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGLC 599

Query: 638 SCGDYW 643
           SCGDYW
Sbjct: 600 SCGDYW 605



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 172/351 (49%), Gaps = 13/351 (3%)

Query: 146 MISAYCDAKMNDKALELLIFM-LREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKV 201
           MIS +      + ++ +   M L  G R ++ T  AVL A   L  L+   Q+ C  IK 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 202 GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLY 261
           GF S V + + LI +++K GE+  A  +F E+  +DL+  N++I GF  N + ++++ L+
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 262 KRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY---DHDLILNNALLDMYCK 318
           K +  +G     ST+  ++   +      L   +H   +K     H  + + AL  +YC+
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSV-STALTTVYCR 179

Query: 319 CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
              +  A  +F    +K + SW+ MISG  QNG +  A+ LF++M+ + + PN +T+  +
Sbjct: 180 LNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSI 239

Query: 379 LFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           L AC+  G +  G W H  S+ K    +      + +ID+  + G +  A +L   MP E
Sbjct: 240 LSACAQIGALSLGEWVH--SLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMP-E 296

Query: 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
            + VTW A++    +H +   A+     +L+     P     LS +YA S 
Sbjct: 297 KNEVTWNAMISGYGLHGHGQEALKLFYDMLS-SSVKPTGLTFLSVLYACSH 346



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 125/256 (48%), Gaps = 7/256 (2%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H   +  G    + +   L  ++ + + +  A+ LFD+  E+ + SW  MIS      +
Sbjct: 154 IHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGL 213

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSA 212
            D A+ L   M +  V PN  T +++L AC    +L +   +H  I    FES+V+V +A
Sbjct: 214 TDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTA 273

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           LID+YAK G +  A  +F+ MP ++ V WN++I G+  +    EAL L+  M  +     
Sbjct: 274 LIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPT 333

Query: 273 QSTLTSVLRACTGLALLELGTQV-HVHVLKYDHDLILNN--ALLDMYCKCGSLEDAMSVF 329
             T  SVL AC+   L++ G  + H  V  +  + +  +   ++D+  + G L+ A+   
Sbjct: 334 GLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFI 393

Query: 330 SRM-IQKDVISWSTMI 344
             M ++     W  ++
Sbjct: 394 KAMPVEPGPPVWGALL 409



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 100/214 (46%), Gaps = 6/214 (2%)

Query: 50  CYQRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           C Q  L   A+     MQ + V  + VT   ++  C    A+   + VH+ + S  FE  
Sbjct: 208 CTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESN 267

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            ++   L++M+ K   +  A+ LFD MPE+N V+W  MIS Y       +AL+L   ML 
Sbjct: 268 VYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLS 327

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
             V+P   T+ +VL AC    ++++     H  +   GFE      + ++DI  + G+L+
Sbjct: 328 SSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLK 387

Query: 225 NAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
            A      MP      VW +++G    + D + A
Sbjct: 388 KALEFIKAMPVEPGPPVWGALLGACMIHKDTNLA 421


>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
 gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
          Length = 653

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/632 (36%), Positives = 358/632 (56%), Gaps = 38/632 (6%)

Query: 50  CYQRD--LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY ++     A++    M    +  D+ T + ++  C     VEE ++V       GFE 
Sbjct: 22  CYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEK 81

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPE-RNVVSWTTMISAYCDAKMNDKAL------ 160
           +  +   L+++  K   LEEA+ +F  M   R+++S T MI AYC +  + K+L      
Sbjct: 82  DVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYCGSLKDSKSLFLTMDV 141

Query: 161 -----------------------ELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQL 194
                                   L   M   G  P+++T+S++L AC S   L   R L
Sbjct: 142 KDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRML 201

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
           H  I   GF+ D  +++ LI +Y + G L +A   F  +  ++L  WN+++  +AQ    
Sbjct: 202 HVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKG 261

Query: 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNAL 312
            +AL LYK M   GF  D+ T +SV+ +C  L  L  G  +H       ++ D+IL  AL
Sbjct: 262 KDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTAL 321

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           ++MY KCGSL DA   F  +  KDV+SWS MI+  AQ+G+++EAL+L   M +  I  N 
Sbjct: 322 VNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNE 381

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           +T   VL ACSH G + +G ++F  + + +GI+   E+    IDLLGRAG L+EA  ++H
Sbjct: 382 VTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLH 441

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
            MP++   V    LLG CKVH +        K+I+ L+P++PG+Y+LL+N+YA + +WD+
Sbjct: 442 TMPFKVSFVALVTLLGGCKVHGDVRRGKAFTKRIVALEPENPGSYVLLNNMYAAAGRWDD 501

Query: 493 VAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLV-GVG 551
           VA++R+ MR +G+ ++ GCS IE   +I+ F+V D+S+P+  +I   L+ L  ++    G
Sbjct: 502 VAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELERLYSRMKEEEG 561

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           Y PDT  V  D+  ++KE+ +++HSEK+A+ FGL++   G T+RI KNLR+C DCHT  K
Sbjct: 562 YVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLITSPPGSTLRIIKNLRVCSDCHTVGK 621

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L +K+  + I++RD  R+HHF+ G CSCGDYW
Sbjct: 622 LASKITGRRIIVRDGTRFHHFEGGICSCGDYW 653



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 177/368 (48%), Gaps = 37/368 (10%)

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A+ +FD++ +RN  SW+ ++  Y    M  +ALE+   M+RE +  + +T S+VL AC  
Sbjct: 1   ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTK 60

Query: 188 LIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE------------ 232
           L+ +   R +     ++GFE DV V ++LI ++AK G L  AE VF              
Sbjct: 61  LLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTA 120

Query: 233 ------------------MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
                             M  +D+V WN++I  +       +A +L+ RM   G   D  
Sbjct: 121 MIGAYCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIY 180

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           T +S+L AC     LE G  +HV +    +D D  + N L+ MY +CGSLE A   F  +
Sbjct: 181 TFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFYSI 240

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
            +K++ +W+TM++  AQ    ++AL L+++M +    P+  T   V+ +C+  G + +G 
Sbjct: 241 EKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREG- 299

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
                     G +      + ++++  + G L +A K    +    D V+W A++ A   
Sbjct: 300 KFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGIS-NKDVVSWSAMIAASAQ 358

Query: 453 HRNTDLAI 460
           H + + A+
Sbjct: 359 HGHAEEAL 366



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 187/398 (46%), Gaps = 39/398 (9%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++  +T + + +D   A    H M   G   D  T++ ++  C +   +E+ +++H  
Sbjct: 148 NAMIAAYTLYGHDKD---AFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVR 204

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           + + GF+ +  + N L++M+ +   LE A+  F  + ++ + +W TM++AY        A
Sbjct: 205 ITARGFDRDFAMQNNLISMYTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDA 264

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDI 216
           L L   ML EG  P+ FT+S+V+ +C SL  LR+   +H      GFE DV + +AL+++
Sbjct: 265 LFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNM 324

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           YAK G L +A+  F+ +  +D+V W+++I   AQ+   +EAL L   M   G A ++ T 
Sbjct: 325 YAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTA 384

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD 336
           +SVL AC+    L  G     + +    D                           I++D
Sbjct: 385 SSVLHACSHGGRLYEGID---YFMGLSQDF-------------------------GIERD 416

Query: 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
             +    I  L + G+ +EA  +  +M     K +++ +V +L  C   G V  G    K
Sbjct: 417 EENTVGFIDLLGRAGWLKEAEHVLHTMP---FKVSFVALVTLLGGCKVHGDVRRGKAFTK 473

Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
            +      +PG   Y  + ++   AG+  +  KL   M
Sbjct: 474 RIVALEPENPG--SYVLLNNMYAAAGRWDDVAKLRRYM 509


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/618 (36%), Positives = 344/618 (55%), Gaps = 52/618 (8%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   GVR DS TY   +  C    ++   K +H  V+      + ++ + ++ ++ K   
Sbjct: 285 MHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGC 344

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            +EA+ +F  + +RN VSWT +I  +       ++LEL   M  E +  + F  + ++  
Sbjct: 345 FKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISG 404

Query: 185 CDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV-- 239
           C +   + + RQLH   +K G    V + ++LI +YAK G L+NAE +F+ M  RD+V  
Sbjct: 405 CSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSW 464

Query: 240 -----------------------------VWNSIIGGFAQNSDVDEALNLYKRM-KRAGF 269
                                         WN+++G + Q+   ++ L +Y  M      
Sbjct: 465 TGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDV 524

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDA 325
             D  T  ++ R C  +   +LG Q+  H +K    LIL+    NA++ MY KCG + +A
Sbjct: 525 IPDWVTYVTLFRGCADMGANKLGDQITGHTVKVG--LILDTSVMNAVITMYSKCGRISEA 582

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F  + +KD++SW+ MI+G +Q+G  ++A+++F+ M     KP+YI+ V VL +CSH+
Sbjct: 583 RKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHS 642

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G V++G  +F  +K+ + + PG EH+SCM+DLL RAG L EA  LI EMP +P A  W A
Sbjct: 643 GLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGA 702

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LL ACK H N +LA  AAK + +LD  D G Y+LL+ IYA++ K  + A+VRK MR +GI
Sbjct: 703 LLSACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGI 762

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            K PG SW+EV  ++H F   D SHPQ+  I + L  L++K+  +GY          +  
Sbjct: 763 KKNPGYSWMEVKNKVHVFKAEDVSHPQVIAIREKLDELMEKIAQLGY----------VRT 812

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           E     I +HSEKLA+ FG+M+L     I I KNLRICGDCHT  KL + +  +  VIRD
Sbjct: 813 ESLRSEI-HHSEKLAVAFGIMNLPAWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRD 871

Query: 626 PIRYHHFQDGNCSCGDYW 643
            +R+HHF+ G+CSCGDYW
Sbjct: 872 AVRFHHFKGGSCSCGDYW 889



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 162/297 (54%), Gaps = 9/297 (3%)

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
           P  F  N +L  + K   ++ A  LF+ MPER+VVSW  M+SA   +    +AL + + M
Sbjct: 226 PTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDM 285

Query: 167 LREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
              GVR +  TY++ L AC  L  L   +QLH  +I+     D +V SA++++YAK G  
Sbjct: 286 HNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCF 345

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           + A  VF+ +  R+ V W  +IGGF Q     E+L L+ +M+      DQ  L +++  C
Sbjct: 346 KEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGC 405

Query: 284 TGLALLELGTQVHVHVLKYDHD--LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
           +    + L  Q+H   LK  H   ++++N+L+ MY KCG+L++A S+FS M ++D++SW+
Sbjct: 406 SNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWT 465

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
            M++  +Q G   +A + F+ M       N IT   +L A    G  EDG   + +M
Sbjct: 466 GMLTAYSQVGNIGKAREFFDGMSTR----NVITWNAMLGAYIQHGAEEDGLKMYSAM 518



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 191/423 (45%), Gaps = 53/423 (12%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGF------------EPETFLVNILLNMHVKFSL 124
           +  L+   LA     +  L+H ++  G              EP     NI++N + K   
Sbjct: 51  HGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGS 110

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLR 183
           L +A+ LF +MP R+V SW T++S Y  +     A+E  + M R G   PN FT+   ++
Sbjct: 111 LSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMK 170

Query: 184 ACDSLI---ILRQLHCGIIKVGFESD-------------------------------VFV 209
           +C +L    +  QL   + K GF+ D                               VF 
Sbjct: 171 SCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFC 230

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
           R++++  YAK   + +A  +F  MP RD+V WN ++   +Q+    EAL++   M   G 
Sbjct: 231 RNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGV 290

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMS 327
             D +T TS L AC  L+ L  G Q+H  V++     D  + +A++++Y KCG  ++A  
Sbjct: 291 RLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARR 350

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH-AG 386
           VFS +  ++ +SW+ +I G  Q G   E+L+LF  M+   +  +   +  ++  CS+   
Sbjct: 351 VFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMD 410

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
                  H  S+K   G        + +I +  + G LQ A  +   M  E D V+W  +
Sbjct: 411 MCLARQLHSLSLKS--GHTRAVVISNSLISMYAKCGNLQNAESIFSSME-ERDIVSWTGM 467

Query: 447 LGA 449
           L A
Sbjct: 468 LTA 470



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 164/364 (45%), Gaps = 49/364 (13%)

Query: 37  RNSSS---LLDDFTRF-CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEE 92
           RN+ S   L+  F ++ C+   L    +  + M+   +  D    A +I  C  R  +  
Sbjct: 358 RNTVSWTVLIGGFLQYGCFSESL----ELFNQMRAELMTVDQFALATIISGCSNRMDMCL 413

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
           A+ +H+  L  G      + N L++M+ K   L+ A+ +F  M ER++VSWT M++AY  
Sbjct: 414 ARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQ 473

Query: 153 AKMNDKALELL--------------------------------IFMLREGVRPNMFTYSA 180
                KA E                                    +  + V P+  TY  
Sbjct: 474 VGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVT 533

Query: 181 VLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           + R C  +   +   Q+    +KVG   D  V +A+I +Y+K G +  A  +F+ +  +D
Sbjct: 534 LFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKD 593

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           LV WN++I G++Q+    +A+ ++  M + G   D  +  +VL +C+   L++ G + + 
Sbjct: 594 LVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEG-KFYF 652

Query: 298 HVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRMIQKDVIS-WSTMISGLAQNGY 352
            +LK DH++       + ++D+  + G+L +A ++   M  K     W  ++S    +G 
Sbjct: 653 DMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGN 712

Query: 353 SQEA 356
           ++ A
Sbjct: 713 NELA 716



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 95/202 (47%), Gaps = 6/202 (2%)

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           ++I +N +++ Y K GSL DA  +F RM ++DV SW+T++SG  Q+G   +A++ F SM+
Sbjct: 94  NVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMR 153

Query: 365 VSRIK-PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
            S    PN  T    + +C   G+ E        + KF G     +  + ++D+  R G 
Sbjct: 154 RSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKF-GFQGDPDVATGIVDMFVRCGA 212

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           +  A K   ++   P      ++L         D A+   +   ++  +D  ++ ++ + 
Sbjct: 213 VDFASKQFSQIE-RPTVFCRNSMLAGYAKSYGVDHAL---ELFESMPERDVVSWNMMVSA 268

Query: 484 YANSQKWDEVAEVRKTMRARGI 505
            + S +  E   V   M  RG+
Sbjct: 269 LSQSGRAREALSVAVDMHNRGV 290


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/617 (34%), Positives = 354/617 (57%), Gaps = 17/617 (2%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEE--AKLVH 97
           +SLL  + R   + +    +K    M  HG+  +S     +IKCC +   V    A+ VH
Sbjct: 173 NSLLSGYVRAGAREE---TLKVFSLMCHHGLGWNSFALGSIIKCCASGSDVGRHIAEAVH 229

Query: 98  NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC------ 151
             V+  G + + FL + +++M+ K   L  A  LF  +P+ NV+ +  MI+ +C      
Sbjct: 230 GCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAV 289

Query: 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVF 208
             +++ +AL L   M   G++P+ FT+S++LRAC+        +Q+H  ++K  F  D +
Sbjct: 290 GKEVSREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDY 349

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           + SALID+Y+  G + +    F  +P +D+V W S+I G  QN   ++AL L++     G
Sbjct: 350 IGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESICYG 409

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNALLDMYCKCGSLEDAM 326
              D  T++SV+ AC  LA+   G Q+    +KY  +    + N+ + M  + G ++   
Sbjct: 410 LKPDLFTMSSVMNACASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVT 469

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
             F  M  +DV+SWS +IS  AQ+G +++AL++F  M  +++ PN +T + VL ACSH G
Sbjct: 470 RRFQEMESRDVVSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVLTACSHGG 529

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            V+DG  +++ MK  YG+ P  +H +C++DLLGRAG+L +A   I +  +  DAV WR+L
Sbjct: 530 LVDDGLRYYEIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSL 589

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           L +C++H + +     A +I++L+P    +Y++L N+Y ++ +    ++ R  M+ RG+ 
Sbjct: 590 LASCRIHGDMERGQLVADQIMDLEPTSSASYVILYNMYLDAGELSLASKTRDLMKERGVK 649

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           KEPG SWIE+   +H+F   D SHP+ + I K L  ++ K+  +    D      D    
Sbjct: 650 KEPGLSWIELRSGVHSFVAGDKSHPESNAIYKKLAEMLSKIEKLANT-DNASTGSDGISS 708

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
            +++ +  HSEK+A+ FG++ L Q   IR+ KNLR+C DCH+  KL +  EN+ I++RD 
Sbjct: 709 SEQNLVGCHSEKIAVAFGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISGSENREIILRDG 768

Query: 627 IRYHHFQDGNCSCGDYW 643
           IR+HHF+ G+CSCGDYW
Sbjct: 769 IRFHHFRGGSCSCGDYW 785



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 117/398 (29%), Positives = 199/398 (50%), Gaps = 15/398 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+R D  TYA  +  C     +   K VH   +  G     FL N L +M+     + EA
Sbjct: 98  GLRVDRFTYAAALAACSRALDLRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEA 157

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +FD   E + VSW +++S Y  A   ++ L++   M   G+  N F   ++++ C S 
Sbjct: 158 RRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASG 217

Query: 189 I-----ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
                 I   +H  ++K G ++D+F+ SA+ID+YAK G L NA  +F  +P  +++V+N+
Sbjct: 218 SDVGRHIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNA 277

Query: 244 IIGGFAQNSDV------DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           +I GF ++          EAL+LY  M+  G    + T +S+LRAC        G Q+H 
Sbjct: 278 MIAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHG 337

Query: 298 HVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
            VLK  +  D  + +AL+D+Y   G +ED    F  + ++D+++W++MISG  QN   ++
Sbjct: 338 QVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEK 397

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           AL+LF+      +KP+  T+  V+ AC+       G    + +   YG +      +  I
Sbjct: 398 ALRLFQESICYGLKPDLFTMSSVMNACASLAVARTG-EQIQCLAIKYGFNRFTAMGNSFI 456

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            +  R+G +    +   EM    D V+W A++ +   H
Sbjct: 457 HMCARSGDVDAVTRRFQEMESR-DVVSWSAVISSHAQH 493



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 196/395 (49%), Gaps = 31/395 (7%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLE--EAQVLFDQ 134
           Y +L++ C A   +     VH H+         FL N LL  + +  +     A  L D+
Sbjct: 5   YLDLLRSCTA---LPHVAAVHAHIARAHPTASLFLRNSLLAAYCRLGVGAPLHAARLIDE 61

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALE-LLIFMLREGVRPNMFTYSAVLRACDSLIILRQ 193
           MP RN VS+  +IS+Y  A +  +ALE         G+R + FTY+A L AC   + LR 
Sbjct: 62  MPRRNAVSYNLLISSYSRAGLPGRALETFARARAAAGLRVDRFTYAAALAACSRALDLRT 121

Query: 194 ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
              +H   +  G  + VF+ ++L  +YA  GE+  A  VF+     D V WNS++ G+ +
Sbjct: 122 GKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWNSLLSGYVR 181

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL--ELGTQVHVHVLK--YDHDL 306
               +E L ++  M   G   +   L S+++ C   + +   +   VH  V+K   D DL
Sbjct: 182 AGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASGSDVGRHIAEAVHGCVVKAGLDADL 241

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN------GYSQEALKLF 360
            L +A++DMY K G+L +A+++F  +   +VI ++ MI+G  ++        S+EAL L+
Sbjct: 242 FLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREALSLY 301

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN---HFKSMKKFYGIDPGREHY--SCMI 415
             M+   ++P+  T   +L AC+ AG  E G+    H + +K  +  D     Y  S +I
Sbjct: 302 SEMQSRGMQPSEFTFSSILRACNLAG--EFGFGKQIHGQVLKHSFHDDD----YIGSALI 355

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           DL   +G +++  +    +P + D VTW +++  C
Sbjct: 356 DLYSDSGCMEDGYRCFRSLPKQ-DIVTWTSMISGC 389


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 246/677 (36%), Positives = 370/677 (54%), Gaps = 72/677 (10%)

Query: 39  SSSLLDDFTRFCYQRDL-PRAMKAMHA-MQCHGVRADSVTYAELIKCCL-ARHAVEEAKL 95
           S+ L D   R C++    P +   ++  M+  GV  D+ T+  L KCC   R  V   ++
Sbjct: 66  STFLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQM 125

Query: 96  VHNHVLSGGFEPETFLV-NILLNMHV-------------------------------KFS 123
           +H             LV N +++M+V                               K  
Sbjct: 126 LHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLG 185

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
           LL++A  L    P RNV+SWT +IS Y  A    +A++    ML +G+ P+  T   +L 
Sbjct: 186 LLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLS 245

Query: 184 AC---DSLIILRQLH------------------------CGIIKVGFES-DVFVR----- 210
           AC     L+  R LH                        CG I   +E  D   R     
Sbjct: 246 ACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQ 305

Query: 211 --SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
             +A+ID Y KLG +  A  +F++M  RDLV +NS+I G+     + EAL L+ +M+R  
Sbjct: 306 SWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHD 365

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAM 326
             AD  T+ S+L AC  L  L  G  +H  + +   + D+ L  ALLDMY KCG +E+A 
Sbjct: 366 LRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEAS 425

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            VF  M  +DV +WS MI+GLA NG  + AL+ F  MKV   +PN +T + +L ACSH+ 
Sbjct: 426 LVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSC 485

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            +++G  +F+ M+  + I P  EHY CMIDLLGR+G L EA+ L+  MP +P+AV W ++
Sbjct: 486 LLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASI 545

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           L AC+VH++ +LA  AA+ +L L+P +   Y+ L NIY +S++W++ +++R+ M  RG+ 
Sbjct: 546 LSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEERGVK 605

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           K  G S I V  Q+H F V D +HPQI +I   ++ + ++L  VGY+P T+ +  D++ E
Sbjct: 606 KAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITRRLKSVGYSPITSQITVDVDEE 665

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
           +KE ++  HSEK+AI FGL+SL     + I KNLR+C DCH+  KL +++ N+ I++RD 
Sbjct: 666 EKEHALLAHSEKIAIAFGLISLAPNLPLHIIKNLRVCEDCHSAIKLISRIWNREIIVRDR 725

Query: 627 IRYHHFQDGNCSCGDYW 643
            R+HHF+DG CSC D+W
Sbjct: 726 SRFHHFRDGTCSCNDFW 742



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 101/443 (22%), Positives = 190/443 (42%), Gaps = 90/443 (20%)

Query: 89  AVEEAKLVHNHVLSGG--FEPET--FLVNILLN-------MHVKFSLLEEAQVLFDQMPE 137
           +V +A  +H  +++ G    P +   L+N L+N       +H++++L      LFD+MP 
Sbjct: 11  SVRQAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLHLRYAL-----CLFDRMPC 65

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS----LIILRQ 193
              +  T + + +  +   +  L L   M R GV  + FT+  + + C      +++ + 
Sbjct: 66  STFLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQM 125

Query: 194 LHCGIIKVGFESDV-FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           LH    +    S V  V + +I +Y +LG   +A   F+++P +D V W ++I G A+  
Sbjct: 126 LHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLG 185

Query: 253 DVDEALNL------------------YKRMKRA-------------GFAADQSTLTSVLR 281
            +D+A  L                  Y R  RA             G   D+ T+  +L 
Sbjct: 186 LLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLS 245

Query: 282 ACTGLALLELGTQVHVHV----LKYDHDLILN---------------------------- 309
           AC  L  L  G  +H  V    +     L++                             
Sbjct: 246 ACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQ 305

Query: 310 --NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
             NA++D YCK G ++ A  +F +M  +D+++++++I+G    G  +EAL LF  M+   
Sbjct: 306 SWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHD 365

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
           ++ +  T+V +L AC+  G +  G   H    ++   +D      + ++D+  + G+++E
Sbjct: 366 LRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLG--TALLDMYLKCGRVEE 423

Query: 427 AVKLIHEMPYEPDAVTWRALLGA 449
           A  +   M    D  TW A++  
Sbjct: 424 ASLVFQAMSVR-DVHTWSAMIAG 445



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 121/270 (44%), Gaps = 45/270 (16%)

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           LR A C+F+ MP    +   ++   F  +S  +  L LY+RM+R G   D  T   + + 
Sbjct: 53  LRYALCLFDRMPCSTFLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKC 112

Query: 283 CT-GLALLELGTQVHVHVLKY---DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
           C  G A + L   +H    +        +++N ++ MY + G   DA   F  +  KD +
Sbjct: 113 CARGRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAV 172

Query: 339 SWSTMISGLAQ--------------------------NGYSQ-----EALKLFESMKVSR 367
           +W+T+ISGLA+                          +GYS+     EA+  F SM    
Sbjct: 173 AWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDG 232

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG----IDPGREHYSCMIDLLGRAGK 423
           I+P+ +T++G+L AC+    +  G    +S+ K  G    +  G+   + +ID+  + G 
Sbjct: 233 IEPDEVTVIGLLSACAQLKDLVFG----RSLHKLVGEKGMLMSGKLVVA-LIDMYAKCGD 287

Query: 424 LQEAVKLIHEMPYEPDAVTWRALL-GACKV 452
           +  A ++   +       +W A++ G CK+
Sbjct: 288 IGRAWEVFDALGRGRRPQSWNAMIDGYCKL 317


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/588 (37%), Positives = 335/588 (56%), Gaps = 38/588 (6%)

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
           + VH  +L  G         +L++ + +  LL +A+  FD  P R++  ++ +++A   +
Sbjct: 21  RRVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHS 80

Query: 154 KMNDKALELLIFMLRE-GVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFV 209
              +  L LL  ML +  +RP+ F  +++  A     SL + RQLH       + +D  V
Sbjct: 81  SDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVV 140

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
           +S+LID+Y K G  ++A  VF+ +  ++ VVW ++I G+A N    EAL+L++ M   G 
Sbjct: 141 KSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGL 200

Query: 270 AA--------------------------------DQSTLTSVLRACTGLALLELGTQVHV 297
                                             D   L +V+     LA L LG Q+H 
Sbjct: 201 FTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHG 260

Query: 298 HVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
            V++  +   +I+ NAL+DMY KC  +  A  VF  +  +DVISW+T++ G AQ+G ++E
Sbjct: 261 FVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAEE 320

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
              L+  M ++ +KPN +T VG+++ACSHAG V+ G   F SMK+ YG+ PG +HY+C +
Sbjct: 321 VFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYL 380

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           DLL R+G L EA KLI  MPYEPD  TW ALL ACK H +T + +  A  +L L P+DP 
Sbjct: 381 DLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLELRPKDPS 440

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
           TYILLSN+YA + KWD VA+VRK M    I K PG SW+E  ++   F+  +      ++
Sbjct: 441 TYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEVPLDVGEE 500

Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
           I   L+ L+ ++   GY PDT+ V+ DLE  +KE  +  HSE+LA+ FG++    G  IR
Sbjct: 501 ITCFLEELVSEMRKRGYVPDTSSVMHDLEEHEKEQHLFVHSERLAVAFGILKSPPGSVIR 560

Query: 596 IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + KNLR+CGDCHT  K  + +  + I++RD  R+HHF+DGNCSC ++W
Sbjct: 561 VVKNLRVCGDCHTVMKFISAIAQRKIIVRDASRFHHFEDGNCSCSEFW 608



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 166/358 (46%), Gaps = 50/358 (13%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
            +R D    A L        ++   + +H H  +  +  +  + + L++M+ K  + ++A
Sbjct: 98  ALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDA 157

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR----- 183
           + +FD +  +N V WT +IS Y       +AL+L   M   G    +FT++A++      
Sbjct: 158 RKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHG----LFTWTALISGFVKA 213

Query: 184 --------------------------------ACD--SLIILRQLHCGIIKVGFESDVFV 209
                                           A D  +L++ RQLH  ++++GF S + V
Sbjct: 214 GNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIV 273

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
            +AL+D+Y+K  ++ +A  VF  +  RD++ W +I+ G AQ+   +E   LY RM  AG 
Sbjct: 274 GNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGM 333

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDA 325
             ++ T   ++ AC+   L++ G Q+    +K ++ +          LD+  + G L +A
Sbjct: 334 KPNEVTFVGLIYACSHAGLVQKGRQL-FDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEA 392

Query: 326 MSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK-PNYITIVGVLFA 381
             + + M  + D  +W  ++S   ++  +Q  L++ +++   R K P+   ++  ++A
Sbjct: 393 EKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLELRPKDPSTYILLSNVYA 450



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 7/206 (3%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           +R++H  ++K G        + L+  YA+   L +A   F++ P RDL ++++++   + 
Sbjct: 20  VRRVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSH 79

Query: 251 NSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLI 307
           +SD +  L L +RM        D   L S+  A   L  L LG Q+H H     Y  D +
Sbjct: 80  SSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNV 139

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + ++L+DMYCKCG  +DA  VF  +  K+ + W+ +ISG A NG + EAL LF+SM    
Sbjct: 140 VKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHG 199

Query: 368 IKPNYITIVGVLFACSHAG----FVE 389
           +      I G + A ++ G    FVE
Sbjct: 200 LFTWTALISGFVKAGNYTGAMGLFVE 225


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/588 (37%), Positives = 328/588 (55%), Gaps = 32/588 (5%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M       D  T+  ++K C     +     VH+ ++  G +   F+ N L+ 
Sbjct: 121 ALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVA 180

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L EA+ + DQMP R+VVSW +M++ Y  +   D ALE                
Sbjct: 181 MYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALE---------------- 224

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
              + +  DSL            +  ++      + +  Y  L  ++    +F  M  ++
Sbjct: 225 ---ICKEMDSL-----------NLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKN 270

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           L+ WN +I  +  NS  +EA++L+ +M+  G   D  T+ S+L AC  L+ L LG ++H 
Sbjct: 271 LISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHK 330

Query: 298 HVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           ++ K +   +L+L NALLDMY KCG LE+A  VF +M  +DV+SW++M+S   ++G   +
Sbjct: 331 YIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYD 390

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           A+ LF  M  S   P+ I  V VL ACSH G ++ G ++F+ M + YGI P  EH++CM+
Sbjct: 391 AVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMV 450

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           DL GRAG+++EA   I +MP EP+   W ALL AC+VH   D+ + AA  +  L P+  G
Sbjct: 451 DLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSG 510

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
            Y+LLSNIYA +  W +V  VR  M+  GI K PG S +E+N Q+H F   D  HPQ   
Sbjct: 511 YYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKN 570

Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
           I   L  L+ K+  +GY P T   L D+E E KE  +  HSEKLAIVF +++  QG  IR
Sbjct: 571 IYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIR 630

Query: 596 IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           I KNLR+CGDCH   KL +K+ ++ I++RD  R+HHF +G CSCGDYW
Sbjct: 631 ITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 179/364 (49%), Gaps = 37/364 (10%)

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A+ +FD+  E+NVV +  MI +Y +  +  +AL +   ML     P+ +T+  VL+AC  
Sbjct: 90  ARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSG 149

Query: 188 LIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L  LR   Q+H  I+KVG ++++F+ +AL+ +Y K G LR A  V ++MP RD+V WNS+
Sbjct: 150 LDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSM 209

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
           + G+AQ+   D+AL + K M       D  T+ S         L  +     +  ++Y H
Sbjct: 210 VAGYAQSGQFDDALEICKEMDSLNLNHDAGTMAS---------LSPVVCYTSLENVQYIH 260

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           ++                      F RM +K++ISW+ MI+    N    EA+ LF  M+
Sbjct: 261 NM----------------------FERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQME 298

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
              +KP+ +TI  +L AC     +  G    K ++K   + P     + ++D+  + G L
Sbjct: 299 ECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKG-NLRPNLLLENALLDMYAKCGCL 357

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484
           +EA  +  +M    D V+W +++ A         A+    K+L+   Q+P +   +S + 
Sbjct: 358 EEARDVFDKMRLR-DVVSWTSMMSAYGRSGQGYDAVALFAKMLD-SGQNPDSIAFVSVLS 415

Query: 485 ANSQ 488
           A S 
Sbjct: 416 ACSH 419



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 158/335 (47%), Gaps = 34/335 (10%)

Query: 191 LRQLHCGI-IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           L +LH  I I      D  +   L+  Y+  GE   A  +F+    +++V +N +I  + 
Sbjct: 54  LNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYV 113

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
            N+   EAL++++ M    F  D  T   VL+AC+GL  L +G QVH  ++K   D +L 
Sbjct: 114 NNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLF 173

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + NAL+ MY KCG L +A  V  +M  +DV+SW++M++G AQ+G   +AL++ + M    
Sbjct: 174 IGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLN 233

Query: 368 IKPNYITIVGVLFACSHAGF--VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
           +  +  T+  +     +     V+   N F+ M K   I      ++ MI +        
Sbjct: 234 LNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLIS-----WNVMIAIYVNNSMPN 288

Query: 426 EAVKLIHEMP---YEPDAVTWRALLGACKVHRNTDLAICAAKKIL-------NLDPQDPG 475
           EAV L  +M     +PDAVT  +LL AC      DL+     + L       NL P    
Sbjct: 289 EAVSLFLQMEECGMKPDAVTIASLLPAC-----GDLSALFLGRRLHKYIEKGNLRPN--- 340

Query: 476 TYILLSN----IYANSQKWDEVAEVRKTMRARGIT 506
             +LL N    +YA     +E  +V   MR R + 
Sbjct: 341 --LLLENALLDMYAKCGCLEEARDVFDKMRLRDVV 373


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/588 (37%), Positives = 328/588 (55%), Gaps = 32/588 (5%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M       D  T+  ++K C     +     VH+ ++  G +   F+ N L+ 
Sbjct: 121 ALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVA 180

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L EA+ + DQMP R+VVSW +M++ Y  +   D ALE                
Sbjct: 181 MYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALE---------------- 224

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
              + +  DSL            +  ++      + +  Y  L  ++    +F  M  ++
Sbjct: 225 ---ICKEMDSL-----------NLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKN 270

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           L+ WN +I  +  NS  +EA++L+ +M+  G   D  T+ S+L AC  L+ L LG ++H 
Sbjct: 271 LISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHK 330

Query: 298 HVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           ++ K +   +L+L NALLDMY KCG LE+A  VF +M  +DV+SW++M+S   ++G   +
Sbjct: 331 YIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYD 390

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           A+ LF  M  S   P+ I  V VL ACSH G ++ G ++F+ M + YGI P  EH++CM+
Sbjct: 391 AVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMV 450

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           DL GRAG+++EA   I +MP EP+   W ALL AC+VH   D+ + AA  +  L P+  G
Sbjct: 451 DLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSG 510

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
            Y+LLSNIYA +  W +V  VR  M+  GI K PG S +E+N Q+H F   D  HPQ   
Sbjct: 511 YYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKN 570

Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
           I   L  L+ K+  +GY P T   L D+E E KE  +  HSEKLAIVF +++  QG  IR
Sbjct: 571 IYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIR 630

Query: 596 IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           I KNLR+CGDCH   KL +K+ ++ I++RD  R+HHF +G CSCGDYW
Sbjct: 631 ITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 179/364 (49%), Gaps = 37/364 (10%)

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A+ +FD+  E+NVV +  MI +Y +  +  +AL +   ML     P+ +T+  VL+AC  
Sbjct: 90  ARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSG 149

Query: 188 LIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L  LR   Q+H  I+KVG ++++F+ +AL+ +Y K G LR A  V ++MP RD+V WNS+
Sbjct: 150 LDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSM 209

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
           + G+AQ+   D+AL + K M       D  T+ S         L  +     +  ++Y H
Sbjct: 210 VAGYAQSGQFDDALEICKEMDSLNLNHDAGTMAS---------LSPVVCYTSLENVQYIH 260

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           ++                      F RM +K++ISW+ MI+    N    EA+ LF  M+
Sbjct: 261 NM----------------------FERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQME 298

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
              +KP+ +TI  +L AC     +  G    K ++K   + P     + ++D+  + G L
Sbjct: 299 ECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKG-NLQPNLLLENALLDMYAKCGCL 357

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484
           +EA  +  +M    D V+W +++ A         A+    K+L+   Q+P +   +S + 
Sbjct: 358 EEARDVFDKMRLR-DVVSWTSMMSAYGRSGQGYDAVALFAKMLD-SGQNPDSIAFVSVLS 415

Query: 485 ANSQ 488
           A S 
Sbjct: 416 ACSH 419



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 158/335 (47%), Gaps = 34/335 (10%)

Query: 191 LRQLHCGI-IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           L +LH  I I      D  +   L+  Y+  GE   A  +F+    +++V +N +I  + 
Sbjct: 54  LNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYV 113

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
            N+   EAL++++ M    F  D  T   VL+AC+GL  L +G QVH  ++K   D +L 
Sbjct: 114 NNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLF 173

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + NAL+ MY KCG L +A  V  +M  +DV+SW++M++G AQ+G   +AL++ + M    
Sbjct: 174 IGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLN 233

Query: 368 IKPNYITIVGVLFACSHAGF--VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
           +  +  T+  +     +     V+   N F+ M K   I      ++ MI +        
Sbjct: 234 LNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLIS-----WNVMIAIYVNNSMPN 288

Query: 426 EAVKLIHEMP---YEPDAVTWRALLGACKVHRNTDLAICAAKKIL-------NLDPQDPG 475
           EAV L  +M     +PDAVT  +LL AC      DL+     + L       NL P    
Sbjct: 289 EAVSLFLQMEECGMKPDAVTIASLLPAC-----GDLSALFLGRRLHKYIEKGNLQPN--- 340

Query: 476 TYILLSN----IYANSQKWDEVAEVRKTMRARGIT 506
             +LL N    +YA     +E  +V   MR R + 
Sbjct: 341 --LLLENALLDMYAKCGCLEEARDVFDKMRLRDVV 373


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/596 (38%), Positives = 351/596 (58%), Gaps = 11/596 (1%)

Query: 58   AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            A ++   M+  G    + T    +  C +   +   + +H   L  G + +  + N LL 
Sbjct: 945  AAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLA 1004

Query: 118  MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN-DKALELLIFMLREGVRPNMF 176
            ++ +     E   +F  MPE + VSW ++I A  D++ +  +A++  + M+R G   +  
Sbjct: 1005 LYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRV 1064

Query: 177  TYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
            T+  +L A  SL    +  Q+H  ++K     D  + +AL+  Y K GE+   E +F  M
Sbjct: 1065 TFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARM 1124

Query: 234  P-TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
              TRD V WNS+I G+  N  + +A++L   M + G   D  T  +VL AC  +A LE G
Sbjct: 1125 SETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERG 1184

Query: 293  TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
             +VH   ++   + D+++ +AL+DMY KCG ++ A   F  M  ++V SW++MISG A++
Sbjct: 1185 MEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARH 1244

Query: 351  GYSQEALKLFESMKVSRIKPNYIT-IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
            G+ ++ALKLF  M +    P+++  ++GVL ACSH GFVE+G+ HFKSM + Y + P  E
Sbjct: 1245 GHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVE 1304

Query: 410  HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC--KVHRNTDLAICAAKKIL 467
            H+SCM+DLLGRAGKL E    I+ MP +P+ + WR +LGAC     RNT+L   AA+ +L
Sbjct: 1305 HFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLL 1364

Query: 468  NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
             L+PQ+   Y+LL+N+YA+ +KW++VA+ R  M+   + KE GCSW+ +   +H F   D
Sbjct: 1365 ELEPQNAVNYVLLANMYASGEKWEDVAKARXAMKEAAVKKEAGCSWVTMKDGVHVFVAGD 1424

Query: 528  SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
              HP+ D I   L+ L +K+   GY P T Y L DLE E KE+ + YHSEK+A+ F +++
Sbjct: 1425 KLHPEKDXIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAF-VLT 1483

Query: 588  LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
                  IRI KNLR+CGDCH+     +K+  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 1484 RQSALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 1539



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 199/373 (53%), Gaps = 24/373 (6%)

Query: 96   VHNHVLSGGFEPETFLVNILLNMHVK-FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK 154
            +H  +    +  +  + N+L++M+        +A+ +FD++  RN +SW ++IS Y    
Sbjct: 669  IHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRG 728

Query: 155  MNDKALELLIFMLREGV----RPNMFTYSAVLRA-CDS----LIILRQLHCGIIKVGFES 205
                A +L   M +EG+    +PN +T+ +++ A C S    L +L Q+   + K GF  
Sbjct: 729  DXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQ 788

Query: 206  DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
            D++V SAL+  +A+ G   +A+ +F +M  R++V  N ++ G  +    + A  ++  MK
Sbjct: 789  DLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMK 848

Query: 266  R-AGFAADQSTLTSVLRACTGLALLE----LGTQVHVHVLKY---DHDLILNNALLDMYC 317
               G  +D   +  +L A +  ++LE     G +VH HV++    D+ + + N L++MY 
Sbjct: 849  DLVGINSDSYVV--LLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYA 906

Query: 318  KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
            K G++ DA SVF  M++KD +SW+++ISGL QN  S++A + F  M+ +   P+  T++ 
Sbjct: 907  KSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLIS 966

Query: 378  VLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY 436
             L +C+  G++  G   H   +K   G+D      + ++ L    G   E +K+   MP 
Sbjct: 967  TLSSCASLGWIMLGEQIHCDGLK--LGLDTDVSVSNALLALYAETGCFTECLKVFSLMP- 1023

Query: 437  EPDAVTWRALLGA 449
            E D V+W +++GA
Sbjct: 1024 EYDQVSWNSVIGA 1036



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 199/399 (49%), Gaps = 26/399 (6%)

Query: 72  ADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVL 131
           + S T+  LI         EEA+ +H   +  GF    FL N L+N++V+   L  AQ L
Sbjct: 542 SSSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKL 601

Query: 132 FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC-----D 186
           FD+M  RN+V+W  +IS Y      D+A      M+R G  PN + + + LRAC      
Sbjct: 602 FDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPS 661

Query: 187 SLIILRQLHCGIIKVGFESDVFVRSALIDIYAK-LGELRNAECVFNEMPTRDLVVWNSII 245
              +  Q+H  I K  + SDV V + LI +Y   L    +A  VF+ +  R+ + WNSII
Sbjct: 662 GCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSII 721

Query: 246 GGFAQNSDVDEALNLYKRMKRAG----FAADQSTLTSVLR-ACT----GLALLELGTQVH 296
             +++  D   A +L+  M++ G    F  ++ T  S++  AC+    GL +LE   Q+ 
Sbjct: 722 SVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLE---QML 778

Query: 297 VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
             V K  +  DL + +AL+  + + G  +DA ++F +M  ++V+S + ++ GL +    +
Sbjct: 779 ARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGE 838

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY---GIDPGREHY 411
            A K+F  MK   +  N  + V +L A S    +E+G    + +       G++  +   
Sbjct: 839 AAAKVFHEMK-DLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAI 897

Query: 412 -SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            + ++++  ++G + +A   + E+  E D+V+W +L+  
Sbjct: 898 GNGLVNMYAKSGAIADACS-VFELMVEKDSVSWNSLISG 935



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 22/226 (9%)

Query: 36   TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL 95
            TR+  S     + + +   L +AM  +  M   G R DS T+A ++  C +   +E    
Sbjct: 1127 TRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERGME 1186

Query: 96   VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
            VH   +    E +  + + L++M+ K   ++ A   F+ MP RNV SW +MIS Y     
Sbjct: 1187 VHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGH 1246

Query: 156  NDKALELLIFMLREGVRPN-MFTYSAVLRACDSLIILRQLHCGIIKVGFE-----SDVFV 209
             +KAL+L   M+ +G  P+ +     VL AC         H G ++ GFE     S+V+ 
Sbjct: 1247 GEKALKLFTRMMLDGQPPDHVAPLLGVLSACS--------HVGFVEEGFEHFKSMSEVYR 1298

Query: 210  RSA-------LIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGG 247
             S        ++D+  + G+L       N MP + ++++W +++G 
Sbjct: 1299 LSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGA 1344


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/600 (37%), Positives = 343/600 (57%), Gaps = 12/600 (2%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111
           QR    A+     M   G   ++ T+    K C +         +H HV+  G EPE F+
Sbjct: 34  QRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFV 93

Query: 112 VNILLNMHVKFSLLEEAQVLFDQ-MPERNV-VSWTTMISAYC-DAKMNDKALELLIFMLR 168
              L++M+ K S +  A+ +FD+    RN+ V +  +I+ Y  +++ +D  L L   M +
Sbjct: 94  QTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVL-LFRQMRK 152

Query: 169 EGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           EGV  N  T   ++  C   I L     LH   ++ G + D+ V + L+ +Y + G +  
Sbjct: 153 EGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDF 212

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F+ MP + L+ WN++I G+AQN      L+LY++M+  G   D  TL  VL +C  
Sbjct: 213 ARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAH 272

Query: 286 LALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L     G +V   + +  +  +  L NAL++MY +CG+L  A ++F  M +K+VISW+ +
Sbjct: 273 LGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAI 332

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           I+G   +G  + A++LF+ M  S   P+    V VL ACSHAG  E G  +F +M++ YG
Sbjct: 333 IAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYG 392

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           + PG EHYSC++DLLGRAG+L+EA KLI  M  EPD   W ALLGACK+HRN +LA  A 
Sbjct: 393 LQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAF 452

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
           +K++  +P + G Y+LLSNI++ +   + +  VR  MR R + KEPGCS++E   +IH F
Sbjct: 453 EKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLF 512

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
              D +HPQ  +I   L  L   +   G + D +   Q+   E+    +  HSEKLAI F
Sbjct: 513 LAGDRTHPQAQEIYHMLDGLEDIIKRRGGSNDND---QESRNEELITGMGVHSEKLAIAF 569

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GL++   G  I + KNLR+CGDCH F KL +++ ++ +V+RD  R+HHF++G CSC DYW
Sbjct: 570 GLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDYW 629



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 106/348 (30%), Positives = 188/348 (54%), Gaps = 11/348 (3%)

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQ 193
           +    SW   +      +   +AL L   ML  G  PN FT+    ++C SL   +   Q
Sbjct: 18  QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQ 77

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE-MPTRDLVV-WNSIIGGFAQN 251
           LH  +IK G E + FV+++LI +Y K   + +A  VF+E   +R+L V +N++I G++ N
Sbjct: 78  LHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLN 137

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILN 309
           S   +A+ L+++M++ G + +  T+  ++  C G   L  GT +H   +++  D DL + 
Sbjct: 138 SRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVG 197

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
           N LL MY +CGS++ A  +F  M +K +I+W+ MISG AQNG +   L L+  M+ + I 
Sbjct: 198 NCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIV 257

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMK-KFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
           P+ +T+VGVL +C+H G    G    + ++   +G +P  +  + +I++  R G L +A 
Sbjct: 258 PDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLK--NALINMYARCGNLVKAR 315

Query: 429 KLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476
            +   M  E + ++W A++    +H   +LA+    ++++ D    G 
Sbjct: 316 AIFDGMT-EKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGA 362


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/618 (37%), Positives = 349/618 (56%), Gaps = 52/618 (8%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  GVR DS TY   +  C    ++   K +H  V+      + ++ + L+ ++ K   
Sbjct: 261 MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGC 320

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            +EA+ +F+ + +RN V+WT +I+ +       +++EL   M  E +  + F  + ++  
Sbjct: 321 FKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISG 380

Query: 185 CDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF---NE------ 232
           C S   L + RQLH   +K G    V V ++LI +YAK   L++AE +F   NE      
Sbjct: 381 CCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSW 440

Query: 233 ----------------------MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGF 269
                                 M T++++ WN+++G + Q+   ++ L +Y  M      
Sbjct: 441 TSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDV 500

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDA 325
             D  T  ++ + C  L   +LG Q+    +K    LIL+    NA++ MY KCG + +A
Sbjct: 501 RPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVG--LILDTSVANAVITMYSKCGRILEA 558

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             VF  +  KD++SW+ MI+G +Q+G  ++A+++F+ +     KP+YI+ V VL  CSH+
Sbjct: 559 RKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHS 618

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G V++G ++F  MK+ + I PG EH+SCM+DLLGRAG L EA  LI EMP +P A  W A
Sbjct: 619 GLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGA 678

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LL ACK+H N +LA  AAK +  LD  D G+Y+L++ IYA++ K D+ A++RK MR +GI
Sbjct: 679 LLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGI 738

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            K PG SW+EVN ++H F   D SHPQ+  I K L  L++K+  +GY          +  
Sbjct: 739 KKNPGYSWMEVNNKVHVFKADDVSHPQVIAIRKKLDELMEKIARLGY----------VRT 788

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           +     I +HSEKLA+ FGLMSL     I I KNLRICGDCHT  KL + +  +  VIRD
Sbjct: 789 DSPRSEI-HHSEKLAVAFGLMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTGREFVIRD 847

Query: 626 PIRYHHFQDGNCSCGDYW 643
            +R+HHF  G+CSCGDYW
Sbjct: 848 AVRFHHFNGGSCSCGDYW 865



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 166/306 (54%), Gaps = 9/306 (2%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           EP  F  N +L  +VK   ++ A  LFD MPER+VVSW  M+SA   +    +AL++++ 
Sbjct: 201 EPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVD 260

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           M  +GVR +  TY++ L AC  L  LR   QLH  +I+     D +V SAL+++YAK G 
Sbjct: 261 MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGC 320

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
            + A+ VFN +  R+ V W  +I GF Q+    E++ L+ +M+      DQ  L +++  
Sbjct: 321 FKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISG 380

Query: 283 CTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           C     L LG Q+H   LK      ++++N+L+ MY KC +L+ A S+F  M +KD++SW
Sbjct: 381 CCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSW 440

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           ++MI+  +Q G   +A + F+ M       N IT   +L A    G  EDG   +  M  
Sbjct: 441 TSMITAHSQVGNIAKAREFFDGMST----KNVITWNAMLGAYIQHGAEEDGLRMYNVMLS 496

Query: 401 FYGIDP 406
              + P
Sbjct: 497 EKDVRP 502



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 159/313 (50%), Gaps = 37/313 (11%)

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
           P     N++LN +VK   L +A  LF +MP R+V SW T++S Y  ++    +LE  + M
Sbjct: 69  PNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSM 128

Query: 167 LREG-VRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
            R G   PN FT++  +++C +L    +  QL   + K G + D  V +AL+D++ + G 
Sbjct: 129 HRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGT 188

Query: 223 L-----------------RNAECV--------------FNEMPTRDLVVWNSIIGGFAQN 251
           +                 RN+  V              F+ MP RD+V WN ++   +Q+
Sbjct: 189 VDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQS 248

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILN 309
             V EAL++   M+  G   D +T TS L AC  L+ L  G Q+H  V++     D  + 
Sbjct: 249 GRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVA 308

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
           +AL+++Y KCG  ++A  VF+ +  ++ ++W+ +I+G  Q+G   E+++LF  M+   + 
Sbjct: 309 SALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMT 368

Query: 370 PNYITIVGVLFAC 382
            +   +  ++  C
Sbjct: 369 LDQFALATLISGC 381



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 2/128 (1%)

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM- 363
           ++I +N +L+ Y K G L DA+ +F RM  +DV SW+T++SG  Q+     +L+ F SM 
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
           +     PN  T    + +C   G           ++KF G     +  + ++D+  R G 
Sbjct: 130 RSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKF-GSQDDSDVAAALVDMFVRCGT 188

Query: 424 LQEAVKLI 431
           +  A +L 
Sbjct: 189 VDLASRLF 196


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/555 (41%), Positives = 323/555 (58%), Gaps = 39/555 (7%)

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           AQ +F+ +   N   W  +I AY ++   + A      ML   V  N +T+  +LRAC +
Sbjct: 41  AQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRN 100

Query: 188 LIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L+ +    Q+H  +IK+GF SDVF  +AL+ +YA  GE+  A  +F+ +P RD V WN +
Sbjct: 101 LLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIM 160

Query: 245 IGGFAQNSDVD-------------------------------EALNLYKRMKRAGFAADQ 273
           I G+ ++ DV                                EAL+L   M+ AGF  D 
Sbjct: 161 IDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDG 220

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
             + S+L AC  L  L+ G  +H +VL    D D ++  AL++MY KCG +E+A+SVF +
Sbjct: 221 VAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGK 280

Query: 332 MI--QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
           +   QKDV  W+ MI G A +G   EAL+ F  M+   I+PN IT   VL ACS+ G VE
Sbjct: 281 LKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVE 340

Query: 390 DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           +G   FKSMK FY ++P  EHY CM+DLLGR+G+L EA +LI +MP +P AV W ALL A
Sbjct: 341 EGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKA 400

Query: 450 CKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEP 509
           C +HR+  L       ++ +D    G YI L+ I A   KW E AEVR  M++ G+   P
Sbjct: 401 CWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISP 460

Query: 510 GCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL-VGVGYAPDTNYVLQDLEGEQK 568
           G S + +N  +H F      HPQ+++I   LK + ++L    GY P T  +L DLE E+K
Sbjct: 461 GKSSVTLNGIVHEFLAGHQDHPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLENEEK 520

Query: 569 EDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIR 628
           E ++  HSEKLAI FGL++   G TIR+ KNLRIC DCHT AKL +++ ++ I++RD +R
Sbjct: 521 ETAMAQHSEKLAIAFGLINTKPGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIMRDRVR 580

Query: 629 YHHFQDGNCSCGDYW 643
           +HHF+DG+CSC DYW
Sbjct: 581 FHHFRDGSCSCKDYW 595



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 172/381 (45%), Gaps = 48/381 (12%)

Query: 12  TKPSSQARQFSLTITPPVASC-------NTITRNSSSLLDDFTRFCYQRDLPR-AMKAMH 63
           T+P    +  +L  +P V          N IT  ++ + +   R     D P  A  +  
Sbjct: 18  TEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQ 77

Query: 64  AMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123
            M    V  +S T+  L++ C    A+ EA  VH  V+  GF  + F +N LL+++    
Sbjct: 78  QMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCG 137

Query: 124 LLEEAQVLFDQMPER-------------------------------NVVSWTTMISAYCD 152
            +  A+ LFD +PER                               NVVSWT++IS   +
Sbjct: 138 EIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVE 197

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFV 209
           A  + +AL L   M   G   +    +++L AC +L  L   R LH  ++  G + D  +
Sbjct: 198 AGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVI 257

Query: 210 RSALIDIYAKLGELRNAECVFNEMP--TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
             AL+++Y K G++  A  VF ++    +D+ +W ++I GFA +    EAL  + RM+R 
Sbjct: 258 GCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRRE 317

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHV---LKYDHDLILNNALLDMYCKCGSLED 324
           G   +  T T+VLRAC+   L+E G ++   +      +  +     ++D+  + G L++
Sbjct: 318 GIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDE 377

Query: 325 AMSVFSRM-IQKDVISWSTMI 344
           A  +  +M ++   + W  ++
Sbjct: 378 AKELIKKMPMKPSAVIWGALL 398


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/586 (36%), Positives = 332/586 (56%), Gaps = 20/586 (3%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
            + +  TY   ++  L    +E  K +H+H +  G      +   + NM+VK   LE A+
Sbjct: 107 TKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAE 166

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
           ++F++M E+N V+WT ++  Y  A+    AL L   M+ EGV  + + +S VL+AC  L 
Sbjct: 167 LVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLE 226

Query: 190 IL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            L   RQ+H  I+K+G ES+V V + L+D Y K   L +A   F  +   + V W+++I 
Sbjct: 227 ELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALIT 286

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK----- 301
           G+ Q  + +EAL  ++ ++      +  T TS+ +AC+ LA    G Q H   +K     
Sbjct: 287 GYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVA 346

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
           Y H     +A++ MY +CG L+ A  VF  +   D ++W+ +I+G A  G + EALKLF 
Sbjct: 347 YQHG---ESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFR 403

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            M+   ++PN +T + VL ACSH+G V +G  + +SM   YG+    +HY CM+D+  RA
Sbjct: 404 RMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRA 463

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           G LQEA++LI  MP+ PDA++W+ LLG C  +RN ++   AA+ +  LDP+D   YIL+ 
Sbjct: 464 GFLQEALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMF 523

Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
           N+YA+  KW E A VRK M  R + KE  CSWI V  ++H F V D  HPQ ++I   L+
Sbjct: 524 NLYASFGKWKEAANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLE 583

Query: 542 HL----IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
            L    I++  G+    D +  L      ++++ +  HSE+LA+ FGL+S      + + 
Sbjct: 584 ALNDSVIKEETGLLTEEDVSNSLP-----ERKEQLLVHSERLALAFGLISTPSSAPVVVF 638

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLR C DCH F K  + +  + IV+RD  R+HHF+ G CSC DYW
Sbjct: 639 KNLRACKDCHDFGKQVSLITGREIVVRDSFRFHHFKLGECSCNDYW 684



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/402 (31%), Positives = 202/402 (50%), Gaps = 9/402 (2%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  G+     +Y  L + C    ++ + +L H  +      P  FL N +L M+ K   
Sbjct: 1   MEDAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGS 60

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L +A+ +FD+M ERN+VSW T+ISAY +  + DK   +   ML    +PN  TY   LR+
Sbjct: 61  LADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRS 120

Query: 185 C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
                 L I +Q+H   I+ G  S+  V +A+ ++Y K G L  AE VF +M  ++ V W
Sbjct: 121 LLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAW 180

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
             I+ G+ Q     +AL L+ +M   G   D+   + VL+AC GL  L  G Q+H H++K
Sbjct: 181 TGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVK 240

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
              + ++ +   L+D Y KC +LE A   F  + + + +SWS +I+G  Q G  +EALK 
Sbjct: 241 LGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKT 300

Query: 360 FESMKVSRIKPNYITIVGVLFACSH-AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
           FES++   +  N  T   +  ACS  A F      H  ++K    +   +   S MI + 
Sbjct: 301 FESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKS--SLVAYQHGESAMITMY 358

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            R G+L  A ++   +  +PDAV W A++       N   A+
Sbjct: 359 SRCGRLDYATRVFESID-DPDAVAWTAIIAGYAYQGNAPEAL 399



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 145/297 (48%), Gaps = 9/297 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M   GV  D   ++ ++K C     +   + +H H++  G E E  +   L++
Sbjct: 196 ALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVD 255

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            +VK S LE A   F+ + E N VSW+ +I+ YC     ++AL+    +    V  N FT
Sbjct: 256 FYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFT 315

Query: 178 YSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           Y+++ +AC +L       Q H   IK    +     SA+I +Y++ G L  A  VF  + 
Sbjct: 316 YTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESID 375

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             D V W +II G+A   +  EAL L++RM+  G   +  T  +VL AC+   L+  G Q
Sbjct: 376 DPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQ 435

Query: 295 VHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
            ++  +  ++ +       + ++D+Y + G L++A+ +   M    D +SW  ++ G
Sbjct: 436 -YLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGG 491



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 5/206 (2%)

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGS 321
           M+ AG +    +   +  AC  +  L  G   H  + +   +    L N++L MYCKCGS
Sbjct: 1   MEDAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGS 60

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
           L DA  VF  M +++++SW+T+IS  A+NG   +   +F +M     KPN  T +G L +
Sbjct: 61  LADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRS 120

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
             +   +E G     S     G+       + + ++  + G L E  +L+ E   E +AV
Sbjct: 121 LLNPSGLEIG-KQIHSHAIRSGLGSNASVNTAISNMYVKCGWL-EGAELVFEKMSEKNAV 178

Query: 442 TWRALL-GACKVHRNTDLAICAAKKI 466
            W  ++ G  +  R  D     AK +
Sbjct: 179 AWTGIMVGYTQAERQMDALALFAKMV 204



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 5/206 (2%)

Query: 47  TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           T +C   +   A+K   +++   V  +S TY  + + C A          H   +     
Sbjct: 286 TGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLV 345

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
                 + ++ M+ +   L+ A  +F+ + + + V+WT +I+ Y       +AL+L   M
Sbjct: 346 AYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRM 405

Query: 167 LREGVRPNMFTYSAVLRAC--DSLIIL-RQ-LHCGIIKVGFESDVFVRSALIDIYAKLGE 222
              GVRPN  T+ AVL AC    L+I  RQ L       G  + +     ++DIY++ G 
Sbjct: 406 QDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGF 465

Query: 223 LRNAECVFNEMP-TRDLVVWNSIIGG 247
           L+ A  +   MP + D + W  ++GG
Sbjct: 466 LQEALELIRSMPFSPDAMSWKCLLGG 491


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/530 (40%), Positives = 325/530 (61%), Gaps = 12/530 (2%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMI-----SAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
           L  A+ +FD++P    V W   +              ++A  + + M+ EGV P+ +T+ 
Sbjct: 83  LAYARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFV 142

Query: 180 AVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           ++L+AC S       RQ H   +K G     +V   LI++YA+ G++R A  +F+ M   
Sbjct: 143 SLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGE 202

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
            +V +N++I    ++S   EAL L++ M+  G      TL SVL AC  L  LELG  +H
Sbjct: 203 CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIH 262

Query: 297 VHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
            ++  ++ D  + +N AL+DMY KCGSLEDA+ VF  M  +D  +WS M+   A +GY +
Sbjct: 263 DYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGR 322

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414
           EA+ +FE MK   +KP+ +T +GVL+ACSH+G V +G  +F SM++ YGI  G +HY C+
Sbjct: 323 EAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIVSGIKHYGCV 381

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474
            DLL R+G+L+ A K I E+P +P A+ WR LL AC  H + D+     ++IL LD    
Sbjct: 382 TDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHG 441

Query: 475 GTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQID 534
           G Y++ SN+ AN+ +W+E+  VRK M  +G+ K PGCS IE++  +H F   D SHP   
Sbjct: 442 GDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQ 501

Query: 535 KINKHLKHLIQKLVGVGYAPDTNYVLQ-DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT 593
           +  + +  +I++L  VGY P+T++V   ++  E+K  S++YHSEKLAI FGL++   G T
Sbjct: 502 EARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTT 561

Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +RI KNLR+C DCH+ AKL + + N+ I++RD  R+HHF+DG CSCGDYW
Sbjct: 562 LRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 152/303 (50%), Gaps = 6/303 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   GV  D+ T+  L+K C +  A EE +  H   +  G     ++   L+NM+ +   
Sbjct: 129 MMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGD 188

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +  A+V+FD+M    VVS+  MI+A   + +  +AL L   M  +G++P   T  +VL A
Sbjct: 189 VRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSA 248

Query: 185 C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C    +L + R +H  I K+  +S V V +ALID+YAK G L +A  VF +M +RD   W
Sbjct: 249 CALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAW 308

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           + ++  +A +    EA+++++ MK+ G   D  T   VL AC+   ++  G Q    + +
Sbjct: 309 SVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMRE 368

Query: 302 YD--HDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALK 358
           Y     +     + D+  + G LE A      + I+   I W T++S  A +G      +
Sbjct: 369 YGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKR 428

Query: 359 LFE 361
           +FE
Sbjct: 429 VFE 431



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 160/355 (45%), Gaps = 30/355 (8%)

Query: 180 AVLRACDSLIILRQLHCGIIKV--GFESDVFVRSALIDIYAKLG-----ELRNAECVFNE 232
           A L  C SL  L QLH   +K   G ++     + L+ +  + G      L  A  VF+ 
Sbjct: 33  AYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDR 92

Query: 233 MPTRDLVVW-NSII----GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
           +P    V+W N+++     G       +EA  ++ RM   G A D  T  S+L+AC    
Sbjct: 93  IPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKACASAR 152

Query: 288 LLELGTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
             E G Q H   +K    +H+ +    L++MY +CG +  A  +F RM  + V+S++ MI
Sbjct: 153 AGEEGRQAHGVAVKAGAAEHEYVAPT-LINMYAECGDVRAARVMFDRMDGECVVSYNAMI 211

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNH--FKSMKKF 401
           +   ++    EAL LF  M+   +KP  +T++ VL AC+  G +E G W H   + M+  
Sbjct: 212 TASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMR-- 269

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
             +D   +  + +ID+  + G L++A+ +  +M    D   W  ++ A   H     AI 
Sbjct: 270 --LDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESR-DKQAWSVMMVAYANHGYGREAIS 326

Query: 462 AAKKILNLDPQDPGTYILLSNIYANSQKW--DEVAEVRKTMRARGIT---KEPGC 511
             ++ +      P     L  +YA S      E  +   +MR  GI    K  GC
Sbjct: 327 MFEE-MKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGC 380


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/618 (37%), Positives = 345/618 (55%), Gaps = 52/618 (8%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   GVR DS TY   +  C    ++E  K +H  V+      + ++ + ++ ++ K   
Sbjct: 282 MHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGC 341

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            +EA+ +F  + +RN VSWT +I  +       +++EL   M  E +  + F  + ++  
Sbjct: 342 FKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISG 401

Query: 185 CDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN---------- 231
           C +   + +  QLH   +K G    V V ++LI +YAK G L+NAE +FN          
Sbjct: 402 CCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSW 461

Query: 232 ---------------------EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGF 269
                                +M TR+++ WN+++G + Q+   ++ L +Y  M      
Sbjct: 462 TGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDV 521

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDA 325
             D  T  ++ R C  +   +LG Q+  H +K    LIL+    NA++ MY KCG + +A
Sbjct: 522 IPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVG--LILDTSVVNAVITMYSKCGRISEA 579

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
              F  + +KD++SW+ MI+G +Q+G  ++A+++F+ +     KP+YI+ V VL  CSH+
Sbjct: 580 RKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHS 639

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
           G VE+G  +F  MK+ + I PG EH+SCM+DLLGRAG L EA  LI EMP +P A  W A
Sbjct: 640 GLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGA 699

Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
           LL ACK H N DLA  AAK + +LD    G Y+LL+ +YA++ K D+ A+VRK MR +GI
Sbjct: 700 LLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGI 759

Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
            K PG SW+EVN ++H F   D SHPQ+  I + L  L++K+  +GY          +  
Sbjct: 760 KKSPGYSWMEVNNRVHVFKAEDVSHPQVIAIREKLDELMEKIAHLGY----------VRT 809

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           E     I +HSEKLA+ FG+MSL     I I KNLRIC DCHT  KL + + ++  VIRD
Sbjct: 810 ESPRSEI-HHSEKLAVAFGIMSLPAWMPIHIMKNLRICDDCHTVIKLISTVTDREFVIRD 868

Query: 626 PIRYHHFQDGNCSCGDYW 643
            +R+HHF+ G+CSC DYW
Sbjct: 869 GVRFHHFKGGSCSCMDYW 886



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 165/297 (55%), Gaps = 9/297 (3%)

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
           P     N +L  + K   ++ A  +F  MPER+VVSW  +ISA   +    +AL++++ M
Sbjct: 223 PTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDM 282

Query: 167 LREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
             +GVRP+  TY++ L AC  L  L   +QLH  +I+     D +V SA++++YAK G  
Sbjct: 283 HGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCF 342

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
           + A+ VF+ +  R+ V W  +IGGF Q     E++ L+ +M+    A DQ  L +++  C
Sbjct: 343 KEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGC 402

Query: 284 TGLALLELGTQVHVHVLKYDHD--LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
                + LG+Q+H   LK  H   ++++N+L+ MY KCG+L++A  +F+ M ++D++SW+
Sbjct: 403 CNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWT 462

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
            MI+  +Q G   +A + F+ M       N IT   +L A    G  EDG   +  M
Sbjct: 463 GMITAYSQVGNIAKAREFFDDMSTR----NVITWNAMLGAYIQHGAEEDGLKMYSDM 515



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 212/447 (47%), Gaps = 47/447 (10%)

Query: 43  LDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAE--LIKCCLARHAVEEAK-LVHNH 99
           L D  R C  R      + +H+ +   V   SV + +  L+   L+  A+ +A+ L+ + 
Sbjct: 28  LADALRSCGARSALTGARTLHS-RLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDE 86

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           +     EP     NI++N + K   L +A  LF +MP R+V SW T++S Y  +     A
Sbjct: 87  IT----EPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNA 142

Query: 160 LELLIFMLREG-VRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALID 215
           L++ + M + G   PN FT+  V+++C +L    +  QL   + K   + D  V++AL+D
Sbjct: 143 LDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVD 202

Query: 216 IYAKLGEL-----------------RNAECV--------------FNEMPTRDLVVWNSI 244
           +  + G +                 RN+  V              F  MP RD+V WN +
Sbjct: 203 MLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMV 262

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YD 303
           I   +++  V EAL++   M   G   D +T TS L AC  L+ LE G Q+HV V++   
Sbjct: 263 ISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLP 322

Query: 304 H-DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           H D  + +A++++Y KCG  ++A  VFS +  ++ +SW+ +I G  Q G   E+++LF  
Sbjct: 323 HIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQ 382

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           M+   +  +   +  ++  C +   +  G +   S+    G        + +I +  + G
Sbjct: 383 MRAELMAVDQFALATLISGCCNTMDICLG-SQLHSLCLKSGHTRAVVVSNSLISMYAKCG 441

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGA 449
            LQ A +LI     E D V+W  ++ A
Sbjct: 442 NLQNA-ELIFNFMAERDIVSWTGMITA 467



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 160/359 (44%), Gaps = 49/359 (13%)

Query: 37  RNSSS---LLDDFTRF-CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEE 92
           RNS S   L+  F ++ C+      +++  + M+   +  D    A LI  C     +  
Sbjct: 355 RNSVSWTVLIGGFLQYGCFSE----SVELFNQMRAELMAVDQFALATLISGCCNTMDICL 410

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
              +H+  L  G      + N L++M+ K   L+ A+++F+ M ER++VSWT MI+AY  
Sbjct: 411 GSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQ 470

Query: 153 AKMNDKA-------------------------------LELLIFMLRE-GVRPNMFTYSA 180
                KA                               L++   ML E  V P+  TY  
Sbjct: 471 VGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVT 530

Query: 181 VLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           + R C  +   +   Q+    +KVG   D  V +A+I +Y+K G +  A   F+ +  +D
Sbjct: 531 LFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKD 590

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           LV WN++I G++Q+    +A+ ++  +   G   D  +  +VL  C+   L+E G + + 
Sbjct: 591 LVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEG-KFYF 649

Query: 298 HVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRMIQKDVIS-WSTMISGLAQNG 351
            ++K DH++       + ++D+  + G L +A ++   M  K     W  ++S    +G
Sbjct: 650 DMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHG 708


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/588 (38%), Positives = 331/588 (56%), Gaps = 41/588 (6%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  +L  G      L   L   +     L  +  LF + P  NV  WT +I+A+    +
Sbjct: 42  IHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDL 101

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALID 215
              AL     ML   ++PN FT S++L+AC +L   R +H   IK G  S ++V + L+D
Sbjct: 102 FHHALSYYSQMLTHPIQPNAFTLSSLLKAC-TLHPARAVHSHAIKFGLSSHLYVSTGLVD 160

Query: 216 IYAKLGELRNAECVFNEMPTR-------------------------------DLVVWNSI 244
            YA+ G++ +A+ +F+ MP R                               D+V WN +
Sbjct: 161 AYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVM 220

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAA-------DQSTLTSVLRACTGLALLELGTQVHV 297
           I G+AQ+   +EAL  +++M              ++ T+ +VL +C  +  LE G  VH 
Sbjct: 221 IDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHS 280

Query: 298 HVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           +V       ++ +  AL+DMYCKCGSLEDA  VF  M  KDV++W++MI G   +G+S E
Sbjct: 281 YVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDE 340

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           AL+LF  M    +KP+ IT V VL AC+HAG V  GW  F SMK  YG++P  EHY CM+
Sbjct: 341 ALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMV 400

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           +LLGRAG++QEA  L+  M  EPD V W  LL AC++H N  L    A+ +++      G
Sbjct: 401 NLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSG 460

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
           TY+LLSN+YA ++ W  VA+VR  M+  G+ KEPGCS IEV  ++H F   D  HP+   
Sbjct: 461 TYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHPRSKD 520

Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
           I   L+ +   L    Y P T+ VL D+  ++KE S++ HSEKLA+ FGL+S + G  I+
Sbjct: 521 IYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLISTSPGAAIK 580

Query: 596 IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           I KNLR+C DCH   K+ +K+  + I++RD  R+HHF++G+CSC DYW
Sbjct: 581 IVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 157/359 (43%), Gaps = 76/359 (21%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M  H ++ ++ T + L+K C     +  A+ VH+H +  G     ++   L++ + +   
Sbjct: 112 MLTHPIQPNAFTLSSLLKAC----TLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGD 167

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKAL------------------------ 160
           +  AQ LFD MPER++VS+T M++ Y    M  +A                         
Sbjct: 168 VASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQH 227

Query: 161 ----ELLIFMLREG----------VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGF 203
               E L+F  +            VRPN  T  AVL +C  +  L   + +H  +   G 
Sbjct: 228 GCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGI 287

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
           + +V V +AL+D+Y K G L +A  VF+ M  +D+V WNS+I G+  +   DEAL L+  
Sbjct: 288 KVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHE 347

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLE 323
           M   G      T  +VL AC    L+  G +V      +D                 S++
Sbjct: 348 MCCIGVKPSDITFVAVLTACAHAGLVSKGWEV------FD-----------------SMK 384

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
           D        ++  V  +  M++ L + G  QEA  L  SM+V   +P+ +    +L+AC
Sbjct: 385 DGYG-----MEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEV---EPDPVLWGTLLWAC 435



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 134/311 (43%), Gaps = 48/311 (15%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           L Q+H  +++ G      +   L   YA LG L ++  +F+  P  ++ +W  II   A 
Sbjct: 39  LLQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAH 98

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY-------- 302
                 AL+ Y +M       +  TL+S+L+ACT    L     VH H +K+        
Sbjct: 99  FDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHAIKFGLSSHLYV 154

Query: 303 -------------------------DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
                                    +  L+   A+L  Y K G L +A  +F  M  KDV
Sbjct: 155 STGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDV 214

Query: 338 ISWSTMISGLAQNGYSQEALKLFES-------MKVSRIKPNYITIVGVLFACSHAGFVED 390
           + W+ MI G AQ+G   EAL  F             +++PN IT+V VL +C   G +E 
Sbjct: 215 VCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALEC 274

Query: 391 G-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           G W H  S  +  GI       + ++D+  + G L++A K+   M  + D V W +++  
Sbjct: 275 GKWVH--SYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGK-DVVAWNSMIMG 331

Query: 450 CKVHRNTDLAI 460
             +H  +D A+
Sbjct: 332 YGIHGFSDEAL 342



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 21/218 (9%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           VR + +T   ++  C    A+E  K VH++V + G +    +   L++M+ K   LE+A+
Sbjct: 252 VRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDAR 311

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            +FD M  ++VV+W +MI  Y     +D+AL+L   M   GV+P+  T+ AVL AC    
Sbjct: 312 KVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTAC---- 367

Query: 190 ILRQLHCGIIK------------VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR- 236
                H G++              G E  V     ++++  + G ++ A  +   M    
Sbjct: 368 ----AHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEP 423

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           D V+W +++     +S+V     + + +   G A+  +
Sbjct: 424 DPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGT 461


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/472 (43%), Positives = 303/472 (64%), Gaps = 5/472 (1%)

Query: 176 FTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235
           FTYS +L A   +I   ++H  ++K  +E    V +AL+D Y KLG++  A  VF+ +  
Sbjct: 2   FTYSVILTAL-PVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDD 60

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL-ALLELGTQ 294
           +D+V W++++ G+AQ  + + A+ ++  + + G   ++ T +S+L  C    A +  G Q
Sbjct: 61  KDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQ 120

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
            H   +K   D  L +++ALL MY K G++E A  VF R  +KD++SW++MISG AQ+G 
Sbjct: 121 FHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQ 180

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
           + +AL +F+ MK  ++K + +T +GV  AC+HAG VE+G  +F  M +   I P +EH S
Sbjct: 181 AMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNS 240

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           CM+DL  RAG+L++A+K+I  MP    +  WR +L AC+VH+ T+L   AA+KI+ + P+
Sbjct: 241 CMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPE 300

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           D   Y+LLSN+YA S  W E A+VRK M  R + KEPG SWIEV  + ++F   D SHP 
Sbjct: 301 DSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPL 360

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
            D+I   L+ L  +L  +GY PDT+YVLQD++ E KE  +  HSE+LAI FGL++  +G 
Sbjct: 361 KDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGS 420

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF-QDGNCSCGDYW 643
            + I KNLR+CGDCH   KL AK+E + IV+RD  R+HHF  DG CSCGD+W
Sbjct: 421 PLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 472



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 132/244 (54%), Gaps = 7/244 (2%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           VH  V+   +E  + +   LL+ +VK   +EEA  +F  + ++++V+W+ M++ Y     
Sbjct: 19  VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGE 78

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRAC----DSLIILRQLHCGIIKVGFESDVFVRS 211
            + A+++   + + G++PN FT+S++L  C     S+   +Q H   IK   +S + V S
Sbjct: 79  TEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSS 138

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
           AL+ +YAK G + +AE VF     +DLV WNS+I G+AQ+    +AL+++K MK+     
Sbjct: 139 ALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKM 198

Query: 272 DQSTLTSVLRACTGLALLELGTQ---VHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSV 328
           D  T   V  ACT   L+E G +   + V   K       N+ ++D+Y + G LE AM V
Sbjct: 199 DGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKV 258

Query: 329 FSRM 332
              M
Sbjct: 259 IENM 262



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 95/204 (46%), Gaps = 22/204 (10%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHA-VEEAKLVHNHVLSGGFEPETFLVNILL 116
           A+K    +   G++ +  T++ ++  C A +A + + K  H   +    +    + + LL
Sbjct: 82  AIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALL 141

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
            M+ K   +E A+ +F +  E+++VSW +MIS Y       KAL++   M +  V+ +  
Sbjct: 142 TMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGV 201

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFES-DVFVR-----------SALIDIYAKLGELR 224
           T+  V  AC         H G+++ G +  D+ VR           S ++D+Y++ G+L 
Sbjct: 202 TFIGVFAAC--------THAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLE 253

Query: 225 NAECVFNEMPT-RDLVVWNSIIGG 247
            A  V   MP      +W +I+  
Sbjct: 254 KAMKVIENMPNPAGSTIWRTILAA 277


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/527 (40%), Positives = 333/527 (63%), Gaps = 10/527 (1%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF--MLREGV-RPNMFTYSAV 181
           ++ A+ LF Q+   N+ SW +MI   C          +++F  M+R G   PN FT + V
Sbjct: 40  IDYARKLFSQIQRPNIFSWNSMIRG-CSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFV 98

Query: 182 LRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
           L+AC  +  L   +Q+H  ++K GF S  FV +AL++ YAK  ++  A  VF+E+  R+L
Sbjct: 99  LKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNL 158

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           V W+++I G+A+   V+EAL L++ M++AG   D+ T+ SV+ AC     L+ G  VH +
Sbjct: 159 VAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAY 218

Query: 299 VLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           + K   + DL L+ AL++MY KCG +E A  VF  M  KD  +WS+MI GLA NG +++A
Sbjct: 219 INKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDA 278

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           L+ F  M+ +++KPN++T +GVL AC+H+G V +G  ++ SM +F GI P  E Y CM+D
Sbjct: 279 LEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEF-GIVPSMELYGCMVD 337

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476
           LL RA  +++A  L+  MP  P+ V WR LL  CK  +N D +   A+++L L+P +   
Sbjct: 338 LLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAEN 397

Query: 477 YILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKI 536
           YILLSN+YA+  +W+++++VRK M+  GI   PGCS IEV+  +H F + D SHP+  ++
Sbjct: 398 YILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEV 457

Query: 537 NKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRI 596
            + L+ + +++  VG+ P  + VL ++  E+KE+++  HSE+LAI +GL+       IRI
Sbjct: 458 REILRDISKRVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRI 517

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KNLR+CGDCH   K+ +    + I++RD +R+H F +G+CSC D+W
Sbjct: 518 VKNLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKFVNGSCSCRDFW 564



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 151/280 (53%), Gaps = 6/280 (2%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           ++ T A ++K C    A+EE + VH +VL  GF    F+   L+N + K   +  A  +F
Sbjct: 91  NTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVF 150

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLI 189
           D++ +RN+V+W+TMIS Y    + ++AL L   M + GV P+  T  +V+ AC    +L 
Sbjct: 151 DEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALD 210

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
             + +H  I K   E+D+ + +AL+++YAK G +  A+ VF+ MP +D   W+S+I G A
Sbjct: 211 TGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLA 270

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLI 307
            N   ++AL  + RM+ A    +  T   VL AC    L+  G +    +L++     + 
Sbjct: 271 INGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSME 330

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
           L   ++D+ C+   +EDA ++   M I  + + W T++ G
Sbjct: 331 LYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVG 370



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 104/211 (49%), Gaps = 4/211 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     MQ  GV  D VT   +I  C A  A++  K VH ++     E +  L   L+N
Sbjct: 177 ALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVN 236

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +E A+ +FD MP ++  +W++MI       + + ALE    M    V+PN  T
Sbjct: 237 MYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVT 296

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +  VL AC    ++   R+    +++ G    + +   ++D+  +   + +A  +   MP
Sbjct: 297 FIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMP 356

Query: 235 -TRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
            + + V+W +++ G  ++ ++D++  + +R+
Sbjct: 357 ISPNPVIWRTLLVGCKKSKNLDKSEVVAQRL 387



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 35/166 (21%)

Query: 320 GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY-SQEALKLFESM-KVSRIKPNYITIVG 377
           G ++ A  +FS++ + ++ SW++MI G +Q+   S+E + LF  M +     PN  T+  
Sbjct: 38  GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 97

Query: 378 VLFACSHAGFVEDGWN-HFKSMKKFYGIDPGRE--------------------------- 409
           VL ACS    +E+G   H   +K  +G  P  E                           
Sbjct: 98  VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN 157

Query: 410 --HYSCMIDLLGRAGKLQEAVKLIHEMPYE---PDAVTWRALLGAC 450
              +S MI    R G + EA+ L  +M      PD VT  +++ AC
Sbjct: 158 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISAC 203


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/560 (40%), Positives = 326/560 (58%), Gaps = 7/560 (1%)

Query: 91  EEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
           ++ K +H  VL  GF  +  L+  LL   V    +  A+ +FD+M +  +  W T+   Y
Sbjct: 25  KQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGY 84

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDV 207
              ++  ++L L   M   GVRP+ FTY  V++A   L        LH  ++K GF    
Sbjct: 85  VRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLG 144

Query: 208 FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
            V + L+ +Y K GEL +AE +F  M  +DLV WN+ +    Q  +   AL  + +M   
Sbjct: 145 IVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCAD 204

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDA 325
               D  T+ S+L AC  L  LE+G +++    K   D ++I+ NA LDM+ KCG+ E A
Sbjct: 205 AVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAA 264

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F  M Q++V+SWSTMI G A NG S+EAL LF +M+   ++PNY+T +GVL ACSHA
Sbjct: 265 RVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHA 324

Query: 386 GFVEDGWNHFKSMKKF--YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
           G V +G  +F  M +     ++P +EHY+CM+DLLGR+G L+EA + I +MP EPD   W
Sbjct: 325 GLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIW 384

Query: 444 RALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503
            ALLGAC VHR+  L    A  ++   P     ++LLSNIYA + KWD V +VR  MR  
Sbjct: 385 GALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKL 444

Query: 504 GITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDL 563
           G  K    S +E   +IH FN  D SHPQ   I + L  +++K+  +GY PDT  V  D+
Sbjct: 445 GTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDV 504

Query: 564 EGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVI 623
           E E+KE S+ +HSEKLAI FGL+    G  IR+ KNLR C DCH F+K  + + +  I++
Sbjct: 505 EMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIM 564

Query: 624 RDPIRYHHFQDGNCSCGDYW 643
           RD  R+HHF++G CSC ++W
Sbjct: 565 RDKNRFHHFRNGVCSCKEFW 584



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 97/212 (45%), Gaps = 23/212 (10%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++  + M    V+ DS T   ++  C    ++E  + +++       +    + N  L+
Sbjct: 194 ALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLD 253

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           MH+K    E A+VLF++M +RNVVSW+TMI  Y     + +AL L   M  EG+RPN  T
Sbjct: 254 MHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVT 313

Query: 178 YSAVLRACDSLIILRQLHCGIIKVG--------------FESDVFVRSALIDIYAKLGEL 223
           +  VL AC         H G++  G               E      + ++D+  + G L
Sbjct: 314 FLGVLSACS--------HAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLL 365

Query: 224 RNAECVFNEMPTR-DLVVWNSIIGGFAQNSDV 254
             A     +MP   D  +W +++G  A + D+
Sbjct: 366 EEAYEFIKKMPVEPDTGIWGALLGACAVHRDM 397


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/584 (35%), Positives = 342/584 (58%), Gaps = 6/584 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+  + +M   G   + VT+   +  C      E+ +++H  V+  G      + N L++
Sbjct: 329 ALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVS 388

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   + E++ +  QMP R+VV+W  +I  Y + +  DKAL     M  EGV  N  T
Sbjct: 389 MYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYIT 448

Query: 178 YSAVLRAC----DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
             +VL AC    D L   + LH  I+  GFESD  V+++LI +YAK G+L +++ +FN +
Sbjct: 449 VVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL 508

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             R+++ WN+++   A +   +E L L  +M+  G + DQ + +  L A   LA+LE G 
Sbjct: 509 DNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQ 568

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           Q+H   +K  ++HD  + NA  DMY KCG + + + +    + + + SW+ +IS L ++G
Sbjct: 569 QLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHG 628

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           Y +E    F  M    IKP ++T V +L ACSH G V+ G  ++  + + +G++P  EH 
Sbjct: 629 YFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHC 688

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
            C+IDLLGR+G+L EA   I +MP +P+ + WR+LL +CK+H N D    AA+ +  L+P
Sbjct: 689 ICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEP 748

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
           +D   Y+L SN++A + +W++V  VRK M  + I K+  CSW+++  ++ +F + D +HP
Sbjct: 749 EDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHP 808

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
           Q  +I   L+ + + +   GY  DT+  LQD + EQKE ++  HSE+LA+ + LMS  +G
Sbjct: 809 QTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEG 868

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDG 635
            T+RI KNLRIC DCH+  K  +++  + IV+RD  R+HHF+ G
Sbjct: 869 STVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERG 912



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 206/400 (51%), Gaps = 8/400 (2%)

Query: 69  GVRADSVTYAELIKCCLARHAV-EEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           G++  S   A L+  C    ++  E   VH  V   G   + ++   +L+++  + L+  
Sbjct: 36  GIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSC 95

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           ++ +F++MP+RNVVSWT+++  Y D    ++ +++   M  EGV  N  + S V+ +C  
Sbjct: 96  SRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGL 155

Query: 188 L---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L    + RQ+   ++K G ES + V ++LI +   +G +  A  +F++M  RD + WNSI
Sbjct: 156 LKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSI 215

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
              +AQN  ++E+  ++  M+R     + +T++++L     +   + G  +H  V+K  +
Sbjct: 216 AAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGF 275

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           D  + + N LL MY   G   +A  VF +M  KD+ISW+++++    +G S +AL L  S
Sbjct: 276 DSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCS 335

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           M  S    NY+T    L AC    F E G      +    G+   +   + ++ + G+ G
Sbjct: 336 MISSGKSVNYVTFTSALAACFTPDFFEKG-RILHGLVVVSGLFYNQIIGNALVSMYGKIG 394

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           ++ E+ +++ +MP   D V W AL+G      + D A+ A
Sbjct: 395 EMSESRRVLLQMP-RRDVVAWNALIGGYAEDEDPDKALAA 433



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 192/395 (48%), Gaps = 6/395 (1%)

Query: 64  AMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123
            M+  GV  +  + + +I  C         + +   V+  G E +  + N L++M     
Sbjct: 133 GMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMG 192

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS---A 180
            ++ A  +FDQM ER+ +SW ++ +AY      +++  +   M R     N  T S   +
Sbjct: 193 NVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLS 252

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           VL   D     R +H  ++K+GF+S V V + L+ +YA  G    A  VF +MPT+DL+ 
Sbjct: 253 VLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLIS 312

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VH 298
           WNS++  F  +    +AL L   M  +G + +  T TS L AC      E G  +H  V 
Sbjct: 313 WNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVV 372

Query: 299 VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           V    ++ I+ NAL+ MY K G + ++  V  +M ++DV++W+ +I G A++    +AL 
Sbjct: 373 VSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALA 432

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
            F++M+V  +  NYIT+V VL AC   G + +      +     G +      + +I + 
Sbjct: 433 AFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMY 492

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            + G L  +  L + +    + +TW A+L A   H
Sbjct: 493 AKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAHH 526



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 175/327 (53%), Gaps = 20/327 (6%)

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD-SLIILR- 192
           MP RN VSW TM+S      +  + +E    M   G++P+ F  ++++ AC  S  + R 
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 193 --QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
             Q+H  + K G  SDV+V +A++ +Y   G +  +  VF EMP R++V W S++ G++ 
Sbjct: 61  GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 120

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
             + +E +++YK M+  G   ++++++ V+ +C  L    LG Q+   V+K   +  L +
Sbjct: 121 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAV 180

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            N+L+ M    G+++ A  +F +M ++D ISW+++ +  AQNG+ +E+ ++F  M+    
Sbjct: 181 ENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD 240

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG--IDPGREHYSCMIDLLGR----AG 422
           + N  T+  +L    H        +H K  +  +G  +  G +   C+ + L R    AG
Sbjct: 241 EVNSTTVSTLLSVLGHV-------DHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAG 293

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGA 449
           +  EA  +  +MP + D ++W +L+ +
Sbjct: 294 RSVEANLVFKQMPTK-DLISWNSLMAS 319


>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Brachypodium distachyon]
          Length = 515

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/509 (40%), Positives = 313/509 (61%), Gaps = 6/509 (1%)

Query: 141 VSWTTMISAYCDAKMNDKALELLIFM-LREGVRPNMFTYSAVLRACDSLIILRQLHCGII 199
           V++   IS    A ++ +AL L   M    G+  + +T+  +L +   L +         
Sbjct: 7   VAYNAAISRCSRAGLHQRALALFHEMRAARGLPADEYTFPPILNSAALLRVPAAADALHA 66

Query: 200 KVGFESDV---FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
            +     V    V +AL+D YAKL     A  +F+EMP RD+V W S++ G A++   D 
Sbjct: 67  LLLRAGLVAHLHVANALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGSHDA 126

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD--LILNNALLD 314
           AL +Y+ M  +G   D+  + + L +C G   LELG  VH   ++   +  L + N+L+ 
Sbjct: 127 ALRVYRDMVASGVEPDEYVVAAALSSCAGSTTLELGQSVHATAVRLGLEPFLSVGNSLVS 186

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           MY K GSL +A  VF     +  ++W+ +I G AQNG  +E+L+++  M  S  +P+Y+T
Sbjct: 187 MYAKTGSLREARKVFDATRLRCPVTWTALIVGYAQNGRGEESLQVYAEMVHSGCRPDYVT 246

Query: 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
            +G+LFACSHAG V+ G  HFKSM+  +GI PG +HY+CM+D+LGRAG+L EA++L+ + 
Sbjct: 247 FIGLLFACSHAGLVDAGRAHFKSMQADHGITPGPDHYACMVDVLGRAGRLDEAMELLDQS 306

Query: 435 PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494
             + DA  W+ALLGAC+ HRN +LA  AA+ +  LDP D   YI+LSN+Y+  ++W +VA
Sbjct: 307 TMKLDATVWKALLGACRTHRNAELAERAAEMVWRLDPTDAVPYIMLSNLYSRERRWSDVA 366

Query: 495 EVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAP 554
            +R  M++RGI KEPGCSW+  +   H F V D  HP+ D+I + ++ +++K+   G+  
Sbjct: 367 RIRTLMKSRGIAKEPGCSWVVASGVTHLFYVEDRGHPRTDEIYRKVEEMMEKVRAEGFVA 426

Query: 555 DTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTA 614
           DT++ LQD   E +E  + +HSE+LA+ FGL++L  G  +R+ KNLR+CGDCH   K+ A
Sbjct: 427 DTDWALQDEAPEGREKGLAHHSERLAVAFGLLALPAGAPVRVFKNLRVCGDCHVAIKMVA 486

Query: 615 KMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           K+  + I++RD   +HH +DG CSCGDYW
Sbjct: 487 KVYGREIILRDSNCFHHMRDGVCSCGDYW 515



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 160/332 (48%), Gaps = 21/332 (6%)

Query: 23  LTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQC-HGVRADSVTYAELI 81
           + + P VA    I+R S + L             RA+   H M+   G+ AD  T+  ++
Sbjct: 1   MVVPPGVAYNAAISRCSRAGLHQ-----------RALALFHEMRAARGLPADEYTFPPIL 49

Query: 82  KCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVV 141
                      A  +H  +L  G      + N L++ + K S    A+ LFD+MP R+VV
Sbjct: 50  NSAALLRVPAAADALHALLLRAGLVAHLHVANALVDAYAKLSRGGAARALFDEMPRRDVV 109

Query: 142 SWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGI 198
           +WT++++    +  +D AL +   M+  GV P+ +  +A L +C    +L + + +H   
Sbjct: 110 TWTSLLTGLARSGSHDAALRVYRDMVASGVEPDEYVVAAALSSCAGSTTLELGQSVHATA 169

Query: 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEAL 258
           +++G E  + V ++L+ +YAK G LR A  VF+    R  V W ++I G+AQN   +E+L
Sbjct: 170 VRLGLEPFLSVGNSLVSMYAKTGSLREARKVFDATRLRCPVTWTALIVGYAQNGRGEESL 229

Query: 259 NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLD 314
            +Y  M  +G   D  T   +L AC+   L++ G + H   ++ DH +         ++D
Sbjct: 230 QVYAEMVHSGCRPDYVTFIGLLFACSHAGLVDAG-RAHFKSMQADHGITPGPDHYACMVD 288

Query: 315 MYCKCGSLEDAMSVFSRMIQK-DVISWSTMIS 345
           +  + G L++AM +  +   K D   W  ++ 
Sbjct: 289 VLGRAGRLDEAMELLDQSTMKLDATVWKALLG 320


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/583 (35%), Positives = 349/583 (59%), Gaps = 6/583 (1%)

Query: 65   MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
            M   G   DSVT   ++  C         ++VH + +  G   ET L N LL+M+   S 
Sbjct: 509  MWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSD 568

Query: 125  LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
             +    +F  M ++NVVSWT MI++Y  A + DK   LL  M+ +G+RP++F  ++ L A
Sbjct: 569  WQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHA 628

Query: 185  C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
                +SL   + +H   I+ G E  + V +AL+++Y K   +  A  +F+ +  +D++ W
Sbjct: 629  FAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISW 688

Query: 242  NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            N++IGG+++N+  +E+ +L+  M    F  +  T+T +L A   ++ LE G ++H + L+
Sbjct: 689  NTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGREIHAYALR 747

Query: 302  --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
              +  D   +NAL+DMY KCG+L  A  +F R+ +K++ISW+ MI+G   +G+ + A+ L
Sbjct: 748  RGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIAL 807

Query: 360  FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
            FE M+ S I+P+  +   +L+AC H+G   +G   FK+M+K Y I+P  +HY+C++DLL 
Sbjct: 808  FEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLS 867

Query: 420  RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
            R G L+EA++ I  MP EPD+  W +LL  C++H+N  LA   A K+  L+P++ G Y+L
Sbjct: 868  RTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVL 927

Query: 480  LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
            L+NIYA +++W+ V +++  +  RG+ +  G SWIEV  ++H F   + +HP  ++I + 
Sbjct: 928  LANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEF 987

Query: 540  LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
            L  + +++   G+ P   Y L   +    ++++  HS KLA+ FG+++L +G+ IR+ KN
Sbjct: 988  LDDVARRMRQEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLPEGRPIRVTKN 1047

Query: 600  LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
             ++C  CH  AK  +KM N+ I++RD  R+H F+ G CSC  Y
Sbjct: 1048 SKVCSHCHEAAKFISKMCNREIILRDSSRFHRFEGGRCSCRGY 1090



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 130/462 (28%), Positives = 211/462 (45%), Gaps = 52/462 (11%)

Query: 26  TPPVASCNTITRN--SSSLLDDFT----RFCYQRDLPRAMKAMHAMQCHGVRADSVTYAE 79
            P  A  +  T+N  S +L  D      R C   DL  A++ + +     VR    +Y  
Sbjct: 47  APTAAPSSWSTKNPPSRALSSDVNLRIQRLCQAGDLAGALRLLGSDGGVDVR----SYCM 102

Query: 80  LIKCCLARHAVEEAKLVH------NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFD 133
           +++ C    ++E AK  H      +   +GG    + L   L+  ++K   L EA+ +FD
Sbjct: 103 VVQLCGEERSLEAAKRAHALIRASSAAATGG--KGSVLGKRLVLAYLKCGDLGEARTVFD 160

Query: 134 QMPER--NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL 191
            MP +  +V  WT+++SAY  A    +A+ L   M   GV P+    S VL+   SL  L
Sbjct: 161 GMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSL 220

Query: 192 RQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
            +   +H  + K+G      V +ALI +Y++ G + +A  VF+ M  RD + WNS+IGG 
Sbjct: 221 TEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGC 280

Query: 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD----- 303
             N     A++L+ +M   G      T+ SVL AC GL    +G  VH + +K       
Sbjct: 281 FSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGL 340

Query: 304 -------HDLILNNALLDMYCKCGSLEDAMSVFSRMIQK-DVISWSTMISGLAQNGYSQE 355
                   D  L + L+ MY KCG +  A  VF  M  K +V  W+ ++ G A+ G  +E
Sbjct: 341 DSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEE 400

Query: 356 ALKLFESMKVSRIKPNYITIVGVL-----FACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
           +L LF  M    I P+   I  +L      +C+  G V  G+           +  G + 
Sbjct: 401 SLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGY--------IVKLGFGAQC 452

Query: 411 YSC--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
             C  +I    ++  + +AV + + MP + D ++W +++  C
Sbjct: 453 AVCNALISFYAKSNMIGDAVLVFNRMPRQ-DTISWNSVISGC 493



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/405 (28%), Positives = 181/405 (44%), Gaps = 26/405 (6%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE----------PETFLVNI 114
           M   G    SVT   ++  C         K VH + +  G             +  L + 
Sbjct: 296 MWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSK 355

Query: 115 LLNMHVKFSLLEEAQVLFDQMPER-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
           L+ M+VK   +  A+ +FD M  + NV  W  ++  Y      +++L L + M   G+ P
Sbjct: 356 LVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAP 415

Query: 174 NMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +    S +L+    L   R     H  I+K+GF +   V +ALI  YAK   + +A  VF
Sbjct: 416 DEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVF 475

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           N MP +D + WNS+I G + N    EA+ L+ RM   G   D  TL SVL AC       
Sbjct: 476 NRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWF 535

Query: 291 LGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G  VH + +K     +  L NALLDMY  C   +    +F  M QK+V+SW+ MI+   
Sbjct: 536 AGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYM 595

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
           + G   +   L + M +  I+P+   +   L    HA   ++     KS+   Y I  G 
Sbjct: 596 RAGLFDKVAGLLQEMVLDGIRPDVFAVTSAL----HAFAGDESLKQGKSVHG-YTIRNGM 650

Query: 409 EHY----SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           E      + ++++  +   ++EA +LI +     D ++W  L+G 
Sbjct: 651 EKLLPVANALMEMYVKCRNVEEA-RLIFDRVTNKDVISWNTLIGG 694


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/575 (38%), Positives = 354/575 (61%), Gaps = 25/575 (4%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVN--ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTM 146
            ++  K VH H+++ G    T+ ++  +L++  + F+    A  +F+ +P   +  + T+
Sbjct: 21  TLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFT---HALSIFNHIPNPTIFLYNTL 77

Query: 147 ISAYCDAKMNDK-ALELLIFML-REGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIK- 200
           IS+  + K +   A  L   +L    ++PN FT+ ++ +AC S   LR    LH  ++K 
Sbjct: 78  ISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHTHVLKF 137

Query: 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS-----DVD 255
           +    D FV++AL++ YAK G++     +FN++   DL  WNSI+  +  NS     DV 
Sbjct: 138 LEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVHNSGAICEDVS 197

Query: 256 ---EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNN-- 310
              E L L+  M+++   A++ TL +++ AC  L  L  G   HV+VLK  H+L LN+  
Sbjct: 198 LSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLK--HNLKLNHFV 255

Query: 311 --ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
             AL+DMY KCG L+ A  +F ++  +D + ++ MI G A +GY  +AL LF+ M +  +
Sbjct: 256 GTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGL 315

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
            P+ +T+V  + +CSH G VE+G + F+SMK+ YG++P  EHY C++DLLGRAG+L+EA 
Sbjct: 316 APDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAE 375

Query: 429 KLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
           + +  MP +P+AV WR+LLGA +VH N ++     K ++ L+P+  G Y+LLSN+YA+  
Sbjct: 376 ERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASIN 435

Query: 489 KWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLV 548
           +WD+V  VRK M+  GI K PG S +EV   +H F + D +HP+  +I   L+ + ++L 
Sbjct: 436 RWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLH 495

Query: 549 GVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHT 608
             G+ P T  VL D+E E+KED++ YHSE+LAI F L++      IRI KNLR+CGDCHT
Sbjct: 496 EYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHT 555

Query: 609 FAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +KL +K+  + I++RD  R+HHF++G CSC DYW
Sbjct: 556 SSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 153/299 (51%), Gaps = 18/299 (6%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP--ETFLVNILLNMHVKFSLLEE 127
           ++ +  T+  L K C ++  +   + +H HVL    EP  + F+   LLN + K   +  
Sbjct: 104 LKPNGFTFPSLFKACGSQPWLRHGRALHTHVLK-FLEPTCDPFVQAALLNYYAKCGKVGA 162

Query: 128 AQVLFDQMPERNVVSWTTMISAYC--------DAKMNDKALELLIFMLREGVRPNMFTYS 179
            + LF+Q+ + ++ SW +++SAY         D  ++ + L L I M +  ++ N  T  
Sbjct: 163 CRYLFNQISKPDLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLV 222

Query: 180 AVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           A++ AC  L  L Q    H  ++K   + + FV +ALID+Y+K G L  A  +F+++P R
Sbjct: 223 ALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHR 282

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           D + +N++IGGFA +    +AL+L+K+M   G A D  TL   + +C+ + L+E G  V 
Sbjct: 283 DTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVF 342

Query: 297 ---VHVLKYDHDLILNNALLDMYCKCGSLEDAMS-VFSRMIQKDVISWSTMISGLAQNG 351
                V   +  L     L+D+  + G L +A   V +  ++ + + W +++     +G
Sbjct: 343 ESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHG 401



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 17/237 (7%)

Query: 21  FSLTITPPVASCNTI----TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVT 76
           F+    P +AS N+I      NS ++ +D +           +     MQ   ++A+ VT
Sbjct: 167 FNQISKPDLASWNSILSAYVHNSGAICEDVSLSL------EVLTLFIEMQKSLIKANEVT 220

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
              LI  C    A+ +    H +VL    +   F+   L++M+ K   L+ A  LFDQ+P
Sbjct: 221 LVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLP 280

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHC 196
            R+ + +  MI  +       +AL+L   M  EG+ P+  T    + +C  + ++ +  C
Sbjct: 281 HRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEE-GC 339

Query: 197 GIIK-----VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGG 247
            + +      G E  +     L+D+  + G LR AE     MP + + V+W S++G 
Sbjct: 340 DVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGA 396


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/603 (38%), Positives = 342/603 (56%), Gaps = 12/603 (1%)

Query: 51  YQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           + R    A+     M+   V  +  T+  + K   + H     K +H   L GG   + F
Sbjct: 86  HNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGGNILDVF 145

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS-AYCDAKMNDKALELLIFMLRE 169
           +     +M+ K  L  EA+ +FD+MP RN+ +W   +S A  D +  D       F+  +
Sbjct: 146 VGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVD 205

Query: 170 GVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           G  PN  T+ A L AC  ++ L   RQLH  I++  +  DV V + LID Y K G++ ++
Sbjct: 206 G-EPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSS 264

Query: 227 ECVFNEMPT--RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
           E VF+ + +  R++V W S++    QN + + A  ++ + ++     D   ++SVL AC 
Sbjct: 265 ELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQARKEVEPTD-FMISSVLSACA 323

Query: 285 GLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            L  LELG  VH   LK   + ++ + +AL+D+Y KCGS+E A  VF  M ++++++W+ 
Sbjct: 324 ELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPERNLVTWNA 383

Query: 343 MISGLAQNGYSQEALKLFESMKVSR--IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           MI G A  G    AL LF+ M      I  +Y+T+V VL ACS AG VE G   F+SM+ 
Sbjct: 384 MIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQIFESMRG 443

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            YGI+PG EHY+C++DLLGR+G +  A + I  MP  P    W ALLGACK+H  T L  
Sbjct: 444 RYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGALLGACKMHGKTKLGK 503

Query: 461 CAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQI 520
            AA+K+  LDP D G +++ SN+ A++ +W+E   VRK MR  GI K  G SW+ V  ++
Sbjct: 504 IAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRDIGIKKNVGYSWVAVKNRV 563

Query: 521 HAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLA 580
           H F   DS H +  +I   L  L  ++   GY PD N  L DLE E+K   + YHSEK+A
Sbjct: 564 HVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANLSLFDLEEEEKASEVWYHSEKIA 623

Query: 581 IVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
           + FGL++L +G  IRI KNLRIC DCH+  K  +K+  + I++RD  R+H F+DG CSC 
Sbjct: 624 LAFGLITLPRGVPIRITKNLRICIDCHSAIKFISKIVGREIIVRDNNRFHRFKDGWCSCK 683

Query: 641 DYW 643
           DYW
Sbjct: 684 DYW 686



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 133/437 (30%), Positives = 220/437 (50%), Gaps = 31/437 (7%)

Query: 93  AKLVHNHVLSGGFEP-ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
            + VH H+L     P  +FL N L+NM+ K  L   AQ++      R VV+WT++IS   
Sbjct: 26  GRAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGCV 85

Query: 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVF 208
             +    AL     M RE V PN FT+  V +A  SL   +  +QLH   +K G   DVF
Sbjct: 86  HNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGGNILDVF 145

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           V  +  D+Y+K G    A  +F+EMP R+L  WN+ +    Q+    +A+  +K+     
Sbjct: 146 VGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVD 205

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAM 326
              +  T  + L AC  +  LELG Q+H  ++  +Y  D+ + N L+D Y KCG +  + 
Sbjct: 206 GEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSE 265

Query: 327 SVFSRM--IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
            VFSR+   +++V+SW ++++ L QN   + A  +F   +   ++P    I  VL AC+ 
Sbjct: 266 LVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQAR-KEVEPTDFMISSVLSACAE 324

Query: 385 AGFVEDGWN-HFKSMKK------FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
            G +E G + H  ++K       F G        S ++DL G+ G ++ A ++  EMP E
Sbjct: 325 LGGLELGRSVHALALKACVEENIFVG--------SALVDLYGKCGSIEYAEQVFREMP-E 375

Query: 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA--- 494
            + VTW A++G      + D+A+   +++ +       +Y+ L ++ +   +   V    
Sbjct: 376 RNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGL 435

Query: 495 EVRKTMRAR-GITKEPG 510
           ++ ++MR R GI  EPG
Sbjct: 436 QIFESMRGRYGI--EPG 450


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/598 (39%), Positives = 337/598 (56%), Gaps = 43/598 (7%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQMPERNVVSWTTM 146
           ++ + K  H H+++ G        N LL + +   F  L  A  LFDQ+P+ +V  + TM
Sbjct: 27  SMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTM 86

Query: 147 ISAYCDAKMND-KALELLIFMLR-EGVRPNMFTYSAVLRAC-DSLIILR--QLHCGIIKV 201
           I A+     +   ++ + + M+R  G  PN +T+  V +AC + L +L   Q+    IK+
Sbjct: 87  IKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKI 146

Query: 202 GFESDVFVRSALIDIYAKLG-------------------------------ELRNAECVF 230
           G ES++FV +A+I +YA  G                               E+  A+ +F
Sbjct: 147 GLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMF 206

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           +EM  RD+V W +II G+ Q     EAL+L+  M + G   ++ TL S L AC  L  L+
Sbjct: 207 DEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALD 266

Query: 291 LGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVF--SRMIQKDVISWSTMISG 346
            G  +HV++ K +  +   L  +LLDMY KCG ++ A  VF     ++  V  W+ MI G
Sbjct: 267 QGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGG 326

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
            A +G S+EA+ LFE MKV ++ PN +T V +L ACSH   VE+G  +FKSM   YGI+P
Sbjct: 327 YAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEP 386

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
             EHY CM+DLLGR+G L+EA + +  MP  PDA  W ALLGAC++H++ +      K I
Sbjct: 387 EIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKII 446

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
             LD    G ++LL+N+Y+ S +WDE   VR+ +   G  K PGCS IE+N   H F V 
Sbjct: 447 KELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVG 506

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQ-KEDSIQYHSEKLAIVFGL 585
           D SHPQ  ++   L  +  KL   GY P+   VL D++ E+ KE ++  HSEKLAI FGL
Sbjct: 507 DRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGL 566

Query: 586 MSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           ++   G  IRI KNLR+C DCH   K  +K+  + I++RD IRYHHF+DG CSC DYW
Sbjct: 567 INTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 624



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 154/321 (47%), Gaps = 40/321 (12%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           ++  G   +  T+  + K C     V E + +  H +  G E   F+ N ++ M+  + L
Sbjct: 108 VRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGL 167

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDA-----------KMNDK--------------- 158
           ++EA+ +FD   ++++ SW  MI  Y  +           +M+++               
Sbjct: 168 VDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQV 227

Query: 159 -----ALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVR 210
                AL+L   ML+ G  PN FT ++ L AC +L+ L   R +H  I K   + +  + 
Sbjct: 228 GCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLL 287

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVV--WNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           ++L+D+YAK GE+  A  VF++     L V  WN++IGG+A +    EA++L+++MK   
Sbjct: 288 ASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEK 347

Query: 269 FAADQSTLTSVLRACTGLALLELGT---QVHVHVLKYDHDLILNNALLDMYCKCGSLEDA 325
            + ++ T  ++L AC+   L+E G    +        + ++     ++D+  + G L++A
Sbjct: 348 VSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEA 407

Query: 326 -MSVFSRMIQKDVISWSTMIS 345
             +VF+  +  D   W  ++ 
Sbjct: 408 EETVFNMPMAPDATIWGALLG 428


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/598 (37%), Positives = 347/598 (58%), Gaps = 46/598 (7%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE--AQVLFDQMPERNVVSWTTMI 147
           + + K +H HVL  G +   +++  L+    K  +  +  A+ + + +  RN   WT +I
Sbjct: 62  LNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVI 121

Query: 148 SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKV-GF 203
             Y      D+A+ +   M +E + P  FT+SA+L+AC ++  L   RQ H    ++ GF
Sbjct: 122 RGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGF 181

Query: 204 ------------------------------ESDVFVRSALIDIYAKLGELRNAECVFNEM 233
                                         E DV   + LI  YA++G +  A  +F  +
Sbjct: 182 CFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESL 241

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           PT+D+V W +++ GFAQN+   EAL  + RM+++G  AD+ T+   + AC  L   +   
Sbjct: 242 PTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYAD 301

Query: 294 QVHVHVLK------YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
           +  V + +       DH +++ +AL+DMY KCG++E+A++VF  M  K+V ++S+MI GL
Sbjct: 302 RA-VQIAQKSGYSPSDH-VVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGL 359

Query: 348 AQNGYSQEALKLFESMKV-SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
           A +G +QEAL LF  M   + IKPN +T VG L ACSH+G V+ G   F SM + +G+ P
Sbjct: 360 ATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQP 419

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
            R+HY+CM+DLLGR G+LQEA++LI  M  EP    W ALLGAC++H N ++A  AA+ +
Sbjct: 420 TRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHL 479

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSW-IEVNKQIHAFNV 525
             L+P   G YILLSN+YA++  W  V  VRK ++ +G+ K P  SW ++ N Q+H F  
Sbjct: 480 FELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFP 539

Query: 526 ADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGL 585
            + +HP  +KI   L+ L+++L  +GY PD + V  D+    K   +  H+EKLA+ F L
Sbjct: 540 GNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSL 599

Query: 586 MSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           ++  +  TI I KNLR+C DCH F +L +++  + I++RD +R+HHF+ G+CSCGD+W
Sbjct: 600 LTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 145/345 (42%), Gaps = 81/345 (23%)

Query: 182 LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN--AECVFNEMPTRDLV 239
           L  C +L  ++Q+H  +++ G +   ++ + LI    KLG   +  A  V   +  R+  
Sbjct: 56  LDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPF 115

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
           +W ++I G+A     DEA+ +Y  M++        T +++L+AC  +  L LG Q H   
Sbjct: 116 LWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQT 175

Query: 300 LKYDHD--LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS------------------ 339
            +      + + N ++DMY KC S++ A  VF  M ++DVIS                  
Sbjct: 176 FRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAA 235

Query: 340 -------------WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC---- 382
                        W+ M++G AQN   QEAL+ F+ M+ S I+ + +T+ G + AC    
Sbjct: 236 ELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLG 295

Query: 383 ---------------------------------SHAGFVEDGWNHFKSMKKFYGIDPGRE 409
                                            S  G VE+  N F SM      +    
Sbjct: 296 ASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMN-----NKNVF 350

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEM----PYEPDAVTWRALLGAC 450
            YS MI  L   G+ QEA+ L H M      +P+ VT+   L AC
Sbjct: 351 TYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMAC 395


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/593 (38%), Positives = 343/593 (57%), Gaps = 10/593 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            ++    M+   V  D +T   +I  C A       + VH +V+  GF  E  + N L+ 
Sbjct: 280 GLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQ 339

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           MH      +EA+++F +M  +++VSWT MIS Y    + +KA+E    M  EGV P+  T
Sbjct: 340 MHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEIT 399

Query: 178 YSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            ++VL AC  L +L +   LH    + G  S V V ++LID+Y+K   +  A  VF+ +P
Sbjct: 400 IASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP 459

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            ++++ W SII G   N    EAL  +++M  +    +  TL SVL AC  +  L  G +
Sbjct: 460 NKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKE 518

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H H L+     D  L NALLDMY +CG +E A + F+   +KDV SW+ +++G AQ G 
Sbjct: 519 IHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNS-CEKDVASWNILLTGYAQQGK 577

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
              A++LF  M  S + P+ IT   +L ACS +G V DG  +F+SM+  + I P  +HY+
Sbjct: 578 GGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYA 637

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
            ++DLLGRAG+L++A + I +MP +PD   W ALL AC++++N +L   AA+ I  +D +
Sbjct: 638 SVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTK 697

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
             G YILL N+YA+S KWDEVA VRK MR   +T +PGCSW+EV  Q+HAF   D  HPQ
Sbjct: 698 SVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQ 757

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
           I +IN  L+   +K+   G +   +    D++  + E     HSE+LAI FGL++   G 
Sbjct: 758 IKEINAVLEGFYEKMEATGLSMSKDSRRDDIDASKAEIFCG-HSERLAIAFGLINTVPGT 816

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD--YW 643
            I + KNL +C +CH   K  +K+  + I +RD  ++HHF+DG CSCGD  YW
Sbjct: 817 PIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGDEGYW 869



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 153/469 (32%), Positives = 255/469 (54%), Gaps = 22/469 (4%)

Query: 17  QARQFSLTITPPVASCN--TIT-RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD 73
           Q RQ SL     ++  N  +IT +N +SL+      C + DL +A+  + +MQ   V  +
Sbjct: 37  QTRQISLRKHHEISVLNPSSITAQNPNSLI---LELCLKGDLEKALIHLDSMQELQVSVE 93

Query: 74  SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFD 133
             TY  L++ C  + A  E   VH++V          L N LL+M V+F  L EA  +F 
Sbjct: 94  EETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFG 153

Query: 134 QMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL-- 191
           +M ER++ SW  ++  Y  A   D+AL L   ML  G+RP+++T+  VLR C  L  L  
Sbjct: 154 KMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLAR 213

Query: 192 -RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
            R++H  +I+ GFESDV V +ALI +Y K G++ +A  VF+ MP RD + WN++I G+ +
Sbjct: 214 GREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFE 273

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
           N    E L L+  M+      D  T+TSV+ AC  L    LG +VH +V+K  +  ++ +
Sbjct: 274 NDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSV 333

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
           NN+L+ M+   G  ++A  VFS+M  KD++SW+ MISG  +NG  ++A++ +  M+   +
Sbjct: 334 NNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGV 393

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY----SCMIDLLGRAGKL 424
            P+ ITI  VL AC+  G ++ G      M   +    G   Y    + +ID+  +   +
Sbjct: 394 VPDEITIASVLSACAGLGLLDKG-----IMLHEFADRTGLTSYVIVANSLIDMYSKCRCI 448

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKV-HRNTDLAICAAKKILNLDPQ 472
            +A+++ H +P   + ++W +++   ++ +R+ +      + IL+L P 
Sbjct: 449 DKALEVFHRIP-NKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPN 496


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/625 (36%), Positives = 361/625 (57%), Gaps = 42/625 (6%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105
           F       D   A+K    M   G+  +  T+  L+K C      +E + +H HVL  GF
Sbjct: 47  FRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGF 106

Query: 106 EPETFLVNILLNMHVKFSLLEEAQV-------------------------------LFDQ 134
           + + ++   L++M+ +   LE+AQ                                +FD+
Sbjct: 107 DLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDE 166

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIIL 191
           +P ++VVSW  MIS Y +     KALEL   M++  V+P+  T + V+ AC    S+ + 
Sbjct: 167 IPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELG 226

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           RQ+H  I   GF S++ + +ALID+Y+K GE+  A  +   +  +D++ WN++IGG+   
Sbjct: 227 RQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHM 286

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNA 311
           +   EAL L++ M R+G   +  T+ S+L AC  L  +++G  +HV++ K    +++ NA
Sbjct: 287 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNA 346

Query: 312 ------LLDMYCKCGSLEDAMSVF-SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
                 L+DMY KCG ++ A  V  S    + + +W+ MI G A +G +  A  +F  M+
Sbjct: 347 SSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMR 406

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
            + I+P+ IT VG+L ACSH+G ++ G N F+SM++ Y I P  EHY CMIDLLG +G  
Sbjct: 407 KNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLF 466

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484
           +EA ++I+ MP EPD V W +LL ACK+H N +L    AKK++ ++P++PG+Y+LLSNIY
Sbjct: 467 KEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIY 526

Query: 485 ANSQKWDEVAEVRKTMRARGITKE-PGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           A + KW+EV ++R  +  +G+ K+ PGCS IE++  +H F + D  HPQ  +I   L+ +
Sbjct: 527 ATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEM 586

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
              L   G+ PDT+ VLQ++E E KE ++++HSEKLAI FGL+S   G  + I KNLR+C
Sbjct: 587 EVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVC 646

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIR 628
            +CH   KL +K+  + I+ RD  R
Sbjct: 647 RNCHEATKLISKIYKREIIARDRTR 671



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 121/421 (28%), Positives = 212/421 (50%), Gaps = 42/421 (9%)

Query: 122 FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
           F  L  A  +F+ +PE N + W  M   +  +     AL+L + M+  G+ PN FT+  +
Sbjct: 22  FDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFL 81

Query: 182 LRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV--------- 229
           L++C      +   Q+H  ++K+GF+ D++V ++LI +YA+ G L +A+ V         
Sbjct: 82  LKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDV 141

Query: 230 ----------------------FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
                                 F+E+P +D+V WN++I G+A+  +  +AL L+K M + 
Sbjct: 142 VSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKT 201

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDA 325
               D+ST+ +V+ AC     +ELG QVH  ++   +  +L + NAL+D+Y KCG +E A
Sbjct: 202 NVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETA 261

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +   +  KDVISW+T+I G       +EAL LF+ M  S   PN +T++ +L AC+H 
Sbjct: 262 CELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 321

Query: 386 GFVEDG-WNHFKSMKKFYG--IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
           G ++ G W H    KK  G  +       + +ID+  + G +  A ++     +     T
Sbjct: 322 GAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLST 381

Query: 443 WRALLGACKVHRNTDLA--ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTM 500
           W A++    +H   + A  I +  +   ++P D  T++ L +  ++S   D    + ++M
Sbjct: 382 WNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDI-TFVGLLSACSHSGMLDLGRNIFRSM 440

Query: 501 R 501
           R
Sbjct: 441 R 441



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 99/214 (46%), Gaps = 18/214 (8%)

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
           L  A+SVF  + + + + W+ M  G A +     ALKL+  M    + PN+ T   +L +
Sbjct: 25  LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKS 84

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
           C+ +   ++G      + K  G D     ++ +I +  + G+L++A K+     +  D V
Sbjct: 85  CAKSKTFKEGQQIHGHVLKL-GFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHR-DVV 142

Query: 442 TWRALLGACKVHRNTDLAICAAKKILNLDP-QDPGTYILLSNIYANSQKWDEVAEVRKTM 500
           ++ AL+        +   I +A+K+ +  P +D  ++  + + YA +  + +  E+ K M
Sbjct: 143 SYTALITGYA----SRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEM 198

Query: 501 RARGITKE--------PGCSW---IEVNKQIHAF 523
               +  +          C+    IE+ +Q+H++
Sbjct: 199 MKTNVKPDESTMATVVSACAQSGSIELGRQVHSW 232


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/520 (40%), Positives = 315/520 (60%), Gaps = 7/520 (1%)

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DS 187
           +F Q+ + +   +  MI AY  +   ++   L   M R GV PN  + S V+++C    S
Sbjct: 124 VFSQIMKPSGSQYNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISS 183

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L+   Q+H  I++ G +SD  + + L+D+Y+   +   A  VF+E+P  D V WN +I  
Sbjct: 184 LMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISC 243

Query: 248 FAQNSDVDEALNLYKRMKRA--GFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD 305
              N    +AL ++  M+    GF  D  T   +L+AC  L  LE G +VH ++ ++ +D
Sbjct: 244 CIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYD 303

Query: 306 LILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
             LN  N+L+ MY +CG LE A S+F RM +++V+SWS MISG A +GY +EA++ FE M
Sbjct: 304 GALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQM 363

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
           +   + P+  T+ GVL ACSH G V+DG   F  M K +GI+P   HY CM+DLLGRAG 
Sbjct: 364 QQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGL 423

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L +A +LI  M  +PD+  WR LLGAC++HR+  L       ++ L  Q+ G Y+LL NI
Sbjct: 424 LDQAYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIGHLIELKAQEAGDYVLLLNI 483

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           Y++   WD+V ++RK M+ +GI   PGCS IE+  ++H F V D  HP+ D+I + L  +
Sbjct: 484 YSSVGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRTDEIYEMLDEI 543

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
            ++L   GY  + +  L +L  E+K + + YHSEKLAI FG+++   G TIR+ KNLRIC
Sbjct: 544 GKQLKIAGYVAELSSELHNLGAEEKGNRLSYHSEKLAIAFGVLATPPGTTIRVAKNLRIC 603

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            DCH FAK+ +   N+ +VIRD  R+HHF++G CSC  YW
Sbjct: 604 VDCHNFAKVLSGAYNREVVIRDRTRFHHFREGQCSCNGYW 643



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 158/345 (45%), Gaps = 43/345 (12%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  GV  + ++ + ++K C+   ++     +H  +L  G + +  L+  L++++     
Sbjct: 159 MRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDK 218

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM--LREGVRPNMFTYSAVL 182
            EEA  +FD++P+ + VSW  +IS     +    AL +   M    +G  P+  T   +L
Sbjct: 219 FEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLL 278

Query: 183 RACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
           +AC +L  L    ++H  I + G++  + + ++LI +Y++ G L  A  +F  M  R++V
Sbjct: 279 QACANLGALEFGERVHNYIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVV 338

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
            W+++I GFA +    EA+  +++M++ G + D  TLT VL AC+               
Sbjct: 339 SWSAMISGFAMHGYGREAIEAFEQMQQLGVSPDDQTLTGVLSACS--------------- 383

Query: 300 LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-----IQKDVISWSTMISGLAQNGYSQ 354
                              CG ++D +  F RM     I+ ++  +  M+  L + G   
Sbjct: 384 ------------------HCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLLD 425

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           +A +L  SM +      + T++G      HA   E    H   +K
Sbjct: 426 QAYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIGHLIELK 470



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 22/208 (10%)

Query: 53  RDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
           RD  R    M +    G   D VT   L++ C    A+E  + VHN++   G++    L 
Sbjct: 251 RDALRMFDIMQST-ADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDGALNLC 309

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N L+ M+ +   LE+A  +F +M ERNVVSW+ MIS +       +A+E    M + GV 
Sbjct: 310 NSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVS 369

Query: 173 PNMFTYSAVLRACDSLIILRQLHCGIIK------------VGFESDVFVRSALIDIYAKL 220
           P+  T + VL AC         HCG++              G E ++     ++D+  + 
Sbjct: 370 PDDQTLTGVLSACS--------HCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRA 421

Query: 221 GELRNAECVFNEMPTR-DLVVWNSIIGG 247
           G L  A  +   M  + D  +W +++G 
Sbjct: 422 GLLDQAYQLIMSMVIKPDSTLWRTLLGA 449


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/593 (37%), Positives = 350/593 (59%), Gaps = 7/593 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A++    +Q   ++ D V+   ++        +   K +H + +    +    + N L+
Sbjct: 196 EALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLI 255

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   +  A ++FD+M  ++++SWTT+I+AY     + +AL+LL  +  +G+  +  
Sbjct: 256 DMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTM 315

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
              + L AC  L  L   +++H   +K G  SD+ +++ +ID+YA  G +  A  +F  +
Sbjct: 316 MIGSTLLACSGLRCLSHAKEVHGYTLKRGL-SDLMMQNMIIDVYADCGNINYATRMFESI 374

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +D+V W S+I  +  N   +EAL ++  MK      D  TL S+L A   L+ L  G 
Sbjct: 375 KCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGK 434

Query: 294 QVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           ++H  + +    L  +  N+L+DMY  CGSLE+A  VF     K ++ W+TMI+    +G
Sbjct: 435 EIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHG 494

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
             + A++LF  M+  ++ P++IT + +L+ACSH+G + +G    ++MK  Y ++P  EHY
Sbjct: 495 RGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHY 554

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +C++DLLGRA  L+EA   +  M  EP A  W A LGAC++H N  L   AA+K+L+LDP
Sbjct: 555 ACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDP 614

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
             PG+Y+L+SN++A S +W +V EVR  M+  G+ K PGCSWIEV  ++H F V D SHP
Sbjct: 615 DSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHP 674

Query: 532 QIDKINKHLKHLIQKLVGV-GYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           +  KI + L  + +KL    GY P T  VL ++  E+K   +  HSE+LAI +GLMS ++
Sbjct: 675 ESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHSERLAIAYGLMSTSE 734

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           G  IRI KNLR+C DCHTF KL +K   + +++RD  R+HHF+DG CSCGD+W
Sbjct: 735 GTPIRITKNLRVCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGVCSCGDFW 787



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/421 (31%), Positives = 216/421 (51%), Gaps = 23/421 (5%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  GV  DS T+  ++K C     +     +H  ++  G++   F+ N L++M+ K + 
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 125 LEEAQVLFDQMPERN-VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
           +  A+ LFD+M ERN VVSW ++ISAY       +AL L   M + GV  N +T  A L+
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 184 ACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           AC+     +   ++H  I+K     DV+V +AL+ ++ + G++  A  +F+E+  +D + 
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT 180

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           WNS+I GF QN   +EAL  +  ++ A    D+ +L S+L A   L  L  G ++H + +
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAM 240

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K   D +L + N L+DMY KC  +  A  VF +MI KD+ISW+T+I+  AQN    EALK
Sbjct: 241 KNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALK 300

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM---- 414
           L   ++   +  + + I   L ACS       G       K+ +G    R     M    
Sbjct: 301 LLRKVQTKGMDVDTMMIGSTLLACS-------GLRCLSHAKEVHGYTLKRGLSDLMMQNM 353

Query: 415 -IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR---NTDLAICAAKKILNLD 470
            ID+    G +  A ++   +  + D V+W +++ +C VH    N  L +    K  +++
Sbjct: 354 IIDVYADCGNINYATRMFESIKCK-DVVSWTSMI-SCYVHNGLANEALGVFYLMKETSVE 411

Query: 471 P 471
           P
Sbjct: 412 P 412


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/553 (37%), Positives = 334/553 (60%), Gaps = 6/553 (1%)

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H H++  G      L+  LL +      +   + LF  + + +   + ++I A      +
Sbjct: 30  HAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSKFGFS 89

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSAL 213
             A+     ML   + P+ +T+++V++AC  L +L     +H  +   G+ SD FV++AL
Sbjct: 90  LDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASDSFVQAAL 149

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           I  YAK    R A  VF+EMP R +V WNS+I G+ QN   +EA+ ++ +M+ +    D 
Sbjct: 150 IAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDS 209

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
           +T  SVL AC+ L  L+ G  +H  ++      +++L  +L++M+ +CG +  A +VF  
Sbjct: 210 ATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYS 269

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           MI+ +V+ W+ MISG   +GY  EA+++F  MK   + PN +T V VL AC+HAG +++G
Sbjct: 270 MIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEG 329

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY-EPDAVTWRALLGAC 450
            + F SMK+ YG+ PG EH+ CM+D+ GR G L EA + +  +   E     W A+LGAC
Sbjct: 330 RSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVPAVWTAMLGAC 389

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
           K+H+N DL +  A+ ++N +P++PG Y+LLSN+YA + + D V  VR  M  RG+ K+ G
Sbjct: 390 KMHKNFDLGVEVAENLINAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVG 449

Query: 511 CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKED 570
            S I+V+ + + F++ D SHP+ ++I   L  LI +    GYAP     + +LEGE++E 
Sbjct: 450 YSTIDVDNRSYLFSMGDKSHPETNEIYCFLDELIWRCKDAGYAPVPESAMHELEGEEREY 509

Query: 571 SIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYH 630
           +++YHSEKLA+ FGLM    G T+RI KNLRIC DCH+  K  + + N+ I++RD +R+H
Sbjct: 510 ALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRICEDCHSAIKFISAVMNREIIVRDKLRFH 569

Query: 631 HFQDGNCSCGDYW 643
           HF++G+CSC DYW
Sbjct: 570 HFREGSCSCSDYW 582



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 139/279 (49%), Gaps = 6/279 (2%)

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           Y AV+ A   L  L+Q H  ++  G      + + L+ +    G +     +F  +   D
Sbjct: 13  YEAVVSAGPHLRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPD 72

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
             ++NS+I   ++     +A+  Y+RM  +       T TSV++AC  L+LL +GT VH 
Sbjct: 73  SFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHS 132

Query: 298 HVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           HV    Y  D  +  AL+  Y K  +   A  VF  M Q+ +++W++MISG  QNG + E
Sbjct: 133 HVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANE 192

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCM 414
           A+++F  M+ SR++P+  T V VL ACS  G ++ G W H   +    GI       + +
Sbjct: 193 AVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGS--GITMNVVLATSL 250

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           +++  R G +  A  + + M  E + V W A++    +H
Sbjct: 251 VNMFSRCGDVGRARAVFYSM-IEGNVVLWTAMISGYGMH 288



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 144/278 (51%), Gaps = 10/278 (3%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           T+  +IK C     +    LVH+HV   G+  ++F+   L+  + K      A+ +FD+M
Sbjct: 110 TFTSVIKACADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEM 169

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR--- 192
           P+R++V+W +MIS Y    + ++A+E+   M    V P+  T+ +VL AC  L  L    
Sbjct: 170 PQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGC 229

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            LH  I+  G   +V + ++L++++++ G++  A  VF  M   ++V+W ++I G+  + 
Sbjct: 230 WLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHG 289

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLIL---- 308
              EA+ ++ RMK  G   +  T  +VL AC    L++ G  V    +K ++ ++     
Sbjct: 290 YGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFAS-MKQEYGVVPGVEH 348

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVIS--WSTMI 344
           +  ++DM+ + G L +A      +   +++   W+ M+
Sbjct: 349 HVCMVDMFGRGGLLNEAYQFVKGLNSDELVPAVWTAML 386


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/619 (36%), Positives = 346/619 (55%), Gaps = 54/619 (8%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  GVR DS TY   +  C    ++   K +H  V+      + ++ + L+ ++ K   
Sbjct: 261 MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGC 320

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            +EA+ +F+ + +RN V+WT +IS +       +++EL   M  E +  + F  + ++  
Sbjct: 321 FKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISG 380

Query: 185 CDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV-- 239
           C S   L + RQLH   +K G    V V ++LI +YAK   L++AE +F  M  +D+V  
Sbjct: 381 CCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSW 440

Query: 240 -----------------------------VWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
                                         WN+++G + Q+   ++ L +YK M    + 
Sbjct: 441 TSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYV 500

Query: 271 -ADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMS 327
             D  T  ++ + C  L   +LG Q+    +K     D  + NA++ MY KCG + +A  
Sbjct: 501 RPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARK 560

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           VF  +  KD++SW+ MI+G +Q+G  ++A+++F+ +     KP+YI+ V VL  CSH+G 
Sbjct: 561 VFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGL 620

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           V++G  +F  MK+ + I PG EH+SCM+DLLGRAG L EA  LI +MP +P A  W ALL
Sbjct: 621 VQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALL 680

Query: 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507
            ACK+H N +LA  AAK +  LD  D G+Y+L++ IYA++ K D+ A++RK MR +GI K
Sbjct: 681 SACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKK 740

Query: 508 EPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQ 567
            PG SW+EV+ ++H F   D SHPQ+  I K L  L++K+  +GY               
Sbjct: 741 NPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYV-------------- 786

Query: 568 KEDSIQ---YHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIR 624
           + DS +   +HSEKLA+ FGLM+L     I I KNLRICGDCHT  KL + +  +  VIR
Sbjct: 787 RTDSTRSEIHHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIR 846

Query: 625 DPIRYHHFQDGNCSCGDYW 643
           D +R+HHF  G+CSCGDYW
Sbjct: 847 DAVRFHHFNGGSCSCGDYW 865



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 117/485 (24%), Positives = 214/485 (44%), Gaps = 82/485 (16%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFE------------PETFLVNILLNMHVKFSL 124
           +  L+   LA     +  L+H ++  G               P     N++LN + K   
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 86

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR-PNMFTYSAVLR 183
           L +A  LF +MP R+V SW T++S Y  ++    +LE  + M R G   PN FT +  ++
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 146

Query: 184 ACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL----------------- 223
           +C +L    +  QL   + K   + D  V +AL+D++ + G +                 
Sbjct: 147 SCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFC 206

Query: 224 RNAEC--------------VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
           RN+                +F+ MP RD+V WN ++   +Q+  V EAL++   M+  G 
Sbjct: 207 RNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDH-DLILNNALLDMYCKCGSLEDAMS 327
             D +T TS L AC  L+ L  G Q+H  V++   H D  + +AL+++Y K G  ++A  
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKG 326

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS---- 383
           VF+ +  ++ ++W+ +ISG  Q G   E+++LF  M+   +  +   +  ++  C     
Sbjct: 327 VFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386

Query: 384 -------HAGFVEDGW-----------------NHFKSMKKFYGIDPGRE--HYSCMIDL 417
                  H+  ++ G                  ++ +S +  +     ++   ++ MI  
Sbjct: 387 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITA 446

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG-- 475
             + G + +A +    M  E + +TW A+LGA   H   +  +   K +L+ +   P   
Sbjct: 447 YSQVGNVAKAREFFDGMS-EKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWV 505

Query: 476 TYILL 480
           TY+ L
Sbjct: 506 TYVTL 510


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/592 (35%), Positives = 346/592 (58%), Gaps = 6/592 (1%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++    M   G   DS T   ++  C+  H      +VH + +  G   ET L N LL
Sbjct: 68  KAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALL 127

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+   S       +F  M ++NVVSWT MI++Y  A   DK   L   M  EG+RP++F
Sbjct: 128 DMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVF 187

Query: 177 TYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
             ++ L A    +SL   + +H   I+ G E  + V +AL+++Y K G +  A  +F+ +
Sbjct: 188 AITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHV 247

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +D + WN++IGG+++++  +EA  L+  M       +  T+  +L A   L+ LE G 
Sbjct: 248 TKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLERGR 306

Query: 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           ++H + ++  Y  D  + NAL+DMY KCG+L  A  +F  +  K++ISW+ MI+G   +G
Sbjct: 307 EMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHG 366

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
             ++A+ LFE MK S I+P+  +   +L+ACSH+G  ++GW  F +M+  + I+P  +HY
Sbjct: 367 RGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHY 426

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +CM+DLL   G L+EA + I  MP EPD+  W +LL  C++HRN  LA   A+ +  L+P
Sbjct: 427 ACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEP 486

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
           ++ G Y+LL+NIYA +++W+ V +++  +  RG+ +  GCSWIEV  + H F   + +HP
Sbjct: 487 ENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFAENRNHP 546

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
           Q  +I + L  + +++   G+ P   Y L   +    ++++  HS KLA+ FG+++L+QG
Sbjct: 547 QGMRIAEFLDDVARRMQEEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLSQG 606

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + IR+ KN R+C  CH  AK  +KM  + I++RD  R+HHF++G CSC  YW
Sbjct: 607 RPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDSNRFHHFEEGRCSCRGYW 658



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/270 (33%), Positives = 139/270 (51%), Gaps = 16/270 (5%)

Query: 186 DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
           D L++    H  ++K GF +   V +ALI  YAK   + +A  VF+EMP RD++ WNSII
Sbjct: 2   DGLVV----HGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSII 57

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD-- 303
           GG A N   D+A+ L+ RM   G   D +TL SV+ AC       +G  VH + ++    
Sbjct: 58  GGCASNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLI 117

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            +  L NALLDMY  C        +F  M QK+V+SW+ MI+   + G+  +   LF+ M
Sbjct: 118 SETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEM 177

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY----SCMIDLLG 419
            +  I+P+   I   L A   AG   +   H KS+   Y I  G E      + ++++  
Sbjct: 178 GLEGIRPDVFAITSALDA--FAG--NESLKHGKSVHG-YAIRNGIEEVLPVANALMEMYV 232

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           + G ++EA + I +   + D ++W  L+G 
Sbjct: 233 KCGYMEEA-RFIFDHVTKKDTISWNTLIGG 261


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/440 (45%), Positives = 291/440 (66%), Gaps = 2/440 (0%)

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           ++ V +A+I  Y+++G + +A  +F++M  +DLV W+++I G+A++    EALNL+  M+
Sbjct: 13  NLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQ 72

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLE 323
             G   DQ T+ SV+ AC  L +L+    +H++V K      L +NNAL+DMY KCG+L 
Sbjct: 73  VFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLG 132

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
            A  VF +M  ++VISW++MI+  A +G +  ALK F  MK   IKPN +T VGVL+ACS
Sbjct: 133 AARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACS 192

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
           HAG VE+G   F SM   + I P  EHY CM+DL GRA  L++A++L+  MP  P+ V W
Sbjct: 193 HAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIW 252

Query: 444 RALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503
            +L+ AC++H   +L   AAK++L L+P   G  + LSNIYA  ++W +V E+R  M+ R
Sbjct: 253 GSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVGELRNLMKQR 312

Query: 504 GITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDL 563
           GI+KE GCS IE+N Q++ F +AD  H Q DKI + L  ++++L  VGY P+T  VL D+
Sbjct: 313 GISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGYTPNTRSVLVDV 372

Query: 564 EGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVI 623
           E E K++ + +HSEKLA+ +GLM   +G  IRI KNLR+C DCHTF KL +K+    I++
Sbjct: 373 EEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKLVSKVYGMEIIV 432

Query: 624 RDPIRYHHFQDGNCSCGDYW 643
           RD  R+HH++ G CSC DYW
Sbjct: 433 RDRTRFHHYKAGVCSCNDYW 452



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 145/273 (53%), Gaps = 17/273 (6%)

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           ++  +++ + +   +E+A+++FDQM E+++V W+ MIS Y ++    +AL L   M   G
Sbjct: 16  VLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFG 75

Query: 171 VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
           ++P+  T  +V+ AC  L +L   + +H  + K G    + V +ALID+YAK G L  A 
Sbjct: 76  IKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAAR 135

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            VF +M +R+++ W S+I  FA + D   AL  + +MK      +  T   VL AC+   
Sbjct: 136 GVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAG 195

Query: 288 LLELG-------TQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVIS 339
           L+E G       T  H    K++H       ++D++ +   L DA+ +   M +  +V+ 
Sbjct: 196 LVEEGRRTFASMTNEHNITPKHEH----YGCMVDLFGRANLLRDALELVETMPLAPNVVI 251

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           W ++++    +G ++  L  F + +V  ++P++
Sbjct: 252 WGSLMAACQIHGENE--LGEFAAKQVLELEPDH 282



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 99/200 (49%), Gaps = 6/200 (3%)

Query: 52  QRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           + D P+ A+     MQ  G++ D VT   +I  C     ++ AK +H +V   G      
Sbjct: 57  ESDKPQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALP 116

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           + N L++M+ K   L  A+ +F++M  RNV+SWT+MI+A+        AL+    M  E 
Sbjct: 117 VNNALIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDEN 176

Query: 171 VRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVR----SALIDIYAKLGELRNA 226
           ++PN  T+  VL AC    ++ +       +  E ++  +      ++D++ +   LR+A
Sbjct: 177 IKPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDA 236

Query: 227 ECVFNEMP-TRDLVVWNSII 245
             +   MP   ++V+W S++
Sbjct: 237 LELVETMPLAPNVVIWGSLM 256


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/619 (36%), Positives = 346/619 (55%), Gaps = 54/619 (8%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  GVR DS TY   +  C    ++   K +H  V+      + ++ + L+ ++ K   
Sbjct: 281 MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGC 340

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
            +EA+ +F+ + +RN V+WT +IS +       +++EL   M  E +  + F  + ++  
Sbjct: 341 FKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISG 400

Query: 185 CDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV-- 239
           C S   L + RQLH   +K G    V V ++LI +YAK   L++AE +F  M  +D+V  
Sbjct: 401 CCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSW 460

Query: 240 -----------------------------VWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
                                         WN+++G + Q+   ++ L +YK M    + 
Sbjct: 461 TSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYV 520

Query: 271 -ADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMS 327
             D  T  ++ + C  L   +LG Q+    +K     D  + NA++ MY KCG + +A  
Sbjct: 521 RPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARK 580

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           VF  +  KD++SW+ MI+G +Q+G  ++A+++F+ +     KP+YI+ V VL  CSH+G 
Sbjct: 581 VFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGL 640

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           V++G  +F  MK+ + I PG EH+SCM+DLLGRAG L EA  LI +MP +P A  W ALL
Sbjct: 641 VQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALL 700

Query: 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507
            ACK+H N +LA  AAK +  LD  D G+Y+L++ IYA++ K D+ A++RK MR +GI K
Sbjct: 701 SACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKK 760

Query: 508 EPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQ 567
            PG SW+EV+ ++H F   D SHPQ+  I K L  L++K+  +GY               
Sbjct: 761 NPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYV-------------- 806

Query: 568 KEDSIQ---YHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIR 624
           + DS +   +HSEKLA+ FGLM+L     I I KNLRICGDCHT  KL + +  +  VIR
Sbjct: 807 RTDSTRSEIHHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIR 866

Query: 625 DPIRYHHFQDGNCSCGDYW 643
           D +R+HHF  G+CSCGDYW
Sbjct: 867 DAVRFHHFNGGSCSCGDYW 885



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 117/485 (24%), Positives = 214/485 (44%), Gaps = 82/485 (16%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFE------------PETFLVNILLNMHVKFSL 124
           +  L+   LA     +  L+H ++  G               P     N++LN + K   
Sbjct: 47  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 106

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR-PNMFTYSAVLR 183
           L +A  LF +MP R+V SW T++S Y  ++    +LE  + M R G   PN FT +  ++
Sbjct: 107 LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 166

Query: 184 ACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL----------------- 223
           +C +L    +  QL   + K   + D  V +AL+D++ + G +                 
Sbjct: 167 SCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFC 226

Query: 224 RNAEC--------------VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
           RN+                +F+ MP RD+V WN ++   +Q+  V EAL++   M+  G 
Sbjct: 227 RNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 286

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDH-DLILNNALLDMYCKCGSLEDAMS 327
             D +T TS L AC  L+ L  G Q+H  V++   H D  + +AL+++Y K G  ++A  
Sbjct: 287 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKG 346

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS---- 383
           VF+ +  ++ ++W+ +ISG  Q G   E+++LF  M+   +  +   +  ++  C     
Sbjct: 347 VFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 406

Query: 384 -------HAGFVEDGW-----------------NHFKSMKKFYGIDPGRE--HYSCMIDL 417
                  H+  ++ G                  ++ +S +  +     ++   ++ MI  
Sbjct: 407 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITA 466

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG-- 475
             + G + +A +    M  E + +TW A+LGA   H   +  +   K +L+ +   P   
Sbjct: 467 YSQVGNVAKAREFFDGMS-EKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWV 525

Query: 476 TYILL 480
           TY+ L
Sbjct: 526 TYVTL 530


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/562 (39%), Positives = 324/562 (57%), Gaps = 8/562 (1%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
           +EE + +H+ +   GF   T   N L++M+ K   L+EA+ +F+ + ER VVSW+ MI A
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 150 YCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGF-- 203
           Y       +AL L   M  +G V PN  T++ V  AC  +  L   R++H   +  G   
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELK 120

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
            S+  + +AL+++Y + G L  A  VF+ M   D   W S+I    +N ++ EAL L+ R
Sbjct: 121 SSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHR 180

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGS 321
           M   G      TL SVL AC     L++G Q+H  +    +   ++   ALLDMY KCGS
Sbjct: 181 MNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGS 240

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
           LE +  VF+ M  ++ +SW+ MI+ LAQ+G   EAL+LF+ M +  +  +  T + VL A
Sbjct: 241 LECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRA 300

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
           CSHAG +++    F SM + Y I P   HY   +D +GRAG+LQ+A +LIH MP+ P+ +
Sbjct: 301 CSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETL 360

Query: 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
           TW+ LL AC++H   + A   A+ +  L P+D   Y LL N+YA + ++ +   VRK M 
Sbjct: 361 TWKTLLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMT 420

Query: 502 ARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQ 561
            RG+ K PG S+IEV  ++H F   D +HP  D+I   L+ L  ++   GY P+T  VL 
Sbjct: 421 DRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLH 480

Query: 562 DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTI 621
            +  E+KE  I  HSEKLAI FGL++   G  + I KNLR+C DCH   K+ AK+  + I
Sbjct: 481 AVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRI 540

Query: 622 VIRDPIRYHHFQDGNCSCGDYW 643
           V+RD  R+HHF+DG CSC DYW
Sbjct: 541 VVRDTHRFHHFEDGQCSCKDYW 562



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 30/243 (12%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           +S++   T  C   +L  A++  H M   G+   SVT A ++  C    A++  K +H+ 
Sbjct: 159 TSMITACTENC---ELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSR 215

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           + + GF         LL+M+ K   LE +  +F  M  RN VSWT MI+A       D+A
Sbjct: 216 LDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEA 275

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSAL------ 213
           LEL   M  EG+  +  T+  VLRAC         H G+IK   E   F  S +      
Sbjct: 276 LELFKEMNLEGMVADATTFICVLRACS--------HAGLIKESLE---FFHSMVEDYAIA 324

Query: 214 ---------IDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKR 263
                    +D   + G L++AE + + MP   + + W +++     +S  + A  + + 
Sbjct: 325 PTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAEL 384

Query: 264 MKR 266
           + +
Sbjct: 385 LSK 387


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/601 (39%), Positives = 332/601 (55%), Gaps = 41/601 (6%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPET--FLVNILLNMHVKFSLLEEAQVLFDQMPE 137
           L  C  AR A E    +H  VL  G    T   +   L   +     L+ +  L  +  +
Sbjct: 296 LTSCSTARRAAE----LHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRD 351

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCG 197
              + +T+ I A+        AL LL  ML +G+ P   T SA L AC  L   R LH  
Sbjct: 352 PTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACRGLSPGRALHGY 411

Query: 198 IIKVGFESDVFVRSALIDIYAK--------------------------------LGELRN 225
             K+    D +V +AL+ +YA+                                +G L +
Sbjct: 412 AFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDD 471

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F+ +PT+D V WN++I G+ Q+   +EAL L++RM  +G   D+ T+  VL A   
Sbjct: 472 ARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQ 531

Query: 286 LALLELGTQVHVHV---LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
           L  +E G  +H +V    +    + +  AL+DMYCKCGSL DA+ VF  +  KD++ W+ 
Sbjct: 532 LGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNA 591

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           MI+G A +G S++AL++F   +   + P  IT +G+L ACSH+G VE+G   F+SM++ Y
Sbjct: 592 MINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREY 651

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           GIDP  EHY CM+DLLGRAG ++EA  L+  M   PDAV W +LL AC++H+N  L    
Sbjct: 652 GIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQI 711

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A  ++     + G YILLSNIYA    W EVA VR  M+A GI KEPGCS IE++++++ 
Sbjct: 712 ADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYE 771

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F   D SHP+ D+I   L  +   +   G+ P T  VL DL+   KE ++  HSEKLA+ 
Sbjct: 772 FVAGDMSHPRTDEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLALA 831

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           FGL+S   G TI+I KNLR C DCH   KL +++  + IV RD  R+HHF DG+CSCGDY
Sbjct: 832 FGLISTQPGATIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDY 891

Query: 643 W 643
           W
Sbjct: 892 W 892


>gi|15240665|ref|NP_199850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171167|sp|Q9FK33.1|PP427_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g50390, chloroplastic; Flags: Precursor
 gi|9758921|dbj|BAB09458.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008555|gb|AED95938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/577 (35%), Positives = 351/577 (60%), Gaps = 9/577 (1%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           TY  L++ C+   ++   K V+  ++S GFEPE +++N +L MHVK  ++ +A+ LFD++
Sbjct: 125 TYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHVKCGMIIDARRLFDEI 184

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILR 192
           PERN+ S+ ++IS + +     +A EL   M  E       T++ +LRA     S+ + +
Sbjct: 185 PERNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETHTFAVMLRASAGLGSIYVGK 244

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           QLH   +K+G   + FV   LID+Y+K G++ +A C F  MP +  V WN++I G+A + 
Sbjct: 245 QLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGYALHG 304

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNN 310
             +EAL L   M+ +G + DQ TL+ ++R  T LA LEL  Q H  +++  ++ +++ N 
Sbjct: 305 YSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTKQAHASLIRNGFESEIVANT 364

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           AL+D Y K G ++ A  VF ++ +K++ISW+ ++ G A +G   +A+KLFE M  + + P
Sbjct: 365 ALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANVAP 424

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           N++T + VL AC+++G  E GW  F SM + +GI P   HY+CMI+LLGR G L EA+  
Sbjct: 425 NHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAIAF 484

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
           I   P +     W ALL AC++  N +L    A+K+  + P+  G Y+++ N+Y +  K 
Sbjct: 485 IRRAPLKTTVNMWAALLNACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMYNSMGKT 544

Query: 491 DEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF---NVADSSHPQIDK-INKHLKHLIQK 546
            E A V +T+ ++G++  P C+W+EV  Q H+F   +  DS +  + + I + +  L+++
Sbjct: 545 AEAAGVLETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNETVKRQIYQKVDELMEE 604

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           +   GY+ +  ++L D++ +++E   +YHSEKLAI +GL++  +   ++I +N RIC +C
Sbjct: 605 ISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEWNPLQITQNHRICKNC 664

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           H   +  + +  + +V+RD  R+HHF++G CSCG YW
Sbjct: 665 HKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 125/281 (44%), Gaps = 31/281 (11%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+  ++ M+  GV  D  T + +I+       +E  K  H  ++  GFE E      L++
Sbjct: 309 ALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTKQAHASLIRNGFESEIVANTALVD 368

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            + K+  ++ A+ +FD++P +N++SW  ++  Y +      A++L   M+   V PN  T
Sbjct: 369 FYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANVAPNHVT 428

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           + AVL AC         + G+ + G+E  +F+  ++ +++       +  C+  E+  RD
Sbjct: 429 FLAVLSAC--------AYSGLSEQGWE--IFL--SMSEVHGIKPRAMHYACMI-ELLGRD 475

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
            +              +DEA+     ++RA      +   ++L AC     LELG  V  
Sbjct: 476 GL--------------LDEAIAF---IRRAPLKTTVNMWAALLNACRMQENLELGRVVAE 518

Query: 298 HVLKYDHDLILNNALL-DMYCKCGSLEDAMSVFSRMIQKDV 337
            +     + + N  ++ +MY   G   +A  V   +  K +
Sbjct: 519 KLYGMGPEKLGNYVVMYNMYNSMGKTAEAAGVLETLESKGL 559


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/589 (38%), Positives = 341/589 (57%), Gaps = 8/589 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            ++    M+   V  D +T   +I  C A       + VH +V+  GF  E  + N L+ 
Sbjct: 280 GLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQ 339

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           MH      +EA+++F +M  +++VSWT MIS Y    + +KA+E    M  EGV P+  T
Sbjct: 340 MHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEIT 399

Query: 178 YSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            ++VL AC  L +L +   LH    + G  S V V ++LID+Y+K   +  A  VF+ +P
Sbjct: 400 IASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP 459

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            ++++ W SII G   N    EAL  +++M  +    +  TL SVL AC  +  L  G +
Sbjct: 460 NKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKE 518

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H H L+     D  L NALLDMY +CG +E A + F+   +KDV SW+ +++G AQ G 
Sbjct: 519 IHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNS-CEKDVASWNILLTGYAQQGK 577

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
              A++LF  M  S + P+ IT   +L ACS +G V DG  +F+SM+  + I P  +HY+
Sbjct: 578 GGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYA 637

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
            ++DLLGRAG+L++A + I +MP +PD   W ALL AC++++N +L   AA+ I  +D +
Sbjct: 638 SVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTK 697

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
             G YILL N+YA+S KWDEVA VRK MR   +T +PGCSW+EV  Q+HAF   D  HPQ
Sbjct: 698 SVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQ 757

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
           I +IN  L+   +K+   G +   +    D++  + E     HSE+LAI FGL++   G 
Sbjct: 758 IKEINAVLEGFYEKMEATGLSMSKDSRRDDIDASKAEIFCG-HSERLAIAFGLINTVPGT 816

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641
            I + KNL +C +CH   K  +K+  + I +RD  ++HHF+DG CSCGD
Sbjct: 817 PIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGD 865



 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 153/469 (32%), Positives = 255/469 (54%), Gaps = 22/469 (4%)

Query: 17  QARQFSLTITPPVASCN--TIT-RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD 73
           Q RQ SL     ++  N  +IT +N +SL+      C + DL +A+  + +MQ   V  +
Sbjct: 37  QTRQISLRKHHEISVLNPSSITAQNPNSLI---LELCLKGDLEKALIHLDSMQELQVSVE 93

Query: 74  SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFD 133
             TY  L++ C  + A  E   VH++V          L N LL+M V+F  L EA  +F 
Sbjct: 94  EETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFG 153

Query: 134 QMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL-- 191
           +M ER++ SW  ++  Y  A   D+AL L   ML  G+RP+++T+  VLR C  L  L  
Sbjct: 154 KMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLAR 213

Query: 192 -RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
            R++H  +I+ GFESDV V +ALI +Y K G++ +A  VF+ MP RD + WN++I G+ +
Sbjct: 214 GREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFE 273

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
           N    E L L+  M+      D  T+TSV+ AC  L    LG +VH +V+K  +  ++ +
Sbjct: 274 NDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSV 333

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
           NN+L+ M+   G  ++A  VFS+M  KD++SW+ MISG  +NG  ++A++ +  M+   +
Sbjct: 334 NNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGV 393

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY----SCMIDLLGRAGKL 424
            P+ ITI  VL AC+  G ++ G      M   +    G   Y    + +ID+  +   +
Sbjct: 394 VPDEITIASVLSACAGLGLLDKG-----IMLHEFADRTGLTSYVIVANSLIDMYSKCRCI 448

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKV-HRNTDLAICAAKKILNLDPQ 472
            +A+++ H +P   + ++W +++   ++ +R+ +      + IL+L P 
Sbjct: 449 DKALEVFHRIP-NKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPN 496


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/603 (35%), Positives = 354/603 (58%), Gaps = 42/603 (6%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS--LLEEAQVLFDQMPE 137
           L++CC       + K++H H+L      + F  + L+   +  +  LL  A  +  Q+  
Sbjct: 23  LLECC---SNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQN 79

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQL 194
            N+  +  +I     ++  + +    I  LR G+ P+  T+  +++AC  L    +  Q 
Sbjct: 80  PNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQT 139

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF------------------------ 230
           H   IK GFE D +V+++L+ +YA +G++  A  VF                        
Sbjct: 140 HGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDA 199

Query: 231 -------NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
                  + MP R+LV W+++I G+A+N+  ++A+  ++ ++  G  A+++ +  V+ +C
Sbjct: 200 KSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSC 259

Query: 284 TGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
             L  L +G + H +V+  K   +LIL  A++DMY +CG++E A+ VF ++ +KDV+ W+
Sbjct: 260 AHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWT 319

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
            +I+GLA +GY+++AL  F  M      P  IT   VL ACSHAG VE G   F+SMK+ 
Sbjct: 320 ALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRD 379

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
           +G++P  EHY CM+DLLGRAGKL++A K + +MP +P+A  WRALLGAC++H+N ++   
Sbjct: 380 HGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGER 439

Query: 462 AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIH 521
             K +L + P+  G Y+LLSNIYA + KW +V  +R+ M+ +G+ K PG S IE++ ++H
Sbjct: 440 VGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVH 499

Query: 522 AFNVADSSHPQIDKINKHLKHLI-QKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLA 580
            F + D +HP+I+KI +  + +I  K+   GY  +T   + D++ E+KE ++  HSEKLA
Sbjct: 500 EFTIGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLA 559

Query: 581 IVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
           I +G+M +     IRI KNLR+C DCHT  KL +K+    +++RD  R+HHF++G CSC 
Sbjct: 560 IAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCM 619

Query: 641 DYW 643
           DYW
Sbjct: 620 DYW 622



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 143/317 (45%), Gaps = 40/317 (12%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+  D++T+  L+K C            H   +  GFE + ++ N L++M+     +  A
Sbjct: 112 GLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAA 171

Query: 129 QVLFDQMPERNVVSWTTMISAY--C-DAKMN----------------------------D 157
           + +F +M   +VVSWT MI+ Y  C DAK                              +
Sbjct: 172 RSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFE 231

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALI 214
           KA+E    +  EGV  N      V+ +C    +L +  + H  +++     ++ + +A++
Sbjct: 232 KAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVV 291

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           D+YA+ G +  A  VF ++P +D++ W ++I G A +   ++AL  +  M + GF     
Sbjct: 292 DMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDI 351

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKYDHD----LILNNALLDMYCKCGSLEDAMSVFS 330
           T T+VL AC+   ++E G ++    +K DH     L     ++D+  + G L  A     
Sbjct: 352 TFTAVLTACSHAGMVERGLEI-FESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVL 410

Query: 331 RM-IQKDVISWSTMISG 346
           +M ++ +   W  ++  
Sbjct: 411 KMPVKPNAPIWRALLGA 427



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 113/233 (48%), Gaps = 28/233 (12%)

Query: 40  SSLLDDFTRF-CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHN 98
           S+++  + R  C+++    A++   A+Q  GV A+      +I  C    A+   +  H 
Sbjct: 218 STMISGYARNNCFEK----AVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHE 273

Query: 99  HVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
           +V+         L   +++M+ +   +E+A ++F+Q+PE++V+ WT +I+        +K
Sbjct: 274 YVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEK 333

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVG---FES---DVFVRSA 212
           AL     M ++G  P   T++AVL AC         H G+++ G   FES   D  V   
Sbjct: 334 ALWYFSEMAKKGFVPRDITFTAVLTACS--------HAGMVERGLEIFESMKRDHGVEPR 385

Query: 213 L------IDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGG--FAQNSDVDE 256
           L      +D+  + G+LR AE    +MP + +  +W +++G     +N +V E
Sbjct: 386 LEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGE 438


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/524 (41%), Positives = 318/524 (60%), Gaps = 14/524 (2%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE---GVRPNMFTYSAV 181
           ++EA+ +FD+M ERNV++WTTMI+ Y   K  D A +L   M  +        +  Y+  
Sbjct: 188 VDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTEVSWTSMLLGYTLS 247

Query: 182 LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
            R  D+      +            V   +A+I    ++GE+  A  VF++M  RD   W
Sbjct: 248 GRIEDAEEFFEVMPM--------KPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATW 299

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
             +I  + +     EAL L+ +M+R G      +L S+L  C  LA L+ G QVH H+++
Sbjct: 300 RGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVR 359

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
             +D D+ + + L+ MY KCG L  A  VF R   KD+I W+++ISG A +G  +EALK+
Sbjct: 360 CQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKV 419

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F  M +S   PN +T++ +L ACS+ G +E+G   F+SM+  + + P  EHYSC +D+LG
Sbjct: 420 FHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLG 479

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           RAGK+ +A++LI+ M  +PDA  W ALLGACK H   DLA  AAKK+  ++P++ G YIL
Sbjct: 480 RAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIEPENAGPYIL 539

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD-SSHPQIDKINK 538
           LS+I A+  KW +VAE+RK MR + ++K PGCSWIEV K++H F      +HP+   I  
Sbjct: 540 LSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKVHMFTRGGIRNHPEQAMILM 599

Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRK 598
            L+     L   GY+PD ++VL D++ E+K DS+  HSE+LA+ +GL+ L +G  IR+ K
Sbjct: 600 MLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMK 659

Query: 599 NLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           NLR+CGDCH   KL +K+  + I++RD  R+HHF +G CSC DY
Sbjct: 660 NLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDY 703



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 176/380 (46%), Gaps = 48/380 (12%)

Query: 107 PETFLV--NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
           PE  +V  N L++ ++K  ++EEA+ +F+ MPERNVVSWT M+  Y    M  +A ELL 
Sbjct: 75  PERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEA-ELLF 133

Query: 165 FMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           + + E    +       L     +   R+L+     +    DV   + +I    + G + 
Sbjct: 134 WRMPERNEVSWTVMFGGLIDGGRIDDARKLY----DMMPGKDVVASTNMIGGLCREGRVD 189

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
            A  +F+EM  R+++ W ++I G+ QN  VD A  L++ M        + + TS+L   T
Sbjct: 190 EAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPE----KTEVSWTSMLLGYT 245

Query: 285 GLALLELGTQ-VHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
               +E   +   V  +K    +I  NA++    + G +  A  VF +M  +D  +W  M
Sbjct: 246 LSGRIEDAEEFFEVMPMK---PVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGM 302

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS-----------HAGFVE--- 389
           I    + G+  EAL+LF  M+   ++P++ +++ +L  C+           HA  V    
Sbjct: 303 IKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQF 362

Query: 390 DGWNHFKSM--------------KKFYGIDPGRE--HYSCMIDLLGRAGKLQEAVKLIHE 433
           DG  +  S+              K  +   P ++   ++ +I      G  +EA+K+ HE
Sbjct: 363 DGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHE 422

Query: 434 MPYE---PDAVTWRALLGAC 450
           MP     P+ VT  A+L AC
Sbjct: 423 MPLSGTMPNKVTLIAILTAC 442



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 145/331 (43%), Gaps = 56/331 (16%)

Query: 121 KFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSA 180
           +   + EA+  FD +  + + SW +++S Y    +  +A +    M  E    N+ +++ 
Sbjct: 29  RIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQ----MFDEMPERNIVSWNG 84

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           ++       ++ +    + ++  E +V   +A++  Y + G +  AE +F  MP R+ V 
Sbjct: 85  LVSGYIKNRMIEEAR-NVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEVS 143

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           W  + GG      +D+A  LY  M                                    
Sbjct: 144 WTVMFGGLIDGGRIDDARKLYDMMP----------------------------------- 168

Query: 301 KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
               D++ +  ++   C+ G +++A  +F  M +++VI+W+TMI+G  QN     A KLF
Sbjct: 169 --GKDVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLF 226

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC--MIDLL 418
           E M     +   ++   +L   + +G +ED        ++F+ + P +   +C  MI  L
Sbjct: 227 EVMP----EKTEVSWTSMLLGYTLSGRIEDA-------EEFFEVMPMKPVIACNAMIVAL 275

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           G  G++ +A ++  +M  + D  TWR ++ A
Sbjct: 276 GEVGEIVKARRVFDQME-DRDNATWRGMIKA 305



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 102/208 (49%), Gaps = 11/208 (5%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    MQ  GVR    +   ++  C    +++  + VH H++   F+ + ++ ++L+ 
Sbjct: 315 ALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMT 374

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+VK   L +A+++FD+ P ++++ W ++IS Y    + ++AL++   M   G  PN  T
Sbjct: 375 MYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVT 434

Query: 178 YSAVLRAC-------DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
             A+L AC       + L I   +     K      V   S  +D+  + G++  A  + 
Sbjct: 435 LIAILTACSYGGKLEEGLEIFESMES---KFCVTPTVEHYSCTVDMLGRAGKVDKAMELI 491

Query: 231 NEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
           N M  + D  VW +++G    +S +D A
Sbjct: 492 NSMTIKPDATVWGALLGACKTHSRLDLA 519



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 112/261 (42%), Gaps = 55/261 (21%)

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           I   +++G++  A   F+ +  + +  WNSI+ G+  N    EA  ++  M         
Sbjct: 24  ISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMP-------- 75

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
                                        + +++  N L+  Y K   +E+A +VF  M 
Sbjct: 76  -----------------------------ERNIVSWNGLVSGYIKNRMIEEARNVFEIMP 106

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393
           +++V+SW+ M+ G  Q G   EA  LF  M   R + ++  + G L      G ++D   
Sbjct: 107 ERNVVSWTAMVKGYVQEGMVVEAELLFWRMP-ERNEVSWTVMFGGLI---DGGRIDDA-- 160

Query: 394 HFKSMKKFYGIDPGREHYSC--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
                +K Y + PG++  +   MI  L R G++ EA ++  EM  E + +TW  ++    
Sbjct: 161 -----RKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDEM-RERNVITWTTMITGYG 214

Query: 452 VHRNTDLAICAAKKILNLDPQ 472
            ++  D+    A+K+  + P+
Sbjct: 215 QNKRVDV----ARKLFEVMPE 231



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 20/208 (9%)

Query: 302 YDHDLILNNAL-LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
           Y     +NN+  +    + G + +A   F  +  K + SW++++SG   NG  +EA ++F
Sbjct: 12  YSTSTGVNNSFEISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMF 71

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE--HYSCMIDLL 418
           + M     + N ++  G++        +E+  N F+ M       P R    ++ M+   
Sbjct: 72  DEMP----ERNIVSWNGLVSGYIKNRMIEEARNVFEIM-------PERNVVSWTAMVKGY 120

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP-QDPGTY 477
            + G + EA  L   MP E + V+W  + G        D     A+K+ ++ P +D    
Sbjct: 121 VQEGMVVEAELLFWRMP-ERNEVSWTVMFGGLIDGGRID----DARKLYDMMPGKDVVAS 175

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGI 505
             +        + DE  E+   MR R +
Sbjct: 176 TNMIGGLCREGRVDEAREIFDEMRERNV 203


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/582 (36%), Positives = 344/582 (59%), Gaps = 8/582 (1%)

Query: 51  YQRD--LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           Y++D     A+     M+  G +    T++ ++K  +  H     + +H   ++ GF  +
Sbjct: 219 YEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRD 278

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             + N +L+ + K   + E + LF++MPE + VS+  +IS+Y  A+  +++L L   M  
Sbjct: 279 ASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQC 338

Query: 169 EGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
            G     F ++ +L       SL + RQ+HC  I    +S + V ++L+D+YAK      
Sbjct: 339 MGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDE 398

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           AE +F  +  R  V W ++I G+ Q       L L+ +M+ A   ADQST  +VL+A  G
Sbjct: 399 AELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAG 458

Query: 286 LALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
            A L LG Q+H  +++  +  ++   + L+DMY KCGS++DA+ VF  M  ++ +SW+ +
Sbjct: 459 FASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNAL 518

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           IS  A NG  + A+  F  M  S ++P+ ++I+GVL ACSH GFVE G   F++M   YG
Sbjct: 519 ISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYG 578

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           I P ++HY+CM+DLLGR G+  EA KL+ EMP+EPD + W ++L AC++++N  LA  AA
Sbjct: 579 ITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAA 638

Query: 464 KKILNLDP-QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           +++ +++  +D   Y+ +SNIYA + KW+ V  V+K MR RGI K P  SW+EVN +IH 
Sbjct: 639 EQLFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRERGIKKVPAYSWVEVNHKIHV 698

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F+  D +HP  D+I K +  L  ++   GY PDT+ V+QD++ + K +S++YHSE+LA+ 
Sbjct: 699 FSSNDQTHPNGDEIVKKINELTTEIEREGYKPDTSSVVQDIDEQMKIESLKYHSERLAVA 758

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIR 624
           F L+S  +G  I + KNLR C DCH   KL +K+  + I  +
Sbjct: 759 FALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKRVITTQ 800



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 141/263 (53%), Gaps = 7/263 (2%)

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
           T   N +++ +VK   L  A+ LFD MP+R VV+WT ++  Y      D+A +L   M R
Sbjct: 75  TVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCR 134

Query: 169 EGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVF--VRSALIDIYAKLGEL 223
               P+  T++ +L  C+  +    + Q+H   +K+GF++++F  V + L+  Y ++  L
Sbjct: 135 SCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRL 194

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
             A  +F E+  +D V +N++I G+ ++    EA++L+ +M+++G      T + VL+A 
Sbjct: 195 DLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAV 254

Query: 284 TGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
            GL    LG Q+H       +  D  + N +L  Y K   + +  ++F+ M + D +S++
Sbjct: 255 VGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYN 314

Query: 342 TMISGLAQNGYSQEALKLFESMK 364
            +IS  +Q    +E+L LF  M+
Sbjct: 315 VVISSYSQAEQYEESLNLFREMQ 337



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 97/175 (55%), Gaps = 4/175 (2%)

Query: 211 SALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
           + +I  Y K+G+L +A  +F+ MP R +V W  ++G +A N+  DEA  L+++M R+   
Sbjct: 79  NTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTL 138

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILN--NALLDMYCKCGSLEDAM 326
            D  T T++L  C          QVH   +K  +D +L L   N LL  YC+   L+ A 
Sbjct: 139 PDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLAC 198

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
            +F  ++ KD ++++T+I+G  ++G   EA+ LF  M+ S  KP+  T  GVL A
Sbjct: 199 VLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKA 253



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 288 LLELGTQVHVHVLKYDH----DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           LL  G QV   +  YD     + +  N ++  Y K G L  A  +F  M  + V++W+ +
Sbjct: 54  LLRRG-QVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTIL 112

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
           +   A N +  EA KLF  M  S   P+Y+T   +L  C+ A
Sbjct: 113 MGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPGCNDA 154


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/580 (37%), Positives = 336/580 (57%), Gaps = 42/580 (7%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           +R D +T   ++K   A   V   + +H  V+  G E ++F+   L++M+VK   L    
Sbjct: 134 IRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGL 193

Query: 130 VLFDQMPERN----VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
            LFD+ P+RN    ++ W  +I+  C      KA  L   M                   
Sbjct: 194 QLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMP------------------ 235

Query: 186 DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
                             E +    ++LI+ + + G+L  A  +F +MP +++V W ++I
Sbjct: 236 ------------------ERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMI 277

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD 305
            GF+QN D ++AL+++ RM   G   +  T+ S L ACT +  L++G ++H ++      
Sbjct: 278 NGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQ 337

Query: 306 LI--LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
           L   +  AL+DMY KCG+++ A  VF     KD+++WS MI G A +G   +AL+ F  M
Sbjct: 338 LNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKM 397

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
           K + I P+ +  + +L ACSH+G V+ G N F+SM+  Y I+P  +HY+ ++DLLGRAG+
Sbjct: 398 KSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGR 457

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L EA+  I  MP  PD V W AL  AC+ H+N ++A   A+K+L L+P+ PG+Y+ LSN+
Sbjct: 458 LDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNV 517

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           YA   +W++V  VR  M+ RG+ K+PG S+IEV  Q+H+F   D +H + ++I+  L+ +
Sbjct: 518 YAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEI 577

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
                  GY P+T +VL ++E E+KED++  HSEKLA+ FGL+S   G TIRI KNLR+C
Sbjct: 578 TASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVC 637

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GDCH+  K  +K+  + I++RD  R+HHF+DG CSCGDYW
Sbjct: 638 GDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 163/394 (41%), Gaps = 73/394 (18%)

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           +  ++ A ++L  L Q+H  I      S+  V + LI     L  L  A  +F      +
Sbjct: 43  FIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPN 102

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           L V+N++I G A+NS  + +++ +  M R     D+ TL  VL++   L  + LG  +H 
Sbjct: 103 LFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHG 162

Query: 298 HVLK--YDHDLILNNALLDMY-----------------------------------CKCG 320
            V+K   + D  +  +L+DMY                                   CK G
Sbjct: 163 GVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVG 222

Query: 321 SLEDAMSVFSRMIQKDVISW-------------------------------STMISGLAQ 349
            L  A S+F  M +++  SW                               +TMI+G +Q
Sbjct: 223 DLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQ 282

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           NG  ++AL +F  M    ++PN +T+V  L AC+  G ++ G     +     G    R 
Sbjct: 283 NGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVG-ERIHNYLSSNGFQLNRG 341

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI-CAAK-KIL 467
             + ++D+  + G ++ A ++  E   + D +TW  ++    +H   D A+ C  K K  
Sbjct: 342 IGTALVDMYAKCGNIKSASRVFVETKGK-DLLTWSVMIWGWAIHGCFDQALQCFVKMKSA 400

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
            ++P D   ++ +    ++S   D+     ++MR
Sbjct: 401 GINP-DEVIFLAILTACSHSGNVDQGLNFFESMR 433



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 21/210 (10%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           F    D  +A+     M   GVR + +T    +  C    A++  + +HN++ S GF+  
Sbjct: 280 FSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLN 339

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             +   L++M+ K   ++ A  +F +   +++++W+ MI  +      D+AL+  + M  
Sbjct: 340 RGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKS 399

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVG---FES---DVFVRSAL------IDI 216
            G+ P+   + A+L AC         H G +  G   FES   D  +   +      +D+
Sbjct: 400 AGINPDEVIFLAILTACS--------HSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDL 451

Query: 217 YAKLGELRNAECVFNEMPTR-DLVVWNSII 245
             + G L  A      MP   D V+W ++ 
Sbjct: 452 LGRAGRLDEALSFIQSMPINPDFVIWGALF 481



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 20/225 (8%)

Query: 294 QVH-VHVLKYDHDLILNN----ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
           Q+H +H   + H+L  N+     L+   C   SL+ A+S+F      ++  ++ +I GLA
Sbjct: 55  QLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLA 114

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN---HFKSMKKFYGID 405
           +N   + ++  F  M    I+P+ +T+  VL   S A  V+ G     H   MK   G++
Sbjct: 115 ENSRFEGSVSHFVLMLRLSIRPDRLTLPFVL--KSVAALVDVGLGRCLHGGVMK--LGLE 170

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA---VTWRALL-GACKVHRNTDLAIC 461
                   ++D+  + G+L   ++L  E P    A   + W  L+ G CKV    DL+  
Sbjct: 171 FDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKV---GDLSK- 226

Query: 462 AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           AA     +  ++ G++  L N +  +   D   E+   M  + + 
Sbjct: 227 AASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVV 271


>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/592 (36%), Positives = 339/592 (57%), Gaps = 40/592 (6%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A++    M+  G+ ++  T+  ++  C +  A    + VH  ++  GF P  ++ + L+
Sbjct: 219 KAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALV 278

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   L  A+++ D M   +VV W +MI         ++AL L   M    +R + F
Sbjct: 279 DMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDF 338

Query: 177 TYSAVLRA---CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           TY +VL++   C +L I   +H   IK GF++   V +AL+D+YAK G L  A  VFN++
Sbjct: 339 TYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKI 398

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
             +D++ W S++ G+  N   ++AL L+  M+ A    DQ  +  V  AC  L ++E G 
Sbjct: 399 LDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFGR 458

Query: 294 QVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           QVH + +K     +L+  N+L+ MY KCG LEDA+ V   M  ++VISW+ +I G AQN 
Sbjct: 459 QVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVXDSMETRNVISWTAIIVGYAQN- 517

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
                                             G VE G ++F+SM+K YGI P  + Y
Sbjct: 518 ----------------------------------GLVETGQSYFESMEKVYGIKPASDRY 543

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +CMIDLLGRAGK+ EA  L++ M  EPDA  W++LL AC+VH N +L   A K ++ L+P
Sbjct: 544 ACMIDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLELGERAGKNLIKLEP 603

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
            +   Y+LLSN+++ + +W++ A +R+ M+  GI +EPG SWIE+  Q+H F   D SHP
Sbjct: 604 SNSLPYVLLSNMFSVAGRWEDAAHIRRAMKTMGIXQEPGYSWIEMKSQVHTFISEDRSHP 663

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
              +I   +  ++  +   G+ PD N+ L+D++ E KE S+ YHSEKLA+ FGL+++ +G
Sbjct: 664 LAAEIYSKIDEMMILIKEAGHVPDMNFALRDMDEEAKERSLAYHSEKLAVAFGLLTVAKG 723

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             IRI KNLR+CGDCH+  K  + +  + I++RD   +HHF +G CSCGD+W
Sbjct: 724 APIRIFKNLRVCGDCHSAMKYISSIFKRHIILRDLNCFHHFIEGKCSCGDFW 775



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 189/346 (54%), Gaps = 8/346 (2%)

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           + +  NI+++ +     L EA+ LF++ P  N ++W++++S YC      + L     M 
Sbjct: 67  DKYTWNIMISAYANLGNLVEARKLFNETPIXNSITWSSLVSGYCKNGCEVEGLRQFSQMW 126

Query: 168 REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
            +G +P+ +T  +VLRAC +L +L   + +HC  IK+  E+++FV + L+D+Y+K   L 
Sbjct: 127 SDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLL 186

Query: 225 NAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
            AE +F  +P R + V W +++ G+AQN +  +A+  +K M+  G  ++  T  S+L AC
Sbjct: 187 EAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTAC 246

Query: 284 TGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
           T ++    G QVH  ++   +  ++ + +AL+DMY KCG L  A  +   M   DV+ W+
Sbjct: 247 TSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWN 306

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
           +MI G   +GY +EAL LF  M    I+ +  T   VL + +    ++ G     S+   
Sbjct: 307 SMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIG-ESVHSLTIK 365

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
            G D  +   + ++D+  + G L  A+ + +++  + D ++W +L+
Sbjct: 366 TGFDACKTVSNALVDMYAKQGNLSCALDVFNKI-LDKDVISWTSLV 410



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 139/276 (50%), Gaps = 6/276 (2%)

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           D +  + +I  YA LG L  A  +FNE P  + + W+S++ G+ +N    E L  + +M 
Sbjct: 67  DKYTWNIMISAYANLGNLVEARKLFNETPIXNSITWSSLVSGYCKNGCEVEGLRQFSQMW 126

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLE 323
             G    Q TL SVLRAC+ L+LL  G  +H + +K   + ++ +   L+DMY KC  L 
Sbjct: 127 SDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLL 186

Query: 324 DAMSVFSRMI-QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
           +A  +F  +  +K+ + W+ M++G AQNG S +A++ F+ M+   ++ N+ T   +L AC
Sbjct: 187 EAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTAC 246

Query: 383 SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
           +       G         + G  P     S ++D+  + G L  A  ++  M  + D V 
Sbjct: 247 TSISAYAFG-RQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEID-DVVC 304

Query: 443 WRALLGACKVHRNTDLAICAAKKILNLDPQ-DPGTY 477
           W +++  C  H   + A+    K+ N D + D  TY
Sbjct: 305 WNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTY 340



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 152/333 (45%), Gaps = 42/333 (12%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           +  A+   H M    +R D  TY  ++K   +   ++  + VH+  +  GF+    + N 
Sbjct: 318 MEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNA 377

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           L++M+ K   L  A  +F+++ +++V+SWT++++ Y     ++KAL+L   M    V  +
Sbjct: 378 LVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLD 437

Query: 175 MFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
            F  + V  AC  L ++   RQ+H   IK    S +   ++LI +YAK G L +A  V +
Sbjct: 438 QFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVXD 497

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK--------------------RAG--- 268
            M TR+++ W +II G+AQN  V+   + ++ M+                    RAG   
Sbjct: 498 SMETRNVISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPASDRYACMIDLLGRAGKIN 557

Query: 269 ----------FAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALL-DMYC 317
                        D +   S+L AC     LELG +   +++K +    L   LL +M+ 
Sbjct: 558 EAEHLLNRMDVEPDATIWKSLLSACRVHGNLELGERAGKNLIKLEPSNSLPYVLLSNMFS 617

Query: 318 KCGSLEDAMSVFSRM-----IQKDVISWSTMIS 345
             G  EDA  +   M      Q+   SW  M S
Sbjct: 618 VAGRWEDAAHIRRAMKTMGIXQEPGYSWIEMKS 650


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/589 (38%), Positives = 344/589 (58%), Gaps = 10/589 (1%)

Query: 65  MQCHG-VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE---PETFLVNILLNMHV 120
           MQ HG +R ++ T   L+       A+ +   +H + L    E    +  +   LL+M+ 
Sbjct: 192 MQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYA 251

Query: 121 KFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV-RPNMFTYS 179
           K   L  A  +F  MP RN V+W+ +I  +       +A  L   ML EG+   +  + +
Sbjct: 252 KCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVA 311

Query: 180 AVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           + LR C SL  L    QLH  I K G  +D+   ++L+ +YAK G +  A   F+E+  +
Sbjct: 312 SALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVK 371

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           D + + +++ G  QN   +EA  ++K+M+      D +T+ S++ AC+ LA L+ G   H
Sbjct: 372 DTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSH 431

Query: 297 VHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
             V+     L  +  N+L+DMY KCG ++ +  VF +M  +DV+SW+TMI+G   +G  +
Sbjct: 432 GSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGK 491

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414
           EA  LF  MK     P+ +T + ++ ACSH+G V +G + F +M   YGI P  EHY CM
Sbjct: 492 EATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICM 551

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474
           +DLL R G L EA + I  MP + D   W ALLGAC++H+N DL    ++ I  L P+  
Sbjct: 552 VDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGT 611

Query: 475 GTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQID 534
           G ++LLSNI++ + ++DE AEVR   + +G  K PG SWIE+N  +HAF   D SHP   
Sbjct: 612 GNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSR 671

Query: 535 KINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTI 594
            I   L +++  +  +GY  DT++VLQDLE E+KE ++ YHSEKLAI FG++SL + KTI
Sbjct: 672 DIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTI 731

Query: 595 RIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            + KNLR+CGDCHT  K    + N+TI++RD  R+HHF++G CSCG++W
Sbjct: 732 FVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 131/447 (29%), Positives = 222/447 (49%), Gaps = 23/447 (5%)

Query: 18  ARQ-FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVT 76
           ARQ F     P   + N + R  S L      F    DL R+M          V  +  T
Sbjct: 53  ARQVFDRIPAPDARAYNALIRAYSWL----GPFHAAIDLYRSMLRFR------VAPNKYT 102

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           +  ++K C A   +   + +H H  + G   + F+   L++++++ +    A+ +F +MP
Sbjct: 103 FPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMP 162

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNMFTYSAVLRACDSLIILRQ-- 193
            R+VV+W  M++ Y +  M   A+  L+ M    G+RPN  T  ++L        L Q  
Sbjct: 163 MRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGT 222

Query: 194 -LHCGIIKVGFESD---VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
            +H   ++   E +   V + +AL+D+YAK  +L  A  VF+ MP R+ V W+++IGGF 
Sbjct: 223 SIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFV 282

Query: 250 QNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDL 306
               + EA NL+K M   G      +++ S LR C  LA L +GTQ+H  + K     DL
Sbjct: 283 LCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADL 342

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
             +N+LL MY K G + +A   F  +  KD IS+  ++SG  QNG ++EA  +F+ M+  
Sbjct: 343 TASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQAC 402

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
            ++P+  T+V ++ ACSH   ++ G     S+    G+       + +ID+  + GK+  
Sbjct: 403 NMEPDIATMVSLIPACSHLAALQHGKCSHGSV-IIRGLALETSICNSLIDMYAKCGKIDL 461

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVH 453
           + ++  +MP   D V+W  ++    +H
Sbjct: 462 SRQVFDKMPAR-DVVSWNTMIAGYGIH 487



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 174/368 (47%), Gaps = 14/368 (3%)

Query: 116 LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
           L  H+    L  A+ +FD++P  +  ++  +I AY        A++L   MLR  V PN 
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 176 FTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           +T+  VL+AC +L+ LR    +H      G  +D+FV +ALID+Y +      A  VF +
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEAL-NLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           MP RD+V WN+++ G+A +     A+ +L       G   + STL S+L        L  
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 292 GTQVHVHVLKY-----DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           GT +H + L+      +  +++  ALLDMY KC  L  A  VF  M  ++ ++WS +I G
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGG 280

Query: 347 LAQNGYSQEALKLFESMKVSRI-KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
                   EA  LF+ M V  +   +  ++   L  C+    +  G     ++    GI 
Sbjct: 281 FVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMG-TQLHALIAKSGIH 339

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
                 + ++ +  +AG + EA     E+  + D +++ ALL  C  +   + A    KK
Sbjct: 340 ADLTASNSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSGCVQNGKAEEAFLVFKK 398

Query: 466 I--LNLDP 471
           +   N++P
Sbjct: 399 MQACNMEP 406


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/589 (38%), Positives = 344/589 (58%), Gaps = 10/589 (1%)

Query: 65  MQCHG-VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE---PETFLVNILLNMHV 120
           MQ HG +R ++ T   L+       A+ +   +H + L    E    +  +   LL+M+ 
Sbjct: 192 MQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYA 251

Query: 121 KFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV-RPNMFTYS 179
           K   L  A  +F  MP RN V+W+ +I  +       +A  L   ML EG+   +  + +
Sbjct: 252 KCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVA 311

Query: 180 AVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           + LR C SL  L    QLH  I K G  +D+   ++L+ +YAK G +  A   F+E+  +
Sbjct: 312 SALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVK 371

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           D + + +++ G  QN   +EA  ++K+M+      D +T+ S++ AC+ LA L+ G   H
Sbjct: 372 DTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSH 431

Query: 297 VHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
             V+     L  +  N+L+DMY KCG ++ +  VF +M  +DV+SW+TMI+G   +G  +
Sbjct: 432 GSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGK 491

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414
           EA  LF  MK     P+ +T + ++ ACSH+G V +G + F +M   YGI P  EHY CM
Sbjct: 492 EATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICM 551

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474
           +DLL R G L EA + I  MP + D   W ALLGAC++H+N DL    ++ I  L P+  
Sbjct: 552 VDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGT 611

Query: 475 GTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQID 534
           G ++LLSNI++ + ++DE AEVR   + +G  K PG SWIE+N  +HAF   D SHP   
Sbjct: 612 GNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSR 671

Query: 535 KINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTI 594
            I   L +++  +  +GY  DT++VLQDLE E+KE ++ YHSEKLAI FG++SL + KTI
Sbjct: 672 DIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTI 731

Query: 595 RIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            + KNLR+CGDCHT  K    + N+TI++RD  R+HHF++G CSCG++W
Sbjct: 732 FVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 130/447 (29%), Positives = 222/447 (49%), Gaps = 23/447 (5%)

Query: 18  ARQ-FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVT 76
           ARQ F     P   + N + R  S L      F    DL R+M          V  +  T
Sbjct: 53  ARQVFDRIPAPDARAYNALIRAYSWL----GPFHAAIDLYRSMLRFR------VAPNKYT 102

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           +  ++K C A   +   + +H H  + G   + F+   L++++++ +    A+ +F +MP
Sbjct: 103 FPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMP 162

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNMFTYSAVLRAC---DSLIILR 192
            R+VV+W  M++ Y +  M   A+  L+ M    G+RPN  T  ++L       +L    
Sbjct: 163 MRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGT 222

Query: 193 QLHCGIIKVGFESD---VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
            +H   ++   E +   V + +AL+D+YAK  +L  A  VF+ MP R+ V W+++IGGF 
Sbjct: 223 SIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFV 282

Query: 250 QNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDL 306
               + EA NL+K M   G      +++ S LR C  LA L +GTQ+H  + K     DL
Sbjct: 283 LCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADL 342

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
             +N+LL MY K G + +A   F  +  KD IS+  ++SG  QNG ++EA  +F+ M+  
Sbjct: 343 TASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQAC 402

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
            ++P+  T+V ++ ACSH   ++ G     S+    G+       + +ID+  + GK+  
Sbjct: 403 NMEPDIATMVSLIPACSHLAALQHGKCSHGSV-IIRGLALETSICNSLIDMYAKCGKIDL 461

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVH 453
           + ++  +MP   D V+W  ++    +H
Sbjct: 462 SRQVFDKMPAR-DVVSWNTMIAGYGIH 487



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 174/368 (47%), Gaps = 14/368 (3%)

Query: 116 LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
           L  H+    L  A+ +FD++P  +  ++  +I AY        A++L   MLR  V PN 
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 176 FTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           +T+  VL+AC +L+ LR    +H      G  +D+FV +ALID+Y +      A  VF +
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEAL-NLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           MP RD+V WN+++ G+A +     A+ +L       G   + STL S+L        L  
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 292 GTQVHVHVLKY-----DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           GT +H + L+      +  +++  ALLDMY KC  L  A  VF  M  ++ ++WS +I G
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGG 280

Query: 347 LAQNGYSQEALKLFESMKVSRI-KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
                   EA  LF+ M V  +   +  ++   L  C+    +  G     ++    GI 
Sbjct: 281 FVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMG-TQLHALIAKSGIH 339

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
                 + ++ +  +AG + EA     E+  + D +++ ALL  C  +   + A    KK
Sbjct: 340 ADLTASNSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSGCVQNGKAEEAFLVFKK 398

Query: 466 I--LNLDP 471
           +   N++P
Sbjct: 399 MQACNMEP 406


>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 720

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/602 (38%), Positives = 358/602 (59%), Gaps = 10/602 (1%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE-P 107
           +   R    A++    M  + V  D  T + + K        +EA+  H   +  G E  
Sbjct: 122 YIKHRRSKEAVEMYRLMISNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVS 181

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
             F+ + L++M+VKF    EA+++ D++ E++VV  T +I  Y     + +A++    ML
Sbjct: 182 NVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSML 241

Query: 168 REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
            E V+PN +TY++VL +C +L  +   + +H  ++K GFES +  +++L+ +Y +   + 
Sbjct: 242 VEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVD 301

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
           ++  VF  +   + V W S+I G  QN   + AL  +++M R     +  TL+S LR C+
Sbjct: 302 DSLLVFKCIKYPNQVTWTSLISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCS 361

Query: 285 GLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            LA+ E G QVH  V KY  D D    + L+++Y KCG  + A  VF  + + DVIS +T
Sbjct: 362 NLAMFEEGRQVHGIVSKYGFDRDKYAGSGLIELYGKCGCSDMARLVFDTLSEVDVISLNT 421

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           MI   AQNG+ +EAL+LFE M    ++PN +T++ VL AC+++G VE+G   F S +K  
Sbjct: 422 MIYSYAQNGFGREALELFERMINLGLQPNDVTVLSVLLACNNSGLVEEGCELFDSFRK-D 480

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            I    +HY+CM+D+LGRAG+L+EA  LI E+   PD V WR LL ACKVHR  ++A   
Sbjct: 481 KIMLTNDHYACMVDMLGRAGRLEEAEMLITEVT-NPDLVLWRTLLSACKVHRKVEMAERI 539

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
            +KIL + P D GT ILLSN+YA++ KW  V E++  M+   + K P  SW+E++K+ H 
Sbjct: 540 TRKILEIAPGDEGTLILLSNLYASTGKWKRVIEMKSKMKEMKLKKNPAMSWVEIDKETHT 599

Query: 523 FNVAD-SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAI 581
           F   D  SHP  ++I ++L+ LI+K   +GY  D + V QD+E   KE S+  HSEKLAI
Sbjct: 600 FMAGDLFSHPNSEQILENLEELIKKAKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAI 659

Query: 582 VFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641
            F +     G +IRI KNLR+C DCH++ K+ +++  + I+ RD  R+HHF+DG+CSCGD
Sbjct: 660 AFAVWR-NVGGSIRILKNLRVCVDCHSWIKIVSRIIKREIICRDSKRFHHFRDGSCSCGD 718

Query: 642 YW 643
           YW
Sbjct: 719 YW 720



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 122/438 (27%), Positives = 229/438 (52%), Gaps = 12/438 (2%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           T+++L++ C+   ++   K +   +L  GF P     + L++  +K   +  A+ LFD M
Sbjct: 49  TFSQLLRQCIDERSISGIKNIQAQMLKSGF-PVELSGSKLVDASLKCGEIGYARQLFDGM 107

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQL- 194
           PER++V+W ++I+ Y   + + +A+E+   M+   V P+ +T S+V +A   L + ++  
Sbjct: 108 PERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNVLPDEYTLSSVFKAFSDLSLEKEAQ 167

Query: 195 --HCGIIKVGFE-SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
             H   + +G E S+VFV SAL+D+Y K G+ R A+ V + +  +D+V+  ++I G++Q 
Sbjct: 168 RSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQK 227

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILN 309
            +  EA+  ++ M       ++ T  SVL +C  L  +  G  +H  ++K  ++  L   
Sbjct: 228 GEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQ 287

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
            +LL MY +C  ++D++ VF  +   + ++W+++ISGL QNG  + AL  F  M    +K
Sbjct: 288 TSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSLISGLVQNGREETALIEFRKMMRDSVK 347

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           PN  T+   L  CS+    E+G      + K YG D  +   S +I+L G+ G   +  +
Sbjct: 348 PNSFTLSSALRGCSNLAMFEEGRQVHGIVSK-YGFDRDKYAGSGLIELYGKCG-CSDMAR 405

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA--NS 487
           L+ +   E D ++   ++ +   +     A+   ++++NL  Q P    +LS + A  NS
Sbjct: 406 LVFDTLSEVDVISLNTMIYSYAQNGFGREALELFERMINLGLQ-PNDVTVLSVLLACNNS 464

Query: 488 QKWDEVAEVRKTMRARGI 505
              +E  E+  + R   I
Sbjct: 465 GLVEEGCELFDSFRKDKI 482



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 176/350 (50%), Gaps = 14/350 (4%)

Query: 177 TYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T+S +LR C    S+  ++ +   ++K GF  ++   S L+D   K GE+  A  +F+ M
Sbjct: 49  TFSQLLRQCIDERSISGIKNIQAQMLKSGFPVEL-SGSKLVDASLKCGEIGYARQLFDGM 107

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           P R +V WNSII  + ++    EA+ +Y+ M       D+ TL+SV +A + L+L +   
Sbjct: 108 PERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNVLPDEYTLSSVFKAFSDLSLEKEAQ 167

Query: 294 QVH--VHVLKYD-HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
           + H    +L  +  ++ + +AL+DMY K G   +A  V  R+ +KDV+  + +I G +Q 
Sbjct: 168 RSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQK 227

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
           G   EA+K F+SM V +++PN  T   VL +C +   + +G      M K  G +     
Sbjct: 228 GEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVK-SGFESALAS 286

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
            + ++ +  R   + +++ +   + Y P+ VTW +L+     +   + A+   +K++  D
Sbjct: 287 QTSLLTMYLRCSLVDDSLLVFKCIKY-PNQVTWTSLISGLVQNGREETALIEFRKMMR-D 344

Query: 471 PQDPGTYILLSNIY--ANSQKWDEVAEVRKTMRARGITKE--PGCSWIEV 516
              P ++ L S +   +N   ++E  +V   +   G  ++   G   IE+
Sbjct: 345 SVKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYGFDRDKYAGSGLIEL 394


>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/599 (38%), Positives = 353/599 (58%), Gaps = 51/599 (8%)

Query: 51  YQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH-VLSGGFEPET 109
           YQR +P            G+  D  T++ + K       V E +  H   V+ G      
Sbjct: 165 YQRMVP-----------DGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNV 213

Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
           F+ + L++M+ KF  + +A+++ DQ+  ++VV +T +I  Y     + ++L++   M ++
Sbjct: 214 FVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKK 273

Query: 170 GVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           G+  N +T S+VL  C +L  L   R +H  I+K G ES                     
Sbjct: 274 GIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLES--------------------- 312

Query: 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
                       V W S+I G  QN   + AL  +++M R+    +  TL+SVLRAC+ L
Sbjct: 313 -----------AVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSL 361

Query: 287 ALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
           A+LE G Q+H  V+K+  D D  +  AL+D Y KCGS E A SVF+ +++ DV+S ++MI
Sbjct: 362 AMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMI 421

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI 404
              AQNG+  EAL+LF  MK + ++PN +T +GVL AC++AG +E+G + F S +    I
Sbjct: 422 YSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNI 481

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAK 464
           +  ++HY+CM+DLLGRAG+L+EA  LI+++    D V WR LL AC++H + ++A     
Sbjct: 482 ELTKDHYACMVDLLGRAGRLKEAEMLINQVNIS-DVVIWRTLLSACRIHGDVEMAKRVMN 540

Query: 465 KILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFN 524
           ++++L P+D GT++LLSN+YA++  W +V E++  MR   + K P  SW++V ++IH F 
Sbjct: 541 RVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFM 600

Query: 525 VADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFG 584
             D SHP    I + L+ LI+K+  +GY PDT +VLQDL+ E+K  S+ YHSEKLA+ F 
Sbjct: 601 AGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAVAFA 660

Query: 585 LM-SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           L  S  +  TIRI KNLR+CGDCHT+ K  +K+  + I+ RD  R+HHF++G CSCGDY
Sbjct: 661 LWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGDY 719



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/412 (27%), Positives = 205/412 (49%), Gaps = 71/412 (17%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           Y+ LI+ C+   ++ +   + +H L  GF     L N L++ ++K   +  A+ +FD++P
Sbjct: 81  YSSLIQQCIGIKSITDITKIQSHALKRGFHHS--LGNKLIDAYLKCGSVVYARKVFDEVP 138

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQ 193
            R++V+W +MI++Y     + +A+++   M+ +G+ P+ FT+S+V +A   L ++   ++
Sbjct: 139 HRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQR 198

Query: 194 LHCGIIKVGFE-SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            H   + +G   S+VFV SAL+D+YAK G++R+A  V +++  +D+V++ ++I G++ + 
Sbjct: 199 AHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHG 258

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNAL 312
           +  E+L +++ M + G  A++ TL+SVL  C  L  L  G  +H  ++K           
Sbjct: 259 EDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVK----------- 307

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
                    LE A            ++W+++I GL QNG  + AL  F  M  S I PN 
Sbjct: 308 -------AGLESA------------VTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNS 348

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ------- 425
            T+  VL ACS    +E G      + KF G+D  +   + +ID  G+ G  +       
Sbjct: 349 FTLSSVLRACSSLAMLEQGKQIHAIVMKF-GLDIDKYVGAALIDFYGKCGSTEIARSVFN 407

Query: 426 ------------------------EAVKLIHEMP---YEPDAVTWRALLGAC 450
                                   EA++L   M     EP+ VTW  +L AC
Sbjct: 408 GLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSAC 459



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 3/182 (1%)

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAM 326
           A F+      +S+++ C G+  +   T++  H LK      L N L+D Y KCGS+  A 
Sbjct: 72  ASFSESLQLYSSLIQQCIGIKSITDITKIQSHALKRGFHHSLGNKLIDAYLKCGSVVYAR 131

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            VF  +  + +++W++MI+   +NG S+EA+ +++ M    I P+  T   V  A S  G
Sbjct: 132 KVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLG 191

Query: 387 FVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
            V +G   H +S+    G+       S ++D+  + GK+++A +L+ +     D V + A
Sbjct: 192 LVHEGQRAHGQSVVLGVGVSNVFVG-SALVDMYAKFGKMRDA-RLVSDQVVGKDVVLFTA 249

Query: 446 LL 447
           L+
Sbjct: 250 LI 251


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/591 (36%), Positives = 345/591 (58%), Gaps = 12/591 (2%)

Query: 58   AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            A  A+  M   GV  D++++  ++  C   +  +EA+++   +L  G+     L   L++
Sbjct: 525  AFGALMEMLQGGVLPDALSFTSVLSSC---YCSQEAQVLRMCILESGYRSAC-LETALIS 580

Query: 118  MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            MH +   LE+A+ +FD+M   +VVSWT M+SA  + +   +   L   M  EGV P+ FT
Sbjct: 581  MHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFT 640

Query: 178  YSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             +  L  C    +L + + +H  + ++G E+D+ V +AL+++Y+  G+ R A   F  M 
Sbjct: 641  LATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMK 700

Query: 235  TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             RDLV WN +   +AQ     EA+ L++ M+  G   D+ T ++ L    G AL+  G  
Sbjct: 701  ARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKL 760

Query: 295  VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
             H    +   D D+ +   L+ +Y KCG L++A+S+F    Q  V+  + +I  LAQ+G+
Sbjct: 761  FHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGF 820

Query: 353  SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            S+EA+K+F  M+   ++P+  T+V ++ AC HAG VE+G + F +MK+++GI P  EHY+
Sbjct: 821  SEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYA 880

Query: 413  CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
            C +DLLGRAG+L+ A ++I +MP+E + + W +LLG CK+  + +L    A++IL LDP 
Sbjct: 881  CFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPH 940

Query: 473  DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
            +   +++LSNIY  + KW +    RK +  + +   PG SW+E+ KQ+H F   D SHPQ
Sbjct: 941  NSAAHVVLSNIYCATGKWKDADVDRKKLLDQNVKNAPGMSWLEIGKQVHEFVAGDRSHPQ 1000

Query: 533  IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
             D+I   L  L   +   GY  D      D E E KE ++ YHSE++AI FGL++     
Sbjct: 1001 TDEIYVVLDKLELLMRRAGYEADKGL---DAEDELKEKALGYHSERIAIAFGLIATPPDT 1057

Query: 593  TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            T++I KNLR+CGDCHT  K  + +  + I++RD +R+HHF +G CSC D W
Sbjct: 1058 TLKIVKNLRVCGDCHTATKYISMIMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 223/442 (50%), Gaps = 32/442 (7%)

Query: 72  ADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVL 131
           AD   Y  L++ C+  + + + K  H  + + G E   FL N L+NM+V+   LEEA  +
Sbjct: 23  ADLQEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAI 82

Query: 132 FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNMFTYSAVLRACDS--- 187
           F +M ERNVVSWT +ISA   +    +A  L   ML E    PN +T  A+L AC +   
Sbjct: 83  FSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRD 142

Query: 188 LIILRQLHCGIIKVGFESD----VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
           L I R +H  I ++G E +      V +A+I++YAK G   +A  VF  +P +D+V W +
Sbjct: 143 LAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTA 202

Query: 244 IIGGFAQNSDV-DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVL 300
           + G +AQ      +AL +++ M     A +  T  + L ACT    L  GT +H  +H  
Sbjct: 203 MAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTS---LRDGTWLHSLLHEA 259

Query: 301 KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEAL 357
               D +  NAL++MY KCG  E A  VF  M  +   D++SW+ MIS   + G   +A+
Sbjct: 260 GLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAM 319

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG--IDPGREH----Y 411
            +F  +++  ++PN +T++ +L A + +G        F + +KF+G   + G        
Sbjct: 320 AIFRRLRLEGMRPNSVTLITILNALAASGV------DFGAARKFHGRIWESGYLRDVVVG 373

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL--NL 469
           + +I +  + G    A  +   + ++ D ++W  +LGA +  ++    +     +L   +
Sbjct: 374 NAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGI 433

Query: 470 DPQDPGTYILLSNIYANSQKWD 491
           DP    ++I + N  +NS+  D
Sbjct: 434 DPNKV-SFIAILNACSNSEALD 454



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 215/414 (51%), Gaps = 8/414 (1%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE-PETF 110
           ++   + +   H M   G+  + V++  ++  C    A++  + +H+ +L+   +  E+ 
Sbjct: 415 RKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESS 474

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQM--PERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
           +  +L++M+ K   + EA+++F +M  P R++V+W  M+ AY     + +A   L+ ML+
Sbjct: 475 VATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQ 534

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
            GV P+  ++++VL +C      + L   I++ G+ S   + +ALI ++ +  EL  A  
Sbjct: 535 GGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRS-ACLETALISMHGRCRELEQARS 593

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           VF+EM   D+V W +++   A+N D  E  +L++RM+  G   D+ TL + L  C     
Sbjct: 594 VFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTT 653

Query: 289 LELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           L LG  +H  V  +  + D+ + NALL+MY  CG   +A+S F  M  +D++SW+ M + 
Sbjct: 654 LGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAA 713

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
            AQ G ++EA+ LF  M++  +KP+ +T    L     +  V DG   F  +    G+D 
Sbjct: 714 YAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDG-KLFHGLAAESGLDS 772

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
                + ++ L  + GKL EA+ L      +   V   A++GA   H  ++ A+
Sbjct: 773 DVSVATGLVKLYAKCGKLDEAISLFRG-ACQWTVVLLNAIIGALAQHGFSEEAV 825



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 165/344 (47%), Gaps = 32/344 (9%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVE--EAKLVHNHVLSGGFEPETFLVNIL 115
           AM     ++  G+R +SVT   ++   LA   V+   A+  H  +   G+  +  + N +
Sbjct: 318 AMAIFRRLRLEGMRPNSVTLITILNA-LAASGVDFGAARKFHGRIWESGYLRDVVVGNAI 376

Query: 116 LNMHVKFSLLEEAQVLFDQMPER-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           ++M+ K      A  +F ++  + +V+SW TM+ A  D K   K +     ML  G+ PN
Sbjct: 377 ISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPN 436

Query: 175 MFTYSAVLRAC---DSLIILRQLHCGII---KVGFESDVFVRSALIDIYAKLGELRNAEC 228
             ++ A+L AC   ++L   R++H  I+   +   ES V   + L+ +Y K G +  AE 
Sbjct: 437 KVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSV--ATMLVSMYGKCGSIAEAEL 494

Query: 229 VFNEMP--TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC--- 283
           VF EMP  +R LV WN ++G +AQN    EA      M + G   D  + TSVL +C   
Sbjct: 495 VFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCS 554

Query: 284 -----TGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
                  + +LE G +             L  AL+ M+ +C  LE A SVF  M   DV+
Sbjct: 555 QEAQVLRMCILESGYR----------SACLETALISMHGRCRELEQARSVFDEMDHGDVV 604

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
           SW+ M+S  A+N   +E   LF  M++  + P+  T+   L  C
Sbjct: 605 SWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTC 648



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 143/301 (47%), Gaps = 7/301 (2%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111
            RD          MQ  GV  D  T A  +  CL    +   K++H  V   G E +  +
Sbjct: 616 NRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAV 675

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV 171
            N LLNM+       EA   F+ M  R++VSW  M +AY  A +  +A+ L   M  EGV
Sbjct: 676 ENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGV 735

Query: 172 RPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
           +P+  T+S  L       ++   +  H    + G +SDV V + L+ +YAK G+L  A  
Sbjct: 736 KPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAIS 795

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           +F       +V+ N+IIG  AQ+   +EA+ ++ +M++ G   D +TL S++ AC    +
Sbjct: 796 LFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGM 855

Query: 289 LELGTQVHVHVLKY---DHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMI 344
           +E G    + + +Y      L      +D+  + G LE A  +  +M  + + + W++++
Sbjct: 856 VEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLL 915

Query: 345 S 345
            
Sbjct: 916 G 916


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/575 (38%), Positives = 337/575 (58%), Gaps = 11/575 (1%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQ 134
           +  L+K C    ++EE K VH H+L  G   ++F  + L+      ++  +E A  +F Q
Sbjct: 34  WLSLLKRC---KSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQ 90

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR-- 192
           + E     + TMI    ++   ++AL L + ML  G+ P+ FTY  VL+AC  L+ L+  
Sbjct: 91  IEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEG 150

Query: 193 -QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
            Q+H  + K G E DVFV++ LI +Y K G + +A  VF +M  + +  W+SIIG  A  
Sbjct: 151 VQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASV 210

Query: 252 SDVDEALNLYKRMKRAG-FAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--IL 308
               E L L   M   G   A++S L S L ACT L    LG  +H  +L+   +L  ++
Sbjct: 211 EMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVV 270

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
             +L+DMY KCGSLE  + VF  M  K+  S++ MI+GLA +G  +EA+++F  M    +
Sbjct: 271 KTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGL 330

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
            P+ +  VGVL ACSHAG V +G   F  M+  + I P  +HY CM+DL+GRAG L+EA 
Sbjct: 331 TPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAY 390

Query: 429 KLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
            LI  MP +P+ V WR+LL ACKVH N ++   AA+ I  L+  +PG Y++L+N+YA ++
Sbjct: 391 DLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLANMYARAK 450

Query: 489 KWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLV 548
           KW  VA +R  M  + + + PG S +E N+ ++ F   D S P  + I   ++ +  +L 
Sbjct: 451 KWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQQMEWQLK 510

Query: 549 GVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHT 608
             GY PD + VL D++ ++K   +++HS+KLAI F L+  ++G  IRI +NLR+C DCHT
Sbjct: 511 FEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPIRISRNLRMCNDCHT 570

Query: 609 FAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + K  + +  + I +RD  R+HHF+DG CSC DYW
Sbjct: 571 YTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/561 (38%), Positives = 331/561 (59%), Gaps = 18/561 (3%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNM---HVKFSLLEEAQVLFDQMPERNVVSWTT 145
            ++E K +  + +   ++  T ++   +N    +   + +E A  LFDQ+ + N+V + T
Sbjct: 38  TLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQITQPNIVLFNT 97

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFES 205
           M   Y  A++ND     +I   R  +R        ++    +L   +QLHC  +K+G   
Sbjct: 98  MARGY--ARLNDPLR--MITHFRRCLR--------LVSKVKALAEGKQLHCFAVKLGVSD 145

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           +++V   LI++Y   G++  +  VF+++    +V +N+II   A+N+  +EAL L++ ++
Sbjct: 146 NMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQ 205

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD--LILNNALLDMYCKCGSLE 323
             G      T+  VL +C  L  L+LG  +H +V KY  D  + +N  L+DMY KCGSL+
Sbjct: 206 EIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLD 265

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
           DA++VF  M ++D  +WS +I   A +G   +A+ +   MK  +++P+ IT +G+L+ACS
Sbjct: 266 DAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACS 325

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
           H G VE+G+ +F  M   YGI P  +HY CM+DLLGRAG+L EA K I E+P +P  + W
Sbjct: 326 HNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILW 385

Query: 444 RALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503
           R LL AC  H N ++     ++I  LD    G Y++ SN+ A   KWD+V  +RKTM  +
Sbjct: 386 RTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDK 445

Query: 504 GITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVL-QD 562
           G  K PGCS IEVN  +H F   +  H     +++ L  L+++L   GY PDT+ V   D
Sbjct: 446 GAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDELVKELKSAGYVPDTSLVFYAD 505

Query: 563 LEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIV 622
           +E E+KE  ++YHSEKLAI FGL++   G TIR+ KNLR+CGDCH  AK  + +  + I+
Sbjct: 506 MEDEEKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQII 565

Query: 623 IRDPIRYHHFQDGNCSCGDYW 643
           +RD  R+HHF+DG CSCGDYW
Sbjct: 566 LRDVQRFHHFKDGKCSCGDYW 586



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 103/220 (46%), Gaps = 21/220 (9%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     +Q  G++   VT   ++  C    +++  + +H +V   GF+    +   L++
Sbjct: 197 ALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLID 256

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L++A  +F  MP+R+  +W+ +I AY       +A+ +L  M +E V+P+  T
Sbjct: 257 MYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEIT 316

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFE------------SDVFVRSALIDIYAKLGELRN 225
           +  +L AC         H G+++ GFE              +     ++D+  + G L  
Sbjct: 317 FLGILYACS--------HNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDE 368

Query: 226 AECVFNEMPTRDL-VVWNSIIGGFAQNSDVDEALNLYKRM 264
           A    +E+P +   ++W +++   + + +V+    + +R+
Sbjct: 369 AYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERI 408


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/506 (40%), Positives = 307/506 (60%), Gaps = 38/506 (7%)

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           + F    +++ + +  +LEEA+ +FD MPERN VSW  M++AY   +M D+A EL   M 
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMM- 312

Query: 168 REGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
                            C ++     +  G                   YA+ G L  A+
Sbjct: 313 ----------------PCRNVASWNTMLTG-------------------YAQAGMLEEAK 337

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            VF+ MP +D V W +++  ++Q    +E L L+  M R G   ++S    VL  C  +A
Sbjct: 338 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIA 397

Query: 288 LLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
            LE G Q+H  +++  Y     + NALL MY KCG++EDA + F  M ++DV+SW+TMI+
Sbjct: 398 ALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIA 457

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           G A++G+ +EAL++F+ M+ +  KP+ IT+VGVL ACSH+G VE G ++F SM   +G+ 
Sbjct: 458 GYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVT 517

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
              EHY+CMIDLLGRAG+L EA  L+ +MP+EPD+  W ALLGA ++HRN +L   AA+K
Sbjct: 518 AKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEK 577

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
           I  L+P++ G Y+LLSNIYA+S KW +  ++R  M  RG+ K PG SWIEV  ++H F+ 
Sbjct: 578 IFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSA 637

Query: 526 ADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGL 585
            D  HP+ +KI   L+ L  ++   GY   T+ VL D+E E+KE  ++YHSEKLA+ +G+
Sbjct: 638 GDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGI 697

Query: 586 MSLTQGKTIRIRKNLRICGDCHTFAK 611
           +++  G+ IR+ KNLR+CGDCH   K
Sbjct: 698 LNIPPGRPIRVIKNLRVCGDCHNAFK 723



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 120/484 (24%), Positives = 206/484 (42%), Gaps = 76/484 (15%)

Query: 16  SQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSV 75
           S ARQ S    PP A+ +  + +SS  L+           P  +++  A+  H +RA  V
Sbjct: 9   SAARQRSHR--PPPAAGDASSSSSSGRLE-----------PEVIRSNKAITAH-MRAGRV 54

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGF----------------EPETFLVNILLNMH 119
             AE +   + R +       +N +L+G                   P+ +  N LL+  
Sbjct: 55  ADAERLFAAMPRRSTS----TYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHAL 110

Query: 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
              S L +A+ LFD+MP R+ V++  MIS++     N   + L           +  +++
Sbjct: 111 AVSSSLADARGLFDEMPVRDSVTYNVMISSHA----NHGLVSLARHYFDLAPEKDAVSWN 166

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
            +L A      + +   G+     E DV   +AL+  Y + G++  A  +F+ MP RD+V
Sbjct: 167 GMLAAYVRNGRVEEAR-GLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVV 225

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV---- 295
            WN ++ G+A+  D+ EA  L+     A    D  T T+V+       +LE   +V    
Sbjct: 226 SWNIMVSGYARRGDMVEARRLFD----AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM 281

Query: 296 --------HVHVLKYDHDLILN-----------------NALLDMYCKCGSLEDAMSVFS 330
                   +  V  Y    +++                 N +L  Y + G LE+A +VF 
Sbjct: 282 PERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD 341

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            M QKD +SW+ M++  +Q G S+E L+LF  M       N      VL  C+    +E 
Sbjct: 342 TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALEC 401

Query: 391 GWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           G   H + ++  YG+  G    + ++ +  + G +++A     EM  E D V+W  ++  
Sbjct: 402 GMQLHGRLIRAGYGV--GCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAG 458

Query: 450 CKVH 453
              H
Sbjct: 459 YARH 462



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 21/184 (11%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
            +A ++  C    A+E    +H  ++  G+    F+ N LL M+ K   +E+A+  F++M
Sbjct: 385 AFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEM 444

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLH 195
            ER+VVSW TMI+ Y       +ALE+   M     +P+  T   VL AC         H
Sbjct: 445 EERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACS--------H 496

Query: 196 CGIIKVGFE------SDVFVRSA------LIDIYAKLGELRNAECVFNEMPTR-DLVVWN 242
            G+++ G         D  V +       +ID+  + G L  A  +  +MP   D  +W 
Sbjct: 497 SGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWG 556

Query: 243 SIIG 246
           +++G
Sbjct: 557 ALLG 560


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/591 (36%), Positives = 344/591 (58%), Gaps = 12/591 (2%)

Query: 58   AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            A  A+  M   GV  D++++  ++  C   +  +EA+++   +L  G+     L   L++
Sbjct: 525  AFGALMEMLQGGVLPDALSFTSVLSSC---YCSQEAQVLRMCILESGYRSAC-LETALIS 580

Query: 118  MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            MH +   LE+A+ +F++M   +VVSWT M+SA  + +   +   L   M  EGV P+ FT
Sbjct: 581  MHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFT 640

Query: 178  YSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             +  L  C    +L + + +H  + ++G E+D+ V +AL+++Y+  G+ R A   F  M 
Sbjct: 641  LATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMK 700

Query: 235  TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             RDLV WN +   +AQ     EA+ L+++M+  G   D+ T ++ L    G AL+  G  
Sbjct: 701  ARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKL 760

Query: 295  VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
             H    +   D D+ +   L+ +Y KCG L++AMS+F       V+  + +I  LAQ+G+
Sbjct: 761  FHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGF 820

Query: 353  SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            S+EA+K+F  M+   ++P+  T+V ++ AC HAG VE+G + F +MK+++GI P  EHY+
Sbjct: 821  SEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYA 880

Query: 413  CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
            C +DLLGRAG+L+ A ++I +MP+E + + W +LLG CK+  + +L    A++IL LDP 
Sbjct: 881  CFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPH 940

Query: 473  DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
            +   +++LSNIY  + KW +    RK M    +   PG SW E+ KQ+H F   D SHP+
Sbjct: 941  NSAAHVVLSNIYCATGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPK 1000

Query: 533  IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
             D+I   L  L   +   GY  D      D+E E KE ++ YHSE++AI FGL++     
Sbjct: 1001 TDEIYVVLDKLELLMRRAGYEADKGL---DVEDELKEKALGYHSERIAIAFGLIATPPET 1057

Query: 593  TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            T++I KNLR+CGDCHT  K  + +  + I++RD +R+HHF +G CSC D W
Sbjct: 1058 TLKIVKNLRVCGDCHTATKYISMVMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/442 (30%), Positives = 224/442 (50%), Gaps = 32/442 (7%)

Query: 72  ADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVL 131
           AD   Y  L++ C+  + + + K  H  + + G E   FL N L+NM+V+   LEEA  +
Sbjct: 23  ADLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAI 82

Query: 132 FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNMFTYSAVLRACDS--- 187
           F +M ERNVVSWT +ISA        +A  L   ML E    PN +T  A+L AC +   
Sbjct: 83  FSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRD 142

Query: 188 LIILRQLHCGIIKVGFE----SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
           L I R +H  I ++G E    +   V +A+I++YAK G L +A  VF  +P +D+V W +
Sbjct: 143 LAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTA 202

Query: 244 IIGGFAQNSDV-DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVL 300
           + G +AQ      +AL +++ M     A +  T  + L ACT    L  GT +H  +H  
Sbjct: 203 MAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTS---LRDGTWLHSLLHEA 259

Query: 301 KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEAL 357
               D + +NAL++MY KCG  E A SVF  M  +   D++SW+ MIS   + G   +A+
Sbjct: 260 SLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAM 319

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG--IDPGREH----Y 411
            +F  +++  ++PN +T++ +L A + +G        F + + F+G   + G        
Sbjct: 320 AIFRRLRLEGMRPNSVTLITILNALAASGV------DFGAARGFHGRIWESGYLRDVVIG 373

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL--NL 469
           + +I +  + G    A  +   + ++ D ++W  +LGA +  ++    +     +L   +
Sbjct: 374 NAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGI 433

Query: 470 DPQDPGTYILLSNIYANSQKWD 491
           DP    ++I + N  +NS+  D
Sbjct: 434 DPNKV-SFIAILNACSNSEALD 454



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/414 (28%), Positives = 216/414 (52%), Gaps = 8/414 (1%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE-PETF 110
           ++   + +   H M   G+  + V++  ++  C    A++  + +H+ +L+   +  E+ 
Sbjct: 415 RKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESS 474

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQM--PERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
           +  +L++M+ K   + EA+++F +M  P R++V+W  M+ AY     + +A   L+ ML+
Sbjct: 475 VATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQ 534

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
            GV P+  ++++VL +C      + L   I++ G+ S   + +ALI ++ +  EL  A  
Sbjct: 535 GGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRS-ACLETALISMHGRCRELEQARS 593

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           VFNEM   D+V W +++   A+N D  E  NL++RM+  G   D+ TL + L  C     
Sbjct: 594 VFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTT 653

Query: 289 LELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           L LG  +H  V  +  + D+ + NALL+MY  CG   +A+S F  M  +D++SW+ M + 
Sbjct: 654 LGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAA 713

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
            AQ G ++EA+ LF  M++  +KP+ +T    L     +  V DG   F ++    G+D 
Sbjct: 714 YAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDG-KLFHALAAESGLDS 772

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
                + ++ L  + GKL EA+ L      +   V   A++GA   H  ++ A+
Sbjct: 773 DVSVATGLVKLYAKCGKLDEAMSLFRG-ACDWTVVLLNAIIGALAQHGFSEEAV 825



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 135/491 (27%), Positives = 212/491 (43%), Gaps = 72/491 (14%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVE--EAKLVHNHVLSGGFEPETFLVNIL 115
           AM     ++  G+R +SVT   ++   LA   V+   A+  H  +   G+  +  + N +
Sbjct: 318 AMAIFRRLRLEGMRPNSVTLITILNA-LAASGVDFGAARGFHGRIWESGYLRDVVIGNAI 376

Query: 116 LNMHVKFSLLEEAQVLFDQMPER-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           ++M+ K      A  +F ++  + +V+SW TM+ A  D K   K +     ML  G+ PN
Sbjct: 377 ISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPN 436

Query: 175 MFTYSAVLRAC---DSLIILRQLHCGII---KVGFESDVFVRSALIDIYAKLGELRNAEC 228
             ++ A+L AC   ++L   R++H  I+   +   ES V   + L+ +Y K G +  AE 
Sbjct: 437 KVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSV--ATMLVSMYGKCGSISEAEL 494

Query: 229 VFNEMP--TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC--- 283
           VF EMP  +R LV WN ++G +AQN    EA      M + G   D  + TSVL +C   
Sbjct: 495 VFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCS 554

Query: 284 -----TGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
                  + +LE G +             L  AL+ M+ +C  LE A SVF+ M   DV+
Sbjct: 555 QEAQVLRMCILESGYR----------SACLETALISMHGRCRELEQARSVFNEMDHGDVV 604

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC-----------SHAGF 387
           SW+ M+S  A+N   +E   LF  M++  + P+  T+   L  C            HA  
Sbjct: 605 SWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHACV 664

Query: 388 VEDGW-----------------NHFKSMKKFYGIDPGRE--HYSCMIDLLGRAGKLQEAV 428
            E G                    ++    F+     R+   ++ M     +AG  +EAV
Sbjct: 665 TEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAV 724

Query: 429 KLIHEMPYE---PDAVTWRALL----GACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
            L  +M  E   PD +T+   L    G+  V         AA+  L+    D      L 
Sbjct: 725 LLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLD---SDVSVATGLV 781

Query: 482 NIYANSQKWDE 492
            +YA   K DE
Sbjct: 782 KLYAKCGKLDE 792



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 144/300 (48%), Gaps = 7/300 (2%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111
            RD          MQ  GV  D  T A  +  CLA   +   K++H  V   G E +  +
Sbjct: 616 NRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAV 675

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV 171
            N LLNM+       EA   F+ M  R++VSW  M +AY  A +  +A+ L   M  EGV
Sbjct: 676 ENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGV 735

Query: 172 RPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
           +P+  T+S  L       ++   +  H    + G +SDV V + L+ +YAK G+L  A  
Sbjct: 736 KPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMS 795

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           +F       +V+ N+IIG  AQ+   +EA+ ++ +M++ G   D +TL S++ AC    +
Sbjct: 796 LFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGM 855

Query: 289 LELGTQVHVHVLKY---DHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMI 344
           +E G    + + +Y      L      +D+  + G LE A  +  +M  + + + W++++
Sbjct: 856 VEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLL 915


>gi|218193985|gb|EEC76412.1| hypothetical protein OsI_14066 [Oryza sativa Indica Group]
          Length = 628

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/508 (41%), Positives = 309/508 (60%), Gaps = 5/508 (0%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           NIL   ++K   L  A+ LFD+MPERNV +W  M++   +   ++++L L + M REG+ 
Sbjct: 111 NILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGLFLDMRREGMH 170

Query: 173 PNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P+ F   +V R C  L   +  RQ+H  +++ G + D+ V S+L  +Y + G L+  E V
Sbjct: 171 PDEFGLGSVSRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAV 230

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
              +P+  +V  N+II G  QN D + AL  +  M+  G AAD  T  S + +C+ LA L
Sbjct: 231 LRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAAL 290

Query: 290 ELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
             G Q+H  V+K   D ++     L+ MY +CG L D+  VF      D    S MIS  
Sbjct: 291 AQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAY 350

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
             +G+ Q+A++LF+ M     +P+ +T + +L+ACSH+G  E+G + F+ M K YGI P 
Sbjct: 351 GFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGIQPS 410

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            +HY+C++DLLGR+G L EA  LI  MP  PD V W+ LL ACK  +N D+A   AK+++
Sbjct: 411 VKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVI 470

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
            LDP D  +Y+LLSNI A S++W +V+EVRK MR   + KEPG SW+E+   IH F   D
Sbjct: 471 ELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGD 530

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
            SHP+  +I++ L+ ++ K+   GY+PD + VL D+E E+KE S+ +HSEKLAI F  +S
Sbjct: 531 ESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLS 590

Query: 588 LTQGKTIRIRKNLRICGDCHTFAKLTAK 615
           L +G  IR+ KNLR+C DCH   KL ++
Sbjct: 591 LPEGVPIRVMKNLRVCDDCHLAIKLMSQ 618



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 163/345 (47%), Gaps = 38/345 (11%)

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           +S + RAC +L  LRQLH      G  +D F  + L+  YA LG+L  A  +F  +P R+
Sbjct: 47  FSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRN 106

Query: 238 LVVWNSIIGGFAQNSDV-------------------------------DEALNLYKRMKR 266
           ++ WN + GG+ +N D+                               +E+L L+  M+R
Sbjct: 107 VMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGLFLDMRR 166

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLED 324
            G   D+  L SV R C GL  +  G QVH +V++   D D+ + ++L  MY +CG L++
Sbjct: 167 EGMHPDEFGLGSVSRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQE 226

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
             +V   +    ++S +T+I+G  QNG S+ AL+ F  M+   +  + +T V  + +CS 
Sbjct: 227 GEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSD 286

Query: 385 AGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
              +  G   H + MK   G+D      +C++ +  R G L ++ ++        D    
Sbjct: 287 LAALAQGQQIHGQVMKA--GVDKVVPVMTCLVHMYSRCGCLGDSERVFFGY-CGSDTFLL 343

Query: 444 RALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
            A++ A   H +   AI   K+++N    +P     L+ +YA S 
Sbjct: 344 SAMISAYGFHGHGQKAIELFKQMMN-GGAEPSDVTFLALLYACSH 387



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 15/241 (6%)

Query: 29  VASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARH 88
           + SCNTI    +             D   A++    M+  GV AD VT+   I  C    
Sbjct: 239 IVSCNTIIAGRTQ----------NGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLA 288

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           A+ + + +H  V+  G +    ++  L++M+ +   L +++ +F      +    + MIS
Sbjct: 289 ALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMIS 348

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD-SLIILRQLHCGIIKV---GFE 204
           AY       KA+EL   M+  G  P+  T+ A+L AC  S +    + C  +     G +
Sbjct: 349 AYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGIQ 408

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMP-TRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
             V   + ++D+  + G L  AE +   MP T D V+W +++       + D A  + KR
Sbjct: 409 PSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKR 468

Query: 264 M 264
           +
Sbjct: 469 V 469


>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
          Length = 977

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/483 (42%), Positives = 309/483 (63%), Gaps = 17/483 (3%)

Query: 166 MLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           ML  GVRP+   + +  +AC  L    I + +H   +K G++ DVFV S+++D+YAK GE
Sbjct: 1   MLDNGVRPDDHIFPSATKACGILSRCDIGQSVHSFAVKTGYDCDVFVGSSMVDMYAKCGE 60

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           + +A  +F+EMP R++V W+ +I G++Q  + +EAL L+K+        +  T +SV+R 
Sbjct: 61  IGDARKMFDEMPDRNVVSWSGMIYGYSQMGEDEEALRLFKQALIEDLDVNDFTFSSVVRV 120

Query: 283 CTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           C    LLELG Q+H   LK  YD    + ++L+ +Y KCG +EDA  VF  +  +++  W
Sbjct: 121 CGNSTLLELGKQIHGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHEIPIRNLGMW 180

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           + M+   AQ+ ++++A  LF+ M+   +KPN+IT + VL+ACSHAG VE G  +F+ MK+
Sbjct: 181 NAMLIACAQHAHTEKAFDLFKQMEGVGMKPNFITFLCVLYACSHAGLVEKGQFYFELMKE 240

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            YGI+PG +HY+ M+DLLGRAGKL++AV +I +MP EP    W ALL  C++H +T+LA 
Sbjct: 241 -YGIEPGAQHYASMVDLLGRAGKLKDAVSIIKKMPMEPTESVWGALLTGCRIHGDTELAS 299

Query: 461 CAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQI 520
             A ++  L P           + + + +++E A  RK +R +G+ KE G SW+E   +I
Sbjct: 300 FVADRVFELGP-----------VSSAAGRYEEAARARKMLRDQGVKKETGLSWVEEGNRI 348

Query: 521 HAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLA 580
           H F   D SHP    I K L+ L +++   GY  DT++VLQ+++GE+K  +I+YHSE+LA
Sbjct: 349 HTFAAGDRSHPYTKDIYKKLEELGEEMERAGYIADTSFVLQEVDGEEKNQTIRYHSERLA 408

Query: 581 IVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
           I FGL+S    + IR+ KNLR+CGDCHT  K  +K   +TI++RD  R+H F+DGNCSC 
Sbjct: 409 IAFGLISFPPERPIRVMKNLRVCGDCHTAIKFMSKCCGRTIIVRDNNRFHRFEDGNCSCR 468

Query: 641 DYW 643
           DYW
Sbjct: 469 DYW 471



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 177/316 (56%), Gaps = 12/316 (3%)

Query: 68  HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           +GVR D   +    K C      +  + VH+  +  G++ + F+ + +++M+ K   + +
Sbjct: 4   NGVRPDDHIFPSATKACGILSRCDIGQSVHSFAVKTGYDCDVFVGSSMVDMYAKCGEIGD 63

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A+ +FD+MP+RNVVSW+ MI  Y     +++AL L    L E +  N FT+S+V+R C +
Sbjct: 64  ARKMFDEMPDRNVVSWSGMIYGYSQMGEDEEALRLFKQALIEDLDVNDFTFSSVVRVCGN 123

Query: 188 LIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
             +L   +Q+H   +K  ++S  FV S+LI +Y+K G + +A  VF+E+P R+L +WN++
Sbjct: 124 STLLELGKQIHGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHEIPIRNLGMWNAM 183

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YD 303
           +   AQ++  ++A +L+K+M+  G   +  T   VL AC+   L+E G Q +  ++K Y 
Sbjct: 184 LIACAQHAHTEKAFDLFKQMEGVGMKPNFITFLCVLYACSHAGLVEKG-QFYFELMKEYG 242

Query: 304 HDLILNN--ALLDMYCKCGSLEDAMSVFSRMIQKDVIS-WSTMISGLAQNGYSQEAL--- 357
            +    +  +++D+  + G L+DA+S+  +M  +   S W  +++G   +G ++ A    
Sbjct: 243 IEPGAQHYASMVDLLGRAGKLKDAVSIIKKMPMEPTESVWGALLTGCRIHGDTELASFVA 302

Query: 358 -KLFESMKVSRIKPNY 372
            ++FE   VS     Y
Sbjct: 303 DRVFELGPVSSAAGRY 318


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/603 (36%), Positives = 344/603 (57%), Gaps = 29/603 (4%)

Query: 50  CYQRD--LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLS--GGF 105
           CY R      A++ +  MQ  GV+   V    LI        ++  + VH +++   G  
Sbjct: 163 CYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDE 222

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           + E  +   L++M+ K   L  AQ LFD++ +R+VVSWT MI+    +   D+  +    
Sbjct: 223 KMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNR 282

Query: 166 MLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           ML E + PN  T  +++  C    +L + +  H  +++ GF   + + +ALID+Y K G+
Sbjct: 283 MLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQ 342

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           +  A  +FN +  +D+ +W+ +I  +A  S +D+  NL+  M       +  T+ S+L  
Sbjct: 343 VGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSL 402

Query: 283 CTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340
           C     L+LG   H ++ ++  + D+IL  AL++MY KCG +  A S+F+  +Q+D+  W
Sbjct: 403 CAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMW 462

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           +TM++G + +G  +EAL+LF  M+   ++PN IT V +  ACSH+G +E           
Sbjct: 463 NTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGLME----------- 511

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
                    HY C++DLLGRAG L EA  +I  MP  P+ + W ALL ACK+H+N  L  
Sbjct: 512 ---------HYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGE 562

Query: 461 CAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQI 520
            AA+KIL LDPQ+ G  +L SNIYA++++W++V  VR+ M   G+ KEPG SWIEV+  +
Sbjct: 563 VAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSV 622

Query: 521 HAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLA 580
           H F   D +  Q  K+ + +  +  KL   GY P+T  VL +++ E+KE ++ YHSEKLA
Sbjct: 623 HHFKSGDKACTQTTKVYEMVTEMCIKLRESGYTPNTAAVLLNIDEEEKESALSYHSEKLA 682

Query: 581 IVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
             FGL+S   G  IRI KNLRIC DCH   KL +K+  +TI++RD  R+HHF +G CSC 
Sbjct: 683 TAFGLISTAPGTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCM 742

Query: 641 DYW 643
            YW
Sbjct: 743 GYW 745



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/389 (30%), Positives = 202/389 (51%), Gaps = 11/389 (2%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D+     L+K C    + +  + +H      GF  + F+ N L+NM+ K   L  A+++F
Sbjct: 87  DNFILPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVF 146

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL- 191
           DQMPER+VVSWTTM+  Y  +K   +AL L+  M   GV+ +     +++    +L+ + 
Sbjct: 147 DQMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMK 206

Query: 192 --RQLHCGIIK-VGFES-DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
             R +H  I++ VG E  +V + +ALID+Y K G L +A+ +F+ +  R +V W  +I G
Sbjct: 207 SGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAG 266

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHD 305
             ++  +DE    + RM       ++ TL S++  C  +  L+LG   H ++L+  +   
Sbjct: 267 CIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMS 326

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           L L  AL+DMY KCG +  A ++F+ + +KDV  WS +IS  A      +   LF  M  
Sbjct: 327 LALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLN 386

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
           + +KPN +T+V +L  C+ AG ++ G W H    +    +D   E  + +I++  + G +
Sbjct: 387 NDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILE--TALINMYAKCGDV 444

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVH 453
             A  L +E   + D   W  ++    +H
Sbjct: 445 TIARSLFNE-AMQRDIRMWNTMMAGFSMH 472


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/588 (38%), Positives = 337/588 (57%), Gaps = 33/588 (5%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M   G   D  TY  ++K      ++     +H  VL  G +   ++ N L+ 
Sbjct: 104 ALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIA 163

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L+EAQ + D++P R+VVSW +M+S Y      + ALEL   M    ++PN  T
Sbjct: 164 MYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCT 223

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
            +++L A             +     ++ ++V+                  +F ++  + 
Sbjct: 224 MASLLPA-------------VTNTTSDNVLYVKE-----------------MFLKLTKKS 253

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH- 296
           ++ WN +I  +  NS   EA+ LY +M+  G   D  ++ SVL A   L+ L LG +VH 
Sbjct: 254 VISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHK 313

Query: 297 -VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
                K   +L+L NAL+DMY KCG L DA +VF++M  +DV+SW+++IS   + G  ++
Sbjct: 314 FAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRD 373

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           A+ +F  M+ S + P+ I  V VL ACSHAG ++DG  +F  M +  GI P  EH++C++
Sbjct: 374 AVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAEC-GITPKLEHFACVV 432

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           DLLGRAGK+ EA   I +MP EPD   W  LL AC+V+ N ++ I AA K+L L+P+  G
Sbjct: 433 DLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSG 492

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
            Y+LLSNIYA + +W +VA +R  M  +GI K PG S +E+N  +H F   D SHPQ  K
Sbjct: 493 YYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKK 552

Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
           I + L  L+ K+  +GY P+T+  L D+E E KE  +  HSEKLA+ F +++   G  IR
Sbjct: 553 IYEELDVLVGKMKELGYMPETDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKPGTPIR 612

Query: 596 IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + KNLR+CGDCH  AKL +K+  + I+IRD  R+HHFQ+G CSCGDYW
Sbjct: 613 VTKNLRVCGDCHVAAKLISKIAEREIIIRDTHRFHHFQEGCCSCGDYW 660



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 179/352 (50%), Gaps = 44/352 (12%)

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC-- 185
           A+ +FD++ ++NVV +  MI +Y +  +   AL +   M  +G  P+M+TY  VL+A   
Sbjct: 73  ARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSR 132

Query: 186 -DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
            DSL +  Q+H  ++K+G + +++V + LI +Y K   L+ A+ V +E+P RD+V WNS+
Sbjct: 133 SDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSM 192

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
           +  +AQN   ++AL L + M+      +  T+ S+L A T                    
Sbjct: 193 VSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVT-------------------- 232

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           +   +N L   Y K         +F ++ +K VISW+ MI+    N   +EA+ L+  M+
Sbjct: 233 NTTSDNVL---YVK--------EMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQME 281

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGW--NHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
            + ++P+ ++IV VL A      +  G   + F   KK     P     + +ID+  + G
Sbjct: 282 ANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLL---PNLLLENALIDMYAKCG 338

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALL---GACKVHRNTDLAICAAKKILNLDP 471
            L++A  + ++M +  D V+W +++   G C   R+  +A+ A  +   L+P
Sbjct: 339 CLRDARAVFNQMQFR-DVVSWTSIISAYGKCGQGRDA-VAVFAEMRNSGLNP 388



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 126/243 (51%), Gaps = 10/243 (4%)

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           L+ +YA  GE   A  +F+E+  +++V +N +I  +  N    +AL +YK M   GF  D
Sbjct: 60  LMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPD 119

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFS 330
             T   VL+A +    L +G Q+H  VLK   D +L + N L+ MY KC SL++A  V  
Sbjct: 120 MYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLD 179

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            +  +DV+SW++M+S  AQNG   +AL+L   M+   +KPN  T+  +L A ++     D
Sbjct: 180 EIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNT--TSD 237

Query: 391 GWNHFKSMKKFYGIDPGRE-HYSCMIDLLGRAGKLQEAVKLIHEMP---YEPDAVTWRAL 446
              + K M  F  +       ++ MI +       +EAV L  +M     EPD V+  ++
Sbjct: 238 NVLYVKEM--FLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSV 295

Query: 447 LGA 449
           L A
Sbjct: 296 LPA 298


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/646 (34%), Positives = 362/646 (56%), Gaps = 10/646 (1%)

Query: 2   ILKAVSKLKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKA 61
           IL +     + +    A   S   T P +  +    N+  LL   +R     +  R  +A
Sbjct: 37  ILSSCLATAYARAGDLAAAESTLATAPTSPSSIPAWNA--LLAAHSRGASPHEALRVFRA 94

Query: 62  MHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK 121
           +        R DS T+   +  C     +   ++V +     G+  + F+ + +LN++ K
Sbjct: 95  LPP----AARPDSTTFTLALSACARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAK 150

Query: 122 FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
              +++A  +FD+M +R+ V+W+TM++ + +A    +A+E+ + M R+G+  +      V
Sbjct: 151 CGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGV 210

Query: 182 LRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
           ++AC +    R    +H  +++   + DV + ++L+D+YAK G    A  VF  MP R+ 
Sbjct: 211 MQACAATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRND 270

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           V W+++I   AQ  + DEAL L++ M+ +G   +   +   L AC+ L LL+LG  +H  
Sbjct: 271 VSWSALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGF 330

Query: 299 VLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           +L+  + D ++  A++DMY KCGSL  A  +F +++ +D+ISW+ MI+    +G  ++AL
Sbjct: 331 ILRTLELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDAL 390

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
            LF+ MK + ++P++ T   +L A SH+G VE+G   F  M   YGI+PG +H  C++DL
Sbjct: 391 SLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDL 450

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           L R+G ++EA  L+  +  +P      ALL  C  +   +L    A+KIL L P D G  
Sbjct: 451 LARSGLVEEANGLVASLHSKPTISILVALLSGCLNNNKLELGESTAEKILELQPGDVGVL 510

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
            L+SN+YA ++ W +V EVRK M+  G  K PGCS IE+   +H F + D SHPQ  +I 
Sbjct: 511 ALVSNLYAAAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQIL 570

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
           + +  L  ++  +GY P T +V  DLE   KE  +  HSE+LA  FGL++ + G  + + 
Sbjct: 571 QMVMKLDSEMRKMGYIPKTEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRLVVI 630

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLR+CGDCH   K  +K+ ++ IV+RD  R+HHF+DG CSCGDYW
Sbjct: 631 KNLRVCGDCHDAIKYMSKIADREIVVRDAKRFHHFKDGACSCGDYW 676



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 146/286 (51%), Gaps = 10/286 (3%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFES-DVFVRSALIDIYAKLGELRNAECVFNEMPT--RD 237
           +L +C +L  L +LH  +I     S    + S L   YA+ G+L  AE      PT    
Sbjct: 9   LLSSCAALRTLTRLHALLIVSSSASCHHILSSCLATAYARAGDLAAAESTLATAPTSPSS 68

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV-- 295
           +  WN+++   ++ +   EAL +++ +  A    D +T T  L AC  L  L  G  V  
Sbjct: 69  IPAWNALLAAHSRGASPHEALRVFRALPPAA-RPDSTTFTLALSACARLGDLATGEVVTD 127

Query: 296 HVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
                 Y +D+ + +++L++Y KCG+++DA+ VF RM ++D ++WSTM++G    G   +
Sbjct: 128 RASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQ 187

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCM 414
           A++++  M+   ++ + + IVGV+ AC+  G    G + H   ++    +D      + +
Sbjct: 188 AIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVIS--TSL 245

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           +D+  + G   +A ++   MP+  D V+W AL+     + N D A+
Sbjct: 246 VDMYAKNGLFDQARRVFELMPHRND-VSWSALISQLAQYGNADEAL 290


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/603 (38%), Positives = 340/603 (56%), Gaps = 47/603 (7%)

Query: 48  RFCYQRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           + C + + P +A+   + M     R +  TY  ++K C     V E   VH H++  G  
Sbjct: 110 KVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLG 169

Query: 107 PETFLVNILLNMHVKFSLLEEAQ-VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
            +  +++  + M+  F  L EA+ +L D+  E + V W  MI  Y      + A EL   
Sbjct: 170 GDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELF-- 227

Query: 166 MLREGV--RPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
              EG+  R  + T++A++             CG+++V  E                   
Sbjct: 228 ---EGMPDRSMISTWNAMISGFS--------RCGMVEVARE------------------- 257

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
                 F+EM  RD + W+++I G+ Q     EAL ++ +M++      +  L SVL AC
Sbjct: 258 -----FFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSAC 312

Query: 284 TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
             L  L+ G  +H +  +     D +L  +L+DMY KCG ++ A  VF +M  K+V SW+
Sbjct: 313 ANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWN 372

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
            MI GLA +G +++A+ LF  M    I PN IT VGVL AC+H G V+ G   F SM+K 
Sbjct: 373 AMIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKE 429

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
           YG++P  EHY C++DLLGRAG L EA K++  +P EP    W ALLGAC+ H N +L   
Sbjct: 430 YGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGER 489

Query: 462 AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNK-QI 520
             K +L L+PQ+ G Y LLSNIYA + +W+EV EVRK M+ RGI   PG S I++ + ++
Sbjct: 490 VGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEV 549

Query: 521 HAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLA 580
           H F + D SHPQ+  I + L  + ++L   GY PD + VL D++ E+KE ++  HSEKLA
Sbjct: 550 HKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLA 609

Query: 581 IVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
           I FGL++ + G TIRI KNLR+C DCH+  KL +++ N+ I++RD IRYHHF++G CSC 
Sbjct: 610 IGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCK 669

Query: 641 DYW 643
           D+W
Sbjct: 670 DFW 672



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 157/359 (43%), Gaps = 76/359 (21%)

Query: 187 SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR-----NAECVFNEMPTRDLVVW 241
           SL  L+Q H  I++ G   D ++  +L+  YA +   R     ++  VF+ +   ++ +W
Sbjct: 46  SLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLW 105

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N +I    +N++  +A+ LY  M  A F  ++ T  +VL+AC+   ++  G QVH H++K
Sbjct: 106 NCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVK 165

Query: 302 Y----------------------------------DHDLILNNALLDMY----------- 316
           +                                  + D +  NA++D Y           
Sbjct: 166 HGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARE 225

Query: 317 ---------------------CKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
                                 +CG +E A   F  M ++D ISWS MI G  Q G   E
Sbjct: 226 LFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFME 285

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCM 414
           AL++F  M+  +I+P    +  VL AC++ G ++ G W H  + +    +D      + +
Sbjct: 286 ALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLG--TSL 343

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           +D+  + G++  A ++  +M    +  +W A++G   +H   + AI    K ++++P +
Sbjct: 344 VDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAEDAIDLFSK-MDINPNE 400



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 82/190 (43%), Gaps = 16/190 (8%)

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSL---------- 322
            ST TS L     L LL       +H LK  H LIL    L      GSL          
Sbjct: 23  HSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTN 82

Query: 323 -----EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
                E ++ VF  + + +V  W+ MI    +N    +A+ L+  M V+  +PN  T   
Sbjct: 83  RYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPA 142

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           VL ACS AG V +G      + K +G+       S  I +    G+L EA +++ +   E
Sbjct: 143 VLKACSDAGVVAEGVQVHAHLVK-HGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGE 201

Query: 438 PDAVTWRALL 447
            DAV W A++
Sbjct: 202 VDAVCWNAMI 211


>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
          Length = 641

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/553 (40%), Positives = 343/553 (62%), Gaps = 6/553 (1%)

Query: 69  GVRADSVTYAE-LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           G+RA  V+  + L++      A  E    H  ++  G   +T   N+L+NM+ K  L+E 
Sbjct: 41  GIRATHVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVES 100

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A+ LFD+MP R++VSW TM+ ++     ++KAL L + M +EG+  + FT S+V+ AC +
Sbjct: 101 ARKLFDEMPVRSLVSWNTMVGSHTQNGDSEKALVLFMQMQKEGISCSEFTVSSVVCACAA 160

Query: 188 ---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
              +   +QLH   +K   +S+VFV +AL+D+YAK G +++A  VF  MP R  V W+S+
Sbjct: 161 KCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMPERSDVTWSSM 220

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           + G+ QN   +EAL L+ R +  G   +Q T++S L AC   A L  G QV   + K   
Sbjct: 221 VAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVLCKTGI 280

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
             ++ + ++L+DMY KCG +E+A  VFS + +K+V+ W+ M+SG +++  S EA+  FE 
Sbjct: 281 GSNIFVISSLIDMYAKCGIIEEAYIVFSSVEEKNVVLWNAMLSGFSRHVRSLEAMIYFEK 340

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           M+   I PN IT + VL ACSH G VE G  +F  M + + + P   HYSCM+D+LGRAG
Sbjct: 341 MQQMGICPNEITYISVLTACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAG 400

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
            L EA  LI  MP++  A  W +LL +C+++RN + A  AAK +  ++P + G ++LLSN
Sbjct: 401 LLHEAKDLIDRMPFDATASMWGSLLASCRIYRNLEXAEVAAKHLFEIEPHNAGNHVLLSN 460

Query: 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKH 542
           IYA + +W+EVA  R  ++     KE G SWIE+  ++H+F V + +HP+I +I   L+ 
Sbjct: 461 IYAANNRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLED 520

Query: 543 LIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
           L+ ++  +GY   T + L D+E  +K++ +++HSEKLA+ FG+M L  G  IRI KNLRI
Sbjct: 521 LVGEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRI 580

Query: 603 CGDCHTFAKLTAK 615
           CGDCH+F KL ++
Sbjct: 581 CGDCHSFMKLASR 593



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 156/285 (54%), Gaps = 6/285 (2%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D  +A+     MQ  G+     T + ++  C A+  V E K +H   L    +   F+  
Sbjct: 128 DSEKALVLFMQMQKEGISCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGT 187

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            LL+++ K  L+++A ++F+ MPER+ V+W++M++ Y   ++ ++AL L       G+  
Sbjct: 188 ALLDVYAKCGLVKDASLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEH 247

Query: 174 NMFT---YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           N FT     +   A  +LI  +Q+   + K G  S++FV S+LID+YAK G +  A  VF
Sbjct: 248 NQFTISSALSACAARAALIEGKQVQAVLCKTGIGSNIFVISSLIDMYAKCGIIEEAYIVF 307

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           + +  +++V+WN+++ GF+++    EA+  +++M++ G   ++ T  SVL AC+ L L+E
Sbjct: 308 SSVEEKNVVLWNAMLSGFSRHVRSLEAMIYFEKMQQMGICPNEITYISVLTACSHLGLVE 367

Query: 291 LGTQ---VHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
            G +   + + V     +++  + ++D+  + G L +A  +  RM
Sbjct: 368 KGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDLIDRM 412


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/588 (38%), Positives = 355/588 (60%), Gaps = 13/588 (2%)

Query: 69  GVRADSVTYAELIKCCLARHA--VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLE 126
           G R D VT++ ++       A  +++ + +H +    G  P   +   +++M+ K   L+
Sbjct: 24  GERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLD 83

Query: 127 EAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG--VRPNMFTYSAVLRA 184
           +A+  F+++  +N V+W  M++ Y     + +ALEL   M       RP+ F++S  + A
Sbjct: 84  DARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSRSARPDKFSFSIAIEA 143

Query: 185 CDSLIIL---RQLHCGIIKVGFE--SDVFVRSALIDIYAKLGELRNAECVFNEMP-TRDL 238
           C +L  L   R++H  + + G E   DV V +AL+++Y+K G+L  A  VF+ +    D 
Sbjct: 144 CSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADS 203

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           V WN++I  +AQ+    +AL+LY+ M      A  Q T  +V+  C  L+ L+ G  +H 
Sbjct: 204 VCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHA 263

Query: 298 HV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
            V    +D +L+++NAL+ MY KCG L++A+ VF  M  KD ISW+T+IS  A +G+S +
Sbjct: 264 RVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQ 323

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           AL L++ M +  +KP  +T VG+L ACSH G V DG ++F  M+  + I P   H+ C+I
Sbjct: 324 ALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCII 383

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           DLLGR G+L EA  ++  MP + +AV W +LLGACK H +    + AA ++++  P   G
Sbjct: 384 DLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSG 443

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
            Y+LLSNIYA + +W +V ++RK M ARG+ K PG SWIE+   +H F   D SHPQ ++
Sbjct: 444 GYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDRSHPQGEE 503

Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
           I   L  +++++ G+GY PDT+ V  DLE E+KED +  HSEKLAIV+G M +     +R
Sbjct: 504 IYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLR 563

Query: 596 IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           I KNLR+C DCHT  K  +++  + IV+RD  R+H F++G+CSC DYW
Sbjct: 564 IVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDYW 611



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 161/327 (49%), Gaps = 15/327 (4%)

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL-----RQLHCGIIKV 201
           ++A+     + +AL     M + G RP+  T+S +L A   +        R++H      
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 202 GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLY 261
           G   +V V +A+I +Y K G L +A   F E+  ++ V WN+++  +  +    EAL L+
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 262 KRMKRAGFAA--DQSTLTSVLRACTGLALLELGTQVHVHVLK----YDHDLILNNALLDM 315
           + M     +A  D+ + +  + AC+ L  LE G ++H  + +       D+++  ALL+M
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 316 YCKCGSLEDAMSVFSRMIQK-DVISWSTMISGLAQNGYSQEALKLFESM-KVSRIKPNYI 373
           Y KCG LE+A  VF  +    D + W+ MI+  AQ+G  ++AL L+ SM   + + P   
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQG 240

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
           T V V+  C+    ++ G     +  +    D      + ++ + G+ G L EA+ + H 
Sbjct: 241 TFVTVIDVCAELSALKQG-RAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHS 299

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAI 460
           M  + D ++W  ++ +   H ++D A+
Sbjct: 300 MKLK-DEISWNTIISSYAYHGHSDQAL 325



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 133/272 (48%), Gaps = 19/272 (6%)

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL--RACTGLALLELGTQVH--VHVL 300
           +  F+ N    EAL  ++RM ++G   D+ T + +L   A  G A ++ G ++H    + 
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 301 KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
               ++++  A++ MY KCG L+DA + F  +  K+ ++W+ M++    +G  +EAL+LF
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 361 ESM--KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY------S 412
             M  +    +P+  +    + ACS+   +E G    + +++      G+E +      +
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRR-----EGKELHKDVVVGT 175

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
            ++++  + G L+EA K+   + ++ D+V W A++ A   H     A+   + + +    
Sbjct: 176 ALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDL 235

Query: 473 DP--GTYILLSNIYANSQKWDEVAEVRKTMRA 502
            P  GT++ + ++ A      +   +   +RA
Sbjct: 236 APKQGTFVTVIDVCAELSALKQGRAIHARVRA 267


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/587 (35%), Positives = 361/587 (61%), Gaps = 17/587 (2%)

Query: 72  ADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVL 131
           ++S    +++  C  R  +++ K VH  V   GF+    + N +++M+ K  ++ EA  +
Sbjct: 2   SESRLLNKILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARV 61

Query: 132 FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSL 188
           F+ +P RNV+SW  MI+ Y + +  ++AL L   M  +G  P+ +TYS+ L+AC   D+ 
Sbjct: 62  FNTLPVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAA 121

Query: 189 IILRQLHCGIIKVGFE--SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
               Q+H  +I+ GF   +   V  AL+D+Y K   +  A  VF+ +  + ++ W+++I 
Sbjct: 122 GEGMQIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLIL 181

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL 306
           G+AQ  ++ EA++L++ ++ +    D   L+S++      ALLE G Q+H + +K  + L
Sbjct: 182 GYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGL 241

Query: 307 I---LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
           +   + N++LDMY KCG   +A ++F  M++++V+SW+ MI+G  ++G   +A++LF  M
Sbjct: 242 LEMSVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEM 301

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
           + + I+P+ +T + VL ACSH+G +++G  +F  +     I P  EHY+CM+DLLGR G+
Sbjct: 302 QENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRGGR 361

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L+EA  LI +MP +P+   W+ LL  C++H + ++     + +L  +  +P  Y+++SN+
Sbjct: 362 LKEAKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVMVSNM 421

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           YA++  W E  ++R+T++ +G+ KE G SW+E++K+IH F   D  HP I++I++ LK +
Sbjct: 422 YAHAGYWKESEKIRETLKRKGLKKEAGRSWVEMDKEIHIFYNGDGMHPLIEEIHEVLKEM 481

Query: 544 IQKLV-GVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG------KTIRI 596
            +++   +GY    N+ L D+E E K +S++ HSEKLAI  GL+ + +G      + IRI
Sbjct: 482 EKRVKEEMGYVHSINFSLHDVEEESKMESLRVHSEKLAI--GLVLVRRGLKLKGERVIRI 539

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KNLR+CGDCH F K  +K+     V+RD  R+H F++G CSCGDYW
Sbjct: 540 FKNLRVCGDCHAFIKGLSKVLKIAFVVRDANRFHRFENGLCSCGDYW 586



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 22/183 (12%)

Query: 22  SLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELI 81
            LT+         + RN  S     T +       +A++  + MQ +G+  DSVTY  ++
Sbjct: 258 GLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVL 317

Query: 82  KCCLARHAVEEAK-----LVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
             C     ++E K     L  N  +    E    +V++L     +   L+EA+ L ++MP
Sbjct: 318 SACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLL----GRGGRLKEAKNLIEKMP 373

Query: 137 ER-NVVSWTTMISA---YCDAKMNDKALELLIFMLREGVRP-------NMFTYSAVLRAC 185
            + NV  W T++S    + D +M  +  E+L  + REG  P       NM+ ++   +  
Sbjct: 374 LKPNVGIWQTLLSVCRMHGDVEMGKQVGEIL--LRREGNNPANYVMVSNMYAHAGYWKES 431

Query: 186 DSL 188
           + +
Sbjct: 432 EKI 434


>gi|356534396|ref|XP_003535741.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g04780-like [Glycine max]
          Length = 632

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/607 (37%), Positives = 350/607 (57%), Gaps = 20/607 (3%)

Query: 56  PRAMKAMHAMQCHGVRADSVTYAE-------LIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           PR +  +   +    + ++V + +       L++ C    +    +  H  ++  G E +
Sbjct: 25  PRKLSVISEAKPESSKVENVVHMDRVSNLHYLLQLCAKTGSSMGGRACHAQIIRIGLEMD 84

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
                +L+NM+ K SL+   +   D+M  ++++   T I A      + KAL+LLI M R
Sbjct: 85  ILTSTMLINMYSKCSLVHSTRKKXDEMLVKSLILXNTRIGALTQNAEDRKALKLLIRMQR 144

Query: 169 EGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           E    N FT S+VL  C    +++   QLH   IK   +S+ FV +AL+ +YAK   +++
Sbjct: 145 EVTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVXTALLHVYAKCSSIKD 204

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F  MP ++ V W+S++ G+ QN   DEAL L+   +  GF  D   ++S + AC G
Sbjct: 205 ASQMFESMPEKNAVTWSSMMAGYVQNGFHDEALLLFHNAQLMGFDQDPFNISSAVSACAG 264

Query: 286 LALLELGTQVHV--HVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ-KDVISWST 342
           LA L  G QVH   H   +  ++ + ++L+DMY KCG + +A  VF   ++ + ++ W+ 
Sbjct: 265 LATLVEGKQVHAMSHKSGFGSNIYVASSLIDMYAKCGCIREAYLVFEGFVEVRSIVLWNA 324

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           MISG A++  +QEA+ LFE M+     P+ +T V VL ACSH G  E+G  +F  M + +
Sbjct: 325 MISGFARHALAQEAMILFEKMQQRGFFPDDVTYVSVLNACSHMGLHEEGQKYFDLMVRQH 384

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG-------ACKVHRN 455
            + P   HYSCMID+LGRAG +Q+A  LI  M +   +  W ++ G       +C+++ N
Sbjct: 385 NLSPSVLHYSCMIDILGRAGLVQKAYDLIGRMSFNATSSMWGSVRGLSXLIKASCRIYGN 444

Query: 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE 515
            + A  AAK +  ++P + G +ILL+NIYA ++K DEVA  RK +R   + KE G SWIE
Sbjct: 445 IEFAEIAAKHLFEMEPNNAGNHILLANIYAANKKSDEVARARKLLRETDVRKERGTSWIE 504

Query: 516 VNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYH 575
           +  +IH+F V + +HPQID     L +L+ +L  + Y  DTN  L D+E  +K   + +H
Sbjct: 505 IKNKIHSFTVGERNHPQIDDNYAKLDNLVVELKKLNYKVDTNNDLHDVEESRKHMLLGHH 564

Query: 576 SEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDG 635
           SEKLAI FGL+ L     IRI KNLRICGDCHTF KL +K  ++ I++RD  R+HHF+DG
Sbjct: 565 SEKLAITFGLVCLPTEIPIRIIKNLRICGDCHTFMKLVSKFASREIIVRDTNRFHHFKDG 624

Query: 636 NCSCGDY 642
            CSCG++
Sbjct: 625 LCSCGEF 631


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/527 (39%), Positives = 329/527 (62%), Gaps = 6/527 (1%)

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
           S +  A+ LF+ M E ++V + +M   Y       +   L + +L +G+ P+ +T+ ++L
Sbjct: 77  SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLL 136

Query: 183 RACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
           +AC     L   RQLHC  +K+G + +V+V   LI++Y +  ++ +A CVF+ +    +V
Sbjct: 137 KACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVV 196

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
            +N++I G+A+ +  +EAL+L++ M+      ++ TL SVL +C  L  L+LG  +H + 
Sbjct: 197 CYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYA 256

Query: 300 LKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
            K+     + +N AL+DM+ KCGSL+DA+S+F +M  KD  +WS MI   A +G +++++
Sbjct: 257 KKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSM 316

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
            +FE M+   ++P+ IT +G+L ACSH G VE+G  +F  M   +GI P  +HY  M+DL
Sbjct: 317 LMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDL 376

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           L RAG L++A + I ++P  P  + WR LL AC  H N DLA   +++I  LD    G Y
Sbjct: 377 LSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDY 436

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           ++LSN+YA ++KW+ V  +RK M+ R   K PGCS IEVN  +H F   D       K++
Sbjct: 437 VILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLH 496

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQ-DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRI 596
           + L  ++++L   GY PDT+ V+  ++  ++KE +++YHSEKLAI FGL++   G TIR+
Sbjct: 497 RALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRV 556

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KNLR+C DCH  AKL + +  + +V+RD  R+HHF+DG CSCGD+W
Sbjct: 557 VKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 152/302 (50%), Gaps = 7/302 (2%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+  D+ T+  L+K C    A+EE + +H   +  G +   ++   L+NM+ +   ++ A
Sbjct: 124 GILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSA 183

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC--- 185
           + +FD++ E  VV +  MI+ Y      ++AL L   M  + ++PN  T  +VL +C   
Sbjct: 184 RCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALL 243

Query: 186 DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
            SL + + +H    K  F   V V +ALID++AK G L +A  +F +M  +D   W+++I
Sbjct: 244 GSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMI 303

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH-VLKYD- 303
             +A +   ++++ +++RM+      D+ T   +L AC+    +E G +     V K+  
Sbjct: 304 VAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGI 363

Query: 304 -HDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFE 361
              +    +++D+  + G+LEDA     ++ I    + W  +++  + +     A K+ E
Sbjct: 364 VPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSE 423

Query: 362 SM 363
            +
Sbjct: 424 RI 425



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/219 (19%), Positives = 103/219 (47%), Gaps = 6/219 (2%)

Query: 52  QRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           +R+ P  A+     MQ   ++ + +T   ++  C    +++  K +H +     F     
Sbjct: 207 RRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVK 266

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           +   L++M  K   L++A  +F++M  ++  +W+ MI AY +    +K++ +   M  E 
Sbjct: 267 VNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSEN 326

Query: 171 VRPNMFTYSAVLRACDSLIILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           V+P+  T+  +L AC     + +        + K G    +    +++D+ ++ G L +A
Sbjct: 327 VQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDA 386

Query: 227 ECVFNEMPTRDL-VVWNSIIGGFAQNSDVDEALNLYKRM 264
               +++P     ++W  ++   + ++++D A  + +R+
Sbjct: 387 YEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERI 425


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 241/689 (34%), Positives = 376/689 (54%), Gaps = 82/689 (11%)

Query: 28  PVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHG-VRADSVTYAELIKCCLA 86
           P A  +T+  N+  ++  F R         A+   HA+   G +R D  ++  LI     
Sbjct: 119 PPARRDTVLHNA--MMSAFARASLAAP---AVSVFHALLGSGSLRPDDYSFTALISAVGQ 173

Query: 87  RH--AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLE---EAQVLFDQMPERNVV 141
            H  A      +H  VL  G      + N L+ +++K    E   +A+ + D+MP+++ +
Sbjct: 174 MHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDL 233

Query: 142 SWTTM-------------------------------ISAYCDAKMNDKALELLIFMLREG 170
           +WTTM                               IS Y  + M   A EL   M+ E 
Sbjct: 234 TWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEK 293

Query: 171 VRPNMFTYSAVLRACDS---LIILRQLHCGIIKV--GF--ESDVFVRSALIDIYAKLGEL 223
           V  + FT+++VL AC +    +  + +H  II++   F  E+ + V +AL+ +Y+K G++
Sbjct: 294 VPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKI 353

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK---------------RAG 268
             A+ +F+ M  +D+V WN+I+ G+  +  +D+A+ ++K M                  G
Sbjct: 354 VIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGG 413

Query: 269 FAADQSTLTSVLRA----------------CTGLALLELGTQVHVHVLK--YDHDLILNN 310
            + D   L + +RA                C  L  L+ G Q+H H+++  ++      N
Sbjct: 414 LSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGN 473

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           ALL MY KCG++ DA  VF  M   D +SW+ MIS L Q+G+ +EAL+LF+ M    I P
Sbjct: 474 ALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDP 533

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           + I+ + +L AC+HAG V++G+++F+SMK+ +GI PG +HY+ +IDLLGR+G++ EA  L
Sbjct: 534 DRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDL 593

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
           I  MP+EP    W A+L  C+ + + +    AA ++  + PQ  GTYILLSN Y+ + +W
Sbjct: 594 IKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRW 653

Query: 491 DEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGV 550
            + A VRK MR RG+ KEPGCSWIEV  +IH F V D+ HP+  ++ + L+ +  ++  +
Sbjct: 654 VDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKL 713

Query: 551 GYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFA 610
           GY PDT +VL D+E  +KE  +  HSEKLA+ FGL+ L  G T+ + KNLRICGDCHT  
Sbjct: 714 GYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAM 773

Query: 611 KLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
              +K   + IV+RD  R+HHF+DG CSC
Sbjct: 774 MFMSKAVGREIVVRDVRRFHHFKDGECSC 802


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/627 (36%), Positives = 361/627 (57%), Gaps = 12/627 (1%)

Query: 26  TPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCL 85
            PP A  N ++ N   +L  + R          ++ M  M+  GV AD +T   ++  C 
Sbjct: 226 APPGAGRNVVSWNV--MLGGYARNGEAGAAFGLLREMQ-MEERGVPADEITMLSVLPVCS 282

Query: 86  ARHAVEEAKLVHNHVLSGGFEPETFLV-NILLNMHVKFSLLEEAQVLFDQMPERNVVSWT 144
               + + + +H  V+  G      +V N L+  + +   L  A  +FD +  + V SW 
Sbjct: 283 GLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWN 342

Query: 145 TMISAYCDAKMNDKALELLIFMLRE-GVRPNMFTYSAVLRACDSLIIL---RQLHCGIIK 200
            +I A+        A+EL   M    G +P+ F+  ++L AC +L  L   +  H  I++
Sbjct: 343 ALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILR 402

Query: 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNL 260
            G E D F+R +L+ +Y + G    A  +F+ +  +D V WN++I G++QN    E+L L
Sbjct: 403 NGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQL 462

Query: 261 YKRM--KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMY 316
           ++ M  K+ G        TS L AC+ L  + LG ++H   LK D   D  L+++++DMY
Sbjct: 463 FREMQSKKGGHWPSLLAATSALVACSELPAVRLGKEMHCFALKADLCEDSFLSSSIIDMY 522

Query: 317 CKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIV 376
            KCGS++DA   F R+  KD +SW+ MI+G A NG  +EA+ L++ M    ++P+  T +
Sbjct: 523 SKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYL 582

Query: 377 GVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY 436
           G+L AC HAG +EDG   F+ M+    I+   EHY+C+I +L RAG+  +AV L+  MP 
Sbjct: 583 GLLMACGHAGMLEDGLCFFQEMRNLPKIEAKLEHYACVIGMLSRAGRFADAVALMEVMPE 642

Query: 437 EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEV 496
           EPDA    ++L AC +H   +L    A K+L L+P     Y+L SN+YA S++WDE+ +V
Sbjct: 643 EPDAKILSSVLSACHMHGEVELGKKVADKLLELEPHKAEHYVLASNMYAGSRQWDEMRKV 702

Query: 497 RKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDT 556
           RK +R  G+ KEPGCSWI++  ++++F   ++S P++ K+ K    L +K+   GYAPDT
Sbjct: 703 RKMLRDAGVAKEPGCSWIDIAGKVYSFVAGENSLPEMHKVRKMWYSLEEKIRAAGYAPDT 762

Query: 557 NYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKM 616
             +L +LE E+K +++++HSEK AI FGL+       +R+ KN+R+C DCH  AKL +K+
Sbjct: 763 TVMLHELEEEEKVEALRWHSEKQAIAFGLLRTAGPTKVRVFKNIRMCKDCHNAAKLISKV 822

Query: 617 ENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            ++ IV+RD  R+HHF+DG CSCGDYW
Sbjct: 823 ADREIVVRDKKRFHHFRDGLCSCGDYW 849



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/365 (31%), Positives = 185/365 (50%), Gaps = 32/365 (8%)

Query: 40  SSLLDDFTRFCYQRD----LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL 95
           + LL D +R     D    LPR + A       GV  D  T    +K C      ++ + 
Sbjct: 34  NGLLADLSRAGRHADALAILPRLLAA-----SDGVAPDRFTLPPALKSCRG----DDGRQ 84

Query: 96  VHNHVLSGGF-EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK 154
           VH      G  + + F+ N L++M+ +   +++A+ +F+ M  RN+VSW  +++A  D +
Sbjct: 85  VHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPR 144

Query: 155 MNDKALELLIFMLRE---GVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVF 208
              + LEL    L +      P+  T   VL  C +L      R +H   +K G+++   
Sbjct: 145 ---RGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPR 201

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYK--R 263
           V + L+D+YAK GE+ +AEC F E P    R++V WN ++GG+A+N +   A  L +  +
Sbjct: 202 VSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQ 261

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL---ILNNALLDMYCKCG 320
           M+  G  AD+ T+ SVL  C+GL  L    ++H  V++    L   ++ NAL+  Y +CG
Sbjct: 262 MEERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCG 321

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM-KVSRIKPNYITIVGVL 379
            L  A  VF  +  K V SW+ +I   AQNG +  A++LF  M      KP++ +I  +L
Sbjct: 322 CLLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLL 381

Query: 380 FACSH 384
            AC +
Sbjct: 382 LACGN 386



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 126/275 (45%), Gaps = 26/275 (9%)

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRA--GFAADQSTLTSVLRACTGLALLELGTQV 295
           L  WN ++   ++     +AL +  R+  A  G A D+ TL   L++C G    + G QV
Sbjct: 30  LPQWNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRG----DDGRQV 85

Query: 296 HVHVLKY---DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           H    K    D D  + N+L+ MY +CG ++DA  VF  M  ++++SW+ +++ +A    
Sbjct: 86  HAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVAD--- 142

Query: 353 SQEALKLF----ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPG 407
            +  L+LF    E +      P+  T+V VL  C+   + E G   H  ++K   G D  
Sbjct: 143 PRRGLELFRDCLEDLG-GTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKS--GWDAA 199

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA----VTWRALLGACKVHRNTDLAICAA 463
               + ++D+  + G++ +A     E P  P A    V+W  +LG    +     A    
Sbjct: 200 PRVSNVLVDMYAKCGEMADAECAFLEAP--PGAGRNVVSWNVMLGGYARNGEAGAAFGLL 257

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRK 498
           +++   +   P   I + ++        E+A++R+
Sbjct: 258 REMQMEERGVPADEITMLSVLPVCSGLPELAKLRE 292


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/508 (40%), Positives = 313/508 (61%), Gaps = 11/508 (2%)

Query: 144 TTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIK 200
            +MI  Y D+  +  ++ +   M + G+ P+  T+  VL++   L    + + +HC II+
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNL 260
           +GFES+V+V +AL+++Y     + +A  VF+E+P R++V WN++I G+  N    + +++
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDV 230

Query: 261 YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD-----LILNNALLDM 315
           ++ M+ AG    + T+  VL AC  L  L  G  +  ++   DH+     + +  AL+DM
Sbjct: 231 FREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYI---DHNRLRLNVFVGTALIDM 287

Query: 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITI 375
           Y KCG +++A  +F  M  K+V +W+ +ISG A NG  + AL+ F  M + + KP+ +T 
Sbjct: 288 YAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTF 347

Query: 376 VGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435
           +GVL AC H G V +G  +F SMK+ +G+ P  EHY CM+DLLGRAG L EA +LI  M 
Sbjct: 348 LGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMS 407

Query: 436 YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAE 495
            +PD + WR LLGAC++H N  L   A KK+L L+P +   Y+LL+N+YA  Q+WD+V E
Sbjct: 408 MQPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGE 467

Query: 496 VRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPD 555
           VR+ M  R + K PGCS IE++  ++ F V++   P  +++ K L  + +KL   GY  D
Sbjct: 468 VREMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYVAD 527

Query: 556 TNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAK 615
           T     D+E E+KE S+ YHSEKLA+ FGL+    G T+RI KNLRIC DCH F K+ +K
Sbjct: 528 TGMASYDIEEEEKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSK 587

Query: 616 MENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +  + I +RD  R+HHF  G CSC DYW
Sbjct: 588 VYRRDISVRDRNRFHHFVGGACSCKDYW 615



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 152/312 (48%), Gaps = 11/312 (3%)

Query: 68  HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           +G+  DS T+  ++K        E  K +H  ++  GFE   ++   L+NM+   S + +
Sbjct: 136 NGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSD 195

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A+ +FD++P+RN+VSW  +I+ Y   +M  K +++   M   G +P   T   VL AC  
Sbjct: 196 ARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAH 255

Query: 188 LIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           L  L Q   +   I       +VFV +ALID+YAK G +  AE +F  M  +++  WN +
Sbjct: 256 LGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVL 315

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
           I G+A N   + AL  + RM    F  D+ T   VL AC    L+  G + +   +K + 
Sbjct: 316 ISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEG-RTYFTSMKEEF 374

Query: 305 DLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKL 359
            L         ++D+  + G L++A  +   M +Q D I W  ++     +G  Q  L  
Sbjct: 375 GLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQ--LGE 432

Query: 360 FESMKVSRIKPN 371
           F   K+  ++PN
Sbjct: 433 FAIKKLLELEPN 444



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 5/216 (2%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RN  S     T + + R   + +     MQ  G +   VT   ++  C    A+ + + +
Sbjct: 206 RNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWI 265

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
            +++         F+   L++M+ K  +++EA+ +F  M  +NV +W  +IS Y      
Sbjct: 266 DDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRG 325

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRAC--DSLIILRQLHCGIIK--VGFESDVFVRSA 212
           + AL+    M+ E  +P+  T+  VL AC    L+   + +   +K   G    +     
Sbjct: 326 ESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGC 385

Query: 213 LIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGG 247
           ++D+  + G L  A+ +   M  + D ++W  ++G 
Sbjct: 386 MVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGA 421


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/602 (37%), Positives = 352/602 (58%), Gaps = 10/602 (1%)

Query: 50  CYQRD--LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY +      A+     MQ   +  + VT   ++  C     V+E + VH  V+    +P
Sbjct: 276 CYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDP 335

Query: 108 E-TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
           E  FL   L+ ++     L +   +F+ + E+ ++SW T+IS +      ++AL L + M
Sbjct: 336 ELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQM 395

Query: 167 LREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
             +G+ P+ ++ ++ L AC ++   +   Q+H  IIK G  +D FV++ALID+YAK G +
Sbjct: 396 QTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFND-FVQNALIDMYAKCGFV 454

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
            +A  +F ++  + LV WNS+I GF+QN    EA+ L+ +M       D+ T  SV++AC
Sbjct: 455 HSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQAC 514

Query: 284 TGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
           + L  LE G  VH  ++ Y    D  L+ AL DMY KCG L+ A  VF RM ++ ++SWS
Sbjct: 515 SHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWS 574

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
            MI+G   +G     + LF  M  S IKPN IT + +L ACSHAG VE+G  +F SM +F
Sbjct: 575 VMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEF 634

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
            G++P  +H++CM+DLL RAG L  A ++I  +P+  ++  W ALL  C++H+  D+   
Sbjct: 635 -GVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKS 693

Query: 462 AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIH 521
             K +L++D  D G Y LLSNIYA    WD+  +VR  M+++G+ K PG S IE++K+I+
Sbjct: 694 IEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIY 753

Query: 522 AFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAI 581
            F   D+SH Q   I + L++    +    Y  + +  +       KE+++  HSEKLAI
Sbjct: 754 RFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAI 813

Query: 582 VFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641
            FG+++   G T+RI KNLR+C DCH+FAK+ +K+  + I++RD  R+H F++G+CSC D
Sbjct: 814 AFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCND 873

Query: 642 YW 643
           YW
Sbjct: 874 YW 875



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/417 (30%), Positives = 218/417 (52%), Gaps = 11/417 (2%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M    V  DSVT   + + C    ++   + VH +V+    E    L N L+ M+ K   
Sbjct: 192 MISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGD 251

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L  A+ LF+ +P R    WT MIS Y  +    +AL +   M    + PN  T   VL A
Sbjct: 252 LYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCA 311

Query: 185 CDSLIIL---RQLHCGIIKVGFESDV-FVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           C  L  +   R +H  +I+   + ++ F+  AL+++YA  G LR+   VF  +  + ++ 
Sbjct: 312 CARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILS 371

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           WN++I  F +N   +EAL L+ +M+  G   D  +L S L AC  ++  +LG Q+H +++
Sbjct: 372 WNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYII 431

Query: 301 KY-DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
           K  + +  + NAL+DMY KCG +  A  +F ++ +K +++W++MI G +QNGYS EA+ L
Sbjct: 432 KTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITL 491

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLL 418
           F+ M ++ +K + +T + V+ ACSH G++E G W H K +   YG+       + + D+ 
Sbjct: 492 FDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLI--MYGLRKDSYLDTALTDMY 549

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL--NLDPQD 473
            + G+LQ A  +   M  E   V+W  ++    +H   +  I    ++L   + P D
Sbjct: 550 SKCGELQMAHGVFDRMS-ERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPND 605



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 194/383 (50%), Gaps = 18/383 (4%)

Query: 75  VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ 134
           + Y  L + C     + +   +H H+   G          L+  + +  + E ++ +FD 
Sbjct: 2   ILYMPLFRRCATSTTLTQ---LHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDT 58

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFML-REGVRPNMFTYSAVLRACDS---LII 190
            P+ +   W  +I  Y      ++A+ L   M+ ++  + + F + +VL+AC     L +
Sbjct: 59  FPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSV 118

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
             ++H  +IK GFESD  V ++L+ +Y ++  L +A   F+ MP RD+V W+SI+  F Q
Sbjct: 119 GGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQ 178

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
           N    E L+++ +M       D  T+ SV  AC+ L  L LG  VH +V++   + +  L
Sbjct: 179 NGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASL 238

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
           NN+L+ MY K G L  A  +F  +  +    W+ MIS   Q+G  QEAL +F  M+  ++
Sbjct: 239 NNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKM 298

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY---GIDPGREHYS-CMIDLLGRAGKL 424
           +PN +T+VGVL AC+  G V++G    +S+  F     +DP  +     +++L    G L
Sbjct: 299 EPNQVTMVGVLCACARLGRVKEG----RSVHGFVIRRAMDPELDFLGPALMELYADTGNL 354

Query: 425 QEAVKLIHEMPYEPDAVTWRALL 447
           ++  K + E   E   ++W  L+
Sbjct: 355 RDCHK-VFETIKEKTILSWNTLI 376



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 168/375 (44%), Gaps = 50/375 (13%)

Query: 175 MFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           M  Y  + R C +   L QLH  +   G        + LI+ YA++G   +++ VF+  P
Sbjct: 1   MILYMPLFRRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFP 60

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT-----SVLRACTGLALL 289
             D  +W  +I  +      +EA++LY  M       DQ+ ++     SVL+AC+G   L
Sbjct: 61  KPDSFMWGVLIKCYVWGGFFEEAVSLYHEM----VYQDQTQISNFVFPSVLKACSGFGDL 116

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
            +G +VH  V+K  ++ D ++  +LL MY +   L+DA   F  M  +DV++WS+++   
Sbjct: 117 SVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNF 176

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-------------- 393
            QNG + E L +F  M    ++P+ +T++ V  ACS  G +  G +              
Sbjct: 177 VQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNA 236

Query: 394 --------HFKSMKKFYGIDPGREHYSC--------MIDLLGRAGKLQEAVKL---IHEM 434
                    +  +   Y  +   E+  C        MI    ++G  QEA+ +   + E 
Sbjct: 237 SLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEF 296

Query: 435 PYEPDAVTWRALLGAC----KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
             EP+ VT   +L AC    +V     +     ++   +DP+       L  +YA++   
Sbjct: 297 KMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRA--MDPELDFLGPALMELYADTGNL 354

Query: 491 DEVAEVRKTMRARGI 505
            +  +V +T++ + I
Sbjct: 355 RDCHKVFETIKEKTI 369


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/529 (40%), Positives = 322/529 (60%), Gaps = 10/529 (1%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L  A+ LF QM   +     TMI  Y  ++   +A+ L  FM+  GV  + +TY  VL A
Sbjct: 61  LNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAA 120

Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C  L  +   R+ HC ++K GF SD+FV +ALI  Y   G    A  VF+E   RD+V W
Sbjct: 121 CARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTW 180

Query: 242 NSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           N +I         ++A +L   M K      D+ T+ S++ AC  L  LE G  +H +  
Sbjct: 181 NIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSK 240

Query: 301 KYDH-----DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           + D      DL+L  AL+DMY KCGS++ A+ VF RM  ++V +W+ +I GLA +G+ ++
Sbjct: 241 ELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGED 300

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           A+ LF+ M+  ++ P+ +T + +L ACSHAG V++G   F++MK  + I+P  EHY C++
Sbjct: 301 AISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVV 360

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           DLL RA K+ +A+  I  MP + ++V W  LLGAC+   + DLA    ++++ L+P   G
Sbjct: 361 DLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCG 420

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
            Y++LSN+YA   +WD   ++RK M+ +GI K PGCSWIE+N  IH F   D SH Q ++
Sbjct: 421 RYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQ 480

Query: 536 INKHLKHLIQKL-VGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTI 594
           I   ++ + +++ +  G+ P T  VL D+E E+KE S+  HSEKLAI  GL+S   G  I
Sbjct: 481 IYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPI 540

Query: 595 RIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           RI KNLR+C DCH+F K+T+K+ N+ IV RD  R+HHF++G+CSC D+W
Sbjct: 541 RIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 589



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 189/391 (48%), Gaps = 26/391 (6%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAEL 80
           F+    P    CNT+ R           +   ++   A+   + M   GV  D+ TY  +
Sbjct: 68  FTQMQNPDPFICNTMIRG----------YARSQNPYEAVSLYYFMVERGVPVDNYTYPFV 117

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
           +  C    AV+  +  H  VL  GF  + F++N L+  +        A  +FD+   R+V
Sbjct: 118 LAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDV 177

Query: 141 VSWTTMISAYCDAKMNDKALELLIFMLR-EGVRPNMFTYSAVLRACDSLIILRQ---LHC 196
           V+W  MI+A+ +  +++KA +LL  M + + +RP+  T  +++ AC  L  L +   LH 
Sbjct: 178 VTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHS 237

Query: 197 ---GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
               + K     D+ + +AL+D+YAK G +  A  VF  M  R++  WN++IGG A +  
Sbjct: 238 YSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGH 297

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT---QVHVHVLKYDHDLILNN 310
            ++A++L+ +M+      D  T  ++L AC+   L++ G    Q   +  + +  +    
Sbjct: 298 GEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYG 357

Query: 311 ALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
            ++D+ C+   ++DA++    M I+ + + W+T++      G+   A K+    +V  ++
Sbjct: 358 CVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKI--GRRVIELE 415

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
           P+      V+ +  +AG  +  W+H   ++K
Sbjct: 416 PDSCGRY-VMLSNLYAGVSQ--WDHALKLRK 443



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 144/284 (50%), Gaps = 10/284 (3%)

Query: 185 CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRDLVVWN 242
           C S+   +Q H  +++     +    S LI   A    G+L  A  +F +M   D  + N
Sbjct: 21  CTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICN 80

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK- 301
           ++I G+A++ +  EA++LY  M   G   D  T   VL AC  L  ++LG + H  VLK 
Sbjct: 81  TMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKN 140

Query: 302 -YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
            +  DL + NAL+  Y  CGS   A  VF     +DV++W+ MI+     G S++A  L 
Sbjct: 141 GFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLL 200

Query: 361 ESM-KVSRIKPNYITIVGVLFACSHAGFVEDG---WNHFKSMKKFYGIDPGREHYSCMID 416
           + M K+  ++P+ +T+V ++ AC+  G +E G    ++ K + KF  I+      + ++D
Sbjct: 201 DEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFE-INCDLVLETALVD 259

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           +  + G +  A+++   M    +  TW AL+G   +H + + AI
Sbjct: 260 MYAKCGSIDLALQVFRRMRVR-NVFTWNALIGGLAMHGHGEDAI 302


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/525 (40%), Positives = 319/525 (60%), Gaps = 13/525 (2%)

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
           +L  A  +F  +   NV +W TM   Y ++     AL     M+   + P+  TY  +L+
Sbjct: 79  VLSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLK 138

Query: 184 ACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           A    + +R+   +H   I+ GFES VFV+++L+ IYA  G+  +A  VF  M  RDLV 
Sbjct: 139 AISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVA 198

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
             S+I GFA N    EAL L++ M   G   D  T+ S+L A   L  LELG +VHV++L
Sbjct: 199 XISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYLL 258

Query: 301 KYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K     +  + N+LLD+Y KC ++ +         +++ +SW+++I GLA NG+ +EAL+
Sbjct: 259 KVGLRENSHVTNSLLDLYAKCDAIWEX--------ERNAVSWTSLIVGLAVNGFGEEALE 310

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
           LF  M+   + P+ IT VGVL+ACSH G +++G+++F+ MK+ +GI P  EHY CM+DLL
Sbjct: 311 LFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIMPRIEHYGCMVDLL 370

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
            RAG +++A + I  MP +P+AVTWR LLGAC +H +  L   A   +L L+P+  G Y+
Sbjct: 371 SRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGLGETARSHLLKLEPKHSGDYV 430

Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
           LLSN+Y +  +W +V  +R++M   G+ K  G S +E+  +++ F + + SHPQ   +  
Sbjct: 431 LLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLVELGNRVYEFTMGNRSHPQSQDVYA 490

Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRK 598
            L+ + + L   GY P T  VL D+E E+KE ++ YHSEK AI F  ++   G TIR+ K
Sbjct: 491 LLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKXAIAFMRLNTAPGTTIRVMK 550

Query: 599 NLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           NLR+C DCH   KL AK+ ++ IVIRD  R+HHF+ G+CSC DYW
Sbjct: 551 NLRVCADCHMAIKLMAKVYDREIVIRDRGRFHHFRGGSCSCKDYW 595



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 173/397 (43%), Gaps = 67/397 (16%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPR-AMKAMHAMQCHGVRADSVTYAE 79
           F++   P V + NT+TR  +           + D P  A++    M    +  D+ TY  
Sbjct: 87  FTMIHNPNVFTWNTMTRGYA-----------ESDNPSPALRFYRQMIVSRIEPDTHTYPF 135

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139
           L+K       V E + +H+  +  GFE   F+ N LL+++      E A  +F+ M +R+
Sbjct: 136 LLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRD 195

Query: 140 VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHC 196
           +V+  ++I+ +       +AL L   M  EGV P+ FT  ++L A   L  L   R++H 
Sbjct: 196 LVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHV 255

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
            ++KVG   +  V ++L+D+YAK   +   E        R+ V W S+I G A N   +E
Sbjct: 256 YLLKVGLRENSHVTNSLLDLYAKCDAIWEXE--------RNAVSWTSLIVGLAVNGFGEE 307

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMY 316
           AL L++ M+  G    + T   VL AC+                                
Sbjct: 308 ALELFREMEGQGLVPSEITFVGVLYACS-------------------------------- 335

Query: 317 CKCGSLEDAMSVFSRM-----IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
             CG L++    F RM     I   +  +  M+  L++ G  ++A +  ++M V   +PN
Sbjct: 336 -HCGMLDEGFDYFRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPV---QPN 391

Query: 372 YITIVGVLFACS---HAGFVEDGWNHFKSMKKFYGID 405
            +T   +L AC+   H G  E   +H   ++  +  D
Sbjct: 392 AVTWRTLLGACTIHGHLGLGETARSHLLKLEPKHSGD 428


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/594 (37%), Positives = 338/594 (56%), Gaps = 35/594 (5%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G   ++ T+   IK C A       K +H HV   G   E F+   L++M+ K SL++ A
Sbjct: 5   GASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNA 64

Query: 129 QVLFDQMPERN--VVSWTTMISAYCDAKMNDKALELLIFM--LRE-GVRPNMFTYSAVLR 183
           + LFD+ P+     V + +++S Y    +N +  ++++    +RE GV  N  T   +++
Sbjct: 65  RKLFDENPQSRKLTVCYNSLLSGY---ALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQ 121

Query: 184 ACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
            C    +L +   +H   +K G + D  V + L+ +Y K GE+     +F+EMP + L+ 
Sbjct: 122 PCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLIT 181

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VH 298
           WN++I G+AQN   +  L LYK M+  GF  D  TL  VL +C  L  L +G +V   + 
Sbjct: 182 WNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKME 241

Query: 299 VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
              +  +  LNNAL++MY +CG+L+ A  +F  M  K V+SW+ +I G   +G  + A+ 
Sbjct: 242 GFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVG 301

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
           LF+ M    IKP+    V VL ACSHAG    G ++F  M++ YG+ PG EHYSCM+DLL
Sbjct: 302 LFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLL 361

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
           GRAG+L EA +LI  M    D   W ALLGACK+HRN +LA  A ++++ L+P + G Y+
Sbjct: 362 GRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTGYYV 421

Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
           LLSN+Y  +   + +  VR  MR R + K+PGCS++E   ++H F   D +HPQ ++I K
Sbjct: 422 LLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYK 481

Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKED---------SIQYHSEKLAIVFGLMSLT 589
            L  L               +++DL+G +K D         S+  HSEKLA+ F L++  
Sbjct: 482 KLNEL-------------ENLVKDLDGCKKNDHERREEYLNSMGVHSEKLAVAFALLNTR 528

Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +   I I KNLRICGDCH F KL +K+ ++  V+RD  R+HHF++G CSC +YW
Sbjct: 529 KETEIIIIKNLRICGDCHLFIKLVSKIVDRQFVVRDATRFHHFKNGFCSCKEYW 582



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 167/302 (55%), Gaps = 9/302 (2%)

Query: 166 MLREGVRPNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           MLR G  PN FT+   +++C +L   I  +QLHC + K G   + FV+++LI +Y K   
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 223 LRNAECVFNEMP-TRDLVV-WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           + NA  +F+E P +R L V +NS++ G+A NS V + + L+  M+  G   +  T+  ++
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 281 RACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
           + C     L LG  VH   +K+  D D  + N LL MY K G ++    +F  M +K +I
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLI 180

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
           +W+ MI+G AQNG +   L+L++ M+     P+ +T+VGVL +C+H G +  G    + M
Sbjct: 181 TWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKM 240

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
           + F G        + ++++  R G L++A  +   MP +   V+W A++G   +H   ++
Sbjct: 241 EGF-GFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVK-SVVSWTAIIGGYGMHGQGEV 298

Query: 459 AI 460
           A+
Sbjct: 299 AV 300



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 5/198 (2%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  G   D +T   ++  C    A+   K V   +   GF    FL N L+NM+ +   
Sbjct: 205 MESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGN 264

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L++A+ +FD MP ++VVSWT +I  Y      + A+ L   M+R G++P+   + +VL A
Sbjct: 265 LKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSA 324

Query: 185 CDSLIILRQL--HCGII--KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLV 239
           C    +  +   + G++  K G        S ++D+  + G L  A  +   M  R D  
Sbjct: 325 CSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGA 384

Query: 240 VWNSIIGGFAQNSDVDEA 257
           +W +++G    + +V+ A
Sbjct: 385 LWGALLGACKIHRNVELA 402


>gi|222626043|gb|EEE60175.1| hypothetical protein OsJ_13106 [Oryza sativa Japonica Group]
          Length = 628

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/508 (40%), Positives = 308/508 (60%), Gaps = 5/508 (0%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           NIL   ++K   L  A+ LFD+MPERNV +W  M++   +   ++++L   + M REG+ 
Sbjct: 111 NILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMH 170

Query: 173 PNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P+ F   +V R C  L   +  RQ+H  +++ G + D+ V S+L  +Y + G L+  E V
Sbjct: 171 PDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAV 230

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
              +P+  +V  N+II G  QN D + AL  +  M+  G AAD  T  S + +C+ LA L
Sbjct: 231 LRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAAL 290

Query: 290 ELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
             G Q+H  V+K   D ++     L+ MY +CG L D+  VF      D    S MIS  
Sbjct: 291 AQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAY 350

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
             +G+ Q+A++LF+ M     +P+ +T + +L+ACSH+G  E+G + F+ M K YG+ P 
Sbjct: 351 GFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPS 410

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            +HY+C++DLLGR+G L EA  LI  MP  PD V W+ LL ACK  +N D+A   AK+++
Sbjct: 411 VKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVI 470

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
            LDP D  +Y+LLSNI A S++W +V+EVRK MR   + KEPG SW+E+   IH F   D
Sbjct: 471 ELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGD 530

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
            SHP+  +I++ L+ ++ K+   GY+PD + VL D+E E+KE S+ +HSEKLAI F  +S
Sbjct: 531 ESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLS 590

Query: 588 LTQGKTIRIRKNLRICGDCHTFAKLTAK 615
           L +G  IR+ KNLR+C DCH   KL ++
Sbjct: 591 LPEGVPIRVMKNLRVCDDCHLAIKLMSQ 618



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 162/345 (46%), Gaps = 38/345 (11%)

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           +S + RAC +L  LRQLH      G  +D F  + L+  YA LG+L  A  +F  +P R+
Sbjct: 47  FSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRN 106

Query: 238 LVVWNSIIGGFAQNSDV-------------------------------DEALNLYKRMKR 266
           ++ WN + GG+ +N D+                               +E+L  +  M+R
Sbjct: 107 VMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRR 166

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLED 324
            G   D+  L SV R C GL  +  G QVH +V++   D D+ + ++L  MY +CG L++
Sbjct: 167 EGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQE 226

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
             +V   +    ++S +T+I+G  QNG S+ AL+ F  M+   +  + +T V  + +CS 
Sbjct: 227 GEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSD 286

Query: 385 AGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
              +  G   H + MK   G+D      +C++ +  R G L ++ ++        D    
Sbjct: 287 LAALAQGQQIHGQVMKA--GVDKVVPVMTCLVHMYSRCGCLGDSERVFFGY-CGSDTFLL 343

Query: 444 RALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
            A++ A   H +   AI   K+++N    +P     L+ +YA S 
Sbjct: 344 SAMISAYGFHGHGQKAIELFKQMMN-GGAEPSDVTFLALLYACSH 387



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 15/241 (6%)

Query: 29  VASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARH 88
           + SCNTI    +             D   A++    M+  GV AD VT+   I  C    
Sbjct: 239 IVSCNTIIAGRTQ----------NGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLA 288

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           A+ + + +H  V+  G +    ++  L++M+ +   L +++ +F      +    + MIS
Sbjct: 289 ALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMIS 348

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD-SLIILRQLHCGIIKV---GFE 204
           AY       KA+EL   M+  G  P+  T+ A+L AC  S +    + C  +     G +
Sbjct: 349 AYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQ 408

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMP-TRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
             V   + ++D+  + G L  AE +   MP T D V+W +++       + D A  + KR
Sbjct: 409 PSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKR 468

Query: 264 M 264
           +
Sbjct: 469 V 469


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/633 (34%), Positives = 359/633 (56%), Gaps = 25/633 (3%)

Query: 23  LTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIK 82
           +T+ P     + +   S ++        YQ     ++    +M   G   D+ ++  ++K
Sbjct: 1   MTVVPSFVRNSAVASTSWNV--RLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILK 58

Query: 83  CCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV-- 140
            C +       + +H HV+ GG E E F++  L++M+ K  L+E+A+ +F++ P  +   
Sbjct: 59  SCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLG 118

Query: 141 VSWTTMISAY-CDAKMNDKALELLIFMLRE----GVRPNMFTYSAVLRAC---DSLIILR 192
           V +  +IS Y  ++K++D A     FM R     GV  +  T   ++  C   + L + R
Sbjct: 119 VCYNALISGYTANSKVSDAA-----FMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGR 173

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            LH   +K G  S+V V ++ I +Y K G + +   +F+EMP + L+ WN++I G++QN 
Sbjct: 174 SLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNG 233

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNN 310
              + L L+++MK +G   D  TL SVL +C  L   ++G +V   V    +  ++ L+N
Sbjct: 234 LAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSN 293

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           AL+ MY +CG+L  A +VF  M  K ++SW+ MI     +G  +  L LF+ M    I+P
Sbjct: 294 ALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRP 353

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           +    V VL ACSH+G  + G   F++MK+ Y ++PG EHYSC++DLLGRAG+L EA++ 
Sbjct: 354 DGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEF 413

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
           I  MP EPD   W ALLGACK+H+N D+A  A  K++  +P + G Y+L+SNIY++S+  
Sbjct: 414 IDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQ 473

Query: 491 DEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGV 550
           + +  +R  MR R   K+PG S++E   ++H F   D SH Q +++++ L  L   ++ +
Sbjct: 474 EGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSHEQTEEVHRMLDELETSVMEL 533

Query: 551 GYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFA 610
               D +       GE+   + + HSE+LAI FG+++   G  I + KNLR+C DCH F 
Sbjct: 534 AGNMDCD------RGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFI 587

Query: 611 KLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KL +K+ ++  V+RD  R+H+F+DG CSC DYW
Sbjct: 588 KLVSKIVDRRFVVRDASRFHYFKDGVCSCKDYW 620


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/561 (38%), Positives = 329/561 (58%), Gaps = 47/561 (8%)

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
           S+ EE  V FD       V W  MIS Y  + M  +A EL   M+ E V  + FT+++VL
Sbjct: 249 SVFEEVDVKFD-------VVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVL 301

Query: 183 RACDSLIIL---RQLHCGIIKV--GF--ESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235
            AC +       + +H  I ++   F  E+ + V +AL+ +Y+K G +  A  +F+ M +
Sbjct: 302 SACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKS 361

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMK---------------RAGFAADQSTLTSVL 280
           +D+V WN+I+ G+ ++S +D+A+ +++ M                  GF+ D   L + +
Sbjct: 362 KDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRM 421

Query: 281 R----------------ACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSL 322
           R                AC  L  L+ G Q+H H+  L ++      NAL+ MY +CG++
Sbjct: 422 RAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAV 481

Query: 323 EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
           ++A  +F  M   D +SW+ MIS L Q+G+ +EAL+LF+ M    I P+ I+ + VL AC
Sbjct: 482 KEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTAC 541

Query: 383 SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
           +H+G V++G+ +F+SMK+ +GI PG +HY+ +IDLLGRAG++ EA  LI  MP+EP    
Sbjct: 542 NHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSI 601

Query: 443 WRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502
           W A+L  C+   + +L   AA ++  + PQ  GTYILLSN Y+ + +W + A VRK MR 
Sbjct: 602 WEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRD 661

Query: 503 RGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQD 562
           RG+ KEPGCSWIE   ++H F V D+ HP+  K+ K L+ +  ++  +GY PDT  VL D
Sbjct: 662 RGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYVPDTKVVLHD 721

Query: 563 LEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIV 622
           +E  QKE  +  HSE+LA+ FGL+ L  G T+ + KNLRIC DCH      +K   + IV
Sbjct: 722 MEPHQKEHILFAHSERLAVGFGLLKLPPGATVTVLKNLRICDDCHAVMMFMSKAVGREIV 781

Query: 623 IRDPIRYHHFQDGNCSCGDYW 643
           +RD  R+HHF+DG CSCG+YW
Sbjct: 782 VRDVRRFHHFKDGECSCGNYW 802



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 192/448 (42%), Gaps = 90/448 (20%)

Query: 94  KLVHNHVLSGGF---------EPETFLVNILLNMHVKFSLLEEAQVLFDQMPE--RNVVS 142
           +L+H + LSG           +P       L+  +     L  A   FD +P+  R+ V 
Sbjct: 64  RLIHLYTLSGDLPAAATLFRADPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVL 123

Query: 143 WTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSL--IILR---QLHC 196
              +ISAY  A     A+ +   +L  G +RP+ ++++A+L A   L  I +R   QL C
Sbjct: 124 HNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQC 183

Query: 197 GIIKVGFESDVFVRSALIDIYAK---LGELRNAECVFNEMPTRDL--------------- 238
            ++K G    + V +AL+ +Y K   L   R+A  V +EMP +D                
Sbjct: 184 SVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGD 243

Query: 239 ----------------VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
                           VVWN++I G+  +  V EA  L++RM       D+ T TSVL A
Sbjct: 244 VGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSA 303

Query: 283 CTGLALLELGTQVHVHVLKYDHDLI------LNNALLDMYCKCGSLEDAMSVFSRMIQKD 336
           C        G  VH  + +   + +      +NNAL+ +Y KCG++  A  +F  M  KD
Sbjct: 304 CANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKD 363

Query: 337 VISWST-------------------------------MISGLAQNGYSQEALKLFESMKV 365
           V+SW+T                               M+SG    G+S++ALKLF  M+ 
Sbjct: 364 VVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRA 423

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
             +KP   T  G + AC   G ++ G      + +  G +      + +I +  R G ++
Sbjct: 424 EDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQL-GFEGSNSAGNALITMYARCGAVK 482

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVH 453
           EA  +   MP   D+V+W A++ A   H
Sbjct: 483 EANLMFLVMP-NIDSVSWNAMISALGQH 509



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 122/281 (43%), Gaps = 48/281 (17%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+K  + M+   V+    TYA  I  C    +++  K +H H++  GFE      N L+ 
Sbjct: 414 ALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALIT 473

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ +   ++EA ++F  MP  + VSW  MISA        +ALEL   M+ EG+ P+  +
Sbjct: 474 MYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRIS 533

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFE--------------SDVFVRSALIDIYAKLGEL 223
           +  VL AC+        H G++  GF+               D + R  LID+  + G +
Sbjct: 534 FLTVLTACN--------HSGLVDEGFQYFESMKRDFGIIPGEDHYTR--LIDLLGRAGRI 583

Query: 224 RNAECVFNEMPTRDL-VVWNSIIGGFAQNSDVD----EALNLYKRMKR------------ 266
             A  +   MP      +W +I+ G   + D++     A  L+K   +            
Sbjct: 584 GEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTY 643

Query: 267 --AGFAADQSTLTSVLR-----ACTGLALLELGTQVHVHVL 300
             AG   D + +  ++R        G + +E G +VHV V+
Sbjct: 644 SAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVV 684


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/611 (36%), Positives = 353/611 (57%), Gaps = 43/611 (7%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           +YA + +     + ++  +  H  ++  G +P  FL   ++ M+     L+ A V+FD++
Sbjct: 79  SYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRI 138

Query: 136 PERNVVSWTTMISAYC---DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---I 189
              + + + ++I AY            LE    M   G+  + FT   VL++C  L    
Sbjct: 139 DNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVC 198

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           + R +H   ++VG E D +V ++LID+Y K G + +A  +F++M  RD+  WN++I G+ 
Sbjct: 199 MGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYM 258

Query: 250 QNSDVDEALNLYKRMK---------------RAGFA------------------ADQSTL 276
           +  ++  A +L++RM+               + GFA                   +  T+
Sbjct: 259 KEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTI 318

Query: 277 TSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
            SVL AC   A LE G ++H   + +    +  +  AL  MY KC SL +A   F  + Q
Sbjct: 319 VSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQ 378

Query: 335 --KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
             K++I+W+TMI+  A +G   EA+ +FE+M  + ++P+ +T +G+L  CSH+G ++ G 
Sbjct: 379 NGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGL 438

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
           NHF  M   + ++P  EHY+C++DLLGRAG+L EA +LI +MP +     W ALL AC+ 
Sbjct: 439 NHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRS 498

Query: 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCS 512
           HRN ++A  AA+++  L+P + G Y+LLSN+YA +  W+EV ++R  ++ +G+ K PGCS
Sbjct: 499 HRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCS 558

Query: 513 WIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSI 572
           WIE+N + H F  AD SHPQ  +I K L+ L +K+   GY PDT++VL D+  E+KE ++
Sbjct: 559 WIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNL 618

Query: 573 QYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF 632
             HSEKLAI FGL++   G  +R+ KNLRICGDCH   K  +K+  + I++RD  R+H F
Sbjct: 619 TTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCF 678

Query: 633 QDGNCSCGDYW 643
           +DG+CSCGDYW
Sbjct: 679 KDGSCSCGDYW 689



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 156/352 (44%), Gaps = 50/352 (14%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           +S++  +TR          ++A   M   G+  D+ T   ++K C     V   + VH  
Sbjct: 147 NSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQ 206

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTT-------------- 145
            L  G E + ++   L++M+VK  ++ +A+ LFD+M  R++ SW                
Sbjct: 207 GLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVA 266

Query: 146 -----------------MISAYCDAKMNDKALELLIFMLREG--VRPNMFTYSAVLRACD 186
                            MIS Y      ++AL L   ML++G  ++PN  T  +VL AC 
Sbjct: 267 EDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACA 326

Query: 187 SLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT--RDLVVW 241
               L   R++H     +G   +  V++AL  +YAK   L  A C F+ +    ++L+ W
Sbjct: 327 QSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAW 386

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ------- 294
           N++I  +A +    EA+++++ M RAG   D  T   +L  C+   L++ G         
Sbjct: 387 NTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGT 446

Query: 295 VHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMIS 345
           +H    + +H       ++D+  + G L +A  + S+M +Q     W  +++
Sbjct: 447 IHSVEPRVEH----YACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLA 494


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/525 (40%), Positives = 316/525 (60%), Gaps = 14/525 (2%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE---GVRPNMFTYSAV 181
           ++EA+++FD+M ERNVV+WTTMI+ Y      D A +L   M  +        +  Y+  
Sbjct: 188 VDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLS 247

Query: 182 LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
            R  D+      +            V   +A+I  + ++GE+  A  VF+ M  RD   W
Sbjct: 248 GRIEDAEEFFEVMPM--------KPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATW 299

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
             +I  + +     EAL+L+ +M++ G      +L S+L  C  LA L+ G QVH H+++
Sbjct: 300 RGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVR 359

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
             +D D+ + + L+ MY KCG L  A  VF R   KD+I W+++ISG A +G  +EALK+
Sbjct: 360 CQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKI 419

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F  M  S   PN +T++ +L ACS+AG +E+G   F+SM+  + + P  EHYSC +D+LG
Sbjct: 420 FHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLG 479

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           RAG++ +A++LI  M  +PDA  W ALLGACK H   DLA  AAKK+   +P + GTY+L
Sbjct: 480 RAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVL 539

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD-SSHPQIDKINK 538
           LS+I A+  KW +VA VRK MR   ++K PGCSWIEV K++H F      +HP+   I  
Sbjct: 540 LSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILM 599

Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRK 598
            L+     L   GY+PD ++VL D++ E+K DS+  HSE+LA+ +GL+ L +G  IR+ K
Sbjct: 600 MLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMK 659

Query: 599 NLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           NLR+CGDCH   KL +K+  + I++RD  R+HHF +G CSC DYW
Sbjct: 660 NLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 169/374 (45%), Gaps = 50/374 (13%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N L++ ++K  ++ EA+ +F+ MPERNVVSWT M+  Y    M  +A E L + + E   
Sbjct: 83  NGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEA-ESLFWRMPE--- 138

Query: 173 PNMFTYSAVLRAC--DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
            N  +++ +      D  I   +    ++ V    DV   + +I    + G +  A  +F
Sbjct: 139 RNEVSWTVMFGGLIDDGRIDKARKLYDMMPV---KDVVASTNMIGGLCREGRVDEARLIF 195

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           +EM  R++V W ++I G+ QN+ VD A  L++ M        + + TS+L   T    +E
Sbjct: 196 DEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPE----KTEVSWTSMLLGYTLSGRIE 251

Query: 291 LGTQ-VHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
              +   V  +K    +I  NA++  + + G +  A  VF  M  +D  +W  MI    +
Sbjct: 252 DAEEFFEVMPMK---PVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYER 308

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACS-----------HAGFVE---DGWNHF 395
            G+  EAL LF  M+   ++P++ +++ +L  C+           HA  V    D   + 
Sbjct: 309 KGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYV 368

Query: 396 KSMKKFYGIDPGRE----------------HYSCMIDLLGRAGKLQEAVKLIHEMPYE-- 437
            S+     +  G                   ++ +I      G  +EA+K+ HEMP    
Sbjct: 369 ASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGT 428

Query: 438 -PDAVTWRALLGAC 450
            P+ VT  A+L AC
Sbjct: 429 MPNKVTLIAILTAC 442



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 150/349 (42%), Gaps = 62/349 (17%)

Query: 109 TFLVNILLNMHVKFSLLE------EAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALEL 162
           T+L +  +N   + S L       EA+  FD +  + + SW +++S Y    +  +A +L
Sbjct: 11  TYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQL 70

Query: 163 LIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
              M    V       S  ++  + +I+  +    + ++  E +V   +A++  Y + G 
Sbjct: 71  FDEMSERNVVSWNGLVSGYIK--NRMIVEAR---NVFELMPERNVVSWTAMVKGYMQEGM 125

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           +  AE +F  MP R+ V W  + GG   +  +D+A  LY  M                  
Sbjct: 126 VGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPV---------------- 169

Query: 283 CTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
                                 D++ +  ++   C+ G +++A  +F  M +++V++W+T
Sbjct: 170 ---------------------KDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTT 208

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           MI+G  QN     A KLFE M     +   ++   +L   + +G +ED        ++F+
Sbjct: 209 MITGYRQNNRVDVARKLFEVMP----EKTEVSWTSMLLGYTLSGRIEDA-------EEFF 257

Query: 403 GIDPGREHYSC--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            + P +   +C  MI   G  G++ +A ++   M  + D  TWR ++ A
Sbjct: 258 EVMPMKPVIACNAMIVGFGEVGEISKARRVFDLME-DRDNATWRGMIKA 305



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 99/208 (47%), Gaps = 11/208 (5%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     MQ  GVR    +   ++  C    +++  + VH H++   F+ + ++ ++L+ 
Sbjct: 315 ALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMT 374

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+VK   L +A+++FD+   ++++ W ++IS Y    + ++AL++   M   G  PN  T
Sbjct: 375 MYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVT 434

Query: 178 YSAVLRAC-------DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
             A+L AC       + L I   +     K      V   S  +D+  + G++  A  + 
Sbjct: 435 LIAILTACSYAGKLEEGLEIFESMES---KFCVTPTVEHYSCTVDMLGRAGQVDKAMELI 491

Query: 231 NEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
             M  + D  VW +++G    +S +D A
Sbjct: 492 ESMTIKPDATVWGALLGACKTHSRLDLA 519



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 110/261 (42%), Gaps = 55/261 (21%)

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           I   +++G++  A   F+ +  + +  WNSI+ G+  N    EA  L+  M         
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMS-------- 75

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
                                        + +++  N L+  Y K   + +A +VF  M 
Sbjct: 76  -----------------------------ERNVVSWNGLVSGYIKNRMIVEARNVFELMP 106

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393
           +++V+SW+ M+ G  Q G   EA  LF  M   R + ++  + G        G ++DG  
Sbjct: 107 ERNVVSWTAMVKGYMQEGMVGEAESLFWRMP-ERNEVSWTVMFG--------GLIDDG-- 155

Query: 394 HFKSMKKFYGIDPGREHYSC--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
                +K Y + P ++  +   MI  L R G++ EA +LI +   E + VTW  ++   +
Sbjct: 156 RIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEA-RLIFDEMRERNVVTWTTMITGYR 214

Query: 452 VHRNTDLAICAAKKILNLDPQ 472
            +   D+    A+K+  + P+
Sbjct: 215 QNNRVDV----ARKLFEVMPE 231


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/536 (39%), Positives = 328/536 (61%), Gaps = 6/536 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   G  A    Y   I  C+ R A+ E + VH  +++  + P  FL   L+ M+V+   
Sbjct: 1   MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 60

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L++A+ + D+MPER+VVSWTTMIS Y   + + +AL+L I MLR G  PN +T + VL +
Sbjct: 61  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 120

Query: 185 CD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C    S+   +Q+H  ++K  FES +FV S+L+D+YAK   ++ A  VF+ +P RD+V  
Sbjct: 121 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSC 180

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            +II G+AQ    +EAL+L++++   G   +  T T+++ A +GLA L+ G QVH  +L+
Sbjct: 181 TAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILR 240

Query: 302 YDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
            +      L N+L+DMY KCG L  +  VF  M+++ V+SW+ M+ G  ++G   E + L
Sbjct: 241 KELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISL 300

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F+ +    +KP+ +T++ VL  CSH G V++G + F ++ K         HY C+IDLLG
Sbjct: 301 FKDLH-KEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLG 359

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           R+G+L++A+ LI  MP+E     W +LLGAC+VH N  +    A+K+L ++P++ G Y++
Sbjct: 360 RSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVI 419

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LSNIYA +  W +V +VRK M  + +TKEPG SWI ++K IH F+ ++  HP    IN  
Sbjct: 420 LSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAK 479

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
           +K +   +   G+ PD + VL D++ EQKE  +  HSEKLAI FGLM+   G TIR
Sbjct: 480 IKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIR 535



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 143/342 (41%), Gaps = 51/342 (14%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     +   G++ + VT+  L+       +++  K VH  +L         L N L++
Sbjct: 196 ALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLID 255

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L  ++ +FD M ER+VVSW  M+  Y    +  + + L   + +E V+P+  T
Sbjct: 256 MYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVT 314

Query: 178 YSAVLRACDSLIILRQLHCGIIKVG---FESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             AVL  C         H G++  G   F++ V  +SAL+                    
Sbjct: 315 LLAVLSGCS--------HGGLVDEGLDIFDTVVKEQSALLHTGH---------------- 350

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
                 +  II    ++  +++ALNL + M    F +  S   S+L AC   A + +G  
Sbjct: 351 ------YGCIIDLLGRSGRLEKALNLIENMP---FESTPSIWGSLLGACRVHANVHVGEL 401

Query: 295 VHVHVLKYDHDLILNNALL-DMYCKCGSLEDAMSVFSRMIQKDVI-----SWSTMISGLA 348
           V   +L+ + +   N  +L ++Y   G  +D   V   M++K V      SW  ++  + 
Sbjct: 402 VAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSW-IILDKVI 460

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
              +S E     +    ++IK  ++ I         AGFV D
Sbjct: 461 HTFHSSERFHPSKKDINAKIKEIFVDIKA-------AGFVPD 495


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/591 (36%), Positives = 342/591 (57%), Gaps = 8/591 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLAR-HAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           A+   + M   G++  SV++   I  C A    +   + +H  +   GF+        L+
Sbjct: 119 ALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLV 178

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   LEE+   F+ M E N VSW  MI+A+ + +   +AL  L  M  EG+R    
Sbjct: 179 SMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSV 238

Query: 177 TYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           TY  ++ A D    L   R +H  I++ GF+ DV   + ++++Y K G L++AE +F  M
Sbjct: 239 TYITLMSAYDQPSQLKSARYIHDCILRTGFDQDVV--NVILNMYGKCGCLQDAEAMFKSM 296

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
              D++ WN++I  ++Q+    EAL  Y+ M+  G   D  T  SV+ AC  L  +E+G 
Sbjct: 297 SQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVGK 356

Query: 294 QVHVHVLKYDHDLI-LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           QVH  +      +  L N+L++MY KCG L+ A S+F +   K  ++W+ MI   AQ+ +
Sbjct: 357 QVHRRLGDRAFQVTELANSLVNMYGKCGILDVARSIFDK-TAKGSVTWNAMIGAYAQHSH 415

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            Q+A +LF  M++   +P+YIT + VL AC++AG  E+  ++F  M++ +G+ PG  HY 
Sbjct: 416 EQQAFELFLLMRLDGEEPSYITFMSVLSACANAGLPEEAHSYFVCMQQDHGVRPGGGHYG 475

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           CM++ LG+AG+L +A  LI  MP+EPD +TW + L  C+ H +      AAK  + +DP+
Sbjct: 476 CMVESLGKAGRLSDAEALIQGMPFEPDVLTWTSFLANCRSHGDMKRGKFAAKGAIRIDPE 535

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
               Y+ L+ I+A++  + E + +RK M  RGI K  G S I++   ++ F   D S+P+
Sbjct: 536 ASTGYVALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPR 595

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
             +I   LK L +++   GY PD  +V  D+E  QKE  +  HSE+LAI FG++S +QG 
Sbjct: 596 SKEIFDELKRLDKEMKRAGYDPDMTHVAHDVEAGQKEPLLFAHSERLAIAFGIISTSQGT 655

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +RI KNLR+CGDCH   KLT+K+  + I++RD  R+HHF++G+CSC D+W
Sbjct: 656 PLRIMKNLRVCGDCHAMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKDFW 706



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 121/419 (28%), Positives = 218/419 (52%), Gaps = 11/419 (2%)

Query: 72  ADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVL 131
           AD      +I+ C    A+ E + +H  +   G   + ++ N L+ M+ K   LEEA+++
Sbjct: 32  ADLKECVRVIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLV 91

Query: 132 FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS---- 187
           F+  P +NV SWT +I+       + +AL L   ML++G++P+  +++A + AC +    
Sbjct: 92  FEATPAKNVFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEF 151

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L   R LH  + + GF+  V   ++L+ +Y+K G L  +   F  M   + V WN++I  
Sbjct: 152 LPAGRALHALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAA 211

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI 307
           FA++    EAL   ++M   G  A   T  +++ A    + L+    +H  +L+   D  
Sbjct: 212 FAEHRRGLEALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQD 271

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + N +L+MY KCG L+DA ++F  M Q DVI+W+TMI+  +Q+G++ EAL+ +E M+   
Sbjct: 272 VVNVILNMYGKCGCLQDAEAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEG 331

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
           + P+  T V V+ AC+  G +E G   H +   + + +    E  + ++++ G+ G L  
Sbjct: 332 VVPDDYTYVSVIDACATLGDMEVGKQVHRRLGDRAFQVT---ELANSLVNMYGKCGILDV 388

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           A  +  +      +VTW A++GA   H +   A      ++ LD ++P     +S + A
Sbjct: 389 ARSIFDKTA--KGSVTWNAMIGAYAQHSHEQQAF-ELFLLMRLDGEEPSYITFMSVLSA 444


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/590 (37%), Positives = 352/590 (59%), Gaps = 41/590 (6%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLN-MHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           +  A L HN +L     P   ++N+ L+  +     +  +  LF Q  + ++  +T  I+
Sbjct: 48  IHAAILRHNLLL----HPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAIN 103

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVF 208
                 + D+A  L + +L   + PN FT+S++L++C S    + +H  ++K G   D +
Sbjct: 104 TASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSC-STKSGKLIHTHVLKFGLGIDPY 162

Query: 209 VRSALIDIYAKLGELRNAECVFNEMP-------------------------------TRD 237
           V + L+D+YAK G++ +A+ VF+ MP                                RD
Sbjct: 163 VATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERD 222

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLRACTGLALLELGTQVH 296
           +V WN +I G+AQ+   ++AL L++++   G    D+ T+ + L AC+ +  LE G  +H
Sbjct: 223 IVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIH 282

Query: 297 VHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
           V V   +   ++ +   L+DMY KCGSLE+A+ VF+   +KD+++W+ MI+G A +GYSQ
Sbjct: 283 VFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQ 342

Query: 355 EALKLFESMK-VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
           +AL+LF  M+ ++ ++P  IT +G L AC+HAG V +G   F+SM + YGI P  EHY C
Sbjct: 343 DALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGC 402

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           ++ LLGRAG+L+ A + I  M  + D+V W ++LG+CK+H +  L    A+ ++ L+ ++
Sbjct: 403 LVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKN 462

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQI 533
            G Y+LLSNIYA+   ++ VA+VR  M+ +GI KEPG S IE+  ++H F   D  H + 
Sbjct: 463 SGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKS 522

Query: 534 DKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT 593
            +I   L+ + +++   GY P+TN VLQDLE  +KE S+Q HSE+LAI +GL+S   G  
Sbjct: 523 KEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSP 582

Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           ++I KNLR+C DCHT  KL +K+  + IV+RD  R+HHF DG+CSCGD+W
Sbjct: 583 LKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 142/326 (43%), Gaps = 52/326 (15%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           +  +  T++ L+K C    + +  KL+H HVL  G   + ++   L++++ K   +  AQ
Sbjct: 126 INPNEFTFSSLLKSC----STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQ 181

Query: 130 VLFDQMPE-------------------------------RNVVSWTTMISAYCDAKMNDK 158
            +FD+MPE                               R++VSW  MI  Y      + 
Sbjct: 182 KVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPND 241

Query: 159 ALELLIFMLREG-VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALI 214
           AL L   +L EG  +P+  T  A L AC  +  L   R +H  +       +V V + LI
Sbjct: 242 ALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLI 301

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR-AGFAADQ 273
           D+Y+K G L  A  VFN+ P +D+V WN++I G+A +    +AL L+  M+   G     
Sbjct: 302 DMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTD 361

Query: 274 STLTSVLRACTGLALLELGTQVHVHV-------LKYDHDLILNNALLDMYCKCGSLEDAM 326
            T    L+AC    L+  G ++   +        K +H       L+ +  + G L+ A 
Sbjct: 362 ITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEH----YGCLVSLLGRAGQLKRAY 417

Query: 327 SVFSRM-IQKDVISWSTMISGLAQNG 351
                M +  D + WS+++     +G
Sbjct: 418 ETIKNMNMDADSVLWSSVLGSCKLHG 443



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 10/147 (6%)

Query: 294 QVHVHVLKYDHDL-----ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
           Q+H  +L+++  L     +LN  L   Y   G +  ++++F + I  D+  ++  I+  +
Sbjct: 47  QIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTAS 106

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
            NG   +A  L+  +  S I PN  T   +L +CS          H   +K   GIDP  
Sbjct: 107 INGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTK---SGKLIHTHVLKFGLGIDPYV 163

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMP 435
              + ++D+  + G +  A K+   MP
Sbjct: 164 A--TGLVDVYAKGGDVVSAQKVFDRMP 188


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/551 (39%), Positives = 324/551 (58%), Gaps = 25/551 (4%)

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPE--RNVVSWTTMISAYCDAKMNDKALELL 163
            P+    N LL+ H     +  A+ LF  MP   RNV SW TM+S    +    +A  + 
Sbjct: 79  RPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVF 138

Query: 164 IFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFE--------SDVFVRSALID 215
           + M       N  +++A++ +C +       H G +    E         +  + +A++ 
Sbjct: 139 LAMPAR----NSISWNAMV-SCFA-------HAGDMCAAEECFEDAPDKENAVLWTAMVS 186

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR-AGFAADQS 274
            Y   G +  A   F  MP R LV WN+++ G+ +NS  ++AL ++K M R A    ++S
Sbjct: 187 GYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNES 246

Query: 275 TLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           TL+SVL  C+ L+ L  G QVH     L     +    +L+ MYCKCG L+ A  +FS M
Sbjct: 247 TLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEM 306

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
             +DVI+W+ MISG A +G  +EA++LFE MK   ++PN+IT V VL AC H G  + G 
Sbjct: 307 RIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGM 366

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
             F+ M++ YGI+   +HYSCM+DLL RAG L+ AV LI  MP++P    +  LL A +V
Sbjct: 367 QCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNASRV 426

Query: 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCS 512
           ++N + A  AA K++  +PQ+ G Y+ L+NIYA + +W +V+ VR+ M+   + K PG S
Sbjct: 427 YKNMEFAEFAAGKLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKTPGYS 486

Query: 513 WIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSI 572
           W+E+N  IH F   D  HPQ+  I++ L  L +++  +GY PD ++ L D++   K   +
Sbjct: 487 WVEINGVIHVFRSNDRLHPQLSLIHERLCQLEERMKAMGYVPDLDFALHDVDESLKVQML 546

Query: 573 QYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF 632
             HSEKLAI FGL+S   G T+RI KNLR+CGDCHT AKL +K+E++ I++RD  R+HHF
Sbjct: 547 MRHSEKLAIAFGLLSTAPGITLRIFKNLRVCGDCHTAAKLISKIEDREIILRDTTRFHHF 606

Query: 633 QDGNCSCGDYW 643
           + G+CSCGDYW
Sbjct: 607 RSGHCSCGDYW 617


>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
 gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/599 (38%), Positives = 356/599 (59%), Gaps = 10/599 (1%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE-PETF 110
            R    A++    M  + V  D  T + + K        +EA+  H   +  G E    F
Sbjct: 143 HRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVF 202

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           + + L++M+VKF    EA+++ D++ E++VV  T +I  Y     + +A++    ML E 
Sbjct: 203 VGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEK 262

Query: 171 VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
           V+PN +TY++VL +C +L  +   + +H  ++K GFES +  +++L+ +Y +   + ++ 
Sbjct: 263 VQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSL 322

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
            VF  +   + V W S+I G  QN   + AL  +++M R     +  TL+S LR C+ LA
Sbjct: 323 RVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLA 382

Query: 288 LLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
           + E G Q+H  V KY  D D    + L+D+Y KCG  + A  VF  + + DVIS +TMI 
Sbjct: 383 MFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIY 442

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
             AQNG+ +EAL LFE M    ++PN +T++ VL AC+++  VE+G   F S +K   I 
Sbjct: 443 SYAQNGFGREALDLFERMINLGLQPNDVTVLSVLLACNNSRLVEEGCELFDSFRK-DKIM 501

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
              +HY+CM+DLLGRAG+L+EA  L  E+   PD V WR LL ACKVHR  ++A    +K
Sbjct: 502 LTNDHYACMVDLLGRAGRLEEAEMLTTEV-INPDLVLWRTLLSACKVHRKVEMAERITRK 560

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
           IL ++P D GT IL+SN+YA++ KW+ V E++  M+   + K P  SW+E+NK+ H F  
Sbjct: 561 ILEIEPGDEGTLILMSNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHTFMA 620

Query: 526 AD-SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFG 584
            D  SHP  ++I ++L+ LI+K   +GY  D + V QD+E   KE S+  HSEKLAI F 
Sbjct: 621 GDLFSHPNSEQILENLEELIKKSKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFA 680

Query: 585 LMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +     G +IRI KNLR+C DCH++ K+ +++  + I+ RD  R+HHF+DG+CSCGDYW
Sbjct: 681 VWR-NVGGSIRILKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDGSCSCGDYW 738



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 121/437 (27%), Positives = 228/437 (52%), Gaps = 12/437 (2%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           +++L++ C+   ++   K +  H+L  GF P     + L++  +K   ++ A+ +FD M 
Sbjct: 68  FSQLLRQCIDERSISGIKTIQAHMLKSGF-PAEISGSKLVDASLKCGDIDYARQVFDGMS 126

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQL-- 194
           ER++V+W ++I+     + + +A+E+   M+   V P+ +T S+V +A   L + ++   
Sbjct: 127 ERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEAQR 186

Query: 195 -HCGIIKVGFE-SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            H   + +G E S+VFV SAL+D+Y K G+ R A+ V + +  +D+V+  ++I G++Q  
Sbjct: 187 SHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKG 246

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNN 310
           +  EA+  ++ M       ++ T  SVL +C  L  +  G  +H  ++K  ++  L    
Sbjct: 247 EDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQT 306

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           +LL MY +C  ++D++ VF  +   + +SW+++ISGL QNG  + AL  F  M    IKP
Sbjct: 307 SLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKP 366

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           N  T+   L  CS+    E+G      +   YG D  +   S +IDL G+ G   +  +L
Sbjct: 367 NSFTLSSALRGCSNLAMFEEG-RQIHGIVTKYGFDRDKYAGSGLIDLYGKCG-CSDMARL 424

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA--NSQ 488
           + +   E D ++   ++ +   +     A+   ++++NL  Q P    +LS + A  NS+
Sbjct: 425 VFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMINLGLQ-PNDVTVLSVLLACNNSR 483

Query: 489 KWDEVAEVRKTMRARGI 505
             +E  E+  + R   I
Sbjct: 484 LVEEGCELFDSFRKDKI 500


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/643 (35%), Positives = 340/643 (52%), Gaps = 37/643 (5%)

Query: 38  NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVH 97
           ++  LL+   R C       A+     M   G   D+ T+  L+K      +    + VH
Sbjct: 7   HARRLLEGIPRRCLVAAREDAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVH 66

Query: 98  NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND 157
            HV+  G      +   L+  +        A+ L  +      V W  +IS +   +   
Sbjct: 67  AHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFG 126

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRACDS----LIILRQLHCGIIKVGFESDVFVRSAL 213
           +A    + M R G  P   TY +VL AC      +++  Q+H  ++  G   D+ V +AL
Sbjct: 127 EACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENAL 186

Query: 214 IDIYA-------------------------------KLGELRNAECVFNEMPTRDLVVWN 242
           +D+YA                               +LG +  A  +F  MP RD V W 
Sbjct: 187 VDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWT 246

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK- 301
           ++I G+ Q +   EAL +++ M+ +  +AD+ T+ SV+ AC  L  LE+G  V V++ + 
Sbjct: 247 AMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQ 306

Query: 302 -YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
               D  + NAL+DMY KCGS+E A+ VF  M  +D  +W+ +I GLA NGY +EA+++F
Sbjct: 307 GIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMF 366

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420
             M      P+ +T +GVL AC+HAG V+ G   F SM++ Y I P   HY C+IDL GR
Sbjct: 367 HRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGR 426

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480
           AGK+ EA+  I +MP  P++  W  LL AC+VH N+++     +++L +DP++   Y LL
Sbjct: 427 AGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLL 486

Query: 481 SNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHL 540
           SNIYA   +W++V  +R T+  +GI KEPGCS IE+N  IH F   D SHP   +I   L
Sbjct: 487 SNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIYCKL 546

Query: 541 KHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNL 600
           + +I  L  VGY PD   V  ++  E+K+  + +HSEKLAI F L+S      IRI KNL
Sbjct: 547 ESIINDLNNVGYFPDVTEVFVEVAEEEKQKVLFWHSEKLAIAFALLSSEPNTVIRIVKNL 606

Query: 601 RICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           R+C DCH   KL +++  + +V+RD  R+HHF+ G CSC DYW
Sbjct: 607 RMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 649


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/592 (35%), Positives = 347/592 (58%), Gaps = 7/592 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     MQ  G + D V+   +I        +     VH + +  G +    + N L++
Sbjct: 336 AINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLID 395

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   ++     F+ MPE++++SWTT+I+ Y   + +  AL LL  +  E +  +   
Sbjct: 396 MYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMM 455

Query: 178 YSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             ++L AC  L    +++++H  ++K G  +D+ +++A++++Y +L  +  A  VF  + 
Sbjct: 456 IGSILLACSGLKSEKLIKEIHGYVLKGGL-ADILIQNAIVNVYGELALVDYARHVFESIN 514

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
           ++D+V W S+I     N    EAL L+  +       D  TL SVL A   L+ L+ G +
Sbjct: 515 SKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKE 574

Query: 295 VHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  +++    L  ++ N+L+DMY +CG++E+A ++F+ + Q+D+I W++MI+    +G 
Sbjct: 575 IHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGC 634

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            ++A+ LF  M    + P++IT + +L+ACSH+G V +G  HF+ MK  Y ++P  EHY+
Sbjct: 635 GKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYA 694

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
           C++DLL R+  L+EA   +  MP EP A  W ALLGAC++H N DL   AAKK+L L+ +
Sbjct: 695 CLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTE 754

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           + G Y+L+SN +A   +W++V EVR  M+   + K+PGCSWIEV  +IH F   D SHPQ
Sbjct: 755 NSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQ 814

Query: 533 IDKINKHLKHLIQKLV-GVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
            + I   L    + L    GY   T  V  D+  E+K   +  HSE+LA+ +GL+  ++G
Sbjct: 815 CNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEKTQMLYGHSERLALGYGLLVTSKG 874

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             +RI KNLRIC DCH F K+ +++  +T+V+RD  R+HHF+ G CSCGD+W
Sbjct: 875 TCLRITKNLRICDDCHAFFKIASEISQRTLVVRDASRFHHFERGLCSCGDFW 926



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 134/466 (28%), Positives = 233/466 (50%), Gaps = 24/466 (5%)

Query: 27  PPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLA 86
           PP  +  T +    SL + F    +    P        +Q          Y++ ++ C +
Sbjct: 7   PPNHTLPTFSHRPISLKEAFQSLTHFFTDPLPTTTRFPLQ--------QAYSQALELCAS 58

Query: 87  RHAVEEAKLVHNHVL-SGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTT 145
             A+ + + +H H L +  +    FL    ++M+ K     +A  +FD+M ER + +W  
Sbjct: 59  HKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNA 118

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVG 202
           MI A   A    +A+EL   M   GV  + FT+  VL+AC +    R   ++H   +K G
Sbjct: 119 MIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCG 178

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNE--MPTRDLVVWNSIIGGFAQNSDVDEALNL 260
           +   VFV +ALI +YAK G+L  A  +F+   M   D V WNSII       +  EAL+L
Sbjct: 179 YGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSL 238

Query: 261 YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCK 318
           ++RM+  G  ++  T  S L+AC G   +++G  +H  +LK +H  D+ ++NAL+ MY  
Sbjct: 239 FRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYAN 298

Query: 319 CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
           CG +EDA  VF  M+ KD +SW+T++SG+ QN    +A+  F+ M+ S  KP+ ++++ +
Sbjct: 299 CGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNM 358

Query: 379 LFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           + A   +  +  G   H  ++K  +GID      + +ID+ G+   ++        MP E
Sbjct: 359 IAASGRSANLLAGMEVHAYAIK--HGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMP-E 415

Query: 438 PDAVTWRALLGACKVHRNTDLAICAAKKI----LNLDPQDPGTYIL 479
            D ++W  ++     +     A+   +K+    +++DP   G+ +L
Sbjct: 416 KDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILL 461



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 133/443 (30%), Positives = 230/443 (51%), Gaps = 25/443 (5%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
            A++    M+  GV  D+ T+  ++K C A         +H   +  G+    F+ N L+
Sbjct: 131 EAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALI 190

Query: 117 NMHVKFSLLEEAQVLFDQ--MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
            M+ K   L  A+VLFD   M + + VSW ++ISA+     + +AL L   M   GV  N
Sbjct: 191 AMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESN 250

Query: 175 MFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
            +T+ + L+AC+    + I R +H  I+K    +DV+V +ALI +YA  G++ +AE VF 
Sbjct: 251 TYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFK 310

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
            M  +D V WN+++ G  QN    +A+N ++ M+ +G   DQ ++ +++ A    A L  
Sbjct: 311 SMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLA 370

Query: 292 GTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G +VH + +K+  D ++ + N+L+DMY KC  ++   S F  M +KD+ISW+T+I+G AQ
Sbjct: 371 GMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQ 430

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG--IDPG 407
           N    +AL L   +++ ++  + + I  +L ACS       G    K +K+ +G  +  G
Sbjct: 431 NECHLDALNLLRKVQLEKMDVDPMMIGSILLACS-------GLKSEKLIKEIHGYVLKGG 483

Query: 408 REHY---SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAK 464
                  + ++++ G    L +  + + E     D V+W +++  C VH    LAI A +
Sbjct: 484 LADILIQNAIVNVYGELA-LVDYARHVFESINSKDIVSWTSMITCC-VHNG--LAIEALE 539

Query: 465 KILNLDPQ--DPGTYILLSNIYA 485
              +L     +P    L+S +YA
Sbjct: 540 LFNSLIETNIEPDLITLVSVLYA 562


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/529 (41%), Positives = 318/529 (60%), Gaps = 14/529 (2%)

Query: 127 EAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR------PNMFTYSA 180
           +A+  FD++P+ N V  T M S Y    +   +LEL   M+             +  +SA
Sbjct: 2   DARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSA 61

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLG--ELRNAECVFNEMPTRDL 238
             R  D  +    LH  I K+GFE +  V + ++D YAK G  +L  A  VF+ M  RD+
Sbjct: 62  SARVPDRGVTA-SLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDV 119

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKR--AGFAADQSTLTSVLRACTGLALLELGTQVH 296
           V WNS+I  +AQN    EA+ LY +M     G   +   L++VL AC     ++ G  +H
Sbjct: 120 VSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIH 179

Query: 297 VHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
             V++   + ++ +  +++DMY KCG +E A   F ++ +K+++SWS MI+G   +G  Q
Sbjct: 180 NQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQ 239

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414
           EAL++F  MK S ++PNYIT + VL ACSHAG +++G   + +MK+ +GI+ G EHY CM
Sbjct: 240 EALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCM 299

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474
           +DLLGRAG L EA  LI EM  +PDA  W ALL AC++H+N +LA  + K++  LD  + 
Sbjct: 300 VDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNS 359

Query: 475 GTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQID 534
           G Y+LLSNIYA +  W +V  +R  ++ R I K PG S  E+  +I+ F V D SHPQ  
Sbjct: 360 GYYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHI 419

Query: 535 KINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTI 594
           +I  +L+ L++++   GY P+T  VL DL+ E+KE +++ HSEKLA+ F LM+      I
Sbjct: 420 EIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVI 479

Query: 595 RIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            I KNLR+C DCHT  K   K+  + I+IRD  R+HHF+DG CSC DYW
Sbjct: 480 HIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 101/209 (48%), Gaps = 21/209 (10%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G++ ++V  + ++  C    A++  K +HN V+  G E   ++   +++M+ K   +E A
Sbjct: 151 GIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMA 210

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
              F ++ E+N++SW+ MI+ Y       +ALE+   M R G+RPN  T+ +VL AC   
Sbjct: 211 SRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACS-- 268

Query: 189 IILRQLHCGII------------KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
                 H G++            + G E+ V     ++D+  + G L  A  +  EM  +
Sbjct: 269 ------HAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVK 322

Query: 237 -DLVVWNSIIGGFAQNSDVDEALNLYKRM 264
            D  +W +++     + +V+ A    KR+
Sbjct: 323 PDAAIWGALLSACRIHKNVELAEMSVKRL 351


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/551 (39%), Positives = 320/551 (58%), Gaps = 39/551 (7%)

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF--MLREGVRPNMFTYSAVLRACDSL 188
           LF  +P  +   + T+  A+        +L LL +  ML+  V PN FT+ +++RAC   
Sbjct: 58  LFTTLPNPDTFLYNTLFKAFFSLSQT-PSLSLLFYSHMLQHCVTPNAFTFPSLIRACKLE 116

Query: 189 IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
              +QLH  ++K GF  D +  + LI +Y   G L +A  VF  M   ++V W S++ G+
Sbjct: 117 EEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGY 176

Query: 249 AQNSDVDEALNLYKRMK---------------------RAGFAA------------DQST 275
           +Q   VDEA  +++ M                      R  FA             D+  
Sbjct: 177 SQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFV 236

Query: 276 LTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
             ++L ACTG+  LE G  +H +V K     D  L   ++DMYCKCG L+ A  VF  + 
Sbjct: 237 AATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLK 296

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKV-SRIKPNYITIVGVLFACSHAGFVEDGW 392
            K V SW+ MI G A +G  ++A++LF+ M+  + + P+ IT V VL AC+H+G VE+GW
Sbjct: 297 VKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGW 356

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
            +F+ M   +GIDP +EHY CM+DLL RAG+L+EA K+I EMP  PDA    ALLGAC++
Sbjct: 357 YYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRI 416

Query: 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCS 512
           H N +L      +++ LDP++ G Y++L N+YA+  KW++VA VRK M  RG+ KEPG S
Sbjct: 417 HGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFS 476

Query: 513 WIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSI 572
            IE+   ++ F      HP  + I   +  +++ +  VG+ PDT+ VL DL  E++E+ +
Sbjct: 477 MIEMEGVVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEEERENPL 536

Query: 573 QYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF 632
            YHSEKLAI +GL+   +G+T+R+ KNLR+C DCH  +K+ +K+ +  I+IRD  R+HHF
Sbjct: 537 FYHSEKLAIAYGLLKTKRGETLRVTKNLRVCKDCHQASKMISKVYDCDIIIRDRSRFHHF 596

Query: 633 QDGNCSCGDYW 643
            +G CSC DYW
Sbjct: 597 SNGECSCKDYW 607



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 44/310 (14%)

Query: 63  HAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF 122
           H +Q H V  ++ T+  LI+ C      EEAK +H HVL  GF  +T+ +N L++++  F
Sbjct: 93  HMLQ-HCVTPNAFTFPSLIRACKLE---EEAKQLHAHVLKFGFGGDTYALNNLIHVYFAF 148

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM---------------- 166
             L++A+ +F  M + NVVSWT+++S Y    + D+A  +   M                
Sbjct: 149 GSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACF 208

Query: 167 -----LREG------------VRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESD 206
                 RE             +  + F  + +L AC  +  L Q   +H  + K G   D
Sbjct: 209 VKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLD 268

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-K 265
             + + +ID+Y K G L  A  VF  +  + +  WN +IGGFA +   ++A+ L+K M +
Sbjct: 269 SKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEE 328

Query: 266 RAGFAADQSTLTSVLRACTGLALLELG---TQVHVHVLKYDHDLILNNALLDMYCKCGSL 322
            A  A D  T  +VL AC    L+E G    +  V V   D        ++D+  + G L
Sbjct: 329 EAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRL 388

Query: 323 EDAMSVFSRM 332
           E+A  V   M
Sbjct: 389 EEAKKVIDEM 398


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/603 (38%), Positives = 340/603 (56%), Gaps = 47/603 (7%)

Query: 48  RFCYQRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           + C + + P +A+   + M     R +  TY  ++K C     V E   VH H++  G  
Sbjct: 111 KVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLG 170

Query: 107 PETFLVNILLNMHVKFSLLEEAQ-VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
            +  +++  + M+  F  L EA+ +L D+  E + V W  MI  Y      + A EL   
Sbjct: 171 GDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELF-- 228

Query: 166 MLREGV--RPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
              EG+  R  + T++A++             CG+++V  E                   
Sbjct: 229 ---EGMPDRSMISTWNAMISGFS--------RCGMVEVARE------------------- 258

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
                 F+EM  RD + W+++I G+ Q     EAL ++ +M++      +  L SVL AC
Sbjct: 259 -----FFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSAC 313

Query: 284 TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
             L  L+ G  +H +  +     D +L  +L+DMY KCG ++ A  VF +M  K+V SW+
Sbjct: 314 ANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWN 373

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
            MI GLA +G +++A+ LF  M    I PN IT VGVL AC+H G V+ G   F SM+K 
Sbjct: 374 AMIGGLAMHGRAEDAIDLFSKMD---IYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKE 430

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
           YG++P  EHY C++DLLGRAG L EA K++  +P EP    W ALLGAC+ H N +L   
Sbjct: 431 YGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGER 490

Query: 462 AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNK-QI 520
             K +L L+PQ+ G Y LLSNIYA + +W+EV EVRK M+ RGI   PG S I++ + ++
Sbjct: 491 VGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEV 550

Query: 521 HAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLA 580
           H F + D SHPQ+  I + L  + ++L   GY PD + VL D++ E+KE ++  HSEKLA
Sbjct: 551 HKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLA 610

Query: 581 IVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
           I FGL++ + G TIRI KNLR+C DCH+  KL +++ N+ I++RD IRYHHF++G CSC 
Sbjct: 611 IGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCK 670

Query: 641 DYW 643
           D+W
Sbjct: 671 DFW 673



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 149/346 (43%), Gaps = 75/346 (21%)

Query: 187 SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR-----NAECVFNEMPTRDLVVW 241
           SL  L+Q H  I++ G   D ++  +L+  YA +   R     ++  VF+ +   ++ +W
Sbjct: 47  SLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLW 106

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N +I    +N++  +A+ LY  M  A    ++ T  +VL+AC+   ++  G QVH H++K
Sbjct: 107 NCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVK 166

Query: 302 Y----------------------------------DHDLILNNALLDMY----------- 316
           +                                  + D +  NA++D Y           
Sbjct: 167 HGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARE 226

Query: 317 ---------------------CKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
                                 +CG +E A   F  M ++D ISWS MI G  Q G   E
Sbjct: 227 LFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFME 286

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCM 414
           AL++F  M+  +I+P    +  VL AC++ G ++ G W H  + +    +D      + +
Sbjct: 287 ALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLG--TSL 344

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           +D+  + G++  A ++  +M    +  +W A++G   +H   + AI
Sbjct: 345 VDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAEDAI 389



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 82/190 (43%), Gaps = 16/190 (8%)

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSL---------- 322
            ST TS L     L LL       +H LK  H LIL    L      GSL          
Sbjct: 24  HSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTN 83

Query: 323 -----EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
                E ++ VF  + + +V  W+ MI    +N    +A+ L+  M V+  +PN  T   
Sbjct: 84  RYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPA 143

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           VL ACS +G V +G      + K +G+       S  I +    G+L EA +++ +   E
Sbjct: 144 VLKACSDSGVVAEGVQVHAHLVK-HGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGE 202

Query: 438 PDAVTWRALL 447
            DAV W A++
Sbjct: 203 VDAVCWNAMI 212


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/543 (41%), Positives = 317/543 (58%), Gaps = 42/543 (7%)

Query: 104 GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL 163
           GF   T   N  +  +     + +A+ +FD MP R+ VS+ +MI  Y  +     A  L 
Sbjct: 41  GFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLF 100

Query: 164 IFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
             +L     P   T+++++                                  + + G++
Sbjct: 101 ERVLA----PTPVTWTSMVAG--------------------------------FCRAGDV 124

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
            +A  VF EMP RDLV WN++I G   N    EAL L++ M   GF  ++ T+ SVL AC
Sbjct: 125 ESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSAC 184

Query: 284 TGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
           TG   LE G  VHV V K     D  L  AL+DMY KCG++E A+ VF+ +  ++  +W+
Sbjct: 185 TGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWN 244

Query: 342 TMISGLAQNGYSQEALKLFESMKVS-RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400
            MI+GLA NGYS +AL +F  M+++  + P+ +T VGVL ACSHAGFV+ G  HF ++ +
Sbjct: 245 AMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQ 304

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
            YG++   EHY+CM+DLL R+G LQEA KLI EMP +PD V WRALLG C++H+N  +A 
Sbjct: 305 KYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMA- 363

Query: 461 CAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQI 520
                I  ++    G ++LLSN+YA   +W+ V +VR+TMR++GI K PGCS +E++  I
Sbjct: 364 --ENVISEMEATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGIEKIPGCSSVEMDGSI 421

Query: 521 HAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLA 580
           H F   D SHP  D I+  L  +  ++   GY  +T  V  D+E E+KE ++ YHSEKLA
Sbjct: 422 HEFISGDKSHPSYDDIHAKLIEIGGRMQQHGYVTETAEVFYDIEDEEKEQALGYHSEKLA 481

Query: 581 IVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
           I FGL+      TIRI KNLR C DCH+FAKL +K+ ++ IV+RD  R+HHF+ G CSC 
Sbjct: 482 IAFGLIGGPPEATIRIVKNLRFCTDCHSFAKLVSKIYHREIVVRDRARFHHFRGGACSCN 541

Query: 641 DYW 643
           D+W
Sbjct: 542 DFW 544



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 115/258 (44%), Gaps = 41/258 (15%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           L  LH    K+GF       +A I  Y   G + +A  VF+ MP RD V +NS+I G+A 
Sbjct: 30  LPSLHAVCTKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAV 89

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNN 310
           + DV  A  L++R+     A    T TS++                              
Sbjct: 90  SGDVGSAQRLFERV----LAPTPVTWTSMVAG---------------------------- 117

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
                +C+ G +E A  VF  M ++D++SW+ MISG   N    EAL LF  M      P
Sbjct: 118 -----FCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVP 172

Query: 371 NYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           N  T+V VL AC+ AG +E G W H    KK    D      + ++D+  + G ++ A++
Sbjct: 173 NRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLG--TALVDMYAKCGAVELALE 230

Query: 430 LIHEMPYEPDAVTWRALL 447
           +   +    +  TW A++
Sbjct: 231 VFTGLRAR-NTCTWNAMI 247



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 108/240 (45%), Gaps = 8/240 (3%)

Query: 50  CYQRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           C    LP  A+     M   G   +  T   ++  C    A+E  K VH  V       +
Sbjct: 149 CVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWD 208

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            FL   L++M+ K   +E A  +F  +  RN  +W  MI+       + KAL++   M  
Sbjct: 209 EFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMEL 268

Query: 169 EG-VRPNMFTYSAVLRACD--SLIILRQLHCGII--KVGFESDVFVRSALIDIYAKLGEL 223
            G V P+  T+  VL AC     +   + H   I  K G E  +   + ++D+ A+ G L
Sbjct: 269 NGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHL 328

Query: 224 RNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           + A  +  EMP + D+VVW +++GG   + +V  A N+   M+ A  + D   L+++  A
Sbjct: 329 QEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENVISEME-ATCSGDHVLLSNLYAA 387


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/601 (37%), Positives = 334/601 (55%), Gaps = 41/601 (6%)

Query: 84  CLAR-HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS---LLEEAQVLFDQMPERN 139
           CL R    EE K +H  +L  G   +++ +   L+  +  +    L  AQ++FD     +
Sbjct: 20  CLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPD 79

Query: 140 VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHC 196
              W  MI  +  +   +++L L   ML      N +T+ ++L+AC +L       Q+H 
Sbjct: 80  TFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHA 139

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD- 255
            I K+G+E+DV+  ++LI+ YA  G  + A  +F+ +P  D V WNS+I G+ +   +D 
Sbjct: 140 QITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDI 199

Query: 256 ------------------------------EALNLYKRMKRAGFAADQSTLTSVLRACTG 285
                                         EAL L+  M+ +    D  +L + L AC  
Sbjct: 200 ALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQ 259

Query: 286 LALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L  LE G  +H ++ K     D +L   L+DMY KCG +E+A+ VF  + +K V +W+ +
Sbjct: 260 LGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTAL 319

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           ISG A +G+ +EA+  F  M+   IKPN IT   VL ACS+ G VE+G   F SM++ Y 
Sbjct: 320 ISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYN 379

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           + P  EHY C++DLLGRAG L EA + I EMP +P+AV W ALL AC++H+N +L     
Sbjct: 380 LKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIG 439

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
           + ++ +DP   G Y+  +NI+A  +KWD+ AE R+ M+ +G+ K PGCS I +    H F
Sbjct: 440 EILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEF 499

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDL-EGEQKEDSIQYHSEKLAIV 582
              D SHP+I+KI    + + +KL   GY P+   +L DL + +++E  +  HSEKLAI 
Sbjct: 500 LAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAIT 559

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           +GL+    G  IRI KNLR+C DCH   KL +K+  + IV+RD  R+HHF+DG CSCGDY
Sbjct: 560 YGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDY 619

Query: 643 W 643
           W
Sbjct: 620 W 620



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 155/325 (47%), Gaps = 42/325 (12%)

Query: 174 NMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE---LRNAECVF 230
           N++   + L+ C     L+Q+H  ++K G   D +  +  +           L  A+ VF
Sbjct: 13  NLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVF 72

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           +     D  +WN +I GF+ + + + +L LY+RM  +    +  T  S+L+AC+ L+  E
Sbjct: 73  DGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFE 132

Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYC------------------------------- 317
             TQ+H  + K  Y++D+   N+L++ Y                                
Sbjct: 133 ETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYV 192

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           K G ++ A+++F +M +K+ ISW+TMISG  Q   ++EAL+LF  M+ S ++P+ +++  
Sbjct: 193 KAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLAN 252

Query: 378 VLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSC-MIDLLGRAGKLQEAVKLIHEMP 435
            L AC+  G +E G W H    K    +D       C +ID+  + G+++EA+++   + 
Sbjct: 253 ALSACAQLGALEQGKWIHSYLNKTRIRMDSV---LGCVLIDMYAKCGEMEEALEVFKNIK 309

Query: 436 YEPDAVTWRALLGACKVHRNTDLAI 460
            +     W AL+     H +   AI
Sbjct: 310 -KKSVQAWTALISGYAYHGHGREAI 333


>gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa]
 gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa]
          Length = 908

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/602 (37%), Positives = 349/602 (57%), Gaps = 8/602 (1%)

Query: 50  CYQRD--LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           CY +D     A+K +  M      A+ VT+   +  C       E K++H  V+  G   
Sbjct: 307 CYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVIHVGLHE 366

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
              + N L+ ++ K  L+ EA+ +F  MP+R+ V+W  +I  + D++  D+AL+    M 
Sbjct: 367 NVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLMR 426

Query: 168 REGVRPNMFTYSAVLRAC----DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
            EGV  N  T S VL AC    D L     +H  II  GF+SD +V+++LI +YAK G+L
Sbjct: 427 EEGVPINYITISNVLGACLAPNDLLEHGMPIHAFIILTGFQSDEYVQNSLITMYAKCGDL 486

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
            ++  +F+ + +++   WN+++   A +  ++EAL     M+RAG   D+ + +  L A 
Sbjct: 487 NSSNNIFDRLTSKNASAWNAMMAANAHHGHMEEALKFLLEMRRAGVNVDEFSFSECLAAA 546

Query: 284 TGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
             LA+LE G Q+H   +K   D +  + +A +DMY KCG ++D + +  R I +  +SW+
Sbjct: 547 AKLAILEEGQQLHGLAVKLGCDSNPFVASATMDMYGKCGEIDDVLRIIPRPINRSRLSWN 606

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
            + S  +++G+ ++A + F  M    +KP+++T V +L ACSH G VE+G  ++ SM K 
Sbjct: 607 ILTSSFSRHGFFEKAKETFHEMINLGVKPDHVTFVSLLSACSHGGMVEEGLAYYDSMIKE 666

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
           +GI     H  C+IDLLGR+G+  EA   I EMP  P    WR+LL ACK H N +L   
Sbjct: 667 FGIPAKIGHCVCIIDLLGRSGRFAEAETFIKEMPVSPTDHVWRSLLAACKTHGNLELGRK 726

Query: 462 AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIH 521
           A + +L LDP D   Y+L SNI A + KW++V ++R+ M    I K+P CSW+++  ++ 
Sbjct: 727 AVENLLKLDPSDDSAYVLYSNICATTGKWEDVEKIRRQMGLNKIKKKPACSWVKLKNKLS 786

Query: 522 AFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAI 581
            F + D SHPQ  +I   L+ L + +   GY PD +Y LQD + EQKE ++  HSE+LA+
Sbjct: 787 LFGMGDHSHPQASEIYAKLEELKKMIKEAGYIPDISYALQDTDEEQKEHNLWNHSERLAL 846

Query: 582 VFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641
            +GL+S  +G T++I KNLR+CGDCH+  K  + +  + IV+RDP R+H F  G CSC D
Sbjct: 847 AYGLISSPEGSTLKIFKNLRVCGDCHSVYKFASGILGRKIVLRDPYRFHQFSGGQCSCTD 906

Query: 642 YW 643
           YW
Sbjct: 907 YW 908



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/433 (30%), Positives = 219/433 (50%), Gaps = 10/433 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCC-LARHAVEEAKLVHNHVLSGGFEPETFLVNIL 115
            +M+  + M+  GV+   +  A L+  C  +   + E   VH  ++  G   + F+   L
Sbjct: 12  ESMRFFNEMRDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKVGLLSDVFVGTSL 71

Query: 116 LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
           ++++  + L  +A  +F +M  +NVVSWT ++ AY D       + +   M  EG+  N 
Sbjct: 72  VHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYRRMRSEGMSCND 131

Query: 176 FTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
            T S+V+  C SL   ++  Q+   +IK G E++V V ++LI ++   G +  A  VF+ 
Sbjct: 132 NTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFGSVEEACYVFSG 191

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           M   D + WNS+I  + +N    E+L  +  M R     + +TL+++L  C  +  L+ G
Sbjct: 192 MDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAGCGSVDNLKWG 251

Query: 293 TQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
             +H  VLK+  + ++  +N L+ MY   G  EDA  VF  M++KD+ISW++M++  AQ+
Sbjct: 252 RGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMMACYAQD 311

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
           G   +ALKL  +M   R   NY+T    L ACS   F  +G     ++    G+      
Sbjct: 312 GNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEG-KILHALVIHVGLHENVIV 370

Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
            + ++ L  ++G + EA K+   MP + D VTW AL+G        D A+ A K  L  +
Sbjct: 371 GNALVTLYAKSGLMIEAKKVFQTMP-KRDGVTWNALIGGHADSEEPDEALKAFK--LMRE 427

Query: 471 PQDPGTYILLSNI 483
              P  YI +SN+
Sbjct: 428 EGVPINYITISNV 440



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 95/209 (45%), Gaps = 7/209 (3%)

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC--TGLALLELGTQVHVHVLKY 302
           + GF +     E++  +  M+  G       + S++ AC  +   L+E G QVH  ++K 
Sbjct: 1   MSGFVRAGSYRESMRFFNEMRDFGVKPSGIAVASLVTACERSEWMLIE-GVQVHGFIVKV 59

Query: 303 D--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLF 360
               D+ +  +L+ +Y   G   DAM VF  MI K+V+SW+ ++      G     + ++
Sbjct: 60  GLLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIY 119

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420
             M+   +  N  T+  V+  C        G+     + K YG++      + +I + G 
Sbjct: 120 RRMRSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIK-YGLETNVSVANSLISMFGY 178

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            G ++EA  +   M  E D ++W +++ A
Sbjct: 179 FGSVEEACYVFSGMD-EHDTISWNSMIAA 206


>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
          Length = 686

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/588 (37%), Positives = 342/588 (58%), Gaps = 50/588 (8%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
           AK +H H++  G      L N L+N++ K      A  +FD+MP R+ ++W ++++A   
Sbjct: 90  AKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQ 149

Query: 153 AKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVF 208
           A ++ K L +   +     +RP+ F +SA+++AC +L  +   RQ+HC  I   + +D  
Sbjct: 150 ANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEV 209

Query: 209 VRSALIDIYAKLGELRNAECVFNE-------------------------------MPTRD 237
           V+S+L+D+YAK G L +A+ VF+                                +P ++
Sbjct: 210 VKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKN 269

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF-AADQSTLTSVLRACTGLALLELGTQVH 296
           L  W ++I GF Q+    EA +++  M+R      D   L+S++ AC  LA    G QVH
Sbjct: 270 LYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVH 329

Query: 297 VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
                        NAL+DMY KC  +  A  +FSRM  +DV+SW+++I G+AQ+G +++A
Sbjct: 330 ------------GNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKA 377

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           L L++ M    +KPN +T VG+++ACSH GFVE G   F+SM K YGI P  +HY+C++D
Sbjct: 378 LALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLD 437

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL-NLDPQDPG 475
           LLGR+G L EA  LIH MP+ PD  TW ALL ACK      + I  A  ++ +   +DP 
Sbjct: 438 LLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPS 497

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
           TYILLSNIYA++  W +V+E R+ +    + K+PG S +EV K+   F   ++SHP  + 
Sbjct: 498 TYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKED 557

Query: 536 INKHLKHLIQKL-VGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTI 594
           I + LK L +++ +  GY PDT+++L D++ ++KE  + +HSE+ A+ +GL+    G  I
Sbjct: 558 IFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPI 617

Query: 595 RIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           RI KNLR+CGDCH   K  +++  + I++RD  RYHHF+ G CSC D+
Sbjct: 618 RIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDF 665



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 164/350 (46%), Gaps = 32/350 (9%)

Query: 163 LIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
            IFM +  V  +  +Y +  R   +L   + LH  I+K+G      + + L+++Y K G 
Sbjct: 64  FIFMFKLFVFFDFGSYFS--RMNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGA 121

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEAL-NLYKRMKRAGFAADQSTLTSVLR 281
             +A  VF+EMP RD + W S++    Q +   + L         +G   D    +++++
Sbjct: 122 ASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVK 181

Query: 282 ACTGLALLELGTQVHVH--VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
           AC  L  ++ G QVH H  V +Y +D ++ ++L+DMY KCG L  A +VF  +  K+ IS
Sbjct: 182 ACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTIS 241

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           W+ M+SG A++G  +EAL+LF  + V  +      I G  F  S  G   + ++ F  M+
Sbjct: 242 WTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISG--FVQSGKGL--EAFSVFTEMR 297

Query: 400 --KFYGIDP------------------GRE-HYSCMIDLLGRAGKLQEAVKLIHEMPYEP 438
             +   +DP                  GR+ H + +ID+  +   +  A  +   M +  
Sbjct: 298 RERVDILDPLVLSSIVGACANLAASIAGRQVHGNALIDMYAKCSDVIAAKDIFSRMRHR- 356

Query: 439 DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
           D V+W +L+     H   + A+     +++   + P     +  IYA S 
Sbjct: 357 DVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVK-PNEVTFVGLIYACSH 405



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 170/371 (45%), Gaps = 40/371 (10%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           +R D   ++ L+K C    +++  + VH H +   +  +  + + L++M+ K  LL  A+
Sbjct: 169 LRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAK 228

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL------- 182
            +FD +  +N +SWT M+S Y  +   ++ALEL   +  +    N+++++A++       
Sbjct: 229 AVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVK----NLYSWTALISGFVQSG 284

Query: 183 RACDSLIILRQLH------------------CGIIKVGFESDVFVRSALIDIYAKLGELR 224
           +  ++  +  ++                   C  +           +ALID+YAK  ++ 
Sbjct: 285 KGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGNALIDMYAKCSDVI 344

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
            A+ +F+ M  RD+V W S+I G AQ+   ++AL LY  M   G   ++ T   ++ AC+
Sbjct: 345 AAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACS 404

Query: 285 GLALLELGTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISW 340
            +  +E G ++   + K       L     LLD+  + G L++A ++   M    D  +W
Sbjct: 405 HVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTW 464

Query: 341 STMISGLAQNGYSQEALKLFESMKVSRIK----PNYITIVGVLFACSHAGFVEDGWNHFK 396
           + ++S   + G  Q  +++ + + VS  K      YI +  +  + S  G V +      
Sbjct: 465 AALLSACKRQGRGQMGIRIADHL-VSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLG 523

Query: 397 SMKKFYGIDPG 407
            M+     DPG
Sbjct: 524 EME--VRKDPG 532


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/598 (37%), Positives = 341/598 (57%), Gaps = 15/598 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKC--CLARHAVEEAKLVHNHVLSGGFEP-ETFLVNI 114
           A+ A  AM   G+R +  T+    K   C           +H   L  G+ P + F+   
Sbjct: 95  ALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGPQIHALALRFGYLPGDPFVSCA 154

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL--IFMLRE-GV 171
            ++M+ K   L  A+ LF++MP RNV++W  +++   +A ++ + LE     F LRE G 
Sbjct: 155 AMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMT---NAVIDGRPLETFKAYFGLREAGG 211

Query: 172 RPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
            PN+ +  A   AC   + L    Q H  ++  GF+ DV V +A++D Y K      A  
Sbjct: 212 MPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARA 271

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           VF+ M  R+ V W S+I  +AQ+   ++AL +Y   +  G       ++SVL  C GL  
Sbjct: 272 VFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLG 331

Query: 289 LELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           L  G  +H   ++   D ++ + +AL+DMY KCG +EDA  VF  M ++++++W+ MI G
Sbjct: 332 LNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGG 391

Query: 347 LAQNGYSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
            A  G +Q AL +F++M +     PN+IT+V V+ ACS  G  +DG+  F +M++ +G++
Sbjct: 392 YAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVE 451

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
           P  EHY+C++DLLGRAG  + A ++I  MP  P    W ALLGACK+H  T+L   A++K
Sbjct: 452 PRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTELGRIASEK 511

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
           +  LDPQD G ++LLSN+ A++ +W E  +VRK M+  GI KEPGCSWI     +H F  
Sbjct: 512 LFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKEPGCSWITWKNVVHVFYA 571

Query: 526 ADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGL 585
            D+ H +  +I   L  L +++   GY PDT Y L D+E E+KE  +  HSEKLA+ FGL
Sbjct: 572 KDTKHDRNSEIQALLAKLKKQMQASGYMPDTQYSLYDVEEEEKETEVFQHSEKLALAFGL 631

Query: 586 MSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + +     IRI KNLRIC DCH   K  + +  + I++RD  R+H+F+   CSC DYW
Sbjct: 632 IHIPPSVPIRITKNLRICVDCHRAFKFVSGIVGREIIVRDNNRFHYFKQFECSCKDYW 689



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/419 (28%), Positives = 197/419 (47%), Gaps = 24/419 (5%)

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           +LS G  P  F+   L+N++ K  L   A       P   VVS+T  IS          A
Sbjct: 38  LLSPGLPP--FICAHLVNLYSKLDLPAAAASALASDPNPTVVSFTAFISGAAQHARPLAA 95

Query: 160 LELLIFMLREGVRPNMFTYSAVLRA-------CDSLIILRQLHCGIIKVGF-ESDVFVRS 211
           L     MLR G+RPN FT+ +  +A       C +  +  Q+H   ++ G+   D FV  
Sbjct: 96  LSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCST--VGPQIHALALRFGYLPGDPFVSC 153

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
           A +D+Y K G L  A  +F EMP R+++ WN+++     +    E    Y  ++ AG   
Sbjct: 154 AAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGRPLETFKAYFGLREAGGMP 213

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVF 329
           +  ++ +   AC G   L LG Q H  V+   +D D+ ++NA++D Y KC     A +VF
Sbjct: 214 NVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVF 273

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
             M  ++ +SW +MI   AQ+G  ++AL ++   + +  +P    +  VL  C  AG + 
Sbjct: 274 DGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTC--AGLL- 330

Query: 390 DGWNHFKSMKKFY---GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            G N  +++        ID      S ++D+ G+ G +++A ++  +MP E + VTW A+
Sbjct: 331 -GLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMP-ERNLVTWNAM 388

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW--DEVAEVRKTMRAR 503
           +G      +   A+     ++      P    L++ I A S+     +  E+  TMR R
Sbjct: 389 IGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRER 447


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/561 (39%), Positives = 323/561 (57%), Gaps = 37/561 (6%)

Query: 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
           V++ LL+EA+ L  Q PERNVVSWT++I+ Y  A     A+     ML +GV P+     
Sbjct: 182 VRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVI 241

Query: 180 AVLRACDSL---------------------------IILRQLHCGIIK--------VGFE 204
             L AC  L                           +I     CG I         VG  
Sbjct: 242 GALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRG 301

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
                 +A+ID Y KLG +  A  +F++M  RD++ +NS+I G+  +  + +AL L+ +M
Sbjct: 302 QKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQM 361

Query: 265 KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSL 322
           +R G  AD  T+ S+L AC  L  L  G  +H  + +   + D+ L  ALLDMY KCG +
Sbjct: 362 RRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRV 421

Query: 323 EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
           ++A +VF RM ++DV +W+ MI+GLA NG  ++AL+ F  MK    +P  +T + VL AC
Sbjct: 422 DEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTAC 481

Query: 383 SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
           SH+  +++G  HF  M+  + + P  EHY CMIDLL R+G L EA+ L+  MP +P+AV 
Sbjct: 482 SHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVI 541

Query: 443 WRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502
           W ++L AC+VH+N DLA  AA+ +L L P++   Y+ L NIY +S++W +   VR  M  
Sbjct: 542 WGSILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEE 601

Query: 503 RGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQD 562
           RG+ K  G S I V  Q+H F   D SHP   +I   ++ +  +L  VGY+P T+ +  D
Sbjct: 602 RGVKKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGYSPVTSRIAVD 661

Query: 563 LEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIV 622
           ++ E+KE ++  HSEK+AI FGL+SL     I I KNLR+C DCH+  KL +++ N+ I+
Sbjct: 662 VDEEEKEQALLAHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDCHSAIKLVSQLWNREII 721

Query: 623 IRDPIRYHHFQDGNCSCGDYW 643
           +RD  R+HHF+DG CSC D+W
Sbjct: 722 VRDRSRFHHFRDGACSCNDFW 742



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 140/251 (55%), Gaps = 11/251 (4%)

Query: 104 GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL 163
           G +PE +  N +++ + K   ++ A+ LFDQM  R+V+++ +MI+ Y  +     AL+L 
Sbjct: 301 GQKPEPW--NAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLF 358

Query: 164 IFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKL 220
           + M R G+R + FT  ++L AC SL  L   R LH  I +   E DV++ +AL+D+Y K 
Sbjct: 359 MQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKC 418

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           G +  A  VF+ M  RD+  W ++I G A N    +AL  + +MKR GF     T  +VL
Sbjct: 419 GRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVL 478

Query: 281 RACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQK 335
            AC+  +LL+ G ++H + ++  H L         ++D+  + G L++AM +   M +Q 
Sbjct: 479 TACSHSSLLDEG-RLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQP 537

Query: 336 DVISWSTMISG 346
           + + W +++S 
Sbjct: 538 NAVIWGSILSA 548



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 172/391 (43%), Gaps = 74/391 (18%)

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMN-DKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
           LFD++P      + T + A   A    D  + LL  M   GVR   FT+  V R C +  
Sbjct: 57  LFDRLPHSTTFLFDTALRACLQASAGADHPVLLLRRMRSGGVRTGAFTFHFVFRCCAAGA 116

Query: 190 -----ILRQLHCGIIKVGFESDV-FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
                +   LH   ++    S    V + LI +YA +G   +A   F+E+P +D VVW +
Sbjct: 117 RARAGLCLMLHAACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWAT 176

Query: 244 IIGGFAQNSDVDEALNL------------------YKRMKRA-------------GFAAD 272
           +IGG  +   +DEA  L                  Y R  R              G A D
Sbjct: 177 VIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPD 236

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHV----LKYDHDLILN------------------- 309
           +  +   L AC+ L  L+LG  +H+ V    ++   +L++                    
Sbjct: 237 EVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFD 296

Query: 310 -----------NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
                      NA++D YCK G ++ A S+F +M  +DVI++++MI+G   +G  ++AL+
Sbjct: 297 AVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQ 356

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
           LF  M+   ++ +  T+V +L AC+  G +  G     S+++   ++      + ++D+ 
Sbjct: 357 LFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRI-VEEDVYLGTALLDMY 415

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            + G++ EA  + H M  E D  TW A++  
Sbjct: 416 MKCGRVDEATAVFHRMG-ERDVHTWTAMIAG 445



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 10/230 (4%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEE 92
           + IT NS       T + +   L  A++    M+ HG+RAD+ T   L+  C +  A+  
Sbjct: 334 DVITFNSM-----ITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPH 388

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
            + +H  +     E + +L   LL+M++K   ++EA  +F +M ER+V +WT MI+    
Sbjct: 389 GRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAF 448

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRAC--DSLIILRQLHCGIIKV--GFESDVF 208
             M   ALE    M R+G +P   TY AVL AC   SL+   +LH   ++        V 
Sbjct: 449 NGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVE 508

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEA 257
               +ID+ A+ G L  A  +   MP + + V+W SI+     + ++D A
Sbjct: 509 HYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLA 558


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/556 (38%), Positives = 331/556 (59%), Gaps = 40/556 (7%)

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
           A+ +F+++  +  V W  MIS Y  + M  +A EL   M+ E V  + FT+++VL AC +
Sbjct: 247 ARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACAN 306

Query: 188 LIIL---RQLHCGIIKV--GF--ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           + +    + +H  II++   F  E+ + V +AL+  Y+K G +  A  +F+ M  +D+V 
Sbjct: 307 VGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVS 366

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMK---------------RAGFAADQSTLTSVLR---- 281
           WN+I+ G+ ++S +D+A+ +++ M                  GFA D   L + +R    
Sbjct: 367 WNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENV 426

Query: 282 ------------ACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMS 327
                       AC  L  L+ G Q+H H+  L ++      NAL+ MY +CG++++A  
Sbjct: 427 KPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHL 486

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           +F  M   D +SW+ MIS L Q+G+ +EAL+LF+ M    I P+ I+ + VL AC+H+G 
Sbjct: 487 MFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGL 546

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           V++G+ +F+SMK+ +GI PG +HY+ +IDLLGRAG++ EA  LI  MP+EP    W A+L
Sbjct: 547 VDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAIL 606

Query: 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507
             C+   + +L   AA ++  + PQ  GTYILLSN Y+ +  W + A VRK MR RG+ K
Sbjct: 607 SGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKK 666

Query: 508 EPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQ 567
           EPGCSWIE   ++H F V D+ HP+  ++ K L+ +  K+  +GY PDT  VL D+E  Q
Sbjct: 667 EPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPHQ 726

Query: 568 KEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPI 627
           KE  +  HSE+LA+ FGL++L  G T+ + KNLRIC DCH      +K   + IV+RD  
Sbjct: 727 KEHILFAHSERLAVGFGLLNLPPGATVTVLKNLRICDDCHAAIMFMSKAVGREIVVRDVR 786

Query: 628 RYHHFQDGNCSCGDYW 643
           R+HHF+DG CSCG+YW
Sbjct: 787 RFHHFKDGECSCGNYW 802



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 179/408 (43%), Gaps = 81/408 (19%)

Query: 125 LEEAQVLFDQMP--ERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAV 181
           L  A   FD +P   R+ V    +ISAY  A     A+ +   +L  G +RP+ ++++A+
Sbjct: 104 LPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTAL 163

Query: 182 LRACDSL--IILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGE---LRNAECVFNEM 233
           L A   L  I +R   QLHC ++K G    + V +AL+ +Y K       R+A  V +EM
Sbjct: 164 LSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEM 223

Query: 234 PTRDL-------------------------------VVWNSIIGGFAQNSDVDEALNLYK 262
           P +D                                VVWN++I G+  +    EA  L++
Sbjct: 224 PNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFR 283

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI------LNNALLDMY 316
           RM       D+ T TSVL AC  + L   G  VH  +++   + +      +NNAL+  Y
Sbjct: 284 RMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFY 343

Query: 317 CKCGSLEDAMSVFSRMIQKDVISWST-------------------------------MIS 345
            KCG++  A  +F  M  KDV+SW+T                               M+S
Sbjct: 344 SKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVS 403

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           G    G++++ALKLF  M+   +KP   T  G + AC   G ++ G      + +  G +
Sbjct: 404 GYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQL-GFE 462

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
                 + +I +  R G ++EA  +   MP   D+V+W A++ A   H
Sbjct: 463 GSNSAGNALITMYARCGAVKEAHLMFLVMP-NIDSVSWNAMISALGQH 509



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 129/247 (52%), Gaps = 9/247 (3%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N +L+ +V+ S L++A  +F++MP +N +SW  M+S Y      + AL+L   M  E V+
Sbjct: 368 NTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVK 427

Query: 173 PNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P  +TY+  + AC  L  L   +QLH  I+++GFE      +ALI +YA+ G ++ A  +
Sbjct: 428 PCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLM 487

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F  MP  D V WN++I    Q+    EAL L+ RM   G   D+ +  +VL AC    L+
Sbjct: 488 FLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLV 547

Query: 290 ELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRMIQKDVIS-WSTMI 344
           + G + +   +K D  +I        L+D+  + G + +A  +   M  +   S W  ++
Sbjct: 548 DEGFR-YFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAIL 606

Query: 345 SGLAQNG 351
           SG   +G
Sbjct: 607 SGCRTSG 613



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 25/213 (11%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+K  + M+   V+    TYA  I  C    A++  K +H H++  GFE      N L+ 
Sbjct: 414 ALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALIT 473

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ +   ++EA ++F  MP  + VSW  MISA        +ALEL   M+ EG+ P+  +
Sbjct: 474 MYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRIS 533

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFE--------------SDVFVRSALIDIYAKLGEL 223
           +  VL AC+        H G++  GF                D + R  LID+  + G +
Sbjct: 534 FLTVLTACN--------HSGLVDEGFRYFESMKRDFGIIPGEDHYTR--LIDLLGRAGRI 583

Query: 224 RNAECVFNEMPTRDL-VVWNSIIGGFAQNSDVD 255
             A  +   MP      +W +I+ G   + D++
Sbjct: 584 GEARDLIKTMPFEPTPSIWEAILSGCRTSGDME 616



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 118/281 (41%), Gaps = 45/281 (16%)

Query: 211 SALIDIYAKLGELRNAECVFNEMPT--RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           ++L+  YA    L  A   F+ +P   RD V+ N++I  +A+ S    A+ +++ +  +G
Sbjct: 92  TSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASG 151

Query: 269 -FAADQSTLTSVLRACTGLALLELG--TQVHVHVLKYDHDLILN--NALLDMYCKCGSLE 323
               D  + T++L A   L  + +    Q+H  VLK      L+  NAL+ +Y KC S E
Sbjct: 152 SLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPE 211

Query: 324 ---DAMSVFSRMIQKDVISWST-------------------------------MISGLAQ 349
              DA  V   M  KD ++W+T                               MISG   
Sbjct: 212 ATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVH 271

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG---WNHFKSMKKFYGIDP 406
           +G + EA +LF  M + R+  +  T   VL AC++ G    G         ++  +  + 
Sbjct: 272 SGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEA 331

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
                + ++    + G +  A ++   M  + D V+W  +L
Sbjct: 332 ALPVNNALVTFYSKCGNIAVARRIFDNMTLK-DVVSWNTIL 371


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/591 (35%), Positives = 341/591 (57%), Gaps = 5/591 (0%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    MQ  G +    T+A +I   +        + +H  V+   F    F+ N  L+
Sbjct: 225 AIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLD 284

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            + K   + E + LF++MPE + VS+  +I+AY       ++++L   +         F 
Sbjct: 285 FYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFP 344

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +  +L    S + L   RQLH  ++    + D  V ++L+D+YAK G+   A+ +F  + 
Sbjct: 345 FPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFLRLS 404

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
           +R  V W ++I    Q    +  L L+  M+RA  +ADQ+T   VL+A   LA + LG Q
Sbjct: 405 SRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASILLGKQ 464

Query: 295 VHVHVLKYDHDLILNN-ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           +H  V++     + +  ALLDMY  C S++DA+  F  M +++V++W+ ++S  AQNG  
Sbjct: 465 LHSCVIRSGFMNVYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDG 524

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
           +  LK FE M +S  +P+ ++ + +L ACSH   VE+G  +F  M   Y + P REHY+ 
Sbjct: 525 KGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKREHYTA 584

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP-Q 472
           M+D L R+G+  EA KL+ +MP+EPD + W ++L +C++H+N  LA  AA ++ N+   +
Sbjct: 585 MVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQLFNMKVLR 644

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           D   Y+ +SNI+A + +WD V +V+K MR RG+ K P  SW+E+  ++H F+  D  HPQ
Sbjct: 645 DAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVHVFSANDDKHPQ 704

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
             +I + ++ L +++   GY PD +   Q+++ E K DS++YHSE+LAI F L++  +G 
Sbjct: 705 QLEILRKIEMLAEQMEKEGYDPDISCAHQNVDKESKIDSLKYHSERLAIAFALINTPEGS 764

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            I + KNLR C DCH   K+ +K+  + I +RD  R+HHF+DG+CSCGDYW
Sbjct: 765 PILVMKNLRACTDCHAAIKVISKIVGREITVRDSNRFHHFRDGSCSCGDYW 815



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 196/411 (47%), Gaps = 36/411 (8%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A K    M   G + D VTY  L+  C      +E    H  ++  G      + N LL+
Sbjct: 124 AFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLD 183

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            + K   L+ A+ LF +M   + VS+  MI+ Y +  +N++A+EL + M   G +P+ FT
Sbjct: 184 SYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFT 243

Query: 178 YSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           ++AV+ A    D     +Q+H  ++K  F  +VFV +A +D Y+K   +     +FNEMP
Sbjct: 244 FAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMP 303

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
             D V +N II  +A    V E+++L++ ++   F        ++L        L++G Q
Sbjct: 304 ELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQ 363

Query: 295 VHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           +H  V+    D D  ++N+L+DMY KCG  E+A  +F R+  +  + W+ MIS   Q G 
Sbjct: 364 LHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGL 423

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
            +  LKLF  M+ + +  +  T     FAC             K+      I  G++ +S
Sbjct: 424 HENGLKLFYEMRRANVSADQAT-----FACV-----------LKASANLASILLGKQLHS 467

Query: 413 CMI--------------DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           C+I              D+      +++A+K   EM  E + VTW ALL A
Sbjct: 468 CVIRSGFMNVYSGCALLDMYANCASIKDAIKTFEEMS-ERNVVTWNALLSA 517



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 173/346 (50%), Gaps = 7/346 (2%)

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
           +F ++I+++ +VK   L  A+ +FD   ER VV+WTTMI AY  +     A +L   M R
Sbjct: 74  SFSIDIIISGYVKSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHR 133

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQL---HCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
            G +P+  TY  +L  C+ L + ++L   H  I+K+G   +  V + L+D Y K G L +
Sbjct: 134 SGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDS 193

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F EM   D V +N +I G+A N   +EA+ L+  M+  GF     T  +V+ A  G
Sbjct: 194 ARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVG 253

Query: 286 LALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           L     G Q+H  V+K  +  ++ + NA LD Y K   + +   +F+ M + D +S++ +
Sbjct: 254 LDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVI 313

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           I+  A  G  +E++ LF+ ++ +           +L   + +  ++ G     +      
Sbjct: 314 ITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMG-RQLHAQVVVSM 372

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            DP     + ++D+  + GK +EA ++   +      V W A++ A
Sbjct: 373 ADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSR-STVPWTAMISA 417



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 130/301 (43%), Gaps = 45/301 (14%)

Query: 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD-------------------- 237
           I+K GF+      + +I   ++ G+L  A  + ++MP R+                    
Sbjct: 34  IVKTGFDPITSRFNFMIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGNLTVA 93

Query: 238 -----------LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
                      +V W ++IG +++++   +A  L+  M R+G   D  T  ++L  C  L
Sbjct: 94  RRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTGCNDL 153

Query: 287 ALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
            + +   Q H  ++K  H L   + N LLD Y K G L+ A  +F  M   D +S++ MI
Sbjct: 154 EVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMI 213

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC---SHAGFVEDGWNHFKSMKKF 401
           +G A NG ++EA++LF  M+    KP+  T   V+ A        F +            
Sbjct: 214 TGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFI 273

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA----CKVHRNTD 457
             +  G    +  +D   +   + E  KL +EMP E D V++  ++ A     KV  + D
Sbjct: 274 RNVFVG----NAFLDFYSKHDCVNEVRKLFNEMP-ELDGVSYNVIITAYAWVGKVKESID 328

Query: 458 L 458
           L
Sbjct: 329 L 329


>gi|414879360|tpg|DAA56491.1| TPA: hypothetical protein ZEAMMB73_164599 [Zea mays]
          Length = 520

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/512 (40%), Positives = 315/512 (61%), Gaps = 8/512 (1%)

Query: 140 VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI----ILRQLH 195
           VV++   IS    A +  +AL L   M   G+R + +T   +L +   L      +  LH
Sbjct: 9   VVAYNAAISRCARAGLYARALALFREMRGRGLRADEYTLPPLLNSAAQLRGPPEAVAALH 68

Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAEC--VFNEMPTRDLVVWNSIIGGFAQNSD 253
             +++ G    + V +AL+D YA+L     A    VF+EMP RD+V W S++ G A+   
Sbjct: 69  ALLLRAGLAPHLHVANALVDAYARLPHAGAAAARAVFDEMPRRDVVTWTSLLTGLARAGA 128

Query: 254 VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNA 311
              A+  Y  M  +G   D+  + + L +C     L+LG  VH   ++        + N+
Sbjct: 129 HGAAVRAYHGMVASGVQPDEFAVPAALSSCAASTALDLGRSVHAAAVRLGLRPFRSVENS 188

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+ MY K G+L DA +VF  M  +  I+W+ +I G AQNG  +++L+++  M  S  +P+
Sbjct: 189 LVSMYAKTGALRDARAVFDAMPARCTITWTALIVGYAQNGRGRQSLEVYADMVRSGCRPD 248

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
           Y+T +G+LFACSHAG V+ G  HF+SM   YGI PG +HY+CM+DLLGRAG+L EA+ L+
Sbjct: 249 YVTFIGLLFACSHAGLVDAGRAHFRSMVPVYGIAPGPDHYACMVDLLGRAGRLDEAMDLL 308

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
           +    E DA  W++LLGAC+VH+N +LA  AA+ +  LDP D   Y++LSN+Y+ +++W 
Sbjct: 309 NRSSTELDATVWKSLLGACRVHQNAELAERAAEMVWRLDPADAVPYVMLSNLYSRARRWG 368

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
           +VA +R  M+ARG+TKEPGCSW+ VN   H F+V D  HP+  +I + ++ + +++   G
Sbjct: 369 DVARIRALMKARGVTKEPGCSWVGVNGITHLFHVEDRDHPRAAEIYRKVEEMTERIRVEG 428

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           Y PDT++ LQD   E ++  + YHSE+LA+ FGL+++     IR+ KNLR+CGDCHT  K
Sbjct: 429 YVPDTDWALQDEVPEWRQRGLAYHSERLAVAFGLLAVPAAAPIRVFKNLRVCGDCHTAIK 488

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + AK+  + I++RD   +HH +DG CSCGDYW
Sbjct: 489 MVAKVYGREIILRDANCFHHMKDGECSCGDYW 520



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 149/301 (49%), Gaps = 14/301 (4%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLA-RHAVEEAKLVHNHVLSGGFEPETFLVNIL 115
           RA+     M+  G+RAD  T   L+      R   E    +H  +L  G  P   + N L
Sbjct: 27  RALALFREMRGRGLRADEYTLPPLLNSAAQLRGPPEAVAALHALLLRAGLAPHLHVANAL 86

Query: 116 LNMHVKFS--LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
           ++ + +        A+ +FD+MP R+VV+WT++++    A  +  A+     M+  GV+P
Sbjct: 87  VDAYARLPHAGAAAARAVFDEMPRRDVVTWTSLLTGLARAGAHGAAVRAYHGMVASGVQP 146

Query: 174 NMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           + F   A L +C    +L + R +H   +++G      V ++L+ +YAK G LR+A  VF
Sbjct: 147 DEFAVPAALSSCAASTALDLGRSVHAAAVRLGLRPFRSVENSLVSMYAKTGALRDARAVF 206

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           + MP R  + W ++I G+AQN    ++L +Y  M R+G   D  T   +L AC+   L++
Sbjct: 207 DAMPARCTITWTALIVGYAQNGRGRQSLEVYADMVRSGCRPDYVTFIGLLFACSHAGLVD 266

Query: 291 LG-----TQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSR-MIQKDVISWSTMI 344
            G     + V V+ +    D      ++D+  + G L++AM + +R   + D   W +++
Sbjct: 267 AGRAHFRSMVPVYGIAPGPDHY--ACMVDLLGRAGRLDEAMDLLNRSSTELDATVWKSLL 324

Query: 345 S 345
            
Sbjct: 325 G 325



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 114/259 (44%), Gaps = 45/259 (17%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++A H M   GV+ D       +  C A  A++  + VH   +  G  P   + N L++
Sbjct: 132 AVRAYHGMVASGVQPDEFAVPAALSSCAASTALDLGRSVHAAAVRLGLRPFRSVENSLVS 191

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L +A+ +FD MP R  ++WT +I  Y       ++LE+   M+R G RP+  T
Sbjct: 192 MYAKTGALRDARAVFDAMPARCTITWTALIVGYAQNGRGRQSLEVYADMVRSGCRPDYVT 251

Query: 178 YSAVLRACDSLIILRQLHCGIIKVG---FESDVFV---------RSALIDIYAKLGELRN 225
           +  +L AC         H G++  G   F S V V          + ++D+  + G L  
Sbjct: 252 FIGLLFACS--------HAGLVDAGRAHFRSMVPVYGIAPGPDHYACMVDLLGRAGRLDE 303

Query: 226 AECVFNEMPTR-DLVVWNSIIGG--FAQNSDVDEAL-------------------NLYKR 263
           A  + N   T  D  VW S++G     QN+++ E                     NLY R
Sbjct: 304 AMDLLNRSSTELDATVWKSLLGACRVHQNAELAERAAEMVWRLDPADAVPYVMLSNLYSR 363

Query: 264 MKRAGFAADQSTLTSVLRA 282
            +R G   D + + ++++A
Sbjct: 364 ARRWG---DVARIRALMKA 379


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/617 (35%), Positives = 350/617 (56%), Gaps = 17/617 (2%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARH--AVEEAKLVH 97
           ++L+  + R   Q D+ R   AM  M+  G+  +S     +IKCC       ++ A  VH
Sbjct: 184 NALVSGYVRAGAQDDMLRVF-AM--MRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVH 240

Query: 98  NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC--DAKM 155
             V+  GF+ + FL + ++ M+ K   L EA  LF  + + NVV +  MI+  C  +A +
Sbjct: 241 GCVVKAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAV 300

Query: 156 ND----KALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVF 208
                 +AL L   +   G+ P  FT+S+V+RAC+    +   +Q+H  ++K  F+ D F
Sbjct: 301 GTDVLREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDF 360

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           + SALID+Y   G + +    F  +P +D+V W ++I G  QN   + AL L+  +  AG
Sbjct: 361 IGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHELLGAG 420

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAM 326
              D  T++SV+ AC  LA+   G Q+     K  +     + N+ + MY + G +  A+
Sbjct: 421 LKPDPFTISSVMNACASLAVARTGEQIQCFATKSGFGRFTAMGNSCIHMYARSGDVHAAV 480

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
             F  M   D++SWS +IS  AQ+G +++AL+ F  M  +++ PN IT +GVL ACSH G
Sbjct: 481 RRFQEMESHDIVSWSAVISSHAQHGCARDALRFFNEMVDAKVVPNEITFLGVLTACSHGG 540

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            V++G  ++++MK+ Y + P  +H +C++DLLGRAG+L +A   I +  +  + V WR+L
Sbjct: 541 LVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVIWRSL 600

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           L +C++HR+ +     A +I+ L P    +Y+ L NIY ++ +    +++R  M+ RG+ 
Sbjct: 601 LASCRIHRDMERGQLVADRIMELQPSSSASYVNLYNIYLDAGELSLASKIRDVMKERGVK 660

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           KEPG SWIE+   +H+F   D SHP+ + I   L  ++ K+  +  A D +    D    
Sbjct: 661 KEPGLSWIELRSGVHSFVAGDKSHPESNAIYSKLAEMLSKIDKL-TATDASSTKSDDTIR 719

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
            ++  + +HSEKLA+  GL+ L Q   IR+ KNLR+C DCH   KL +K E + IV+RD 
Sbjct: 720 NEQSWMNWHSEKLAVALGLIHLPQSAPIRVMKNLRVCRDCHLTMKLISKSEKREIVLRDA 779

Query: 627 IRYHHFQDGNCSCGDYW 643
           IR+HHF+DG+CSC DYW
Sbjct: 780 IRFHHFRDGSCSCADYW 796



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 128/407 (31%), Positives = 206/407 (50%), Gaps = 23/407 (5%)

Query: 64  AMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123
           A +  GVRAD  TYA  +  C     + E K VH   +  G     F+ N L++M+ +  
Sbjct: 104 ARRSAGVRADRFTYAAALAACSRAGRLREGKAVHALSVLEGIAGGVFVSNSLVSMYARCG 163

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
            + +A+ +FD   ER+ VSW  ++S Y  A   D  L +   M R G+  N F   +V++
Sbjct: 164 DMGQARQVFDAADERDDVSWNALVSGYVRAGAQDDMLRVFAMMRRSGIGLNSFALGSVIK 223

Query: 184 ACDS-----LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
            C       + I   +H  ++K GF+SDVF+ SA++ +YAK G L  A  +F  +   ++
Sbjct: 224 CCAGSDDPVMDIAAAVHGCVVKAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNV 283

Query: 239 VVWNSIIGGF-----AQNSDV-DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           VV+N++I G      A  +DV  EAL+LY  ++  G    + T +SV+RAC     +E G
Sbjct: 284 VVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFG 343

Query: 293 TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
            Q+H  VLK  +  D  + +AL+D+Y   G +ED    F+ + ++DV++W+ MISG  QN
Sbjct: 344 KQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQN 403

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
              + AL LF  +  + +KP+  TI  V+ AC+       G        + +    G   
Sbjct: 404 ELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVARTG-----EQIQCFATKSGFGR 458

Query: 411 YSCM----IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           ++ M    I +  R+G +  AV+   EM    D V+W A++ +   H
Sbjct: 459 FTAMGNSCIHMYARSGDVHAAVRRFQEMESH-DIVSWSAVISSHAQH 504



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 205/395 (51%), Gaps = 28/395 (7%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D+     L  C   RHA      VH H++     P  FL N LL  + +  L   A+ L 
Sbjct: 17  DAYYLHHLRSCSAPRHAAA----VHAHIVRAHPSPSLFLRNTLLAAYCR--LGGHARRLL 70

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNMFTYSAVLRACDSLIIL 191
           D+MP  N VS+  +I AY  A   + +LE      R  GVR + FTY+A L AC     L
Sbjct: 71  DEMPRTNAVSFNLLIDAYSRAGQPEASLETFARARRSAGVRADRFTYAAALAACSRAGRL 130

Query: 192 RQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
           R+   +H   +  G    VFV ++L+ +YA+ G++  A  VF+    RD V WN+++ G+
Sbjct: 131 REGKAVHALSVLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGY 190

Query: 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL--ALLELGTQVHVHVLK--YDH 304
            +    D+ L ++  M+R+G   +   L SV++ C G    ++++   VH  V+K  +D 
Sbjct: 191 VRAGAQDDMLRVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDS 250

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS------QEALK 358
           D+ L +A++ MY K G+L +A+++F  ++  +V+ ++ MI+GL ++  +      +EAL 
Sbjct: 251 DVFLASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALS 310

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKK-FYGID-PGREHYSCMI 415
           L+  ++   ++P   T   V+ AC+ AG +E G   H + +K  F G D  G    S +I
Sbjct: 311 LYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIG----SALI 366

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           DL   +G +++  +    +P + D VTW A++  C
Sbjct: 367 DLYLNSGCMEDGFRCFTSVPKQ-DVVTWTAMISGC 400


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/531 (40%), Positives = 321/531 (60%), Gaps = 13/531 (2%)

Query: 125 LEEAQVLFDQMPE-RNVVSWTTMISAYCDAKMNDK-----ALELLIFMLREGVRPNMFTY 178
           L  A+ +FD++P   + V + T++  Y  +          A+ + + ML EGV P+ +T+
Sbjct: 77  LAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTF 136

Query: 179 SAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235
            ++L+AC +       RQ H   +K+G     +VR  LI++YA+ G+ R A  +F     
Sbjct: 137 VSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDG 196

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
             +V +N++I    ++S   EAL L++ M+  G      T+ SVL AC  L  LELG  V
Sbjct: 197 GCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWV 256

Query: 296 HVHVLKYDHDLIL--NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H +V K     ++  + AL+DMY KCGSLEDA+ VF  M  KD  +WS MI   A +GY 
Sbjct: 257 HDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVAYANHGYG 316

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
           +EA+ LFE MK   +KP+ IT +GVL+ACSH+G V +G  +F  MK  +GI PG +HY C
Sbjct: 317 REAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDMKD-HGIVPGIKHYGC 375

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           + DLL R+G+L+ A K I E+P  P  + WR LL AC  H + +L     ++IL LD   
Sbjct: 376 VTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDFELGKRVFERILKLDDSH 435

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQI 533
            G Y++ SN+ AN+  W+E+  VRK M  +G+ K PGCS IE++  +H F   D  HP+ 
Sbjct: 436 GGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNTVHEFFAGDGRHPKS 495

Query: 534 DKINKHLKHLIQKLVGVGYAPDTNYVLQ-DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
            +  K +  +I +L  VGY P+T++V   ++  E+K  S++YHSEKLAI FGL++   G 
Sbjct: 496 QEARKMVDEVIDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLNTAPGA 555

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           T+R+ KNLR+C DCH+ AKL + + N+ I++RD  R+HHF++G CSCGDYW
Sbjct: 556 TLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEEGICSCGDYW 606



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 152/314 (48%), Gaps = 10/314 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M   GV  D+ T+  L+K C A  A EE +  H   +  G     ++   L+N
Sbjct: 117 AVRVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLIN 176

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ +      A+V+F       VVS+  MI+A   +    +AL L   M  +G++P   T
Sbjct: 177 MYAECGDARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVT 236

Query: 178 YSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
             +VL AC    +L + R +H  + K+G  S V V +ALID+YAK G L +A  VF  M 
Sbjct: 237 VISVLSACALLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGME 296

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
           ++D   W+ +I  +A +    EA++L++ MK+ G   D  T   VL AC+   L+  G Q
Sbjct: 297 SKDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQ 356

Query: 295 VHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQ 349
            +   +K DH ++        + D+  + G LE A      + I    I W T++S    
Sbjct: 357 -YFDDMK-DHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGG 414

Query: 350 NGYSQEALKLFESM 363
           +G  +   ++FE +
Sbjct: 415 HGDFELGKRVFERI 428


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 238/632 (37%), Positives = 364/632 (57%), Gaps = 20/632 (3%)

Query: 21   FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAEL 80
            F L  +    S N+I     S LD   RF        A+   H M+ +G+     +    
Sbjct: 413  FQLMPSKDTVSWNSII----SGLDHNERF------EEAVACFHTMRRNGMVPSKFSVIST 462

Query: 81   IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
            +  C +   +   + +H   +  G + +  + N LL ++ +   +EE Q +F  MPE + 
Sbjct: 463  LSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQ 522

Query: 141  VSWTTMISAYCDAKMND-KALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHC 196
            VSW + I A   ++ +  +A++  + M++ G +PN  T+  +L A  SL +L   RQ+H 
Sbjct: 523  VSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHA 582

Query: 197  GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVD 255
             I+K     D  + + L+  Y K  ++ + E +F+ M  R D V WN++I G+  N  + 
Sbjct: 583  LILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILH 642

Query: 256  EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
            +A+ L   M + G   D  TL +VL AC  +A LE G +VH   ++   + ++++ +AL+
Sbjct: 643  KAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALV 702

Query: 314  DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
            DMY KCG ++ A   F  M  +++ SW++MISG A++G+  +ALKLF  MK     P+++
Sbjct: 703  DMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHV 762

Query: 374  TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
            T VGVL ACSH G V++G+ HFKSM + Y + P  EH+SCM+DLLGRAG +++  + I  
Sbjct: 763  TFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKT 822

Query: 434  MPYEPDAVTWRALLGAC--KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
            MP  P+A+ WR +LGAC     RNT+L   AAK ++ L+P +   Y+LLSN++A   KW+
Sbjct: 823  MPMNPNALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWE 882

Query: 492  EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
            +V E R  MR   + KE GCSW+ +   +H F   D +HP+ +KI   LK ++ K+  +G
Sbjct: 883  DVEEARLAMRNAEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLG 942

Query: 552  YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
            Y P+T Y L DLE E KE+ + YHSEKLAI F L   ++   IRI KNLR+CGDCHT  K
Sbjct: 943  YVPETKYALYDLELENKEELLSYHSEKLAIAFVLTRQSE-LPIRIIKNLRVCGDCHTAFK 1001

Query: 612  LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
              + + N+ I++RD  R+HHF  G CSC DYW
Sbjct: 1002 YISNIVNRQIILRDSNRFHHFDGGICSCQDYW 1033



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 206/431 (47%), Gaps = 21/431 (4%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGV----RADSVTYAELIK--CCLARHAV 90
           + S+S     + +C + D   A K   +MQ        R +  T+  L+   C L    +
Sbjct: 207 KTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGL 266

Query: 91  EEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
              + +   +    F  + ++ + L++   ++ L++ A+++F+QM +RN V+   ++   
Sbjct: 267 TLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGL 326

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ-------LHCGIIKVGF 203
                 ++A ++   M ++ V  N  +Y+ +L A      L++       +H  +I+   
Sbjct: 327 ARQHQGEEAAKIFKEM-KDLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNAL 385

Query: 204 -ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
            +  + + +AL+++YAK   + NA  +F  MP++D V WNSII G   N   +EA+  + 
Sbjct: 386 VDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFH 445

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCG 320
            M+R G    + ++ S L +C  L  + LG Q+H   +K   D D+ ++NALL +Y +  
Sbjct: 446 TMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETD 505

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS-QEALKLFESMKVSRIKPNYITIVGVL 379
            +E+   VF  M + D +SW++ I  LA +  S  +A+K F  M  +  KPN +T + +L
Sbjct: 506 CMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINIL 565

Query: 380 FACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP 438
            A S    +E G   H   +K     D   E  + ++   G+  ++++   +   M    
Sbjct: 566 SAVSSLSLLELGRQIHALILKHSVADDNAIE--NTLLAFYGKCEQMEDCEIIFSRMSERR 623

Query: 439 DAVTWRALLGA 449
           D V+W A++  
Sbjct: 624 DEVSWNAMISG 634



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 188/393 (47%), Gaps = 50/393 (12%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
           VE+A  +H  +   G   + F  N L+N+ V+   L  AQ LFD+MP++N+VSW+ ++S 
Sbjct: 55  VEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSG 114

Query: 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC-----DSLIILRQLHCGIIKVGFE 204
           Y    M D+A  L   ++  G+ PN +   + LRAC     + L +  ++H  I K  + 
Sbjct: 115 YAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYA 174

Query: 205 SDVFVRSALIDIYAKL-GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
           SD+ + + L+ +Y+     + +A  VF E+  +    WNSII  + +  D   A  L+  
Sbjct: 175 SDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSS 234

Query: 264 MKRAGFA----ADQSTLTSVLR-ACT----GLALLELGTQVHVHVLK--YDHDLILNNAL 312
           M+R         ++ T  S++  AC+    GL LLE   Q+   + K  +  DL + +AL
Sbjct: 235 MQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLE---QMLARIEKSSFVKDLYVGSAL 291

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           +  + + G ++ A  +F +M  ++ ++ + ++ GLA+    +EA K+F+ MK      + 
Sbjct: 292 VSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMK------DL 345

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS----------------CMID 416
           + I    +A   + F E     F ++K+  G   G+E ++                 +++
Sbjct: 346 VEINASSYAVLLSAFTE-----FSNLKE--GKRKGQEVHAYLIRNALVDVWILIGNALVN 398

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           L  +   +  A  +   MP   D V+W +++  
Sbjct: 399 LYAKCNAIDNARSIFQLMP-SKDTVSWNSIISG 430



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 165/322 (51%), Gaps = 26/322 (8%)

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           QLH  I K G  SDVF  + L++I+ + G L +A+ +F+EMP ++LV W+ ++ G+AQN 
Sbjct: 60  QLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNG 119

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA--LLELGTQVHVHVLK--YDHDLIL 308
             DEA  L++ +  AG   +   + S LRAC  L   +L+LG ++H  + K  Y  D++L
Sbjct: 120 MPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVL 179

Query: 309 NNALLDMYCKC-GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS- 366
           +N L+ MY  C  S++DA  VF  +  K   SW+++IS   + G +  A KLF SM+   
Sbjct: 180 SNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREA 239

Query: 367 ---RIKPNYITIVG-VLFACSHAGFVEDGWNHFKSM-KKFYGIDPGREHY--SCMIDLLG 419
                +PN  T    V  ACS    V+ G    + M  +       ++ Y  S ++    
Sbjct: 240 TELNCRPNEYTFCSLVTVACS---LVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFA 296

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALL-GACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
           R G L ++ K+I E   + +AVT   L+ G  + H+  + A    K++ +L   +  +Y 
Sbjct: 297 RYG-LIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAK-IFKEMKDLVEINASSYA 354

Query: 479 LL-------SNIYANSQKWDEV 493
           +L       SN+    +K  EV
Sbjct: 355 VLLSAFTEFSNLKEGKRKGQEV 376


>gi|302765565|ref|XP_002966203.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
 gi|300165623|gb|EFJ32230.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
          Length = 916

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/592 (36%), Positives = 343/592 (57%), Gaps = 13/592 (2%)

Query: 65  MQCHGVRADSVTYAELIK--CCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF 122
           MQ  G R + +T+   +K  C  +   + E+  +H  +   G E +  +   L+ M+   
Sbjct: 325 MQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGST 384

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
             ++ A+  FD +P +N+VSW  M++AY D     +A+EL   M R+ + PN  +Y AVL
Sbjct: 385 GAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVL 444

Query: 183 RACDSLIILRQLHCGIIKVG-FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
             C+ +   R +H  ++  G F  +  + + ++ ++A+ G L  A   F+    +D V W
Sbjct: 445 GCCEDVSEARSIHAEVVGNGLFAQESSIANGVVRMFARSGSLEEAMAAFDATVVKDSVSW 504

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV-- 299
           N+ +   +   D+  A+  +  M+  GF  D+ TL SV+  C  L  LELG  +   +  
Sbjct: 505 NTKVAALSAREDLHGAITAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSA 564

Query: 300 -LKYDHDLILNNALLDMYCKCGS-LEDAMSVFSRMI--QKDVISWSTMISGLAQNGYSQE 355
            ++ + D+++ +A+++M  KCGS +++   +F+RM   +KD+++W+TMI+  AQ+G+ ++
Sbjct: 565 AIEVERDVVVESAVMNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHGHGRK 624

Query: 356 ALKLFESMKV-SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR-EHYSC 413
           ALKLF  M+  S ++P+  T V VL  CSHAG VEDG + F   ++  GI+    EHY+C
Sbjct: 625 ALKLFRIMQQRSSVRPDSSTFVSVLSGCSHAGLVEDGIHCFFLAREVLGIEQQPVEHYAC 684

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           ++D+LGR G L+EA   I +MP   D+V W +LLGAC  + + +    AA+  + L   D
Sbjct: 685 LVDVLGRMGYLREAEDFIRKMPLPADSVVWTSLLGACSSYGDLEGGERAARAFIELYRSD 744

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE-PGCSWIEVNKQIHAFNVADSSHPQ 532
              Y++LSNIYA + +W++   VR+ M  R + K  PG S I V  ++H F   D SHPQ
Sbjct: 745 SVGYVVLSNIYAAAGRWEDSIRVREDMAERRVKKRAPGKSSIVVKNRVHEFFARDRSHPQ 804

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
            D+I   L+ L   +   GY PDT  VL D+E EQKE  + YHSEKLAI FGL+S+    
Sbjct: 805 SDEIYAELERLKGLIREAGYVPDTRLVLHDVEEEQKEQLLWYHSEKLAIAFGLISVPHRH 864

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF-QDGNCSCGDYW 643
           +IR+ KNLR+C DCHT  K  A++  + I +RD  R+HHF +DG CSCGDYW
Sbjct: 865 SIRVIKNLRVCKDCHTATKFIARVTQREIAVRDCNRFHHFGKDGECSCGDYW 916



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 195/407 (47%), Gaps = 13/407 (3%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           RA+  +  M   G+  +  ++  ++  C    ++  A+ +H  V   GF  +  +   L+
Sbjct: 216 RALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALV 275

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
            M+ +   ++E+  +F+ M  RN VSW  MI+A+        A  +   M +EG RPN  
Sbjct: 276 TMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKI 335

Query: 177 TYSAVLR-ACDS----LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
           T+   L+ AC S    L     LH  I   G E DV V +AL+ +Y   G +  A   F+
Sbjct: 336 TFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFD 395

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
            +P +++V WN+++  +  N    EA+ L+  MKR   A ++ +  +VL  C  ++    
Sbjct: 396 AIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCEDVS---E 452

Query: 292 GTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
              +H  V+    +  +  + N ++ M+ + GSLE+AM+ F   + KD +SW+T ++ L+
Sbjct: 453 ARSIHAEVVGNGLFAQESSIANGVVRMFARSGSLEEAMAAFDATVVKDSVSWNTKVAALS 512

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
                  A+  F +M+    +P+  T+V V+  C+  G +E G +  + +     ++   
Sbjct: 513 AREDLHGAITAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDV 572

Query: 409 EHYSCMIDLLGRAG-KLQEAVKLIHEMPYE-PDAVTWRALLGACKVH 453
              S +++++ + G  + E  +L   MP +  D V W  ++ A   H
Sbjct: 573 VVESAVMNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQH 619



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 193/387 (49%), Gaps = 28/387 (7%)

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
           +A++VH+ +     E + F+   LL+ + K   +E A  +F ++   +++ W   I A  
Sbjct: 149 QARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWNAAIMACA 208

Query: 152 -DAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDV 207
            + +  D+AL L+  M  EG+ PN  ++ A+L +C    SL + R +H  + ++GF  DV
Sbjct: 209 GNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDV 268

Query: 208 FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
            V +AL+ +Y + G +  +  VF  M  R+ V WN++I  FAQ      A  +Y RM++ 
Sbjct: 269 VVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQE 328

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVH----VLKYDHDLILNNALLDMYCKCGSLE 323
           GF  ++ T  + L+A    +  +LG    +H        + D+++  AL+ MY   G+++
Sbjct: 329 GFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAID 388

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
            A + F  +  K+++SW+ M++    NG ++EA++LF +MK   + PN ++ + VL  C 
Sbjct: 389 RARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCE 448

Query: 384 --------HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435
                   HA  V +G    +S      I  G      ++ +  R+G L+EA+    +  
Sbjct: 449 DVSEARSIHAEVVGNGLFAQES-----SIANG------VVRMFARSGSLEEAMAAF-DAT 496

Query: 436 YEPDAVTWRALLGACKVHRNTDLAICA 462
              D+V+W   + A     +   AI A
Sbjct: 497 VVKDSVSWNTKVAALSAREDLHGAITA 523



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 193/423 (45%), Gaps = 47/423 (11%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           T A L++ C+    + + + +H  ++  G      L N L+ M+ K   L++A   F  +
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS-------- 187
             R + +W T+I+A             +    R   RPN  T  AVL A  S        
Sbjct: 86  RSRGIATWNTLIAAQSSPAAVFDLYTRMKLEERAENRPNRLTIIAVLGAIASGDPSSSSS 145

Query: 188 -LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
                R +H  I     E D+FV +AL+D Y K G + +A  VF+ +   DL+ WN+ I 
Sbjct: 146 SRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWNAAIM 205

Query: 247 GFAQNSD-VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYD 303
             A N +  D AL L +RM   G   ++++  ++L +C   + L L   +H  V  L + 
Sbjct: 206 ACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFL 265

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D+++  AL+ MY +CGS++++++VF  M  ++ +SW+ MI+  AQ G+   A  ++  M
Sbjct: 266 GDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRM 325

Query: 364 KVSRIKPNYITIVGVL-FACSHA------GFVEDGWNHFKSMK----------KFYG--- 403
           +    +PN IT V  L  ACS +           GW     ++            YG   
Sbjct: 326 QQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTG 385

Query: 404 -IDPGREHY-----------SCMIDLLGRAGKLQEAVKLIHEMPYE---PDAVTWRALLG 448
            ID  R  +           + M+   G  G+ +EA++L   M  +   P+ V++ A+LG
Sbjct: 386 AIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLG 445

Query: 449 ACK 451
            C+
Sbjct: 446 CCE 448



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 139/302 (46%), Gaps = 24/302 (7%)

Query: 177 TYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T + +LR C     L   RQLH  I+K G   +  + + L+ +Y+K   L +A   F+ +
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK---RAGFAADQSTLTSVLRA-CTGLALL 289
            +R +  WN++I   A  S      +LY RMK   RA    ++ T+ +VL A  +G    
Sbjct: 86  RSRGIATWNTLI---AAQSSPAAVFDLYTRMKLEERAENRPNRLTIIAVLGAIASGDPSS 142

Query: 290 ELGTQVHVHVLKYD-------HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
              ++    ++  D        DL +  ALLD Y KCG +E A+ VFSR+   D+I W+ 
Sbjct: 143 SSSSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWNA 202

Query: 343 MISGLAQNGYSQE-ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
            I   A N    + AL L   M +  + PN  + V +L +C     +    +    +++ 
Sbjct: 203 AIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEEL 262

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA---CKVHRNTDL 458
            G        + ++ + GR G + E++ +   M    + V+W A++ A   C  HR+   
Sbjct: 263 -GFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVR-NHVSWNAMIAAFAQCG-HRSAAF 319

Query: 459 AI 460
           AI
Sbjct: 320 AI 321


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/575 (39%), Positives = 337/575 (58%), Gaps = 58/575 (10%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF---MLREGVRPNMFTYSAV 181
           L+ A  +F+QMP+RN  SW T+I  + ++  +   + + +F   M  E + PN FT+ +V
Sbjct: 68  LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSV 127

Query: 182 LRACDSLIIL---RQLHCGIIKVGFESDVFVRSAL------------------------- 213
           L+AC     +   +Q+H   +K GF  D FV S L                         
Sbjct: 128 LKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIERE 187

Query: 214 --------------------IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
                               ID Y +LG+ + A  +F++M  R +V WN++I G++QN  
Sbjct: 188 MVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGF 247

Query: 254 VDEALNLYKRMKRA-GFAADQSTLTSVLRACTGLALLELGTQVHVHV----LKYDHDLIL 308
             +A+ +++ MK+      +  TL SVL A + L  LELG  +H++     ++ D   +L
Sbjct: 248 FKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDD--VL 305

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
            +AL+DMY KCG +E A+ VF R+ +++VI+WS MI+G A +G + +A+  F  M+ + +
Sbjct: 306 GSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGV 365

Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
           +P+ +  + +L ACSHAG VE+G  +F  M    G++P  EHY CM+DLLGR G L EA 
Sbjct: 366 RPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAE 425

Query: 429 KLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
           + I  MP +PD V W+ALLGAC++HRN ++    A  ++++ P D G Y+ LSN+YA+  
Sbjct: 426 EFILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQG 485

Query: 489 KWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLV 548
            W EV+E+R  M+   I K+PGCSWI+++  +H F V D SHP+  +IN  L  +  KL 
Sbjct: 486 NWSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLR 545

Query: 549 GVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHT 608
             GY P T  VL +LE E KE+++ YHSEK+A  FGL+S + GK IRI KNLRIC DCH+
Sbjct: 546 LAGYRPITTQVLLNLEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVKNLRICEDCHS 605

Query: 609 FAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             KL +K+  + I +RD  R+HHFQDG+CSC DYW
Sbjct: 606 SIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 157/336 (46%), Gaps = 61/336 (18%)

Query: 182 LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLG----ELRNAECVFNEMPTRD 237
           +  C ++  L Q+H   IK G   D    + ++   A       +L  A  +FN+MP R+
Sbjct: 23  INTCRTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRN 82

Query: 238 LVVWNSIIGGFAQNSDVDEAL---NLYKRMKRAGF-AADQSTLTSVLRACTGLALLELGT 293
              WN+II GF++ SD D+AL    L+  M    F   ++ T  SVL+AC     ++ G 
Sbjct: 83  CFSWNTIIRGFSE-SDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGK 141

Query: 294 QVHVHVLKY-----------------------------------------------DHDL 306
           Q+H   LKY                                               D ++
Sbjct: 142 QIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEV 201

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
           +L N ++D Y + G  + A  +F +M Q+ V+SW+TMISG +QNG+ ++A+++F  MK  
Sbjct: 202 VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKG 261

Query: 367 R-IKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
             I+PNY+T+V VL A S  G +E G W H  +      ID      S +ID+  + G +
Sbjct: 262 EDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLG--SALIDMYSKCGII 319

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           ++A+ +   +P E + +TW A++    +H     AI
Sbjct: 320 EKAIMVFERLPRE-NVITWSAMINGFAIHGQAGDAI 354



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 108/200 (54%), Gaps = 4/200 (2%)

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           E  L N++++ +++    + A++LFD+M +R+VVSW TMIS Y        A+E+   M 
Sbjct: 200 EVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMK 259

Query: 168 R-EGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
           + E +RPN  T  +VL A     SL +   LH      G   D  + SALID+Y+K G +
Sbjct: 260 KGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGII 319

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
             A  VF  +P  +++ W+++I GFA +    +A++ + +M++AG         ++L AC
Sbjct: 320 EKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTAC 379

Query: 284 TGLALLELGTQVHVHVLKYD 303
           +   L+E G +    ++  D
Sbjct: 380 SHAGLVEEGRRYFSQMVSVD 399



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 96/191 (50%), Gaps = 5/191 (2%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           +R + VT   ++       ++E  + +H +    G   +  L + L++M+ K  ++E+A 
Sbjct: 264 IRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAI 323

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
           ++F+++P  NV++W+ MI+ +        A++    M + GVRP+   Y  +L AC    
Sbjct: 324 MVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAG 383

Query: 190 IL---RQLHCGIIKV-GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSI 244
           ++   R+    ++ V G E  +     ++D+  +LG L  AE     MP + D V+W ++
Sbjct: 384 LVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKAL 443

Query: 245 IGGFAQNSDVD 255
           +G    + +V+
Sbjct: 444 LGACRMHRNVE 454


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/619 (36%), Positives = 354/619 (57%), Gaps = 48/619 (7%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL-SGGFEPETFLVNILL 116
           A+  +H M   GVR + VT A ++  C     +   K +H  VL +      +F+   L+
Sbjct: 271 ALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALV 330

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNM 175
           +M+      E+ +++FD M  R +  W  MI+ Y   + + +A+EL + M+ E G+ PN 
Sbjct: 331 DMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNS 390

Query: 176 FTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
            T S+VL AC   +S +    +H  ++K GFE D +V++AL+D+Y+++G +  A  +F  
Sbjct: 391 VTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGS 450

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA------------------GFAADQS 274
           M  +D+V WN++I G+      D+ALNL   M+R                       +  
Sbjct: 451 MNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSV 510

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           TL +VL  C  LA L  G ++H + +K     D+ + +AL+DMY KCG L  + +VF +M
Sbjct: 511 TLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQM 570

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESM-----KVSRIKPNYITIVGVLFACSHAGF 387
             ++VI+W+ +I     +G  +EALKLF  M         I+PN +T + +  + SH+G 
Sbjct: 571 SVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGM 630

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV-TWRAL 446
           V++G N F +MK  +GI+P  +HY+C++DLLGR+G+++EA  LI  MP     V  W +L
Sbjct: 631 VDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSL 690

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQ--DPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
           LGACK+H+N ++   AAK +  LDP   D GT               + + + + M+ +G
Sbjct: 691 LGACKIHQNLEIGEIAAKNLFVLDPNVLDYGT---------------KQSMLGRKMKEKG 735

Query: 505 ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLE 564
           + KEPGCSWIE   ++H F   D SHPQ  +++++L+ L  ++   GY PDT+ VL ++ 
Sbjct: 736 VRKEPGCSWIEHGDEVHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVG 795

Query: 565 GEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIR 624
            E+KE  +  HSE+LAI FGL++ + G TIR+ KNLR+C DCH   K  +K+ ++ I++R
Sbjct: 796 EEEKETMLCGHSERLAIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILR 855

Query: 625 DPIRYHHFQDGNCSCGDYW 643
           D  R+HHF++G CSCGDYW
Sbjct: 856 DVRRFHHFRNGTCSCGDYW 874



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 126/401 (31%), Positives = 210/401 (52%), Gaps = 15/401 (3%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+     M   GV  D+  +  ++K       +   K +H HV   G    T + N L+
Sbjct: 68  QAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLV 127

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           NM+ K   ++ A+ +FD++  R+ VSW +MI+A C  +  + A+ L   ML E V P  F
Sbjct: 128 NMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSF 187

Query: 177 TYSAVLRACDSLI----ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           T  +V  AC +LI    + +Q+H  +++ G +   F  +AL+ +YAKLG +  A+ +F+ 
Sbjct: 188 TLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFDV 246

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
              +DLV WN+II   +QN   +EAL     M ++G   +  TL SVL AC+ L +L  G
Sbjct: 247 FDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCG 306

Query: 293 TQVHVHVLKYDHDLILNN----ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            ++H  VL  ++DLI N+    AL+DMYC C   E    VF  M ++ +  W+ MI+G  
Sbjct: 307 KEIHAFVL-MNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYV 365

Query: 349 QNGYSQEALKLFESMKVS-RIKPNYITIVGVLFACSHA-GFVEDGWNHFKSMKKFYGIDP 406
           +N +  EA++LF  M     + PN +T+  VL AC     F++    H   +K  +G + 
Sbjct: 366 RNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVK--WGFEK 423

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
            +   + ++D+  R G+++ A  +   M  + D V+W  ++
Sbjct: 424 DKYVQNALMDMYSRMGRIEIARSIFGSMNRK-DIVSWNTMI 463



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 35/236 (14%)

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--I 307
            +S   +A++ Y  M  AG   D     +VL+A  G+  L LG Q+H HV K+   L   
Sbjct: 62  SSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTA 121

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + N+L++MY KCG ++ A  VF  +  +D +SW++MI+   +    + A+ LF  M +  
Sbjct: 122 VPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLEN 181

Query: 368 IKPNYITIVGVLFACS------------HAGFVEDG-WNHFKS---------------MK 399
           + P   T+V V  ACS            HA  + +G W  F +                K
Sbjct: 182 VGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTNNALVTMYAKLGRVYEAK 241

Query: 400 KFYGI--DPGREHYSCMIDLLGRAGKLQEAVKLIHEM---PYEPDAVTWRALLGAC 450
             + +  D     ++ +I  L +  + +EA+  +H M      P+ VT  ++L AC
Sbjct: 242 TLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPAC 297


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/554 (40%), Positives = 329/554 (59%), Gaps = 9/554 (1%)

Query: 91  EEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
           ++ K +H  V+  GF  +  L+  LL   V    +  A+ +FD+MP+  +  W T+   Y
Sbjct: 25  KQLKKIHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEMPKPRIFLWNTLFKGY 84

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDV 207
              ++  +++ L   M   GVRP+ FTY  V++A   L +L     LH  ++K GFE   
Sbjct: 85  VRNQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKNGFECLG 144

Query: 208 FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
            V + L+ +Y K GEL +AE +F  M  +DLV WN+ I    Q  +   AL  + +M   
Sbjct: 145 IVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGNSAIALEYFNKMCAD 204

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDA 325
               D  T+ S+L AC  L  L++G +++    K   + ++I+ NA LDM+ KCGS E A
Sbjct: 205 AVQFDSFTVVSMLSACGQLGSLDIGEEIYDRARKEEIECNIIVENARLDMHLKCGSTEAA 264

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
             +F  M Q++V+SWSTMI G A NG S EAL LF  M+   ++PNY+T +GVL ACSHA
Sbjct: 265 RVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMMQNEGLRPNYVTFLGVLSACSHA 324

Query: 386 GFVEDGWNHFKSMKKF--YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
           G V +G  +F  M +     ++P +EHY+CM+DLLGR+G L+EA + I +M  EPD   W
Sbjct: 325 GLVNEGKRYFSLMVRLNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMRVEPDTGIW 384

Query: 444 RALLGACKVHRNTDLAICAAKKILNLDPQDPGTY-ILLSNIYANSQKWDEVAEVRKTMRA 502
            ALLGAC VHR+  L    A  ++   P D G+Y +LLSNIYA + KWD V +VR  MR 
Sbjct: 385 GALLGACAVHRDMILGQKVADVLVETAP-DIGSYHVLLSNIYAAAGKWDCVDKVRSKMRK 443

Query: 503 RGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQD 562
            G  K    S +E + +IH FN  D SHPQ   I + L  +++K+  +GY PDT  V  D
Sbjct: 444 LGTKKVAAYSSVEFDGKIHFFNRGDISHPQSKAIYEKLDEILKKIRNMGYVPDTGSVFHD 503

Query: 563 LEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIV 622
           +E E+KE S+ +HSEKLAI FGL++   G  IR+ KNLR C DCH F+K  +++ ++ I+
Sbjct: 504 VEMEEKESSLSHHSEKLAIAFGLINGRAGHPIRVMKNLRTCDDCHVFSKFVSRLTSREII 563

Query: 623 IRDPIRYHHFQDGN 636
           +RD  R+HHF++G+
Sbjct: 564 MRDKNRFHHFRNGD 577



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 23/212 (10%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++  + M    V+ DS T   ++  C    +++  + +++       E    + N  L+
Sbjct: 194 ALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLDIGEEIYDRARKEEIECNIIVENARLD 253

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           MH+K    E A+VLFD M +RNVVSW+TMI  Y     + +AL L   M  EG+RPN  T
Sbjct: 254 MHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMMQNEGLRPNYVT 313

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFES-DVFVR-------------SALIDIYAKLGEL 223
           +  VL AC         H G++  G     + VR             + ++D+  + G L
Sbjct: 314 FLGVLSACS--------HAGLVNEGKRYFSLMVRLNDKNLEPRKEHYACMVDLLGRSGLL 365

Query: 224 RNAECVFNEMPTR-DLVVWNSIIGGFAQNSDV 254
             A     +M    D  +W +++G  A + D+
Sbjct: 366 EEAYEFIKKMRVEPDTGIWGALLGACAVHRDM 397


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/613 (38%), Positives = 336/613 (54%), Gaps = 40/613 (6%)

Query: 66  QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL 125
           Q HGV         L  C   R   E    +H   +  G + +  +   L   +     L
Sbjct: 28  QQHGVLTADRVAGLLTGCATLRRTGE----LHAAAVRAGVDGDRAVGFRLQRAYAASDRL 83

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
           +    L    P+   V +T+ I A+    ++  AL LL  ML  G+ P   T S+ L AC
Sbjct: 84  DLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC 143

Query: 186 DSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--------------------------- 218
             L + R LH    K+    D +V +AL+ +YA                           
Sbjct: 144 HGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAML 203

Query: 219 ----KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
               K+G L +A  +F+ MP++D + WN++I G+ Q+   +EAL L++ M R+G   D+ 
Sbjct: 204 TCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEV 263

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFS 330
            +   L A   L   E G  +H +V K    + LN     AL+DMYCKCGSLEDA+SVF+
Sbjct: 264 AIILALSAVAQLGTAESGRWLHSYV-KNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFN 322

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            +  KD++ W+ MI+G A +G S++AL++F  ++   + P  IT +G+L ACSH+G V++
Sbjct: 323 SIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDE 382

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G   F+SM++ Y I P  EHY CM+DLLGRAG ++EA  L+  M   PD V W +LL AC
Sbjct: 383 GHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAAC 442

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
           ++H+N  L    A  ++     + G YILLSNIYA    W+EVA VR  M+A GI KEPG
Sbjct: 443 RLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPG 502

Query: 511 CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKED 570
           CS IEV ++++ F   D SHP+ D+I   L+ +   +   G+ P T  VL DL+   KE 
Sbjct: 503 CSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEK 562

Query: 571 SIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYH 630
           ++  HSEKLA+ FGL+S   G+TI+I KNLR C DCH   KL +K+  + IV RD  R+H
Sbjct: 563 ALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFH 622

Query: 631 HFQDGNCSCGDYW 643
           HF DG+C+CGDYW
Sbjct: 623 HFVDGSCTCGDYW 635


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/613 (38%), Positives = 336/613 (54%), Gaps = 40/613 (6%)

Query: 66  QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL 125
           Q HGV         L  C   R   E    +H   +  G + +  +   L   +     L
Sbjct: 27  QQHGVLTADRVAGLLTGCATLRRTGE----LHAAAVRAGVDGDRAVGFRLQRAYAASDRL 82

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
           +    L    P+   V +T+ I A+    ++  AL LL  ML  G+ P   T S+ L AC
Sbjct: 83  DLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC 142

Query: 186 DSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--------------------------- 218
             L + R LH    K+    D +V +AL+ +YA                           
Sbjct: 143 HGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAML 202

Query: 219 ----KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
               K+G L +A  +F+ MP++D + WN++I G+ Q+   +EAL L++ M R+G   D+ 
Sbjct: 203 TCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEV 262

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFS 330
            +   L A   L   E G  +H +V K    + LN     AL+DMYCKCGSLEDA+SVF+
Sbjct: 263 AIILALSAVAQLGTAESGRWLHSYV-KNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFN 321

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            +  KD++ W+ MI+G A +G S++AL++F  ++   + P  IT +G+L ACSH+G V++
Sbjct: 322 SIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDE 381

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G   F+SM++ Y I P  EHY CM+DLLGRAG ++EA  L+  M   PD V W +LL AC
Sbjct: 382 GHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAAC 441

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
           ++H+N  L    A  ++     + G YILLSNIYA    W+EVA VR  M+A GI KEPG
Sbjct: 442 RLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPG 501

Query: 511 CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKED 570
           CS IEV ++++ F   D SHP+ D+I   L+ +   +   G+ P T  VL DL+   KE 
Sbjct: 502 CSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEK 561

Query: 571 SIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYH 630
           ++  HSEKLA+ FGL+S   G+TI+I KNLR C DCH   KL +K+  + IV RD  R+H
Sbjct: 562 ALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFH 621

Query: 631 HFQDGNCSCGDYW 643
           HF DG+C+CGDYW
Sbjct: 622 HFVDGSCTCGDYW 634


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/631 (36%), Positives = 362/631 (57%), Gaps = 17/631 (2%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAEL 80
           F L     V S NT+    S+  D    F    DL R M A        +RAD VT    
Sbjct: 347 FKLNNNKNVVSWNTMVGGFSAAGDIHKTF----DLLRQMLAGGG----DLRADEVTILNA 398

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLV-NILLNMHVKFSLLEEAQVLFDQMPERN 139
           +  C     +   K +H + L   F     LV N  +  + K   L  A  +F  +  + 
Sbjct: 399 VPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKT 458

Query: 140 VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHC 196
           V SW  +I  Y  +     +L+    M   G+ P++FT  ++L AC    SL + +++H 
Sbjct: 459 VNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHG 518

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
            II+   E D FV  +L+ +Y   GEL  A  +F+ M  + LV WN+++ G+ QN   + 
Sbjct: 519 LIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPER 578

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLD 314
           AL+L+++M   G    + ++ SV  AC+ L  L LG + H + LK   + +  +  +++D
Sbjct: 579 ALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVID 638

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           MY K GS+ ++  VF+ + ++ V SW+ M+ G   +G ++EA+KLFE M+ +   P+ +T
Sbjct: 639 MYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELT 698

Query: 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL-IHE 433
            +GVL AC+H+G V +G  +   MK  +G++P  +HY+C+ID+L RAGKL EA+K+   E
Sbjct: 699 FLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEE 758

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
           M  EP    W  LL +C++H+N ++    A K+   +P+ P  Y+LLSN+YA S KWDEV
Sbjct: 759 MSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEV 818

Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG-VGY 552
            +VR+ M+   + K+ GCSWIE+N ++ +F   +SS    ++I K L  ++++ +G +GY
Sbjct: 819 RKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEI-KSLWSVLEREIGKMGY 877

Query: 553 APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
            PDT+ V  DL  E+K + ++ HSEKLAI +GL+  ++G T+R+ KNLRIC DCH  AKL
Sbjct: 878 RPDTSSVQHDLSEEEKTEQLRGHSEKLAITYGLIRTSEGTTLRVYKNLRICVDCHNAAKL 937

Query: 613 TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +K+  + IV+RD  R+HHF++G CSCGDYW
Sbjct: 938 ISKVMEREIVVRDNKRFHHFKNGFCSCGDYW 968



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 173/328 (52%), Gaps = 12/328 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+  D+ T+  ++K C     V+    VH  V+      + F+ N L++ +     + +A
Sbjct: 179 GLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDA 238

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE----GVRPNMFTYSAVLRA 184
             +F  MPERN+VSW +MI  + D  ++++   LL  M+ +       P++ T + VL  
Sbjct: 239 LRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPV 298

Query: 185 C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C     + + + +H   +K+  + +V V +AL+D+Y+K G + +A+ +F     +++V W
Sbjct: 299 CARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSW 358

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAG--FAADQSTLTSVLRACTGLALLELGTQVHVHV 299
           N+++GGF+   D+ +  +L ++M   G    AD+ T+ + +  C   ++L    ++H + 
Sbjct: 359 NTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYS 418

Query: 300 LKYD---HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           LK +   ++ ++ NA +  Y KCGSL  A  VF  +  K V SW+ +I G +Q+   + +
Sbjct: 419 LKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLS 478

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSH 384
           L  +  MK S + P+  T+  +L ACS 
Sbjct: 479 LDAYFQMKSSGLLPDLFTVCSLLSACSQ 506



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 143/269 (53%), Gaps = 12/269 (4%)

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNMFTYSAVLRA 184
           ++++ +FD + ++N+  W  +IS+Y   ++    LE+ + M+ E G+ P+ FT+  V++A
Sbjct: 134 DDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKA 193

Query: 185 CDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C  +  ++    +H  ++K     DVFV +AL+  Y   G + +A  VF  MP R+LV W
Sbjct: 194 CAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSW 253

Query: 242 NSIIGGFAQNSDVDEALNLYKRM----KRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           NS+I  F+ N   +E   L  +M        F  D +TL +VL  C     + +G  VH 
Sbjct: 254 NSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHG 313

Query: 298 HVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
             +K   D ++++NNAL+DMY KCG + DA  +F     K+V+SW+TM+ G +  G   +
Sbjct: 314 LAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHK 373

Query: 356 ALKLFESMKV--SRIKPNYITIVGVLFAC 382
              L   M      ++ + +TI+  +  C
Sbjct: 374 TFDLLRQMLAGGGDLRADEVTILNAVPVC 402


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/599 (36%), Positives = 356/599 (59%), Gaps = 17/599 (2%)

Query: 53  RDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
           +DLP++   ++      ++     Y  L+K C    ++EE K VH  +L  G   ++F  
Sbjct: 17  KDLPQSSSELN------LKQKEQEYLCLVKKC---KSLEEFKQVHVQILKFGLFLDSFCS 67

Query: 113 NILLNMHV--KFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           + +L       ++ ++ A  +F Q+ E     + TMI  Y +    + A+ L   ML+  
Sbjct: 68  SSVLATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQRE 127

Query: 171 VRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
           V P+ FTY  VL+AC  L +++   Q+H  + K+G E DV+V+++LI++Y K  ++  + 
Sbjct: 128 VEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSC 187

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG-FAADQSTLTSVLRACTGL 286
            +F  M  + +  W++II   A  +   E L L++ M R G + A++S L +VL ACT L
Sbjct: 188 AIFRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVLSACTHL 247

Query: 287 ALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
               LG   H  +LK   + ++ +  +L+DMY KCGSL+  + +F  M +K+ +S+S +I
Sbjct: 248 GAFHLGRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVII 307

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI 404
           SGL  +GY ++AL++F  M    ++P+ +T V VL ACSH+G V++G + F  MK  Y I
Sbjct: 308 SGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRI 367

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAK 464
           +P  +HY CM+DL GRAG L+EA +L+  MP + + V WR+LL ACKVH N  L   AA+
Sbjct: 368 EPTMQHYGCMVDLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSACKVHDNLKLGEIAAE 427

Query: 465 KILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFN 524
            +  L   +P  Y++LSN+YA +Q+W+  A++R  M  RG+ + PG S +EV  +++ F 
Sbjct: 428 NLFRLSSHNPSDYLVLSNMYARAQQWENAAKIRTKMINRGLIQTPGYSLVEVKSKVYKFV 487

Query: 525 VADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFG 584
             D S+ +   I K +  +  +L   GY PDT+ V+ D++ E+K + ++ HS+KLAI F 
Sbjct: 488 SQDKSYCKSGNIYKMIHQMEWQLRFEGYMPDTSQVMLDVDEEEKGERLKGHSQKLAIAFA 547

Query: 585 LMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L+  +QG  IRI +NLR+C DCH++ KL + +  + I +RD  R+HHF+DGNCSC DYW
Sbjct: 548 LIHTSQGSAIRIIRNLRMCNDCHSYTKLVSMIYEREITVRDRNRFHHFKDGNCSCRDYW 606


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/593 (38%), Positives = 349/593 (58%), Gaps = 16/593 (2%)

Query: 65   MQCHGVRADSVTYAELIKCC-------LARHA-VEEAKLVHNHVLSGGFEPE-TFLVNIL 115
            M    V  DSVT   + + C       L R   V+E + VH  V+    +PE  FL   L
Sbjct: 482  MISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPAL 541

Query: 116  LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
            + ++     L +   +F+ + E+ ++SW T+IS +      ++AL L + M  +G+ P+ 
Sbjct: 542  MELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDS 601

Query: 176  FTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
            ++ ++ L AC ++   +   Q+H  IIK G  +D FV++ALID+YAK G + +A  +F +
Sbjct: 602  YSLASSLSACGTISFSQLGAQIHGYIIKTGNFND-FVQNALIDMYAKCGFVHSANKMFEK 660

Query: 233  MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
            +  + LV WNS+I GF+QN    EA+ L+ +M       D+ T  SV++AC+ L  LE G
Sbjct: 661  IKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKG 720

Query: 293  TQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
              VH  ++ Y    D  L+ AL DMY KCG L+ A  VF RM ++ ++SWS MI+G   +
Sbjct: 721  KWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMH 780

Query: 351  GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
            G     + LF  M  S IKPN IT + +L ACSHAG VE+G  +F SM +F G++P  +H
Sbjct: 781  GQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEF-GVEPKHDH 839

Query: 411  YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
            ++CM+DLL RAG L  A ++I  +P+  ++  W ALL  C++H+  D+     K +L++D
Sbjct: 840  FACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVD 899

Query: 471  PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSH 530
              D G Y LLSNIYA    WD+  +VR  M+++G+ K PG S IE++K+I+ F   D+SH
Sbjct: 900  TADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSH 959

Query: 531  PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
             Q   I + L++    +    Y  + +  +       KE+++  HSEKLAI FG+++   
Sbjct: 960  SQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGIINTRP 1019

Query: 591  GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            G T+RI KNLR+C DCH+FAK+ +K+  + I++RD  R+H F++G+CSC DYW
Sbjct: 1020 GTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 1072



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 123/438 (28%), Positives = 218/438 (49%), Gaps = 44/438 (10%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFE-----------PETFLVNILLNMHVKFSLL 125
           +A L    L RH     KL+ ++   G FE           P++F+  +L+  +V     
Sbjct: 368 HAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFF 427

Query: 126 EEAQVLFDQMPERNVVSWTTMI--------SAYCDAKMNDK------ALELLIFMLREGV 171
           EEA  L+ +M  ++    +  +        S + D  +  K       L++   M+ E V
Sbjct: 428 EEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISEAV 487

Query: 172 RPNMFTYSAVLRACDSLIIL-----------RQLHCGIIKVGFESDV-FVRSALIDIYAK 219
            P+  T  +V  AC  L  L           R +H  +I+   + ++ F+  AL+++YA 
Sbjct: 488 EPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYAD 547

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
            G LR+   VF  +  + ++ WN++I  F +N   +EAL L+ +M+  G   D  +L S 
Sbjct: 548 TGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASS 607

Query: 280 LRACTGLALLELGTQVHVHVLKY-DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
           L AC  ++  +LG Q+H +++K  + +  + NAL+DMY KCG +  A  +F ++ +K ++
Sbjct: 608 LSACGTISFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLV 667

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKS 397
           +W++MI G +QNGYS EA+ LF+ M ++ +K + +T + V+ ACSH G++E G W H K 
Sbjct: 668 TWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKL 727

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457
           +   YG+       + + D+  + G+LQ A  +   M  E   V+W  ++    +H   +
Sbjct: 728 I--MYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMS-ERSIVSWSVMIAGYGMHGQIN 784

Query: 458 LAICAAKKIL--NLDPQD 473
             I    ++L   + P D
Sbjct: 785 ATISLFNQMLGSGIKPND 802



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 135/332 (40%), Gaps = 67/332 (20%)

Query: 183 RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
           + C +   L QLH  +   G        + LI+ YA++G   +++ VF+  P  D  +W 
Sbjct: 356 KRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWG 415

Query: 243 SII-----GGF----------------------------------------AQNSDVDEA 257
            +I     GGF                                         +N    E 
Sbjct: 416 VLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEG 475

Query: 258 LNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL--------GTQVHVHVLKYDHDL--- 306
           L+++ +M       D  T+ SV  AC+ L  L L        G  VH  V++   D    
Sbjct: 476 LDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELD 535

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
            L  AL+++Y   G+L D   VF  + +K ++SW+T+IS   +NG  +EAL LF  M+  
Sbjct: 536 FLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQ 595

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH---YSCMIDLLGRAGK 423
            + P+  ++   L AC    F + G     +    Y I  G  +    + +ID+  + G 
Sbjct: 596 GLMPDSYSLASSLSACGTISFSQLG-----AQIHGYIIKTGNFNDFVQNALIDMYAKCGF 650

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRN 455
           +  A K+  ++  E   VTW +++  C   +N
Sbjct: 651 VHSANKMFEKIK-EKSLVTWNSMI--CGFSQN 679



 Score = 42.0 bits (97), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 67/180 (37%), Gaps = 33/180 (18%)

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
           +LTS  R  T   L +L    H+ +         +  L++ Y + G  E +  VF    +
Sbjct: 351 SLTSHKRCATSTTLTQL--HAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPK 408

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVS-RIKPNYITIVGVLFACSHAGFVEDGWN 393
            D   W  +I      G+ +EA+ L+  M    + + +      VL ACS  G +  G  
Sbjct: 409 PDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVG-- 466

Query: 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM---PYEPDAVTWRALLGAC 450
                                    G+ G+  E + +  +M     EPD+VT  ++  AC
Sbjct: 467 -------------------------GKNGQASEGLDMFSQMISEAVEPDSVTMLSVTEAC 501


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/590 (38%), Positives = 335/590 (56%), Gaps = 37/590 (6%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M   G   D  TY  ++K C     +     +H  V   G +   F+ N L+ 
Sbjct: 117 ALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIA 176

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR--PNM 175
           ++ K   L EA+ + D+M  ++VVSW +M++ Y      D AL++   M  +GVR  P+ 
Sbjct: 177 LYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREM--DGVRQKPDA 234

Query: 176 FTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235
            T +++L A             +     E+ ++V                 E +F  +  
Sbjct: 235 CTMASLLPA-------------VTNTSSENVLYV-----------------EEMFMNLEK 264

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
           + LV WN +I  + +NS   ++++LY +M +     D  T  SVLRAC  L+ L LG ++
Sbjct: 265 KSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRI 324

Query: 296 HVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H +V   K   +++L N+L+DMY +CG LEDA  VF RM  +DV SW+++IS     G  
Sbjct: 325 HEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQG 384

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
             A+ LF  M+ S   P+ I  V +L ACSH+G + +G  +FK M   Y I P  EH++C
Sbjct: 385 YNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFAC 444

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           ++DLLGR+G++ EA  +I +MP +P+   W ALL +C+V+ N D+ I AA K+L L P++
Sbjct: 445 LVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEE 504

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQI 533
            G Y+LLSNIYA + +W EV  +R  M+ R I K PG S +E+N Q+H F   D+ HPQ 
Sbjct: 505 SGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQS 564

Query: 534 DKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT 593
            +I + L  L+ K+  +GY P T+  L D+E E KE  +  HSEKLAIVF +++ TQ   
Sbjct: 565 KEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHSEKLAIVFAILN-TQESP 623

Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           IRI KNLR+CGDCH  AKL +K+  + IVIRD  R+HHF+DG CSCGDYW
Sbjct: 624 IRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW 673



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 174/365 (47%), Gaps = 40/365 (10%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
           ++  K VH+ V +  F     L   L+  +        A+ +FD +PERNV+ +  MI +
Sbjct: 48  IKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRS 107

Query: 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESD 206
           Y +  + D AL +   M+  G  P+ +TY  VL+AC   D+L I  QLH  + KVG + +
Sbjct: 108 YMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLN 167

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
           +FV + LI +Y K G L  A CV +EM ++D+V WNS++ G+AQN   D+AL++ + M  
Sbjct: 168 LFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDG 227

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAM 326
                D         ACT  +LL   T      + Y  ++ +N                 
Sbjct: 228 VRQKPD---------ACTMASLLPAVTNTSSENVLYVEEMFMN----------------- 261

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
                + +K ++SW+ MIS   +N    +++ L+  M    ++P+ IT   VL AC    
Sbjct: 262 -----LEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLS 316

Query: 387 FVEDG--WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
            +  G   + +   KK     P     + +ID+  R G L++A ++   M +  D  +W 
Sbjct: 317 ALLLGRRIHEYVERKKLC---PNMLLENSLIDMYARCGCLEDAKRVFDRMKFR-DVASWT 372

Query: 445 ALLGA 449
           +L+ A
Sbjct: 373 SLISA 377


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/616 (38%), Positives = 355/616 (57%), Gaps = 54/616 (8%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE---AQVLFD 133
           + ++ +C   RH     K +H H +  G          LL   +  S   E   A+  F 
Sbjct: 19  FPQISRCKTTRHL----KQIHAHFIKTGQIHHPLAAAELLKF-LTLSTQREIKYARKFFS 73

Query: 134 QMPERNVVSWTTMISAYCDAK----MNDKALELLIF---MLREG-VRPNMFTYSAVLRAC 185
           Q+   N  SW T+I A  D+      +  +LE L++   ML +G V PN FT+  VL+AC
Sbjct: 74  QIHHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKAC 133

Query: 186 DSLIIL---RQLHCGIIKVGFESDVFVRSAL----------------------------- 213
             L  +   +QLH  ++K+G  SD FVRS L                             
Sbjct: 134 AKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLW 193

Query: 214 ---IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270
              ID Y ++G+LR +  +F+ MP + +V WN +I G AQN    EA+ ++  M+     
Sbjct: 194 NVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVP 253

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSV 328
            +  TL SVL A + L  +ELG  VH+   K + ++  +L +AL+DMY KCGS++ A+ V
Sbjct: 254 PNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQV 313

Query: 329 FSRMI-QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           F  +  +K+ I+WS +I GLA +G +++AL  F  M+ + + P+ +  +GVL ACSHAG 
Sbjct: 314 FEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGL 373

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           VE+G + +  M    G+ P  EHY CM+DLLGRAG L+EA +LI  MP +PD V  +ALL
Sbjct: 374 VEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALL 433

Query: 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507
           GACK+H N ++    AK ++   P D G+Y+ LSN++A+   W+ V +VR  M+   I K
Sbjct: 434 GACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRK 493

Query: 508 EPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQ 567
           +PGCSWIE++  IH F V D SHP+ + I+  L+ +  +L  VGY P+T  VL +++ ++
Sbjct: 494 DPGCSWIELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKE 553

Query: 568 KEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPI 627
           K+ ++ YHSEK+AI FGL+S      ++I KNLR+C DCH+  KL +K+ N+ I++RD  
Sbjct: 554 KQSALHYHSEKIAIAFGLISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRK 613

Query: 628 RYHHFQDGNCSCGDYW 643
           R+HHF++G+CSC DYW
Sbjct: 614 RFHHFENGSCSCMDYW 629


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/556 (37%), Positives = 336/556 (60%), Gaps = 38/556 (6%)

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG--VRPNMFTYSA 180
           + L+ A  + D+  +  + +  +MI A+C + + +K+ +    +L  G  ++P+ +T + 
Sbjct: 62  TYLDYANQILDRSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNF 121

Query: 181 VLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE----- 232
           +++AC  L +     Q+H   I+ GF++D  V++ LI +YA+LG L +   VFN      
Sbjct: 122 LVQACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPD 181

Query: 233 --------------------------MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
                                     MP +D + WN++I G+AQ  +  EALNL+  M+ 
Sbjct: 182 FVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQL 241

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI--LNNALLDMYCKCGSLED 324
            G   +  ++ SVL ACT L  L+ G   H ++ +    +   L   L+D+Y KCG ++ 
Sbjct: 242 EGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDK 301

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           AM VF  M +K+V +WS+ ++GLA NG+ ++ LKLF  MK   + PN +T V VL  CS 
Sbjct: 302 AMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSV 361

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
            GFV++G  HF SM+  +GI+P  +HY C++DL  RAG+L++AV +I +MP +  A  W 
Sbjct: 362 VGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWS 421

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
           +LL A ++++N +L + A+KK+L L+  + G Y+LLSNIYA+S  WD V+ VR++M+++G
Sbjct: 422 SLLHASRMYKNLELGVLASKKMLELETSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKG 481

Query: 505 ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLE 564
           + K+PGCS +EVN ++H F V D SHP+ ++I+   K + ++L   GY  DT  V+ D++
Sbjct: 482 VRKQPGCSVMEVNGEVHEFFVGDKSHPKYNEIDAVWKDISRRLRLAGYKADTTPVMFDID 541

Query: 565 GEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIR 624
            E+KED++  HSEK AI FG+MSL     IRI KNLR+CGDCH  + + +K+ N+ I++R
Sbjct: 542 EEEKEDALCLHSEKAAIAFGIMSLKADVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVR 601

Query: 625 DPIRYHHFQDGNCSCG 640
           D  R+HHF+DG    G
Sbjct: 602 DRNRFHHFKDGRGYLG 617



 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/494 (39%), Positives = 310/494 (62%), Gaps = 8/494 (1%)

Query: 158  KALELLIFMLRE--GVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSA 212
            K  E+L  M+R   G RPN  T+ +++ AC       +   +H  ++K G   +V V +A
Sbjct: 618  KCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNA 677

Query: 213  LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
            L+++Y K G+L ++  +F ++  ++LV WN++I    QN   +E L  +   +  G   D
Sbjct: 678  LMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPD 737

Query: 273  QSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFS 330
            Q+T  +VLR C  + ++ L   +H  ++   ++ +  +  ALLD+Y K G LED+ +VF 
Sbjct: 738  QATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFL 797

Query: 331  RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
             +   D ++W+ M++  A +GY ++A+K FE M    + P+++T   +L ACSH+G VE+
Sbjct: 798  EITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEE 857

Query: 391  GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
            G  +F++M K Y I+P  +HYSCM+DL+GR+G LQ+A  LI EMP EP +  W ALLGAC
Sbjct: 858  GRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGAC 917

Query: 451  KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
            +V+++T L   AAK++  L+P+D   YI+LSNIY+ S  W + + +R  M+ +G+ +  G
Sbjct: 918  RVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSASGLWKDASRIRNLMKQKGLVRASG 977

Query: 511  CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG-VGYAPDTNYVLQDLEGEQKE 569
             S+IE   +IH F V D SHP+ +KI K LK + +K+   +G+   T +VL D++ + KE
Sbjct: 978  YSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSELGFKSRTEFVLHDVDEDVKE 1037

Query: 570  DSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRY 629
            + I  HSEK+A+ FGL+ ++  + I IRKNLRICGDCH  AK  + +E + I+IRD  R+
Sbjct: 1038 EMINQHSEKIAMAFGLLVISPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRF 1097

Query: 630  HHFQDGNCSCGDYW 643
            HHF +G+CSC DYW
Sbjct: 1098 HHFLEGSCSCRDYW 1111



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 138/270 (51%), Gaps = 6/270 (2%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G R + VT+  +I  C+     EE   +H  V+  G   E  +VN L+N++ K   L  +
Sbjct: 632 GFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISS 691

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
             LF+ +  +N+VSW TMI  +    + ++ L         G++P+  T+ AVLR C+ +
Sbjct: 692 CKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDI 751

Query: 189 IILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
            ++R    +H  I+  GF ++  + +AL+D+YAKLG L ++  VF E+ + D + W +++
Sbjct: 752 GVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAML 811

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT---QVHVHVLKY 302
             +A +    +A+  ++ M   G + D  T T +L AC+   L+E G    +      + 
Sbjct: 812 AAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRI 871

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           +  L   + ++D+  + G L+DA  +   M
Sbjct: 872 EPRLDHYSCMVDLMGRSGLLQDAYGLIKEM 901


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/647 (35%), Positives = 351/647 (54%), Gaps = 47/647 (7%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCH-GVRADSVTYAELIKCCLARHAVEEAKLVHN 98
           +SLL D +R       PRA    +    H G R D +++  ++K      A+ E   +H 
Sbjct: 83  NSLLRDLSR----SGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHG 138

Query: 99  HVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
                    + F+   L++M+     +  A+ +FD+M +R+VV+W TMI  YC   + D+
Sbjct: 139 FAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDE 198

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRAC-------------DSLI--------------IL 191
           A +L   M    V P+      ++ AC             D LI              + 
Sbjct: 199 AFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVT 258

Query: 192 RQLHCGIIKVGFE-------SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
                G + +  E        ++FV +A++  Y+K G L +A  +F++   +DLV W ++
Sbjct: 259 MYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTM 318

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKY 302
           I  +A++    EAL +++ M  +G   D  T+ SV+ AC  L  L+    VH   H+   
Sbjct: 319 ISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGL 378

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
           +  L ++NAL++MY KCG L+ A  VF +M  ++V+SWS+MI+  A +G + ++L LF  
Sbjct: 379 ESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQ 438

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           MK   ++PN +T VGVL+ CSH+G VE+G   F SM   Y I P  EHY CM+DL GRA 
Sbjct: 439 MKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRAN 498

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
            L+EA+++I  MP  P+ V W +L+ AC+VH   +L   AAK+IL L+P   G  +L+SN
Sbjct: 499 LLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSN 558

Query: 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKH 542
           IYA   +WD V  +R  M  + + KE G S I++N + H F + D  H Q ++I   L  
Sbjct: 559 IYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTKLYE 618

Query: 543 LIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK------TIRI 596
           ++ KL   GY PD   VL D+E E+K+D + +HSEKLA+ FGLM+  + +       IRI
Sbjct: 619 VVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNKEKEEEKGSCGVIRI 678

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KNLR+C DCH F KL +K+    I++RD  R+H ++DG CSC DYW
Sbjct: 679 VKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHRYKDGLCSCRDYW 725



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 104/208 (50%), Gaps = 3/208 (1%)

Query: 182 LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM-PTRDLVV 240
           L  C SL  ++QLH  I++      +      +   +    L  A  +F+ + P  + +V
Sbjct: 22  LSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSFSSSSINLSYALNLFSSISPLPESIV 81

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           +NS++   +++ +    +  Y+R++  G   D+ +   +L+A + ++ L  G ++H    
Sbjct: 82  FNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHGFAF 141

Query: 301 KYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K     D  +   L+DMY  CG +  A +VF  M Q+DV++W+TMI    + G   EA K
Sbjct: 142 KIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFK 201

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAG 386
           LFE MK S + P+ + +  ++ AC   G
Sbjct: 202 LFEEMKDSNVMPDEMILCNIVSACGRTG 229


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/574 (39%), Positives = 334/574 (58%), Gaps = 24/574 (4%)

Query: 82  KCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL-----LEEAQVLFDQMP 136
           +C  + H +++A   H  +L  G   ++++   L+  +   S       E +  +FD + 
Sbjct: 63  QCTTSLHHLKQA---HALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVR 119

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC-DSLIILR--Q 193
           + NV  W  MI    +     KA+ L   M+    RPN +TY AVL+AC D+ ++    Q
Sbjct: 120 KPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQ 179

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNS 252
           +H  ++K G   D  + S+ I +YA  G L  A  + ++     D V      G F    
Sbjct: 180 VHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPDRKGCFM--- 236

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNN 310
              EAL ++ +M++      +  L SVL AC  L  L+ G  +H +  +     D +L  
Sbjct: 237 ---EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGT 293

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           +L+DMY KCG ++ A  VF +M  K+V SW+ MI GLA +G +++A+ LF  M    I P
Sbjct: 294 SLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INP 350

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           N IT VGVL AC+H G V+ G   F SM+K YG++P  EHY C++DLLGRAG L EA K+
Sbjct: 351 NEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKV 410

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
           +  +P EP    W ALLGAC+ H N +L     K +L L+PQ+ G Y LLSNIYA + +W
Sbjct: 411 VSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRW 470

Query: 491 DEVAEVRKTMRARGITKEPGCSWIEVNK-QIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549
           +EV EVRK M+ RGI   PG S I++ + ++H F + D SHPQ+  I + L  + ++L  
Sbjct: 471 EEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQM 530

Query: 550 VGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
            GY PD + VL D++ E+KE ++  HSEKLAI FGL++ + G TIRI KNLR+C DCH+ 
Sbjct: 531 EGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSA 590

Query: 610 AKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KL +++ N+ I++RD IRYHHF++G CSC D+W
Sbjct: 591 TKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 624



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 181/415 (43%), Gaps = 50/415 (12%)

Query: 48  RFCYQRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE 106
           + C + + P +A+   + M     R +  TY  ++K C     V E   VH H++  G  
Sbjct: 131 KVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLG 190

Query: 107 PETFLVNILLNMHVKFSLLEEA-QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
            +  +++  + M+  F  L EA ++L D+  E + V        + +      ALE+   
Sbjct: 191 GDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPDRKGCFME------ALEIFHQ 244

Query: 166 MLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           M +E +RP  F   +VL AC +L  L   R +H    +   + D  + ++L+D+YAK G 
Sbjct: 245 MQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGR 304

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           +  A  VF +M  +++  WN++IGG A +   ++A++L+ +M       ++ T   VL A
Sbjct: 305 IDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNA 361

Query: 283 CTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
           C    L++ G             L + N++   Y                ++  +  +  
Sbjct: 362 CAHGGLVQKG-------------LTIFNSMRKEYG---------------VEPQIEHYGC 393

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           ++  L + G   EA K+  S+     +P       +L AC   G VE G    K + +  
Sbjct: 394 IVDLLGRAGLLTEAEKVVSSIPT---EPTPAVWGALLGACRKHGNVELGERVGKILLELE 450

Query: 403 GIDPGREHYSCMIDLLGRAGKLQ---EAVKLIHEMPYEPDAVTWRALLGACKVHR 454
             + GR  Y+ + ++  +AG+ +   E  KL+ E   +    T    LG  +VH+
Sbjct: 451 PQNSGR--YTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHK 503



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 78/184 (42%), Gaps = 16/184 (8%)

Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSL---------- 322
            ST TS L     L LL       +H LK  H LIL    L      GSL          
Sbjct: 44  HSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTN 103

Query: 323 -----EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
                E ++ VF  + + +V  W+ MI    +N    +A+ L+  M V+  +PN  T   
Sbjct: 104 RYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPA 163

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           VL ACS AG V +G      + K +G+       S  I +    G+L EA +++ +   E
Sbjct: 164 VLKACSDAGVVAEGVQVHAHLVK-HGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGE 222

Query: 438 PDAV 441
            DAV
Sbjct: 223 VDAV 226


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/581 (36%), Positives = 341/581 (58%), Gaps = 6/581 (1%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+R   VT A L+K C      +     H++VL+ G   + F++  L++M+        A
Sbjct: 241 GLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSA 300

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
            ++FD M  R+++SW  MIS Y    M  ++  L   +++ G   +  T  +++R C   
Sbjct: 301 ALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQT 360

Query: 189 IIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             L   R LH  II+   ES + + +A++D+Y+K G ++ A  VF  M  ++++ W +++
Sbjct: 361 SDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAML 420

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YD 303
            G +QN   ++AL L+ +M+    AA+  TL S++  C  L  L  G  VH H ++  Y 
Sbjct: 421 VGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYA 480

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQ-KDVISWSTMISGLAQNGYSQEALKLFES 362
            D ++ +AL+DMY KCG +  A  +F+     KDVI  ++MI G   +G+ + AL ++  
Sbjct: 481 FDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSR 540

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           M   R+KPN  T V +L ACSH+G VE+G   F SM++ + + P  +HY+C++DL  RAG
Sbjct: 541 MIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAG 600

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
           +L+EA +L+ +MP++P      ALL  C+ H+NT++ I  A ++++LD  + G Y++LSN
Sbjct: 601 RLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSN 660

Query: 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKH 542
           IYA ++KW+ V  +R  MR +G+ K PG S IEV  +++ F  +D SHP    I + L++
Sbjct: 661 IYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLEN 720

Query: 543 LIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
           L  ++   GY PDT+ VL+D+    K   +  HSE+LAI FGL+S   G  I+I KNLR+
Sbjct: 721 LRLEVEAEGYIPDTSCVLRDVNEPMKVKLLWGHSERLAIAFGLLSTPCGSLIKITKNLRV 780

Query: 603 CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           C DCH   K  +K+  + I++RD  R+HHF +G CSC D+W
Sbjct: 781 CVDCHNVTKYISKIVQREIIVRDANRFHHFVNGKCSCNDFW 821



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 179/362 (49%), Gaps = 13/362 (3%)

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ--MPERNVVSWTTMISAYC 151
           K +H  ++      E+FL   L+ ++     L  A+ +FDQ  +PE  V +   MI+ + 
Sbjct: 64  KSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCN--AMIAGFL 121

Query: 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVF 208
             + + +   L   M    +  N +T    L+AC  L+   +  ++    ++ GF   ++
Sbjct: 122 RNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLY 181

Query: 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           V S++++   K G L +A+ VF+ MP +D+V WNSIIGG+ Q     E++ ++  M   G
Sbjct: 182 VGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGG 241

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAM 326
                 T+ ++L+AC    L ++G   H +VL     +D+ +  +L+DMY   G    A 
Sbjct: 242 LRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAA 301

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            VF  M  + +ISW+ MISG  QNG   E+  LF  +  S    +  T+V ++  CS   
Sbjct: 302 LVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTS 361

Query: 387 FVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
            +E+G   H   ++K   ++      + ++D+  + G +++A  +   M  + + +TW A
Sbjct: 362 DLENGRILHSCIIRK--ELESHLVLSTAIVDMYSKCGAIKQATIVFGRMG-KKNVITWTA 418

Query: 446 LL 447
           +L
Sbjct: 419 ML 420



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 147/286 (51%), Gaps = 9/286 (3%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           +P +      +   G   DS T   LI+ C     +E  +++H+ ++    E    L   
Sbjct: 328 IPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTA 387

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           +++M+ K   +++A ++F +M ++NV++WT M+         + AL+L   M  E V  N
Sbjct: 388 IVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAAN 447

Query: 175 MFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF- 230
             T  +++  C    SL   R +H   I+ G+  D  + SALID+YAK G++ +AE +F 
Sbjct: 448 SVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFN 507

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           NE   +D+++ NS+I G+  +     AL +Y RM       +Q+T  S+L AC+   L+E
Sbjct: 508 NEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVE 567

Query: 291 LGTQVHVHVLKYDHDLILNN----ALLDMYCKCGSLEDAMSVFSRM 332
            G  +  H ++ DHD+   +     L+D++ + G LE+A  +  +M
Sbjct: 568 EGKAL-FHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQM 612



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 173 PNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           P++F+ S + +  ++LI ++ +H  IIK    ++ F+ + LI +Y+ LG L +A  VF++
Sbjct: 46  PSVFS-SLLHQFSNTLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQ 104

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
               +  V N++I GF +N    E   L++ M       +  T    L+ACT L   E+G
Sbjct: 105 CSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVG 164

Query: 293 TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
            ++    ++  +   L + +++++   K G L DA  VF  M +KDV+ W+++I G  Q 
Sbjct: 165 MEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQK 224

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           G   E++++F  M    ++P+ +T+  +L AC  +G  + G
Sbjct: 225 GLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVG 265


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/594 (37%), Positives = 337/594 (56%), Gaps = 73/594 (12%)

Query: 87  RHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTM 146
           RH+V    L+ NH LS    P  F  N LL    + +                  +W T 
Sbjct: 75  RHSV----LIFNHFLSF---PNIFAYNALLKAFSQHN------------------AWHTT 109

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGF 203
           IS +     N++       +L     P+ +T+++VL+AC  L  +   +++HC + K G 
Sbjct: 110 ISYF-----NNQ------LVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGC 158

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF--------------- 248
           ES++FVR++L+D+Y K+G    A+ +F+EM  RD+V WN++I G+               
Sbjct: 159 ESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDG 218

Query: 249 ----------------AQNSDVDEALNLYKRMK-RAGFAADQSTLTSVLRACTGLALLEL 291
                           A+N    +A+ L+++M+   G A +  TL SVL AC  L  L+L
Sbjct: 219 MMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDL 278

Query: 292 GTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G  +H  +   K +  L L NAL DMY KCG + +A  VF  M ++DVISWS +I GLA 
Sbjct: 279 GKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAM 338

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
            GY+ EA   F  M    ++PN I+ +G+L AC+HAG V+ G  +F  M + YGI P  E
Sbjct: 339 YGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIE 398

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
           HY C++DLL RAG+L +A  LI+ MP +P+ + W ALLG C+++++ +       +IL L
Sbjct: 399 HYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILEL 458

Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
           D    G+ + L+N+YA+  + D+ A  R  MR     K PGCSWIE+N  ++ F + DSS
Sbjct: 459 DSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSS 518

Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
           HPQ  +I   ++ L  K+   GY P T+ V+ +++ E+KED++  HSEKLA+ FGL++ +
Sbjct: 519 HPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTS 578

Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +G TIRI KNLR+C DCH   K+ +K+  + IV+RD  R+HHF+DG CSC DYW
Sbjct: 579 EGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCSCNDYW 632



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 147/317 (46%), Gaps = 47/317 (14%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D  T+  ++K C     V E + VH  V   G E   F+ N L++++ K      AQ LF
Sbjct: 126 DEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLF 185

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDK-------------------------------ALE 161
           D+M  R+VVSW T+IS YC + M DK                               A+E
Sbjct: 186 DEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIE 245

Query: 162 LLIFMLRE-GVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIY 217
           L   M  E G+ PN  T  +VL AC  L  L   + +H  I +   E  +F+ +AL D+Y
Sbjct: 246 LFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMY 305

Query: 218 AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT 277
           AK G +  A+ VF+EM  RD++ W+ II G A     +EA N +  M   G   +  +  
Sbjct: 306 AKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFM 365

Query: 278 SVLRACT-------GLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFS 330
            +L ACT       GL   ++  QV+    K +H       ++D+  + G L+ A S+ +
Sbjct: 366 GLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEH----YGCVVDLLSRAGRLDQAESLIN 421

Query: 331 RM-IQKDVISWSTMISG 346
            M +Q +VI W  ++ G
Sbjct: 422 SMPMQPNVIVWGALLGG 438



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 21/192 (10%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+  + VT   ++  C    A++  K +H  +     E   FL N L +M+ K   + EA
Sbjct: 255 GLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEA 314

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +F +M ER+V+SW+ +I         ++A      M+ +G+ PN  ++  +L AC   
Sbjct: 315 KGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACT-- 372

Query: 189 IILRQLHCGIIKVGFE------------SDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
                 H G++  G E              +     ++D+ ++ G L  AE + N MP +
Sbjct: 373 ------HAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQ 426

Query: 237 -DLVVWNSIIGG 247
            +++VW +++GG
Sbjct: 427 PNVIVWGALLGG 438


>gi|297734415|emb|CBI15662.3| unnamed protein product [Vitis vinifera]
          Length = 657

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/638 (35%), Positives = 353/638 (55%), Gaps = 55/638 (8%)

Query: 13  KPSSQARQFSLTITPPVASCNTITRN-SSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVR 71
           +P  +     L +        T  R  SS L     +  + +    A++    ++ +G  
Sbjct: 68  RPKPKPSTIELNVGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELFEILELNGAY 127

Query: 72  -ADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
             DS TY  L+  C+   ++   K V N++++ G +P+ +L N +L MHVK  ++ +A+ 
Sbjct: 128 DMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARR 187

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           LFD+MPE+N++SW T+I    DA    +A  L + M ++        +  ++RA   L +
Sbjct: 188 LFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGL 247

Query: 191 L---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           +   RQLH   +K G   DVFV  ALID+Y+K G + +A+CVF++MP +  V WNSII G
Sbjct: 248 IFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAG 307

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--D 305
           +A +   +EAL++Y  M+ +G   D  T + ++R C  LA LE   Q H  ++++    D
Sbjct: 308 YALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLD 367

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           ++ N AL+D+Y K G +EDA  VF  M  K+VISW+ +I+G   +G   EA+++FE M  
Sbjct: 368 IVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLH 427

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
             + PN++T + VL ACS++G  + GW  F+SM + + I P   HY+CMI+LLGR G L 
Sbjct: 428 EGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLD 487

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           EA  LI + P++P    W ALL AC+VH+N +L   AA+K+  + P+    Y++L NIY 
Sbjct: 488 EAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYN 547

Query: 486 NSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQ 545
            S + +E A +                                    + +I+KH      
Sbjct: 548 RSGRLEEAAAL------------------------------------MLEISKH------ 565

Query: 546 KLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGD 605
                GY P   ++L D++ EQ+E  + YHSEKLAI FGL++ +    ++I ++ RICGD
Sbjct: 566 -----GYVPQDKFLLPDVD-EQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRICGD 619

Query: 606 CHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           CH+  KL A +  + IV+RD  R+HHF+DG+CSCGDYW
Sbjct: 620 CHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 657


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/577 (37%), Positives = 335/577 (58%), Gaps = 7/577 (1%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R +S T+   +  C     ++ A+ V     + G+  + F+ + LL+++ +   +EEA  
Sbjct: 104 RPNSTTFTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFVCSALLHLYSRCGAMEEAIR 163

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           +FD MP ++ V+W+TM++ +  A    +AL +   M   GV  +      V++AC S   
Sbjct: 164 VFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGN 223

Query: 191 LR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
            R    +H  +++     DV   ++L+ +YAK G L  A  VF  MP R+ V W+++I G
Sbjct: 224 ARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISG 283

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDL 306
           FAQN    EAL+L++ ++  G       L S L AC  +  L+LG  +H  +L+  +   
Sbjct: 284 FAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRRLEWQC 343

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
           IL  A+LDMY KCGSLE A  +F+++  +D++ W+ +I+    +G   +AL LF+ +  +
Sbjct: 344 ILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNET 403

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
            IKP++ T   +L A SH+G VE+G   F  M K +GI+P  +HY C++DLL R+G ++E
Sbjct: 404 GIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEE 463

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           A  ++  M  EP    W  LL  C  ++  +L    AKKIL L P+D G   L+SN+YA 
Sbjct: 464 ANDMLASMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSNLYAA 523

Query: 487 SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
           ++KWD+V E+RK M+  G  K PG S IEV    HAF + D SHPQ  +I K +  L  +
Sbjct: 524 AKKWDKVREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAKLNSE 583

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           +  +GY P T +V  DL+ +Q    + YHSE+LAI FGL++ + G  + I KNLR+CGDC
Sbjct: 584 MRKLGYVPRTEFVYHDLDEDQL---LSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDC 640

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           H   K  +K+ ++ IV+RD  R+HHF+DG CSCGDYW
Sbjct: 641 HDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 161/321 (50%), Gaps = 19/321 (5%)

Query: 143 WTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGII 199
           W  ++SA+  A     AL +    L    RPN  T++  L AC  L  L     +     
Sbjct: 76  WNGLLSAHSRAGAPGAALRVF-RALPSSARPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN 259
             G+  DVFV SAL+ +Y++ G +  A  VF+ MP +D V W++++ GF       EAL 
Sbjct: 135 AAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALA 194

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYC 317
           +Y RM+  G + D+  +  V++AC       +G  VH  +L++    D++   +L+ MY 
Sbjct: 195 MYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYA 254

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           K G L+ A  VF  M  ++ ++WS +ISG AQNG + EAL LF  ++   ++P    +V 
Sbjct: 255 KNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVS 314

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM-----IDLLGRAGKLQEAVKLIH 432
            L AC+  GF++ G       K  +G    R  + C+     +D+  + G L+ A KL +
Sbjct: 315 ALLACASVGFLKLG-------KSIHGFILRRLEWQCILGTAVLDMYSKCGSLESARKLFN 367

Query: 433 EMPYEPDAVTWRALLGACKVH 453
           ++    D V W A++  C  H
Sbjct: 368 KLSSR-DLVLWNAIIACCGTH 387



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 173/364 (47%), Gaps = 34/364 (9%)

Query: 56  PRAMKAMHA-MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           P    AM++ M+ HGV  D V    +I+ C++         VH  +L      +      
Sbjct: 189 PVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTS 248

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           L++M+ K   L+ A  +F  MP RN V+W+ +IS +       +AL+L   +  +G++P 
Sbjct: 249 LVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPC 308

Query: 175 MFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
            +   + L AC S+  L   + +H G I    E    + +A++D+Y+K G L +A  +FN
Sbjct: 309 SWALVSALLACASVGFLKLGKSIH-GFILRRLEWQCILGTAVLDMYSKCGSLESARKLFN 367

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           ++ +RDLV+WN+II     +    +AL L++ +   G   D +T  S+L A +   L+E 
Sbjct: 368 KLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEE 427

Query: 292 GTQVHVHVLKYDHDLILNN-----------ALLDMYCKCGSLEDAMSVFSRMIQKDVIS- 339
           G        K+  D ++              ++D+  + G +E+A  + + M  +  I+ 
Sbjct: 428 G--------KFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAI 479

Query: 340 WSTMISGLAQNGYSQEALKLFESM--KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           W  ++SG   N    + L+L E++  K+  ++P  I   GVL   S+       W+  + 
Sbjct: 480 WVILLSGCLNN----KKLELGETIAKKILELRPEDI---GVLALVSNLYAAAKKWDKVRE 532

Query: 398 MKKF 401
           ++K 
Sbjct: 533 IRKL 536


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/584 (36%), Positives = 352/584 (60%), Gaps = 15/584 (2%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V A+S  Y  +++   A   V++ + VH H++   +     L+  L+ +      +    
Sbjct: 5   VAANSAAYEAIVR---AGPRVKQLQQVHAHLIVTSYGRSRSLLTKLITLACSARAIAYTH 61

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---D 186
           +LF  +P  +   + ++I +    ++    +     ML   V P+ +T+++V+++C    
Sbjct: 62  LLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLS 121

Query: 187 SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
           +L I + +HC  +  GF  D +V++AL+  Y+K G++  A  VF+ MP + +V WNS++ 
Sbjct: 122 ALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVS 181

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDH 304
           GF QN   ++A+ ++ +M+ +GF  D +T  S+L AC     + LG+ VH +++    D 
Sbjct: 182 GFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDV 241

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           ++ L  AL+++Y +CG +  A  VF +M + +V +W+ MIS    +GY ++A+ LF  M+
Sbjct: 242 NVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKME 301

Query: 365 --VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
                I PN +T V VL AC+HAG VEDG + +K M + Y + PG EH+ C++D+LGRAG
Sbjct: 302 DDCGSI-PNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAG 360

Query: 423 KLQEAVKLIHEMPYEPDAVT---WRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
            L EA + I ++    +A     W A+LGACK+HRN DL +  AK+++ L+P++PG +++
Sbjct: 361 FLDEAYRFIQQLDATGNATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPENPGHHVM 420

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LSNIYA S K DEV+ +R  M    + K+ G S IEV  + + F++ D SH +  +I ++
Sbjct: 421 LSNIYALSGKTDEVSHIRDRMMRNNLRKQVGYSIIEVENKTYLFSMGDESHQETGEIYRY 480

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
           L+ LI +   +GYAP +  V+  +E E+KE +++YHSEKLA+ FGL+  T    I + KN
Sbjct: 481 LETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLK-TVDSAITVVKN 539

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           LRIC DCH+  K  + + N+ I++RD +R+HHFQ+G+CSC DYW
Sbjct: 540 LRICEDCHSAFKYISIVSNRQIIVRDKLRFHHFQNGSCSCLDYW 583



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 146/279 (52%), Gaps = 13/279 (4%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M    V   + T+  +IK C    A++  K VH H +  GF  +T++   L+  + K   
Sbjct: 98  MLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGD 157

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           +E A+ +FD+MPE++VV+W +++S +    + + A+ +   M   G  P+  T+ ++L A
Sbjct: 158 MEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSA 217

Query: 185 C---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C    ++ +   +H  I+  G + +V + +ALI++Y++ G++  A  VF++M   ++  W
Sbjct: 218 CAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAW 277

Query: 242 NSIIGGFAQNSDVDEALNLYKRMK-RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
            ++I  +  +    +A++L+ +M+   G   +  T  +VL AC    L+E G  V+  + 
Sbjct: 278 TAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRMT 337

Query: 301 KYDHDLIL----NNALLDMYCKCGSLEDAMSVFSRMIQK 335
           +  + LI     +  ++DM  + G L++A     R IQ+
Sbjct: 338 E-SYRLIPGVEHHVCIVDMLGRAGFLDEAY----RFIQQ 371



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 131/286 (45%), Gaps = 37/286 (12%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++  + M+  G   DS T+  L+  C    A+     VH +++S G +    L   L+N
Sbjct: 192 AIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALIN 251

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNMF 176
           ++ +   + +A+ +FD+M E NV +WT MISAY       +A++L   M  + G  PN  
Sbjct: 252 LYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNV 311

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           T+ AVL AC         H G+++ G    V+ R  + + Y  +  + +  C+ + +   
Sbjct: 312 TFVAVLSAC--------AHAGLVEDG--RSVYKR--MTESYRLIPGVEHHVCIVDMLGR- 358

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
                     GF     +DEA    +++   G A   +  T++L AC      +LG ++ 
Sbjct: 359 ---------AGF-----LDEAYRFIQQLDATGNATAPALWTAMLGACKMHRNYDLGVEIA 404

Query: 297 VHVLKYD-----HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
             ++  +     H ++L+N    +Y   G  ++   +  RM++ ++
Sbjct: 405 KRLIALEPENPGHHVMLSN----IYALSGKTDEVSHIRDRMMRNNL 446


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/558 (39%), Positives = 329/558 (58%), Gaps = 37/558 (6%)

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
           + L  A+ +F  +       + ++I A   +K   +AL L   ML+ G++P+  TY  V+
Sbjct: 114 TFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVI 173

Query: 183 RACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAK---LG--------------- 221
           +AC+   +      +H  ++K GFE D ++ S+LI +YA    LG               
Sbjct: 174 KACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVV 233

Query: 222 -------------ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
                        E+ +A  VF+ M  RD++ WN++I G+A     +EAL L+ +M+  G
Sbjct: 234 SWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVG 293

Query: 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAM 326
               ++T+ S+L AC  L  L+ G  +H ++   + + + I+  AL+DMY KCG +  A 
Sbjct: 294 VKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLAT 353

Query: 327 SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386
            VF+ M  KDV++W+T+I+G+A +G  +EA +LF+ MK + ++PN IT V +L ACSHAG
Sbjct: 354 QVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAG 413

Query: 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446
            V++G      M   YGI+P  EHY C+IDLL RAG L+EA++LI  MP EP+     AL
Sbjct: 414 MVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGAL 473

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           LG C++H N +L     K+++NL P   G YILLSNIYA ++KWD+  +VR  M+  GI+
Sbjct: 474 LGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGIS 533

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL-VGVGYAPDTNYVLQDLEG 565
           K PG S IE+   +H F   D SHP+ +KI + L  +  +L   +GY+ DT  VL D+E 
Sbjct: 534 KVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEE 593

Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
           E KE ++  HSEKLAI +GL+ L   + IRI KNLR+C DCH   KL +K+  + I++RD
Sbjct: 594 EDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRD 653

Query: 626 PIRYHHFQDGNCSCGDYW 643
             R+HHF+DG CSC D+W
Sbjct: 654 RNRFHHFEDGECSCLDFW 671



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 189/425 (44%), Gaps = 68/425 (16%)

Query: 41  SLLDDFTRFCYQRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           SL +   R       P  A+   H M   G++ D +TY  +IK C          LVH H
Sbjct: 132 SLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTH 191

Query: 100 VLSGGFEPETFLV-------------------------------NILLNMHVKFSLLEEA 128
           V+  GFE ++++V                               N +++ +VK   +  A
Sbjct: 192 VVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHA 251

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           +++FD+M  R+V+SW TMI+ Y      ++AL L   M   GV+P   T  ++L AC  L
Sbjct: 252 RMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHL 311

Query: 189 IILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
             L +   LH  I     E +  V +AL+D+YAK G++  A  VFN M ++D++ WN+II
Sbjct: 312 GALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTII 371

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD 305
            G A + +V EA  L+K MK AG   +  T  ++L AC+   +++ G +           
Sbjct: 372 AGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQK----------- 420

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
                           L D MS  S  I+  V  +  +I  LA+ G+ +EA++L  +M  
Sbjct: 421 ----------------LLDCMSS-SYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMP- 462

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
             ++PN   +  +L  C   G  E G    K +        GR  Y  + ++   A K  
Sbjct: 463 --MEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGR--YILLSNIYAAAKKWD 518

Query: 426 EAVKL 430
           +A K+
Sbjct: 519 DARKV 523


>gi|302801035|ref|XP_002982274.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
 gi|300149866|gb|EFJ16519.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
          Length = 920

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/592 (36%), Positives = 342/592 (57%), Gaps = 13/592 (2%)

Query: 65  MQCHGVRADSVTYAELIK--CCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF 122
           MQ  G R + +T+   +K  C  +   + E+  +H  +   G E +  +   L+ M+   
Sbjct: 329 MQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGST 388

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
             ++ A+  FD +P +N+VSW  M++AY D     +A+EL   M R+ + PN  +Y AVL
Sbjct: 389 GAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVL 448

Query: 183 RACDSLIILRQLHCGIIKVG-FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
             C+ +   R +H  ++  G F  +  + + ++ ++A+ G L  A   F+    +D V W
Sbjct: 449 GCCEDVSEARSIHAEVVGNGLFAQESSIANGVVRMFARSGSLEEAVAAFDATVVKDSVSW 508

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV-- 299
           N+ +   +   D+  A+  +  M+  GF  D+ TL SV+  C  L  LELG  +   +  
Sbjct: 509 NTKVAALSAREDLHGAITAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSA 568

Query: 300 -LKYDHDLILNNALLDMYCKCGS-LEDAMSVFSRMI--QKDVISWSTMISGLAQNGYSQE 355
            ++ + D+++ +A+++M  KCGS +++   +F+RM   +KD+++W+TMI+  AQ+G+ ++
Sbjct: 569 AIEVERDVVVASAVMNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHGHGRK 628

Query: 356 ALKLFESMKV-SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR-EHYSC 413
           ALKLF  M+  S ++P+  T V VL  CSHAG VEDG + F   ++  GI+    EHY+C
Sbjct: 629 ALKLFRIMQQRSSVRPDSSTFVSVLSGCSHAGLVEDGIHCFFLAREVLGIEQQPVEHYAC 688

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           ++D+LGR G L+EA   I +MP   D+V W +LLGAC  + + +    AA+  + L   D
Sbjct: 689 LVDVLGRMGYLREAEDFIRKMPLPADSVVWTSLLGACSSYGDLEGGERAARAFIELYRSD 748

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE-PGCSWIEVNKQIHAFNVADSSHPQ 532
              Y++LSNIYA + +W++   VR+ M  R + K  PG S I V  ++H F   D SHPQ
Sbjct: 749 SVGYVVLSNIYAAAGRWEDSIRVREDMAERRVKKRVPGKSSIVVKNRVHEFFARDRSHPQ 808

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
            D I   L+ L   +   GY PDT  VL D+E EQKE  + YHSEKLAI FGL+S+    
Sbjct: 809 SDAIYAELERLKGLIREAGYVPDTRLVLHDVEEEQKEQLLWYHSEKLAIAFGLISVPHRH 868

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF-QDGNCSCGDYW 643
           +IR+ KNLR+C DCHT  K  A++  + I +RD  R+HHF +DG CSCGDYW
Sbjct: 869 SIRVIKNLRVCKDCHTATKFIARVTQREIAVRDCNRFHHFGKDGECSCGDYW 920



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 195/390 (50%), Gaps = 28/390 (7%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           ++ +A++VH+ +     E + F+   LL+ + K   +E A  +F ++   +++ W   I 
Sbjct: 150 SIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWNAAIM 209

Query: 149 AYC-DAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFE 204
           A   + +  D+AL L+  M  EG+ PN  ++ A+L +C    SL + R +H  + ++GF 
Sbjct: 210 ACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFL 269

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
            DV V +AL+ +Y + G +  +  VF  M  R+ V WN++I  FAQ      A  +Y RM
Sbjct: 270 GDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRM 329

Query: 265 KRAGFAADQSTLTSVLRACTGLALLELGTQVHVH----VLKYDHDLILNNALLDMYCKCG 320
           ++ GF  ++ T  + L+A    +  +LG    +H        + D+++  AL+ MY   G
Sbjct: 330 QQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTG 389

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380
           +++ A + F  +  K+++SW+ M++    NG ++EA++LF +MK   + PN ++ + VL 
Sbjct: 390 AIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLG 449

Query: 381 ACS--------HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
            C         HA  V +G    +S      I  G      ++ +  R+G L+EAV    
Sbjct: 450 CCEDVSEARSIHAEVVGNGLFAQES-----SIANG------VVRMFARSGSLEEAVAAF- 497

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICA 462
           +     D+V+W   + A     +   AI A
Sbjct: 498 DATVVKDSVSWNTKVAALSAREDLHGAITA 527



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 195/407 (47%), Gaps = 13/407 (3%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           RA+  +  M   G+  +  ++  ++  C    ++  A+ +H  V   GF  +  +   L+
Sbjct: 220 RALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALV 279

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
            M+ +   ++E+  +F+ M  RN VSW  MI+A+        A  +   M +EG RPN  
Sbjct: 280 TMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKI 339

Query: 177 TYSAVLR-ACDS----LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
           T+   L+ AC S    L     LH  I   G E DV V +AL+ +Y   G +  A   F+
Sbjct: 340 TFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFD 399

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
            +P +++V WN+++  +  N    EA+ L+  MKR   A ++ +  +VL  C  ++    
Sbjct: 400 AIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCEDVS---E 456

Query: 292 GTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
              +H  V+    +  +  + N ++ M+ + GSLE+A++ F   + KD +SW+T ++ L+
Sbjct: 457 ARSIHAEVVGNGLFAQESSIANGVVRMFARSGSLEEAVAAFDATVVKDSVSWNTKVAALS 516

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
                  A+  F +M+    +P+  T+V V+  C+  G +E G +  + +     ++   
Sbjct: 517 AREDLHGAITAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDV 576

Query: 409 EHYSCMIDLLGRAG-KLQEAVKLIHEMPYE-PDAVTWRALLGACKVH 453
              S +++++ + G  + E  +L   MP +  D V W  ++ A   H
Sbjct: 577 VVASAVMNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQH 623



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 115/427 (26%), Positives = 194/427 (45%), Gaps = 51/427 (11%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           T A L++ C+    + + + +H  ++  G      L N L+ M+ K   L++A   F  +
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA----------- 184
             R + +W T+I+A             +    R   RPN  T  AVL A           
Sbjct: 86  RSRGIATWNTLIAAQSSPAAVFDLYTRMKLEERAENRPNKLTIIAVLGAIASGDPSSSSS 145

Query: 185 --CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
               S+   R +H  I     E D+FV +AL+D Y K G + +A  VF+ +   DL+ WN
Sbjct: 146 SRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWN 205

Query: 243 SIIGGFAQNSD-VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV-- 299
           + I   A N +  D AL L +RM   G   ++++  ++L +C   + L L   +H  V  
Sbjct: 206 AAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEE 265

Query: 300 LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
           L +  D+++  AL+ MY +CGS++++++VF  M  ++ +SW+ MI+  AQ G+   A  +
Sbjct: 266 LGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAI 325

Query: 360 FESMKVSRIKPNYITIVGVL-FACSHA------GFVEDGWNHFKSMK----------KFY 402
           +  M+    +PN IT V  L  ACS +           GW     ++            Y
Sbjct: 326 YWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMY 385

Query: 403 G----IDPGREHY-----------SCMIDLLGRAGKLQEAVKLIHEMPYE---PDAVTWR 444
           G    ID  R  +           + M+   G  G+ +EA++L   M  +   P+ V++ 
Sbjct: 386 GSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYL 445

Query: 445 ALLGACK 451
           A+LG C+
Sbjct: 446 AVLGCCE 452



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 137/306 (44%), Gaps = 28/306 (9%)

Query: 177 TYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T + +LR C     L   RQLH  I+K G   +  + + L+ +Y+K   L +A   F+ +
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK---RAGFAADQSTLTSVLRACTG----- 285
            +R +  WN++I   A  S      +LY RMK   RA    ++ T+ +VL A        
Sbjct: 86  RSRGIATWNTLI---AAQSSPAAVFDLYTRMKLEERAENRPNKLTIIAVLGAIASGDPSS 142

Query: 286 -----LALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
                   +     VH  +   D   DL +  ALLD Y KCG +E A+ VFSR+   D+I
Sbjct: 143 SSSSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLI 202

Query: 339 SWSTMISGLAQNGYSQE-ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
            W+  I   A N    + AL L   M +  + PN  + V +L +C     +    +    
Sbjct: 203 CWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHAR 262

Query: 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA---CKVHR 454
           +++  G        + ++ + GR G + E++ +   M    + V+W A++ A   C  HR
Sbjct: 263 VEEL-GFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVR-NHVSWNAMIAAFAQCG-HR 319

Query: 455 NTDLAI 460
           +   AI
Sbjct: 320 SAAFAI 325


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/597 (38%), Positives = 347/597 (58%), Gaps = 11/597 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++   +M+ H +   S T    +  C +    +  + +H   L  G +    + N L+ 
Sbjct: 399 AVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMT 458

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN-DKALELLIFMLREGVRPNMF 176
           ++ +   L E + +F  MPE + VSW ++I A   ++ +  +A+   +   R G + N  
Sbjct: 459 LYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRI 518

Query: 177 TYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           T+S+VL A  SL    + +Q+H   +K     +    +ALI  Y K GE+   E +F+ M
Sbjct: 519 TFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRM 578

Query: 234 PTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
             R D V WNS+I G+  N  + +AL+L   M + G   D     +VL A   +A LE G
Sbjct: 579 AERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERG 638

Query: 293 TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
            +VH   ++   + D+++ +AL+DMY KCG L+ A+  F+ M  ++  SW++MISG A++
Sbjct: 639 MEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARH 698

Query: 351 GYSQEALKLFESMKV-SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           G  +EALKLFE+MK+  +  P+++T VGVL ACSHAG +E+G+ HF+SM   YG+ P  E
Sbjct: 699 GQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIE 758

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC--KVHRNTDLAICAAKKIL 467
           H+SCM D+LGRAG+L +    I +MP +P+ + WR +LGAC     R  +L   AA+ + 
Sbjct: 759 HFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLF 818

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
            L+P++   Y+LL N+YA   +W+++ + RK M+   + KE G SW+ +   +H F   D
Sbjct: 819 QLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGD 878

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
            SHP  D I K LK L +K+   GY P T + L DLE E KE+ + YHSEKLA+ F L +
Sbjct: 879 KSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAA 938

Query: 588 LTQGK-TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
                  IRI KNLR+CGDCH+  K  +K+E + I++RD  R+HHFQDG CSC D+W
Sbjct: 939 QRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 204/409 (49%), Gaps = 21/409 (5%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCC--LARHAVEEAKLVHNHVLSGGFEPETFLVNIL 115
           A+  +  M   G+ ++   +  +++ C  +    +   + +H  +    +  +  + N+L
Sbjct: 86  ALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVL 145

Query: 116 LNMHVK-FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           ++M+ K    +  A   F  +  +N VSW ++IS Y  A     A  +   M  +G RP 
Sbjct: 146 ISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPT 205

Query: 175 MFTYSAVLRACDSLI-----ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
            +T+ +++    SL      +L Q+ C I K G  +D+FV S L+  +AK G L  A  V
Sbjct: 206 EYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKV 265

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL- 288
           FN+M TR+ V  N ++ G  +    +EA  L+  M      + +S +  +L +    +L 
Sbjct: 266 FNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVI-LLSSFPEYSLA 324

Query: 289 ----LELGTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
               L+ G +VH HV+     D  + + N L++MY KCGS+ DA  VF  M  KD +SW+
Sbjct: 325 EEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWN 384

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKK 400
           +MI+GL QNG   EA++ ++SM+   I P   T++  L +C+   + + G   H +S+K 
Sbjct: 385 SMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLK- 443

Query: 401 FYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
             GID      + ++ L    G L E  K+   MP E D V+W +++GA
Sbjct: 444 -LGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP-EHDQVSWNSIIGA 490



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 217/450 (48%), Gaps = 57/450 (12%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139
            ++ C+       A+  H+ +     + + +L N L+N +++      A+ +FD+MP RN
Sbjct: 9   FVQSCVGHRGA--ARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRN 66

Query: 140 VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD-----SLIILRQL 194
            VSW  ++S Y     + +AL  L  M++EG+  N + + +VLRAC       ++  RQ+
Sbjct: 67  CVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQI 126

Query: 195 HCGIIKVGFESDVFVRSALIDIYAK-LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           H  + K+ +  D  V + LI +Y K +G +  A C F ++  ++ V WNSII  ++Q  D
Sbjct: 127 HGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGD 186

Query: 254 VDEALNLYKRMKRAGFAADQSTLTS-VLRACT----GLALLELGTQVHVHVLKYD--HDL 306
              A  ++  M+  G    + T  S V  AC+     + LLE   Q+   + K     DL
Sbjct: 187 QRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLE---QIMCTIQKSGLLTDL 243

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK-V 365
            + + L+  + K GSL  A  VF++M  ++ ++ + ++ GL +  + +EA KLF  M  +
Sbjct: 244 FVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSM 303

Query: 366 SRIKP-NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY------------- 411
             + P +Y+ ++        + F E       S+ +  G+  GRE +             
Sbjct: 304 IDVSPESYVILL--------SSFPE------YSLAEEVGLKKGREVHGHVITTGLVDFMV 349

Query: 412 ---SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
              + ++++  + G + +A ++ + M  + D+V+W +++            I A ++  +
Sbjct: 350 GIGNGLVNMYAKCGSIADARRVFYFMT-DKDSVSWNSMITGLD---QNGCFIEAVERYKS 405

Query: 469 LDPQD--PGTYILLSNIYA-NSQKWDEVAE 495
           +   D  PG++ L+S++ +  S KW ++ +
Sbjct: 406 MRRHDILPGSFTLISSLSSCASLKWAKLGQ 435



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 179/363 (49%), Gaps = 20/363 (5%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111
           +R LP A+      Q  G + + +T++ ++    +    E  K +H   L      E   
Sbjct: 495 ERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATT 554

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPE-RNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
            N L+  + K   ++  + +F +M E R+ V+W +MIS Y   ++  KAL+L+ FML+ G
Sbjct: 555 ENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTG 614

Query: 171 VRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
            R + F Y+ VL A  S+  L    ++H   ++   ESDV V SAL+D+Y+K G L  A 
Sbjct: 615 QRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYAL 674

Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG-FAADQSTLTSVLRACTGL 286
             FN MP R+   WNS+I G+A++   +EAL L++ MK  G    D  T   VL AC+  
Sbjct: 675 RFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHA 734

Query: 287 ALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWS 341
            LLE G + H   +   + L       + + D+  + G L+       +M ++ +V+ W 
Sbjct: 735 GLLEEGFK-HFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWR 793

Query: 342 TMISGLAQ-NGYSQEALKLFESMKVSRIKP----NYITIVGVLFACSHAGFVEDGWNHFK 396
           T++    + NG   E  K    M + +++P    NY+ ++G ++A    G  ED     K
Sbjct: 794 TVLGACCRANGRKAELGKKAAEM-LFQLEPENAVNYV-LLGNMYAA--GGRWEDLVKARK 849

Query: 397 SMK 399
            MK
Sbjct: 850 KMK 852


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/592 (36%), Positives = 343/592 (57%), Gaps = 7/592 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           +++    M   GVR DS T   ++        ++    +    L  GF    +++  L++
Sbjct: 193 SIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLIS 252

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           ++ K   +  A++LF ++   +++++  MIS +      + +++L   +L  G R +  T
Sbjct: 253 LYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSST 312

Query: 178 YSAVL---RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
              ++        L +   +H   +K G   +  V +A   IY KL E+  A  +F+E P
Sbjct: 313 IVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESP 372

Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
            + +V WN++I G+ QN   + A++L+K M +  F  +  T+T++L AC  L  L  G  
Sbjct: 373 EKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKW 432

Query: 295 VHVHVLKYDH---DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
           VH H++K ++   ++ ++ AL+DMY KCG++ +A  +F  M +K+ ++W+TMI G   +G
Sbjct: 433 VH-HLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHG 491

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
           Y  EALKL+  M      P+ +T + VL+ACSHAG V +G   F +M   Y I+P  EHY
Sbjct: 492 YGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHY 551

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +CM+D+LGR+G+L++A++ I +MP EP    W  LLGAC +H++TD+A  A++++  LDP
Sbjct: 552 ACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDP 611

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
              G Y+LLSNIY+  + + + A +R+ ++ R + K PGC+ IEVN   H F   D SH 
Sbjct: 612 GSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHS 671

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
               I   L+ L  K+  +GY  +T   L D+E E+KE ++  HSEKLAI FGL++   G
Sbjct: 672 HATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSEKLAIAFGLITTEPG 731

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             IRI KNLR+C DCHT  K  +K+  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 732 NEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 783



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/434 (28%), Positives = 215/434 (49%), Gaps = 17/434 (3%)

Query: 63  HAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF 122
           H  +   +  D+ TYA  +  C      +   L+H H +  G+    F+ + L++++ KF
Sbjct: 100 HLRRNTNLSPDNFTYAFAVAACSND---KHLMLLHAHSIIDGYGSNVFVGSALVDLYCKF 156

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
           S +  A+ +FD MPER+ V W TMI+        D +++L   M+ +GVR +  T +AVL
Sbjct: 157 SRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVL 216

Query: 183 RACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
            A   L  L+    + C  +K+GF    +V + LI +Y+K G++  A  +F  +   DL+
Sbjct: 217 PAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLI 276

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
            +N++I GF  N   + ++ L++ +  +G     ST+  ++   +    L L   +H   
Sbjct: 277 AYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFC 336

Query: 300 LKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           +K    +ILN     A   +Y K   ++ A  +F    +K V++W+ MISG  QNG ++ 
Sbjct: 337 VK--SGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTET 394

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCM 414
           A+ LF+ M  +   PN +TI  +L AC+  G +  G W H   + K   ++P     + +
Sbjct: 395 AISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVH--HLIKSENLEPNIYVSTAL 452

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474
           +D+  + G + EA +L   M  E + VTW  ++    +H     A+    ++L+L   +P
Sbjct: 453 VDMYAKCGNISEAWQLFDSMS-EKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLG-YNP 510

Query: 475 GTYILLSNIYANSQ 488
                LS +YA S 
Sbjct: 511 SAVTFLSVLYACSH 524



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 175/366 (47%), Gaps = 38/366 (10%)

Query: 122 FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNMFTYSA 180
           FS    A+ LF  +P+ ++  +  ++  +        ++ L   + R   + P+ FTY+ 
Sbjct: 57  FSATRHARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAF 116

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
            + AC +   L  LH   I  G+ S+VFV SAL+D+Y K   +  A  VF+ MP RD V+
Sbjct: 117 AVAACSNDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVL 176

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           WN++I G  +N   D+++ L++ M   G   D ST+T+VL A   L  L++G  +    L
Sbjct: 177 WNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLAL 236

Query: 301 KYDH---DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           K      D +L   L+ +Y KCG +  A  +F R+ + D+I+++ MISG   NG ++ ++
Sbjct: 237 KIGFGFCDYVL-TGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSV 295

Query: 358 KLFESMKVSRIKPNYITIVGVL----------FACSHAGF------------------VE 389
           KLF  +  S  + +  TIVG++           ACS  GF                  + 
Sbjct: 296 KLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIY 355

Query: 390 DGWNHFKSMKKFYGIDPGRE--HYSCMIDLLGRAGKLQEAVKLIHEM---PYEPDAVTWR 444
           +  N     +  +   P +    ++ MI    + G  + A+ L  EM    + P+AVT  
Sbjct: 356 NKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTIT 415

Query: 445 ALLGAC 450
            +L AC
Sbjct: 416 TILSAC 421



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 130/280 (46%), Gaps = 8/280 (2%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           L Q H   I  G+  D+   + L          R+A  +F  +P  D+ ++N ++ GF+ 
Sbjct: 28  LAQTHAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSL 87

Query: 251 NSDVDEALNLYKRMKR-AGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLI 307
           N     +++LY  ++R    + D  T    + AC+    L L   +H H +   Y  ++ 
Sbjct: 88  NDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLML---LHAHSIIDGYGSNVF 144

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + +AL+D+YCK   +  A  VF  M ++D + W+TMI+GL +N    ++++LF  M    
Sbjct: 145 VGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADG 204

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           ++ +  T+  VL A +    ++ G    + +    G        + +I L  + G +  A
Sbjct: 205 VRVDSSTVTAVLPAAAELQELKVGMG-IQCLALKIGFGFCDYVLTGLISLYSKCGDVNTA 263

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            +L+      PD + + A++     +  T+ ++   +++L
Sbjct: 264 -RLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELL 302


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/559 (41%), Positives = 327/559 (58%), Gaps = 31/559 (5%)

Query: 106 EPET-FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC-DAKMNDKALELL 163
           EP T FL   +L +   FS +  A  +FD +   +   W T+I A   D    ++A  L 
Sbjct: 60  EPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLY 119

Query: 164 IFMLREG-VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAK 219
             ML  G   P+  T+  VL+AC  +  L   +Q+HC I+K GF  DV+V + LI  Y  
Sbjct: 120 RKMLERGESAPDKHTFPFVLKACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGS 179

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
            G L  A  VF+EMP R LV WNS+I    +  + D AL L++ M+++ F  D  T+ SV
Sbjct: 180 CGCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYDSALQLFRDMQKS-FEPDGYTMQSV 238

Query: 280 LRACTGLALLELGTQVHVHVLK-----YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
           L AC GL  L LGT  HV +L+        D+++ N+L++MYCKCGSL  A  VF  M +
Sbjct: 239 LSACAGLGSLSLGTWSHVFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRK 298

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESM--KVSRIKPNYITIVGVLFACSHAGFVEDGW 392
            D+ SW+ MI G A +G ++EA+  F+ M  +   +KPN +T V +L AC+H G V  G 
Sbjct: 299 HDLASWNAMILGFATHGKAEEAMNCFDCMVKEGKNVKPNSVTFVALLIACNHRGMVNKGR 358

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC-K 451
            +F  M + YGI+P  EHY C+IDLL RAG + EA+ ++  MP +PDAV WR+LL AC K
Sbjct: 359 QYFDMMVREYGIEPALEHYGCIIDLLARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCK 418

Query: 452 VHRNTDLAICAAKKILNL--DPQDP-----GTYILLSNIYANSQKWDEVAEVRKTMRARG 504
              + +L+   A+ I+    D Q       G Y+LLS +YA++ +W++V  VRK M   G
Sbjct: 419 KGASVELSEEIARNIIGTMEDNQSSNSNCSGAYVLLSRVYASANRWNDVGIVRKLMSDHG 478

Query: 505 ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLE 564
           I KEPGCS IE+N   + F   D+SHPQ  +I + LK +  +L  +  A + +       
Sbjct: 479 IRKEPGCSSIEINGISNEFFAGDTSHPQTKQIYQQLKVIDDRLRSIVDATNDS------- 531

Query: 565 GEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIR 624
              KE S++ HSE+LAI FGL+SL     IRI KNLR+C DCH   KL +K+ N  I++R
Sbjct: 532 --SKEYSLRLHSERLAIAFGLISLPPQTPIRIFKNLRVCSDCHEVTKLISKVFNTEIIVR 589

Query: 625 DPIRYHHFQDGNCSCGDYW 643
           D +R+HHF+DG+CSC DYW
Sbjct: 590 DRVRFHHFKDGSCSCLDYW 608



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 170/339 (50%), Gaps = 18/339 (5%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSV----TYAELIKCCLARH 88
           ++I  +SS + +   R C   D+ R  +A    +    R +S     T+  ++K C    
Sbjct: 88  DSIENHSSFMWNTLIRAC-AHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIF 146

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
            + E K VH  ++  GF  + ++ N L++ +     L+ A+ +FD+MPER++VSW +MI 
Sbjct: 147 GLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMID 206

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIK---VG 202
           A       D AL+L   M ++   P+ +T  +VL AC    SL +    H  +++   V 
Sbjct: 207 ALVRVGEYDSALQLFRDM-QKSFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVD 265

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
              DV ++++LI++Y K G LR AE VF  M   DL  WN++I GFA +   +EA+N + 
Sbjct: 266 VAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMNCFD 325

Query: 263 RMKRAG--FAADQSTLTSVLRACTGLALLELGTQ-VHVHVLKYDHDLILNN--ALLDMYC 317
            M + G     +  T  ++L AC    ++  G Q   + V +Y  +  L +   ++D+  
Sbjct: 326 CMVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGIEPALEHYGCIIDLLA 385

Query: 318 KCGSLEDAMS-VFSRMIQKDVISWSTMISGLAQNGYSQE 355
           + G + +A+  V S  ++ D + W +++    + G S E
Sbjct: 386 RAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVE 424


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/632 (35%), Positives = 360/632 (56%), Gaps = 43/632 (6%)

Query: 14  PSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD 73
           P      +++++   +   N +  N+      F       D   A+K    M   G+  +
Sbjct: 36  PHFDGLPYAISVFETIQEPNLLIWNTM-----FRGHALSSDPVSALKLYVCMISLGLLPN 90

Query: 74  SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA----- 128
           S T+  L+K C    A +E + +H HVL  G + + ++   L++M+V+   LE+A     
Sbjct: 91  SYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFD 150

Query: 129 --------------------------QVLFDQMPERNVVSWTTMISAYCDAKMNDKALEL 162
                                     Q +FD++P ++VVSW  MIS Y +     +ALEL
Sbjct: 151 ESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALEL 210

Query: 163 LIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
              M++  VRP+  T   V+ AC    S+ + RQ+H  I   GF S++ + +ALID+Y+K
Sbjct: 211 FKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSK 270

Query: 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279
            GEL  A  +F  +P +D++ WN++IGG+   +   EAL L++ M R+G   +  T+ S+
Sbjct: 271 CGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 330

Query: 280 LRACTGLALLELGTQVHVHVLKYDHDLI----LNNALLDMYCKCGSLEDAMSVFSRMIQK 335
           L AC  L  +++G  +HV++ K    +     L  +L+DMY KCG +E A  VF+ ++ K
Sbjct: 331 LPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHK 390

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
            + SW+ MI G A +G +  +  +F  M+ + I+P+ IT VG+L ACSH+G ++ G + F
Sbjct: 391 SLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIF 450

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN 455
           +SM + Y + P  EHY CMIDLLG +G  +EA ++I+ M  EPD V W +LL ACK+H N
Sbjct: 451 RSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGN 510

Query: 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE 515
            +L    A+ ++ ++P++PG+Y+LLSNIYA + +W+EVA  R  +  +G+ K PGCS IE
Sbjct: 511 VELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIE 570

Query: 516 VNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYH 575
           ++  +H F + D  HP+  +I   L+ +   L   G+ PDT+ VLQ++E E KE ++++H
Sbjct: 571 IDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHH 630

Query: 576 SEKLAIVFGLMSLTQGKTIRIRKNLRICGDCH 607
           SEKLAI FGL+S   G  + I KNLR+C +CH
Sbjct: 631 SEKLAIAFGLISTKPGTKLTIVKNLRVCRNCH 662



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 220/434 (50%), Gaps = 43/434 (9%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHV---KFSLLEEAQVLFDQMPERNVVSWTTM 146
           ++  +++H  ++  G     + ++ L+   +    F  L  A  +F+ + E N++ W TM
Sbjct: 3   LQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTM 62

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGF 203
              +  +     AL+L + M+  G+ PN +T+  +L++C      +   Q+H  ++K+G 
Sbjct: 63  FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGC 122

Query: 204 ESDVFVRSALIDIYAKLGEL-------------------------------RNAECVFNE 232
           + D++V ++LI +Y + G L                                NA+ +F+E
Sbjct: 123 DLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDE 182

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           +P +D+V WN++I G+A+  +  EAL L+K M +     D+ST+ +V+ AC     +ELG
Sbjct: 183 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 242

Query: 293 TQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
            QVH  +    +  +L + NAL+D+Y KCG LE A  +F  +  KDVISW+T+I G    
Sbjct: 243 RQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHM 302

Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGRE 409
              +EAL LF+ M  S   PN +T++ +L AC+H G ++ G W H    K+  G+     
Sbjct: 303 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASS 362

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA--ICAAKKIL 467
             + +ID+  + G ++ A ++ + + ++  + +W A++    +H   D +  I +  +  
Sbjct: 363 LRTSLIDMYAKCGDIEAAHQVFNSILHKSLS-SWNAMIFGFAMHGRADASFDIFSRMRKN 421

Query: 468 NLDPQDPGTYILLS 481
            ++P D     LLS
Sbjct: 422 GIEPDDITFVGLLS 435


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/527 (39%), Positives = 328/527 (62%), Gaps = 6/527 (1%)

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
           S +  A+ LFD M E ++V + ++   Y  +    +   L + +L + + P+ +T+ ++L
Sbjct: 79  SSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLL 138

Query: 183 RACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
           +AC     L   RQLHC  +K+G + +V+V   LI++Y +  ++  A CVF+ +    +V
Sbjct: 139 KACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVV 198

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
            +N++I G+A+ +  +EAL+L++ M+      ++ TL SVL +C  L  L+LG  +H + 
Sbjct: 199 CYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYA 258

Query: 300 LKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
            K+     + +N AL+DM+ KCGSL+DA+S+F  M  KD  +WS MI   A +G ++ ++
Sbjct: 259 KKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSM 318

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
            +FE M+   ++P+ IT +G+L ACSH G VE+G  +F  M   +GI P  +HY  M+DL
Sbjct: 319 LMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDL 378

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           LGRAG L++A + I ++P  P  + WR LL AC  H N +LA   +++IL LD    G Y
Sbjct: 379 LGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHGGDY 438

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           ++LSN+YA ++KW+ V  +RK M+ R   K PGCS IEVN  +H F   D       K++
Sbjct: 439 VILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLH 498

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQ-DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRI 596
           + L  ++++L   GY PDT+ V+  D+  ++KE +++YHSEKLAI FGL++   G TIR+
Sbjct: 499 RALDEMVKELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTTIRV 558

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KNLR+C DCH+ AKL + +  + +V+RD  R+HHF+DG CSC D+W
Sbjct: 559 VKNLRVCRDCHSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 149/298 (50%), Gaps = 7/298 (2%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D+ T+  L+K C    A+EE + +H   +  G +   ++   L+NM+ +   ++ A+ +F
Sbjct: 130 DNYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVF 189

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLI 189
           D++ E  VV +  MI+ Y      ++AL L   M  + ++PN  T  +VL +C    SL 
Sbjct: 190 DRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLD 249

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           + + +H    K GF   V V +ALID++AK G L +A  +F  M  +D   W+++I  +A
Sbjct: 250 LGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYA 309

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH---VHVLKYDHDL 306
            +   + ++ +++RM+      D+ T   +L AC+   L+E G +     VH       +
Sbjct: 310 NHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSI 369

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESM 363
               +++D+  + G LEDA     ++ I    + W  +++  + +   + A K+ E +
Sbjct: 370 KHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERI 427



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/227 (18%), Positives = 104/227 (45%), Gaps = 22/227 (9%)

Query: 52  QRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           +R+ P  A+     MQ   ++ + +T   ++  C    +++  K +H +    GF     
Sbjct: 209 RRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVK 268

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           +   L++M  K   L++A  +F+ M  ++  +W+ MI AY +    + ++ +   M  E 
Sbjct: 269 VNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSEN 328

Query: 171 VRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFE------------SDVFVRSALIDIYA 218
           V+P+  T+  +L AC         H G+++ G E              +    +++D+  
Sbjct: 329 VQPDEITFLGLLNACS--------HTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLG 380

Query: 219 KLGELRNAECVFNEMP-TRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
           + G L +A    +++P +   ++W  ++   + +++++ A  + +R+
Sbjct: 381 RAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERI 427


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/554 (40%), Positives = 326/554 (58%), Gaps = 14/554 (2%)

Query: 102 SGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALE 161
           SG F  + +  + LL+M+       +A+  FD++P  N V  T M S      +    L 
Sbjct: 117 SGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCMRNNLVYTTLS 176

Query: 162 LLIFMLREGV------RPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALID 215
           +   M+  G          +   SA  R  D  I    +H  + K+G +    V + +ID
Sbjct: 177 IFRSMVASGSAGVVDEAAALVALSASARVPDRGIT-GGIHALVSKIGLDGQTGVANTIID 235

Query: 216 IYAKLG--ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG--FAA 271
            YAK G  +L  A  +F+ M  RD+V WN++I  +AQN    EAL LY +M   G     
Sbjct: 236 AYAKGGGHDLGAARKLFDMM-DRDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRC 294

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVF 329
           +  TL++VL AC     ++ G ++H  V++   + ++ +  +++DMY KCG +E A   F
Sbjct: 295 NAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAF 354

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
            ++  K+++SWS MI+G   +GY QEAL +F  M+ S +KPNYIT + VL ACSHAG + 
Sbjct: 355 QKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLS 414

Query: 390 DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           +G   + +MK  +GI+PG EHY CM+DLLGRAG L EA  LI EM  +PDA  W ALL A
Sbjct: 415 EGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSA 474

Query: 450 CKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEP 509
           C++++N +LA   A+++  LD  + G Y+LLSNIYA +  W EV  +R  ++ RGI K P
Sbjct: 475 CRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMRVLVKTRGIEKPP 534

Query: 510 GCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKE 569
           G S +E+  + H F V D SHPQ  +I  +L+ L++++   GY P+T  VL DL+ E++E
Sbjct: 535 GYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNTGSVLHDLDVEERE 594

Query: 570 DSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRY 629
             ++ HSEKLA+ F LM+  QG  I + KNLR+C DCH   K+  K+  + I+IRD  R+
Sbjct: 595 SMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTGREIIIRDLKRF 654

Query: 630 HHFQDGNCSCGDYW 643
           HHF+DG CSCGDYW
Sbjct: 655 HHFKDGLCSCGDYW 668



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 99/209 (47%), Gaps = 15/209 (7%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           VR ++VT + ++  C    A++  K +HN V+  G E   ++   +++M+ K   +E A 
Sbjct: 292 VRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAW 351

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
             F ++  +N++SW+ MI+ Y       +AL +   M + G++PN  T+  VL AC    
Sbjct: 352 KAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAG 411

Query: 190 ILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSI 244
           +L +     +    + G E  V     ++D+  + G L  A  +  EM  + D  +W ++
Sbjct: 412 LLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGAL 471

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           +           A  +YK ++ A   A++
Sbjct: 472 L----------SACRIYKNVELAKICAER 490


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/579 (37%), Positives = 345/579 (59%), Gaps = 6/579 (1%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           + D +T + +++ C     +  AK ++N++L  GF  E+ + NIL++++ K   +  A+ 
Sbjct: 304 KPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARD 363

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190
           +F+ M  ++ VSW ++IS Y  +    +A++L   M+    + +  TY  ++     L  
Sbjct: 364 VFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLAD 423

Query: 191 LR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L+    LH   IK G   D+ V +ALID+YAK GE+ ++  +F+ M T D V WN++I  
Sbjct: 424 LKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISA 483

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHD 305
             +  D    L +  +M+++    D +T    L  C  LA   LG ++H  +L+  Y+ +
Sbjct: 484 CVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESE 543

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           L + NAL++MY KCG LE++  VF RM ++DV++W+ MI      G  ++AL+ F  M+ 
Sbjct: 544 LQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEK 603

Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
           S I P+ +  + +++ACSH+G V++G   F+ MK  Y IDP  EHY+C++DLL R+ K+ 
Sbjct: 604 SGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKIS 663

Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
           +A + I  MP +PDA  W ++L AC+   + + A   +++I+ L+P DPG  IL SN YA
Sbjct: 664 KAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYA 723

Query: 486 NSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQ 545
             +KWD+V+ +RK+++ + ITK PG SWIEV K +H F+  D S PQ + I K L+ L  
Sbjct: 724 ALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYS 783

Query: 546 KLVGVGYAPDTNYVLQDL-EGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICG 604
            +   GY PD   V Q+L E E+K   I  HSE+LAI FGL++   G  +++ KNLR+CG
Sbjct: 784 LMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCG 843

Query: 605 DCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           DCH   KL +K+  + I++RD  R+H F+DG CSC D W
Sbjct: 844 DCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/402 (31%), Positives = 217/402 (53%), Gaps = 10/402 (2%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
            P A++    ++   V  D  T+  +IK C      E   LV+  +L  GFE + F+ N 
Sbjct: 87  FPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNA 146

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           L++M+ +  LL  A+ +FD+MP R++VSW ++IS Y      ++ALE+   +    + P+
Sbjct: 147 LVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPD 206

Query: 175 MFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
            FT S+VL A  +L++++Q   LH   +K G  S V V + L+ +Y K     +A  VF+
Sbjct: 207 SFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFD 266

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           EM  RD V +N++I G+ +   V+E++ ++       F  D  T++SVLRAC  L  L L
Sbjct: 267 EMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFKPDLLTVSSVLRACGHLRDLSL 325

Query: 292 GTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
              ++ ++LK    L   + N L+D+Y KCG +  A  VF+ M  KD +SW+++ISG  Q
Sbjct: 326 AKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQ 385

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGR 408
           +G   EA+KLF+ M +   + ++IT + ++   +    ++ G   H   +K    ID   
Sbjct: 386 SGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSV 445

Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
            +   +ID+  + G++ +++K+   M    D VTW  ++ AC
Sbjct: 446 SN--ALIDMYAKCGEVGDSLKIFSSMG-TGDTVTWNTVISAC 484



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 210/401 (52%), Gaps = 10/401 (2%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM-PERNVVSWTTMIS 148
           + E + +H  V+S G +   F    L++ +  F     +  +F ++ P +NV  W ++I 
Sbjct: 20  LNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIR 79

Query: 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFES 205
           A+    +  +ALE    +    V P+ +T+ +V++AC  L        ++  I+ +GFES
Sbjct: 80  AFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFES 139

Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
           D+FV +AL+D+Y+++G L  A  VF+EMP RDLV WNS+I G++ +   +EAL +Y  +K
Sbjct: 140 DLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELK 199

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLE 323
            +    D  T++SVL A   L +++ G  +H   LK   +  +++NN L+ MY K     
Sbjct: 200 NSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPT 259

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383
           DA  VF  M  +D +S++TMI G  +    +E++++F    + + KP+ +T+  VL AC 
Sbjct: 260 DARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFKPDLLTVSSVLRACG 318

Query: 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443
           H   +      +  M K  G        + +ID+  + G +  A  + + M  + D V+W
Sbjct: 319 HLRDLSLAKYIYNYMLK-AGFVLESTVRNILIDVYAKCGDMITARDVFNSMECK-DTVSW 376

Query: 444 RALLGACKVHRNTDLAICAAKKILNLDPQ-DPGTYILLSNI 483
            +++       +   A+   K ++ ++ Q D  TY++L ++
Sbjct: 377 NSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISV 417



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 126/216 (58%), Gaps = 3/216 (1%)

Query: 179 SAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM-PTRD 237
           S  L +  +L  LR++H  +I +G +S  F    LID Y+   E  ++  VF  + P ++
Sbjct: 11  SRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKN 70

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           + +WNSII  F++N    EAL  Y +++ +  + D+ T  SV++AC GL   E+G  V+ 
Sbjct: 71  VYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYE 130

Query: 298 HVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
            +L   ++ DL + NAL+DMY + G L  A  VF  M  +D++SW+++ISG + +GY +E
Sbjct: 131 QILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEE 190

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           AL+++  +K S I P+  T+  VL A  +   V+ G
Sbjct: 191 ALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQG 226



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 157/326 (48%), Gaps = 11/326 (3%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           DL  AMK    M     +AD +TY  LI        ++  K +H++ +  G   +  + N
Sbjct: 388 DLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSN 447

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            L++M+ K   + ++  +F  M   + V+W T+ISA          L++   M +  V P
Sbjct: 448 ALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVP 507

Query: 174 NMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +M T+   L  C SL   R   ++HC +++ G+ES++ + +ALI++Y+K G L N+  VF
Sbjct: 508 DMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVF 567

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
             M  RD+V W  +I  +    + ++AL  +  M+++G   D     +++ AC+   L++
Sbjct: 568 ERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVD 627

Query: 291 LG----TQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMIS 345
            G     ++  H  K D  +     ++D+  +   +  A      M I+ D   W++++ 
Sbjct: 628 EGLACFEKMKTH-YKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLR 686

Query: 346 GLAQNGYSQEALKLFESMKVSRIKPN 371
               +G  + A ++  S ++  + P+
Sbjct: 687 ACRTSGDMETAERV--SRRIIELNPD 710



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 120/248 (48%), Gaps = 10/248 (4%)

Query: 22  SLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELI 81
           SL I   + + +T+T N+  ++    RF    D    ++    M+   V  D  T+   +
Sbjct: 462 SLKIFSSMGTGDTVTWNT--VISACVRFG---DFATGLQVTTQMRKSEVVPDMATFLVTL 516

Query: 82  KCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVV 141
             C +  A    K +H  +L  G+E E  + N L+ M+ K   LE +  +F++M  R+VV
Sbjct: 517 PMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVV 576

Query: 142 SWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD-SLIILRQLHC-GII 199
           +WT MI AY      +KALE    M + G+ P+   + A++ AC  S ++   L C   +
Sbjct: 577 TWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKM 636

Query: 200 KVGFESDVFVR--SALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDE 256
           K  ++ D  +   + ++D+ ++  ++  AE     MP + D  +W S++     + D++ 
Sbjct: 637 KTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMET 696

Query: 257 ALNLYKRM 264
           A  + +R+
Sbjct: 697 AERVSRRI 704


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/593 (36%), Positives = 327/593 (55%), Gaps = 39/593 (6%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLE---EAQVLFDQMPERNVVSWTTM 146
           +  AK +H H+        ++++  LL        +       +LF Q+   N   ++ +
Sbjct: 24  LNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLYSAL 83

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESD 206
           I AY        ++ L   ML   V P  FT+SA+     +  +  QLH      GF +D
Sbjct: 84  IRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPSLGSQLHLHAFLFGFVND 143

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRD----------------------------- 237
           ++V + +I +Y K G L  A  VF+EMP RD                             
Sbjct: 144 LYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPV 203

Query: 238 --LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
             +V W S++ G++QN+   +AL  +++M+ AG   D+ TL   + AC  L +      +
Sbjct: 204 KDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWI 263

Query: 296 ----HVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
                        ++ + +AL+DMY KCG++E+A +VF  M + +V S+S+MI G A +G
Sbjct: 264 REIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHG 323

Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411
            ++ A+KLF  M  + IKPN++T VG+  ACSHAG VE G   F +MK+ YG+ P  +HY
Sbjct: 324 RARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHY 383

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
           +CM DLLGRAG L++A++L+  MP EP+   W ALLGA  +H N D+A  A++ +  L+P
Sbjct: 384 ACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASRSLFELEP 443

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEV-NKQIHAFNVADSSH 530
            + G Y+LLS  YA + KWD+V+ VRK MR + + K PGCSW+E  N  IH F   D  H
Sbjct: 444 DNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHEFFAGDVKH 503

Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
           P+I++I K L  L+Q+L   GY P  N V  D++ E K   +  HSEKLA+ +GL+S   
Sbjct: 504 PEINEIKKALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLVSHSEKLALAYGLLSTDA 563

Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           G TI+I KNLRIC DCH      +K+  + I++RD +R+HHF +G CSC ++W
Sbjct: 564 GSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNGACSCNNFW 616


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/554 (39%), Positives = 316/554 (57%), Gaps = 39/554 (7%)

Query: 93  AKLVHNHVLSGGFEP-ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
           A  +H   L  GF   + F+   L+  + K    + A+  FD+ P R+V     M++AY 
Sbjct: 58  AASLHARALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYV 117

Query: 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRS 211
                 +A  +      +G+R                               E D+   +
Sbjct: 118 TRGEVAEARRVF-----DGMR-------------------------------ERDMVSWN 141

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
            +I  YA  GE+  A  VFN M  RD   W+S++  + +     +AL L++ M+ A    
Sbjct: 142 TMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNP 201

Query: 272 DQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVF 329
           D +T+ SVL AC+ +  L +G +VH  V     + D+ L  AL+DMY KCG +E+++ VF
Sbjct: 202 DCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVF 261

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
             M  KDV++WS+MI GLA +G+  +AL LF  M    ++PN +T +GVL +C+H G V 
Sbjct: 262 HSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVS 321

Query: 390 DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           DG  +F SM   +G+ P  +HY CM+DLLGR+G ++EA +LI +MP+EPDAV WRALLGA
Sbjct: 322 DGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGA 381

Query: 450 CKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEP 509
           C++++N ++A  A  K+  LDP   G Y+LLSNIYA +  W+ VAE+R+T+R   I + P
Sbjct: 382 CRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIP 441

Query: 510 GCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKE 569
           G S IE    IH F   D SHP+  +I K L  ++ +L   GY P T  VLQD++ + KE
Sbjct: 442 GRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGYKPMTGLVLQDIDEQSKE 501

Query: 570 DSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRY 629
            ++  HSEKLA+ FGL++   G T+RI KNLR C DCH+  KL A +  + ++IRD  R+
Sbjct: 502 RALAEHSEKLAVAFGLLTTPAGSTLRITKNLRACEDCHSAIKLIALLYERKLIIRDRNRF 561

Query: 630 HHFQDGNCSCGDYW 643
           HHF +G CSC DYW
Sbjct: 562 HHFSEGRCSCKDYW 575



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 153/333 (45%), Gaps = 58/333 (17%)

Query: 57  RAMKAMHAMQCHGVRADSV-TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNIL 115
           RA+K+  A     VR   V  YA+  +  LAR A +EA              + FL N++
Sbjct: 64  RALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAP-----------RRDVFLCNVM 112

Query: 116 LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMI---------------------------- 147
           L  +V    + EA+ +FD M ER++VSW TMI                            
Sbjct: 113 LAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWS 172

Query: 148 ---SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLHCGIIKV 201
              SAY   + +  ALEL   M    V P+  T  +VL AC    +L +  ++H  +   
Sbjct: 173 SMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESN 232

Query: 202 GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLY 261
           G E DV + +ALID+YAK G++ N+  VF+ MP +D++ W+S+I G A +    +AL+L+
Sbjct: 233 GVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLF 292

Query: 262 KRMKRAGFAADQSTLTSVLRACTGLALLELGTQ-------VHVHVLKYDHDLILNNALLD 314
            RM   G   ++ T   VL +CT L L+  G +       VH    K  H       ++D
Sbjct: 293 SRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQH----YGCMVD 348

Query: 315 MYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
           +  + G +E+A  +   M  + D + W  ++  
Sbjct: 349 LLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGA 381



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 24/221 (10%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           SS++  +T+    +D   A++    M+   V  D  T   ++  C    A+     VH  
Sbjct: 172 SSMMSAYTKGRRSKD---ALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQF 228

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           V S G E +  L   L++M+ K   +E +  +F  MP ++V++W++MI    +      A
Sbjct: 229 VESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDA 288

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVG---FESDVFVRSA---- 212
           L L   ML EG++PN  T+  VL +C         H G++  G   F S   V       
Sbjct: 289 LSLFSRMLSEGLQPNEVTFIGVLISCT--------HLGLVSDGKKYFSSMSVVHGVTPKV 340

Query: 213 -----LIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGG 247
                ++D+  + G +  A+ +  +MP   D V+W +++G 
Sbjct: 341 QHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGA 381


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/667 (34%), Positives = 357/667 (53%), Gaps = 55/667 (8%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCH-GVRADSVTYAE 79
           FS   +PP           S + + F R   +   PRA    +    H G R D  ++  
Sbjct: 67  FSSIPSPP----------ESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLP 116

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139
           ++K      A+ E   +H          + F+    ++M+     +  A+ +FD+M  R+
Sbjct: 117 ILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRD 176

Query: 140 VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGII 199
           VV+W TMI  YC   + D+A +L   M    V P+      ++ AC     +R  +  I 
Sbjct: 177 VVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMR-YNRAIY 235

Query: 200 KVGFESDV-----------------------------------FVRSALIDIYAKLGELR 224
           +   E+DV                                   FV +A++  Y+K G L 
Sbjct: 236 EFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLD 295

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
           +A+ +F++   +DLV W ++I  + ++    EAL +++ M  +G   D  ++ SV+ AC 
Sbjct: 296 DAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACA 355

Query: 285 GLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            L +L+    VH  +HV   + +L +NNAL++MY KCG L+    VF +M +++V+SWS+
Sbjct: 356 NLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSS 415

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           MI+ L+ +G + +AL LF  MK   ++PN +T VGVL+ CSH+G VE+G   F SM   Y
Sbjct: 416 MINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEY 475

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            I P  EHY CM+DL GRA  L+EA+++I  MP   + V W +L+ AC++H   +L   A
Sbjct: 476 NITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFA 535

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           AK+IL L+P   G  +L+SNIYA  Q+W++V  +R+ M  + + KE G S I+ N + H 
Sbjct: 536 AKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHE 595

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F + D  H Q ++I   L  ++ KL   GY PD   VL D+E E+K+D + +HSEKLA+ 
Sbjct: 596 FLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALC 655

Query: 583 FGLMSLTQGK------TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGN 636
           FGLM+  + +       IRI KNLR+C DCH F KL +K+  + I++RD  R+H +++G 
Sbjct: 656 FGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGL 715

Query: 637 CSCGDYW 643
           CSC DYW
Sbjct: 716 CSCRDYW 722



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 103/208 (49%), Gaps = 3/208 (1%)

Query: 182 LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVV 240
           L  C SL  ++QLH  I++      +      + + +    L  A  VF+ +P+  + +V
Sbjct: 19  LSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSVSSSSINLSYALNVFSSIPSPPESIV 78

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           +N  +   +++S+    +  Y+R++  G   DQ +   +L+A + ++ L  G ++H    
Sbjct: 79  FNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAF 138

Query: 301 KYDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K     D  +    +DMY  CG +  A +VF  M  +DV++W+TMI    + G   EA K
Sbjct: 139 KIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFK 198

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAG 386
           LFE MK S + P+ + +  ++ AC   G
Sbjct: 199 LFEEMKDSNVMPDEMILCNIVSACGRTG 226


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/598 (38%), Positives = 341/598 (57%), Gaps = 14/598 (2%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEE-AKLVHNHVLSGGFEPE-TFLVNI 114
           +A+ A  AM   G+R +  T+    K   +          +H   L  G+ P+  F+   
Sbjct: 102 QALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRSAAGTQLHALALRFGYLPDDAFVSCA 161

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL--IFMLR-EGV 171
            L+M+ K   L  A+ LFD+MP RNVV+W  +++   +A ++ + LE +   F LR  G 
Sbjct: 162 ALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMT---NAVLDGRPLETVEAYFGLRGAGG 218

Query: 172 RPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
            PN+ +  A   AC  +  L    Q +  + K GF  DV V ++++D Y K   +  A  
Sbjct: 219 MPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARA 278

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           VF+ M  R+ V W S++  +AQN   +EA  +Y   +RAG       ++SVL  C GL  
Sbjct: 279 VFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLG 338

Query: 289 LELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           L+LG  +H   ++   D ++ + +AL+DMY KCG +EDA  VF  M Q+++++W+ MI G
Sbjct: 339 LDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGG 398

Query: 347 LAQNGYSQEALKLFESMKVSR-IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
            A  G +  AL +F+ M + +   PNYIT+V VL ACS  G  ++G+  F++MK  +GI+
Sbjct: 399 YAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIE 458

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465
           P  EHY+C++DLL RAG  + A K+I  MP  P    W ALLG CK+H  T+L   AA+K
Sbjct: 459 PRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMHGKTELGRIAAEK 518

Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNV 525
           +  LDPQD G ++LLSN+ A++ +W E  +VRK M+  GI K+PG SWI     +H F  
Sbjct: 519 LFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKDPGRSWITWKNVVHVFQA 578

Query: 526 ADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGL 585
            D++H    +I   L  L  ++   GY PDT Y L DLE E+KE  +  HSEKLA+ FGL
Sbjct: 579 KDTTHDMNREIQALLAKLKGQMQAAGYMPDTQYALYDLEEEEKESEVFQHSEKLALAFGL 638

Query: 586 MSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           + +  G  IRI KNLRIC DCH   K  + +  + I++RD   +HHF++  CSC DYW
Sbjct: 639 ICIPPGIPIRIMKNLRICVDCHRAFKFISGIAGREIIVRDNNMFHHFKNYECSCKDYW 696



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 206/445 (46%), Gaps = 20/445 (4%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNH---VLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           D+   A  ++  +A  +    +  H     +LS    P  FL   L+N++ K  L   A 
Sbjct: 16  DAQLLAGAVEAAIATRSARLGRAAHARALRLLSPALPP--FLCAHLVNLYSKLDLPGAAA 73

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
                 P   VVS+T  IS         +AL     MLR G+RPN FT+ +  +A  S  
Sbjct: 74  ASLAADPSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAP 133

Query: 190 ILR----QLHCGIIKVGF-ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
                  QLH   ++ G+   D FV  A +D+Y K G L  A  +F+EMP R++V WN++
Sbjct: 134 PRSAAGTQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAV 193

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--Y 302
           +     +    E +  Y  ++ AG   +  ++ +   AC G+  L LG Q +  V K  +
Sbjct: 194 MTNAVLDGRPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGF 253

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
             D+ ++N+++D Y KC  +  A +VF  M  ++ +SW +M+   AQNG  +EA  ++  
Sbjct: 254 GKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLG 313

Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVE-DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
            + +  +P    +  VL  C  AG +  D      ++     ID      S ++D+ G+ 
Sbjct: 314 ARRAGEEPTDFMVSSVLTTC--AGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKC 371

Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
           G +++A ++  EMP + + VTW A++G      +   A+    K++      P  YI L 
Sbjct: 372 GGIEDAEQVFFEMP-QRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAP-NYITLV 429

Query: 482 NIYANSQKWD---EVAEVRKTMRAR 503
           N+     +     E  E+ +TM+ R
Sbjct: 430 NVLTACSRGGLTKEGYELFQTMKWR 454


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/480 (41%), Positives = 302/480 (62%), Gaps = 11/480 (2%)

Query: 173 PNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P    Y+++L++C    ++   +QLH  +   GF  D  + + L+++Y     L +A  +
Sbjct: 73  PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F+ +P  ++ +WN +I G+A N   + A+ LY +M   G   D  T   VL+AC  L+ +
Sbjct: 133 FDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAI 192

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD---VISWSTMI 344
           E G ++H HV++  ++ D+ +  AL+DMY KCG +  A  VF +++ +D   V+SW+ MI
Sbjct: 193 EHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMI 252

Query: 345 SGLAQNGYSQEALKLFESMKVSRI-KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           +G A +G++ EAL LFE M  +R+ KP++IT VGVL ACSH G +E+GW  F++M + Y 
Sbjct: 253 TGYAMHGHATEALDLFEEM--NRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYK 310

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           IDP  +HY+CM+DLLG +G+L EA  LI +M   PD+  W ALL +CK+H N +L   A 
Sbjct: 311 IDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIAL 370

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
           ++++ L+P D G Y++LSNIYA + KW+ VA++RK M  R + K   CSWIEV  ++HAF
Sbjct: 371 ERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAF 430

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
              D+SHP  D+I   L+ +   +   GY+P T  V  D+E ++K + +  HSE+LAI F
Sbjct: 431 LSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAF 490

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GL+S   G  + I KNLRIC DCH   K  +K+  + I +RD  RYHHF+DG CSCGDYW
Sbjct: 491 GLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 550



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 89/279 (31%), Positives = 153/279 (54%), Gaps = 11/279 (3%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           YA L++ C+AR A++  K +H  V   GF  +T +   L+N++     L  A++LFD++P
Sbjct: 78  YASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIP 137

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQ 193
           + N+  W  +I  Y      + A++L   M   G+ P+ FT+  VL+AC +L  +   R+
Sbjct: 138 KHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGRE 197

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV---WNSIIGGFAQ 250
           +H  +++ G+E DVFV +ALID+YAK G + +A  VF+++  RD V+   WN++I G+A 
Sbjct: 198 IHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAM 257

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG---TQVHVHVLKYDHDLI 307
           +    EAL+L++ M R     D  T   VL AC+   LLE G    +  +   K D  + 
Sbjct: 258 HGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQ 316

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMIS 345
               ++D+    G L++A ++  +M +  D   W  +++
Sbjct: 317 HYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLN 355



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 125/271 (46%), Gaps = 37/271 (13%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++  + M  +G+  D+ T+  ++K C A  A+E  + +H HV+  G+E + F+   L++
Sbjct: 160 AVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALID 219

Query: 118 MHVKFSLLEEAQVLFDQMPERN---VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           M+ K   +  A+ +FD++  R+   VVSW  MI+ Y       +AL+L   M R   +P+
Sbjct: 220 MYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPD 278

Query: 175 MFTYSAVLRACDSLIILRQLHCGIIKVGFE-SDVFVRSALIDIYAKLGELRNAECVFNEM 233
             T+  VL AC         H G+++ G+   +  +R   ID                  
Sbjct: 279 HITFVGVLSACS--------HGGLLEEGWMFFETMIRDYKID------------------ 312

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
           PT  +  +  ++     +  +DEA NL  +MK      D     ++L +C   A +ELG 
Sbjct: 313 PT--VQHYTCMVDLLGHSGRLDEAYNLIMQMK---VLPDSGVWGALLNSCKIHANVELGE 367

Query: 294 QVHVHVLKYDHDLILNNALL-DMYCKCGSLE 323
                +++ + D   N  +L ++Y + G  E
Sbjct: 368 IALERLIELEPDDAGNYVILSNIYAQAGKWE 398


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/586 (38%), Positives = 342/586 (58%), Gaps = 20/586 (3%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE----------TFLVNI 114
           MQ H +R ++ T   L+     + A+ +   VH + +     P             L   
Sbjct: 104 MQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTA 163

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV--- 171
           LL+M+ K   L  A+ +FD MP RN V+W+ +I  +       +A  L   ML +G+   
Sbjct: 164 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL 223

Query: 172 RPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
            P   + ++ LRAC SL  LR   QLH  + K G  +D+   ++L+ +YAK G +  A  
Sbjct: 224 SPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIA 281

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           +F+EM  +D V +++++ G+ QN   +EA  ++K+M+      D +T+ S++ AC+ LA 
Sbjct: 282 LFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAA 341

Query: 289 LELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           L+ G   H  V+      +  + NAL+DMY KCG ++ +  VF+ M  +D++SW+TMI+G
Sbjct: 342 LQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAG 401

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
              +G  +EA  LF  M      P+ +T + +L ACSH+G V +G + F  M   YG+ P
Sbjct: 402 YGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTP 461

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
             EHY CM+DLL R G L EA + I  MP   D   W ALLGAC+V++N DL    ++ I
Sbjct: 462 RMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMI 521

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
             L P+  G ++LLSNIY+ + ++DE AEVR   + +G  K PGCSWIE+N  +HAF   
Sbjct: 522 QELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGG 581

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D SHPQ  +I + L +++  +  +GY PDT++VLQDLE E+KE ++  HSEKLAI +G++
Sbjct: 582 DQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGIL 641

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF 632
           SL++ KTI + KNLR+CGDCHT  K  + ++ + I++RD  R+HHF
Sbjct: 642 SLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/432 (29%), Positives = 217/432 (50%), Gaps = 21/432 (4%)

Query: 68  HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           H V  ++ T+   +K C A       + +H H +  G + + F+   LL+M+VK + L +
Sbjct: 4   HRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPD 63

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE--GVRPNMFTYSAVLRAC 185
           A  +F  MP R++V+W  M++ Y    M   A+  L+ M  +   +RPN  T  A+L   
Sbjct: 64  AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLL 123

Query: 186 DSLIILRQ---LHCGIIKVGFESD----------VFVRSALIDIYAKLGELRNAECVFNE 232
                L Q   +H   I+     +          V + +AL+D+YAK G L  A  VF+ 
Sbjct: 124 AQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 183

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLRACTGLALLEL 291
           MP R+ V W+++IGGF   S + +A  L+K M   G      +++ S LRAC  L  L +
Sbjct: 184 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRM 243

Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G Q+H  + K     DL   N+LL MY K G ++ A+++F  M  KD +S+S ++SG  Q
Sbjct: 244 GEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQ 303

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           NG ++EA  +F+ M+   ++P+  T+V ++ ACSH   ++ G     S+    G+     
Sbjct: 304 NGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSV-IIRGLASETS 362

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
             + +ID+  + G++  + ++ + MP   D V+W  ++    +H     A     ++ NL
Sbjct: 363 ICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHGLGKEATALFLEMNNL 421

Query: 470 D-PQDPGTYILL 480
             P D  T+I L
Sbjct: 422 GFPPDGVTFICL 433



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 192/433 (44%), Gaps = 50/433 (11%)

Query: 166 MLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           MLR  V PN +T+   L+AC +L      R +H   I  G ++D+FV +AL+D+Y K   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN--LYKRMKRAGFAADQSTLTSVL 280
           L +A  +F  MP RDLV WN+++ G+A +     A+   L  +M+      + STL ++L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 281 RACTGLALLELGTQVHVHVL------------KYDHDLILNNALLDMYCKCGSLEDAMSV 328
                   L  GT VH + +            K    ++L  ALLDMY KCGSL  A  V
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM---KVSRIKPNYITIVGVLFACSHA 385
           F  M  ++ ++WS +I G        +A  LF++M    +  + P   +I   L AC+  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASL 238

Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
             +  G     ++    G+       + ++ +  +AG + +A+ L  EM  + D V++ A
Sbjct: 239 DHLRMG-EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSA 296

Query: 446 LLGACKVHRNTDLAICAAKKI--LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503
           L+     +   + A    KK+   N++P D  T + L    ++            ++  R
Sbjct: 297 LVSGYVQNGRAEEAFLVFKKMQACNVEP-DAATMVSLIPACSHLAALQHGRCSHGSVIIR 355

Query: 504 GITKEPG-----------CSWIEVNKQIHAFNVADS----------SHPQIDKINKHLKH 542
           G+  E             C  I++++Q+  FN+  S          +   I  + K    
Sbjct: 356 GLASETSICNALIDMYAKCGRIDLSRQV--FNMMPSRDIVSWNTMIAGYGIHGLGKEATA 413

Query: 543 LIQKLVGVGYAPD 555
           L  ++  +G+ PD
Sbjct: 414 LFLEMNNLGFPPD 426


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/617 (37%), Positives = 354/617 (57%), Gaps = 54/617 (8%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQ 134
           +  L + C A   VE+   +H   L        F+ + LL ++   K + L  A+ +FD+
Sbjct: 19  HLSLFQTCSAPQEVEQ---LHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDR 75

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL--- 191
           +  R+++ W T+I  Y + + +   + L   ++ E + P+ FT   V++ C  L ++   
Sbjct: 76  IQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEG 134

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII------ 245
           +Q+H   +K+GF SDVFV+ +L+++Y+K GE+  A  VF+ M  +D+V+WNS+I      
Sbjct: 135 KQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVS 194

Query: 246 -----GGFAQNSDVDEALNLYKRMK-------------------------------RAGF 269
                 G+ ++ D D AL L+ +M                                + G 
Sbjct: 195 WNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGS 254

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMS 327
               +TL SVL A +GLA+L  G  +H ++ K  ++ D IL  +L++MY KCG +E A++
Sbjct: 255 RPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALT 314

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           VF  + +K V  W+ +I GL  +G +  AL LF  M  + +KPN I  +GVL AC+HAG 
Sbjct: 315 VFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGL 374

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           V+DG  +F  M   Y I+P  EHY C++D+L RAG L+EA   I  MP  P+ V W +LL
Sbjct: 375 VDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLL 434

Query: 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507
           G  + H   D+   AA++++ + P+  G YILLSN+YA S  W++V+ VR+ M  RG  K
Sbjct: 435 GGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRK 494

Query: 508 EPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE- 566
           +PGCS +E    +H F V D SHPQ  +I   +  + +KL  VG+ PDT  VL  +EGE 
Sbjct: 495 DPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEK 554

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
           +KE  ++ HSE+LAI FGL+++  G  IRI KNLR+C DCH+  KL +K+ ++ I++RD 
Sbjct: 555 EKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDN 614

Query: 627 IRYHHFQDGNCSCGDYW 643
            R+HHF++G+CSC DYW
Sbjct: 615 CRFHHFKNGSCSCMDYW 631



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 171/391 (43%), Gaps = 53/391 (13%)

Query: 68  HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           H    D+ T   +IK C     V+E K +H   L  GF  + F+   L+NM+ K   ++ 
Sbjct: 109 HEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDC 168

Query: 128 AQVLFDQMPERNVVSWTT-----------MISAYCDAKMNDKALEL-------------- 162
           A+ +FD M +++VV W +           MI+ Y  +   D ALEL              
Sbjct: 169 ARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNL 228

Query: 163 -----------------LIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVG 202
                               ML+ G RP+  T  +VL A   L +L   R +H  + K G
Sbjct: 229 MIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNG 288

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
           FE D  + ++LI++YAK G + +A  VF  +  + +  W +II G   +   + AL L+ 
Sbjct: 289 FELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFL 348

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQ---VHVHVLKYDHDLILNNALLDMYCKC 319
            M + G   +      VL AC    L++ G Q   + ++  K +  L     L+D+ C+ 
Sbjct: 349 EMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRA 408

Query: 320 GSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
           G LE+A +    M I  + + W +++ G   +G  +  +  + + +V  + P  I    +
Sbjct: 409 GHLEEAKNTIENMPISPNKVIWMSLLGGSRNHG--KIDIGEYAAQRVIEVAPETIGCYIL 466

Query: 379 LFACSHAGFVEDGWNHFKSM--KKFYGIDPG 407
           L     A  + +  +H + M  K+ +  DPG
Sbjct: 467 LSNMYAASGMWEKVSHVREMMYKRGFRKDPG 497



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 21/211 (9%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+K    M   G R    T   ++        + + + +H+++   GFE +  L   L+ 
Sbjct: 242 AVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIE 301

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +E A  +F  + ++ V  WT +I       M + AL L + M + G++PN   
Sbjct: 302 MYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAII 361

Query: 178 YSAVLRACDSLIILRQLHCGIIKVG------------FESDVFVRSALIDIYAKLGELRN 225
           +  VL AC+        H G++  G             E  +     L+DI  + G L  
Sbjct: 362 FIGVLNACN--------HAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEE 413

Query: 226 AECVFNEMP-TRDLVVWNSIIGGFAQNSDVD 255
           A+     MP + + V+W S++GG   +  +D
Sbjct: 414 AKNTIENMPISPNKVIWMSLLGGSRNHGKID 444


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/481 (41%), Positives = 306/481 (63%), Gaps = 4/481 (0%)

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
           M REG++PN FTYS +L A   +    ++H   IK  +     V +AL+D Y K G +  
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGVSPF-EMHAQAIKRNYVKSPSVGTALLDAYVKRGNVDE 59

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  VF  +  +D+V W+++I G+AQ  D + A+ ++ +M +     ++ T + ++ AC  
Sbjct: 60  ASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACAA 119

Query: 286 -LALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
             A +E G Q+H   +K  +++ L +++ALL MY K G +E A  VF R  ++D++SW++
Sbjct: 120 PTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNS 179

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           +ISG AQ+GY ++AL++FE M+   ++ + +T +GV+ AC+H G   +G  +F  M K +
Sbjct: 180 IISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDH 239

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            I+P  EHYSCM+DL GRAG L +A+++I+EMP+   A  WR LL A  +HRN ++   A
Sbjct: 240 HIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCIHRNLEVGKLA 299

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
           A K+++L PQ+P +Y+LL+N+YA+   W E A+VRK M  + + K  G SWIEV  + + 
Sbjct: 300 ADKLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKKVAGYSWIEVKNKTYT 359

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F   D SHP  ++I   L+ L  +L G GY PDT+YV QD++ E KE  +  HSE+LAI 
Sbjct: 360 FLAGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEHKEAILSQHSERLAIA 419

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           FGL+    G  ++I KNLR+CGDCH+  KL + +E + IV+RD  R+HHF+ G CSCGDY
Sbjct: 420 FGLIGTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSNRFHHFKGGLCSCGDY 479

Query: 643 W 643
           W
Sbjct: 480 W 480



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 145/290 (50%), Gaps = 14/290 (4%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   G++ +  TY+ ++         E    +H   +   +     +   LL+ +VK   
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGVSPFE----MHAQAIKRNYVKSPSVGTALLDAYVKRGN 56

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           ++EA  +F ++ E+++V+W+ MI  Y      + A+ + + M +E ++PN +T+S ++ A
Sbjct: 57  VDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINA 116

Query: 185 CDSLII----LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           C +        +QLH   IK  F + + V SAL+ +Y+K G++ +A  VF     RDLV 
Sbjct: 117 CAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVS 176

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           WNSII G+AQ+    +AL +++ M+R     D  T   V+ ACT   L   G Q +  ++
Sbjct: 177 WNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEG-QRYFDIM 235

Query: 301 KYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMIS 345
             DH +       + ++D+Y + G L  AM + + M        W T+++
Sbjct: 236 VKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLA 285


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/600 (36%), Positives = 353/600 (58%), Gaps = 14/600 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGG-FEPETFLVNILL 116
           A++ ++ M   GVR D VT+A  +  C     ++  + +H +V+        +F+ + L+
Sbjct: 257 AVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALV 316

Query: 117 NMHVKFSLLEEAQVLFDQMPE--RNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRP 173
           +M+     + +A+ +FD +P+  + +  W  MI  Y  A M+++AL L   M  E G  P
Sbjct: 317 DMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVP 376

Query: 174 NMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
              T ++VL AC   ++      +H  ++K G   + FV++AL+D+YA+LG+   A  +F
Sbjct: 377 CETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIF 436

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR---AGFAADQSTLTSVLRACTGLA 287
             +   D+V WN++I G      V +A  L + M++    G   +  TL ++L  C  LA
Sbjct: 437 AMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILA 496

Query: 288 LLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
               G ++H + +++  D D+ + +AL+DMY KCG L  + +VF R+ +++ I+W+ +I 
Sbjct: 497 APARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIM 556

Query: 346 GLAQNGYSQEALKLFESMKVS-RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI 404
               +G   EA  LF+ M  S   +PN +T +  L ACSH+G V+ G   F +M++ +G+
Sbjct: 557 AYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGV 616

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY-EPDAVTWRALLGACKVHRNTDLAICAA 463
           +P  +  +C++D+LGRAG+L EA  ++  M   E     W  +LGAC++HRN  L   A 
Sbjct: 617 EPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAG 676

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
           +++L L+P++   Y+LL NIY+ + +W   AEVR  MR RG+ KEPGCSWIEV+  IH F
Sbjct: 677 ERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRF 736

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
              +S+HP  ++++ H++ L  ++V  GY PDT+ VL D++   K   ++ HSEKLAI F
Sbjct: 737 MAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAF 796

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GL+    G TIR+ KNLR+C DCH  AK  +KM  + IV+RD  R+HHF++G CSCGDYW
Sbjct: 797 GLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 856



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 122/412 (29%), Positives = 191/412 (46%), Gaps = 25/412 (6%)

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGF--EPETFLVNILLNMHVKFSLLEEAQVLFDQMPE- 137
           IK   A      A+ +H   L  G    P   + N LL  + +   L  A  +F  + + 
Sbjct: 66  IKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDS 125

Query: 138 -RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI------- 189
             + VS+ ++ISA C  +  D AL  L  ML  G     FT  +VLRA   L        
Sbjct: 126 AHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVR 185

Query: 190 ILRQLHCGIIKVGF--ESDVFVRSALIDIYAKLGELRNAECVF-NEMPTR-DLVVWNSII 245
           + R+ H   +K G       F  +AL+ +YA+LG + +A+ +F    P R D+V WN+++
Sbjct: 186 LGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMV 245

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH- 304
               Q+   DEA+     M   G   D  T  S L AC+ L LL++G ++H +V+K D  
Sbjct: 246 SVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDEL 305

Query: 305 --DLILNNALLDMYCKCGSLEDAMSVFSRMIQ--KDVISWSTMISGLAQNGYSQEALKLF 360
             +  + +AL+DMY     +  A  VF  +    K +  W+ MI G AQ G  +EAL+LF
Sbjct: 306 AANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLF 365

Query: 361 ESMKV-SRIKPNYITIVGVLFACSHA-GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
             M+  +   P   T+  VL AC+ +  F      H   +K+  G+   R   + ++D+ 
Sbjct: 366 ARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKR--GMAGNRFVQNALMDMY 423

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
            R GK  +  + I  M   PD V+W  L+  C V  +   A   A+++  L+
Sbjct: 424 ARLGK-TDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLE 474


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/590 (36%), Positives = 339/590 (57%), Gaps = 45/590 (7%)

Query: 91  EEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY 150
           EEAK + + +     E +     I+L +   FS +E+A+  FDQMPER++V+WT M++A 
Sbjct: 71  EEAKTLFDTMQ----ERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTAMLAAN 126

Query: 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVL-------------RACDSLIILRQLHCG 197
            +    + A E    M       N+F+++++L             R  DS+     +   
Sbjct: 127 AERGQMENARETFDQMPER----NLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWT 182

Query: 198 IIKVGF-----------------ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
            +  G+                 E D+   +A++  YA  G LR    +F  MP RDL+ 
Sbjct: 183 AMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLIS 242

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKR-----AGFAADQSTLTSVLRACTGLALLELGTQV 295
           W +++    +N  ++E+  L+ RM R      G   ++ T  ++L AC+ L  L  G ++
Sbjct: 243 WATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKI 302

Query: 296 HVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H  V +  +D DL+++NAL++ Y +CG+L DA  VF  M ++DVISWS+MIS  AQ G  
Sbjct: 303 HAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRV 362

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
            EA++L+  M      P+ I  + VLFACS++G VE   + F+S+     ++P  EHY+C
Sbjct: 363 DEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYAC 422

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
           M+D+LGRAGKL++A  L+  MP+ P  + +  +L ACK++ + +    AA+ +  LDP++
Sbjct: 423 MVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPEN 482

Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQI 533
              YI L+NIY+ +++  + A +RK M  RGI K+PGCSWIEV  ++H F   D  HPQ 
Sbjct: 483 SSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQR 542

Query: 534 DKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT 593
           D+I   ++ L +++   GY  DT  VLQD+E ++KE+ + YHSEKLAI FGL+S   G  
Sbjct: 543 DEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPGAP 602

Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +RI KNLR+C DCH   K+ +K+  + I++RD  R+HHFQ+G CSC DYW
Sbjct: 603 LRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFQNGMCSCNDYW 652



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 4/176 (2%)

Query: 63  HAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF 122
           H     G+  + VT+  L+  C    A+ E + +H  V   GF+ +  + N L+N + + 
Sbjct: 269 HCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRC 328

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
             L +A+++FD M  R+V+SW++MISA+      D+A+EL   ML EG  P+   + +VL
Sbjct: 329 GALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVL 388

Query: 183 RACDSLIILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
            AC +  ++          +     E  +   + ++D+  + G+LR+AE +   MP
Sbjct: 389 FACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMP 444



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 116/254 (45%), Gaps = 32/254 (12%)

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
           + D F    ++ IYA+ G+L NA+ VF+ MP   L  W +++  FA +   +EA  L+  
Sbjct: 20  DRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSAFALSGHHEEAKTLFDT 79

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY------DHDLILNNALLDMYC 317
           M+     A    LT             L T  ++   KY      + DL+   A+L    
Sbjct: 80  MQERDLIAWTIMLTV------------LATFSNIEDAKYHFDQMPERDLVAWTAMLAANA 127

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           + G +E+A   F +M ++++ SW++++S   ++G  + A ++F+SM     + N +    
Sbjct: 128 ERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMP----EWNLVAWTA 183

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE--HYSCMIDLLGRAGKLQEAVKLIHEMP 435
           +L   S +G V      F SM       P R+   ++ M+      G L+   ++   MP
Sbjct: 184 MLTGYSLSGDVVRAKRAFDSM-------PERDLIAWTAMLSAYAFNGHLRYTREIFQRMP 236

Query: 436 YEPDAVTWRALLGA 449
            E D ++W  ++ A
Sbjct: 237 -ERDLISWATMVAA 249



 Score = 43.5 bits (101), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 10/135 (7%)

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           M+ + G +E A  +F  +  +D  SW  M+S  A++G    A  +F+ M     + +  +
Sbjct: 1   MFGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMP----RWSLGS 56

Query: 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
              +L A + +G  E+    F +M++   I      ++ M+ +L     +++A     +M
Sbjct: 57  WTALLSAFALSGHHEEAKTLFDTMQERDLI-----AWTIMLTVLATFSNIEDAKYHFDQM 111

Query: 435 PYEPDAVTWRALLGA 449
           P E D V W A+L A
Sbjct: 112 P-ERDLVAWTAMLAA 125


>gi|224135801|ref|XP_002327307.1| predicted protein [Populus trichocarpa]
 gi|222835677|gb|EEE74112.1| predicted protein [Populus trichocarpa]
          Length = 527

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/538 (41%), Positives = 320/538 (59%), Gaps = 23/538 (4%)

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L+ A+ +FD+M  RNVVSWT +IS Y     + +   L   ML +   PN F 
Sbjct: 1   MYAKCGDLDRARQVFDEMGRRNVVSWTALISGYAQHGRSYECFSLFSDMLVD-CYPNEFA 59

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK------LGELRNAECVFN 231
           +++V+ +CD  +  +Q+H   +K+G  + V+V +ALI  Y+K      +G    A  VF 
Sbjct: 60  FASVIISCD-YVCGKQVHALALKMGLIASVYVGNALITRYSKSCEDNFVGYGSEACRVFE 118

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
            M  R+LV WNS+I         +EAL L++++ R G A D  T + VL+AC G      
Sbjct: 119 SMEFRNLVSWNSMIAA------EEEALLLFRQLYREGLAPDWCTFSIVLKACAGFVTERH 172

Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
              V+  V+K  ++ D +L N L+  Y +CGS+  +  VF +M  +DV+SW++MI   A 
Sbjct: 173 ALAVYSQVVKAGFEDDRVLANTLIHAYARCGSISFSKQVFDKMRSRDVVSWNSMIKAYAL 232

Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           +G ++EAL LF  M V   +P+  T+V +L ACSHAG VE+G N F SM   +G+ P  +
Sbjct: 233 HGQAKEALHLFSEMNV---RPDSATMVALLSACSHAGLVEEGINIFDSMSMNHGVSPQLD 289

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
           HY+CM+D+LGRAG L EA +LI  MP +PD+V W ALL +C+ +  T LA  AA K+  L
Sbjct: 290 HYACMVDILGRAGLLLEAGELISRMPMKPDSVVWSALLSSCRKYGETQLAKLAADKLKEL 349

Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
           +P +   Y+ +SNIY +   ++E   +R  M    + KEPG SWIE+  ++H F      
Sbjct: 350 EPGNSLGYVQISNIYCSGGSYNEAGLIRDEMNGSRVRKEPGLSWIEIENRVHEFASGGRR 409

Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS-- 587
           HPQ + I   L  LI +L GVGY P+T+  LQD+E E K++ + +HSEKLA+VF LMS  
Sbjct: 410 HPQREAIYAKLYSLIGQLKGVGYVPETSLALQDIEEEHKQEQLYHHSEKLALVFALMSEG 469

Query: 588 --LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
                G  IRI KN+RIC DCH F KL + +  + IV+RD  R+HHF++  CSC DYW
Sbjct: 470 SLCCGGGVIRIVKNIRICVDCHNFMKLASDLLQKEIVVRDSNRFHHFKNRMCSCNDYW 527



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 24/190 (12%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+  D  T++ ++K C        A  V++ V+  GFE +  L N L++ + +   +  +
Sbjct: 149 GLAPDWCTFSIVLKACAGFVTERHALAVYSQVVKAGFEDDRVLANTLIHAYARCGSISFS 208

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +FD+M  R+VVSW +MI AY    ++ +A E L       VRP+  T  A+L AC   
Sbjct: 209 KQVFDKMRSRDVVSWNSMIKAY---ALHGQAKEALHLFSEMNVRPDSATMVALLSACS-- 263

Query: 189 IILRQLHCGIIKVG---FES---------DVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
                 H G+++ G   F+S          +   + ++DI  + G L  A  + + MP +
Sbjct: 264 ------HAGLVEEGINIFDSMSMNHGVSPQLDHYACMVDILGRAGLLLEAGELISRMPMK 317

Query: 237 -DLVVWNSII 245
            D VVW++++
Sbjct: 318 PDSVVWSALL 327


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/621 (36%), Positives = 339/621 (54%), Gaps = 45/621 (7%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHA-----VEEAKLVHNHVLSGGFEPETFLVNILLNMH 119
           M   G R D+ T+  L+K  +AR A        A+ VH HV+  G      + + L+  +
Sbjct: 10  MLARGGRPDAYTFPALLKA-VARAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVAAY 68

Query: 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS 179
                   A+ L  +      V+W  +IS +       ++    + M R G  P   TY 
Sbjct: 69  TAGGDGAAARALVGECD--TPVAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYV 126

Query: 180 AVLRACD----SLIILRQLHCGIIKVGFESDVFVRSALIDIYA----------------- 218
           +VL AC      +++  Q+H  ++  G   D+ V +AL+D+YA                 
Sbjct: 127 SVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQV 186

Query: 219 --------------KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
                         +LG++  A  +F+ MP RD V W ++I G+   +   EAL +++ M
Sbjct: 187 RSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREM 246

Query: 265 KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSL 322
           + +  +AD+ T+ SV+ AC  L  LE+G  V V++ +     D  + NAL+DMY KCGS+
Sbjct: 247 QYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSI 306

Query: 323 EDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
           E A+ VF  M  +D  +W+ +I GLA NGY +EA+++F  M      P+ +T +GVL AC
Sbjct: 307 ERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTAC 366

Query: 383 SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVT 442
           +HAG V+ G   F SM + Y I P   HY C+IDLLGRAGK+ EA+  I +MP  P++  
Sbjct: 367 THAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTI 426

Query: 443 WRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502
           W  LL AC+VH N+++    A+++L LDP++   YILLSNIYA   +W++V  +R  +  
Sbjct: 427 WGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIME 486

Query: 503 RGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQD 562
           +GI KEPGCS IE++  IH F   D SHP   +I   L+ +I  L  VGY PD   V  +
Sbjct: 487 KGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVE 546

Query: 563 LEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIV 622
           +  ++K+  + +HSEKLAI F L+S      IRI KNLR+C DCH   KL +++  + +V
Sbjct: 547 VAEKEKKKVLYWHSEKLAIAFALLSSKPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVV 606

Query: 623 IRDPIRYHHFQDGNCSCGDYW 643
           +RD  R+HHF+ G CSC DYW
Sbjct: 607 VRDRTRFHHFRHGFCSCKDYW 627



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 128/302 (42%), Gaps = 31/302 (10%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           R++ S       + +      A++    MQ   V AD  T   +I  C    A+E  + V
Sbjct: 218 RDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWV 277

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
             ++   G + + F+ N L++M+ K   +E A  +F  M  R+  +WT +I         
Sbjct: 278 RVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYE 337

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDI 216
           ++A+E+   M+R    P+  T+  VL AC         H G++  G E   F+  ++I+ 
Sbjct: 338 EEAIEMFHRMIRVSETPDEVTFIGVLTACT--------HAGLVDKGRE--FFL--SMIEA 385

Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
           Y             N  P  ++V +  II    +   + EAL+   +M       + +  
Sbjct: 386 Y-------------NIAP--NVVHYGCIIDLLGRAGKITEALDTIDQMP---MTPNSTIW 427

Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALL-DMYCKCGSLEDAMSVFSRMIQK 335
            ++L AC      E+G  V   +L+ D +  +   LL ++Y KC   ED   +   +++K
Sbjct: 428 GTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEK 487

Query: 336 DV 337
            +
Sbjct: 488 GI 489


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/600 (36%), Positives = 353/600 (58%), Gaps = 14/600 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGG-FEPETFLVNILL 116
           A++ ++ M   GVR D VT+A  +  C     ++  + +H +V+        +F+ + L+
Sbjct: 255 AVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALV 314

Query: 117 NMHVKFSLLEEAQVLFDQMPE--RNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRP 173
           +M+     + +A+ +FD +P+  + +  W  MI  Y  A M+++AL L   M  E G  P
Sbjct: 315 DMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVP 374

Query: 174 NMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
              T ++VL AC   ++      +H  ++K G   + FV++AL+D+YA+LG+   A  +F
Sbjct: 375 CETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIF 434

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR---AGFAADQSTLTSVLRACTGLA 287
             +   D+V WN++I G      V +A  L + M++    G   +  TL ++L  C  LA
Sbjct: 435 AMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILA 494

Query: 288 LLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
               G ++H + +++  D D+ + +AL+DMY KCG L  + +VF R+ +++ I+W+ +I 
Sbjct: 495 APARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIM 554

Query: 346 GLAQNGYSQEALKLFESMKVS-RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI 404
               +G   EA  LF+ M  S   +PN +T +  L ACSH+G V+ G   F +M++ +G+
Sbjct: 555 AYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGV 614

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY-EPDAVTWRALLGACKVHRNTDLAICAA 463
           +P  +  +C++D+LGRAG+L EA  ++  M   E     W  +LGAC++HRN  L   A 
Sbjct: 615 EPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAG 674

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
           +++L L+P++   Y+LL NIY+ + +W   AEVR  MR RG+ KEPGCSWIEV+  IH F
Sbjct: 675 ERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRF 734

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
              +S+HP  ++++ H++ L  ++V  GY PDT+ VL D++   K   ++ HSEKLAI F
Sbjct: 735 MAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAF 794

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GL+    G TIR+ KNLR+C DCH  AK  +KM  + IV+RD  R+HHF++G CSCGDYW
Sbjct: 795 GLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 122/412 (29%), Positives = 191/412 (46%), Gaps = 25/412 (6%)

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGF--EPETFLVNILLNMHVKFSLLEEAQVLFDQMPE- 137
           IK   A      A+ +H   L  G    P   + N LL  + +   L  A  +F  + + 
Sbjct: 64  IKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDS 123

Query: 138 -RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI------- 189
             + VS+ ++ISA C  +  D AL  L  ML  G     FT  +VLRA   L        
Sbjct: 124 AHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVR 183

Query: 190 ILRQLHCGIIKVGF--ESDVFVRSALIDIYAKLGELRNAECVF-NEMPTR-DLVVWNSII 245
           + R+ H   +K G       F  +AL+ +YA+LG + +A+ +F    P R D+V WN+++
Sbjct: 184 LGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMV 243

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH- 304
               Q+   DEA+     M   G   D  T  S L AC+ L LL++G ++H +V+K D  
Sbjct: 244 SVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDEL 303

Query: 305 --DLILNNALLDMYCKCGSLEDAMSVFSRMIQ--KDVISWSTMISGLAQNGYSQEALKLF 360
             +  + +AL+DMY     +  A  VF  +    K +  W+ MI G AQ G  +EAL+LF
Sbjct: 304 AANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLF 363

Query: 361 ESMKV-SRIKPNYITIVGVLFACSHA-GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
             M+  +   P   T+  VL AC+ +  F      H   +K+  G+   R   + ++D+ 
Sbjct: 364 ARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKR--GMAGNRFVQNALMDMY 421

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
            R GK  +  + I  M   PD V+W  L+  C V  +   A   A+++  L+
Sbjct: 422 ARLGK-TDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLE 472


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/600 (36%), Positives = 353/600 (58%), Gaps = 14/600 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGG-FEPETFLVNILL 116
           A++ ++ M   GVR D VT+A  +  C     ++  + +H +V+        +F+ + L+
Sbjct: 255 AVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALV 314

Query: 117 NMHVKFSLLEEAQVLFDQMPE--RNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRP 173
           +M+     + +A+ +FD +P+  + +  W  MI  Y  A M+++AL L   M  E G  P
Sbjct: 315 DMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVP 374

Query: 174 NMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
              T ++VL AC   ++      +H  ++K G   + FV++AL+D+YA+LG+   A  +F
Sbjct: 375 CETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIF 434

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR---AGFAADQSTLTSVLRACTGLA 287
             +   D+V WN++I G      V +A  L + M++    G   +  TL ++L  C  LA
Sbjct: 435 AMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILA 494

Query: 288 LLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
               G ++H + +++  D D+ + +AL+DMY KCG L  + +VF R+ +++ I+W+ +I 
Sbjct: 495 APARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIM 554

Query: 346 GLAQNGYSQEALKLFESMKVS-RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI 404
               +G   EA  LF+ M  S   +PN +T +  L ACSH+G V+ G   F +M++ +G+
Sbjct: 555 AYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGV 614

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY-EPDAVTWRALLGACKVHRNTDLAICAA 463
           +P  +  +C++D+LGRAG+L EA  ++  M   E     W  +LGAC++HRN  L   A 
Sbjct: 615 EPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAG 674

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
           +++L L+P++   Y+LL NIY+ + +W   AEVR  MR RG+ KEPGCSWIEV+  IH F
Sbjct: 675 ERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRF 734

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
              +S+HP  ++++ H++ L  ++V  GY PDT+ VL D++   K   ++ HSEKLAI F
Sbjct: 735 MAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAF 794

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GL+    G TIR+ KNLR+C DCH  AK  +KM  + IV+RD  R+HHF++G CSCGDYW
Sbjct: 795 GLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 122/412 (29%), Positives = 191/412 (46%), Gaps = 25/412 (6%)

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGF--EPETFLVNILLNMHVKFSLLEEAQVLFDQMPE- 137
           IK   A      A+ +H   L  G    P   + N LL  + +   L  A  +F  + + 
Sbjct: 64  IKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDS 123

Query: 138 -RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI------- 189
             + VS+ ++ISA C  +  D AL  L  ML  G     FT  +VLRA   L        
Sbjct: 124 AHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVR 183

Query: 190 ILRQLHCGIIKVGF--ESDVFVRSALIDIYAKLGELRNAECVF-NEMPTR-DLVVWNSII 245
           + R+ H   +K G       F  +AL+ +YA+LG + +A+ +F    P R D+V WN+++
Sbjct: 184 LGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMV 243

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH- 304
               Q+   DEA+     M   G   D  T  S L AC+ L LL++G ++H +V+K D  
Sbjct: 244 SVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDEL 303

Query: 305 --DLILNNALLDMYCKCGSLEDAMSVFSRMIQ--KDVISWSTMISGLAQNGYSQEALKLF 360
             +  + +AL+DMY     +  A  VF  +    K +  W+ MI G AQ G  +EAL+LF
Sbjct: 304 AANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLF 363

Query: 361 ESMKV-SRIKPNYITIVGVLFACSHA-GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
             M+  +   P   T+  VL AC+ +  F      H   +K+  G+   R   + ++D+ 
Sbjct: 364 ARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKR--GMAGNRFVQNALMDMY 421

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
            R GK  +  + I  M   PD V+W  L+  C V  +   A   A+++  L+
Sbjct: 422 ARLGK-TDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLE 472


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/610 (36%), Positives = 346/610 (56%), Gaps = 10/610 (1%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++    R C   D  +  K M A    GVR DS T A ++        V+    +   
Sbjct: 173 NTMITGLVRNCCYDDSVQVFKDMVA---QGVRLDSTTVATVLPAVAEMQEVKVGMGIQCL 229

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
            L  GF  + +++  L+++  K   ++ A++LF  + + ++VS+  +IS +      + A
Sbjct: 230 ALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECA 289

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGI----IKVGFESDVFVRSALID 215
           ++    +L  G R +  T   ++        L  L C I    +K G      V +AL  
Sbjct: 290 VKYFRELLVSGQRVSSSTMVGLIPVSSPFGHL-HLACCIQGFCVKSGTILQPSVSTALTT 348

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           IY++L E+  A  +F+E   + +  WN++I G+AQ+   + A++L++ M    F  +  T
Sbjct: 349 IYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVT 408

Query: 276 LTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
           +TS+L AC  L  L  G  VH  +     + ++ ++ AL+DMY KCG++ +A  +F    
Sbjct: 409 ITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTS 468

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393
           +K+ ++W+TMI G   +GY  EALKLF  M     +P+ +T + VL+ACSHAG V +G  
Sbjct: 469 EKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDE 528

Query: 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
            F +M   Y I+P  EHY+CM+D+LGRAG+L++A++ I +MP EP    W  LLGAC +H
Sbjct: 529 IFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIH 588

Query: 454 RNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSW 513
           ++T+LA  A++++  LDP + G Y+LLSNIY+  + + + A VR+ ++ R ++K PGC+ 
Sbjct: 589 KDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTL 648

Query: 514 IEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQ 573
           IEVN   H F   D SH Q   I   L+ L  K+  +GY  +T   L D+E E+KE    
Sbjct: 649 IEVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFN 708

Query: 574 YHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQ 633
            HSEKLAI FGL++   G  IRI KNLR+C DCH   K  +K+  + IV+RD  R+HHF+
Sbjct: 709 VHSEKLAIAFGLITTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFK 768

Query: 634 DGNCSCGDYW 643
           DG CSCGDYW
Sbjct: 769 DGICSCGDYW 778



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 193/409 (47%), Gaps = 41/409 (10%)

Query: 78  AELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE 137
           A + K C   H  E     H  ++  G++ +   V  L            A+ LF  +P+
Sbjct: 13  ALISKACTFPHLAE----THAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPK 68

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSLIILRQLHC 196
            ++  +  +I  +  +  +  ++     +L+   + P+ FTY+  + A     +   LH 
Sbjct: 69  PDIFLFNVLIKGFSFSP-DASSISFYTHLLKNTTLSPDNFTYAFAISASPDDNLGMCLHA 127

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
             +  GF+S++FV SAL+D+Y K   +  A  VF++MP RD V+WN++I G  +N   D+
Sbjct: 128 HAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDD 187

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLD 314
           ++ ++K M   G   D +T+ +VL A   +  +++G  +    LK  +  D  +   L+ 
Sbjct: 188 SVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLIS 247

Query: 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
           ++ KC  ++ A  +F  + + D++S++ +ISG + NG ++ A+K F  + VS  + +  T
Sbjct: 248 VFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSST 307

Query: 375 IVGVL----------FACSHAGF-VEDGW----NHFKSMKKFYG----IDPGREHY---- 411
           +VG++           AC   GF V+ G     +   ++   Y     ID  R+ +    
Sbjct: 308 MVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESS 367

Query: 412 -------SCMIDLLGRAGKLQEAVKLIHEM---PYEPDAVTWRALLGAC 450
                  + MI    ++G  + A+ L  EM    + P+ VT  ++L AC
Sbjct: 368 EKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSAC 416


>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
 gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
          Length = 805

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/600 (37%), Positives = 333/600 (55%), Gaps = 9/600 (1%)

Query: 52  QRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVE--EAKLVHNHVLSGGFEPE 108
           Q   PR A++  + M   G+  D VT+  + K C +  ++   + K  H  +   G   +
Sbjct: 207 QNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHACLDETGLGSD 266

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             +   L+N + +   ++ A+  F +MPERN VSWT+MI+A+     +  A+E    ML 
Sbjct: 267 VVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTSMIAAFTQIG-HLLAVETFHAMLL 325

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
           EGV P   T  A L  C+ L + R +     ++G  +DV + + L+  YA+     +A  
Sbjct: 326 EGVVPTRSTLFAALEGCEDLRVARLVEAIAQEIGVVTDVAIVTDLVMAYARCDGQEDAIR 385

Query: 229 VFN--EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
           VF+  E    D  +  ++I  +AQ  D      L+      G + D+    + L AC  L
Sbjct: 386 VFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDACASL 445

Query: 287 ALLELGTQVHVHVL---KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           A L  G Q+H  V    + D D+ L NA++ MY +CGSL DA   F  M  +D ISW+ M
Sbjct: 446 AALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAM 505

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           +S  AQ+G  ++   LF +M         I  + +L AC+HAG V+ G  HF +M   +G
Sbjct: 506 LSASAQHGRVEDCCDLFRAMLQEGFDAERIAFLNLLSACAHAGLVKAGCEHFSAMTGDHG 565

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           + P  EHY CM+DLLGR G+L +A  ++  MP  PDA TW AL+GAC+++ +T+    AA
Sbjct: 566 VVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYGDTERGRFAA 625

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
           +++L L       Y+ L NIY+ + +WD+ A VRK M   G+ K PG S IE+  ++H F
Sbjct: 626 ERVLELRADHTAAYVALCNIYSAAGRWDDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEF 685

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
            V D SHPQ + I   L+ ++  +   GY   T  VL D+E EQKE  +++HSEKLAI F
Sbjct: 686 VVRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLLRFHSEKLAIAF 745

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           G+MS  QG T+R+ KNLR+C DCH  +K  +K+  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 746 GMMSTPQGSTLRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRFHHFKDGACSCGDYW 805



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 161/319 (50%), Gaps = 13/319 (4%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP-ETFLVNILLNMHVKFSLLEEAQVL 131
           DS     L++ C   +++   KL+H+ + S      + +L + L+ M+++   LE A  +
Sbjct: 28  DSAAAVRLVREC---NSIARGKLLHSKISSSPSLSRDGYLASSLVYMYLRCGSLESAIDV 84

Query: 132 FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS---L 188
           F ++  +++V WT +ISAY     +  A+ L   +L+EG+  +   + +VL AC S   L
Sbjct: 85  FHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEFL 144

Query: 189 IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGG 247
              R +H   ++ G      V SAL+ +Y + G LR+A  +F  +    D+V+WN++I  
Sbjct: 145 AAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITA 204

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV----LKYD 303
            +QN    EAL ++ RM + G   D  T  SV +AC+    L        H         
Sbjct: 205 NSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHACLDETGLG 264

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D+++  AL++ Y +CG ++ A   F+ M +++ +SW++MI+   Q G+   A++ F +M
Sbjct: 265 SDVVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTSMIAAFTQIGHLL-AVETFHAM 323

Query: 364 KVSRIKPNYITIVGVLFAC 382
            +  + P   T+   L  C
Sbjct: 324 LLEGVVPTRSTLFAALEGC 342



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 141/274 (51%), Gaps = 6/274 (2%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFES-DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
           ++R C+S+   + LH  I      S D ++ S+L+ +Y + G L +A  VF+++  + +V
Sbjct: 35  LVRECNSIARGKLLHSKISSSPSLSRDGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIV 94

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
           +W  +I  +        A+ L+ R+ + G A D     SVL AC+    L  G  +H   
Sbjct: 95  LWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCA 154

Query: 300 LKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQK-DVISWSTMISGLAQNGYSQEA 356
           ++    L  I+ +AL+ MY +CGSL DA ++F  + +  DV+ W+ MI+  +QNG  +EA
Sbjct: 155 VEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITANSQNGSPREA 214

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW-NHFKSMKKFYGIDPGREHYSCMI 415
           L++F  M    I P+ +T V V  ACS +  +       F +     G+       + ++
Sbjct: 215 LEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHACLDETGLGSDVVVATALV 274

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           +   R G++  A K   EMP E +AV+W +++ A
Sbjct: 275 NAYARCGEIDCARKFFAEMP-ERNAVSWTSMIAA 307



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 4/209 (1%)

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
           D +    ++R C  +A  +L             D  L ++L+ MY +CGSLE A+ VF +
Sbjct: 28  DSAAAVRLVRECNSIARGKLLHSKISSSPSLSRDGYLASSLVYMYLRCGSLESAIDVFHK 87

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           +  K ++ W+ +IS     G+S  A+ LF  +    I  + I  V VL ACS   F+  G
Sbjct: 88  IAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEFLAAG 147

Query: 392 -WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
              H  +++   G+       S ++ + GR G L++A  L   +    D V W A++ A 
Sbjct: 148 RLIHRCAVEAGLGLQEIVA--SALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITAN 205

Query: 451 KVHRNTDLAICAAKKILNLD-PQDPGTYI 478
             + +   A+    ++L L  P D  T++
Sbjct: 206 SQNGSPREALEIFYRMLQLGIPPDLVTFV 234


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/594 (37%), Positives = 351/594 (59%), Gaps = 39/594 (6%)

Query: 88  HAVEEAKLVHNHVLSGGF--EPETFLVNILLN-MHVKFSLLEEAQVLFDQMPERNVVSWT 144
           H+V+E   +H  +L       P   ++N+ L+  +     +  +  LF Q  + ++  +T
Sbjct: 38  HSVDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFT 97

Query: 145 TMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFE 204
             I+      + D+A  L + +L   + PN FT+S++L++C S    + +H  ++K G  
Sbjct: 98  AAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSC-STKSGKLIHTHVLKFGLG 156

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMP------------------------------ 234
            D +V + L+DIYAK G++ +A+ VF+ MP                              
Sbjct: 157 LDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRM 216

Query: 235 -TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLRACTGLALLELG 292
             RD+V WN +I G++Q+    +AL L++++   G    D+ T+ + L AC+ +  LE G
Sbjct: 217 CERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETG 276

Query: 293 TQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
             +HV V   +   ++ +  AL+DMY KCGSLE+A+ VF+   +KD+++W+ MI+G A +
Sbjct: 277 RWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMH 336

Query: 351 GYSQEALKLFESMK-VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           GYSQ+AL+LF+ M+ ++ ++P  IT +G L AC+HAG V +G   F+SM + YGI P  E
Sbjct: 337 GYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIE 396

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
           HY C++ LLGRAG+L+ A ++I  M  E D+V W ++LG+CK+H    L    A+ ++  
Sbjct: 397 HYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQ 456

Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
           +  + G Y+LLSNIYA    ++ VA+VR  M+ +GI KEPG S IE++ ++H F   D  
Sbjct: 457 NISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDRE 516

Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
           H +  +I   L+ + +++   GY P+TN VL DLE  +KE S+Q HSE+LAI +GL+S  
Sbjct: 517 HLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIAYGLISTK 576

Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            G  ++I KNLR+C DCHT  KL +K+  + IV+RD  R+HHF DG+CSC D+W
Sbjct: 577 PGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 22/190 (11%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           + D +T    +  C    A+E  + +H  V S        +   L++M+ K   LEEA +
Sbjct: 254 KPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVL 313

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR-EGVRPNMFTYSAVLRACDSLI 189
           +F+  P +++V+W  MI+ Y     +  AL L   M    G++P   T+   L+AC    
Sbjct: 314 VFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQAC---- 369

Query: 190 ILRQLHCGIIKVG---FES---------DVFVRSALIDIYAKLGELRNA-ECVFNEMPTR 236
                H G++  G   FES          +     L+ +  + G+L+ A E + N     
Sbjct: 370 ----AHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEA 425

Query: 237 DLVVWNSIIG 246
           D V+W+S++G
Sbjct: 426 DSVLWSSVLG 435


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/573 (38%), Positives = 342/573 (59%), Gaps = 12/573 (2%)

Query: 81   IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
            +  C     +   + VH   +  G + +T + N+L+ M+ +   + +   +F+ M E + 
Sbjct: 488  LSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDE 547

Query: 141  VSWTTMISAYCDAKMN-DKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHC 196
            VSW TM+     ++    + +++   M+R G+ PN  T+  +L A   L +L   +Q+H 
Sbjct: 548  VSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHA 607

Query: 197  GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVD 255
             ++K G   D  V +ALI  YAK G++ + E +F  M  R D + WNS+I G+  N ++ 
Sbjct: 608  AVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQ 667

Query: 256  EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
            EA++    M  +G   D  T + +L AC  +A LE G ++H   ++   + D+++ +AL+
Sbjct: 668  EAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLESDVVVESALV 727

Query: 314  DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
            DMY KCG ++ A  +F+ M Q++  SW++MISG A++G  ++A+++FE M  SR  P+++
Sbjct: 728  DMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHV 787

Query: 374  TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
            T V VL ACSHAG VE G  +F+ M   +GI P  EHYSC+IDLLGRAGK+ +  + I  
Sbjct: 788  TFVSVLSACSHAGLVERGLEYFEMMPD-HGILPQIEHYSCVIDLLGRAGKIDKIKEYIQR 846

Query: 434  MPYEPDAVTWRALLGACKVHR---NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
            MP EP+A+ WR +L AC+  +   N DL   A++ +L ++PQ+P  Y+L SN +A +  W
Sbjct: 847  MPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNPVNYVLASNFHAATGMW 906

Query: 491  DEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGV 550
            ++ A+ R  MR     KE G SW+ +N  +H F   D SHP   +I + L  LIQ +   
Sbjct: 907  EDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFIAGDRSHPNTKEIYEKLNFLIQNIRNA 966

Query: 551  GYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFA 610
            GY P T Y L DLE E KE+ + YHSEKLAI F L   + G  IRI KNLR+CGDCH   
Sbjct: 967  GYVPLTEYALYDLEEENKEELLSYHSEKLAIAFVLTRSSSGP-IRIMKNLRVCGDCHIAF 1025

Query: 611  KLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +  ++M ++ I++RD IR+HHF+DG CSCGDYW
Sbjct: 1026 RYISQMISRQIILRDSIRFHHFKDGKCSCGDYW 1058



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 180/362 (49%), Gaps = 15/362 (4%)

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           VL  G   + ++ + L++   +  L +EA+ +F  + ++N V+   +I        +++A
Sbjct: 301 VLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEA 360

Query: 160 LELLIFMLREGVRPNMFTYSAVLRAC-------DSLIILRQLHCGIIKVGF-ESDVFVRS 211
           +++ +   R  V  N  TY  +L A        + L I R +H  +++ G  +  + V +
Sbjct: 361 VKIFVGT-RNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSN 419

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
            L+++YAK G + +A  +F  M   D + WN+II    QN + +EA+  Y  M+++  + 
Sbjct: 420 GLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISP 479

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVF 329
               L S L +C GL LL  G QVH   +K+  D D  ++N L+ MY +CG++ D   VF
Sbjct: 480 SNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVF 539

Query: 330 SRMIQKDVISWSTMISGLAQNGYS-QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           + M + D +SW+TM+  +A +     E +K+F +M    + PN +T + +L A S    +
Sbjct: 540 NSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVL 599

Query: 389 EDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           E G   H   MK  +G+       + +I    ++G +     L   M    DA++W +++
Sbjct: 600 ELGKQVHAAVMK--HGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMI 657

Query: 448 GA 449
             
Sbjct: 658 SG 659



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 190/386 (49%), Gaps = 23/386 (5%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  ++  G   + FL N L+N + K + L  A  +FD+MPERN VSWT ++S Y    +
Sbjct: 83  LHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGI 142

Query: 156 NDKALELLIFMLRE---GVRPNMFTYSAVLRAC-----DSLIILRQLHCGIIKVGFESDV 207
            ++A  +   MLRE   G RP  FT+  +LRAC     D L    Q+H  + K  + S+ 
Sbjct: 143 AEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNT 202

Query: 208 FVRSALIDIYAK--LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
            V +ALI +Y    +G    A+ VF+  P RDL+ WN+++  +A+  DV     L+K M+
Sbjct: 203 TVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQ 262

Query: 266 RAG----FAADQSTLTSVL-RACTGLALLELGTQVHVHVLKY--DHDLILNNALLDMYCK 318
           R          + T  S++  A        +  QV V VLK     DL + +AL+  + +
Sbjct: 263 RGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFAR 322

Query: 319 CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
            G  ++A  +F  + QK+ ++ + +I GL +  +S+EA+K+F   + + +  N  T V +
Sbjct: 323 HGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTR-NTVDVNADTYVVL 381

Query: 379 LFACSHAGFVEDGWNHFK----SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434
           L A +     E+G    +     M +    D      + ++++  + G ++ A K+   M
Sbjct: 382 LSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLM 441

Query: 435 PYEPDAVTWRALLGACKVHRNTDLAI 460
               D ++W  ++ A   + N + A+
Sbjct: 442 E-ATDRISWNTIISALDQNGNCEEAV 466



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 98/217 (45%), Gaps = 20/217 (9%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           + Y  +L  AM  +  M   G   D  T++ ++  C +  A+E    +H   +    E +
Sbjct: 660 YIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLESD 719

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             + + L++M+ K   ++ A  LF+ M +RN  SW +MIS Y    +  KA+E+   MLR
Sbjct: 720 VVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLR 779

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFE-----------SDVFVRSALIDIY 217
               P+  T+ +VL AC         H G+++ G E             +   S +ID+ 
Sbjct: 780 SRESPDHVTFVSVLSACS--------HAGLVERGLEYFEMMPDHGILPQIEHYSCVIDLL 831

Query: 218 AKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSD 253
            + G++   +     MP   + ++W +++    Q+ D
Sbjct: 832 GRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKD 868


>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
 gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
          Length = 487

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/488 (42%), Positives = 305/488 (62%), Gaps = 11/488 (2%)

Query: 166 MLREGVRPNMFTYSAVLRACDS----LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
           M +EGV P+   + A L AC      L + + +H  +++ G ES+  V +AL+++Y K G
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAG 60

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA---DQSTLTS 278
            L  A  VF  +  +DLV W +++  +++     EAL L++ M   G      D+S    
Sbjct: 61  CLDEATRVFRGLERKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAF 120

Query: 279 VLRACTGLALLELGTQVHVHVLK--YDH-DLILNNALLDMYCKCGSLEDAMSVFSRMIQK 335
           +L+AC  L+    G   H  + +  YD  D +L   +++MY KCG+L  A  VF  M ++
Sbjct: 121 LLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSER 180

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
           D ++W+T+ISG A +G+S+E+L +F  M+    KP+ ++++ VL  CSHAG VE GW+ F
Sbjct: 181 DTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFF 240

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN 455
             + K +G++PG +HY CMIDLLGR+G L+ A  +I  MP++  A+ W   L ACKVH +
Sbjct: 241 LDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSD 300

Query: 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE 515
           T+    AA+K+L L+P  P  Y+ LSNIYA + +WD+V  VR  M+A G+ K+PG S IE
Sbjct: 301 TERGKRAAEKVLELEPV-PAAYVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSIE 359

Query: 516 VNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYH 575
           VN ++H F   D SHP+  +I   L+ L +++ G GY PDT  VL ++  EQKE  + +H
Sbjct: 360 VNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLLNVSEEQKERLLCFH 419

Query: 576 SEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDG 635
           SEKLAI FGL+S   G ++RI KNLR+CGDCHT AK  +++  + I +RD  R+HHFQDG
Sbjct: 420 SEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRFHHFQDG 479

Query: 636 NCSCGDYW 643
           +CSCGDYW
Sbjct: 480 HCSCGDYW 487



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 175/359 (48%), Gaps = 19/359 (5%)

Query: 65  MQCHGVRADSVTY-AELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123
           MQ  GV  D + + A L  C  A   +   KL+H+ VL  G E  T +   L+NM+ K  
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAG 60

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML---REGVRPNMFTYSA 180
            L+EA  +F  +  +++VSWT ++SAY    +  +AL+L   M     +G +P+   ++ 
Sbjct: 61  CLDEATRVFRGLERKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAF 120

Query: 181 VLRACDSLIIL---RQLHCGIIKVGFE-SDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           +L+AC +L      R  H  I + G++ SD  +   +I++Y K G LR A  VF+ M  R
Sbjct: 121 LLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSER 180

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           D V W +II G+A +   +E+L ++ RM++ G   D  +L  VL  C+   L+E G    
Sbjct: 181 DTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFF 240

Query: 297 VHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGY 352
           + + K    +        ++D+  + G LE A  +  RM  Q   ++W+  ++    +  
Sbjct: 241 LDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSD 300

Query: 353 SQEALKLFES-MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI--DPGR 408
           ++   +  E  +++  +   Y+++  +  A        D  +  +S  K  G+  DPGR
Sbjct: 301 TERGKRAAEKVLELEPVPAAYVSLSNIYAAAGEW----DQVDRVRSAMKAMGLQKDPGR 355



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 102/224 (45%), Gaps = 6/224 (2%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++L+  ++R    R+  +  + M      G + D   +A L++ C    A  E +L H  
Sbjct: 81  TALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAFLLQACATLSAAAEGRLAHRR 140

Query: 100 VLSGGFEPETFLVNI-LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
           +   G++    ++ + ++NM+ K   L  A  +FD M ER+ V+WTT+IS Y     +++
Sbjct: 141 IQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEE 200

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIK-VGFESDVFVRSALI 214
           +L +   M ++G +P+  +   VL  C    ++ Q       I K  G E        +I
Sbjct: 201 SLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMI 260

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVV-WNSIIGGFAQNSDVDEA 257
           D+  + G+L  AE +   MP +   + W   +     +SD +  
Sbjct: 261 DLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSDTERG 304


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/572 (38%), Positives = 334/572 (58%), Gaps = 11/572 (1%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQMPE 137
           L+K C    ++EE K VH H+L  G   ++F  + L+      ++  +E A  +F Q+ E
Sbjct: 36  LLKRC---KSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEE 92

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QL 194
                + TMI    ++   ++AL L + ML  G+ P+ FTY  VL+AC  L  L+   Q+
Sbjct: 93  PGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQI 152

Query: 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254
           H  + K G E DVFV++ LI++Y K G + +A  VF +M  + +  W+SIIG  A     
Sbjct: 153 HAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMW 212

Query: 255 DEALNLYKRMKRAG-FAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNA 311
            E L L   M   G   A++S L S L ACT L     G  +H  +L+   +L   +  +
Sbjct: 213 HECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKTS 272

Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           L+DMY K GSLE  + VF  M QK+  S++ +I+GLA +G  +EAL +F  M    + P+
Sbjct: 273 LIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPD 332

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            +  VGVL ACSHAG V +G   F  ++  + I P  +HY CM+DL+GRAG L+ A  LI
Sbjct: 333 DVVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLI 392

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
             MP +P+ V WR+LL ACKVH N ++   AA+ I  L+  +PG Y++L+N+YA ++KW 
Sbjct: 393 KSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFKLNQHNPGDYLVLANMYARAKKWA 452

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
           +VA +R  M  + + + PG S +E N+ ++ F   D S PQ + I   ++ +  +L   G
Sbjct: 453 DVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEG 512

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           Y PD + VL D++ ++K   +++HS+KLAI F L+  ++G  IRI +N+R+C DCHT+ K
Sbjct: 513 YTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSRIRISRNIRMCNDCHTYTK 572

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             + +  + I +RD  R+HHF+DG CSC DYW
Sbjct: 573 FISVIYEREITVRDRNRFHHFKDGTCSCKDYW 604



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 143/314 (45%), Gaps = 48/314 (15%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRD 237
           ++L+ C S+   +Q+H  I+K+G   D F  S L+   A  + G +  A  +F ++    
Sbjct: 35  SLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEPG 94

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
              +N++I G   + +++EAL LY  M   G   D  T   VL+AC+ L  L+ G Q+H 
Sbjct: 95  SFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHA 154

Query: 298 HVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           HV K   + D+ + N L++MY KCG++E A  VF +M +K V SWS++I   A      E
Sbjct: 155 HVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHE 214

Query: 356 ALKLFESMK-VSRIKPNYITIVGVLFACSH------------------------------ 384
            L L   M    R +     +V  L AC+H                              
Sbjct: 215 CLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKTSLI 274

Query: 385 -----AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE-- 437
                +G +E G   F++M +       R  Y+ +I  L   G+ +EA+ +  +M  E  
Sbjct: 275 DMYVKSGSLEKGLCVFQNMAQ-----KNRYSYTVIITGLAIHGRGREALSVFSDMLEEGL 329

Query: 438 -PDAVTWRALLGAC 450
            PD V +  +L AC
Sbjct: 330 APDDVVYVGVLSAC 343


>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
 gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g52630
 gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/553 (37%), Positives = 342/553 (61%), Gaps = 6/553 (1%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H +V+  G      + N L+N + K  L  +++  F+  P+++  +W+++IS +   ++
Sbjct: 37  LHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQNEL 96

Query: 156 NDKALELLIFMLREGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSA 212
              +LE L  M+   +RP+     +  ++C  L    I R +HC  +K G+++DVFV S+
Sbjct: 97  PWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVFVGSS 156

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
           L+D+YAK GE+  A  +F+EMP R++V W+ ++ G+AQ  + +EAL L+K       A +
Sbjct: 157 LVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVN 216

Query: 273 QSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFS 330
             + +SV+  C    LLELG Q+H       +D    + ++L+ +Y KCG  E A  VF+
Sbjct: 217 DYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFN 276

Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390
            +  K++  W+ M+   AQ+ ++Q+ ++LF+ MK+S +KPN+IT + VL ACSHAG V++
Sbjct: 277 EVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDE 336

Query: 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
           G  +F  MK+   I+P  +HY+ ++D+LGRAG+LQEA+++I  MP +P    W ALL +C
Sbjct: 337 GRYYFDQMKE-SRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSC 395

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
            VH+NT+LA  AA K+  L P   G +I LSN YA   ++++ A+ RK +R RG  KE G
Sbjct: 396 TVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETG 455

Query: 511 CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKED 570
            SW+E   ++H F   +  H +  +I + L  L +++   GY  DT+YVL++++G++K  
Sbjct: 456 LSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQ 515

Query: 571 SIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYH 630
           +I+YHSE+LAI FGL++    + IR+ KNLR+CGDCH   K  +    + I++RD  R+H
Sbjct: 516 TIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFH 575

Query: 631 HFQDGNCSCGDYW 643
            F+DG CSC DYW
Sbjct: 576 RFEDGKCSCNDYW 588



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 173/337 (51%), Gaps = 26/337 (7%)

Query: 50  CY-QRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP 107
           C+ Q +LP  +++ +  M    +R D        K C      +  + VH   +  G++ 
Sbjct: 90  CFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDA 149

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           + F+ + L++M+ K   +  A+ +FD+MP+RNVV+W+ M+  Y     N++AL L    L
Sbjct: 150 DVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEAL 209

Query: 168 REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
            E +  N +++S+V+  C +  +L   RQ+H   IK  F+S  FV S+L+ +Y+K G   
Sbjct: 210 FENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPE 269

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
            A  VFNE+P ++L +WN+++  +AQ+S   + + L+KRMK +G   +  T  +VL AC+
Sbjct: 270 GAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACS 329

Query: 285 GLALLELGTQVHVHVLKYDHDLILNN----------ALLDMYCKCGSLEDAMSVFSRM-I 333
              L++ G        +Y  D +  +          +L+DM  + G L++A+ V + M I
Sbjct: 330 HAGLVDEG--------RYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPI 381

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
                 W  +++    +  ++  L  F + KV  + P
Sbjct: 382 DPTESVWGALLTSCTVHKNTE--LAAFAADKVFELGP 416



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 134/276 (48%), Gaps = 4/276 (1%)

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           QLH  ++K G      V + LI+ Y+K     ++   F + P +    W+SII  FAQN 
Sbjct: 36  QLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQNE 95

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNN 310
               +L   K+M       D   L S  ++C  L+  ++G  VH   +K  YD D+ + +
Sbjct: 96  LPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVFVGS 155

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           +L+DMY KCG +  A  +F  M Q++V++WS M+ G AQ G ++EAL LF+      +  
Sbjct: 156 SLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAV 215

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           N  +   V+  C+++  +E G      +      D      S ++ L  + G  + A ++
Sbjct: 216 NDYSFSSVISVCANSTLLELG-RQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQV 274

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
            +E+P +   + W A+L A   H +T   I   K++
Sbjct: 275 FNEVPVKNLGI-WNAMLKAYAQHSHTQKVIELFKRM 309


>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
 gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
          Length = 487

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/488 (42%), Positives = 305/488 (62%), Gaps = 11/488 (2%)

Query: 166 MLREGVRPNMFTYSAVLRACDS----LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
           M +EGV P+   + A L AC      L + + +H  +++ G ES+  V +AL+++Y K G
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAG 60

Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA---DQSTLTS 278
            L  A  VF  +  +DLV W +++  +++     EAL L++ M   G      D+S    
Sbjct: 61  CLDEATRVFRGLGRKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAF 120

Query: 279 VLRACTGLALLELGTQVHVHVLK--YDH-DLILNNALLDMYCKCGSLEDAMSVFSRMIQK 335
           +L+AC  L+    G   H  + +  YD  D +L   +++MY KCG+L  A  VF  M ++
Sbjct: 121 LLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSER 180

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
           D ++W+T+ISG A +G+S+E+L +F  M+    KP+ ++++ VL  CSHAG VE GW+ F
Sbjct: 181 DTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFF 240

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN 455
             + K +G++PG +HY CMIDLLGR+G L+ A  +I  MP++  A+ W   L ACKVH +
Sbjct: 241 LDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSD 300

Query: 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE 515
           T+    AA+K+L L+P  P  Y+ LSNIYA + +WD+V  VR  M+A G+ K+PG S IE
Sbjct: 301 TERGKRAAEKVLELEPV-PAAYVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSIE 359

Query: 516 VNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYH 575
           VN ++H F   D SHP+  +I   L+ L +++ G GY PDT  VL ++  EQKE  + +H
Sbjct: 360 VNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLLNVSEEQKERLLCFH 419

Query: 576 SEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDG 635
           SEKLAI FGL+S   G ++RI KNLR+CGDCHT AK  +++  + I +RD  R+HHFQDG
Sbjct: 420 SEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRFHHFQDG 479

Query: 636 NCSCGDYW 643
           +CSCGDYW
Sbjct: 480 HCSCGDYW 487



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 175/359 (48%), Gaps = 19/359 (5%)

Query: 65  MQCHGVRADSVTY-AELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123
           MQ  GV  D + + A L  C  A   +   KL+H+ VL  G E  T +   L+NM+ K  
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAG 60

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML---REGVRPNMFTYSA 180
            L+EA  +F  +  +++VSWT ++SAY    +  +AL+L   M     +G +P+   ++ 
Sbjct: 61  CLDEATRVFRGLGRKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAF 120

Query: 181 VLRACDSLIIL---RQLHCGIIKVGFE-SDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
           +L+AC +L      R  H  I + G++ SD  +   +I++Y K G LR A  VF+ M  R
Sbjct: 121 LLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSER 180

Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
           D V W +II G+A +   +E+L ++ RM++ G   D  +L  VL  C+   L+E G    
Sbjct: 181 DTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFF 240

Query: 297 VHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGY 352
           + + K    +        ++D+  + G LE A  +  RM  Q   ++W+  ++    +  
Sbjct: 241 LDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSD 300

Query: 353 SQEALKLFES-MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI--DPGR 408
           ++   +  E  +++  +   Y+++  +  A        D  +  +S  K  G+  DPGR
Sbjct: 301 TERGKRAAEKVLELEPVPAAYVSLSNIYAAAGEW----DQVDRVRSAMKAMGLQKDPGR 355



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 102/224 (45%), Gaps = 6/224 (2%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++L+  ++R    R+  +  + M      G + D   +A L++ C    A  E +L H  
Sbjct: 81  TALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAFLLQACATLSAAAEGRLAHRR 140

Query: 100 VLSGGFEPETFLVNI-LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158
           +   G++    ++ + ++NM+ K   L  A  +FD M ER+ V+WTT+IS Y     +++
Sbjct: 141 IQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEE 200

Query: 159 ALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIK-VGFESDVFVRSALI 214
           +L +   M ++G +P+  +   VL  C    ++ Q       I K  G E        +I
Sbjct: 201 SLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMI 260

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVV-WNSIIGGFAQNSDVDEA 257
           D+  + G+L  AE +   MP +   + W   +     +SD +  
Sbjct: 261 DLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSDTERG 304


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/600 (36%), Positives = 353/600 (58%), Gaps = 14/600 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGG-FEPETFLVNILL 116
           A++ ++ M   GVR D VT+A  +  C     ++  + +H +V+        +F+ + L+
Sbjct: 103 AVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALV 162

Query: 117 NMHVKFSLLEEAQVLFDQMPE--RNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRP 173
           +M+     + +A+ +FD +P+  + +  W  MI  Y  A M+++AL L   M  E G  P
Sbjct: 163 DMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVP 222

Query: 174 NMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
              T ++VL AC   ++      +H  ++K G   + FV++AL+D+YA+LG+   A  +F
Sbjct: 223 CETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIF 282

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR---AGFAADQSTLTSVLRACTGLA 287
             +   D+V WN++I G      V +A  L + M++    G   +  TL ++L  C  LA
Sbjct: 283 AMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILA 342

Query: 288 LLELGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
               G ++H + +++  D D+ + +AL+DMY KCG L  + +VF R+ +++ I+W+ +I 
Sbjct: 343 APARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIM 402

Query: 346 GLAQNGYSQEALKLFESMKVS-RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI 404
               +G   EA  LF+ M  S   +PN +T +  L ACSH+G V+ G   F +M++ +G+
Sbjct: 403 AYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGV 462

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY-EPDAVTWRALLGACKVHRNTDLAICAA 463
           +P  +  +C++D+LGRAG+L EA  ++  M   E     W  +LGAC++HRN  L   A 
Sbjct: 463 EPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAG 522

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
           +++L L+P++   Y+LL NIY+ + +W   AEVR  MR RG+ KEPGCSWIEV+  IH F
Sbjct: 523 ERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRF 582

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
              +S+HP  ++++ H++ L  ++V  GY PDT+ VL D++   K   ++ HSEKLAI F
Sbjct: 583 MAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAF 642

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           GL+    G TIR+ KNLR+C DCH  AK  +KM  + IV+RD  R+HHF++G CSCGDYW
Sbjct: 643 GLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 702



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 116/373 (31%), Positives = 194/373 (52%), Gaps = 24/373 (6%)

Query: 95  LVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF-DQMPER-NVVSWTTMISAYCD 152
           L+H H        + F  N LL+M+ +  L+ +AQ LF    P R +VV+W TM+S    
Sbjct: 45  LLHGH--------QRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQ 96

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVG-FESDVF 208
           + M D+A++ L  M+  GVRP+  T+++ L AC  L +L   R++H  +IK     ++ F
Sbjct: 97  SGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSF 156

Query: 209 VRSALIDIYAKLGELRNAECVFNEMP--TRDLVVWNSIIGGFAQNSDVDEALNLYKRMK- 265
           V SAL+D+YA   ++  A  VF+ +P   + L +WN++I G+AQ    +EAL L+ RM+ 
Sbjct: 157 VASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEA 216

Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLE 323
            AGF   ++T+ SVL AC           VH +V+K     +  + NAL+DMY + G  +
Sbjct: 217 EAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTD 276

Query: 324 DAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV---SRIKPNYITIVGVLF 380
            A  +F+ +   DV+SW+T+I+G    G+  +A +L   M+      + PN IT++ +L 
Sbjct: 277 VARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLP 336

Query: 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
            C+       G          + +D      S ++D+  + G L  +  +   +P   + 
Sbjct: 337 GCAILAAPARG-KEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRR-NT 394

Query: 441 VTWRALLGACKVH 453
           +TW  L+ A  +H
Sbjct: 395 ITWNVLIMAYGMH 407



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 154/323 (47%), Gaps = 21/323 (6%)

Query: 166 MLREGVRPNMFTYSAVLRACDSLI-------ILRQLHCGIIKVGF--ESDVFVRSALIDI 216
           ML  G     FT  +VLRA   L        + R+ H   +K G       F  +AL+ +
Sbjct: 1   MLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSM 60

Query: 217 YAKLGELRNAECVF-NEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           YA+LG + +A+ +F    P R D+V WN+++    Q+   DEA+     M   G   D  
Sbjct: 61  YARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGV 120

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKYDH---DLILNNALLDMYCKCGSLEDAMSVFSR 331
           T  S L AC+ L LL++G ++H +V+K D    +  + +AL+DMY     +  A  VF  
Sbjct: 121 TFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDM 180

Query: 332 MIQ--KDVISWSTMISGLAQNGYSQEALKLFESMKV-SRIKPNYITIVGVLFACSHA-GF 387
           +    K +  W+ MI G AQ G  +EAL+LF  M+  +   P   T+  VL AC+ +  F
Sbjct: 181 VPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAF 240

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
                 H   +K+  G+   R   + ++D+  R GK  +  + I  M   PD V+W  L+
Sbjct: 241 AGKEAVHGYVVKR--GMAGNRFVQNALMDMYARLGK-TDVARRIFAMVDLPDVVSWNTLI 297

Query: 448 GACKVHRNTDLAICAAKKILNLD 470
             C V  +   A   A+++  L+
Sbjct: 298 TGCVVQGHVADAFQLAREMQQLE 320


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/522 (40%), Positives = 329/522 (63%), Gaps = 10/522 (1%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF--MLREGV-RPNMFTYSAV 181
           ++ A+ LF Q+   N+ SW +MI   C          +++F  M+R G   PN FT + V
Sbjct: 109 IDYARKLFSQIQRPNIFSWNSMIRG-CSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFV 167

Query: 182 LRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
           L+AC  +  L   +Q+H  ++K GF S  FV +AL++ YAK  ++  A  VF+E+  R+L
Sbjct: 168 LKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNL 227

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           V W+++I G+A+   V+EAL L++ M++AG   D+ T+ SV+ AC     L+ G  VH +
Sbjct: 228 VAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAY 287

Query: 299 VLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           + K   + DL L+ AL++MY KCG +E A  VF  M  KD  +WS+MI GLA NG +++A
Sbjct: 288 INKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDA 347

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           L+ F  M+ +++KPN++T +GVL AC+H+G V +G  ++ SM +F GI P  E Y CM+D
Sbjct: 348 LEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEF-GIVPSMELYGCMVD 406

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476
           LL RA  +++A  L+  MP  P+ V WR LL  CK  +N D +   A+++L L+P +   
Sbjct: 407 LLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAEN 466

Query: 477 YILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKI 536
           YILLSN+YA+  +W+++++VRK M+  GI   PGCS IEV+  +H F + D SHP+  ++
Sbjct: 467 YILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEV 526

Query: 537 NKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRI 596
            + L+ + +++  VG+ P  + VL ++  E+KE+++  HSE+LAI +GL+       IRI
Sbjct: 527 REILRDISKRVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRI 586

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCS 638
            KNLR+CGDCH   K+ +    + I++RD +R+H F +G+CS
Sbjct: 587 VKNLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKFVNGSCS 628



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 151/280 (53%), Gaps = 6/280 (2%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           ++ T A ++K C    A+EE + VH +VL  GF    F+   L+N + K   +  A  +F
Sbjct: 160 NTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVF 219

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLI 189
           D++ +RN+V+W+TMIS Y    + ++AL L   M + GV P+  T  +V+ AC    +L 
Sbjct: 220 DEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALD 279

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
             + +H  I K   E+D+ + +AL+++YAK G +  A+ VF+ MP +D   W+S+I G A
Sbjct: 280 TGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLA 339

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLI 307
            N   ++AL  + RM+ A    +  T   VL AC    L+  G +    +L++     + 
Sbjct: 340 INGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSME 399

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
           L   ++D+ C+   +EDA ++   M I  + + W T++ G
Sbjct: 400 LYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVG 439



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 153/276 (55%), Gaps = 12/276 (4%)

Query: 181 VLRACDSLIILRQLHCGIIK--VGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTR 236
           ++R C S+ +LRQ+H  ++   +   S  F    +I   A    G++  A  +F+++   
Sbjct: 63  LIRKCRSMRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRP 122

Query: 237 DLVVWNSIIGGFAQN-SDVDEALNLYKRMKRAGFAADQS-TLTSVLRACTGLALLELGTQ 294
           ++  WNS+I G +Q+ +   E + L+++M R G+    + T+  VL+AC+ ++ LE G Q
Sbjct: 123 NIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQ 182

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           VH +VLK  +     +  AL++ Y KC  +  A  VF  +  +++++WSTMISG A+ G 
Sbjct: 183 VHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGL 242

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHY 411
             EAL LF  M+ + + P+ +T+V V+ AC+ +G ++ G W H    K+   I+   E  
Sbjct: 243 VNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQL--IETDLELS 300

Query: 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           + ++++  + G ++ A ++   MP + D   W +++
Sbjct: 301 TALVNMYAKCGCIERAKEVFDAMPVK-DTKAWSSMI 335



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 104/211 (49%), Gaps = 4/211 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     MQ  GV  D VT   +I  C A  A++  K VH ++     E +  L   L+N
Sbjct: 246 ALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVN 305

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +E A+ +FD MP ++  +W++MI       + + ALE    M    V+PN  T
Sbjct: 306 MYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVT 365

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +  VL AC    ++   R+    +++ G    + +   ++D+  +   + +A  +   MP
Sbjct: 366 FIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMP 425

Query: 235 -TRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
            + + V+W +++ G  ++ ++D++  + +R+
Sbjct: 426 ISPNPVIWRTLLVGCKKSKNLDKSEVVAQRL 456



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 50/216 (23%)

Query: 279 VLRACTGLALLELGTQVHVHVLKYDHDL---------ILNNALLDMYCKCGSLEDAMSVF 329
           ++R C  + +L    Q+H  +L +   +         I+    L  Y   G ++ A  +F
Sbjct: 63  LIRKCRSMRVLR---QIHARLLTHAMPISSISFGLCKIIGFCALSPY---GDIDYARKLF 116

Query: 330 SRMIQKDVISWSTMISGLAQNGY-SQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGF 387
           S++ + ++ SW++MI G +Q+   S+E + LF  M +     PN  T+  VL ACS    
Sbjct: 117 SQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSA 176

Query: 388 VEDGWN-HFKSMKKFYGIDPGRE-----------------------------HYSCMIDL 417
           +E+G   H   +K  +G  P  E                              +S MI  
Sbjct: 177 LEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISG 236

Query: 418 LGRAGKLQEAVKLIHEMPYE---PDAVTWRALLGAC 450
             R G + EA+ L  +M      PD VT  +++ AC
Sbjct: 237 YARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISAC 272


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/639 (35%), Positives = 352/639 (55%), Gaps = 13/639 (2%)

Query: 10  KWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHG 69
           KW         F L     V S NT+    S+  D    F    DL R M A        
Sbjct: 323 KWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTF----DLLRQMLA----GSED 374

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V+AD VT    +  C     +   K +H + L   F  +  L N  +  + K   L  AQ
Sbjct: 375 VKADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQ 434

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            +F  +  + + SW  +I  Y  +     +L+  + M   G+ P+ FT  ++L AC  L 
Sbjct: 435 RVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLK 494

Query: 190 ILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            LR   ++H  II+   E D+FV  +++ +Y   GEL   + +F+ M    LV WN++I 
Sbjct: 495 SLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVIT 554

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DH 304
           G  QN   + AL L+++M   G      ++ +V  AC+ L  L LG + H + LK+  + 
Sbjct: 555 GHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLED 614

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           +  +  +++DMY K G++  +  VF+ + +K   SW+ MI G   +G ++EA+KLFE M+
Sbjct: 615 NAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQ 674

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
            +   P+ +T +GVL AC+H+G + +G  +   MK  +G+ P  +HY+C+ID+LGRAG+L
Sbjct: 675 RTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQL 734

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484
             A+++  EM  EPD   W +LL  C++H+N ++    A K+  L+P+ P  Y+LLSN+Y
Sbjct: 735 DNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLY 794

Query: 485 ANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLI 544
           A   KWD+V +VR+ M+   + K+ GCSWIE+N ++ +F V +      ++I      L 
Sbjct: 795 AGLGKWDDVRQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILE 854

Query: 545 QKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICG 604
            K+  +GY PDT+ V  DL  E+K + ++ HSEKLAI +GL+  ++G T+R+ KNLRIC 
Sbjct: 855 MKIWKMGYRPDTSSVQHDLSEEEKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICV 914

Query: 605 DCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           DCH  AKL +K+  + IV+RD  R+HHF  G CSCGDYW
Sbjct: 915 DCHNAAKLISKVMEREIVVRDNKRFHHFNKGFCSCGDYW 953



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 175/369 (47%), Gaps = 32/369 (8%)

Query: 33  NTITRNSSS---LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSV------TYAELIKC 83
           N I+ NS++    L   + FC   DL ++ + +         +  V          L++ 
Sbjct: 34  NAISSNSTNANHFLRRISNFCETGDLDKSFRVVQEFAGDDESSSDVFLLVREALGLLLQA 93

Query: 84  CLARHAVEEAKLVHNHVLSGG--FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVV 141
              R  +E  + +H H++SG      +  L   ++ M+      ++++  FD +  +N+ 
Sbjct: 94  SGKRKDIEMGRKIH-HLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLF 152

Query: 142 SWTTMISAYCDAKMNDKALELLIFML-REGVRPNMFTYSAVLRACDSLI---ILRQLHCG 197
            W  +IS+Y   ++  + LE+ I M+ +  + P+ FT+  V++AC  +    I   +H  
Sbjct: 153 QWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGL 212

Query: 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEA 257
           ++K G   D+FV +AL+  Y   G + +A  +F+ MP R+LV WNS+I  F+ N D    
Sbjct: 213 VVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGD---- 268

Query: 258 LNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDM 315
                      F  D +T+ +VL  C     + +G  VH   +K   D +L++NNAL+DM
Sbjct: 269 --------DGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDM 320

Query: 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR--IKPNYI 373
           Y K G + D+  +F     K+V+SW+TM+ G +  G       L   M      +K + +
Sbjct: 321 YSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEV 380

Query: 374 TIVGVLFAC 382
           TI+  +  C
Sbjct: 381 TILNAVPVC 389


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/530 (39%), Positives = 324/530 (61%), Gaps = 23/530 (4%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           ++EA+ +FD+M ER+V++WTTM++ Y      D A ++   M  +       +++++L  
Sbjct: 188 VDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK----TEVSWTSML-- 241

Query: 185 CDSLIILRQLHCGIIKVGFE-------SDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
                 +  +  G I+   E         V   +A+I    + GE+  A  VF+ M  R+
Sbjct: 242 ------MGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERN 295

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
              W ++I    +N    EAL+L+  M++ G      TL S+L  C  LA L  G QVH 
Sbjct: 296 DASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHA 355

Query: 298 HVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
            +++  +D D+ + + L+ MY KCG L  +  +F R   KD+I W+++ISG A +G  +E
Sbjct: 356 QLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEE 415

Query: 356 ALKLFESMKVS-RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414
           ALK+F  M +S   KPN +T V  L ACS+AG VE+G   ++SM+  +G+ P   HY+CM
Sbjct: 416 ALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACM 475

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474
           +D+LGRAG+  EA+++I  M  EPDA  W +LLGAC+ H   D+A   AKK++ ++P++ 
Sbjct: 476 VDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENS 535

Query: 475 GTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD-SSHPQI 533
           GTYILLSN+YA+  +W +VAE+RK M+ R + K PGCSW EV  ++HAF     +SHP+ 
Sbjct: 536 GTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQ 595

Query: 534 DKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT 593
           + I K L  L   L   GY PD +Y L D++ E+K +S++YHSE+LA+ + L+ L++G  
Sbjct: 596 ESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIP 655

Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           IR+ KNLR+C DCHT  K+ +K++ + I++RD  R+HHF++G CSC DYW
Sbjct: 656 IRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 175/380 (46%), Gaps = 61/380 (16%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N L++ ++K   ++EA+ +FD MPERNVVSWT ++  Y      D A E L + + E   
Sbjct: 83  NGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVA-ESLFWKMPE--- 138

Query: 173 PNMFTYSAVL-------RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225
            N  +++ +L       R  D+        C + ++  + D   R+++I    K G +  
Sbjct: 139 KNKVSWTVMLIGFLQDGRIDDA--------CKLYEMIPDKDNIARTSMIHGLCKEGRVDE 190

Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
           A  +F+EM  R ++ W +++ G+ QN+ VD+A  ++  M        + + TS+L     
Sbjct: 191 AREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPE----KTEVSWTSMLMGYVQ 246

Query: 286 LALLELGTQV-HVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
              +E   ++  V  +K    +I  NA++    + G +  A  VF  M +++  SW T+I
Sbjct: 247 NGRIEDAEELFEVMPVK---PVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVI 303

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYG 403
               +NG+  EAL LF  M+   ++P + T++ +L  C+    +  G   H + ++  + 
Sbjct: 304 KIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFD 363

Query: 404 ID---------------------------PGRE--HYSCMIDLLGRAGKLQEAVKLIHEM 434
           +D                           P ++   ++ +I      G  +EA+K+  EM
Sbjct: 364 VDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEM 423

Query: 435 PY----EPDAVTWRALLGAC 450
           P     +P+ VT+ A L AC
Sbjct: 424 PLSGSTKPNEVTFVATLSAC 443



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 156/373 (41%), Gaps = 61/373 (16%)

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
           +++++     S    P T   N+ +    +   + EA+ LFD    +++ SW +M++ Y 
Sbjct: 2   KSQILLRRTYSTTIPPPT--ANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYF 59

Query: 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRS 211
              M   A +L   M                                     + ++   +
Sbjct: 60  ANLMPRDARKLFDEMP------------------------------------DRNIISWN 83

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271
            L+  Y K GE+  A  VF+ MP R++V W +++ G+  N  VD A +L+ +M      +
Sbjct: 84  GLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVS 143

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
               L   L+         +     ++ +  D D I   +++   CK G +++A  +F  
Sbjct: 144 WTVMLIGFLQDG------RIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDE 197

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           M ++ VI+W+TM++G  QN    +A K+F+ M     +   ++   +L      G +ED 
Sbjct: 198 MSERSVITWTTMVTGYGQNNRVDDARKIFDVMP----EKTEVSWTSMLMGYVQNGRIEDA 253

Query: 392 WNHFKSMKKFYGIDPGREHYSC--MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
              F+ M       P +   +C  MI  LG+ G++ +A ++   M    DA +W+ ++  
Sbjct: 254 EELFEVM-------PVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDA-SWQTVI-- 303

Query: 450 CKVHRNTDLAICA 462
            K+H      + A
Sbjct: 304 -KIHERNGFELEA 315



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 119/269 (44%), Gaps = 45/269 (16%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  GVR    T   ++  C +  ++   K VH  ++   F+ + ++ ++L+ M++K   
Sbjct: 322 MQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGE 381

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLR 183
           L +++++FD+ P ++++ W ++IS Y    + ++AL++   M   G  +PN  T+ A L 
Sbjct: 382 LVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLS 441

Query: 184 ACDSLIILRQLHCGIIKVGF------ESDVFVR------SALIDIYAKLGELRNAECVFN 231
           AC         + G+++ G       ES   V+      + ++D+  + G    A  + +
Sbjct: 442 ACS--------YAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMID 493

Query: 232 EMPTR-DLVVWNSIIGGFAQNSDVDEA---------------------LNLYKRMKRAGF 269
            M    D  VW S++G    +S +D A                      N+Y    R   
Sbjct: 494 SMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWAD 553

Query: 270 AADQSTL--TSVLRACTGLALLELGTQVH 296
            A+   L  T ++R   G +  E+  +VH
Sbjct: 554 VAELRKLMKTRLVRKSPGCSWTEVENKVH 582



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 55/257 (21%)

Query: 218 AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT 277
           +++G++  A  +F+   ++ +  WNS++ G+  N    +A  L+  M             
Sbjct: 28  SRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMP------------ 75

Query: 278 SVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337
                                    D ++I  N L+  Y K G +++A  VF  M +++V
Sbjct: 76  -------------------------DRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNV 110

Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397
           +SW+ ++ G   NG    A  LF  M     + N ++   +L      GF++DG      
Sbjct: 111 VSWTALVKGYVHNGKVDVAESLFWKMP----EKNKVSWTVMLI-----GFLQDG--RIDD 159

Query: 398 MKKFYGIDPGREHY--SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRN 455
             K Y + P +++   + MI  L + G++ EA ++  EM  E   +TW  ++     +  
Sbjct: 160 ACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMS-ERSVITWTTMVTGYGQNNR 218

Query: 456 TDLAICAAKKILNLDPQ 472
            D     A+KI ++ P+
Sbjct: 219 VD----DARKIFDVMPE 231


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/596 (36%), Positives = 349/596 (58%), Gaps = 16/596 (2%)

Query: 54  DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
           D+  A+K    M    V    V++  ++  C     V++A+ +   +       +T   N
Sbjct: 112 DMNTAVKLFDEMPERSV----VSWTAMVNGCFRSGKVDQAERLFYQMPV----KDTAAWN 163

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            +++ +++F  +++A  LF QMP +NV+SWTTMI      + + +AL+L   MLR  ++ 
Sbjct: 164 SMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKS 223

Query: 174 NMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
               ++ V+ AC +        Q+H  IIK+GF  + +V ++LI  YA    + ++  VF
Sbjct: 224 TSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVF 283

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
           +E     + VW +++ G++ N   ++AL+++  M R     +QST  S L +C+ L  L+
Sbjct: 284 DEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLD 343

Query: 291 LGTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
            G ++H   +K   + D  + N+L+ MY   G++ DA+SVF ++ +K ++SW+++I G A
Sbjct: 344 WGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCA 403

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG-IDPG 407
           Q+G  + A  +F  M     +P+ IT  G+L ACSH GF+E G   F  M      ID  
Sbjct: 404 QHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRK 463

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
            +HY+CM+D+LGR GKL+EA +LI  M  +P+ + W ALL AC++H + D    AA  I 
Sbjct: 464 IQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIF 523

Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVAD 527
           NLD +    Y+LLSNIYA++ +W  V+++R  M+  GI K+PG SW+ +  + H F   D
Sbjct: 524 NLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGD 583

Query: 528 SSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587
              P   +I + L+ L +KL  +GYAPD    L D+E EQKE+ + YHSE+LAI FGL++
Sbjct: 584 --QPHCSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLIN 641

Query: 588 LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             +G  + + KNLR+C DCHT  KL + +  + IV+RDPIR+HHF++G CSCGDYW
Sbjct: 642 TVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGDYW 697



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/434 (24%), Positives = 206/434 (47%), Gaps = 18/434 (4%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYA----ELIKCC-LARHAVEEAKLVHNHV 100
           ++R  +QR   RA    H +     R+ SVT      E++ C  L    ++EA+ V N V
Sbjct: 2   WSRAIFQRFRFRAFSISHVIHGKCYRSFSVTVEFQNREVLICNHLLSRRIDEAREVFNQV 61

Query: 101 LSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKAL 160
            S    P   L   ++  + + + L +A  LFD+MP R+VVSW +MIS   +    + A+
Sbjct: 62  PS----PHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAV 117

Query: 161 ELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKL 220
           +L   M    V     +++A++  C     + Q      ++  + D    ++++  Y + 
Sbjct: 118 KLFDEMPERSV----VSWTAMVNGCFRSGKVDQAERLFYQMPVK-DTAAWNSMVHGYLQF 172

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           G++ +A  +F +MP ++++ W ++I G  QN    EAL+L+K M R    +     T V+
Sbjct: 173 GKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVI 232

Query: 281 RACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
            AC       +G QVH  ++K  + ++  ++ +L+  Y  C  + D+  VF   + + V 
Sbjct: 233 TACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVA 292

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
            W+ ++SG + N   ++AL +F  M  + I PN  T    L +CS  G ++ G      +
Sbjct: 293 VWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWG-KEMHGV 351

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
               G++      + ++ +   +G + +AV +  ++ ++   V+W +++  C  H     
Sbjct: 352 AVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKI-FKKSIVSWNSIIVGCAQHGRGKW 410

Query: 459 AICAAKKILNLDPQ 472
           A     +++ L+ +
Sbjct: 411 AFVIFGQMIRLNKE 424


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/586 (38%), Positives = 342/586 (58%), Gaps = 22/586 (3%)

Query: 68  HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
           H    D+ T   +IK C     V+E K +H   L  GF  + F+   L+NM+ K   ++ 
Sbjct: 106 HEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDC 165

Query: 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV---LRA 184
           A+ +FD M +++VV W ++I  Y      D AL+L      E    + F+++ +   L  
Sbjct: 166 ARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLF----EEMPERDAFSWTVLVDGLSK 221

Query: 185 CDSLIILRQLHCGIIKVGFES----DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           C  +   R+L        F+     ++   +A+I+ Y K G+  +A  +F +MP  DLV 
Sbjct: 222 CGKVESARKL--------FDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVT 273

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           WN +I G+  N    +A+ ++  M + G     +TL SVL A +GLA+L  G  +H ++ 
Sbjct: 274 WNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYME 333

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K  ++ D IL  +L++MY KCG +E A++VF  + +K V  W+ +I GL  +G +  AL 
Sbjct: 334 KNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALA 393

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
           LF  M  + +KPN I  +GVL AC+HAG V+DG  +F  M   Y I+P  EHY C++D+L
Sbjct: 394 LFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDIL 453

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
            RAG L+EA   I  MP  P+ V W +LLG  + H   D+   AA++++ + P+  G YI
Sbjct: 454 CRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYI 513

Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
           LLSN+YA S  W++V+ VR+ M  RG  K+PGCS +E    +H F V D SHPQ  +I  
Sbjct: 514 LLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYA 573

Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGE-QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
            +  + +KL  VG+ PDT  VL  +EGE +KE  ++ HSE+LAI FGL+++  G  IRI 
Sbjct: 574 KMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIM 633

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLR+C DCH+  KL +K+ ++ I++RD  R+HHF++G+CSC DYW
Sbjct: 634 KNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 200/380 (52%), Gaps = 20/380 (5%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHV--KFSLLEEAQVLFDQMPERNVVSWTTM 146
           A +E + +H   L        F+ + LL ++   K + L  A+ +FD++  R+++ W T+
Sbjct: 25  APQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTI 84

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGF 203
           I  Y + + +   + L   ++ E + P+ FT   V++ C  L ++   +Q+H   +K+GF
Sbjct: 85  IKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGF 143

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
            SDVFV+ +L+++Y+K GE+  A  VF+ M  +D+V+WNS+I G+A+  ++D AL L++ 
Sbjct: 144 GSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEE 203

Query: 264 M-KRAGFAADQSTLTSVLRACTGL-ALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGS 321
           M +R  F+   + L   L  C  + +  +L  Q+         +L+  NA+++ Y K G 
Sbjct: 204 MPERDAFS--WTVLVDGLSKCGKVESARKLFDQMPC------RNLVSWNAMINGYMKSGD 255

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
            + A+ +F +M   D+++W+ MI+G   NG   +A+K+F  M     +P++ T+V VL A
Sbjct: 256 FDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSA 315

Query: 382 CSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
            S    +  G W H    K  + +D      + +I++  + G ++ A+ +   +  +   
Sbjct: 316 VSGLAVLGKGRWIHSYMEKNGFELDGILG--TSLIEMYAKCGCIESALTVFRAIQ-KKKV 372

Query: 441 VTWRALLGACKVHRNTDLAI 460
             W A++    +H   + A+
Sbjct: 373 GHWTAIIVGLGIHGMANHAL 392



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 21/211 (9%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+K    M   G R    T   ++        + + + +H+++   GFE +  L   L+ 
Sbjct: 290 AVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIE 349

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +E A  +F  + ++ V  WT +I       M + AL L + M + G++PN   
Sbjct: 350 MYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAII 409

Query: 178 YSAVLRACDSLIILRQLHCGIIKVG------------FESDVFVRSALIDIYAKLGELRN 225
           +  VL AC+        H G++  G             E  +     L+DI  + G L  
Sbjct: 410 FIGVLNACN--------HAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEE 461

Query: 226 AECVFNEMP-TRDLVVWNSIIGGFAQNSDVD 255
           A+     MP + + V+W S++GG   +  +D
Sbjct: 462 AKNTIENMPISPNKVIWMSLLGGSRNHGKID 492



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 45/244 (18%)

Query: 294 QVHVHVLK---YDHDLILNNALLDMYC--KCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
           Q+H   LK   ++H  + ++ LL +Y   K   L  A S+F R+ ++ +I W+T+I    
Sbjct: 31  QLHAFSLKTAIFNHPFV-SSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYV 89

Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYG---- 403
           +N +S + + LF  + V    P+  T+  V+  C+  G V++G   H  ++K  +G    
Sbjct: 90  ENQFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVF 148

Query: 404 --------------IDPGREHYSCMIDL-----------LGRAGKLQEAVKLIHEMPYEP 438
                         ID  R+ +  MID              R G++  A++L  EMP E 
Sbjct: 149 VQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMP-ER 207

Query: 439 DAVTWRALL-GACKVHRNTDLAICAAKKILNLDP-QDPGTYILLSNIYANSQKWDEVAEV 496
           DA +W  L+ G  K  +     + +A+K+ +  P ++  ++  + N Y  S  +D   E+
Sbjct: 208 DAFSWTVLVDGLSKCGK-----VESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALEL 262

Query: 497 RKTM 500
              M
Sbjct: 263 FYQM 266


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/636 (36%), Positives = 345/636 (54%), Gaps = 49/636 (7%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           ++M     M   G++ D+V   +++         ++A  +H +V+  GF    F+   L+
Sbjct: 321 KSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLI 380

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFM---------- 166
            ++ K   L +A  LF  M  R+VV W++MI+AY       +ALE+   M          
Sbjct: 381 ELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGITSC 440

Query: 167 ----LREGVRPNMFTYSAVL--------RACDSLIILRQL------------------HC 196
               ++  V+P +   S  L        +A       R L                    
Sbjct: 441 YQISMQPQVQPPLAITSCTLATHIPWKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKS 500

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
            I   G + D  + +    +Y     +  A  VF ++P     +WN +I GFA +     
Sbjct: 501 NIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLS 560

Query: 257 ALNLYKRMKRAGFAADQS-------TLTSVLRACTGLALLELGTQVHVHVLK--YDHDLI 307
           +L LY +M   G   D S       ++ SVL AC  L  L  G   H +V++  ++ D++
Sbjct: 561 SLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDIL 620

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           +  A++DMY KCGSL+ A  +F     KD++ WS MI+    +G+ ++A+ LF+ M  + 
Sbjct: 621 VATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAG 680

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           ++P+++T   VL ACSH+G +E+G  +F+ M + + I     +Y+CM+DLLGRAG+L EA
Sbjct: 681 VRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEA 740

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487
           V LI  MP EPDA  W +LLGAC++H N DLA   A  + +LDP   G ++LLSNIYA  
Sbjct: 741 VDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAK 800

Query: 488 QKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL 547
            +W+EV +VRK M  RG  K  G S +E + Q+H F V D SHPQ +K+   L+ L   +
Sbjct: 801 SRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPM 860

Query: 548 VGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCH 607
             +GY P T++VL D+E E KE ++ YHSE+LAI FGL++ + G T+RI KNLRICGDCH
Sbjct: 861 KHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCH 920

Query: 608 TFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
              KL +K+ N+ I++RD  R+H F+DG CSCGDYW
Sbjct: 921 NAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/384 (32%), Positives = 191/384 (49%), Gaps = 58/384 (15%)

Query: 79  ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
           +L + C    +V +   +H+ V   G   +TF    L +++ K + L+ A+ +FD+ P  
Sbjct: 9   DLFQACNNGRSVSQ---LHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHP 65

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFML-REGVRPNMFTYSAVLRACDSLIILRQLHCG 197
           NV  W + + +YC  K  ++ L L   M+   G  P+ FT    L+AC     LR L  G
Sbjct: 66  NVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAG---LRMLELG 122

Query: 198 IIKVGFE-------SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
            +  GF        SD+FV SAL+++Y+K G++  A  VF E    D V+W S++ G+ Q
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNN 310
           N+D +EAL L+ +M              V+  C                  +D DL L N
Sbjct: 183 NNDPEEALALFSQM--------------VMMDC------------------FDGDLPLVN 210

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           +LL++Y K G  + A ++FS+M +KDVISWSTMI+  A N  + EAL LF  M   R +P
Sbjct: 211 SLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEP 270

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA--GKLQEAV 428
           N +T+V  L AC+ +  +E+G       KK + I   ++  S +  L G A  G   +++
Sbjct: 271 NSVTVVSALQACAVSRNLEEG-------KKIHKIAVWKDVVSWVALLSGYAQNGMAYKSM 323

Query: 429 KLIHEM---PYEPDAVTWRALLGA 449
            +   M     +PDAV    +L A
Sbjct: 324 GVFRNMLSDGIQPDAVAVVKILAA 347



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 164/337 (48%), Gaps = 18/337 (5%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           + +AC++   + QLH  + K G   D F  + L  +YAK   L+ A  VF+E P  ++ +
Sbjct: 10  LFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHL 69

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMK-RAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
           WNS +  + +    +E L L+  M   AG A D  T+   L+AC GL +LELG  +H   
Sbjct: 70  WNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFA 129

Query: 300 LKYDH---DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
            K D    D+ + +AL+++Y KCG + +A+ VF    + D + W++M++G  QN   +EA
Sbjct: 130 KKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEA 189

Query: 357 LKLFESMKVSRIKPNYITIVGVLFAC-SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           L LF  M +       + +V  L    +  G  +   N F  M +   I      +S MI
Sbjct: 190 LALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVIS-----WSTMI 244

Query: 416 DLLGRAGKLQEAVKLIHEM---PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP- 471
                     EA+ L HEM    +EP++VT  + L AC V RN +      KKI  +   
Sbjct: 245 ACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLE----EGKKIHKIAVW 300

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
           +D  +++ L + YA +    +   V + M + GI  +
Sbjct: 301 KDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPD 337



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 164/330 (49%), Gaps = 46/330 (13%)

Query: 39  SSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEA-KLVH 97
            S+L++ +++ C Q  +  A+K     Q    R D+V +  ++      +  EEA  L  
Sbjct: 142 GSALVELYSK-CGQ--MGEALKVFEEFQ----RPDTVLWTSMVTGYQQNNDPEEALALFS 194

Query: 98  NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND 157
             V+   F+ +  LVN LLN++ K    + A  LF +MPE++V+SW+TMI+ Y + +  +
Sbjct: 195 QMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAAN 254

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCG--IIKVGFESDVFVRSALID 215
           +AL L   M+ +   PN  T  + L+AC    + R L  G  I K+    DV        
Sbjct: 255 EALNLFHEMIEKRFEPNSVTVVSALQAC---AVSRNLEEGKKIHKIAVWKDV-------- 303

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
                                  V W +++ G+AQN    +++ +++ M   G   D   
Sbjct: 304 -----------------------VSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVA 340

Query: 276 LTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
           +  +L A + L + +    +H +V++  ++ ++ +  +L+++Y KCGSL DA+ +F  MI
Sbjct: 341 VVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMI 400

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESM 363
            +DV+ WS+MI+    +G   EAL++F+ M
Sbjct: 401 VRDVVIWSSMIAAYGIHGRGGEALEIFDQM 430


>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
 gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
 gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/567 (37%), Positives = 335/567 (59%), Gaps = 12/567 (2%)

Query: 88  HAVEEAKLVHNHVLSGGFEPETFLVNILLN---MHVKFSLLEEAQVLFDQM-PERNVVSW 143
           +++++ + +H+HV+  G +    + N LL    + V  SL   AQ+LFD    + +   W
Sbjct: 16  NSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSL-SHAQLLFDHFDSDPSTSDW 74

Query: 144 TTMISAYCDAKMNDKALELLIFMLREGV-RPNMFTYSAVLRACD---SLIILRQLHCGII 199
             +I  + ++     ++     ML   V RP++FT++  L++C+   S+    ++H  +I
Sbjct: 75  NYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSVI 134

Query: 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN 259
           + GF  D  V ++L+  Y+  G +  A  VF+EMP RDLV WN +I  F+     ++AL+
Sbjct: 135 RSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQALS 194

Query: 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYC 317
           +YKRM   G   D  TL ++L +C  ++ L +G  +H     ++ +  + ++NAL+DMY 
Sbjct: 195 MYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYA 254

Query: 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377
           KCGSLE+A+ VF+ M ++DV++W++MI G   +G+  EA+  F  M  S ++PN IT +G
Sbjct: 255 KCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLG 314

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           +L  CSH G V++G  HF+ M   + + P  +HY CM+DL GRAG+L+ ++++I+     
Sbjct: 315 LLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSCH 374

Query: 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497
            D V WR LLG+CK+HRN +L   A KK++ L+  + G Y+L+++IY+ +      A +R
Sbjct: 375 EDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASMR 434

Query: 498 KTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAP-DT 556
           K +R+  +   PG SWIE+  Q+H F V D  HP+   I   L  +I + +  GY P D+
Sbjct: 435 KLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPEDS 494

Query: 557 NYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKM 616
           N     L       +   HSEKLAI +GLM  T G T+RI KNLR+C DCH+F K  +K 
Sbjct: 495 NRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKA 554

Query: 617 ENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            N+ I++RD +R+HHF DG CSC DYW
Sbjct: 555 FNREIIVRDRVRFHHFADGICSCNDYW 581



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 148/285 (51%), Gaps = 15/285 (5%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           R D  T+   +K C    ++ +   +H  V+  GF  +  +   L+  +     +E A  
Sbjct: 104 RPDLFTFNFALKSCERIKSIPKCLEIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASK 163

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL-- 188
           +FD+MP R++VSW  MI  +    ++++AL +   M  EGV  + +T  A+L +C  +  
Sbjct: 164 VFDEMPVRDLVSWNVMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSA 223

Query: 189 ----IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
               ++L ++ C I     ES VFV +ALID+YAK G L NA  VFN M  RD++ WNS+
Sbjct: 224 LNMGVMLHRIACDI---RCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSM 280

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304
           I G+  +    EA++ +++M  +G   +  T   +L  C+   L++ G + H  ++    
Sbjct: 281 IIGYGVHGHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGVE-HFEIMSSQF 339

Query: 305 DLILN----NALLDMYCKCGSLEDAMS-VFSRMIQKDVISWSTMI 344
            L  N      ++D+Y + G LE+++  +++    +D + W T++
Sbjct: 340 HLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSCHEDPVLWRTLL 384



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 142/299 (47%), Gaps = 20/299 (6%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRDL 238
           +L+ C+S+  LR++H  +I  G +    + + L+   A    G L +A+ +F+   +   
Sbjct: 11  MLQGCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFDSDPS 70

Query: 239 VV-WNSIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLRACTGLALLELGTQVH 296
              WN +I GF+ +S    ++  Y RM  +  +  D  T    L++C  +  +    ++H
Sbjct: 71  TSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIH 130

Query: 297 VHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
             V++  +  D I+  +L+  Y   GS+E A  VF  M  +D++SW+ MI   +  G   
Sbjct: 131 GSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHN 190

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC- 413
           +AL +++ M    +  +  T+V +L +C+H   +  G      M      D   E  SC 
Sbjct: 191 QALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMG-----VMLHRIACDIRCE--SCV 243

Query: 414 -----MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
                +ID+  + G L+ A+ + + M  + D +TW +++    VH +   AI   +K++
Sbjct: 244 FVSNALIDMYAKCGSLENAIGVFNGMR-KRDVLTWNSMIIGYGVHGHGVEAISFFRKMV 301



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 121/281 (43%), Gaps = 46/281 (16%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           +A+     M   GV  DS T   L+  C    A+    ++H        E   F+ N L+
Sbjct: 191 QALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALI 250

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +M+ K   LE A  +F+ M +R+V++W +MI  Y       +A+     M+  GVRPN  
Sbjct: 251 DMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAI 310

Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRS------------ALIDIYAKLGELR 224
           T+  +L  C         H G++K G E    + S             ++D+Y + G+L 
Sbjct: 311 TFLGLLLGCS--------HQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLE 362

Query: 225 NA-ECVFNEMPTRDLVVWNSIIGG--FAQNSDVDEALNLYKRMKRAGF-AADQSTLTSV- 279
           N+ E ++      D V+W +++G     +N ++ E + + K ++   F A D   +TS+ 
Sbjct: 363 NSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGE-VAMKKLVQLEAFNAGDYVLMTSIY 421

Query: 280 --------------------LRACTGLALLELGTQVHVHVL 300
                               L+   G + +E+G QVH  V+
Sbjct: 422 SAANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVV 462


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/510 (39%), Positives = 312/510 (61%), Gaps = 11/510 (2%)

Query: 145 TMISAYCDAKMND---KALELLIFMLREGVRPNMFTYSAVLRACDSLI----ILRQLHCG 197
           T+I A+  + ++    +A      MLR  V PN FT+  +L+AC +L     +  Q H  
Sbjct: 93  TLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAA 152

Query: 198 IIKVGFESDVFVRSALIDIYAKLGE--LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
            +K GF +D +V + LI +Y+  G   L +A  VF+ MP    V W+++IGG+ +     
Sbjct: 153 ALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSS 212

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
           +A++L++ M+  G  AD+ T+  VL A T L  LEL   V   V +      + L NAL+
Sbjct: 213 DAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALI 272

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           D   KCG ++ A++VF  M Q+ V+SW+++I  LA  G  +EA+++FE MKV+ + P+ +
Sbjct: 273 DTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDV 332

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
             +GVL ACSHAG V++G  +F +MK  YGI+P  EHY CM+D+ GRAG ++ A++ +  
Sbjct: 333 AFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRT 392

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
           MP +P+ V WR+L+ AC+ H   +L     + +L+  P     YI+LSN++A +Q+W E 
Sbjct: 393 MPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEK 452

Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYA 553
           +E+R+ M  RGI K PGCS +E++ ++H F   D SHPQ   I + ++ + ++L  VG+ 
Sbjct: 453 SEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHI 512

Query: 554 PDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLT 613
             T+ VL DL+ E KE ++Q+HSEKLAI F L+    G  +R+ KNLR+C DCH   K  
Sbjct: 513 AATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCI 572

Query: 614 AKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +++  + IV+RD  R+H F+DG+CSC D+W
Sbjct: 573 SQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 156/340 (45%), Gaps = 22/340 (6%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL-VHNHVLSGGFEPETFLVNIL 115
           RA      M    V  +  T+  L+K C A     +  L  H   L  GF  + ++ N L
Sbjct: 109 RAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTL 168

Query: 116 LNMHVKFS--LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
           ++M+  F    L +A+ +FD+MP+ + V+W+ MI  Y    ++  A++L   M   GV+ 
Sbjct: 169 IHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQA 228

Query: 174 NMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +  T   VL A   L  L   R +   + + G    V + +ALID  AK G++  A  VF
Sbjct: 229 DEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVF 288

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
             M  R +V W S+I   A      EA+ +++ MK AG   D      VL AC+   +++
Sbjct: 289 EGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVD 348

Query: 291 LGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMIS 345
            G   +   +K ++ +         ++DM+ + G +E AM     M IQ + + W +++S
Sbjct: 349 EGCG-YFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVS 407

Query: 346 GLAQNGYSQEALKLFESMKVSRI------KPNYITIVGVL 379
               +G     L+L ES+  S +      + NYI +  V 
Sbjct: 408 ACRAHGR----LELGESITRSLLHEYPAHEANYIMLSNVF 443


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/510 (39%), Positives = 311/510 (60%), Gaps = 11/510 (2%)

Query: 145 TMISAYCDAKMND---KALELLIFMLREGVRPNMFTYSAVLRACDSLI----ILRQLHCG 197
           T+I A+  + ++    +A      MLR  V PN FT+  +L+AC +L     +  Q H  
Sbjct: 93  TLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAA 152

Query: 198 IIKVGFESDVFVRSALIDIYAKLGE--LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
            +K GF +D +V + LI +Y+  G   L +A  VF+ MP    V W+++IGG+ +     
Sbjct: 153 ALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSS 212

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
           +A+ L++ M+  G  AD+ T+  VL A T L  LEL   V   V +      + L NAL+
Sbjct: 213 DAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALI 272

Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
           D   KCG ++ A++VF  M Q+ V+SW+++I  LA  G  +EA+++FE MKV+ + P+ +
Sbjct: 273 DTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDV 332

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
             +GVL ACSHAG V++G  +F +MK  YGI+P  EHY CM+D+ GRAG ++ A++ +  
Sbjct: 333 AFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRT 392

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
           MP +P+ V WR+L+ AC+ H   +L     + +L+  P     YI+LSN++A +Q+W E 
Sbjct: 393 MPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEK 452

Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYA 553
           +E+R+ M  RGI K PGCS +E++ ++H F   D SHPQ   I + ++ + ++L  VG+ 
Sbjct: 453 SEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHI 512

Query: 554 PDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLT 613
             T+ VL DL+ E KE ++Q+HSEKLAI F L+    G  +R+ KNLR+C DCH   K  
Sbjct: 513 AATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCI 572

Query: 614 AKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +++  + IV+RD  R+H F+DG+CSC D+W
Sbjct: 573 SQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 156/340 (45%), Gaps = 22/340 (6%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL-VHNHVLSGGFEPETFLVNIL 115
           RA      M    V  +  T+  L+K C A     +  L  H   L  GF  + ++ N L
Sbjct: 109 RAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTL 168

Query: 116 LNMHVKFS--LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
           ++M+  F    L +A+ +FD+MP+ + V+W+ MI  Y    ++  A+EL   M   GV+ 
Sbjct: 169 IHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQA 228

Query: 174 NMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           +  T   VL A   L  L   R +   + + G    V + +ALID  AK G++  A  VF
Sbjct: 229 DEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVF 288

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
             M  R +V W S+I   A      EA+ +++ MK AG   D      VL AC+   +++
Sbjct: 289 EGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVD 348

Query: 291 LGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMIS 345
            G   +   +K ++ +         ++DM+ + G +E AM     M IQ + + W +++S
Sbjct: 349 EGCG-YFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVS 407

Query: 346 GLAQNGYSQEALKLFESMKVSRI------KPNYITIVGVL 379
               +G     L+L ES+  S +      + NYI +  V 
Sbjct: 408 ACRAHGR----LELGESITRSLLHEYPAHEANYIMLSNVF 443


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/556 (38%), Positives = 343/556 (61%), Gaps = 10/556 (1%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           VH HV+  G+    FL+  LLN+      +   + +F  +P  +   +T++I +   +K 
Sbjct: 31  VHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRS--TSKF 88

Query: 156 NDKALELLIF---MLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFV 209
           ++ ++  L F   M+   V P+ +T+++V+++C  L+ LR    +H  ++  GF SDV+V
Sbjct: 89  HNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYV 148

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
           ++AL+  Y K G L NA  VF++M  R +V WNS+I G+ QN    EA+ L+ RMK  G 
Sbjct: 149 QTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGV 208

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMS 327
             + +T  SVL AC  L    LG  VH + +    D +++L  +L++MY +CG++  A  
Sbjct: 209 EPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKARE 268

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           VF  M +++V++W+ MISG   NGY  +A++LF  M+ + + PN IT V VL AC+HAG 
Sbjct: 269 VFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGL 328

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           V +G   F+SM++ Y + P  EH+ C++D+LGRAG L EA   I E+  EP    W A+L
Sbjct: 329 VNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAML 388

Query: 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507
           GACK+H+N  L    A+  L  +P +P  Y++LSNIYA + + D+V  VR  M  + + K
Sbjct: 389 GACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMIRKCLKK 448

Query: 508 EPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQ 567
           + G S I+++++ + F++ D SH + ++I  +L  L++K    GY   ++ V+ +LE E+
Sbjct: 449 QVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQLMRKCREAGYVTVSDSVMHELEEEE 508

Query: 568 KEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPI 627
           +E ++ YHSEKLAI FGL+  ++G  IRI KNLR+C DCH+  K  + + N+ I++RD +
Sbjct: 509 REYALGYHSEKLAIAFGLLKTSRGTVIRIVKNLRMCEDCHSAIKYISVISNREIIVRDKL 568

Query: 628 RYHHFQDGNCSCGDYW 643
           R+HHF++G+CSC DYW
Sbjct: 569 RFHHFKNGSCSCLDYW 584



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 166/339 (48%), Gaps = 17/339 (5%)

Query: 16  SQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSV 75
           S  RQ  L +  P +   T    S+S   +F+ +        ++     M    V   + 
Sbjct: 61  SYTRQIFLIVPNPDSFLFTSLIRSTSKFHNFSVY--------SLYFYTRMVLSNVAPSNY 112

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           T+  +IK C    A+   +++H HVL  GF  + ++   L++ + K  +L  A+ +FD+M
Sbjct: 113 TFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKM 172

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILR 192
            +R+VV+W +MIS Y       +A+ L   M   GV PN  T+ +VL AC  L   I+  
Sbjct: 173 RDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGC 232

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            +H   +  G + +V + ++LI++Y + G +  A  VF+ M  R++V W ++I G+  N 
Sbjct: 233 WVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNG 292

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLIL---- 308
              +A+ L+  M+R G   +  T  +VL AC    L+  G +V    ++ ++ L+     
Sbjct: 293 YGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRV-FESMREEYRLVPEVEH 351

Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVIS-WSTMISG 346
           +  L+DM  + G L++A +    + ++   + W+ M+  
Sbjct: 352 HVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGA 390



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 122/283 (43%), Gaps = 39/283 (13%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M+  GV  +S T+  ++  C    A      VH + +  G +    L   L+N
Sbjct: 196 AIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLIN 255

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ +   + +A+ +FD M ERNVV+WT MIS Y       +A+EL   M R G+ PN  T
Sbjct: 256 MYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSIT 315

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           + AVL AC         H G++  G      V  ++ + Y  + E+ +  C+ + +    
Sbjct: 316 FVAVLSACA--------HAGLVNEGRR----VFESMREEYRLVPEVEHHVCLVDMLGRAG 363

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           L               +DEA N  K +      A     T++L AC       LG QV  
Sbjct: 364 L---------------LDEAYNFIKEIHEEPAPA---IWTAMLGACKMHKNFGLGAQVAE 405

Query: 298 HVLKYD-----HDLILNNALLDMYCKCGSLEDAMSVFSRMIQK 335
           H L  +     H +IL+N    +Y   G ++    V   MI+K
Sbjct: 406 HRLASEPGNPAHYVILSN----IYALAGRMDQVEMVRDNMIRK 444


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/611 (36%), Positives = 351/611 (57%), Gaps = 37/611 (6%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           V  +SVT   +I  C     +E  + V+  + + G E    +V+ L++M++K + ++ A+
Sbjct: 232 VTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAK 291

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL- 188
            LFD+    N+     M S Y    +  +AL +   M+  GVRP+  +  + + +C  L 
Sbjct: 292 RLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLR 351

Query: 189 --IILRQLHCGIIKVGFESDVFVRSALIDIYAKL-------------------------- 220
             +  +  H  +++ GFES   + +ALID+Y K                           
Sbjct: 352 NILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVA 411

Query: 221 -----GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK-RAGFAADQS 274
                GE+  A   F  MP +++V WN+II G  Q S  +EA+ ++  M+ + G  AD  
Sbjct: 412 GYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGV 471

Query: 275 TLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           T+ S+  AC  L  L+L   ++ ++ K     D+ L   L+DM+ +CG  E AMS+F+ +
Sbjct: 472 TMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSL 531

Query: 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
             +DV +W+  I  +A  G ++ A++LF+ M    +KP+ +  VG L ACSH G V+ G 
Sbjct: 532 TNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGK 591

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
             F SM K +G+ P   HY CM+DLLGRAG L+EAV+LI +MP EP+ V W +LL AC+V
Sbjct: 592 EIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRV 651

Query: 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCS 512
             N ++A  AA+KI  L P+  G+Y+LLSN+YA++ +W+++A+VR +M+ +G+ K PG S
Sbjct: 652 QGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTS 711

Query: 513 WIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSI 572
            I++  + H F   D SHP++  I   L  + Q+   +G+ PD + VL D++ ++K   +
Sbjct: 712 SIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFML 771

Query: 573 QYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF 632
             HSEKLA+ +GL+S  +G TIRI KNLR+C DCH+FAK  +K+ N+ I++RD  R+H+ 
Sbjct: 772 SRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYI 831

Query: 633 QDGNCSCGDYW 643
           + G CSCGD+W
Sbjct: 832 RQGKCSCGDFW 842



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 204/435 (46%), Gaps = 42/435 (9%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M   G+  D  T+   +  C    A      +H  ++  G+  + F+ N L++ + +   
Sbjct: 125 MMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGE 184

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR-EGVRPNMFTYSAVLR 183
           L+ A+ +FD+M ERNVVSWT+MI  Y        A++L   M+R E V PN  T   V+ 
Sbjct: 185 LDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVIS 244

Query: 184 ACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           AC  L  L    +++  I   G E +  + SAL+D+Y K   +  A+ +F+E    +L +
Sbjct: 245 ACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDL 304

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
            N++   + +     EAL ++  M  +G   D+ ++ S + +C+ L  +  G   H +VL
Sbjct: 305 CNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVL 364

Query: 301 KYDHDLILN--NALLDMYCKC-------------------------------GSLEDAMS 327
           +   +   N  NAL+DMY KC                               G ++ A  
Sbjct: 365 RNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWE 424

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR-IKPNYITIVGVLFACSHAG 386
            F  M +K+++SW+T+ISGL Q    +EA+++F SM+    +  + +T++ +  AC H G
Sbjct: 425 TFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLG 484

Query: 387 FVE-DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
            ++   W ++   K   GI       + ++D+  R G  + A+ + + +    D   W A
Sbjct: 485 ALDLAKWIYYYIEKN--GIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLT-NRDVSAWTA 541

Query: 446 LLGACKVHRNTDLAI 460
            +GA  +  N + AI
Sbjct: 542 AIGAMAMAGNAERAI 556



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 160/306 (52%), Gaps = 12/306 (3%)

Query: 90  VEEAKLVHNHVLSGGFEPETFLVNILL----NMHVKFSLLEEAQVLFDQMPERNVVSWTT 145
           ++E K+ H  +   G + +   +  L+     +  + SL    +V  +         + +
Sbjct: 45  IDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNS 104

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVG 202
           +I  Y  + + ++A+ L + M+  G+ P+ +T+   L AC          Q+H  I+K+G
Sbjct: 105 LIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMG 164

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262
           +  D+FV+++L+  YA+ GEL +A  VF+EM  R++V W S+I G+A+     +A++L+ 
Sbjct: 165 YAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFF 224

Query: 263 RMKRAGFAADQS-TLTSVLRACTGLALLELGTQVHVHVLKYD---HDLILNNALLDMYCK 318
           RM R       S T+  V+ AC  L  LE G +V+  +       +DL++ +AL+DMY K
Sbjct: 225 RMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV-SALVDMYMK 283

Query: 319 CGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
           C +++ A  +F      ++   + M S   + G ++EAL +F  M  S ++P+ I+++  
Sbjct: 284 CNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSA 343

Query: 379 LFACSH 384
           + +CS 
Sbjct: 344 ISSCSQ 349



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 135/259 (52%), Gaps = 8/259 (3%)

Query: 182 LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLG---ELRNAECVF-NEMPTRD 237
           L+ C ++  L+  H  + K G ++DV   + L+    +LG    L  A+ VF N      
Sbjct: 39  LKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGT 98

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
             ++NS+I G+A +   +EA+ L+ RM  +G + D+ T    L AC        G Q+H 
Sbjct: 99  CFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHG 158

Query: 298 HVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
            ++K  Y  DL + N+L+  Y +CG L+ A  VF  M +++V+SW++MI G A+  ++++
Sbjct: 159 LIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKD 218

Query: 356 ALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414
           A+ LF  M +   + PN +T+V V+ AC+    +E G   +  ++   GI+      S +
Sbjct: 219 AVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRN-SGIEVNDLMVSAL 277

Query: 415 IDLLGRAGKLQEAVKLIHE 433
           +D+  +   +  A +L  E
Sbjct: 278 VDMYMKCNAIDVAKRLFDE 296


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/602 (36%), Positives = 344/602 (57%), Gaps = 19/602 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M   G++A       ++  C +   V++ +++H+ +   GFE E  + N ++ 
Sbjct: 144 ALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVMT 203

Query: 118 MHVKFSLLEEAQVLFDQMPE--RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
           M+ +   +EEA+ +FD M E  R+VVSW  M+S Y     ND+  + +    R  +RP+ 
Sbjct: 204 MYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVH---NDRGKDAIQLYQRMQLRPDK 260

Query: 176 FTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
            TY ++L AC S   + + R LH  I+    E +V V +AL+ +YAK G    A  VF++
Sbjct: 261 VTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDK 320

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM---KRAGFA----ADQSTLTSVLRACTG 285
           M  R ++ W +II  + +   V EA +L+++M   ++ G +     D     ++L AC  
Sbjct: 321 MEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACAD 380

Query: 286 LALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK-DVISWST 342
           ++ LE G  V           D  +  A++++Y KCG +E+A  +F  +  + DV  W+ 
Sbjct: 381 VSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNA 440

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           MI+  AQ G S EALKLF  M++  ++P+  + V +L ACSH G  + G ++F SM   Y
Sbjct: 441 MIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEY 500

Query: 403 -GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
             +    +H+ C+ DLLGR G+L+EA + + ++P +PDAV W +LL AC+ HR+   A  
Sbjct: 501 RNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKE 560

Query: 462 AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIH 521
            A K+L L+P+    Y+ LSNIYA  QKW  VA+VRK M  +G+ KE G S IE+ K +H
Sbjct: 561 VANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMH 620

Query: 522 AFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAI 581
            F   D +HP+  +I + L  L  ++   GY PDT  VL  ++ ++KE  +  HSE+LAI
Sbjct: 621 DFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAI 680

Query: 582 VFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641
             GL+S   G  +R+ KNLR+C DCHT  KL +K+  + IV+RDP R+H F+DG CSC D
Sbjct: 681 ALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQD 740

Query: 642 YW 643
           YW
Sbjct: 741 YW 742



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/405 (29%), Positives = 207/405 (51%), Gaps = 19/405 (4%)

Query: 59  MKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118
           ++A+  M+  GVR D+VT+   +  C    ++ +   +H  V+    E +  + N LLNM
Sbjct: 43  LRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNM 102

Query: 119 HVKFSLLEEAQVLFDQMPE-RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           + K   L  A+ +F +M   RNV+SW+ M  A+       +AL    FML  G++     
Sbjct: 103 YKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSA 162

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM- 233
              +L AC S  ++   R +H  I   GFES++ V +A++ +Y + G +  A  VF+ M 
Sbjct: 163 MVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMD 222

Query: 234 -PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
              RD+V WN ++  +  N    +A+ LY+RM+      D+ T  S+L AC+    + LG
Sbjct: 223 EALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQ---LRPDKVTYVSLLSACSSAEDVGLG 279

Query: 293 TQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
             +H  ++  + + ++I+ NAL+ MY KCGS  +A +VF +M Q+ +ISW+T+IS   + 
Sbjct: 280 RVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRR 339

Query: 351 GYSQEALKLFESM-------KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
               EA  LF+ M          R+KP+ +  V +L AC+    +E G           G
Sbjct: 340 RLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQG-KMVSEQAASCG 398

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
           +   +   + +++L G+ G+++EA ++   +   PD   W A++ 
Sbjct: 399 LSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIA 443



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/267 (31%), Positives = 160/267 (59%), Gaps = 11/267 (4%)

Query: 127 EAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD 186
           +A+  FD + +RN+ SWT +++A+  +  + + L  L  M ++GVRP+  T+   L +C 
Sbjct: 10  DAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCG 69

Query: 187 SLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP-TRDLVVWN 242
               LR   ++H  ++    E D  V +AL+++Y K G L +A+ VF +M  TR+++ W+
Sbjct: 70  DPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWS 129

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVL 300
            + G  A + +V EAL  ++ M   G  A +S + ++L AC+  AL++ G  +H  + + 
Sbjct: 130 IMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALS 189

Query: 301 KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--KDVISWSTMISGLAQNGYSQEALK 358
            ++ +L++ NA++ MY +CG++E+A  VF  M +  +DV+SW+ M+S    N   ++A++
Sbjct: 190 GFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQ 249

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHA 385
           L++ M+   ++P+ +T V +L ACS A
Sbjct: 250 LYQRMQ---LRPDKVTYVSLLSACSSA 273



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 152/306 (49%), Gaps = 16/306 (5%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           R   A+   Q   +R D VTY  L+  C +   V   +++H  +++   E    + N L+
Sbjct: 243 RGKDAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALV 302

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR-------E 169
           +M+ K     EA+ +FD+M +R+++SWTT+ISAY   ++  +A  L   ML        +
Sbjct: 303 SMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQ 362

Query: 170 GVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
            V+P+   +  +L AC  +  L Q   +       G  SD  V +A++++Y K GE+  A
Sbjct: 363 RVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEA 422

Query: 227 ECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
             +F+ + +R D+ +WN++I  +AQ     EAL L+ RM+  G   D  +  S+L AC+ 
Sbjct: 423 RRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSH 482

Query: 286 LALLELG----TQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISW 340
             L + G    T +          +     + D+  + G L++A     ++ ++ D ++W
Sbjct: 483 TGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAW 542

Query: 341 STMISG 346
           +++++ 
Sbjct: 543 TSLLAA 548



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 142/328 (43%), Gaps = 40/328 (12%)

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           +YA      +A+  F+ +  R+L  W  ++  FA +    E L   +RM++ G   D  T
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 276 LTSVLRACTGLALLELGTQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
             + L +C     L  G ++H  V+  + + D  ++NALL+MY KCGSL  A  VF++M 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 334 Q-KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392
           + ++VISWS M    A +G   EAL+ F  M +  IK     +V +L ACS    V+DG 
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG- 179

Query: 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE-------------------------- 426
               S     G +      + ++ + GR G ++E                          
Sbjct: 180 RMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYV 239

Query: 427 -------AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI- 478
                  A++L   M   PD VT+ +LL AC    +  L     K+I+N D  +    + 
Sbjct: 240 HNDRGKDAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVN-DELEKNVIVG 298

Query: 479 -LLSNIYANSQKWDEVAEVRKTMRARGI 505
             L ++YA      E   V   M  R I
Sbjct: 299 NALVSMYAKCGSHTEARAVFDKMEQRSI 326


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/552 (40%), Positives = 330/552 (59%), Gaps = 17/552 (3%)

Query: 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK--ALELLI 164
           P TF +   +        L  A  +F Q+   N   W  +I A C    + K  A+ L  
Sbjct: 58  PNTFFLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRA-CARSTDRKQHAIALYH 116

Query: 165 FMLREG-VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKL 220
            ML +G V  +  T+  VL+AC  L  L    Q+H  I+K+GF+SDV++ ++L+  YA  
Sbjct: 117 RMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATC 176

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
             L  A+ VF+ M  R LV WN +I  F +  + D ALNL+  M++  F  D  T+ S+ 
Sbjct: 177 DRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQKF-FEPDGYTIQSIA 235

Query: 281 RACTGLALLELGTQVHVHVLK-YD----HDLILNNALLDMYCKCGSLEDAMSVFSRMIQK 335
            AC G+  L LG   HV +LK +D    +D++LN +L+DMYCKCGSLE A+ +F RM ++
Sbjct: 236 NACAGMGSLSLGMWAHVFLLKKFDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKR 295

Query: 336 DVISWSTMISGLAQNGYSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
           DV SW++MI G + +G    AL+ F  M +  ++ PN IT VGVL AC+H G V +G  +
Sbjct: 296 DVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRY 355

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC-KVH 453
           F  M   Y I P  EHY C++DLL RAG + EA+ ++  MP  PD V WR+LL AC K +
Sbjct: 356 FDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQN 415

Query: 454 RNTDLAICAAKKILNLDPQD-PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCS 512
              +L+   A+++L  +     G Y+LLS +YA++ +W++V  VRK M  +G+ KEPGCS
Sbjct: 416 AGVELSEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCS 475

Query: 513 WIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYV-LQDLEGEQKEDS 571
            IE++   H F   D+SHPQ ++I   L  + +++  VGY+PD++   + D   + K+ S
Sbjct: 476 SIEIDGVAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGKQYS 535

Query: 572 IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHH 631
           ++ HSE+LAI FGL+    G  IRI KNLR+C +CH   KL +++ N+ I++RD IR+HH
Sbjct: 536 LRLHSERLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHH 595

Query: 632 FQDGNCSCGDYW 643
           F+DG CSC DYW
Sbjct: 596 FKDGACSCMDYW 607



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 169/357 (47%), Gaps = 18/357 (5%)

Query: 58  AMKAMHAMQCHG-VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           A+   H M   G V  D  T+  ++K C    A+ E + +H  +L  GF+ + ++ N L+
Sbjct: 111 AIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLV 170

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           + +     L+ A+ +FD+M ER++VSW  +I A+      D AL L   M ++   P+ +
Sbjct: 171 HFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEM-QKFFEPDGY 229

Query: 177 TYSAVLRAC---DSLIILRQLHCGIIKVGFES----DVFVRSALIDIYAKLGELRNAECV 229
           T  ++  AC    SL +    H  ++K  F++    DV + ++L+D+Y K G L  A  +
Sbjct: 230 TIQSIANACAGMGSLSLGMWAHVFLLK-KFDADRVNDVLLNTSLVDMYCKCGSLELALQL 288

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA-GFAADQSTLTSVLRACTGLAL 288
           F+ MP RD+  WNS+I GF+ + +V  AL  +  M R      +  T   VL AC    L
Sbjct: 289 FHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGL 348

Query: 289 LELGTQ---VHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMI 344
           +  G +   V V   K   +L     L+D+  + G +++A+ V S M ++ D++ W +++
Sbjct: 349 VSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLL 408

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
               +       ++L E M    ++       GV    S        WN    ++K 
Sbjct: 409 DACCKQ---NAGVELSEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKL 462


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/563 (38%), Positives = 332/563 (58%), Gaps = 16/563 (2%)

Query: 96  VHNHVLSGGFEPETFLVNILLNM-HVKFS-LLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
           +H H+L  G++    +   LLN   V  S  L  AQ++F ++      +W +MI  +  +
Sbjct: 42  IHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQS 101

Query: 154 KMNDKALELLIF---MLREG-VRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESD 206
             +   L+ ++F   ML     RP+ +T+S +L+AC+        R++H  II+ G++ D
Sbjct: 102 P-SPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQD 160

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
           V + + LI  YA  G +  A  VF EMP RDLV WNS+I  + Q    +EAL +Y +M+ 
Sbjct: 161 VVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRI 220

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLED 324
           +    D  TL S+L +C  +  L +G Q+H      +   ++ + NAL+DMY KCGSL  
Sbjct: 221 SNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLAS 280

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           A+S+F+ M ++DV +W++MI G   +G   EA+  F SM ++ ++PN IT +G+L  CSH
Sbjct: 281 ALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSH 340

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
            G V++G  +F  M   + + PG +HY CM+DL GRAGKL+EA+++I   P + D V WR
Sbjct: 341 QGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWR 400

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
            LLG+CK+HRN ++   A + ++ L     G  +LLS IYA ++    VA +RK +++RG
Sbjct: 401 TLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRG 460

Query: 505 ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLE 564
           I   PG SWIEV  Q+H F V D SHP   +I + L+ +I +   VGYA + + ++   E
Sbjct: 461 IKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAPE 520

Query: 565 GEQK----EDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQT 620
              +    E S  YHSEKLAI +GL    +G ++ I KNLR+C DCH F K  +   ++ 
Sbjct: 521 SNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFTKFVSMAFDRE 580

Query: 621 IVIRDPIRYHHFQDGNCSCGDYW 643
           I++RD +R+HHF+ G+CSC ++W
Sbjct: 581 IIVRDRVRFHHFKGGHCSCKEFW 603



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 168/327 (51%), Gaps = 21/327 (6%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPRAMKAM----HAMQCHGVRADSVTYAELIKCCLARH 88
           N  T   +S++  F+    Q   P  ++A+    H +     R D+ T++ L+K C    
Sbjct: 85  NPQTPAWNSMIRGFS----QSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKAC--EE 138

Query: 89  AVEEAKL--VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTM 146
           A EE K   VH  ++  G++ +  L   L+  +    L+E A  +F++MP R++VSW +M
Sbjct: 139 AKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSM 198

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGF 203
           IS YC   ++++AL++   M    V  + FT  ++L +C  +  L    Q+H    +   
Sbjct: 199 ISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRL 258

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
             ++FV +ALID+YAK G L +A  +FN MP RD+  WNS+I G+  +   DEA+  +  
Sbjct: 259 VENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGS 318

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKC 319
           M  AG   +  T   +L  C+   L++ G Q + H++  + +L         ++D++ + 
Sbjct: 319 MLMAGVRPNSITFLGLLCGCSHQGLVKEGVQ-YFHMMSSEFNLKPGIKHYGCMVDLFGRA 377

Query: 320 GSLEDAMSVF-SRMIQKDVISWSTMIS 345
           G L++A+ V  S   Q D + W T++ 
Sbjct: 378 GKLKEALEVIRSSPSQHDPVLWRTLLG 404



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 149/291 (51%), Gaps = 15/291 (5%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRD 237
           ++L+ C+S+  L ++H  I+  G++ +  +   L++  A    G L  A+ VF+ +    
Sbjct: 28  SLLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQ 87

Query: 238 LVVWNSIIGGFAQNSDV--DEALNLYKRMKRAGFA-ADQSTLTSVLRACTGLALLELGTQ 294
              WNS+I GF+Q+      +A+  Y  M  A  A  D  T + +L+AC          +
Sbjct: 88  TPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCRE 147

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           VH  +++  YD D++L   L+  Y   G +E A  VF  M  +D++SW++MIS   Q G 
Sbjct: 148 VHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGL 207

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY- 411
            +EALK+++ M++S +  +  T+V +L +C+H G +  G      M +F G     E+  
Sbjct: 208 HEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMG----VQMHRFAGERRLVENIF 263

Query: 412 --SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
             + +ID+  + G L  A+ + + MP + D  TW +++    VH   D AI
Sbjct: 264 VGNALIDMYAKCGSLASALSIFNSMP-KRDVFTWNSMIVGYGVHGRGDEAI 313



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 117/288 (40%), Gaps = 44/288 (15%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           +C       A+K    M+   V  D  T   L+  C    A+     +H           
Sbjct: 202 YCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVEN 261

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F+ N L++M+ K   L  A  +F+ MP+R+V +W +MI  Y      D+A+     ML 
Sbjct: 262 IFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLM 321

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRS------------ALIDI 216
            GVRPN  T+  +L  C         H G++K G +    + S             ++D+
Sbjct: 322 AGVRPNSITFLGLLCGCS--------HQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDL 373

Query: 217 YAKLGELRNAECVFNEMPTR-DLVVWNSIIGG--FAQNSDVDE----------ALNLYKR 263
           + + G+L+ A  V    P++ D V+W +++G     +N ++ E          +L     
Sbjct: 374 FGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDC 433

Query: 264 MKRAGFAADQSTLTSVLR-----------ACTGLALLELGTQVHVHVL 300
           +  +G  A+   L  V R              G + +E+G QVH  V+
Sbjct: 434 VLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVV 481


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/632 (36%), Positives = 337/632 (53%), Gaps = 48/632 (7%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           LP      H      + AD    A L  C  A  A E    +H   +    + +  +   
Sbjct: 7   LPSPASTRHPAGGGALTADRAA-ALLAGCASASRAAE----IHAAAVRASVDQDKAVAFR 61

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML--REGVR 172
           L   +     L+ A  L  + P+   V +T+ I A+    ++  AL LL  ML  R G+ 
Sbjct: 62  LQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLL 121

Query: 173 PNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIY--------------- 217
           P   T SA L AC  L + R LH   +K+    + +V +AL+ +Y               
Sbjct: 122 PTAHTLSASLPACGCLAVGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDG 181

Query: 218 -----------------AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNL 260
                            AK+G+L +A  +F+ +P +DLV WN+++ G+ Q+    EAL L
Sbjct: 182 MRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRL 241

Query: 261 YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH------DLILNNALLD 314
           +++M R+G   D+ ++   L A   L   E G  +H  V           +  +  AL+D
Sbjct: 242 FRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVD 301

Query: 315 MYCKCGSLEDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
           MY KCGSLE+A++VF  +     +DV++W+ MI+G A +G S+EAL+ F  ++   + P 
Sbjct: 302 MYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPT 361

Query: 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431
            IT +GVL ACSH+G V++G   F +M++ YGI P  EHY CM+DLLGRAG+++EA  L+
Sbjct: 362 DITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLV 421

Query: 432 HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491
             M  +PDA  W +LLGAC++H+N  L    A  ++     + GTY+LLSN+YA + KW 
Sbjct: 422 QSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWR 481

Query: 492 EVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVG 551
           EV  VR  MRA G+ KEPGCS +EV +++  F   D SHP+  +I   L+ +       G
Sbjct: 482 EVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARARG 541

Query: 552 YAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAK 611
           + P T  VL DL+   KE ++  HSEKLA+ FGL+S      I+I KNLR C DCH   K
Sbjct: 542 HVPHTELVLHDLDDAAKERALAVHSEKLALAFGLISTPPRTGIKIVKNLRACADCHAVLK 601

Query: 612 LTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           L ++   + IV RD  R+HHF DG+CSCGDYW
Sbjct: 602 LVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/554 (38%), Positives = 334/554 (60%), Gaps = 11/554 (1%)

Query: 92  EAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
           +A+L+ + + S   +P    V  L+      + + +A ++F  +   N+ +    + A  
Sbjct: 8   QAQLITSPIPSSVVDPNLIAVK-LIGACADHANVRQAALIFAHLASPNIFAHNATLKALA 66

Query: 152 DAKMNDKALELLIFMLREGVRPN--MFTYSAVLRACDSL---IILRQLHCGIIKVGFESD 206
                  A++     +     PN   FT+++VL+AC  L   +  +++H  + K GFES+
Sbjct: 67  QNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESN 126

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRD--LVVWNSIIGGFAQNSDVDEALNLYKRM 264
           +FVR++LID+Y K G L  A  +F+EM  RD  +V WN++I G+AQN    +A+ +++ M
Sbjct: 127 LFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMM 186

Query: 265 KR-AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGS 321
           ++  G   +  TL SVL AC  L  L+LG  +   + + +    L L NAL DMY KCG 
Sbjct: 187 QQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGC 246

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
           + +A  VF++M ++DVISWS +I GLA  G++ EA   F  M     KPN +  +G+L A
Sbjct: 247 ITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTA 306

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
           C+HAG V+ G N F +M K YG+ P  EHY C++DLL RAG+L +A  +I  MP +P+ +
Sbjct: 307 CTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVI 366

Query: 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501
            W ALLG C+++R++       + IL LD    G+Y+ L+N+Y++  + D+ A+ R  MR
Sbjct: 367 IWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRLRMR 426

Query: 502 ARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQ 561
             G+ K PGCSWIEV+  +H F + D SHP+ +KI   ++ L+ K+   GY P T+ V+ 
Sbjct: 427 ENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKIYSMIRELMWKMKLAGYKPKTDLVVH 486

Query: 562 DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTI 621
            ++ E+KED++  HSEKLAI FGL+S ++G TIR+ KNLRIC DCH  AK+ + +  + I
Sbjct: 487 SIDEEEKEDALSIHSEKLAIAFGLISTSEGTTIRVVKNLRICNDCHDAAKIISGIVKREI 546

Query: 622 VIRDPIRYHHFQDG 635
           ++RD  R+HHF+DG
Sbjct: 547 IVRDRSRFHHFKDG 560



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 136/294 (46%), Gaps = 30/294 (10%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D  T+  ++K C     V   + +H  V   GFE   F+ N L++M+ K   L  A+ LF
Sbjct: 91  DEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLF 150

Query: 133 DQM--PERNVVSWTTMISAYCDAKMNDKALELLIFMLR-EGVRPNMFTYSAVLRAC---- 185
           D+M   +RNVV W  MI+ Y   +    A+E+   M +  GV PN  T  +VL AC    
Sbjct: 151 DEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLG 210

Query: 186 --------DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
                   D  I  R++  G+         F+ +AL D+YAK G +  A  VFN+M  RD
Sbjct: 211 ALDLGKWIDGFISRREMALGL---------FLGNALADMYAKCGCITEARRVFNKMEERD 261

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           ++ W+ II G A     DEA   +  M   G   +      +L ACT   L++ G     
Sbjct: 262 VISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNC-F 320

Query: 298 HVLKYDHDLILN----NALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
           + +  ++ +         ++D+  + G L+ A  + S M ++ +VI W  ++ G
Sbjct: 321 NTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGG 374



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 5/187 (2%)

Query: 66  QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL 125
           Q  GV  + VT   ++  C    A++  K +   +         FL N L +M+ K   +
Sbjct: 188 QFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCI 247

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
            EA+ +F++M ER+V+SW+ +I         D+A      ML  G +PN   +  +L AC
Sbjct: 248 TEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTAC 307

Query: 186 D-SLIILRQLHCGII---KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVV 240
             + ++ + L+C      + G    V     ++D+ ++ GEL  AE + + MP + ++++
Sbjct: 308 THAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVII 367

Query: 241 WNSIIGG 247
           W +++GG
Sbjct: 368 WGALLGG 374


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/616 (37%), Positives = 342/616 (55%), Gaps = 21/616 (3%)

Query: 38  NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVH 97
           N+ S     + +  Q  L +A+     M   G +  S  Y  L+K  +   A++  + +H
Sbjct: 146 NAVSRTTMISAYAEQGLLDKAVGLFSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIH 205

Query: 98  NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND 157
            HV+  G      +   ++NM+VK   L  A+ +FDQM  +  V+WT ++  Y  A    
Sbjct: 206 AHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRAR 265

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALI 214
            AL+L + ++ EGV  + F +S VL+AC SL  LR   Q+H  + K+G E +V V + L+
Sbjct: 266 DALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFGKQIHACVAKLGLECEVSVGTPLV 325

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK-RAGFAADQ 273
           D Y K     +A   F E+   + V W++II G+ Q S  +EA+  +K ++ +     + 
Sbjct: 326 DFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNS 385

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVF 329
            T TS+ +AC+ LA   +G QVH   +K    LI +    +AL+ MY KCG L+DA  VF
Sbjct: 386 FTYTSIFQACSVLADCNIGGQVHADAIK--RSLIGSQYGESALITMYSKCGCLDDAHEVF 443

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
             M   D+++W+  ISG A  G + EAL+LFE M    +KPN +T + VL ACSHAG VE
Sbjct: 444 ESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVE 503

Query: 390 DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            G ++  +M + Y + P  +HY CMID+  R+G L EA++ +  MP+EPDA++W+  L  
Sbjct: 504 QGKHYLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALRFMKNMPFEPDAMSWKCFLSG 563

Query: 450 CKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEP 509
           C  H+N +L   A +++  LDP+D   Y+L  N+Y  + KW+E AEV K M  R + KE 
Sbjct: 564 CWTHKNLELGKIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEVMKLMNERMLKKEL 623

Query: 510 GCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKE 569
            CSWI+   +IH F V D  HPQ  +I + LK     + G         + Q    E++E
Sbjct: 624 SCSWIQEKGKIHRFIVGDKHHPQSQEIYEKLKEFDGFMEGD--------MFQCSMTERRE 675

Query: 570 DSIQYHSEKLAIVFGLMSLTQG--KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPI 627
             +  HSE+LAI FGL+S+       I++ KNLR C DCH FAK  + +    IVIRD  
Sbjct: 676 QLLD-HSERLAIAFGLISVNGNARAPIKVFKNLRACPDCHEFAKHVSLVTGHEIVIRDSR 734

Query: 628 RYHHFQDGNCSCGDYW 643
           R+HHF++G CSC DYW
Sbjct: 735 RFHHFKEGKCSCNDYW 750



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 125/422 (29%), Positives = 204/422 (48%), Gaps = 12/422 (2%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           L  A +    M   GV     +Y  L + C    ++   +L+HN +  G   P   L N 
Sbjct: 62  LNEAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRMRMGIENPSVLLQNC 121

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           +L M+ +   LE+A  LFD+M + N VS TTMISAY +  + DKA+ L   ML  G +P 
Sbjct: 122 VLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESGDKPP 181

Query: 175 MFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231
              Y+ +L++     +L I RQ+H  +I+ G  S+  + + ++++Y K G L  A+ VF+
Sbjct: 182 SSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFD 241

Query: 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291
           +M  +  V W  ++ G+ Q     +AL L+  +   G   D    + VL+AC  L  L  
Sbjct: 242 QMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRF 301

Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G Q+H  V K   + ++ +   L+D Y KC S E A   F  + + + +SWS +ISG  Q
Sbjct: 302 GKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQ 361

Query: 350 NGYSQEALKLFESMKVSR-IKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKK-FYGIDP 406
               +EA+K F+S++    +  N  T   +  ACS       G   H  ++K+   G   
Sbjct: 362 MSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQY 421

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
           G    S +I +  + G L +A ++   M   PD V W A +     + N   A+   +K+
Sbjct: 422 GE---SALITMYSKCGCLDDAHEVFESMD-NPDIVAWTAFISGHAYYGNASEALRLFEKM 477

Query: 467 LN 468
           ++
Sbjct: 478 VS 479



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 2/125 (1%)

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHD 305
            +++  ++EA   ++ M +AG +    +   +  AC  L  L  G  +H  + +   +  
Sbjct: 56  LSKHGKLNEAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRMRMGIENPS 115

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           ++L N +L MYC+CGSLEDA  +F  M   + +S +TMIS  A+ G   +A+ LF  M  
Sbjct: 116 VLLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLE 175

Query: 366 SRIKP 370
           S  KP
Sbjct: 176 SGDKP 180


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/583 (38%), Positives = 333/583 (57%), Gaps = 33/583 (5%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           MQ  GV  ++ TY  ++K C +       ++VH  V+  GF  + F+   L++M+ K   
Sbjct: 123 MQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGE 182

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           + +A  +FD+M  R+VV WT MI+ Y  A+   KAL L   M  EG   +  T  +V  A
Sbjct: 183 IGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASA 242

Query: 185 CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
                 + QL  G + +                        A  VF+ M  R+ + WNS+
Sbjct: 243 ------VGQLGDGRMAIS----------------------RARLVFDRMEERNGISWNSM 274

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KY 302
           + G+ QN    +AL+L+ +M+ +    +  T   ++ AC+ L    LG ++H  V+  K 
Sbjct: 275 LSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKM 334

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFS--RMIQKDVISWSTMISGLAQNGYSQEALKLF 360
           D D  L NA++DMY KCG L+ A+ +F+   + ++DV SW+ +ISG   +G+ +EAL+LF
Sbjct: 335 DIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELF 394

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420
             M+V  ++PN IT   +L ACSHAG +++G   F  M K   + P  +HY+CM+D+LGR
Sbjct: 395 SRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-SVRPEMKHYACMVDMLGR 453

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480
           AG L EA +LI ++P  P    W ALL AC++H NT+L   AA  +  L+P+  G Y+L+
Sbjct: 454 AGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLM 513

Query: 481 SNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHL 540
           SNIYA S KW EV  VR+ M++RG+ K    S IE   ++H F+ AD S P   ++ + +
Sbjct: 514 SNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKV 573

Query: 541 KHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNL 600
           + L  ++  VGY PD + VL D+E E KE  + YHSEKLA+ FG+M + QG  I++ KNL
Sbjct: 574 ESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNL 633

Query: 601 RICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           R+C DCH   K  + +  + I++RD  R+HHFQ G CSCGDYW
Sbjct: 634 RVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 676



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 124/418 (29%), Positives = 204/418 (48%), Gaps = 60/418 (14%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPET--FLVNILLNMHVKFSLLEEAQVLFD- 133
           Y  L++CC +   +   KL+H+ + + GF   T  FL  +++ ++ K   L  A+ LFD 
Sbjct: 28  YDHLLQCCTS---LTTLKLIHSSLSTRGFLLHTPHFLARLII-LYSKLGDLHSARTLFDH 83

Query: 134 ---------QMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
                    Q P  N     TM+ AY +A  + +A++L I+M R GV  N FTY  VL+ 
Sbjct: 84  RHHHHHGHTQAP--NSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKV 141

Query: 185 CDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C S    +    +H  +++ GF SD+FV +AL+D+YAK GE+ +A  VF+ M  RD+V W
Sbjct: 142 CASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCW 201

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
            ++I  + Q     +AL L+++M+  GF  D+ T  SV  A   L               
Sbjct: 202 TAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLG-------------- 247

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
            D  + ++ A L              VF RM +++ ISW++M+SG  QNG   +AL LF 
Sbjct: 248 -DGRMAISRARL--------------VFDRMEERNGISWNSMLSGYTQNGRPTDALSLFN 292

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY---GIDPGREHYSCMIDLL 418
            M+ S   PN +T + ++ ACS+ G    G    + +  F     +D      + ++D+ 
Sbjct: 293 QMQASECDPNPVTALIMVSACSYLGSKHLG----RKLHNFVISSKMDIDTTLRNAIMDMY 348

Query: 419 GRAGKLQEAVKLIHEMPY-EPDAVTWRALLGACKVHRNTD--LAICAAKKILNLDPQD 473
            + G L  AV++ +     E D  +W  L+    VH +    L + +  ++  ++P D
Sbjct: 349 MKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPND 406


>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
 gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
          Length = 805

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/600 (37%), Positives = 331/600 (55%), Gaps = 9/600 (1%)

Query: 52  QRDLPR-AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVE--EAKLVHNHVLSGGFEPE 108
           Q   PR A++  + M   G+  D VT+  + K C +  ++   + K  H  +   G   +
Sbjct: 207 QNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHTCLDETGLGSD 266

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             +   L+N + +   ++ A+  F  MPERN VSWT+MI+A+     +  A+E    ML 
Sbjct: 267 VVVATALVNAYARCGEIDCAREFFAAMPERNAVSWTSMIAAFAQIG-HLLAVETFHAMLL 325

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
           EGV P   T  A L  C+ L   R +     ++G  +DV + + L+  YA+     +A  
Sbjct: 326 EGVVPTRSTLFAALEGCEDLHTARLVEAIAQEIGVATDVAIVTDLVMAYARCDGQEDAIR 385

Query: 229 VFN--EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
           VF+  E    D  +  ++I  +AQ  D      L+      G + D+    + L AC  L
Sbjct: 386 VFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDACASL 445

Query: 287 ALLELGTQVHVHVL---KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           A L  G Q+H  V    + D D+ L NA++ MY +CGSL DA   F  M  +D ISW+ M
Sbjct: 446 AALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAM 505

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
           +S  AQ+G  ++   LF +M         +  + +L AC+HAG VE G  HF +M   +G
Sbjct: 506 LSASAQHGRVEDCCDLFRAMLQEGFDAERVAFLNLLSACAHAGLVEAGCEHFSAMTGDHG 565

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
           + P  EHY CM+DLLGR G+L +A  ++  MP  PDA TW AL+GAC+++ +T+    AA
Sbjct: 566 VVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYGDTERGRFAA 625

Query: 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAF 523
           +++L L       Y+ L NIY+ + +W++ A VRK M   G+ K PG S IE+  ++H F
Sbjct: 626 ERVLELRANHTAAYVALCNIYSAAGRWEDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEF 685

Query: 524 NVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVF 583
            V D SHPQ + I   L+ ++  +   GY   T  VL D+E EQKE  +++HSEKLAI F
Sbjct: 686 VVRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLLRFHSEKLAIAF 745

Query: 584 GLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           G+MS  QG T+R+ KNLR+C DCH  +K  +K+  + IV+RD  R+HHF+DG CSCGDYW
Sbjct: 746 GMMSTPQGSTLRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRFHHFKDGACSCGDYW 805



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 162/319 (50%), Gaps = 13/319 (4%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP-ETFLVNILLNMHVKFSLLEEAQVL 131
           DS     L++ C   +++   KL+H+ + S      + +L + L+ M+++   LE A  +
Sbjct: 28  DSAAAVRLVREC---NSIARGKLLHSKISSSQSLSRDGYLASSLVYMYLRCGSLESAIDV 84

Query: 132 FDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS---L 188
           F ++  +++V WT +ISAY     +  A+ L   +L+EG+  +   + +VL AC S   L
Sbjct: 85  FHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEFL 144

Query: 189 IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGG 247
              R +H   ++ G      V SAL+ +Y + G LR+A  +F  +    D+V+WN++I  
Sbjct: 145 AAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITA 204

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV----LKYD 303
            +QN    EAL ++ RM + G   D  T  SV +AC+    L        H         
Sbjct: 205 NSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHTCLDETGLG 264

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D+++  AL++ Y +CG ++ A   F+ M +++ +SW++MI+  AQ G+   A++ F +M
Sbjct: 265 SDVVVATALVNAYARCGEIDCAREFFAAMPERNAVSWTSMIAAFAQIGHLL-AVETFHAM 323

Query: 364 KVSRIKPNYITIVGVLFAC 382
            +  + P   T+   L  C
Sbjct: 324 LLEGVVPTRSTLFAALEGC 342



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 140/274 (51%), Gaps = 6/274 (2%)

Query: 181 VLRACDSLIILRQLHCGIIKVGFES-DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
           ++R C+S+   + LH  I      S D ++ S+L+ +Y + G L +A  VF+++  + +V
Sbjct: 35  LVRECNSIARGKLLHSKISSSQSLSRDGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIV 94

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
           +W  +I  +        A+ L+ R+ + G A D     SVL AC+    L  G  +H   
Sbjct: 95  LWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCA 154

Query: 300 LKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQK-DVISWSTMISGLAQNGYSQEA 356
           ++    L  I+ +AL+ MY +CGSL DA ++F  + +  DV+ W+ MI+  +QNG  +EA
Sbjct: 155 VEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITANSQNGSPREA 214

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW-NHFKSMKKFYGIDPGREHYSCMI 415
           L++F  M    I P+ +T V V  ACS +  +       F +     G+       + ++
Sbjct: 215 LEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHTCLDETGLGSDVVVATALV 274

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           +   R G++  A +    MP E +AV+W +++ A
Sbjct: 275 NAYARCGEIDCAREFFAAMP-ERNAVSWTSMIAA 307



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 4/209 (1%)

Query: 272 DQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSR 331
           D +    ++R C  +A  +L             D  L ++L+ MY +CGSLE A+ VF +
Sbjct: 28  DSAAAVRLVRECNSIARGKLLHSKISSSQSLSRDGYLASSLVYMYLRCGSLESAIDVFHK 87

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           +  K ++ W+ +IS     G+S  A+ LF  +    I  + I  V VL ACS   F+  G
Sbjct: 88  IAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEFLAAG 147

Query: 392 -WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
              H  +++   G+       S ++ + GR G L++A  L   +    D V W A++ A 
Sbjct: 148 RLIHRCAVEAGLGLQEIVA--SALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITAN 205

Query: 451 KVHRNTDLAICAAKKILNLD-PQDPGTYI 478
             + +   A+    ++L L  P D  T++
Sbjct: 206 SQNGSPREALEIFYRMLQLGIPPDLVTFV 234


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/567 (38%), Positives = 337/567 (59%), Gaps = 14/567 (2%)

Query: 75  VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ 134
           +TY  +IK C          LVH HV+  GFE ++++VN L++++     L  A+ LF  
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60

Query: 135 MPERNVVSWTTMISAYCD-AKMNDKALELLIFMLREGVRPNMFT--YSAVLRACDSLIIL 191
             +R+VVSW  MI  Y    +M    +     + R+ +  N     Y+ V +  ++  + 
Sbjct: 61  CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLF 120

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
            ++         E ++   ++++  + K G +  A  +F+EMP RD+V WNS++  +AQ 
Sbjct: 121 DEMP--------ERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQC 172

Query: 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLILN 309
              +EAL L+ +M+  G    ++T+ S+L AC  L  L+ G  +H ++   + + + I+ 
Sbjct: 173 GKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVG 232

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
            AL+DMY KCG +  A  VF+ M  KDV++W+T+I+G+A +G+ +EA +LF+ MK + ++
Sbjct: 233 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVE 292

Query: 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           PN IT V +L ACSHAG V++G      M   YGI+P  EHY C+IDLL RAG L+EA++
Sbjct: 293 PNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAME 352

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489
           LI  MP EP+     ALLG C++H N +L     K+++NL P   G YILLSNIYA ++K
Sbjct: 353 LIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKK 412

Query: 490 WDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL-V 548
           WD+  +VR  M+  GI+K PG S IE+   +H F   D SHP+ +KI   L  +  +L  
Sbjct: 413 WDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKS 472

Query: 549 GVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHT 608
            +GY+ DT  VL D+E E KE ++  HSEKLAI +GL+ L   + IRI KNLR+C DCH 
Sbjct: 473 AIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHH 532

Query: 609 FAKLTAKMENQTIVIRDPIRYHHFQDG 635
             KL +K+  + I++RD  R+HHF+DG
Sbjct: 533 VTKLISKVYGREIIVRDRNRFHHFEDG 559



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 4/181 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M+  GV+    T   L+  C    A+++   +H ++     E  + +   L++
Sbjct: 178 ALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVD 237

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   +  A  +F+ M  ++V++W T+I+         +A +L   M    V PN  T
Sbjct: 238 MYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDIT 297

Query: 178 YSAVLRACDSLIILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           + A+L AC    ++ +    L C     G E  V     +ID+ A+ G L  A  +   M
Sbjct: 298 FVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTM 357

Query: 234 P 234
           P
Sbjct: 358 P 358


>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
          Length = 838

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/597 (37%), Positives = 323/597 (54%), Gaps = 65/597 (10%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           RA++    MQ   ++ D VT A L+  C +  A  + K +H++V+  G   +  +   LL
Sbjct: 297 RALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLL 356

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
           +++VK   +E A   F      NVV W  M+ AY       ++  + + M  EG+ PN +
Sbjct: 357 DLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQY 416

Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           TY ++LR C SL  L    Q+H  +IK GF+ +V+V S LID+YAK GEL  A  +   +
Sbjct: 417 TYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRL 476

Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
              D+V W ++I G+ Q+    EAL L++ M+  G  +D    +S + AC G+  L  G 
Sbjct: 477 REEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQ 536

Query: 294 QVHV--HVLKYDHDLILNNAL-----LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           Q+H   ++  Y  DL + NAL     + +Y KCGS+EDA   F  M +K+V+SW+ MI+G
Sbjct: 537 QIHAQSYISGYSEDLSIGNALASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITG 596

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
            +Q+GY  EA+ LF                                   + MK+      
Sbjct: 597 YSQHGYGSEAVSLF-----------------------------------EEMKQL----- 616

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
                          G +   V  + EMP EPDA+ WR LL AC VH+N ++   AA+ +
Sbjct: 617 ---------------GLMPNHVTFVGEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHL 661

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
           L L+P+D  TY+LLSN+YA S KWD     R+ M+ RG+ KEPG SWIEV   IHAF V 
Sbjct: 662 LELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVG 721

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D  HP  ++I +++  L ++   +GY  D   +L D+E EQK+ +   HSEKLA+ FGL+
Sbjct: 722 DRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLL 781

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           SLT    IR+ KNLR+C DCH + K  +K+ N+ IV+RD  R+HHF+ G CSC DYW
Sbjct: 782 SLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 838



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 189/328 (57%), Gaps = 6/328 (1%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  G+RA+  TY  L + C    ++ +AK +H  +   GF+ E  L + L+++++    
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           ++ A  LFD +P  NV  W  +IS     K+  + L L   M+ E V P+  T+++VLRA
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 185 CDS----LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
           C        +  Q+H  II  GF S   V + LID+Y+K G +  A+ VF  +  +D V 
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS 180

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           W ++I G +QN   DEA+ L+ +M ++         +SVL ACT + L +LG Q+H  ++
Sbjct: 181 WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIV 240

Query: 301 KY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           K+    +  + NAL+ +Y + G+L  A  +FS+M ++D IS++++ISGLAQ G+S  AL+
Sbjct: 241 KWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQ 300

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAG 386
           LFE M++  +KP+ +T+  +L AC+  G
Sbjct: 301 LFEKMQLDCMKPDCVTVASLLSACASVG 328



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 11/203 (5%)

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGS 321
           M+  G  A+  T   +   C     L    ++H  + K  +D + +L + L+D+Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
           +++A+ +F  +   +V  W+ +ISGL     + + L LF  M    + P+  T   VL A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 382 CS--HAGFVEDGWNHFKSMKKFYGIDPGREHYSC--MIDLLGRAGKLQEAVKLIHEMPYE 437
           CS   A F      H K +   +G  P      C  +IDL  + G +  A KL+ E  + 
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSP----LVCNPLIDLYSKNGHVDLA-KLVFERLFL 175

Query: 438 PDAVTWRALLGACKVHRNTDLAI 460
            D+V+W A++     +   D AI
Sbjct: 176 KDSVSWVAMISGLSQNGREDEAI 198


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/612 (36%), Positives = 356/612 (58%), Gaps = 12/612 (1%)

Query: 40  SSLLDDFTR--FCYQR-DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           +S++  ++R  F ++  DL R M     M+   +  + VT   L+  CL    +   + +
Sbjct: 383 NSMIGAYSREGFVFETFDLLRKM----WMEEELMEVNEVTILNLLPACLEESELLSLRAL 438

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H + L   F+ +  + N  +  + K   L  A+ +F  M  ++V SW  +I  +      
Sbjct: 439 HGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDP 498

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSAL 213
            KAL+    M R G+ P+ F+  ++L AC  L +L   +++H  +++ G E + FV  +L
Sbjct: 499 IKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSL 558

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           + +Y    +       F  M  ++ V WN+++ G++QN   +EAL+L+++M   G   D+
Sbjct: 559 LSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDE 618

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSR 331
             + S+L AC+ L+ L LG +VH   LK     D  +  +L+DMY K G L  +  +F+R
Sbjct: 619 IAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNR 678

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           +  K+V SW+ MI+G   +G   +A++LFE MK S  +P+  T +GVL AC HAG V +G
Sbjct: 679 LNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEG 738

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
            N+   M+  Y ++P  EHY+C+ID+LGRAG+L EA+  I+EMP EPDA  W +LL +  
Sbjct: 739 LNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSI 798

Query: 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGC 511
            + + ++    A+K+L L+     +YILLSN+YA + KWD V  VR+ M+   + K+ GC
Sbjct: 799 TYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGC 858

Query: 512 SWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDS 571
           SWIE+  ++++F   ++S+P  D+I K    L +++V +GY PD + VL +LE  +K   
Sbjct: 859 SWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKI 918

Query: 572 IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHH 631
           ++ HSEK+AI FG ++  +G T+RI KNLRIC DCH  AK  +K   + IVIRD  R+HH
Sbjct: 919 LKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHH 978

Query: 632 FQDGNCSCGDYW 643
           F+ G CSCGDYW
Sbjct: 979 FKKGICSCGDYW 990



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/458 (29%), Positives = 213/458 (46%), Gaps = 43/458 (9%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEE 92
           N I+ NS  L+  F+   +  +  RA +++      G+  D  T   L+  C     V+ 
Sbjct: 275 NLISWNS--LIRGFSENGFWLEAYRAFRSLLE-SGDGLIPDVATMVTLLPVCSGEGNVDV 331

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
             ++H   +  G   E  + N L++M+ K   L EA +LF ++  ++VVSW +MI AY  
Sbjct: 332 GMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSR 391

Query: 153 AKMNDKALELL--IFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDV 207
                +  +LL  ++M  E +  N  T   +L AC     L+ LR LH   ++  F+   
Sbjct: 392 EGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKE 451

Query: 208 FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
            + +A I  YAK G L  AE VF  M T+ +  WN++IGG AQN D  +AL+ Y  M R 
Sbjct: 452 LINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRL 511

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDA 325
           G   D  ++ S+L AC  L LL+ G ++H  VL+   ++   +  +LL +Y  C      
Sbjct: 512 GILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYG 571

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
            + F RM  K+ + W+ M+SG +QN    EAL LF  M    ++P+ I I  +L ACS  
Sbjct: 572 RTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQL 631

Query: 386 ----------------GFVEDGW------------NHFKSMKKFYGIDPGRE--HYSCMI 415
                             +ED +                  ++ +    G+E   ++ MI
Sbjct: 632 SALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMI 691

Query: 416 DLLGRAGKLQEAVKLIHEMPY---EPDAVTWRALLGAC 450
              G  G+  +AV+L  +M     +PD  T+  +L AC
Sbjct: 692 TGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQAC 729



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 202/422 (47%), Gaps = 42/422 (9%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           + D+ T+  LIK C  +  +   K VH   +  G   + F+ N ++ ++ K   L+EA  
Sbjct: 207 QPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVE 266

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR--EGVRPNMFTYSAVLRACD-- 186
           LFD+MPE+N++SW ++I  + +     +A      +L   +G+ P++ T   +L  C   
Sbjct: 267 LFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGE 326

Query: 187 -SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
            ++ +   +H   +K+G   ++ V +ALID+Y+K G L  A  +F ++  + +V WNS+I
Sbjct: 327 GNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMI 386

Query: 246 GGFAQNSDVDEALNLYKR--MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-- 301
           G +++   V E  +L ++  M+      ++ T+ ++L AC   + L     +H + L+  
Sbjct: 387 GAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHS 446

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
           + +  ++NNA +  Y KCGSL  A  VF  M  K V SW+ +I G AQNG   +AL  + 
Sbjct: 447 FQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYF 506

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-----------------------HFKSM 398
            M    I P+  +IV +L AC   G ++ G                         +F   
Sbjct: 507 EMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCS 566

Query: 399 KKFYGI-------DPGREHYSCMIDLLGRAGKLQEAVKLIHEM---PYEPDAVTWRALLG 448
           K FYG        D     ++ M+    +     EA+ L  +M     EPD +   ++LG
Sbjct: 567 KPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILG 626

Query: 449 AC 450
           AC
Sbjct: 627 AC 628



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 187/357 (52%), Gaps = 15/357 (4%)

Query: 41  SLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAE-----LIKCCLARHAVEEAKL 95
           SLL++ ++ C   DL  A+  +     +    D     E     L KC   ++     KL
Sbjct: 70  SLLEEISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKL 129

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
                +S  F  +  L   L+ M+       E++++FD++  +N+  W  ++S Y   ++
Sbjct: 130 DEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNEL 189

Query: 156 NDKALELLIFMLR-EGVRPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRS 211
            D+A+   + ++     +P+ FT+  +++AC     + + + +H   +K+G   D+FV +
Sbjct: 190 YDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGN 249

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA--GF 269
           A+I +Y K G L  A  +F++MP ++L+ WNS+I GF++N    EA   ++ +  +  G 
Sbjct: 250 AMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGL 309

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMS 327
             D +T+ ++L  C+G   +++G  +H   +K    H+L++ NAL+DMY KCG L +A  
Sbjct: 310 IPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAI 369

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR--IKPNYITIVGVLFAC 382
           +F ++  K V+SW++MI   ++ G+  E   L   M +    ++ N +TI+ +L AC
Sbjct: 370 LFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 135/252 (53%), Gaps = 7/252 (2%)

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLY- 261
           F  D  + + LI +Y+  G    +  VF+ +  ++L  WN+++ G+ +N   DEA++ + 
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFL 198

Query: 262 KRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKC 319
           + +    F  D  T   +++ACTG   + LG  VH   +K     DL + NA++ +Y KC
Sbjct: 199 ELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKC 258

Query: 320 GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS--RIKPNYITIVG 377
           G L++A+ +F +M ++++ISW+++I G ++NG+  EA + F S+  S   + P+  T+V 
Sbjct: 259 GFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVT 318

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           +L  CS  G V+ G      M    G+       + +ID+  + G L EA  L  ++   
Sbjct: 319 LLPVCSGEGNVDVGM-VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIE-N 376

Query: 438 PDAVTWRALLGA 449
              V+W +++GA
Sbjct: 377 KSVVSWNSMIGA 388



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 103/211 (48%), Gaps = 10/211 (4%)

Query: 245 IGGFAQNSDVDEALNLYKRM--KRAGF--AADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           I    +  D++ AL+  +R     AG+  A  +  +  +L+ C     +E+G ++   + 
Sbjct: 75  ISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLC 134

Query: 301 ---KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
              ++  D +LN  L+ MY  CG   ++  VF R++ K++  W+ ++SG  +N    EA+
Sbjct: 135 VSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAI 194

Query: 358 KLF-ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
             F E + V+  +P+  T   ++ AC+    +  G      M    G+       + MI 
Sbjct: 195 HTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLG-KSVHGMAVKMGLIMDLFVGNAMIA 253

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           L G+ G L EAV+L  +MP E + ++W +L+
Sbjct: 254 LYGKCGFLDEAVELFDKMP-EQNLISWNSLI 283


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/620 (35%), Positives = 354/620 (57%), Gaps = 22/620 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLAR--HAVEEAKLVH 97
           +SL+  + R     ++ + +  MH     G+R ++ T    +K C     + V   K +H
Sbjct: 180 NSLITGYARVGAYEEMLKLLVKMHHT---GLRLNAFTLGSALKSCYLNLNNMVSYGKTLH 236

Query: 98  NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND 157
            + +  G + +  +   LL+M+ K   L +A  LF   P +NVV +  MI+ +   +  D
Sbjct: 237 GYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDID 296

Query: 158 K-----ALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFV 209
           K     AL+L   M R+G++P+ FT+S++++ C+ +      +Q+H  I K   +SD F+
Sbjct: 297 KECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFI 356

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
            S LI++Y+ LG   +    FN  P  D+V W ++I G+AQN   + AL L+  +  +G 
Sbjct: 357 GSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGK 416

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMS 327
             D+  +T++L AC  +A    G QVH + +K       I+ N+ + MY K G+L+ A  
Sbjct: 417 KPDEFIITTMLSACADVAAERSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLDSAKI 476

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
            F  +   DV+SWS MI   AQ+G++++A+ LFE MK   I PN IT +GVL ACSH G 
Sbjct: 477 TFEEIKNPDVVSWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACSHGGL 536

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           VE+G  +++SMKK Y +    +H +C++DLL RAG+L +A   I    +    V WR LL
Sbjct: 537 VEEGLRYYESMKKDYDMKINVKHCTCIVDLLSRAGRLLDAKNFILNSGFGDHPVMWRTLL 596

Query: 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507
             C+++++       A+K++ LDPQ+  +Y+LL NIY ++       ++R+ M+ RGI K
Sbjct: 597 SGCRIYKDIVTGKHVAEKLIELDPQESSSYVLLYNIYTDAGIDLPATKIRELMKDRGIRK 656

Query: 508 EPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQ 567
           EPG SWIEV  ++H+F V D SHP    I K L+ +++K   +GY       +Q++    
Sbjct: 657 EPGQSWIEVGNEVHSFVVGDISHPMSQIIYKKLEGMLEKKRKIGYIDQK---IQNVTIST 713

Query: 568 KED----SIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVI 623
           KE      + +HSEKLA+ FG++SL     +++ KNLR+C DCH   KL + +E + I++
Sbjct: 714 KEVKGTLGVNHHSEKLAVSFGIVSLPPSAPVKVMKNLRVCHDCHATMKLISVVEKREIIL 773

Query: 624 RDPIRYHHFQDGNCSCGDYW 643
           RD +R+HHF++G+CSC DYW
Sbjct: 774 RDSLRFHHFKEGSCSCNDYW 793



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 130/465 (27%), Positives = 221/465 (47%), Gaps = 21/465 (4%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           DSV Y +L++      +    KL H H++   F P  FL+N  LN++ K+  +  AQ LF
Sbjct: 8   DSVAYTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLF 67

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---I 189
           D+M ER+V+S+  +IS Y       KA+ L        ++ + F+Y+ VL AC  +    
Sbjct: 68  DRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFA 127

Query: 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           + + +H   I  G    VF+ + LID+Y K   + +A  +F      D V WNS+I G+A
Sbjct: 128 LGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYA 187

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC--TGLALLELGTQVHVHVLK--YDHD 305
           +    +E L L  +M   G   +  TL S L++C      ++  G  +H + +K   D D
Sbjct: 188 RVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLD 247

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN-----GYSQEALKLF 360
           +++  ALLDMY K G L DA+ +F     ++V+ ++ MI+G  Q        + EALKLF
Sbjct: 248 IVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLF 307

Query: 361 ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420
             M+   IKP+  T   ++  C+H    E G      + K + I       S +I+L   
Sbjct: 308 SQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICK-HNIQSDEFIGSTLIELYSL 366

Query: 421 AGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480
            G  ++ +K  +  P + D V+W  ++     +   + A+    ++L    + P  +I+ 
Sbjct: 367 LGSTEDQLKCFNSTP-KLDIVSWTTMIAGYAQNGQFESALALFYELL-ASGKKPDEFIIT 424

Query: 481 SNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEV--NKQIHAF 523
           + + A +    +VA  R   +  G   + G   + +  N QI  +
Sbjct: 425 TMLSACA----DVAAERSGEQVHGYAVKTGIGTLAIVQNSQISMY 465


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/563 (38%), Positives = 332/563 (58%), Gaps = 16/563 (2%)

Query: 96  VHNHVLSGGFEPETFLVNILLNM-HVKFS-LLEEAQVLFDQMPERNVVSWTTMISAYCDA 153
           +H H+L  G++    +   LLN   V  S  L  AQ++F ++      +W +MI  +  +
Sbjct: 24  IHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQS 83

Query: 154 KMNDKALELLIF---MLREG-VRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESD 206
             +   L+ ++F   ML     RP+ +T+S +L+AC+        R++H  II+ G++ D
Sbjct: 84  P-SPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQD 142

Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
           V + + LI  YA  G +  A  VF EMP RDLV WNS+I  + Q    +EAL +Y +M+ 
Sbjct: 143 VVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRI 202

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLED 324
           +    D  TL S+L +C  +  L +G Q+H      +   ++ + NAL+DMY KCGSL  
Sbjct: 203 SNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLAS 262

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           A+S+F+ M ++DV +W++MI G   +G   EA+  F SM ++ ++PN IT +G+L  CSH
Sbjct: 263 ALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSH 322

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
            G V++G  +F  M   + + PG +HY CM+DL GRAGKL+EA+++I   P + D V WR
Sbjct: 323 QGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWR 382

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
            LLG+CK+HRN ++   A + ++ L     G  +LLS IYA ++    VA +RK +++RG
Sbjct: 383 TLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRG 442

Query: 505 ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLE 564
           I   PG SWIEV  Q+H F V D SHP   +I + L+ +I +   VGYA + + ++   E
Sbjct: 443 IKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAPE 502

Query: 565 GEQK----EDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQT 620
              +    E S  YHSEKLAI +GL    +G ++ I KNLR+C DCH F K  +   ++ 
Sbjct: 503 SNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFTKFVSMAFDRE 562

Query: 621 IVIRDPIRYHHFQDGNCSCGDYW 643
           I++RD +R+HHF+ G+CSC ++W
Sbjct: 563 IIVRDRVRFHHFKGGHCSCKEFW 585



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 168/327 (51%), Gaps = 21/327 (6%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPRAMKAM----HAMQCHGVRADSVTYAELIKCCLARH 88
           N  T   +S++  F+    Q   P  ++A+    H +     R D+ T++ L+K C    
Sbjct: 67  NPQTPAWNSMIRGFS----QSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKAC--EE 120

Query: 89  AVEEAKL--VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTM 146
           A EE K   VH  ++  G++ +  L   L+  +    L+E A  +F++MP R++VSW +M
Sbjct: 121 AKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSM 180

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGF 203
           IS YC   ++++AL++   M    V  + FT  ++L +C  +  L    Q+H    +   
Sbjct: 181 ISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRL 240

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
             ++FV +ALID+YAK G L +A  +FN MP RD+  WNS+I G+  +   DEA+  +  
Sbjct: 241 VENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGS 300

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKC 319
           M  AG   +  T   +L  C+   L++ G Q + H++  + +L         ++D++ + 
Sbjct: 301 MLMAGVRPNSITFLGLLCGCSHQGLVKEGVQ-YFHMMSSEFNLKPGIKHYGCMVDLFGRA 359

Query: 320 GSLEDAMSVF-SRMIQKDVISWSTMIS 345
           G L++A+ V  S   Q D + W T++ 
Sbjct: 360 GKLKEALEVIRSSPSQHDPVLWRTLLG 386



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 149/291 (51%), Gaps = 15/291 (5%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRD 237
           ++L+ C+S+  L ++H  I+  G++ +  +   L++  A    G L  A+ VF+ +    
Sbjct: 10  SLLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQ 69

Query: 238 LVVWNSIIGGFAQNSDV--DEALNLYKRMKRAGFA-ADQSTLTSVLRACTGLALLELGTQ 294
              WNS+I GF+Q+      +A+  Y  M  A  A  D  T + +L+AC          +
Sbjct: 70  TPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCRE 129

Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
           VH  +++  YD D++L   L+  Y   G +E A  VF  M  +D++SW++MIS   Q G 
Sbjct: 130 VHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGL 189

Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY- 411
            +EALK+++ M++S +  +  T+V +L +C+H G +  G      M +F G     E+  
Sbjct: 190 HEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMG----VQMHRFAGERRLVENIF 245

Query: 412 --SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
             + +ID+  + G L  A+ + + MP + D  TW +++    VH   D AI
Sbjct: 246 VGNALIDMYAKCGSLASALSIFNSMP-KRDVFTWNSMIVGYGVHGRGDEAI 295



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 117/288 (40%), Gaps = 44/288 (15%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           +C       A+K    M+   V  D  T   L+  C    A+     +H           
Sbjct: 184 YCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVEN 243

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
            F+ N L++M+ K   L  A  +F+ MP+R+V +W +MI  Y      D+A+     ML 
Sbjct: 244 IFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLM 303

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRS------------ALIDI 216
            GVRPN  T+  +L  C         H G++K G +    + S             ++D+
Sbjct: 304 AGVRPNSITFLGLLCGCS--------HQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDL 355

Query: 217 YAKLGELRNAECVFNEMPTR-DLVVWNSIIGG--FAQNSDVDE----------ALNLYKR 263
           + + G+L+ A  V    P++ D V+W +++G     +N ++ E          +L     
Sbjct: 356 FGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDC 415

Query: 264 MKRAGFAADQSTLTSVLR-----------ACTGLALLELGTQVHVHVL 300
           +  +G  A+   L  V R              G + +E+G QVH  V+
Sbjct: 416 VLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVV 463


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/612 (36%), Positives = 356/612 (58%), Gaps = 12/612 (1%)

Query: 40  SSLLDDFTR--FCYQR-DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           +S++  ++R  F ++  DL R M     M+   +  + VT   L+  CL    +   + +
Sbjct: 383 NSMIGAYSREGFVFETFDLLRKM----WMEEELMEVNEVTILNLLPACLEESELLSLRAL 438

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H + L   F+ +  + N  +  + K   L  A+ +F  M  ++V SW  +I  +      
Sbjct: 439 HGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDP 498

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSAL 213
            KAL+    M R G+ P+ F+  ++L AC  L +L   +++H  +++ G E + FV  +L
Sbjct: 499 IKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSL 558

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           + +Y    +       F  M  ++ V WN+++ G++QN   +EAL+L+++M   G   D+
Sbjct: 559 LSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDE 618

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSR 331
             + S+L AC+ L+ L LG +VH   LK     D  +  +L+DMY K G L  +  +F+R
Sbjct: 619 IAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNR 678

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           +  K+V SW+ MI+G   +G   +A++LFE MK S  +P+  T +GVL AC HAG V +G
Sbjct: 679 LNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEG 738

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
            N+   M+  Y ++P  EHY+C+ID+LGRAG+L EA+  I+EMP EPDA  W +LL +  
Sbjct: 739 LNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSI 798

Query: 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGC 511
            + + ++    A+K+L L+     +YILLSN+YA + KWD V  VR+ M+   + K+ GC
Sbjct: 799 TYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGC 858

Query: 512 SWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDS 571
           SWIE+  ++++F   ++S+P  D+I K    L +++V +GY PD + VL +LE  +K   
Sbjct: 859 SWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKI 918

Query: 572 IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHH 631
           ++ HSEK+AI FG ++  +G T+RI KNLRIC DCH  AK  +K   + IVIRD  R+HH
Sbjct: 919 LKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHH 978

Query: 632 FQDGNCSCGDYW 643
           F+ G CSCGDYW
Sbjct: 979 FKKGICSCGDYW 990



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 133/458 (29%), Positives = 212/458 (46%), Gaps = 43/458 (9%)

Query: 33  NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEE 92
           N I+ NS  L+  F+   +  +  RA +++      G+  D  T   L+  C     V+ 
Sbjct: 275 NLISWNS--LIRGFSENGFWLEAYRAFRSLLE-SGDGLIPDVATMVTLLPVCSGEGNVDV 331

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
             ++H   +  G   E  + N L++M+ K   L EA +LF ++  ++VVSW +MI AY  
Sbjct: 332 GMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSR 391

Query: 153 AKMNDKALELL--IFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDV 207
                +  +LL  ++M  E +  N  T   +L AC     L+ LR LH   ++  F+   
Sbjct: 392 EGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKE 451

Query: 208 FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267
            + +A I  YAK G L  AE VF  M T+ +  WN++IGG AQN D  +AL+ Y  M R 
Sbjct: 452 LINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRL 511

Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDA 325
           G   D  ++ S+L AC  L LL+ G ++H  VL+   ++   +  +LL +Y  C      
Sbjct: 512 GILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYG 571

Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
            + F  M  K+ + W+ M+SG +QN    EAL LF  M    ++P+ I I  +L ACS  
Sbjct: 572 RTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQL 631

Query: 386 ----------------GFVEDGW------------NHFKSMKKFYGIDPGRE--HYSCMI 415
                             +ED +                  ++ +    G+E   ++ MI
Sbjct: 632 SALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMI 691

Query: 416 DLLGRAGKLQEAVKLIHEMPY---EPDAVTWRALLGAC 450
              G  G+  +AV+L  +M     +PD  T+  +L AC
Sbjct: 692 TGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQAC 729



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 202/422 (47%), Gaps = 42/422 (9%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           + D+ T+  LIK C  +  +   K VH   +  G   + F+ N ++ ++ K   L+EA  
Sbjct: 207 QPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVE 266

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR--EGVRPNMFTYSAVLRACD-- 186
           LFD+MPE+N++SW ++I  + +     +A      +L   +G+ P++ T   +L  C   
Sbjct: 267 LFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGE 326

Query: 187 -SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
            ++ +   +H   +K+G   ++ V +ALID+Y+K G L  A  +F ++  + +V WNS+I
Sbjct: 327 GNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMI 386

Query: 246 GGFAQNSDVDEALNLYKR--MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-- 301
           G +++   V E  +L ++  M+      ++ T+ ++L AC   + L     +H + L+  
Sbjct: 387 GAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHS 446

Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
           + +  ++NNA +  Y KCGSL  A  VF  M  K V SW+ +I G AQNG   +AL  + 
Sbjct: 447 FQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYF 506

Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-----------------------HFKSM 398
            M    I P+  +IV +L AC   G ++ G                         +F   
Sbjct: 507 EMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCS 566

Query: 399 KKFYGI-------DPGREHYSCMIDLLGRAGKLQEAVKLIHEM---PYEPDAVTWRALLG 448
           K FYG        D     ++ M+    +     EA+ L  +M     EPD +   ++LG
Sbjct: 567 KPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILG 626

Query: 449 AC 450
           AC
Sbjct: 627 AC 628



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 187/357 (52%), Gaps = 15/357 (4%)

Query: 41  SLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAE-----LIKCCLARHAVEEAKL 95
           SLL++ ++ C   DL  A+  +     +    D     E     L KC   ++     KL
Sbjct: 70  SLLEEISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKL 129

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
                +S  F  +  L   L+ M+       E++++FD++  +N+  W  ++S Y   ++
Sbjct: 130 DEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNEL 189

Query: 156 NDKALELLIFMLR-EGVRPNMFTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRS 211
            D+A+   + ++     +P+ FT+  +++AC     + + + +H   +K+G   D+FV +
Sbjct: 190 YDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGN 249

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA--GF 269
           A+I +Y K G L  A  +F++MP ++L+ WNS+I GF++N    EA   ++ +  +  G 
Sbjct: 250 AMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGL 309

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMS 327
             D +T+ ++L  C+G   +++G  +H   +K    H+L++ NAL+DMY KCG L +A  
Sbjct: 310 IPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAI 369

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR--IKPNYITIVGVLFAC 382
           +F ++  K V+SW++MI   ++ G+  E   L   M +    ++ N +TI+ +L AC
Sbjct: 370 LFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 135/252 (53%), Gaps = 7/252 (2%)

Query: 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLY- 261
           F  D  + + LI +Y+  G    +  VF+ +  ++L  WN+++ G+ +N   DEA++ + 
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFL 198

Query: 262 KRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKC 319
           + +    F  D  T   +++ACTG   + LG  VH   +K     DL + NA++ +Y KC
Sbjct: 199 ELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKC 258

Query: 320 GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS--RIKPNYITIVG 377
           G L++A+ +F +M ++++ISW+++I G ++NG+  EA + F S+  S   + P+  T+V 
Sbjct: 259 GFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVT 318

Query: 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437
           +L  CS  G V+ G      M    G+       + +ID+  + G L EA  L  ++   
Sbjct: 319 LLPVCSGEGNVDVGM-VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIE-N 376

Query: 438 PDAVTWRALLGA 449
              V+W +++GA
Sbjct: 377 KSVVSWNSMIGA 388



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 103/211 (48%), Gaps = 10/211 (4%)

Query: 245 IGGFAQNSDVDEALNLYKRM--KRAGF--AADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           I    +  D++ AL+  +R     AG+  A  +  +  +L+ C     +E+G ++   + 
Sbjct: 75  ISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLC 134

Query: 301 ---KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
              ++  D +LN  L+ MY  CG   ++  VF R++ K++  W+ ++SG  +N    EA+
Sbjct: 135 VSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAI 194

Query: 358 KLF-ESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
             F E + V+  +P+  T   ++ AC+    +  G      M    G+       + MI 
Sbjct: 195 HTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLG-KSVHGMAVKMGLIMDLFVGNAMIA 253

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447
           L G+ G L EAV+L  +MP E + ++W +L+
Sbjct: 254 LYGKCGFLDEAVELFDKMP-EQNLISWNSLI 283


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/574 (37%), Positives = 338/574 (58%), Gaps = 39/574 (6%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           DS ++A L+K      A+     +H   +  G +   F+   L++M+ + + L  A+ +F
Sbjct: 105 DSFSFAFLLKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVF 164

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192
           D+M E N+V+W  +++A                   EGV+             D+  + R
Sbjct: 165 DEMIEPNIVAWNAIVAACFRC---------------EGVK-------------DAEQVFR 196

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
              C  I+     ++   + ++  Y K GEL+ A  VF +MP +D V W+++I GFA N 
Sbjct: 197 ---CMPIR-----NLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNG 248

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNN 310
           + ++A   ++ ++R G   ++ +LT VL AC      E G  +H  V K  +   + +NN
Sbjct: 249 NFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNN 308

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           AL+D Y KCG+L+ A  VF  M+++  +SW+ MI+G+A +GY +EA++LF  M+ S IKP
Sbjct: 309 ALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKP 368

Query: 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430
           + IT + +L+ACSHAG V+ G ++F  M   YGI+P  EHY CM+DL GRAGKLQ+A   
Sbjct: 369 DSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDF 428

Query: 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490
           + +MP  P+ + WR LLGAC +H N  LA    +++  LDP++ G ++LLSNIYA + KW
Sbjct: 429 VCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKW 488

Query: 491 DEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL-VG 549
            +VA +R++M  + + K PG S IEVN+ I++F   +  +    + ++ L+ ++ +L + 
Sbjct: 489 KDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIE 548

Query: 550 VGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTF 609
            GY P+   VL D+E E+KEDS+  HSEKLA+ FG+  L +G+ IR+ KNLRIC DCHT 
Sbjct: 549 GGYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRICRDCHTV 608

Query: 610 AKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KL +K+    IV+RD  R+H F  G+CSC DYW
Sbjct: 609 MKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 176/390 (45%), Gaps = 57/390 (14%)

Query: 111 LVNILLNMHVKFSL---LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           LV+  L +H   +L   L  A+ LF  +   +V  + T+I    D+     AL+L + M 
Sbjct: 38  LVSGKLLLHCAVTLPDSLHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMR 97

Query: 168 REGVR-PNMFTYSAVLRA---CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL 223
           R+ V  P+ F+++ +L+A   C +L    QLHC  +  G +S +FV + LI +YA+   L
Sbjct: 98  RKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACL 157

Query: 224 RNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
             A  VF+EM   ++V WN+I+    +   V +A  +++ M               +R  
Sbjct: 158 VFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMP--------------IRNL 203

Query: 284 TGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTM 343
           T                         N +L  Y K G L+ A  VF +M  KD +SWSTM
Sbjct: 204 TSW-----------------------NIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTM 240

Query: 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG--WNHFKSMKKF 401
           I G A NG   +A   F  ++   ++PN +++ GVL AC+ AG  E G   + F     F
Sbjct: 241 IVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGF 300

Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
             I       + +ID   + G L  A +L+ +      AV+W A++    +H   + AI 
Sbjct: 301 LQIISVN---NALIDTYSKCGNLDMA-RLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAI- 355

Query: 462 AAKKILNLDPQD---PGTYILLSNIYANSQ 488
              ++ N   +    P +   +S +YA S 
Sbjct: 356 ---RLFNEMEESNIKPDSITFISILYACSH 382



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 144/349 (41%), Gaps = 56/349 (16%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           F +  +   A      ++  G+R + V+   ++  C    A E  +++H  V   GF   
Sbjct: 244 FAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQI 303

Query: 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR 168
             + N L++ + K   L+ A+++FD M  R+ VSWT MI+        ++A+ L   M  
Sbjct: 304 ISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEE 363

Query: 169 EGVRPNMFTYSAVLRACDSLIILRQLHCG-----IIKVGFESDVFVRSALIDIYAKLGEL 223
             ++P+  T+ ++L AC S   L  L C      +   G E  +     ++D+Y + G+L
Sbjct: 364 SNIKPDSITFISILYAC-SHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKL 422

Query: 224 RNAECVFNEMP-TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
           + A     +MP + + +VW +++G                                   A
Sbjct: 423 QQAYDFVCQMPISPNDIVWRTLLG-----------------------------------A 447

Query: 283 CTGLALLELGTQVHVHVLKYDHDLILNNALL-DMYCKCGSLEDAMSVFSRMIQ---KDVI 338
           C+    L L  QV   + + D +   ++ LL ++Y   G  +D  ++   M     K   
Sbjct: 448 CSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTP 507

Query: 339 SWS---------TMISGLAQNGYSQEA-LKLFESMKVSRIKPNYITIVG 377
            WS         + ++G  QN  + EA  KL E M   RI+  Y+  VG
Sbjct: 508 GWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIEGGYVPEVG 556


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/585 (36%), Positives = 336/585 (57%), Gaps = 38/585 (6%)

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H  ++  G         +L++ + K  LL + ++LFD+ P R++  ++++++A   ++  
Sbjct: 26  HARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSHSESP 85

Query: 157 DKALELLIFMLR-EGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSA 212
           +  L LL  ML  + +RP+ F  +++  A     SL + +QLH   +   + SD  V+S+
Sbjct: 86  ELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVKSS 145

Query: 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-------- 264
           LID+Y K G   +A  VF+ +  ++ V+W ++I G+  N   DEAL L++ M        
Sbjct: 146 LIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGRTLFAW 205

Query: 265 -----------------------KRAGFAADQS-TLTSVLRACTGLALLELGTQVHVHVL 300
                                  +R G + D +  L+S +     LA   LG Q+H   +
Sbjct: 206 TALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSLTM 265

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
           +  +   +I+ NA++DMY KC  +  A  VF  +  +D+ISW+TM+ G AQ+G ++EA  
Sbjct: 266 RLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFS 325

Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
           L++ M ++ +KPN +T VG+++ACSHAG V+ G   F SMK  YGI+P  +HY+C +DLL
Sbjct: 326 LYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTCYLDLL 385

Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
            R+G L EA +LI  MPY PD  TW +LL ACK + N +++I  A  +L L P+ P TY+
Sbjct: 386 SRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLELRPKYPSTYV 445

Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
           LLSN+YA + KWD V  VRK M    I KEPG SWIEV ++   F+  +      ++I  
Sbjct: 446 LLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAGEVPIDLREEILG 505

Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRK 598
            L+ L+ ++   GY PDT+ V+ DLE  +KE  +  HSE+LA+ FG++    G  IR+ K
Sbjct: 506 FLEELVSEMRQRGYVPDTSSVMHDLEEHEKEHHLCLHSERLAVAFGILRSPLGSVIRVVK 565

Query: 599 NLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           NLR+C DCHT  K  +++  + I++RD  R+HHF+ G CSC ++W
Sbjct: 566 NLRVCNDCHTVMKFISEIFQRKIIVRDASRFHHFEGGKCSCSEFW 610



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 198/435 (45%), Gaps = 68/435 (15%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           +    +R D    A +        ++   K +H H ++  +  +  + + L++M+ K  +
Sbjct: 96  LSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGV 155

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALE----------------------- 161
            ++A+ +FD +  +N V WT +IS Y     +D+ALE                       
Sbjct: 156 PDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGRTLFAWTALISGFVRS 215

Query: 162 --------LLIFMLREGVR-PNMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFV 209
                   L + M R+GV   + F  S+ +     L   ++ RQLH   +++GF S + V
Sbjct: 216 GESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSLTMRLGFSSSMIV 275

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
            +A++D+Y+K  ++ +A  VF E+  RD++ W +++ G AQ+   +EA +LY RM  AG 
Sbjct: 276 GNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMVLAGV 335

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNAL------LDMYCKCGSLE 323
             ++ T   ++ AC+   L++ G Q+    +K ++   +N  L      LD+  + G L 
Sbjct: 336 KPNEVTFVGLIYACSHAGLVQKGRQL-FDSMKGEYG--INPRLQHYTCYLDLLSRSGHLA 392

Query: 324 DAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382
           +A  + + M    D  +W++++S   +   ++ ++++ +++    ++P Y +   +L   
Sbjct: 393 EAEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLL--ELRPKYPSTYVLL--- 447

Query: 383 SHAGFVEDGWNHFKSMKKFYG------------IDPGREHY-----SCMIDLLGRA-GKL 424
           S+   V   W+   +++K               I+ GRE          IDL     G L
Sbjct: 448 SNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAGEVPIDLREEILGFL 507

Query: 425 QEAVKLIHEMPYEPD 439
           +E V  + +  Y PD
Sbjct: 508 EELVSEMRQRGYVPD 522



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 95/176 (53%), Gaps = 3/176 (1%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           LR+ H  +IK G        + L+  YAK   L +   +F+E P RDL +++S++   + 
Sbjct: 22  LRRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSH 81

Query: 251 NSDVDEALNLYKRMKRA-GFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLI 307
           +   +  L L +RM  A     D   L S+  A   L  L LG Q+H H +   Y  D +
Sbjct: 82  SESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDV 141

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
           + ++L+DMYCKCG  +DA  VF  ++ K+ + W+ +ISG   NG S EAL+LF SM
Sbjct: 142 VKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSM 197


>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 566

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/532 (40%), Positives = 323/532 (60%), Gaps = 13/532 (2%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYC---DAKMNDKALELLIFMLREGV---RPNMFTY 178
           L  A++L +  P  N   + T+I AY    +   + +AL L IFML+      +P+ FTY
Sbjct: 35  LNYARLLLNTNPSLNSYYYNTIIRAYSHTSNPTHHFQALSLFIFMLQPHTNVPKPDTFTY 94

Query: 179 SAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235
           S  L++C  L +    +QLH  I K+GF  D+++++ALI +Y+++GEL  A  VF+ M  
Sbjct: 95  SFALKSCGRLKLTQQAKQLHGFINKMGFGFDLYIQNALIHMYSEIGELVIARQVFDRMSH 154

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
           RD+V W S+I GF  +    EA+ L++RM   G   +++T+ SVLR C     L +G +V
Sbjct: 155 RDVVSWTSMIAGFVNHHLTVEAIQLFQRMLEVGVDVNEATVISVLRGCADSGALSVGRKV 214

Query: 296 HVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H  V +   D   N   AL+ MY KCG LE A  VF  ++ +DV  W+ MI GLA +G  
Sbjct: 215 HGIVKEKGIDFKANVCTALIHMYSKCGCLESAREVFDDVLDRDVFVWTAMIYGLACHGMC 274

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
           +EA++LF  M+   +KP+  TI+ VL A  +AG V +G+  F  ++K Y + P  +H+ C
Sbjct: 275 KEAIELFLEMETCNVKPDERTIMVVLSAYRNAGLVREGYMFFNDVQKRYSMKPNIKHFGC 334

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAK--KILNLDP 471
           M+DLL + G L+EA   I+ MP +PDAV WR L+ ACKVH +T+ A    K  ++  +  
Sbjct: 335 MVDLLAKGGCLEEAEDFINAMPMKPDAVIWRTLIWACKVHADTERAERLMKHLELQGMSA 394

Query: 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHP 531
            D G+YIL SN+YA++ KW + AEVR+ M  +G+ K PG S IEV+  +H F + D  HP
Sbjct: 395 HDSGSYILASNVYASTGKWCDKAEVRELMNKKGLVKPPGSSRIEVDGVVHEFVMGDYDHP 454

Query: 532 QIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQG 591
             +KI   L  ++ KL   GY P  + V+ +++ E+K   + +HSEKLA+ +GL+    G
Sbjct: 455 DTEKIFIKLDQMVDKLRKEGYNPKVSEVMLEMDDEEKAIQLLHHSEKLALAYGLIRTCPG 514

Query: 592 KTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
             IRI KNLR C DCH F KL +K+  + I++RD IR+HHF++G+CSC DYW
Sbjct: 515 SKIRIVKNLRSCEDCHEFMKLISKVYQRDIIVRDRIRFHHFKNGDCSCKDYW 566



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 157/302 (51%), Gaps = 7/302 (2%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           + D+ TY+  +K C      ++AK +H  +   GF  + ++ N L++M+ +   L  A+ 
Sbjct: 88  KPDTFTYSFALKSCGRLKLTQQAKQLHGFINKMGFGFDLYIQNALIHMYSEIGELVIARQ 147

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DS 187
           +FD+M  R+VVSWT+MI+ + +  +  +A++L   ML  GV  N  T  +VLR C    +
Sbjct: 148 VFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQLFQRMLEVGVDVNEATVISVLRGCADSGA 207

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L + R++H  + + G +    V +ALI +Y+K G L +A  VF+++  RD+ VW ++I G
Sbjct: 208 LSVGRKVHGIVKEKGIDFKANVCTALIHMYSKCGCLESAREVFDDVLDRDVFVWTAMIYG 267

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDH 304
            A +    EA+ L+  M+      D+ T+  VL A     L+  G      V K      
Sbjct: 268 LACHGMCKEAIELFLEMETCNVKPDERTIMVVLSAYRNAGLVREGYMFFNDVQKRYSMKP 327

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESM 363
           ++     ++D+  K G LE+A    + M ++ D + W T+I     +  ++ A +L + +
Sbjct: 328 NIKHFGCMVDLLAKGGCLEEAEDFINAMPMKPDAVIWRTLIWACKVHADTERAERLMKHL 387

Query: 364 KV 365
           ++
Sbjct: 388 EL 389



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 141/299 (47%), Gaps = 13/299 (4%)

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           QLH   IK   + + F +       +  G+L  A  + N  P+ +   +N+II  ++  S
Sbjct: 6   QLHAQFIKSQNQRN-FSKLFTFAAQSPSGDLNYARLLLNTNPSLNSYYYNTIIRAYSHTS 64

Query: 253 DVD---EALNLYKRMKRAGF---AADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDH 304
           +     +AL+L+  M +        D  T +  L++C  L L +   Q+H  ++ + +  
Sbjct: 65  NPTHHFQALSLFIFMLQPHTNVPKPDTFTYSFALKSCGRLKLTQQAKQLHGFINKMGFGF 124

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           DL + NAL+ MY + G L  A  VF RM  +DV+SW++MI+G   +  + EA++LF+ M 
Sbjct: 125 DLYIQNALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQLFQRML 184

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
              +  N  T++ VL  C+ +G +  G      + K  GID      + +I +  + G L
Sbjct: 185 EVGVDVNEATVISVLRGCADSGALSVG-RKVHGIVKEKGIDFKANVCTALIHMYSKCGCL 243

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI--CAAKKILNLDPQDPGTYILLS 481
           + A ++  ++  + D   W A++     H     AI      +  N+ P +    ++LS
Sbjct: 244 ESAREVFDDV-LDRDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVVLS 301



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 8/225 (3%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           GV  +  T   +++ C    A+   + VH  V   G + +  +   L++M+ K   LE A
Sbjct: 187 GVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGIDFKANVCTALIHMYSKCGCLESA 246

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
           + +FD + +R+V  WT MI       M  +A+EL + M    V+P+  T   VL A  + 
Sbjct: 247 REVFDDVLDRDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVVLSAYRNA 306

Query: 189 IILRQLHCGIIKV----GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNS 243
            ++R+ +     V      + ++     ++D+ AK G L  AE   N MP + D V+W +
Sbjct: 307 GLVREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMKPDAVIWRT 366

Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQS---TLTSVLRACTG 285
           +I     ++D + A  L K ++  G +A  S    L S + A TG
Sbjct: 367 LIWACKVHADTERAERLMKHLELQGMSAHDSGSYILASNVYASTG 411


>gi|356544972|ref|XP_003540920.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Glycine max]
          Length = 622

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/588 (36%), Positives = 344/588 (58%), Gaps = 15/588 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            +  +  + C     D   Y  L+K C     ++E KLVH H+ +  F+ +  + N +L 
Sbjct: 48  GLHVLDLIDCGSFELDLTLYNTLLKRCTQLGKLKEGKLVHFHMFNSKFKDDLVIQNFVLF 107

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ +   L++ Q +F++  ++++V+WT+MIS Y   +     L L   +L EG + N F 
Sbjct: 108 MYARCGNLKDTQHVFNEKLQKDMVTWTSMISGYAQNERAKDTLVLFPRILSEGTKLNXFI 167

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
            S+++            H      G  S+VFV S+L+++ A+ G L     VF+    ++
Sbjct: 168 LSSLI------------HASCWMYGCHSNVFVGSSLVNMXARCGYLGEEXLVFDNSWCKN 215

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
            V WN++IGG+A+  + +EAL LY RM+   +   Q T + +L +   +  LE G  +  
Sbjct: 216 EVSWNALIGGYAKKGEGEEALALYLRMQMEAYKPIQFTYSGILSSYLSMGCLEQGKWLLA 275

Query: 298 HVLKYDHDLIL--NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           H++K    L++   N LL MY K G + D    F ++++ DV+S ++M++  AQ+G  +E
Sbjct: 276 HLMKPGQKLVVYVGNTLLHMYAKLGKIRDVEKFFDKLVKVDVVSCNSMLTRYAQHGLGKE 335

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           A++ FE M    I+PN IT++ VL +CSHA  +++G ++F  M+K Y I+P   HY+ +I
Sbjct: 336 AMQQFEEMISFGIEPNDITVLFVLSSCSHARLLDEGKHYFGLMRK-YSIEPKVSHYATII 394

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           DLLG AG L +A   I EMP EP      ALLG  K+H+NT +   AA+++  L+P   G
Sbjct: 395 DLLGXAGLLDQAESFIEEMPIEPIVAIXGALLGDSKMHKNTKMGAYAAQQVFELNPSCRG 454

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
           T+ LL N+YA++ +W +VA+V K M+  G+ KEP CS +E+   +H F   D++HPQ +K
Sbjct: 455 THTLLVNMYASAGRWGDVAKVIKIMKDSGVKKEPTCSXVEIENSVHVFVANDAAHPQKEK 514

Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
           I+K  + L QK+  +GY PDT++VL  ++ ++KE + QYH+EKLA+    ++     T R
Sbjct: 515 IHKMWEKLNQKIKEIGYVPDTSHVLLFVDQQEKELNFQYHTEKLALTLAFLNTPPRSTTR 574

Query: 596 IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           I KN+R+ GDCH+     A +  + I++RD  R+HHF+DG CSCGDYW
Sbjct: 575 IMKNIRVSGDCHSSINYVALVVKREIIVRDTNRFHHFRDGFCSCGDYW 622


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/527 (38%), Positives = 326/527 (61%), Gaps = 6/527 (1%)

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
           S +  A+ LF+ M E ++V + +M   Y       +   L + +L +G+ P+ +T+ ++L
Sbjct: 77  SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLL 136

Query: 183 RACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
           +AC     L   RQLHC  +K+G + +V+V   LI++Y +  ++ +A  VF+ +    +V
Sbjct: 137 KACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVV 196

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV 299
            +N++I G+A+ +  +EAL+L++ M+      ++ TL SVL +C  L  L+LG  +H + 
Sbjct: 197 CYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYA 256

Query: 300 LKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
            K+     + +N AL+DM+ KCGSL+DA+S+F +M  KD  +WS MI   A +G +++++
Sbjct: 257 KKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSM 316

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
            +FE M+   ++P+ IT +G+L ACSH G VE+G  +F  M   +GI P  +HY  M+DL
Sbjct: 317 LMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDL 376

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           L  AG L++A + I ++P  P  + WR LL AC  H N DLA   +++I  LD    G Y
Sbjct: 377 LSXAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDY 436

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           ++LSN+YA ++KW+ V  +RK M+ R   K PGCS IEVN  +H F   D       K++
Sbjct: 437 VILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLH 496

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQ-DLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRI 596
           + L  ++++L   GY PDT+ V+  ++  ++KE +++YHSEKLAI FGL++   G TIR+
Sbjct: 497 RALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRV 556

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KNLR+C DCH  AKL + +  + +V RD  R+HHF+DG CSCGD+W
Sbjct: 557 VKNLRVCRDCHNAAKLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 152/302 (50%), Gaps = 7/302 (2%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G+  D+ T+  L+K C    A+EE + +H   +  G +   ++   L+NM+ +   ++ A
Sbjct: 124 GILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSA 183

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC--- 185
           + +FD++ E  VV +  MI+ Y      ++AL L   M  + ++PN  T  +VL +C   
Sbjct: 184 RXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALL 243

Query: 186 DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
            SL + + +H    K  F   V V +ALID++AK G L +A  +F +M  +D   W+++I
Sbjct: 244 GSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMI 303

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL-KYD- 303
             +A +   ++++ +++RM+      D+ T   +L AC+    +E G +    ++ K+  
Sbjct: 304 VAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGI 363

Query: 304 -HDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFE 361
              +    +++D+    G+LEDA     ++ I    + W  +++  + +     A K+ E
Sbjct: 364 VPSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSE 423

Query: 362 SM 363
            +
Sbjct: 424 RI 425



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/219 (19%), Positives = 102/219 (46%), Gaps = 6/219 (2%)

Query: 52  QRDLP-RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           +R+ P  A+     MQ   ++ + +T   ++  C    +++  K +H +     F     
Sbjct: 207 RRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVK 266

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG 170
           +   L++M  K   L++A  +F++M  ++  +W+ MI AY +    +K++ +   M  E 
Sbjct: 267 VNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSEN 326

Query: 171 VRPNMFTYSAVLRACDSLIILRQ----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           V+P+  T+  +L AC     + +        + K G    +    +++D+ +  G L +A
Sbjct: 327 VQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDA 386

Query: 227 ECVFNEMPTRDL-VVWNSIIGGFAQNSDVDEALNLYKRM 264
               +++P     ++W  ++   + ++++D A  + +R+
Sbjct: 387 YEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERI 425


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/631 (36%), Positives = 347/631 (54%), Gaps = 53/631 (8%)

Query: 19  RQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPR--AMKAMHAMQCHGVRADSVT 76
           R F  T  P V   NT+ R             Y+ D P+   +K +   +      DS +
Sbjct: 60  RLFRYTPNPDVFMHNTLIRG-----------LYESDRPQDSLLKFIEMRRNSFSPPDSFS 108

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
           +A ++K      +V     +H   L  G +   F+   L++M+ +   +  A+ +FD+MP
Sbjct: 109 FAFIVKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMP 168

Query: 137 ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHC 196
           E N ++W  M++A C         EL   M    VR N+ +++ +L              
Sbjct: 169 EPNAIAWNAMVTACCRGGDMKGGRELFDLM---PVR-NLMSWNVMLAG------------ 212

Query: 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDE 256
                               Y K GEL  A  +F EMP +D V W+++I GFA N   +E
Sbjct: 213 --------------------YTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEE 252

Query: 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLIL--NNALLD 314
           A + ++ ++R G   ++++LT VL AC     LE G  +H  + K     I+  NNALLD
Sbjct: 253 AFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLD 312

Query: 315 MYCKCGSLEDAMSVFSRMI-QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
            Y KCG++  A  VF R++ +++++SW++M++ LA +G+ +EA+ +F  M+ S I+P+ I
Sbjct: 313 TYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEI 372

Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
             + +L+ACSHAG VE G  +F  MK  Y I+P  EHY CM+DL GRAG+LQ+A + + +
Sbjct: 373 AFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQ 432

Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
           MP    A+ WR LLGAC +H +  LA    +++  LDP +   ++LLSN YA + KW + 
Sbjct: 433 MPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDA 492

Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL-VGVGY 552
           A VR++M  + ITK PG S IEV+K ++ F      +   ++  K LK +I++L V  GY
Sbjct: 493 ASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKEIIRRLRVEGGY 552

Query: 553 APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
            P+   VL D+E E+KE S+  HSEKLA+ FG+  L +G+TIRI KNLRIC DCH   KL
Sbjct: 553 VPEIGRVLHDIEEEEKEGSVSVHSEKLAVAFGIARLCKGRTIRIVKNLRICRDCHAVMKL 612

Query: 613 TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +++    IV+RD  R+H F+DG CSC DYW
Sbjct: 613 ISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW 643



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 145/326 (44%), Gaps = 40/326 (12%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA-KLGELRNAEC-VFNEMPTRD 237
           ++L  C SL   +Q+H  ++K+G ESD F+   L+   A  L +  +  C +F   P  D
Sbjct: 10  SLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPD 69

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLRACTGLALLELGTQVH 296
           + + N++I G  ++    ++L  +  M+R  F+  D  +   +++A   L  + +G Q+H
Sbjct: 70  VFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLH 129

Query: 297 VHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
              L +  D  L +   L+ MY +CG +  A  VF  M + + I+W+ M++   + G  +
Sbjct: 130 CQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMK 189

Query: 355 EALKLFESMKVSRIKPNYITIVG---------------------------VLFACSHAGF 387
              +LF+ M V  +    + + G                           ++   +H G+
Sbjct: 190 GGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGY 249

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW---- 443
            E+ ++ F+ +++  G+ P     + ++    +AG L E  K++H    E   + W    
Sbjct: 250 FEEAFSFFRELQR-KGMRPNETSLTGVLSACAQAGAL-EFGKILHGF-IEKSGLAWIVSV 306

Query: 444 -RALLGACKVHRNTDLAICAAKKILN 468
             ALL       N  +A    ++I+N
Sbjct: 307 NNALLDTYSKCGNVLMAQLVFERIMN 332


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/584 (36%), Positives = 340/584 (58%), Gaps = 14/584 (2%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLE-EAQ 129
           RA       L++ C   +A+ +   +H H+L  G      ++    ++       +  A 
Sbjct: 26  RAPEQNCLALLQAC---NALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATDYAAS 82

Query: 130 VLFDQMPERNVVS---WTTMISAYCD-AKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
            LF    +  +     + T+I AY       DKAL L   ML + + PN FTY  VL+AC
Sbjct: 83  FLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKAC 142

Query: 186 DSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAK-LGELRNAECVFNEMPTRDLVVW 241
             L +L   + +H  ++K GF+ D+ V++ ++ +Y+   G + +A  VF+EMP  D V W
Sbjct: 143 AGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTW 202

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           +++IGG+A+     EA+ L++ M+ A    D+ T+ S+L ACT L  LELG  +  ++ +
Sbjct: 203 SAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIER 262

Query: 302 YD-HDLI-LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
           ++ H  + ++NAL+DM+ KCG +  A+ +F  M +K ++SW+++I G+A +G  QEA  L
Sbjct: 263 HEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCL 322

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           FE M  S + P+ +  +G+L ACSH+G VE G  +F SM K Y + P  EHY CM+D+  
Sbjct: 323 FEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYC 382

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479
           R G ++EA++ +  MP EP+ V  R L+ AC+ H    L     K ++  +P     Y+L
Sbjct: 383 RTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVL 442

Query: 480 LSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKH 539
           LSNIYA +  W++  ++R+ M  +G+ K PG + IE++ +I+ F   D SH Q  +I + 
Sbjct: 443 LSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQHKEIYEM 502

Query: 540 LKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKN 599
           +  + +++   GY P T+ VL D+  E KEDS+  HSEKLAI FGL+    G  IRI KN
Sbjct: 503 VDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKLAIAFGLLRTPPGTPIRIVKN 562

Query: 600 LRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           LR+C DCH+ +K  +K+ ++ I++RD  R+HHF+ G CSCGD+W
Sbjct: 563 LRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/609 (34%), Positives = 349/609 (57%), Gaps = 40/609 (6%)

Query: 75  VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ 134
           ++YA + +     + ++    VH H+L  G +P   + + ++  +     ++ +  +F+ 
Sbjct: 71  LSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNG 130

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL--- 191
           + E + + + +MI AY      ++ +     M   G   + FT+  VL++   L+ +   
Sbjct: 131 IGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMG 190

Query: 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQN 251
           + +H  I+++G + D++V ++LI +Y K GE+ +A  VF+ M  RD+  WN+++ G+ ++
Sbjct: 191 KCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKS 250

Query: 252 SDVDEALNLYKRM---------------------------------KRAGFAADQSTLTS 278
             +D AL +++RM                                 + +G   +  T+ S
Sbjct: 251 GCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMS 310

Query: 279 VLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI--Q 334
           VL AC  L+ LE G Q+H     +  + +  +  AL  MY KCGSL DA + F ++   +
Sbjct: 311 VLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNE 370

Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
           K++I+W+TMI+  A  G+  +A+  F  M  + I+P+ IT  G+L  CSH+G V+ G  +
Sbjct: 371 KNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKY 430

Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR 454
           F  M   Y I+P  EHY+C+ DLLGRAG+L EA KL+ EMP       W +LL AC+ HR
Sbjct: 431 FNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHR 490

Query: 455 NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWI 514
           N ++A  AA+K+  L+P++ G Y+LLSN+YA + +W EV ++R  ++++G  K PGCSWI
Sbjct: 491 NLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWI 550

Query: 515 EVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQY 574
           E+N + H F   D+SHPQ  +I   L+ L +K+   GY PDT+YVL D+  E+KE ++  
Sbjct: 551 EINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIA 610

Query: 575 HSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQD 634
           HSEKLA+ FG+++      +R+ KNLRICGDCHT     +++  + +++RD  R+HHF+ 
Sbjct: 611 HSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKG 670

Query: 635 GNCSCGDYW 643
           G CSCGDYW
Sbjct: 671 GCCSCGDYW 679



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 128/257 (49%), Gaps = 38/257 (14%)

Query: 173 PNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P + +Y+ V +    L +L+   Q+H  ++  G +    V S ++  YA  G++ ++  V
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           FN +     +++NS+I  +A+    +  +  Y  M   GF  D  T   VL++   L  +
Sbjct: 128 FNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSV 187

Query: 290 ELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLED----------------------- 324
            +G  VH  +L+     DL +  +L+ +Y KCG + D                       
Sbjct: 188 WMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGY 247

Query: 325 --------AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM--KVSRIKPNYIT 374
                   A+++F RM  ++++SW+TMISG +Q+G +Q+AL LF+ M  + S ++PN++T
Sbjct: 248 TKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVT 307

Query: 375 IVGVLFACSHAGFVEDG 391
           I+ VL AC+    +E G
Sbjct: 308 IMSVLPACAQLSTLERG 324



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 136/552 (24%), Positives = 225/552 (40%), Gaps = 92/552 (16%)

Query: 25  ITPPVASCNTITRNSSSLLDDFTRFCYQRD--LPRAMKAMHAMQCHGVRADSVTYAELIK 82
           I   V+  N I   SS L +   R  Y R     R +    +M   G   D  T+  ++K
Sbjct: 121 IDSSVSVFNGIGEPSSLLFNSMIR-AYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLK 179

Query: 83  CCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER---- 138
             +   +V   K VH  +L  G + + ++   L+ ++ K   + +A  +FD M  R    
Sbjct: 180 SSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSS 239

Query: 139 ---------------------------NVVSWTTMISAYCDAKMNDKALELLIFMLRE-- 169
                                      N+VSWTTMIS Y  + +  +AL L   M++E  
Sbjct: 240 WNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDS 299

Query: 170 GVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
           GVRPN  T  +VL AC  L  L   RQ+H    ++G  S+  V  AL  +YAK G L +A
Sbjct: 300 GVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDA 359

Query: 227 ECVFNEM--PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
              F+++    ++L+ WN++I  +A      +A++ ++ M +AG   D  T T +L  C+
Sbjct: 360 RNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCS 419

Query: 285 GLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMI 344
              L+++G       LKY       N +   Y                I   V  ++ + 
Sbjct: 420 HSGLVDVG-------LKY------FNHMSTTYS---------------INPRVEHYACVA 451

Query: 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF-ACSHAGFVEDGWNHFKSMKKFYG 403
             L + G   EA KL   M +    P   +I G L  AC     +E       + +K + 
Sbjct: 452 DLLGRAGRLAEASKLVGEMPM----PAGPSIWGSLLAACRKHRNLEMAET---AARKLFV 504

Query: 404 IDP-GREHYSCMIDLLGRAGKLQEAVKL----IHEMPYEPDAVTWRALLGACKVHRNTDL 458
           ++P    +Y  + ++   AG+ QE  KL      +   +    +W  + G   +    D 
Sbjct: 505 LEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDT 564

Query: 459 AICAAKKI---LNLDPQD-------PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
           +    K+I   L   P+        P T  +L +I    ++++ +A   K   A GI   
Sbjct: 565 SHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNT 624

Query: 509 PGCSWIEVNKQI 520
           P  + + V K +
Sbjct: 625 PAETVLRVTKNL 636


>gi|357147965|ref|XP_003574566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 923

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/577 (37%), Positives = 336/577 (58%), Gaps = 6/577 (1%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D +T++  +  C +  A+ + ++VH   L         + N L+ M+ K + +E+A+ +F
Sbjct: 347 DRMTFSSALGACSSPGALMDGRMVHAMTLQLSLHHNLLVGNSLITMYGKCNSIEDAERIF 406

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192
             MP  +VVS   +I +Y   +   KA+++  +M R  V+ N  T   +L +  S   LR
Sbjct: 407 QLMPNHDVVSCNILIGSYAVLEDGTKAMQVFFWMRRGEVKLNYITIVNILGSFTSSNDLR 466

Query: 193 Q----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
                LH   I  GF SD +V ++LI +YAK G+L ++  VF  +  R +V WN++I   
Sbjct: 467 NYGLPLHAYTIHAGFLSDDYVSNSLITMYAKCGDLESSNNVFQRIINRSVVSWNAMIAAN 526

Query: 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDL 306
            Q+   +E+L L+  M+  G   D   L   + +   LA LE G Q+H   LK    +D 
Sbjct: 527 VQHGHGEESLKLFMDMRHDGNGLDHICLAECMSSSASLASLEEGMQLHGLGLKCGLGNDS 586

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
            + NA +DMY KCG +++ + +      +    W+T+ISG A+ GY +EA + F+ M   
Sbjct: 587 HVVNAAMDMYGKCGKMDEMLKMLPDPAIRPQQCWNTLISGYARYGYFKEAEETFKHMISV 646

Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
              P+Y+T V +L ACSHAG V+ G +++ SM   +G+ PG +H  C++D+LGR G+  E
Sbjct: 647 GRTPDYVTFVTLLSACSHAGLVDKGIDYYNSMSSVFGVSPGIKHCVCIVDILGRLGRFAE 706

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486
           A K I +MP  P+ + WR+LL + + H+N D+   AAK++L LDP D   Y+LLSN+YA 
Sbjct: 707 AEKFIEDMPVLPNDLIWRSLLSSSRTHKNLDIGRKAAKRLLELDPFDDSAYVLLSNLYAT 766

Query: 487 SQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546
           S +W +V  VR  M+   + K P CSW++  K++  F + D SH   DKI   L  ++ K
Sbjct: 767 SARWSDVDRVRSHMKTINLNKIPACSWLKQKKEVSTFGIGDHSHKHADKIYMKLDEILLK 826

Query: 547 LVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
           L  VGY  DT+  L D + EQKE ++  HSEKLA+ +GL+++ +G T+RI KNLR+C DC
Sbjct: 827 LREVGYVADTSSALHDTDEEQKEQNLWNHSEKLALAYGLITVPEGCTVRIFKNLRVCADC 886

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           H   KL + + ++ IV+RDP R+HHF+ G+CSC D+W
Sbjct: 887 HLVFKLVSMVFDREIVLRDPYRFHHFKGGSCSCSDFW 923



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 196/387 (50%), Gaps = 10/387 (2%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           +R D+ T   LI  C +   V     VH+  L  G      +VN L+NM+     L +A+
Sbjct: 243 LRHDATTLCSLISVCASSDYVSYGSGVHSLCLRTGLHSYIPVVNALVNMYSSAGKLADAE 302

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS-- 187
            LF  M  R+++SW TMIS+Y     N  AL+ L  +L     P+  T+S+ L AC S  
Sbjct: 303 FLFWNMSRRDLISWNTMISSYVQNGNNMDALKTLGQLLHTNEGPDRMTFSSALGACSSPG 362

Query: 188 -LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
            L+  R +H   +++    ++ V ++LI +Y K   + +AE +F  MP  D+V  N +IG
Sbjct: 363 ALMDGRMVHAMTLQLSLHHNLLVGNSLITMYGKCNSIEDAERIFQLMPNHDVVSCNILIG 422

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA-LLELGTQVHVHVLK--YD 303
            +A   D  +A+ ++  M+R     +  T+ ++L + T    L   G  +H + +   + 
Sbjct: 423 SYAVLEDGTKAMQVFFWMRRGEVKLNYITIVNILGSFTSSNDLRNYGLPLHAYTIHAGFL 482

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            D  ++N+L+ MY KCG LE + +VF R+I + V+SW+ MI+   Q+G+ +E+LKLF  M
Sbjct: 483 SDDYVSNSLITMYAKCGDLESSNNVFQRIINRSVVSWNAMIAANVQHGHGEESLKLFMDM 542

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
           +      ++I +   + + +    +E+G   H   +K   G D      +  +D+ G+ G
Sbjct: 543 RHDGNGLDHICLAECMSSSASLASLEEGMQLHGLGLKCGLGNDS--HVVNAAMDMYGKCG 600

Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGA 449
           K+ E +K++ +    P    W  L+  
Sbjct: 601 KMDEMLKMLPDPAIRPQQC-WNTLISG 626



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 115/405 (28%), Positives = 191/405 (47%), Gaps = 15/405 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKL----VHNHVLSGGFEPETFLVN 113
           A   +  M+  GV       A L+  C      EE +     +H      G     ++  
Sbjct: 27  AFSMLRGMRERGVPLSGFALASLVTAC---ERWEEGRACGAAIHALTQKAGLMVNVYIGT 83

Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
            LL+++     + +AQ LF +MPERNVVSWT ++ A       ++AL     M RE +  
Sbjct: 84  ALLHLYGSQKHVLDAQRLFWEMPERNVVSWTALMVALSSNGHLEEALGYYRRMRRERIAC 143

Query: 174 NMFTYSAVLRACDSL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
           N   ++ V+  C SL   +   Q+   +I  G +  V V ++LI +   LG + +AE +F
Sbjct: 144 NANAFATVVSLCGSLEDEVAGLQVFSHVIVSGLQRQVSVANSLISMLGNLGRVHDAEKLF 203

Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA-DQSTLTSVLRACTGLALL 289
             M  RD V WN+++  ++      ++  ++  M+R G    D +TL S++  C     +
Sbjct: 204 YRMEERDTVSWNALVSMYSHEGLCSKSFRVFSDMRRGGLLRHDATTLCSLISVCASSDYV 263

Query: 290 ELGTQVHVHVLKYD-HDLI-LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
             G+ VH   L+   H  I + NAL++MY   G L DA  +F  M ++D+ISW+TMIS  
Sbjct: 264 SYGSGVHSLCLRTGLHSYIPVVNALVNMYSSAGKLADAEFLFWNMSRRDLISWNTMISSY 323

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
            QNG + +ALK    +  +   P+ +T    L ACS  G + DG     +M     +   
Sbjct: 324 VQNGNNMDALKTLGQLLHTNEGPDRMTFSSALGACSSPGALMDG-RMVHAMTLQLSLHHN 382

Query: 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKV 452
               + +I + G+   +++A ++   MP   D V+   L+G+  V
Sbjct: 383 LLVGNSLITMYGKCNSIEDAERIFQLMP-NHDVVSCNILIGSYAV 426



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 156/324 (48%), Gaps = 11/324 (3%)

Query: 135 MPE--RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192
           MP+  R   SW T IS       +  A  +L  M   GV  + F  ++++ AC+     R
Sbjct: 1   MPDDHRTPSSWYTAISGCVRCGRDSTAFSMLRGMRERGVPLSGFALASLVTACERWEEGR 60

Query: 193 Q----LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGF 248
                +H    K G   +V++ +AL+ +Y     + +A+ +F EMP R++V W +++   
Sbjct: 61  ACGAAIHALTQKAGLMVNVYIGTALLHLYGSQKHVLDAQRLFWEMPERNVVSWTALMVAL 120

Query: 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDL 306
           + N  ++EAL  Y+RM+R   A + +   +V+  C  L     G QV  HV+       +
Sbjct: 121 SSNGHLEEALGYYRRMRRERIACNANAFATVVSLCGSLEDEVAGLQVFSHVIVSGLQRQV 180

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
            + N+L+ M    G + DA  +F RM ++D +SW+ ++S  +  G   ++ ++F  M+  
Sbjct: 181 SVANSLISMLGNLGRVHDAEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSDMRRG 240

Query: 367 R-IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
             ++ +  T+  ++  C+ + +V  G +   S+    G+       + ++++   AGKL 
Sbjct: 241 GLLRHDATTLCSLISVCASSDYVSYG-SGVHSLCLRTGLHSYIPVVNALVNMYSSAGKLA 299

Query: 426 EAVKLIHEMPYEPDAVTWRALLGA 449
           +A  L   M    D ++W  ++ +
Sbjct: 300 DAEFLFWNMS-RRDLISWNTMISS 322



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 23/221 (10%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           ++K    M+  G   D +  AE +    +  ++EE   +H   L  G   ++ +VN  ++
Sbjct: 535 SLKLFMDMRHDGNGLDHICLAECMSSSASLASLEEGMQLHGLGLKCGLGNDSHVVNAAMD 594

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   ++E   +      R    W T+IS Y       +A E    M+  G  P+  T
Sbjct: 595 MYGKCGKMDEMLKMLPDPAIRPQQCWNTLISGYARYGYFKEAEETFKHMISVGRTPDYVT 654

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFE-----SDVFVRS-------ALIDIYAKLGELRN 225
           +  +L AC         H G++  G +     S VF  S        ++DI  +LG    
Sbjct: 655 FVTLLSACS--------HAGLVDKGIDYYNSMSSVFGVSPGIKHCVCIVDILGRLGRFAE 706

Query: 226 AECVFNEMPT--RDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
           AE    +MP    DL +W S++     + ++D      KR+
Sbjct: 707 AEKFIEDMPVLPNDL-IWRSLLSSSRTHKNLDIGRKAAKRL 746


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/629 (35%), Positives = 354/629 (56%), Gaps = 14/629 (2%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAEL 80
           F +     V S NT+    S+  D    F    D+ R M A        V+AD VT    
Sbjct: 100 FKMNNNKNVVSWNTMVGGFSAEGDTHGTF----DVLRQMLA----GGEDVKADEVTILNA 151

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
           +  C     +   K +H + L   F     + N  +  + K   L  AQ +F  +  + V
Sbjct: 152 VPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTV 211

Query: 141 VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCG 197
            SW  +I  +  +     +L+  + M   G+ P+ FT  ++L AC  L  LR   ++H  
Sbjct: 212 NSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGF 271

Query: 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEA 257
           II+   E D+FV  +++ +Y   GEL   + +F+ M  + LV WN++I G+ QN   D A
Sbjct: 272 IIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRA 331

Query: 258 LNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDM 315
           L ++++M   G      ++  V  AC+ L  L LG + H + LK+  + D  +  +L+DM
Sbjct: 332 LGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDM 391

Query: 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITI 375
           Y K GS+  +  VF+ + +K   SW+ MI G   +G ++EA+KLFE M+ +   P+ +T 
Sbjct: 392 YAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTF 451

Query: 376 VGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI-HEM 434
           +GVL AC+H+G + +G  +   MK  +G+ P  +HY+C+ID+LGRAG+L +A++++  EM
Sbjct: 452 LGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEM 511

Query: 435 PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494
             E D   W++LL +C++H+N ++    A K+  L+P+ P  Y+LLSN+YA   KW++V 
Sbjct: 512 SEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVR 571

Query: 495 EVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAP 554
           +VR+ M    + K+ GCSWIE+N+++ +F V +      ++I      L  K+  +GY P
Sbjct: 572 KVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRP 631

Query: 555 DTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTA 614
           DT  V  DL  E+K + ++ HSEKLA+ +GL+  ++G TIR+ KNLRIC DCH  AKL +
Sbjct: 632 DTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLIS 691

Query: 615 KMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           K+  + IV+RD  R+HHF++G CSCGDYW
Sbjct: 692 KVMEREIVVRDNKRFHHFKNGVCSCGDYW 720



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 122/418 (29%), Positives = 201/418 (48%), Gaps = 40/418 (9%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D  T   ++  C     +   K VH   +    + E  L N L++M+ K   +  AQ++F
Sbjct: 41  DVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIF 100

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG--VRPNMFTYSAVLRAC---DS 187
                +NVVSW TM+  +          ++L  ML  G  V+ +  T    +  C     
Sbjct: 101 KMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESF 160

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L  L++LHC  +K  F  +  V +A +  YAK G L  A+ VF+ + ++ +  WN++IGG
Sbjct: 161 LPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG 220

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHD 305
            AQ++D   +L+ + +MK +G   D  T+ S+L AC+ L  L LG +VH  +++   + D
Sbjct: 221 HAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERD 280

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           L +  ++L +Y  CG L    ++F  M  K ++SW+T+I+G  QNG+   AL +F  M +
Sbjct: 281 LFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVL 340

Query: 366 SRIKPNYITIVGVLFACS-----------HA----GFVED--------------GWNHFK 396
             I+   I+++ V  ACS           HA      +ED                +  +
Sbjct: 341 YGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQ 400

Query: 397 SMKKFYGI-DPGREHYSCMIDLLGRAGKLQEAVKLIHEMP---YEPDAVTWRALLGAC 450
           S K F G+ +     ++ MI   G  G  +EA+KL  EM    + PD +T+  +L AC
Sbjct: 401 SSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTAC 458



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 136/257 (52%), Gaps = 11/257 (4%)

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLRE----GVRPNMFTYSAVLRAC---DSLII 190
           RN VSW +MI  + D   ++++  LL  M+ E       P++ T   VL  C     + +
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
            + +H   +K+  + ++ + +AL+D+Y+K G + NA+ +F     +++V WN+++GGF+ 
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 251 NSDVDEALNLYKRMKRAG--FAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDL 306
             D     ++ ++M   G    AD+ T+ + +  C   + L    ++H + LK  + ++ 
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNE 180

Query: 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366
           ++ NA +  Y KCGSL  A  VF  +  K V SW+ +I G AQ+   + +L     MK+S
Sbjct: 181 LVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKIS 240

Query: 367 RIKPNYITIVGVLFACS 383
            + P+  T+  +L ACS
Sbjct: 241 GLLPDSFTVCSLLSACS 257



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 22/228 (9%)

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKR----AGFAADQSTLTSVLRACTGLALLEL 291
           R+ V WNS+I  F+ N   +E+  L   M        F  D +TL +VL  C     + L
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 292 GTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
           G  VH     L+ D +L+LNNAL+DMY KCG + +A  +F     K+V+SW+TM+ G + 
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 350 NGYSQEALKLFESMKVS--RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG 407
            G +     +   M      +K + +TI+  +  C H  F+        S+K+ +     
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL-------PSLKELHCYSLK 173

Query: 408 REHY------SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           +E        +  +    + G L  A ++ H +  +    +W AL+G 
Sbjct: 174 QEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKT-VNSWNALIGG 220


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/588 (37%), Positives = 332/588 (56%), Gaps = 32/588 (5%)

Query: 58   AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
            A+     M  HG+  D  TY  ++K       +     +H  V+  G +   F+ N L++
Sbjct: 1110 ALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLIS 1169

Query: 118  MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
            M+ K   L EA  + DZMP R+VVSW ++++        D ALE+   M   G++P+  T
Sbjct: 1170 MYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGT 1229

Query: 178  YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
             +++L A             +     ++  FV+                  +F ++  + 
Sbjct: 1230 MASLLPA-------------VTNTCLDNVSFVKE-----------------MFMKLANKS 1259

Query: 238  LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
            LV WN +I  +  NS   EA++++ +M+      D  ++ SVL AC  L+ L LG ++H 
Sbjct: 1260 LVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHE 1319

Query: 298  HVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
            +V+  +   +L+L NAL+DMY KCG LE A  VF +M  +DV+SW++MIS    NG  ++
Sbjct: 1320 YVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRD 1379

Query: 356  ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
            A+ LF  M+   + P+ I  V VL ACSHAG +++G  +FK M +   I P  EH+ CM+
Sbjct: 1380 AVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMV 1439

Query: 416  DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
            DLLGRAG++ EA   I +MP EP+   W ALL AC+V+ N  + + AA ++  L P+  G
Sbjct: 1440 DLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSG 1499

Query: 476  TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
             Y+LLSNIYA + +W++V  VR  M+ +GI K PG S  E++ ++H F   D SHPQ  +
Sbjct: 1500 YYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQ 1559

Query: 536  INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
            I + L  L+ K+   GY P+T+  L D+E E KE  +  HSEKLAI F +++   G  IR
Sbjct: 1560 IYEELDVLVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIR 1619

Query: 596  IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            I KNLR+CGDCH  AKL +K+  + I IRD  R+HHF +G CSCGDYW
Sbjct: 1620 ITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 1667



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 160/323 (49%), Gaps = 38/323 (11%)

Query: 131  LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DS 187
            +FD++P++NVV +  MI +Y +  +   AL +   M   G+ P+ +TY  VL+A    + 
Sbjct: 1082 IFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSED 1141

Query: 188  LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
            L +  Q+H  +++VG + +VFV + LI +Y K G L  A  V +ZMP RD+V WNS++ G
Sbjct: 1142 LWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAG 1201

Query: 248  FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI 307
             A+N   D+AL + K M+  G   D  T+ S+L A T                       
Sbjct: 1202 CARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVT----------------------- 1238

Query: 308  LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
              N  LD      ++     +F ++  K ++SW+ MI+    N    EA+ +F  M+   
Sbjct: 1239 --NTCLD------NVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHA 1290

Query: 368  IKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
            + P+ I+I  VL AC     +  G   H   ++K   + P     + +ID+  + G L+ 
Sbjct: 1291 VDPDAISIASVLPACGDLSALLLGRRIHEYVVRK--RLQPNLLLENALIDMYAKCGCLEY 1348

Query: 427  AVKLIHEMPYEPDAVTWRALLGA 449
            A ++  +M +  D V+W +++ A
Sbjct: 1349 AREVFDQMKFR-DVVSWTSMISA 1370



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 181/375 (48%), Gaps = 31/375 (8%)

Query: 55   LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
            L  A + +  M C     D V++  L+  C      ++A  V   +   G +P+   +  
Sbjct: 1177 LVEACRVLDZMPCR----DVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMAS 1232

Query: 115  LLNMHVKFSL--LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
            LL       L  +   + +F ++  +++VSW  MI+ Y +  M  +A+++ + M    V 
Sbjct: 1233 LLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVD 1292

Query: 173  PNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
            P+  + ++VL AC    +L++ R++H  +++   + ++ + +ALID+YAK G L  A  V
Sbjct: 1293 PDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREV 1352

Query: 230  FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
            F++M  RD+V W S+I  +  N    +A++L+ RM+  G   D     SVL AC+   LL
Sbjct: 1353 FDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLL 1412

Query: 290  ELG-------TQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWS 341
            + G       T+    V + +H +     ++D+  + G +++A     +M ++ +   W 
Sbjct: 1413 DEGRYYFKLMTEECKIVPRIEHFV----CMVDLLGRAGQVDEAYGFIKQMPMEPNERVWG 1468

Query: 342  TMISGLAQNGYSQEALKLFESMKVSRIKP---NYITIVGVLFACSHAGFVEDGWNHFKSM 398
             ++S  A   YS   + L  + ++ ++ P    Y  ++  ++A   AG  ED     +S+
Sbjct: 1469 ALLS--ACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYA--KAGRWED-VTTVRSI 1523

Query: 399  KKFYGID--PGREHY 411
             K  GI   PG  ++
Sbjct: 1524 MKTKGIKKMPGVSNF 1538


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/588 (37%), Positives = 331/588 (56%), Gaps = 32/588 (5%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     M  HG+  D  TY  ++K       +     +H  V+  G +   F+ N L++
Sbjct: 121 ALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLIS 180

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   L EA  + DQMP R+VVSW ++++        D ALE+   M   G++P+  T
Sbjct: 181 MYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGT 240

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
            +++L A             +     ++  FV+                  +F ++  + 
Sbjct: 241 MASLLPA-------------VTNTCLDNVSFVKE-----------------MFMKLANKS 270

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           LV WN +I  +  NS   EA++++ +M+      D  ++ SVL AC  L+ L LG ++H 
Sbjct: 271 LVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHE 330

Query: 298 HVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           +V+  +   +L+L NAL+DMY KCG LE A  VF +M  +DV+SW++MIS    NG  ++
Sbjct: 331 YVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRD 390

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
           A+ LF  M+   + P+ I  V VL ACSHAG +++G  +FK M +   I P  EH+ CM+
Sbjct: 391 AVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMV 450

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
           DLLGRAG++ EA   I +MP EP+   W ALL AC+V+ N  + + AA ++  L P+  G
Sbjct: 451 DLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSG 510

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
            Y+LLSNIYA + +W++V  VR  M+ +GI K PG S  E++ ++H F   D SHPQ  +
Sbjct: 511 YYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQ 570

Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
           I + L   + K+   GY P+T+  L D+E E KE  +  HSEKLAI F +++   G  IR
Sbjct: 571 IYEELDVSVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIR 630

Query: 596 IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           I KNLR+CGDCH  AKL +K+  + I IRD  R+HHF +G CSCGDYW
Sbjct: 631 ITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 160/323 (49%), Gaps = 38/323 (11%)

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DS 187
           +FD++P++NVV +  MI +Y +  +   AL +   M   G+ P+ +TY  VL+A    + 
Sbjct: 93  IFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSED 152

Query: 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           L +  Q+H  +++VG + +VFV + LI +Y K G L  A  V ++MP RD+V WNS++ G
Sbjct: 153 LWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAG 212

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLI 307
            A+N   D+AL + K M+  G   D  T+ S+L A T                       
Sbjct: 213 CARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVT----------------------- 249

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
             N  LD      ++     +F ++  K ++SW+ MI+    N    EA+ +F  M+   
Sbjct: 250 --NTCLD------NVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHA 301

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
           + P+ I+I  VL AC     +  G   H   ++K   + P     + +ID+  + G L+ 
Sbjct: 302 VDPDAISIASVLPACGDLSALLLGRRIHEYVVRK--RLQPNLLLENALIDMYAKCGCLEY 359

Query: 427 AVKLIHEMPYEPDAVTWRALLGA 449
           A ++  +M +  D V+W +++ A
Sbjct: 360 AREVFDQMKFR-DVVSWTSMISA 381



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 181/375 (48%), Gaps = 31/375 (8%)

Query: 55  LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114
           L  A + +  M C     D V++  L+  C      ++A  V   +   G +P+   +  
Sbjct: 188 LVEACRVLDQMPCR----DVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMAS 243

Query: 115 LLNMHVKFSL--LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           LL       L  +   + +F ++  +++VSW  MI+ Y +  M  +A+++ + M    V 
Sbjct: 244 LLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVD 303

Query: 173 PNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
           P+  + ++VL AC    +L++ R++H  +++   + ++ + +ALID+YAK G L  A  V
Sbjct: 304 PDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREV 363

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F++M  RD+V W S+I  +  N    +A++L+ RM+  G   D     SVL AC+   LL
Sbjct: 364 FDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLL 423

Query: 290 ELG-------TQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWS 341
           + G       T+    V + +H +     ++D+  + G +++A     +M ++ +   W 
Sbjct: 424 DEGRYYFKLMTEECKIVPRIEHFV----CMVDLLGRAGQVDEAYGFIKQMPMEPNERVWG 479

Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKP---NYITIVGVLFACSHAGFVEDGWNHFKSM 398
            ++S  A   YS   + L  + ++ ++ P    Y  ++  ++A   AG  ED     +S+
Sbjct: 480 ALLS--ACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYA--KAGRWED-VTTVRSI 534

Query: 399 KKFYGID--PGREHY 411
            K  GI   PG  ++
Sbjct: 535 MKTKGIKKMPGVSNF 549


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/571 (39%), Positives = 335/571 (58%), Gaps = 51/571 (8%)

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
           ++  + K   LE A+  FD MPER+VVSW  M+S Y    + ++ L L   M+  G+ P+
Sbjct: 200 MVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPD 259

Query: 175 MFTYSAVLRACDS-------LIILRQLHCGIIKVGFESDVFVRSALIDIYAK-------- 219
             T+  V+ AC S         ++R LH   I++    + FVR+AL+D+YAK        
Sbjct: 260 ETTWVTVISACSSRGDPCLAASLVRTLHQKQIQL----NCFVRTALLDMYAKCGSIGAAR 315

Query: 220 ------------------------LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
                                   +G L +A  +FN MP R++V WNS+I G+AQN    
Sbjct: 316 RIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSA 375

Query: 256 EALNLYKRMKRAG-FAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NAL 312
            A+ L+K M  A     D+ T+ SV+ AC  L  LELG  V   + +    L ++  NA+
Sbjct: 376 MAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAM 435

Query: 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
           + MY +CGS+EDA  VF  M  +DV+S++T+ISG A +G+  EA+ L  +MK   I+P+ 
Sbjct: 436 IFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDR 495

Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
           +T +GVL ACSHAG +E+G   F+S+K     DP  +HY+CM+DLLGR G+L++A + + 
Sbjct: 496 VTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTME 550

Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
            MP EP A  + +LL A ++H+  +L   AA K+  L+P + G +ILLSNIYA++ +W +
Sbjct: 551 RMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKD 610

Query: 493 VAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGY 552
           V  +R+ M+  G+ K  G SW+E   ++H F VAD SH + D I + L  L +K+   GY
Sbjct: 611 VERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGY 670

Query: 553 APDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL 612
             D + VL+D+E E+KE+ +  HSEKLAI + L+    G  IR+ KNLR+C DCHT  K+
Sbjct: 671 IADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKM 730

Query: 613 TAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            +K+E + I++RD  R+H F DG CSC DYW
Sbjct: 731 ISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 113/460 (24%), Positives = 195/460 (42%), Gaps = 104/460 (22%)

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE-AQVLFDQMPERNVVSWTTMISAYCD 152
           + +H  ++        + V +L+N   +         +LF+     NV  +T+M+  Y  
Sbjct: 18  RQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFYSH 77

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSA 212
            + + K + +   M   GVRP+ F Y  ++++  +  I    H  ++K+G  SD FVR+A
Sbjct: 78  LQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGGI--GFHAHVLKLGHGSDAFVRNA 135

Query: 213 LIDIYAKLGELRNAECVFNE---------------------------------MPTRDLV 239
           +ID+YA+LG + +A  VF+E                                 MP R+++
Sbjct: 136 VIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVI 195

Query: 240 VW-------------------------------NSIIGGFAQNSDVDEALNLYKRMKRAG 268
            W                               N+++ G+AQN   +E L L+  M  AG
Sbjct: 196 TWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAG 255

Query: 269 FAADQSTLTSVLRACT--GLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGS----- 321
              D++T  +V+ AC+  G   L       +H  +   +  +  ALLDMY KCGS     
Sbjct: 256 IEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAAR 315

Query: 322 ---------------------------LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
                                      L+ A  +F+ M  ++V++W++MI+G AQNG S 
Sbjct: 316 RIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSA 375

Query: 355 EALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
            A++LF+ M    ++ P+ +T+V V+ AC H G +E G N          I      ++ 
Sbjct: 376 MAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG-NWVVRFLTENQIKLSISGHNA 434

Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           MI +  R G +++A ++  EM    D V++  L+     H
Sbjct: 435 MIFMYSRCGSMEDAKRVFQEMATR-DVVSYNTLISGFAAH 473



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 15/169 (8%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D VT   +I  C    A+E    V   +     +      N ++ M+ +   +E+A+ +F
Sbjct: 393 DEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVF 452

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192
            +M  R+VVS+ T+IS +       +A+ L+  M   G+ P+  T+  VL AC       
Sbjct: 453 QEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACS------ 506

Query: 193 QLHCGIIKVG---FES----DVFVRSALIDIYAKLGELRNAECVFNEMP 234
             H G+++ G   FES     +   + ++D+  ++GEL +A+     MP
Sbjct: 507 --HAGLLEEGRKVFESIKDPAIDHYACMVDLLGRVGELEDAKRTMERMP 553


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/537 (39%), Positives = 326/537 (60%), Gaps = 10/537 (1%)

Query: 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV--- 171
           LL+M+ K   L  A  +F+ M  RN V+W+ ++  +       +A  L   ML +G+   
Sbjct: 274 LLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFL 333

Query: 172 RPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
            P   + ++ LRAC +L  L   +QLH  + K G  +D+   ++L+ +YAK G +  A  
Sbjct: 334 SPT--SVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATT 391

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           +F++M  +D V +++++ G+ QN   DEA  ++++M+      D +T+ S++ AC+ LA 
Sbjct: 392 LFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAA 451

Query: 289 LELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           L+ G   H  V V     +  + NAL+DMY KCG ++ +  +F  M  +D++SW+TMI+G
Sbjct: 452 LQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAG 511

Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
              +G  +EA  LF  MK    +P+ +T + ++ ACSH+G V +G   F  M   YGI P
Sbjct: 512 YGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITP 571

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
             EHY  M+DLL R G L EA + I  MP + D   W ALLGAC+VH+N DL    +  I
Sbjct: 572 RMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMI 631

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
             L P+  G ++LLSNI++ + ++DE AEVR   + +G  K PGCSWIE+N  +HAF   
Sbjct: 632 QQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGG 691

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D SH Q  +I + L +++  +  +GY  DT++VLQD+E E+KE ++ YHSEKLAI FG++
Sbjct: 692 DRSHAQSSEIYQELDNILVDINKLGYRADTSFVLQDVEEEEKEKALLYHSEKLAIAFGVL 751

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +L++ KTI + KNLR+CGDCHT  K    +  + I++RD  R+HHF++G CSCGD+W
Sbjct: 752 TLSEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/394 (29%), Positives = 203/394 (51%), Gaps = 15/394 (3%)

Query: 71  RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130
           + ++ T+  ++K C A   +  A+ VH H    G   + F+   L++++ K +    A  
Sbjct: 126 QPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAAT 185

Query: 131 LFDQMPERNVVSWTTMISAYC-DAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---D 186
           +F +MP R+VV+W  M++ Y    K +D    LL  ++++   PN  T  A+L       
Sbjct: 186 VFRRMPARDVVAWNAMLAGYALHGKYSDTIACLL--LMQDDHAPNASTLVALLPLLAQHG 243

Query: 187 SLIILRQLHCGIIKVGFESD----VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
           +L   R +H   ++     D    V V +AL+D+YAK G L  A  VF  M  R+ V W+
Sbjct: 244 ALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWS 303

Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           +++GGF     + EA +L+K M   G      +++ S LRAC  L+ L LG Q+H  + K
Sbjct: 304 ALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAK 363

Query: 302 --YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
                DL   N+LL MY K G ++ A ++F +M+ KD +S+S ++SG  QNG + EA ++
Sbjct: 364 SGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRV 423

Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
           F  M+   ++P+  T+V ++ ACSH   ++ G     S+    GI       + +ID+  
Sbjct: 424 FRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSV-IVRGIASETSICNALIDMYA 482

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           + G++  + ++   MP   D V+W  ++    +H
Sbjct: 483 KCGRIDLSRQIFDVMPAR-DIVSWNTMIAGYGIH 515



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 178/376 (47%), Gaps = 18/376 (4%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           L  A+ LFDQ+P   +  +  +I AY                 R   +PN +T+  VL+A
Sbjct: 79  LSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVLKA 138

Query: 185 CDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
           C +L+ LR    +HC   + G  +D+FV +AL+D+YAK    R+A  VF  MP RD+V W
Sbjct: 139 CSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAW 198

Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
           N+++ G+A +    + +     M+    A + STL ++L        L  G  VH + ++
Sbjct: 199 NAMLAGYALHGKYSDTIACLLLMQD-DHAPNASTLVALLPLLAQHGALSQGRAVHAYSVR 257

Query: 302 ----YDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
               +DH   +++  ALLDMY KCG L  A  VF  M  ++ ++WS ++ G    G   E
Sbjct: 258 ACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLE 317

Query: 356 ALKLFESM---KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
           A  LF+ M    +  + P   ++   L AC++   +  G     ++    G+       +
Sbjct: 318 AFSLFKDMLAQGLCFLSPT--SVASALRACANLSDLCLG-KQLHALLAKSGLHTDLTAGN 374

Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
            ++ +  +AG + +A  L  +M  + D V++ AL+     +   D A    +K+   + Q
Sbjct: 375 SLLSMYAKAGLIDQATTLFDQMVVK-DTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQ 433

Query: 473 DPGTYILLSNIYANSQ 488
            P    ++S I A S 
Sbjct: 434 -PDVATMVSLIPACSH 448



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 136/278 (48%), Gaps = 7/278 (2%)

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           + A  ++ C     +   K +H  +   G   +    N LL+M+ K  L+++A  LFDQM
Sbjct: 337 SVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQM 396

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLH 195
             ++ VS++ ++S Y      D+A  +   M    V+P++ T  +++ AC  L  L+   
Sbjct: 397 VVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGK 456

Query: 196 CG---IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
           CG   +I  G  S+  + +ALID+YAK G +  +  +F+ MP RD+V WN++I G+  + 
Sbjct: 457 CGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHG 516

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ-VHVHVLKYDHDLILNN- 310
              EA  L+  MK      D  T   ++ AC+   L+  G +  H+   KY     + + 
Sbjct: 517 LGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHY 576

Query: 311 -ALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
             ++D+  + G L++A      M ++ DV  W  ++  
Sbjct: 577 IGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGA 614



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 5/216 (2%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A +    MQ   V+ D  T   LI  C    A++  K  H  V+  G   ET + N L++
Sbjct: 420 AFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALID 479

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K   ++ ++ +FD MP R++VSW TMI+ Y    +  +A  L + M  +   P+  T
Sbjct: 480 MYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVT 539

Query: 178 YSAVLRACDSLIIL----RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
           +  ++ AC    ++    R  H    K G    +     ++D+ A+ G L  A      M
Sbjct: 540 FICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGM 599

Query: 234 PTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268
           P + D+ VW +++G    + ++D    +   +++ G
Sbjct: 600 PLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLG 635


>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/564 (37%), Positives = 342/564 (60%), Gaps = 9/564 (1%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           +V   +++H HV+      + F+ + L++ ++K    ++A +LFD+MP+++ VSW +++S
Sbjct: 60  SVSICRIIHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVS 119

Query: 149 AYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFE 204
                    + L +   M  +  ++ N FT+ +V+ AC S     +   +HC  +K+G  
Sbjct: 120 GLAKIGQLGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLV 179

Query: 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPT--RDLVVWNSIIGGFAQNSDVDEALNLYK 262
            +V V +AL+++Y K G + +A  +F+EMP   + +V WNSI+   AQN   +EA N + 
Sbjct: 180 YEVKVVNALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFD 239

Query: 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCG 320
            M+  GF  D +T+ S+L+AC    L  +   +H  +     D +L +   LL++Y K G
Sbjct: 240 MMRVNGFFPDDATMVSLLQACENFPLGRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLG 299

Query: 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM-KVSRIKPNYITIVGVL 379
            L ++  VF  + + D ++W+ M++G A +G  +EA++ FE + +   ++P+++T   +L
Sbjct: 300 RLNNSRKVFEEISKPDKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLL 359

Query: 380 FACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD 439
            ACSH+G V++G   F+ M   Y + P  +HYSCM+DLLGR G L +A +LI  MP+EP+
Sbjct: 360 SACSHSGLVKEGKYFFRVMSDVYKVQPRLDHYSCMVDLLGRCGLLDDAHELIKNMPFEPN 419

Query: 440 AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKT 499
           +  W ALLGAC+VHRN DL   AAK ++ LDP DP  YI+LSN+Y+ +  W++ ++VR  
Sbjct: 420 SGVWGALLGACRVHRNIDLGKEAAKNLIALDPSDPRNYIMLSNMYSAAGLWNDASKVRTL 479

Query: 500 MRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYV 559
           M+ + +T+  GCS+IE   +IH F V D +HP   +I+K L+ +++K+  VG+  +T  +
Sbjct: 480 MKNKVLTRNQGCSFIEHGNKIHRFVVDDYTHPDSHRIHKKLEEVMKKIQDVGFVHETESI 539

Query: 560 LQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQ 619
           L D++ E K D I  HSEK+A+ +GL+       + I KNLRIC DCH   K  + +E +
Sbjct: 540 LHDVDEEVKIDMITKHSEKIALAYGLLVTNADMPLVIIKNLRICRDCHNTVKFVSMVEKR 599

Query: 620 TIVIRDPIRYHHFQDGNCSCGDYW 643
           TI+IRD  R+H F  G CSCGDYW
Sbjct: 600 TIIIRDTKRFHQFSGGLCSCGDYW 623



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 160/310 (51%), Gaps = 13/310 (4%)

Query: 173 PNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           P + T    L++  S+ I R +H  +IK     D F+   L+  Y K+G  ++A  +F+E
Sbjct: 46  PFLSTLILHLKSSSSVSICRIIHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDE 105

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR-AGFAADQSTLTSVLRACTGLALLEL 291
           MP +D V WNS++ G A+   + E L+++ +MK  +    ++ T  SV+ AC      + 
Sbjct: 106 MPKKDFVSWNSLVSGLAKIGQLGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDE 165

Query: 292 GTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRM--IQKDVISWSTMISGL 347
           G  VH   +K    +++ + NAL++MY K G +E A  +FS M   +K ++SW+++++  
Sbjct: 166 GYYVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVC 225

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH---AGFVEDGWNHFKSMKKFYGI 404
           AQNG   EA   F+ M+V+   P+  T+V +L AC +      VE        +    G+
Sbjct: 226 AQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACENFPLGRMVEV----LHGVIFTCGL 281

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAK 464
           D      + +++L  + G+L  + K+  E+  +PD V W A+L    +H     AI   +
Sbjct: 282 DENLTIVTTLLNLYSKLGRLNNSRKVFEEIS-KPDKVAWTAMLAGYAMHGCGKEAIEFFE 340

Query: 465 KILNLDPQDP 474
           +I+  +  +P
Sbjct: 341 RIVREEGMEP 350



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 141/272 (51%), Gaps = 9/272 (3%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           ++ +  T+  +I  C++  A +E   VH   +  G   E  +VN L+NM+ KF  +E A 
Sbjct: 143 LKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESAF 202

Query: 130 VLFDQMP--ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187
            LF +MP  E+++VSW ++++      M ++A      M   G  P+  T  ++L+AC++
Sbjct: 203 RLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACEN 262

Query: 188 LIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
             + R    LH  I   G + ++ + + L+++Y+KLG L N+  VF E+   D V W ++
Sbjct: 263 FPLGRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEISKPDKVAWTAM 322

Query: 245 IGGFAQNSDVDEALNLYKRMKR-AGFAADQSTLTSVLRACTGLALLELGT---QVHVHVL 300
           + G+A +    EA+  ++R+ R  G   D  T T +L AC+   L++ G    +V   V 
Sbjct: 323 LAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHSGLVKEGKYFFRVMSDVY 382

Query: 301 KYDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           K    L   + ++D+  +CG L+DA  +   M
Sbjct: 383 KVQPRLDHYSCMVDLLGRCGLLDDAHELIKNM 414


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/579 (38%), Positives = 336/579 (58%), Gaps = 36/579 (6%)

Query: 70  VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
           ++ D  T+   +K      A++  K + NH +  GF+   F+    ++M     +++ A 
Sbjct: 103 IKPDRFTFPFSLKGFTRDMALQHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAH 162

Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI 189
            +FD      VV+W  M+S Y   K    +  LL                 VL AC  L 
Sbjct: 163 KVFDMGDACEVVTWNIMLSGYNRVKQFKISKMLL-----------------VLSACSKL- 204

Query: 190 ILRQLHCG--IIKVGFESDVFVRSALID-IYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
             + L  G  I K       ++   +++ ++A  GE+  A+ VF+ M TRD+V W ++I 
Sbjct: 205 --KDLEWGKHIFK-------YINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMID 255

Query: 247 GFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH-- 304
           G+ + +    AL L++ M+ +    D+ T+ S+L AC  L  LELG  V   + K  +  
Sbjct: 256 GYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKN 315

Query: 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
           D  + NAL+DMY KCG++  A  VF  M QKD  +W+TMI GLA NG+ +EAL +F +M 
Sbjct: 316 DSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMI 375

Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
            + + P+ IT +GVL AC     V+ G + F +M   +GI P   HY CM+DLLG  G L
Sbjct: 376 EASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCL 431

Query: 425 QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484
           +EA+++I  MP +P+++ W + LGAC+VH+N  LA  AAK+IL L+P++   Y+LL NIY
Sbjct: 432 EEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELEPENGAVYVLLCNIY 491

Query: 485 ANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLI 544
           A S+KW+ + +VRK M  RGI K PGCS +E+N  ++ F   D SHPQ  +I   L++++
Sbjct: 492 AASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMM 551

Query: 545 QKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICG 604
           Q L+  GY+PDT+ V  DL  E KE ++  HSEKLAI + L+S   G TIRI KNLR+C 
Sbjct: 552 QGLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGVTIRIVKNLRMCV 611

Query: 605 DCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           DCH  AKL ++  N+ ++++D  R+HHF+ G+CSC ++W
Sbjct: 612 DCHHMAKLVSQAYNRELIVKDKTRFHHFRHGSCSCNNFW 650



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 135/288 (46%), Gaps = 24/288 (8%)

Query: 180 AVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA--KLGELRNAECVFNEMPTRD 237
           ++L  C S+  L+Q+H   IK+G  SD   R+ +I      + G +  A  VF+ +P   
Sbjct: 12  SLLEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPS 71

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
           + +WN++I G+++ S  +  +++Y  M  +    D+ T    L+  T    L+ G ++  
Sbjct: 72  MFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLN 131

Query: 298 HVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG---LAQNGY 352
           H +K  +D +L +  A + M+  CG ++ A  VF      +V++W+ M+SG   + Q   
Sbjct: 132 HAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKI 191

Query: 353 SQEALKLFESMKVSRIKPN-----YIT--IVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405
           S+  L L    K+  ++       YI   IV  +FA    G +++    F +MK    + 
Sbjct: 192 SKMLLVLSACSKLKDLEWGKHIFKYINGGIVEHMFAA--CGEMDEAQGVFDNMKTRDVVS 249

Query: 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEMPY---EPDAVTWRALLGAC 450
                ++ MID   R      A+ L  EM     +PD  T  ++L AC
Sbjct: 250 -----WTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIAC 292



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 103/235 (43%), Gaps = 14/235 (5%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           ++++D + R         A+     MQ   V+ D  T   ++  C    A+E  + V   
Sbjct: 251 TAMIDGYLRM---NHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKTC 307

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           +     + ++F+ N L++M+ K   + +A+ +F +M +++  +WTTMI         ++A
Sbjct: 308 IDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEA 367

Query: 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK 219
           L +   M+   V P+  TY  VL AC             ++ G +  V     ++D+   
Sbjct: 368 LAMFSNMIEASVTPDEITYIGVLCACMVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGC 427

Query: 220 LGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           +G L  A  V   MP + + +VW S +G          A  ++K ++ A  AA Q
Sbjct: 428 VGCLEEALEVIVNMPVKPNSIVWGSPLG----------ACRVHKNVQLADMAAKQ 472


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/615 (37%), Positives = 352/615 (57%), Gaps = 36/615 (5%)

Query: 49  FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108
           + + +D  + +     MQ  GVR D+  Y  LIK      A       H HVL  G   +
Sbjct: 5   YSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKS-----AGTGGIGFHAHVLKLGHGSD 59

Query: 109 TFLVNILLNMHV--------------KFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK 154
            F+ N +++M+               K+    +AQ LFD MPERNV++WT M++ Y   K
Sbjct: 60  AFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVK 119

Query: 155 MNDKALELLIFMLREGV---RPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRS 211
             + A      M    V      +  Y+    A ++L +  ++      +G   +    +
Sbjct: 120 DLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEM------LGAYRNSVTWN 173

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG-FA 270
           A+I  Y ++G+L +A  +FN MP R++V WNS+I G+AQN     A+ L+K M  A    
Sbjct: 174 AMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLT 233

Query: 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCGSLEDAMSV 328
            D+ T+ SV+ AC  L  LELG  V   + +    L ++  NA++ MY +CGS+EDA  V
Sbjct: 234 PDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRV 293

Query: 329 FSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388
           F  M  +DV+S++T+ISG A +G+  EA+ L  +MK   I+P+ +T +GVL ACSHAG +
Sbjct: 294 FQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLL 353

Query: 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
           E+G   F+S+K     DP  +HY+CM+DLLGR G+L++A + +  MP EP A  + +LL 
Sbjct: 354 EEGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLN 408

Query: 449 ACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508
           A ++H+  +L   AA K+  L+P + G +ILLSNIYA++ +W +V  +R+ M+  G+ K 
Sbjct: 409 ASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKT 468

Query: 509 PGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQK 568
            G SW+E   ++H F VAD SH + D I + L  L +K+   GY  D + VL+D+E E+K
Sbjct: 469 TGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEK 528

Query: 569 EDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIR 628
           E+ +  HSEKLAI + L+    G  IR+ KNLR+C DCHT  K+ +K+E + I++RD  R
Sbjct: 529 EEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNR 588

Query: 629 YHHFQDGNCSCGDYW 643
           +H F DG CSC DYW
Sbjct: 589 FHCFNDGLCSCKDYW 603


>gi|297805646|ref|XP_002870707.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316543|gb|EFH46966.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 517

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/517 (39%), Positives = 324/517 (62%), Gaps = 8/517 (1%)

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE--GVRPNMFTYSAVLRACDSLIILR 192
           MPER++V+W ++IS Y       K  E+L  M+R   G RPN  T+ +++ AC       
Sbjct: 1   MPERDLVAWNSLISGYAGRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKE 60

Query: 193 Q---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
           +   +H  ++K G   +V V +AL+++Y K G+L ++  +F ++  ++LV WN++I    
Sbjct: 61  EGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHL 120

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL--KYDHDLI 307
           QN   +E L  +   +  G   DQ+T  +VLR C  + ++ L   +H  ++   ++ +  
Sbjct: 121 QNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTC 180

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           +  ALLD+Y K G LED+ +VF  +   D ++W+ M++  A +GY ++A+K FE M    
Sbjct: 181 ITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYG 240

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427
           + P+++T   +L ACSH+G VE+G  +F++M K Y I+P  +HYSCM+DL+GR+G LQ+A
Sbjct: 241 LSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDA 300

Query: 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487
             LI EMP EP +  W ALLGAC+V+++T L   AAK++  L+P+D   YI+LSNIY+ S
Sbjct: 301 YGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSAS 360

Query: 488 QKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL 547
             W + + +R  M+ +G+ +  G S+IE   +IH F V D SHP+ +KI K LK + +K+
Sbjct: 361 GLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKM 420

Query: 548 VG-VGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606
              +G+   T +VL D++ + KE+ I  HSEK+A+ FGL+ ++  + I IRKNLRICGDC
Sbjct: 421 KSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLRICGDC 480

Query: 607 HTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           H  AK  + +E + I+IRD  R+HHF +G+CSC DYW
Sbjct: 481 HETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 517



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 138/270 (51%), Gaps = 6/270 (2%)

Query: 69  GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEA 128
           G R + VT+  +I  C+     EE   +H  V+  G   E  +VN L+N++ K   L  +
Sbjct: 38  GFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISS 97

Query: 129 QVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188
             LF+ +  +N+VSW TMI  +    + ++ L         G++P+  T+ AVLR C+ +
Sbjct: 98  CKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDI 157

Query: 189 IILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245
            ++R    +H  I+  GF ++  + +AL+D+YAKLG L ++  VF E+ + D + W +++
Sbjct: 158 GVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAML 217

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT---QVHVHVLKY 302
             +A +    +A+  ++ M   G + D  T T +L AC+   L+E G    +      + 
Sbjct: 218 AAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRI 277

Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
           +  L   + ++D+  + G L+DA  +   M
Sbjct: 278 EPRLDHYSCMVDLMGRSGLLQDAYGLIKEM 307


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/619 (37%), Positives = 343/619 (55%), Gaps = 69/619 (11%)

Query: 94  KLVHNHVLSGGFEPETFLVNILLNMHVK--FSLLEEAQVLFDQMPERNVVSWTTMISAYC 151
           K VH   L  G   + ++   L+  +    FS L  A  +F+ +P  NV  +  +I    
Sbjct: 47  KQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCL 106

Query: 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVF 208
                 KA+     M+    RPN FTY  + +AC +        Q+H  +IK G   DV 
Sbjct: 107 QNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVH 166

Query: 209 VRS-------------------------------ALIDIYAKLGELRNAE---------- 227
           +RS                               A+ID Y K GE+  A+          
Sbjct: 167 IRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKN 226

Query: 228 -------------C--------VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
                        C        +FNEM  ++ + W+++I G+ +     EAL ++  M+R
Sbjct: 227 VGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQR 286

Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH--DLILNNALLDMYCKCGSLED 324
                 +  L+SVL AC  L  L+ G  +H +V    +  D +L  AL+DMY KCG L+ 
Sbjct: 287 EEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDM 346

Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
           A  VF +M +K+V +W+ MI GL  +G +++A++LF  M+  + +PN IT++GVL AC+H
Sbjct: 347 AWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAH 406

Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR 444
           +G V++G   F SM++ YGI+PG EHY C++DLLGRAG L EA ++++ MP EP A  W 
Sbjct: 407 SGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWG 466

Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
           ALLGAC+ H + +L     K +L L+PQ+ G Y LLSNIYA + +WD+VA VRK M+ RG
Sbjct: 467 ALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERG 526

Query: 505 ITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLE 564
           +    G S I+ +  +H F + D SHPQ+  I   LK++I++L   G++P+T+ VL D+E
Sbjct: 527 VKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIE 586

Query: 565 GEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIR 624
            E+KE  +QYHSEKLAI FGL++   G TI + KNLR+C DCH+  KL +++ ++ I++R
Sbjct: 587 EEEKEAELQYHSEKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVR 646

Query: 625 DPIRYHHFQDGNCSCGDYW 643
           D  RYHHF+ G CSC D+W
Sbjct: 647 DRARYHHFKTGTCSCKDFW 665



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 147/345 (42%), Gaps = 70/345 (20%)

Query: 183 RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK--LGELRNAECVFNEMPTRDLVV 240
           ++  SL  L+Q+H   ++ G   D +V   L+  YA      L  A  VF  +P  ++ V
Sbjct: 38  KSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFV 97

Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
           +N II G  QN++  +A+  Y +M  A    ++ T  ++ +ACT     E G QVH HV+
Sbjct: 98  FNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVI 157

Query: 301 KY---------------------------------DHDLILNNALLDMYCKCGS------ 321
           K                                  + D+I  NA++D Y KCG       
Sbjct: 158 KQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKE 217

Query: 322 -------------------------LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
                                    +E+A  +F+ M +K+ ISWS MI G  + GY +EA
Sbjct: 218 LFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEA 277

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMI 415
           L++F  M+   I+P    +  VL AC++ G ++ G W H          D      + ++
Sbjct: 278 LEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLG--TALV 335

Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460
           D+  + G+L  A  +  +M  + +  TW A++    +H   + AI
Sbjct: 336 DMYAKCGRLDMAWDVFEKME-KKEVFTWNAMICGLGMHGRAEDAI 379



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 8/221 (3%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           S+++D + +  Y ++   A++  + MQ   +R      + ++  C    A+++ + +H +
Sbjct: 262 SAMIDGYIKGGYYKE---ALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAY 318

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           V +     +  L   L++M+ K   L+ A  +F++M ++ V +W  MI         + A
Sbjct: 319 VNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDA 378

Query: 160 LELLIFMLREGVRPNMFTYSAVLRAC-DSLII---LRQLHCGIIKVGFESDVFVRSALID 215
           +EL   M ++  RPN  T   VL AC  S ++   LR  +      G E  +     ++D
Sbjct: 379 IELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVD 438

Query: 216 IYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVD 255
           +  + G L  AE V   MP      VW +++G   ++ DV+
Sbjct: 439 LLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVE 479


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/629 (35%), Positives = 354/629 (56%), Gaps = 14/629 (2%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAEL 80
           F +     V S NT+    S+  D    F    D+ R M A        V+AD VT    
Sbjct: 350 FKMNNNKNVVSWNTMVGGFSAEGDTHGTF----DVLRQMLA----GGEDVKADEVTILNA 401

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
           +  C     +   K +H + L   F     + N  +  + K   L  AQ +F  +  + V
Sbjct: 402 VPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTV 461

Query: 141 VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCG 197
            SW  +I  +  +     +L+  + M   G+ P+ FT  ++L AC  L  LR   ++H  
Sbjct: 462 NSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGF 521

Query: 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEA 257
           II+   E D+FV  +++ +Y   GEL   + +F+ M  + LV WN++I G+ QN   D A
Sbjct: 522 IIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRA 581

Query: 258 LNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY--DHDLILNNALLDM 315
           L ++++M   G      ++  V  AC+ L  L LG + H + LK+  + D  +  +L+DM
Sbjct: 582 LGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDM 641

Query: 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITI 375
           Y K GS+  +  VF+ + +K   SW+ MI G   +G ++EA+KLFE M+ +   P+ +T 
Sbjct: 642 YAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTF 701

Query: 376 VGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI-HEM 434
           +GVL AC+H+G + +G  +   MK  +G+ P  +HY+C+ID+LGRAG+L +A++++  EM
Sbjct: 702 LGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEM 761

Query: 435 PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494
             E D   W++LL +C++H+N ++    A K+  L+P+ P  Y+LLSN+YA   KW++V 
Sbjct: 762 SEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVR 821

Query: 495 EVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAP 554
           +VR+ M    + K+ GCSWIE+N+++ +F V +      ++I      L  K+  +GY P
Sbjct: 822 KVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRP 881

Query: 555 DTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTA 614
           DT  V  DL  E+K + ++ HSEKLA+ +GL+  ++G TIR+ KNLRIC DCH  AKL +
Sbjct: 882 DTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLIS 941

Query: 615 KMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           K+  + IV+RD  R+HHF++G CSCGDYW
Sbjct: 942 KVMEREIVVRDNKRFHHFKNGVCSCGDYW 970



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 188/390 (48%), Gaps = 29/390 (7%)

Query: 80  LIKCCLARHAVEEAKLVHNHVLSGG--FEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE 137
           L++    R  +E  + +H  ++SG      +  L   ++ M+      ++++ +FD +  
Sbjct: 90  LLQASGKRKDIEMGRKIH-QLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRS 148

Query: 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLRE-GVRPNMFTYSAVLRACDSLI---ILRQ 193
           +N+  W  +IS+Y   ++ D+ LE  I M+    + P+ FTY  V++AC  +    I   
Sbjct: 149 KNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLA 208

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H  ++K G   DVFV +AL+  Y   G + +A  +F+ MP R+LV WNS+I  F+ N  
Sbjct: 209 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGF 268

Query: 254 VDEALNLYKRMKR----AGFAADQSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLI 307
            +E+  L   M        F  D +TL +VL  C     + LG  VH     L+ D +L+
Sbjct: 269 SEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELV 328

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS- 366
           LNNAL+DMY KCG + +A  +F     K+V+SW+TM+ G +  G +     +   M    
Sbjct: 329 LNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGG 388

Query: 367 -RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY------SCMIDLLG 419
             +K + +TI+  +  C H  F+        S+K+ +     +E        +  +    
Sbjct: 389 EDVKADEVTILNAVPVCFHESFL-------PSLKELHCYSLKQEFVYNELVANAFVASYA 441

Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
           + G L  A ++ H +  +    +W AL+G 
Sbjct: 442 KCGSLSYAQRVFHGIRSKT-VNSWNALIGG 470


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/520 (40%), Positives = 319/520 (61%), Gaps = 9/520 (1%)

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV-RPNMFTYSAVLRACDSLI 189
           LFDQ+P+     + ++I A   A  +  AL +   MLR G  RPN FT +  L+AC ++ 
Sbjct: 131 LFDQIPDPTAFCYNSLIRAL-PAAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACAAVP 189

Query: 190 IL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT-RDLVVWNSII 245
                RQLH   ++ G  +  +V++ L+++YAK  ++  A  VF+ M   ++LV W++++
Sbjct: 190 APGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMV 249

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YD 303
            G+++   V+EAL L++ M+  G   D+ T+ SV+ AC     L+LG  VH ++ +    
Sbjct: 250 SGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGIT 309

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            DL L+ AL+DMY KCG +E A  VF  M++KD  +WS MI G A +G  ++AL LF  M
Sbjct: 310 VDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRM 369

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
              +++PN +T +GVL AC+H+G VEDG  ++  M+   GI P  E+Y CM+DLL R+G 
Sbjct: 370 LELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNL-GIKPSMENYGCMVDLLCRSGL 428

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L +A   +  MP  P++V WR LL ACK     D+A  A K++L L+P +P  Y+LLSN+
Sbjct: 429 LDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLSNL 488

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           YA++ +WD V+ +R+ M+ + +T   G S IE+N  +H F V+D SHP+I +I   L+ +
Sbjct: 489 YASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLREM 548

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
             ++   G+ P T  VL D+  E+KE ++  HSE+LAI +GL+       IR+ KNLR C
Sbjct: 549 ADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLRFC 608

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            DCH  AK+ +K  N+ IV+RD +R+H F  G+CSC D+W
Sbjct: 609 LDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 157/324 (48%), Gaps = 16/324 (4%)

Query: 37  RNSSSLLDDFTRFCYQ---RDLPRAMKA------MHAMQCHGVRADSVTYAELIKCCLAR 87
           RN    + D T FCY    R LP A  A         ++    R +S T A  +K C A 
Sbjct: 129 RNLFDQIPDPTAFCYNSLIRALPAAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACAAV 188

Query: 88  HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP-ERNVVSWTTM 146
            A  E + +H   L  G     ++   LLN++ K   +  A+ +FD M  ++N+V+W+ M
Sbjct: 189 PAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAM 248

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGF 203
           +S Y    M ++AL L   M   GV P+  T  +V+ AC    +L + + +H  I + G 
Sbjct: 249 VSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGI 308

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
             D+ + +ALID+YAK G +  A  VF+ M  +D   W+++I GFA +  V++AL L+ R
Sbjct: 309 TVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSR 368

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGS 321
           M       +  T   VL AC    L+E G +    +  L     +     ++D+ C+ G 
Sbjct: 369 MLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGL 428

Query: 322 LEDAMS-VFSRMIQKDVISWSTMI 344
           L+DA S V    +  + + W T++
Sbjct: 429 LDDAYSFVIGMPVSPNSVIWRTLL 452



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 4/211 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     MQ  GV  D VT   +I  C    A++  K VH ++   G   +  L   L++
Sbjct: 261 ALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALID 320

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K  L+E A+ +FD M E++  +W+ MI  +    + + AL L   ML   VRPN  T
Sbjct: 321 MYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVT 380

Query: 178 YSAVLRAC--DSLIILRQLHCGIIK-VGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +  VL AC    L+   + +  I++ +G +  +     ++D+  + G L +A      MP
Sbjct: 381 FIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMP 440

Query: 235 -TRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
            + + V+W +++     ++ +D A +  KR+
Sbjct: 441 VSPNSVIWRTLLVACKSSNRIDIAESATKRL 471


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/602 (36%), Positives = 343/602 (56%), Gaps = 19/602 (3%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++    M   G++A       ++  C +   V++ +L+H+ +   GFE E  + N ++ 
Sbjct: 231 ALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMT 290

Query: 118 MHVKFSLLEEAQVLFDQMPE--RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
           M+ +   +EEA+ +FD M E  R+VVSW  M+SAY     ND+  + +    R  +R + 
Sbjct: 291 MYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVH---NDRGKDAIQLYQRMQLRADK 347

Query: 176 FTYSAVLRACDS---LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
            TY ++L AC S   + + R LH  I+    E +V V +AL+ +YAK G    A  VF++
Sbjct: 348 VTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDK 407

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM---KRAGFA----ADQSTLTSVLRACTG 285
           M  R ++ W +II  + +   V EA +L+++M   ++ G +     D     ++L AC  
Sbjct: 408 MEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACAD 467

Query: 286 LALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK-DVISWST 342
           ++ LE G  V           D  +  A++++Y KCG +E+   +F  +  + DV  W+ 
Sbjct: 468 VSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNA 527

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           MI+  AQ G S EALKLF  M++  ++P+  + V +L ACSH G  + G ++F SM   Y
Sbjct: 528 MIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEY 587

Query: 403 -GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
             +    +H+ C+ DLLGR G+L+EA + + ++P +PDAV W +LL AC+ HR+   A  
Sbjct: 588 RNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKE 647

Query: 462 AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIH 521
            A K+L L+P+    Y+ LSNIYA  QKW  VA+VRK M  +G+ KE G S IE+ K +H
Sbjct: 648 VANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMH 707

Query: 522 AFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAI 581
            F   D +HP+  +I + L  L  ++   GY PDT  VL  ++ ++KE  +  HSE+LAI
Sbjct: 708 DFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAI 767

Query: 582 VFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641
             GL+S   G  +R+ KNLR+C DCHT  KL +K+  + IV+RDP R+H F+DG CSC D
Sbjct: 768 ALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQD 827

Query: 642 YW 643
           YW
Sbjct: 828 YW 829



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/405 (29%), Positives = 207/405 (51%), Gaps = 19/405 (4%)

Query: 59  MKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118
           ++A+  M+  GVR D+VT+   +  C    ++ +   +H  V+    E +  + N LLNM
Sbjct: 130 LRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNM 189

Query: 119 HVKFSLLEEAQVLFDQMPE-RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           + K   L  A+ +F +M   RNV+SW+ M  A+       +AL    FML  G++     
Sbjct: 190 YKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSA 249

Query: 178 YSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM- 233
              +L AC S  ++   R +H  I   GFES++ V +A++ +Y + G +  A  VF+ M 
Sbjct: 250 MVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMD 309

Query: 234 -PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
              RD+V WN ++  +  N    +A+ LY+RM+     AD+ T  S+L AC+    + LG
Sbjct: 310 EALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQ---LRADKVTYVSLLSACSSAEDVGLG 366

Query: 293 TQVHVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
             +H  ++  + + ++I+ NAL+ MY KCGS  +A +VF +M Q+ +ISW+T+IS   + 
Sbjct: 367 RVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRR 426

Query: 351 GYSQEALKLFESM-------KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403
               EA  LF+ M          R+KP+ +  V +L AC+    +E G           G
Sbjct: 427 RLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQG-KMVSEQAASCG 485

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLG 448
           +   +   + +++L G+ G+++E  ++   +   PD   W A++ 
Sbjct: 486 LSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIA 530



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 190/330 (57%), Gaps = 12/330 (3%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV-NILLNMHVKFS 123
           ++   VRA++ TYA L++ C    A+ E + +H+  +     P   ++ N +++M+    
Sbjct: 34  LEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCD 93

Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
              +A+  FD + +RN+ SWT +++A+  +  + + L  L  M ++GVRP+  T+   L 
Sbjct: 94  SPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALG 153

Query: 184 ACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP-TRDLV 239
           +C     LR   ++H  ++    E D  V +AL+++Y K G L +A+ VF +M  TR+++
Sbjct: 154 SCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVI 213

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--V 297
            W+ + G  A + +V EAL  ++ M   G  A +S + ++L AC+  AL++ G  +H  +
Sbjct: 214 SWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCI 273

Query: 298 HVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--KDVISWSTMISGLAQNGYSQE 355
            +  ++ +L++ NA++ MY +CG++E+A  VF  M +  +DV+SW+ M+S    N   ++
Sbjct: 274 ALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKD 333

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHA 385
           A++L++ M+   ++ + +T V +L ACS A
Sbjct: 334 AIQLYQRMQ---LRADKVTYVSLLSACSSA 360



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 152/306 (49%), Gaps = 16/306 (5%)

Query: 57  RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
           R   A+   Q   +RAD VTY  L+  C +   V   +++H  +++   E    + N L+
Sbjct: 330 RGKDAIQLYQRMQLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALV 389

Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLR-------E 169
           +M+ K     EA+ +FD+M +R+++SWTT+ISAY   ++  +A  L   ML        +
Sbjct: 390 SMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQ 449

Query: 170 GVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
            V+P+   +  +L AC  +  L Q   +       G  SD  V +A++++Y K GE+   
Sbjct: 450 RVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEG 509

Query: 227 ECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG 285
             +F+ + +R D+ +WN++I  +AQ     EAL L+ RM+  G   D  +  S+L AC+ 
Sbjct: 510 RRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSH 569

Query: 286 LALLELG----TQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISW 340
             L + G    T +          +     + D+  + G L++A     ++ ++ D ++W
Sbjct: 570 TGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAW 629

Query: 341 STMISG 346
           +++++ 
Sbjct: 630 TSLLAA 635



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 106/209 (50%), Gaps = 11/209 (5%)

Query: 252 SDVDEA-LNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD---HDLI 307
           SD+  A L+L K+  RA    + +T   +L+ C     L  G ++H   +K++    +LI
Sbjct: 25  SDIASAVLDLEKQAVRA----ENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLI 80

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           L N ++ MY  C S  DA + F  + Q+++ SW+ +++  A +G S+E L+  E M+   
Sbjct: 81  LGNHIVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDG 140

Query: 368 IKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426
           ++P+ +T +  L +C     + DG   H   +     IDP  +  + ++++  + G L  
Sbjct: 141 VRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDP--KVSNALLNMYKKCGSLSH 198

Query: 427 AVKLIHEMPYEPDAVTWRALLGACKVHRN 455
           A ++  +M    + ++W  + GA  +H N
Sbjct: 199 AKRVFAKMERTRNVISWSIMAGAHALHGN 227


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/526 (38%), Positives = 313/526 (59%), Gaps = 5/526 (0%)

Query: 37  RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLV 96
           RNS S     + +  Q+    A+     M+      +   +  ++        V   K +
Sbjct: 172 RNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQI 231

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H   +  G      + N L+ M+ K   L++A   F+   ++N ++W+ MI+ Y  +  +
Sbjct: 232 HCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDS 291

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSAL 213
           DKAL+L   M   G+RP+ FT+  V+ AC  L      +Q+H  ++K+GFES ++V +AL
Sbjct: 292 DKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTAL 351

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           +D+YAK   + +A   F+ +   D+V+W S+IGG+ QN + ++AL+LY RM+  G   ++
Sbjct: 352 VDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNE 411

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSR 331
            T+ SVL+AC+ LA LE G Q+H   +KY   L   + +AL  MY KCG L+D   VF R
Sbjct: 412 LTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRR 471

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           M  +DVISW+ MISGL+QNG  +EAL+LFE M++   KP+Y+T V +L ACSH G VE G
Sbjct: 472 MPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERG 531

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451
           W +F+ M   +G+DP  EHY+CM+D+L RAGKL+EA++       +     WR +LGAC+
Sbjct: 532 WGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACR 591

Query: 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGC 511
            +RN +L   A +K++ L  Q+   Y+LLS+IY+   +W++V  VR+ M+ RG++KEPGC
Sbjct: 592 NYRNYELGAYAGEKLMELGSQESSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKEPGC 651

Query: 512 SWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTN 557
           SWIE+   +H F V D  HPQI  I+  L+ L +++   GY P T+
Sbjct: 652 SWIELKSGVHVFVVKDQMHPQIGDIHVELRQLSKQMKDEGYEPATD 697



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/381 (34%), Positives = 204/381 (53%), Gaps = 38/381 (9%)

Query: 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167
           + F+ + L+NM+ K  L  EA+ +FD MPERN VSW TMIS Y   K+  +AL L   M 
Sbjct: 142 DVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMR 201

Query: 168 REGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
           RE    N F +++VL A     ++   +Q+HC  +K G  S V V +AL+ +YAK G L 
Sbjct: 202 REEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLD 261

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
           +A   F     ++ + W+++I G+AQ+ D D+AL L+  M  +G    + T   V+ AC+
Sbjct: 262 DALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACS 321

Query: 285 GLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            L     G QVH ++LK  ++  + +  AL+DMY KC S+ DA   F  + + D++ W++
Sbjct: 322 DLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTS 381

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-HFKSMKKF 401
           MI G  QNG +++AL L+  M++  I PN +T+  VL ACS    +E G   H +++K  
Sbjct: 382 MIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYG 441

Query: 402 YGID---------------------------PGRE--HYSCMIDLLGRAGKLQEAVKLIH 432
           +G++                           P R+   ++ MI  L + G  +EA++L  
Sbjct: 442 FGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFE 501

Query: 433 EMPYE---PDAVTWRALLGAC 450
           EM  E   PD VT+  +L AC
Sbjct: 502 EMQLEGTKPDYVTFVNILSAC 522



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/368 (33%), Positives = 195/368 (52%), Gaps = 10/368 (2%)

Query: 89  AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMIS 148
           ++++ K +H  ++        ++ N L+N++ K   L EA+ +F+++  ++VVSW  +I+
Sbjct: 21  SLQKGKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIIN 79

Query: 149 AYCD--AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGF 203
            Y       +   +EL   M  E   PN  T++ V  A  +L+     R  H   IK+  
Sbjct: 80  GYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDS 139

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
             DVFV S+L+++Y K G    A  VF+ MP R+ V W ++I G+A      EAL L++ 
Sbjct: 140 CRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRL 199

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN--NALLDMYCKCGS 321
           M+R     ++   TSVL A T   L+  G Q+H   +K     I++  NAL+ MY KCGS
Sbjct: 200 MRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGS 259

Query: 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381
           L+DA+  F     K+ I+WS MI+G AQ+G S +ALKLF SM +S I+P+  T VGV+ A
Sbjct: 260 LDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINA 319

Query: 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAV 441
           CS  G   +G      + K  G +      + ++D+  +   + +A K    +  EPD V
Sbjct: 320 CSDLGAAWEGKQVHDYLLKL-GFESQIYVMTALVDMYAKCSSIVDARKGFDYLQ-EPDIV 377

Query: 442 TWRALLGA 449
            W +++G 
Sbjct: 378 LWTSMIGG 385


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/520 (40%), Positives = 319/520 (61%), Gaps = 9/520 (1%)

Query: 131 LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV-RPNMFTYSAVLRACDSLI 189
           LFDQ+P+     + ++I A   A  +  AL +   MLR G  RPN FT +  L+AC ++ 
Sbjct: 82  LFDQIPDPTAFCYNSLIRAL-PAAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACAAVP 140

Query: 190 IL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT-RDLVVWNSII 245
                RQLH   ++ G  +  +V++ L+++YAK  ++  A  VF+ M   ++LV W++++
Sbjct: 141 APGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMV 200

Query: 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YD 303
            G+++   V+EAL L++ M+  G   D+ T+ SV+ AC     L+LG  VH ++ +    
Sbjct: 201 SGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGIT 260

Query: 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            DL L+ AL+DMY KCG +E A  VF  M++KD  +WS MI G A +G  ++AL LF  M
Sbjct: 261 VDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRM 320

Query: 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423
              +++PN +T +GVL AC+H+G VEDG  ++  M+   GI P  E+Y CM+DLL R+G 
Sbjct: 321 LELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNL-GIKPSMENYGCMVDLLCRSGL 379

Query: 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
           L +A   +  MP  P++V WR LL ACK     D+A  A K++L L+P +P  Y+LLSN+
Sbjct: 380 LDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYVLLSNL 439

Query: 484 YANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHL 543
           YA++ +WD V+ +R+ M+ + +T   G S IE+N  +H F V+D SHP+I +I   L+ +
Sbjct: 440 YASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLREM 499

Query: 544 IQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRIC 603
             ++   G+ P T  VL D+  E+KE ++  HSE+LAI +GL+       IR+ KNLR C
Sbjct: 500 ADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLRFC 559

Query: 604 GDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            DCH  AK+ +K  N+ IV+RD +R+H F  G+CSC D+W
Sbjct: 560 LDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 599



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 157/324 (48%), Gaps = 16/324 (4%)

Query: 37  RNSSSLLDDFTRFCYQ---RDLPRAMKA------MHAMQCHGVRADSVTYAELIKCCLAR 87
           RN    + D T FCY    R LP A  A         ++    R +S T A  +K C A 
Sbjct: 80  RNLFDQIPDPTAFCYNSLIRALPAAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACAAV 139

Query: 88  HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP-ERNVVSWTTM 146
            A  E + +H   L  G     ++   LLN++ K   +  A+ +FD M  ++N+V+W+ M
Sbjct: 140 PAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAM 199

Query: 147 ISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGF 203
           +S Y    M ++AL L   M   GV P+  T  +V+ AC    +L + + +H  I + G 
Sbjct: 200 VSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGI 259

Query: 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKR 263
             D+ + +ALID+YAK G +  A  VF+ M  +D   W+++I GFA +  V++AL L+ R
Sbjct: 260 TVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSR 319

Query: 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGS 321
           M       +  T   VL AC    L+E G +    +  L     +     ++D+ C+ G 
Sbjct: 320 MLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGL 379

Query: 322 LEDAMS-VFSRMIQKDVISWSTMI 344
           L+DA S V    +  + + W T++
Sbjct: 380 LDDAYSFVIGMPVSPNSVIWRTLL 403



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 4/211 (1%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A+     MQ  GV  D VT   +I  C    A++  K VH ++   G   +  L   L++
Sbjct: 212 ALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALID 271

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M+ K  L+E A+ +FD M E++  +W+ MI  +    + + AL L   ML   VRPN  T
Sbjct: 272 MYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVT 331

Query: 178 YSAVLRAC--DSLIILRQLHCGIIK-VGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
           +  VL AC    L+   + +  I++ +G +  +     ++D+  + G L +A      MP
Sbjct: 332 FIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMP 391

Query: 235 -TRDLVVWNSIIGGFAQNSDVDEALNLYKRM 264
            + + V+W +++     ++ +D A +  KR+
Sbjct: 392 VSPNSVIWRTLLVACKSSNRIDIAESATKRL 422


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/586 (37%), Positives = 335/586 (57%), Gaps = 38/586 (6%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  +L  G          L++ + K  LL +A  LFD+ P R++  ++++++A   +  
Sbjct: 107 MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSAS 166

Query: 156 NDKALELLIFMLR-EGVRPNMFTYSAV---LRACDSLIILRQLHCGIIKVGFESDVFVRS 211
            + AL +L  ML  + + P+ F  S+V        S  + RQLH   +   +  D  V+S
Sbjct: 167 PELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKS 226

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK--------- 262
           +L+D+Y K G   +   VF+ M  ++ VVW +++ G+A N   +EAL L++         
Sbjct: 227 SLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFA 286

Query: 263 ----------------------RMKRAGFAADQS-TLTSVLRACTGLALLELGTQVHVHV 299
                                  M+R G   D +  L+ V+     LA   LG Q+H   
Sbjct: 287 WTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGST 346

Query: 300 LK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           ++  +  ++I+ NAL+DMY KC  +  A  VF  +  +DVISW+TM+ G AQ+G ++EAL
Sbjct: 347 MRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEAL 406

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
            L++ M ++  KPN +T VG+++ACSHAG V+ G   F+SMK  YGI P  +HY+C +DL
Sbjct: 407 ALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDL 466

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           L R+G L EA +L+  MPYEPD  TW ALL AC  +++ ++ I  + K+L L P+D  TY
Sbjct: 467 LSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTY 526

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           ILLSN+YA + KWD VA+VRK M    I KEPG SWIE  ++   F+  +      ++I 
Sbjct: 527 ILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIM 586

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
             L+ ++ ++   GY PDT+ V+ DLE  +KE  +  HSE+LA+ FGL+    G  IR+ 
Sbjct: 587 VFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVV 646

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLR+C DCHT  KL +++ ++ IV+RD  R+HHF+ G CSC ++W
Sbjct: 647 KNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 692



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 107/202 (52%), Gaps = 3/202 (1%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           +R +H  I+K G        +AL+  YAK   L +A  +F+E P RD+ +++S++   + 
Sbjct: 104 VRGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSH 163

Query: 251 NSDVDEALNLYKRMKRA-GFAADQSTLTSVLRACTGLALLELGTQVHVH--VLKYDHDLI 307
           ++  + AL + + M  A     D   ++SV      L    LG Q+H H  V  Y+ D +
Sbjct: 164 SASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDV 223

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + ++L+DMYCKCGS +D   VF  M  K+ + W+ ++SG A NG S+EAL+LF SM    
Sbjct: 224 VKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRN 283

Query: 368 IKPNYITIVGVLFACSHAGFVE 389
           +      I G++      G VE
Sbjct: 284 LFAWTALISGLVNTGESVGAVE 305



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 21/185 (11%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
            + +H   +  GF     + N L++M+ K S +  A+ +F+ +  R+V+SWTTM+     
Sbjct: 339 GRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQ 398

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVG---FES---- 205
               ++AL L   M+  G +PN  T+  ++ AC         H G+++ G   FES    
Sbjct: 399 HGRAEEALALYDRMVLAGAKPNEVTFVGLIYACS--------HAGLVQKGRQLFESMKNE 450

Query: 206 -DVFVR----SALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALN 259
             +  R    +  +D+ ++ G L  AE +   MP   D   W +++    +  D +  + 
Sbjct: 451 YGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIR 510

Query: 260 LYKRM 264
           +  ++
Sbjct: 511 ISDKL 515


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/544 (40%), Positives = 315/544 (57%), Gaps = 39/544 (7%)

Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGV---RPNMFTYSAVLRACDSLIIL---R 192
            V  + T I  +  A+     L  ++  +R GV    PN FT++ + + C + +     R
Sbjct: 53  TVFLFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGR 112

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS--------- 243
           Q H  +IK  FE DVFVR+++I  Y+  G L +A  VF+E    D+V WNS         
Sbjct: 113 QFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNG 172

Query: 244 ----------------------IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
                                 +I G+AQN    EAL L++ M+      + + L SVL 
Sbjct: 173 NILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLS 232

Query: 282 ACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
           AC+ L  L+ G  VH ++ K     D IL+ AL+DMY KCGS++ AM  FS   ++DV +
Sbjct: 233 ACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSA 292

Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
           ++  ISGLA NG S+EAL+LFE MK   I P+ ++ + VL ACSHAG+VE G+++F SM 
Sbjct: 293 YTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMS 352

Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
             +GI P  +HY+CM+DLLGRAG L+EA K +  MP +PD V W ALLGAC+V+ N ++ 
Sbjct: 353 DVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMG 412

Query: 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQ 519
                 ++  D    G YILLSNIYA S K ++  +VRKTMR R + + PGCS IEV   
Sbjct: 413 QRVGSLLVESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGF 472

Query: 520 IHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKL 579
           +H F   D SH + ++I    + +++++   GY  +T  V+ D+E E+KE  I +HSEKL
Sbjct: 473 VHEFFSGDRSHEKTEEIYLMWEEIVKEIKKFGYREETRAVVFDVEEEEKEAVIGHHSEKL 532

Query: 580 AIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
           A+ FG +    G T+RI KN+RIC DCH   KL +K+  + I IRD   +HHF++G CSC
Sbjct: 533 AVAFGFLYTKSGSTLRIVKNIRICSDCHYAIKLVSKVFKRKIAIRDRKCFHHFEEGLCSC 592

Query: 640 GDYW 643
            DYW
Sbjct: 593 KDYW 596



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 152/374 (40%), Gaps = 54/374 (14%)

Query: 24  TITPP-VASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIK 82
           T TPP V   NT  R        F+R      L  ++     M    +  ++ T+  L +
Sbjct: 48  TSTPPTVFLFNTTIRG-------FSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQ 100

Query: 83  CCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ-------- 134
            C    A +  +  H  V+   FE + F+ N ++  +     L +A+ +FD+        
Sbjct: 101 GCSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVS 160

Query: 135 -----------------------MPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV 171
                                  M ERN +SW  MIS Y       +AL L   M     
Sbjct: 161 WNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQ 220

Query: 172 RPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
            PN     +VL AC  L  L     +HC I K     D  + +ALID+YAK G +  A  
Sbjct: 221 EPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQ 280

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
            F+    RD+  + + I G A N   +EAL L+++MK  G + D  +  +VL AC+    
Sbjct: 281 AFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGW 340

Query: 289 LELG-------TQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISW 340
           +E G       + VH    + DH       ++D+  + G LE+A    + M I+ D + W
Sbjct: 341 VEKGFHYFASMSDVHGIRPELDH----YACMVDLLGRAGLLEEAEKFVASMPIKPDNVIW 396

Query: 341 STMISGLAQNGYSQ 354
             ++      G ++
Sbjct: 397 GALLGACRVYGNAE 410


>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/531 (38%), Positives = 322/531 (60%), Gaps = 9/531 (1%)

Query: 122 FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
           F  L  A++L    P  N   + T++ A+    +       L   L     P+ FT+  +
Sbjct: 42  FGDLNYARLLLSTNPTLNSYYYNTLLRAFSQTPLPTPPFHALSLFLSMPSPPDNFTFPFL 101

Query: 182 LRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
           L+ C    +    +QLH  + K+GF  D+++++ L+ +Y++ G+L  A  +F+ MP RD+
Sbjct: 102 LKCCSRSKLPPLGKQLHALLTKLGFAPDLYIQNVLLHMYSEFGDLLLARSLFDRMPHRDV 161

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           V W S+IGG   +    EA+NL++RM + G   +++T+ SVLRAC     L +G +VH +
Sbjct: 162 VSWTSMIGGLVNHDLPVEAINLFERMLQCGVEVNEATVISVLRACADSGALSMGRKVHAN 221

Query: 299 VLKYDHDL----ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQ 354
           + ++  ++     ++ AL+DMY K G +  A  VF  ++ +DV  W+ MISGLA +G  +
Sbjct: 222 LEEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDDVVHRDVFVWTAMISGLASHGLCK 281

Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414
           +A+ +F  M+ S +KP+  T+  VL AC +AG + +G+  F  +++ YG+ P  +H+ C+
Sbjct: 282 DAIDMFVDMESSGVKPDERTVTAVLTACRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCL 341

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAK--KILNLDPQ 472
           +DLL RAG+L+EA   ++ MP EPD V WR L+ ACKVH + D A    K  +I ++   
Sbjct: 342 VDLLARAGRLKEAEDFVNAMPIEPDTVLWRTLIWACKVHGDADRAERLMKHLEIQDMRAD 401

Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
           D G+YIL SN+YA++ KW   AEVR+ M  +G+ K PG S IEV+  +H F + D +HP+
Sbjct: 402 DSGSYILASNVYASTGKWCNKAEVRELMNKKGLVKPPGTSRIEVDGGVHEFVMGDYNHPE 461

Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
            ++I   L  ++ K+   GY P  + VL +++ E+K   + +HSEKLA+ +GL+ +  G 
Sbjct: 462 AEEIFVELAEVVDKIRKEGYDPRVSEVLLEMDDEEKAVQLLHHSEKLALAYGLIRIGHGS 521

Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           TIRI KNLR C DCH F KL +K+  + I++RD IR+HHF++G CSC DYW
Sbjct: 522 TIRIVKNLRSCEDCHEFMKLISKIYKRDIIVRDRIRFHHFKNGECSCKDYW 572



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 170/308 (55%), Gaps = 9/308 (2%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D+ T+  L+KCC         K +H  +   GF P+ ++ N+LL+M+ +F  L  A+ LF
Sbjct: 94  DNFTFPFLLKCCSRSKLPPLGKQLHALLTKLGFAPDLYIQNVLLHMYSEFGDLLLARSLF 153

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLI 189
           D+MP R+VVSWT+MI    +  +  +A+ L   ML+ GV  N  T  +VLRAC    +L 
Sbjct: 154 DRMPHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQCGVEVNEATVISVLRACADSGALS 213

Query: 190 ILRQLHCGIIKVGFE--SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGG 247
           + R++H  + + G E  S   V +AL+D+YAK G + +A  VF+++  RD+ VW ++I G
Sbjct: 214 MGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDDVVHRDVFVWTAMISG 273

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHV-LKYDHDL 306
            A +    +A++++  M+ +G   D+ T+T+VL AC    L+  G  +   V  +Y    
Sbjct: 274 LASHGLCKDAIDMFVDMESSGVKPDERTVTAVLTACRNAGLIREGFMLFSDVQRRYGMKP 333

Query: 307 ILNN--ALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESM 363
            + +   L+D+  + G L++A    + M I+ D + W T+I     +G +  A +L + +
Sbjct: 334 SIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDTVLWRTLIWACKVHGDADRAERLMKHL 393

Query: 364 KVSRIKPN 371
           ++  ++ +
Sbjct: 394 EIQDMRAD 401



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 112/239 (46%), Gaps = 27/239 (11%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE--PETFLVNILLNMHVKF 122
           +QC GV  +  T   +++ C    A+   + VH ++   G E   ++ +   L++M+ K 
Sbjct: 188 LQC-GVEVNEATVISVLRACADSGALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYAKG 246

Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
             +  A+ +FD +  R+V  WT MIS      +   A+++ + M   GV+P+  T +AVL
Sbjct: 247 GCIASARKVFDDVVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTAVL 306

Query: 183 RACDSLIILRQLHCGIIKVGFE--SDVFVR----------SALIDIYAKLGELRNAECVF 230
            AC +         G+I+ GF   SDV  R            L+D+ A+ G L+ AE   
Sbjct: 307 TACRN--------AGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFV 358

Query: 231 NEMPTR-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS---TLTSVLRACTG 285
           N MP   D V+W ++I     + D D A  L K ++     AD S    L S + A TG
Sbjct: 359 NAMPIEPDTVLWRTLIWACKVHGDADRAERLMKHLEIQDMRADDSGSYILASNVYASTG 417


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/528 (40%), Positives = 318/528 (60%), Gaps = 9/528 (1%)

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV--RPNMFTYSAVL 182
           L  A ++ + +  +N     TMI AY       +AL L + ML +    RP+ FTY  +L
Sbjct: 44  LTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLL 103

Query: 183 RACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239
           ++C  L    + +QLH  I K G ESD +V + LI +Y+  G+   A  VF +M  RD+V
Sbjct: 104 KSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVV 163

Query: 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--V 297
            W S+I GF  +    EA+ L++ M   G   +++T+ SVLRAC     + +G +V   +
Sbjct: 164 SWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVI 223

Query: 298 HVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
              K   +  +  AL+DMY KCGS+  A  VF  ++ KDV +W+ MISGLA +G  +EA+
Sbjct: 224 EERKIGLEANVRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAV 283

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
            LF+ M+   ++P+  T+  VL AC +AG+  +G+ +F SM   YGI P  +HY CM+DL
Sbjct: 284 TLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDL 343

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA--ICAAKKILNLDPQDPG 475
           L R G L EA + I +MP EPD V WR L+ A KVH + D +  +   + +L +D  D G
Sbjct: 344 LARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCG 403

Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
           +Y+LL N+YA++ KW + A++R+ M  +G++K PGCS IEV+  +H F   DS H + +K
Sbjct: 404 SYVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGLVHEFAAGDSGHIEAEK 463

Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
           I   L  + ++L   GY P  + VL +++ ++K   +++HSEKLA+ FGL+  + G  IR
Sbjct: 464 IYAKLDEVEERLKAEGYHPKLSEVLLEIDNKEKAFQLRHHSEKLAVAFGLIKTSPGTEIR 523

Query: 596 IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           I KNLR C DCH+  KL +K+  Q I++RD IR+HHF +G+CSC DYW
Sbjct: 524 IVKNLRSCEDCHSVLKLISKIYQQDIIVRDRIRFHHFINGDCSCKDYW 571



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 175/362 (48%), Gaps = 31/362 (8%)

Query: 9   LKWTKPSSQARQ----FSLTITPPVASC-------NTITRNSSSLLDDFTRFCYQRDLPR 57
           LK   P  Q R     F+     P           N+++  +S   +   R   Q   P 
Sbjct: 17  LKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFFHNTMIRAYSQ--TPD 74

Query: 58  AMKAMH---AMQCHGV--RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
             +A+H   +M C     R D  TY  L+K C         K +H  +   G E + ++ 
Sbjct: 75  PTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVS 134

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N L++M+        A  +F +M +R+VVSWT+MI  + D     +A+ L   M+ +GV 
Sbjct: 135 NGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVE 194

Query: 173 PNMFTYSAVLRAC---DSLIILRQLHCGII---KVGFESDVFVRSALIDIYAKLGELRNA 226
           PN  T  +VLRAC    ++ + R++  G+I   K+G E++  VR+ALID+YAK G + +A
Sbjct: 195 PNEATVVSVLRACADAGAVGMGRRVQ-GVIEERKIGLEAN--VRTALIDMYAKCGSIGSA 251

Query: 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL 286
             VF+ +  +D+  W ++I G A +   +EA+ L+ +M+  G   D+ T+T+VL AC   
Sbjct: 252 RKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRNA 311

Query: 287 ALLELG-TQVHVHVLKYDHDLILNN--ALLDMYCKCGSLEDAMSVFSRM-IQKDVISWST 342
                G    +    KY     + +   ++D+  + G L++A     +M I+ DV+ W T
Sbjct: 312 GWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRT 371

Query: 343 MI 344
           +I
Sbjct: 372 LI 373


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/565 (37%), Positives = 342/565 (60%), Gaps = 12/565 (2%)

Query: 89  AVEEAKLVHNHVLSGG-FE-PETFLVNILLNMH-VKFSLLEEAQVLFDQMPERNVVSWTT 145
           ++   K +H H+ + G F  P +   + LL ++ +    L  A + F Q+   +   W  
Sbjct: 16  SLPHTKQLHAHLFTTGQFRLPISPARSKLLELYALSLGNLSFAILTFSQIRTPSTNDWNA 75

Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR----QLHCGIIKV 201
           +I  +  +     A      M+ +  + +  T S VL+AC + ++ R    Q+H  I++ 
Sbjct: 76  IIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKAC-ARVLARLESIQIHTHIVRK 134

Query: 202 GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLY 261
           GF +D  + + L+D+YAK+GE+ +AE VF+EM  RD+  WN++I GFAQ S   EAL+L+
Sbjct: 135 GFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLF 194

Query: 262 KRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKC 319
           KRM+  GF  ++ ++   L AC  L   + G ++H  + V ++D +  + N ++DMY KC
Sbjct: 195 KRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMYAKC 254

Query: 320 GSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378
           G ++ A  VF  M  +KD+++W+TMI   A +G   +AL+LFE M  S + P+ ++ + V
Sbjct: 255 GFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAV 314

Query: 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP 438
           L AC+H G VE+G+  F SM+   G+ P  +HY  ++DLLGRAG+L EA  +++ MP  P
Sbjct: 315 LCACNHGGLVEEGFRLFNSMEN-CGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVP 373

Query: 439 DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRK 498
           D V W+ LLGA + HRN ++A   ++K++ +     G ++LLSN+YA  ++W +V  VR+
Sbjct: 374 DIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAARERWADVGRVRE 433

Query: 499 TMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNY 558
            M+ R + K PG S+IE N  IH F  AD SH    +I   L  +  ++   GY  +T++
Sbjct: 434 AMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIRFRVKEYGYVAETSF 493

Query: 559 VLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMEN 618
           VL D+  E KE+ + +HSEKLA+ FGL+S ++G  I++ KNLRICGDCH   KL +K+ +
Sbjct: 494 VLHDIGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRICGDCHFVIKLISKIYD 553

Query: 619 QTIVIRDPIRYHHFQDGNCSCGDYW 643
           + I++RD +R+H F++G CSC DYW
Sbjct: 554 REIIVRDRVRFHRFKEGFCSCRDYW 578



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 161/334 (48%), Gaps = 19/334 (5%)

Query: 21  FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAEL 80
           FS   TP     N I R           F    +   A     +M     + D++T + +
Sbjct: 62  FSQIRTPSTNDWNAIIRG----------FIQSPNPTNAFAWYKSMISKSRKVDALTCSFV 111

Query: 81  IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNV 140
           +K C    A  E+  +H H++  GF  +  L   LL+++ K   ++ A+ +FD+M +R++
Sbjct: 112 LKACARVLARLESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDI 171

Query: 141 VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCG 197
            SW  +IS +       +AL L   M  +G +PN  +    L AC  L   ++   +H G
Sbjct: 172 ASWNALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIH-G 230

Query: 198 IIKVG-FESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVD 255
            IKV  F+ +  V + +ID+YAK G +  A  VF  M  R D+V WN++I  FA + +  
Sbjct: 231 YIKVERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGC 290

Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV--HVHVLKYDHDLILNNALL 313
           +AL L+++M ++G + D  +  +VL AC    L+E G ++   +       ++    +++
Sbjct: 291 KALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVV 350

Query: 314 DMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISG 346
           D+  + G L +A  + + M    D++ W T++  
Sbjct: 351 DLLGRAGRLHEAYDIVNSMPTVPDIVLWQTLLGA 384


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/586 (37%), Positives = 335/586 (57%), Gaps = 38/586 (6%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           +H  +L  G          L++ + K  LL +A  LFD+ P R++  ++++++A   +  
Sbjct: 25  MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSAS 84

Query: 156 NDKALELLIFMLR-EGVRPNMFTYSAVLRACDSLI---ILRQLHCGIIKVGFESDVFVRS 211
            + AL +L  ML  + + P+ F  S+V      L    + RQLH   +   +  D  V+S
Sbjct: 85  PELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKS 144

Query: 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK--------- 262
           +L+D+Y K G   +   VF+ M  ++ VVW +++ G+A N   +EAL L++         
Sbjct: 145 SLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFA 204

Query: 263 ----------------------RMKRAGFAADQS-TLTSVLRACTGLALLELGTQVHVHV 299
                                  M+R G   D +  L+ V+     LA   LG Q+H   
Sbjct: 205 WTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGST 264

Query: 300 LK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357
           ++  +  ++I+ NAL+DMY KC  +  A  VF  +  +DVISW+TM+ G AQ+G ++EAL
Sbjct: 265 MRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEAL 324

Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
            L++ M ++  KPN +T VG+++ACSHAG V+ G   F+SMK  YGI P  +HY+C +DL
Sbjct: 325 ALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDL 384

Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
           L R+G L EA +L+  MPYEPD  TW ALL AC  +++ ++ I  + K+L L P+D  TY
Sbjct: 385 LSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTY 444

Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
           ILLSN+YA + KWD VA+VRK M    I KEPG SWIE  ++   F+  +      ++I 
Sbjct: 445 ILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIM 504

Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
             L+ ++ ++   GY PDT+ V+ DLE  +KE  +  HSE+LA+ FGL+    G  IR+ 
Sbjct: 505 VFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVV 564

Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           KNLR+C DCHT  KL +++ ++ IV+RD  R+HHF+ G CSC ++W
Sbjct: 565 KNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 610



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 107/202 (52%), Gaps = 3/202 (1%)

Query: 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
           +R +H  I+K G        +AL+  YAK   L +A  +F+E P RD+ +++S++   + 
Sbjct: 22  VRGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSH 81

Query: 251 NSDVDEALNLYKRMKRA-GFAADQSTLTSVLRACTGLALLELGTQVHVH--VLKYDHDLI 307
           ++  + AL + + M  A     D   ++SV      L    LG Q+H H  V  Y+ D +
Sbjct: 82  SASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDV 141

Query: 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
           + ++L+DMYCKCGS +D   VF  M  K+ + W+ ++SG A NG S+EAL+LF SM    
Sbjct: 142 VKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRN 201

Query: 368 IKPNYITIVGVLFACSHAGFVE 389
           +      I G++      G VE
Sbjct: 202 LFAWTALISGLVNTGESVGAVE 223



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 21/185 (11%)

Query: 93  AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD 152
            + +H   +  GF     + N L++M+ K S +  A+ +F+ +  R+V+SWTTM+     
Sbjct: 257 GRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQ 316

Query: 153 AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVG---FES---- 205
               ++AL L   M+  G +PN  T+  ++ AC         H G+++ G   FES    
Sbjct: 317 HGRAEEALALYDRMVLAGAKPNEVTFVGLIYACS--------HAGLVQKGRQLFESMKNE 368

Query: 206 -DVFVR----SALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQNSDVDEALN 259
             +  R    +  +D+ ++ G L  AE +   MP   D   W +++    +  D +  + 
Sbjct: 369 YGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIR 428

Query: 260 LYKRM 264
           +  ++
Sbjct: 429 ISDKL 433


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/589 (37%), Positives = 349/589 (59%), Gaps = 10/589 (1%)

Query: 40  SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNH 99
           +SL+   TRF  +R   +A+   + M+  GV  +  T++ ++  C    A    + +H+ 
Sbjct: 99  TSLITQLTRF--KRPF-KALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASVHGEQMHSL 155

Query: 100 VLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159
           V   GF  E F+V+ L++M+ K   +  A+ +F++MP RN+VSW TMI  +   K+ D+A
Sbjct: 156 VWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQA 215

Query: 160 LELLIFMLREGVRP-NMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALID 215
           +     +L E +   +  ++S+V  AC    +L   +Q+H   +K+G  + V++ ++L D
Sbjct: 216 IFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSD 275

Query: 216 IYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275
           +Y K G   +   +F+    RD+V WN +I  +  N + ++A N +  M+R G   D+++
Sbjct: 276 MYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEAS 335

Query: 276 LTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333
            +SVL +C  LA L  GT +H  +++  +  +L + ++L+ MY KCGSL DA  +F    
Sbjct: 336 YSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETE 395

Query: 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393
            ++V+ W+ +I+   Q+G++   ++LFE M    IKP+YIT V VL ACSH G VE+G+ 
Sbjct: 396 DRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFF 455

Query: 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           +F SM K +GI PG EHY+C++DLL RAG+L  A + I  MP +PDA  W ALL AC+ H
Sbjct: 456 YFNSMIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIELMPIKPDASVWGALLSACRNH 515

Query: 454 RNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSW 513
            N  +    A K+ +L+P +PG Y+LL NI   +   +E  EVR+ M + G+ KEPGCSW
Sbjct: 516 SNLIMGKEVALKLFDLEPDNPGNYVLLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSW 575

Query: 514 IEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQ 573
           I++    + F V D SH +  +I + L+ L + +   GY  +T + +   E E KE S+ 
Sbjct: 576 IDIKNSTYVFTVHDKSHEKTKEIYEMLEKLKELVKKKGYVAETEFAINTAE-EYKEQSLW 634

Query: 574 YHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIV 622
           YHSEK+A+ FGL+SL  G  IRI+KNLR CGDCHT  K  +++  + I+
Sbjct: 635 YHSEKIALAFGLLSLPAGAPIRIKKNLRTCGDCHTVMKFASEIFAREII 683



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/398 (32%), Positives = 208/398 (52%), Gaps = 17/398 (4%)

Query: 80  LIKCC-LARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE- 137
           L+ C   ++HA +    +H+ +++       FL N LLN++ K   +++  +LF   P+ 
Sbjct: 36  LLNCSRTSKHATQ----IHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFSSAPDD 91

Query: 138 -RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQ 193
            +NVVSWT++I+     K   KAL     M R GV PN +T+SAVL AC      +   Q
Sbjct: 92  SKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASVHGEQ 151

Query: 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253
           +H  + K GF ++VFV SAL+D+YAK  ++  AE VF EMP R+LV WN++I GF QN  
Sbjct: 152 MHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNKL 211

Query: 254 VDEALNLYKRMKRAGFAA-DQSTLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNN 310
            D+A+  +K +      A D+ + +SV  AC     LE G QVH   LK    + + +NN
Sbjct: 212 YDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINN 271

Query: 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370
           +L DMY KCG   D   +FS    +DV++W+ MI     N   ++A   F  M+     P
Sbjct: 272 SLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIP 331

Query: 371 NYITIVGVLFACSH-AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429
           +  +   VL +C++ A   +    H + ++   G        S +I +  + G L +A +
Sbjct: 332 DEASYSSVLHSCANLAALYQGTLIHNQIIRS--GFVKNLRVASSLITMYAKCGSLVDAFQ 389

Query: 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467
           +  E   + + V W A++ AC+ H + +  +   +++L
Sbjct: 390 IFEETE-DRNVVCWTAIIAACQQHGHANWVVELFEQML 426


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/537 (38%), Positives = 325/537 (60%), Gaps = 8/537 (1%)

Query: 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
           N +++ +++F  +++A  LF QMP +NV+SWTTMI      + + +AL L   MLR  ++
Sbjct: 163 NAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIK 222

Query: 173 PNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
               T++ V+ AC    +  +  Q+H  IIK GF  + +V ++LI +YA      ++  V
Sbjct: 223 STSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKV 282

Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
           F EM    + VW +++ G++ N   ++ALN++  M R     +QST  S L +C+ L  L
Sbjct: 283 FGEMVHEKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTL 342

Query: 290 ELGTQVHVHVLKYDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347
           + G ++H   +K     +  + N+L+ MY   G++ DA+SVF  + +K ++SW+++I G 
Sbjct: 343 DWGKEIHGVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGC 402

Query: 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK-FYGIDP 406
           AQ+G  + A  +F  M     +P+ IT  G+L ACSH GF++ G   F  +      ID 
Sbjct: 403 AQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLQKGRKLFYYISSGLNHIDR 462

Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466
             +HY+CM+D+LGR G+L+EA KLI  M  +P+ + W ALL AC++H + D    AA  I
Sbjct: 463 KIQHYTCMVDILGRCGELKEAEKLIESMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAI 522

Query: 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVA 526
            NLD +    Y+LLSNIYA++ +W  V+++R  M+ +GI K+PG SW+ +  + H F   
Sbjct: 523 FNLDSKSSAAYVLLSNIYASAGRWSSVSKLRVKMKQKGIMKKPGSSWVVIRGKKHEFFSG 582

Query: 527 DSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLM 586
           D   P   +I + L+ L +KL  +GY PD    L D+E EQKE+ + YHSE+LAI FGL+
Sbjct: 583 D--RPHCLRIFEKLEFLREKLKELGYVPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLI 640

Query: 587 SLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           +  +G T+ + KNLR+C DCHT  KL +++    IV+RDP R+HHF++G CSCGDYW
Sbjct: 641 NTVEGSTVTVMKNLRVCEDCHTVIKLISRVVGCKIVLRDPTRFHHFKNGMCSCGDYW 697



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 212/434 (48%), Gaps = 18/434 (4%)

Query: 46  FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYA----ELIKCC-LARHAVEEAKLVHNHV 100
           ++R  +QR   RA    H +     R+ SVT      E++ C  L    ++EA+ V + V
Sbjct: 2   WSRAIFQRFRFRAFSMSHVIHGKSFRSYSVTVEFQNREVLICNHLLNRRLDEAREVFDQV 61

Query: 101 LSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKAL 160
            S    P   L   +++ + + + L +A  LFD+MP R+VVSW +MIS   +    D A+
Sbjct: 62  PS----PHVSLYTKMISGYTRSNRLVDALNLFDEMPLRDVVSWNSMISGCVECGDIDTAV 117

Query: 161 ELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKL 220
           +    M  E    ++ +++A++  C    ++ Q      ++  + D+   +A++  Y + 
Sbjct: 118 K----MFDEMPERSVVSWTAMVNGCFRFGMVDQAERLFCQMPVK-DIAAWNAMVHGYLQF 172

Query: 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280
           G++ +A  +F +MP ++++ W ++I G  QN    EALNL+K M R    +   T T V+
Sbjct: 173 GKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIKSTSRTFTCVI 232

Query: 281 RACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI 338
            AC       +GTQVH  ++K  + ++  +  +L+ +Y  C   ED+  VF  M+ + V 
Sbjct: 233 TACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVHEKVA 292

Query: 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398
            W+ ++SG + N   ++AL +F  M  + I PN  T    L +CS  G ++ G      +
Sbjct: 293 VWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWG-KEIHGV 351

Query: 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458
               G+       + ++ +   +G + +AV +  E+ ++   V+W +++  C  H     
Sbjct: 352 AVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEI-FKKSIVSWNSIIVGCAQHGRGKW 410

Query: 459 AICAAKKILNLDPQ 472
           A     +++ L+ +
Sbjct: 411 AFVIFGQMIRLNKE 424


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/557 (38%), Positives = 342/557 (61%), Gaps = 11/557 (1%)

Query: 96  VHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
           VH H++  G+     L+  LLN+      +   + +F  +P  +   +T++I +   +K 
Sbjct: 31  VHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKS--TSKS 88

Query: 156 NDKALELLIF---MLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFV 209
           ++ ++  L F   M+   V P+ +T+++V+++C  L  L   R +H  ++  GF  DV+V
Sbjct: 89  HNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYV 148

Query: 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
           ++AL+ +Y K G+L NA  VF+++  R +V WNS+I G+ QN    EA+ L+ RMK  G 
Sbjct: 149 QAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGV 208

Query: 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMS 327
             D +T  SVL AC  L    LG  VH +++    D +++L  +L++MY +CG++  A  
Sbjct: 209 EPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKARE 268

Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
           VF  M +++V++W+ MISG   NGY  +A++LF  M+ + + PN IT V VL AC+HAG 
Sbjct: 269 VFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGL 328

Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI-HEMPYEPDAVTWRAL 446
           V +G   F S+++ Y + PG EH  C++D+LGRAG L EA   I  E+P  P      A+
Sbjct: 329 VNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAILTAM 388

Query: 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506
           LGACK+H+N DL    A+ +L  +P++P  Y++LSNIYA + + D+V  VR  M  + + 
Sbjct: 389 LGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIRKCLK 448

Query: 507 KEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGE 566
           K+ G S +EV+++ + F++ D SH + + I  +L  L+ K    GY P ++ V+ +LE E
Sbjct: 449 KQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVPVSDSVMHELEEE 508

Query: 567 QKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626
           ++E +++YHSEKLAI FGL+  + G  IRI KNLR+C DCH+  K  + + ++ I++RD 
Sbjct: 509 EREYALRYHSEKLAIAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFISAISSREIIVRDK 568

Query: 627 IRYHHFQDGNCSCGDYW 643
           +R+HHF+ G+CSC DYW
Sbjct: 569 LRFHHFKVGSCSCLDYW 585



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 158/327 (48%), Gaps = 14/327 (4%)

Query: 16  SQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSV 75
           S  RQ  L +  P +   T    S+S   +F+ +        ++     M    V   + 
Sbjct: 61  SYTRQIFLAVPNPDSFLFTSLIKSTSKSHNFSIY--------SLYFYSRMVLSNVSPSNY 112

Query: 76  TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135
           T+  +IK C    A++  ++VH HVL  GF  + ++   L+ ++ K   L  A+ +FD++
Sbjct: 113 TFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKI 172

Query: 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR--- 192
            ER++V+W +MIS Y       +A+ L   M   GV P+  T+ +VL AC  L       
Sbjct: 173 RERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGC 232

Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252
            +H  I+  G + +V + ++LI++Y + G +  A  VF+ M  R++V W ++I G+  N 
Sbjct: 233 WVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNG 292

Query: 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH---DLILN 309
              +A+ L+  M+R G   +  T  +VL AC    L+  G ++   + +  H    +  N
Sbjct: 293 YGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHN 352

Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKD 336
             L+DM  + G L++A +     I ++
Sbjct: 353 VCLVDMLGRAGLLDEAYNFIKEEIPEN 379



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 145/335 (43%), Gaps = 53/335 (15%)

Query: 65  MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
           M+  GV  DS T+  ++  C    A      VH +++  G +    L   L+NM+++   
Sbjct: 203 MKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGN 262

Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
           + +A+ +FD M ERNVV+WT MIS Y       +A+EL   M R G+ PN  T+ AVL A
Sbjct: 263 VSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSA 322

Query: 185 CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSI 244
           C         H G++  G      +R    + Y  +  + +  C+ + +    L      
Sbjct: 323 CA--------HAGLVNEGRRLFASIR----EEYHLVPGVEHNVCLVDMLGRAGL------ 364

Query: 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD- 303
                    +DEA N  K       A   + LT++L AC      +LG QV  H+L  + 
Sbjct: 365 ---------LDEAYNFIKEEIPENPAP--AILTAMLGACKMHKNFDLGAQVAEHLLAAEP 413

Query: 304 ----HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS----QE 355
               H +IL+N    +Y   G ++    V + MI+K +           Q GYS     +
Sbjct: 414 ENPAHYVILSN----IYALAGRMDQVEIVRNNMIRKCLKK---------QVGYSTVEVDQ 460

Query: 356 ALKLFESMKVSRIKPN--YITIVGVLFACSHAGFV 388
              LF     S  + N  Y  +  +++ CS AG+V
Sbjct: 461 KTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYV 495


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/601 (35%), Positives = 346/601 (57%), Gaps = 15/601 (2%)

Query: 51  YQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF 110
           YQ     ++    +M   G   D+ ++  ++K C +       + +H HV  GG E E F
Sbjct: 30  YQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPF 89

Query: 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVS--WTTMISAY-CDAKMNDKALELLIFML 167
           ++  L++M+ K  L+ +A+ +F++ P+ + +S  +  +IS Y  ++K+ D A  +   M 
Sbjct: 90  VLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAY-MFRRMK 148

Query: 168 REGVRPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELR 224
             GV  +  T   ++  C   + L + R LH   +K G +S+V V ++ I +Y K G + 
Sbjct: 149 ETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVE 208

Query: 225 NAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT 284
               +F+EMP + L+ WN++I G++QN    + L LY++MK +G   D  TL SVL +C 
Sbjct: 209 AGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCA 268

Query: 285 GLALLELGTQVH--VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342
            L   ++G +V   V    +  ++ ++NA + MY +CG+L  A +VF  M  K ++SW+ 
Sbjct: 269 HLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTA 328

Query: 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402
           MI     +G  +  L LF+ M    I+P+    V VL ACSH+G  + G   F++MK+ Y
Sbjct: 329 MIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREY 388

Query: 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICA 462
            ++PG EHYSC++DLLGRAG+L EA++ I  MP EPD   W ALLGACK+H+N D+A  A
Sbjct: 389 KLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELA 448

Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHA 522
             K++  +P + G Y+L+SNIY++S+  + +  +R  MR R   K+PG S++E   ++H 
Sbjct: 449 FAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHL 508

Query: 523 FNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIV 582
           F   D SH Q +++++ L  L   ++ +    D +       GE+   + + HSE+LAI 
Sbjct: 509 FLAGDRSHEQTEEVHRMLDELETSVMELAGNMDCD------RGEEVSSTTREHSERLAIA 562

Query: 583 FGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDY 642
           FG+++   G  I + KNLR+C DCH F K  +K+ ++  V+RD  R+H+F+DG CSC DY
Sbjct: 563 FGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDY 622

Query: 643 W 643
           W
Sbjct: 623 W 623



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 199/377 (52%), Gaps = 13/377 (3%)

Query: 143 WTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL---IILRQLHCGII 199
           W   +       +  +++ L   MLR G  P+ F++  +L++C SL   +  +QLHC + 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP--TRDLVVWNSIIGGFAQNSDVDEA 257
           K G E++ FV +ALI +Y K G + +A  VF E P  ++  V +N++I G+  NS V +A
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 258 LNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDM 315
             +++RMK  G + D  T+  ++  CT    L LG  +H   +K   D ++ + N+ + M
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITM 200

Query: 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITI 375
           Y KCGS+E    +F  M  K +I+W+ +ISG +QNG + + L+L+E MK S + P+  T+
Sbjct: 201 YMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTL 260

Query: 376 VGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435
           V VL +C+H G  + G +    + +  G  P     +  I +  R G L +A  +   MP
Sbjct: 261 VSVLSSCAHLGAKKIG-HEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMP 319

Query: 436 YEPDAVTWRALLGACKVHRNTDLAICAAKKIL--NLDPQDPGTYILLSNIYANSQKWDEV 493
            +   V+W A++G   +H   ++ +     ++   + P D   ++++ +  ++S   D+ 
Sbjct: 320 VK-SLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRP-DGAVFVMVLSACSHSGLTDKG 377

Query: 494 AEVRKTMRARGITKEPG 510
            E+ + M+ R    EPG
Sbjct: 378 LELFRAMK-REYKLEPG 393


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/551 (41%), Positives = 337/551 (61%), Gaps = 21/551 (3%)

Query: 112 VNILLNMHVKFSLLEE--AQVLFDQMPERNVVSWTTMISAYCDAKMN-DKALELLIFMLR 168
           +N LLN     S +++  AQ+L   +   N  +W  +I +Y  + ++  KA+ L   ++ 
Sbjct: 17  INHLLNQSNSISHVKQIHAQIL-RTIHTPNSFTWNILIQSYSKSTLHKQKAILLYKAIIT 75

Query: 169 EG---VRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
           E    + P+  TY  VL+AC  L  L   +Q+H  ++K+GFE D ++ ++LI  YA  G 
Sbjct: 76  EQENELFPDKHTYPFVLKACAYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGY 135

Query: 223 LRNAECVFNEM-PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
           L  A  VF+ M   R++V WN +I  +A+  D D  L ++  M +  +  D  T+ SV+R
Sbjct: 136 LETARKVFDRMCEWRNVVSWNVMIDSYAKVGDYDIVLIMFCEMMKV-YEPDCYTMQSVIR 194

Query: 282 ACTGLALLELGTQVHVHVLKYDH-----DLILNNALLDMYCKCGSLEDAMSVFSRMIQKD 336
           AC GL  L LG  VH  VLK        D+++N  L+DMYCKCGSLE A  VF  M  +D
Sbjct: 195 ACGGLGSLSLGMWVHAFVLKKCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRD 254

Query: 337 VISWSTMISGLAQNGYSQEALKLFESM-KVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395
           V SW+++I G A +G ++ AL  F  M KV +I PN IT VGVL AC+H+G V++G  +F
Sbjct: 255 VSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGLMYF 314

Query: 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC-KVHR 454
           + M K Y ++P   HY C++DL  RAG +QEA+ ++ EMP +PDAV WR+LL AC K H 
Sbjct: 315 EMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIWRSLLDACYKQHA 374

Query: 455 NTDLAICAAKKILNLDPQD-PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSW 513
           + +L+   AK+I   +     G Y+LLS +YA++ +W++V  +RK M  +G++K+PGCS 
Sbjct: 375 SVELSEEMAKQIFESNGSVCGGAYVLLSKVYASASRWNDVGLLRKLMNDKGVSKKPGCSL 434

Query: 514 IEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPD-TNYVLQDLEGEQKEDSI 572
           IE+N   H F   D++HPQ   I K +  + +KL  VGY PD +   L D   E K++++
Sbjct: 435 IEINGAAHEFFAGDTNHPQSKDIYKFMNEIQEKLESVGYLPDYSGAPLIDEINEGKQNTM 494

Query: 573 QYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF 632
           + HSE+LAI FGL++      IR+ KNLR+C DCH   KL +++ N  I++RD +R+HHF
Sbjct: 495 RLHSERLAIAFGLLNSKPSMPIRVFKNLRVCNDCHKVTKLISRIYNVEIIVRDRVRFHHF 554

Query: 633 QDGNCSCGDYW 643
           +DG+CSC DYW
Sbjct: 555 KDGSCSCMDYW 565



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 185/370 (50%), Gaps = 31/370 (8%)

Query: 16  SQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAM-KAMHAMQCHGVRADS 74
           S  +Q    I   + + N+ T N   L+  +++    +     + KA+   Q + +  D 
Sbjct: 28  SHVKQIHAQILRTIHTPNSFTWNI--LIQSYSKSTLHKQKAILLYKAIITEQENELFPDK 85

Query: 75  VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ 134
            TY  ++K C    ++ E K VH HVL  GFE +T++ N L++ +     LE A+ +FD+
Sbjct: 86  HTYPFVLKACAYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDR 145

Query: 135 MPE-RNVVSWTTMISAYCDAKMNDKALELLIFM-LREGVRPNMFTYSAVLRAC---DSLI 189
           M E RNVVSW  MI +Y  AK+ D  + L++F  + +   P+ +T  +V+RAC    SL 
Sbjct: 146 MCEWRNVVSWNVMIDSY--AKVGDYDIVLIMFCEMMKVYEPDCYTMQSVIRACGGLGSLS 203

Query: 190 ILRQLHCGIIK---VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIG 246
           +   +H  ++K        DV V + L+D+Y K G L  A+ VF  M  RD+  WNSII 
Sbjct: 204 LGMWVHAFVLKKCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIIL 263

Query: 247 GFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACT-------GLALLELGTQVHVH 298
           GFA +     AL+ + RM K      +  T   VL AC        GL   E+ T+ +  
Sbjct: 264 GFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKEY-- 321

Query: 299 VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-IQKDVISWSTMISGLAQNGYSQE-- 355
               +  L+    L+D+Y + G +++A++V S M I+ D + W +++    +   S E  
Sbjct: 322 --NVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIWRSLLDACYKQHASVELS 379

Query: 356 ---ALKLFES 362
              A ++FES
Sbjct: 380 EEMAKQIFES 389


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/587 (36%), Positives = 334/587 (56%), Gaps = 36/587 (6%)

Query: 66  QCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL 125
           + HG      T+   I    A + + +   +H  +        + +V  L++       L
Sbjct: 31  RAHGPSRSPETH--FIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSL 88

Query: 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
           + A  +F      N+  +  +I    +    + ++   + MLR  +RP+  T   VL++ 
Sbjct: 89  DYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSV 148

Query: 186 DSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD----L 238
            +L+   + R LH G++K+G E D FVR +L+D+Y K+GEL     +F+E P R+    +
Sbjct: 149 AALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESI 208

Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
           ++WN                         G   +  T+ S L ACT +  L++G ++H +
Sbjct: 209 LLWN-------------------------GVRPNDLTVVSALLACTKIGALQVGERIHNY 243

Query: 299 VLKYDHDLI--LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEA 356
           +      L   +  AL+DMY KCG+++ A  VF     KD+++WS MI G A +G   +A
Sbjct: 244 LSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQA 303

Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416
           L+ F  MK + I P+ +  + +L ACSH+G V+ G N F+SM+  Y I+P  +HY+ ++D
Sbjct: 304 LQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVD 363

Query: 417 LLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476
           LLGRAG+L EA+  I  MP  PD V W AL  AC+ H+N ++A   A+K+L L+P+ PG+
Sbjct: 364 LLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGS 423

Query: 477 YILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKI 536
           Y+ LSN+YA   +W++V  VR  M+ RG+ K+PG S+IEV  Q+H+F   D +H + ++I
Sbjct: 424 YVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEI 483

Query: 537 NKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRI 596
           +  L+ +       GY P+T +VL ++E E+KED++  HSEKLA+ FGL+S   G TIRI
Sbjct: 484 SLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRI 543

Query: 597 RKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
            KNLR+CGDCH+  K  +K+  + I++RD  R+HHF+DG CSCGDYW
Sbjct: 544 VKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 590



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 93/203 (45%), Gaps = 21/203 (10%)

Query: 56  PRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNIL 115
           P+  KA   +  +GVR + +T    +  C    A++  + +HN++ S GF+    +   L
Sbjct: 200 PQRNKAESILLWNGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTAL 259

Query: 116 LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM 175
           ++M+ K   ++ A  +F +   +++++W+ MI  +      D+AL+  + M   G+ P+ 
Sbjct: 260 VDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDE 319

Query: 176 FTYSAVLRACDSLIILRQLHCGIIKVG---FES---DVFVR------SALIDIYAKLGEL 223
             + A+L AC         H G +  G   FES   D  +       + ++D+  + G L
Sbjct: 320 VIFLAILTACS--------HSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRL 371

Query: 224 RNAECVFNEMPTR-DLVVWNSII 245
             A      MP   D V+W ++ 
Sbjct: 372 DEALSFIQSMPINPDFVIWGALF 394


>gi|409032180|gb|AFV08644.1| EMP5 [Zea mays]
 gi|409032182|gb|AFV08645.1| EMP5 [Zea mays]
 gi|414878626|tpg|DAA55757.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 776

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/594 (34%), Positives = 339/594 (57%), Gaps = 32/594 (5%)

Query: 68  HGVRADSVTYAELIKCCLARHAVEE---------AKLVHNHVLSGGFEPETFLVNILLNM 118
           HG+  +S     +IKCC +  +            A+ VH  V+  G + + FL + +++M
Sbjct: 197 HGLGWNSFALGSIIKCCASSSSYAAAGDVGGGRIAEAVHGCVVKAGLDADLFLASAMIDM 256

Query: 119 HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND---KALELLIFMLREGVRPNM 175
           + K   L  A  LF  +P+ NV+    MI+ +C  +  D   +AL L   +   G++P+ 
Sbjct: 257 YAKRGALTNAVALFKSVPDPNVIVLNAMIAGFCREEAADVAREALGLYSELQSRGMQPSE 316

Query: 176 FTYSAVLRACD---SLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
           F++S++LRAC+        +Q+H  ++K  F+ DV++ SALID+Y+  G + +    F  
Sbjct: 317 FSFSSILRACNLAGEFGFGKQIHGQVLKHSFQGDVYIGSALIDLYSGSGCMEDGYRCFRS 376

Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
           +P +D+V+W S+I G  QN   +EAL L++   R G   D   ++SV+ AC  LA+   G
Sbjct: 377 LPKQDVVIWTSVISGCVQNELFEEALRLFQESVRCGLRPDVFAMSSVMNACASLAVARTG 436

Query: 293 TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
            Q+    +K  ++    + N+ + M  + G ++ A   F  M  +DV+SWS +IS  A +
Sbjct: 437 EQIQCLAVKSGFNRFTAMGNSFIHMCARSGDVDAATRRFQEMESRDVVSWSAVISSHAHH 496

Query: 351 GYSQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
           G +++AL +F  M  +++ P N IT + +L ACSH G V++G  ++  M   YG+ P  +
Sbjct: 497 GCARDALCVFNEMLDAKVAPPNEITFLSILTACSHGGLVDEGLRYYGIMNDEYGLSPTIK 556

Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
           H +C++DLLGRAG+L +A   I +  +  DAV WR+LL +C++H + +     A KI++L
Sbjct: 557 HCTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIHGDMERGQLVADKIMDL 616

Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
           +P    +Y++L N+Y ++ +    ++ R  M+ RG+ KEPG SWIE++  +H+F   D S
Sbjct: 617 EPTSSASYVILYNMYLDAGELSSASKTRDLMKERGVKKEPGLSWIELSSGVHSFVAGDKS 676

Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
           HP+   I + +  ++ K+ G+          QDL G         HSEKLA+ FG++ L 
Sbjct: 677 HPESKAIYRKVAEMVSKVAGISSRE------QDLAG--------CHSEKLAVAFGMIHLP 722

Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
           Q   IR+ KNLR+C DCH+  +L +K E + I++RD IR+H F+DG+CSCG YW
Sbjct: 723 QSAPIRVMKNLRVCRDCHSTMELISKSERREIILRDAIRFHRFRDGSCSCGGYW 776



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 129/444 (29%), Positives = 213/444 (47%), Gaps = 41/444 (9%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
           D  TYA  +  C     V   K VH  V+ GG     FL N + +M+ +   + EA+ +F
Sbjct: 101 DRFTYAAALAACSRALDVRTGKAVHAMVVLGGLGNGLFLSNSVASMYARCGEMGEARRVF 160

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLI--- 189
           D   ER+ VSW  ++S Y  A   ++ LE+   M R G+  N F   ++++ C S     
Sbjct: 161 DAAEERDDVSWNALLSGYVRAGAREETLEVFSLMCRHGLGWNSFALGSIIKCCASSSSYA 220

Query: 190 ---------ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
                    I   +H  ++K G ++D+F+ SA+ID+YAK G L NA  +F  +P  +++V
Sbjct: 221 AAGDVGGGRIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIV 280

Query: 241 WNSIIGGFAQNSDVD---EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
            N++I GF +    D   EAL LY  ++  G    + + +S+LRAC        G Q+H 
Sbjct: 281 LNAMIAGFCREEAADVAREALGLYSELQSRGMQPSEFSFSSILRACNLAGEFGFGKQIHG 340

Query: 298 HVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
            VLK  +  D+ + +AL+D+Y   G +ED    F  + ++DV+ W+++ISG  QN   +E
Sbjct: 341 QVLKHSFQGDVYIGSALIDLYSGSGCMEDGYRCFRSLPKQDVVIWTSVISGCVQNELFEE 400

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGF-----------VEDGWNHFKSMKKFYGI 404
           AL+LF+      ++P+   +  V+ AC+               V+ G+N F +M   +  
Sbjct: 401 ALRLFQESVRCGLRPDVFAMSSVMNACASLAVARTGEQIQCLAVKSGFNRFTAMGNSF-- 458

Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAK 464
                     I +  R+G +  A +   EM    D V+W A++ +   H     A+C   
Sbjct: 459 ----------IHMCARSGDVDAATRRFQEMESR-DVVSWSAVISSHAHHGCARDALCVFN 507

Query: 465 KILNLDPQDPGTYILLSNIYANSQ 488
           ++L+     P     LS + A S 
Sbjct: 508 EMLDAKVAPPNEITFLSILTACSH 531



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 193/400 (48%), Gaps = 38/400 (9%)

Query: 77  YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLE--EAQVLFDQ 134
           Y  L++ C A   +     VH H+         FL N LL  + +  +     A  L D+
Sbjct: 5   YLHLLRSCAA---LPHVAAVHAHLARAHPNASLFLRNCLLASYCRLGVGAPLHAARLLDE 61

Query: 135 MPERNVVSWTTMISAYCDAKMNDKALELLIFM-LREGVR-PNMFTYSAVLRACDSLIILR 192
           MP RN VS+  +I AY  A +   AL L  F   R   R  + FTY+A L AC   + +R
Sbjct: 62  MPRRNAVSYNLVIVAYSRAGL--PALSLATFARARAWARVVDRFTYAAALAACSRALDVR 119

Query: 193 ---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
               +H  ++  G  + +F+ +++  +YA+ GE+  A  VF+    RD V WN+++ G+ 
Sbjct: 120 TGKAVHAMVVLGGLGNGLFLSNSVASMYARCGEMGEARRVFDAAEERDDVSWNALLSGYV 179

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL---------ELGTQVHVHVL 300
           +    +E L ++  M R G   +   L S+++ C   +            +   VH  V+
Sbjct: 180 RAGAREETLEVFSLMCRHGLGWNSFALGSIIKCCASSSSYAAAGDVGGGRIAEAVHGCVV 239

Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN---GYSQE 355
           K   D DL L +A++DMY K G+L +A+++F  +   +VI  + MI+G  +      ++E
Sbjct: 240 KAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVLNAMIAGFCREEAADVARE 299

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN---HFKSMKKFYGIDPGREHY- 411
           AL L+  ++   ++P+  +   +L AC+ AG  E G+    H + +K  +  D     Y 
Sbjct: 300 ALGLYSELQSRGMQPSEFSFSSILRACNLAG--EFGFGKQIHGQVLKHSFQGDV----YI 353

Query: 412 -SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450
            S +IDL   +G +++  +    +P + D V W +++  C
Sbjct: 354 GSALIDLYSGSGCMEDGYRCFRSLPKQ-DVVIWTSVISGC 392



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 161/315 (51%), Gaps = 13/315 (4%)

Query: 49  FCYQR--DLPRAMKAMHA-MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105
           FC +   D+ R    +++ +Q  G++    +++ +++ C         K +H  VL   F
Sbjct: 288 FCREEAADVAREALGLYSELQSRGMQPSEFSFSSILRACNLAGEFGFGKQIHGQVLKHSF 347

Query: 106 EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165
           + + ++ + L++++     +E+    F  +P+++VV WT++IS     ++ ++AL L   
Sbjct: 348 QGDVYIGSALIDLYSGSGCMEDGYRCFRSLPKQDVVIWTSVISGCVQNELFEEALRLFQE 407

Query: 166 MLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGE 222
            +R G+RP++F  S+V+ AC SL + R   Q+ C  +K GF     + ++ I + A+ G+
Sbjct: 408 SVRCGLRPDVFAMSSVMNACASLAVARTGEQIQCLAVKSGFNRFTAMGNSFIHMCARSGD 467

Query: 223 LRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA-ADQSTLTSVLR 281
           +  A   F EM +RD+V W+++I   A +    +AL ++  M  A  A  ++ T  S+L 
Sbjct: 468 VDAATRRFQEMESRDVVSWSAVISSHAHHGCARDALCVFNEMLDAKVAPPNEITFLSILT 527

Query: 282 ACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMS-VFSRMIQKD 336
           AC+   L++ G + +  ++  ++ L         ++D+  + G L DA + +       D
Sbjct: 528 ACSHGGLVDEGLR-YYGIMNDEYGLSPTIKHCTCVVDLLGRAGRLADAEAFIRDSAFHDD 586

Query: 337 VISWSTMISGLAQNG 351
            + W ++++    +G
Sbjct: 587 AVVWRSLLASCRIHG 601



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 138/289 (47%), Gaps = 18/289 (6%)

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLG--ELRNAECVFNEMPT 235
           Y  +LR+C +L  +  +H  + +    + +F+R+ L+  Y +LG     +A  + +EMP 
Sbjct: 5   YLHLLRSCAALPHVAAVHAHLARAHPNASLFLRNCLLASYCRLGVGAPLHAARLLDEMPR 64

Query: 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295
           R+ V +N +I  +++      +L  + R +      D+ T  + L AC+    +  G  V
Sbjct: 65  RNAVSYNLVIVAYSRAGLPALSLATFARARAWARVVDRFTYAAALAACSRALDVRTGKAV 124

Query: 296 HVHVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
           H  V+     + L L+N++  MY +CG + +A  VF    ++D +SW+ ++SG  + G  
Sbjct: 125 HAMVVLGGLGNGLFLSNSVASMYARCGEMGEARRVFDAAEERDDVSWNALLSGYVRAGAR 184

Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFAC------SHAGFVEDG----WNHFKSMKKFYG 403
           +E L++F  M    +  N   +  ++  C      + AG V  G      H   +K   G
Sbjct: 185 EETLEVFSLMCRHGLGWNSFALGSIIKCCASSSSYAAAGDVGGGRIAEAVHGCVVKA--G 242

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL-GACK 451
           +D      S MID+  + G L  AV L   +P +P+ +   A++ G C+
Sbjct: 243 LDADLFLASAMIDMYAKRGALTNAVALFKSVP-DPNVIVLNAMIAGFCR 290


>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g13270, chloroplastic; Flags: Precursor
 gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
 gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 752

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/616 (37%), Positives = 341/616 (55%), Gaps = 21/616 (3%)

Query: 38  NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVH 97
           N+ S     + +  Q  L +A+     M   G +  S  Y  L+K  +   A++  + +H
Sbjct: 148 NAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIH 207

Query: 98  NHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMND 157
            HV+  G    T +   ++NM+VK   L  A+ +FDQM  +  V+ T ++  Y  A    
Sbjct: 208 AHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQAGRAR 267

Query: 158 KALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALI 214
            AL+L + ++ EGV  + F +S VL+AC SL  L   +Q+H  + K+G ES+V V + L+
Sbjct: 268 DALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLV 327

Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
           D Y K     +A   F E+   + V W++II G+ Q S  +EA+  +K ++    +   S
Sbjct: 328 DFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNS 387

Query: 275 -TLTSVLRACTGLALLELGTQVHVHVLKYDHDLILN----NALLDMYCKCGSLEDAMSVF 329
            T TS+ +AC+ LA   +G QVH   +K    LI +    +AL+ MY KCG L+DA  VF
Sbjct: 388 FTYTSIFQACSVLADCNIGGQVHADAIK--RSLIGSQYGESALITMYSKCGCLDDANEVF 445

Query: 330 SRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
             M   D+++W+  ISG A  G + EAL+LFE M    +KPN +T + VL ACSHAG VE
Sbjct: 446 ESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVE 505

Query: 390 DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGA 449
            G +   +M + Y + P  +HY CMID+  R+G L EA+K +  MP+EPDA++W+  L  
Sbjct: 506 QGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFEPDAMSWKCFLSG 565

Query: 450 CKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEP 509
           C  H+N +L   A +++  LDP+D   Y+L  N+Y  + KW+E AE+ K M  R + KE 
Sbjct: 566 CWTHKNLELGEIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEMMKLMNERMLKKEL 625

Query: 510 GCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKE 569
            CSWI+   +IH F V D  HPQ  +I + LK     + G  +  +           ++ 
Sbjct: 626 SCSWIQEKGKIHRFIVGDKHHPQTQEIYEKLKEFDGFMEGDMFQCNMT---------ERR 676

Query: 570 DSIQYHSEKLAIVFGLMSL--TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPI 627
           + +  HSE+LAI FGL+S+       I++ KNLR C DCH FAK  + +    IVIRD  
Sbjct: 677 EQLLDHSERLAIAFGLISVHGNAPAPIKVFKNLRACPDCHEFAKHVSLVTGHEIVIRDSR 736

Query: 628 RYHHFQDGNCSCGDYW 643
           R+HHF++G CSC DYW
Sbjct: 737 RFHHFKEGKCSCNDYW 752



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/425 (29%), Positives = 205/425 (48%), Gaps = 12/425 (2%)

Query: 52  QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111
            R L  A + +  M   GV   S +Y  L + C    ++   +L+H+ +  G   P   L
Sbjct: 61  HRKLNEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRMGIENPSVLL 120

Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGV 171
            N +L M+ +   LE+A  LFD+M E N VS TTMISAY +  + DKA+ L   ML  G 
Sbjct: 121 QNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGD 180

Query: 172 RPNMFTYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
           +P    Y+ +L++     +L   RQ+H  +I+ G  S+  + + ++++Y K G L  A+ 
Sbjct: 181 KPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKR 240

Query: 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288
           VF++M  +  V    ++ G+ Q     +AL L+  +   G   D    + VL+AC  L  
Sbjct: 241 VFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEE 300

Query: 289 LELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISG 346
           L LG Q+H  V K   + ++ +   L+D Y KC S E A   F  + + + +SWS +ISG
Sbjct: 301 LNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISG 360

Query: 347 LAQNGYSQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVEDGWN-HFKSMKK-FYG 403
             Q    +EA+K F+S++       N  T   +  ACS       G   H  ++K+   G
Sbjct: 361 YCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIG 420

Query: 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463
              G    S +I +  + G L +A ++   M   PD V W A +     + N   A+   
Sbjct: 421 SQYGE---SALITMYSKCGCLDDANEVFESMD-NPDIVAWTAFISGHAYYGNASEALRLF 476

Query: 464 KKILN 468
           +K+++
Sbjct: 477 EKMVS 481



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 44/259 (16%)

Query: 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH--VHVLKYDHD 305
            +++  ++EA    + M +AG +    +   +  AC  L  L  G  +H  + +   +  
Sbjct: 58  LSKHRKLNEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRMGIENPS 117

Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
           ++L N +L MYC+C SLEDA  +F  M + + +S +TMIS  A+ G   +A+ LF  M  
Sbjct: 118 VLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLA 177

Query: 366 SRIKPN---YITIVGVLFA-------------------CSHAG--------FVEDGWNHF 395
           S  KP    Y T++  L                     CS+          +V+ GW   
Sbjct: 178 SGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGW--L 235

Query: 396 KSMKKFYGIDPGREHYSCMIDLLG--RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
              K+ +     ++  +C   ++G  +AG+ ++A+KL  ++  E   V W + +      
Sbjct: 236 VGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTE--GVEWDSFV------ 287

Query: 454 RNTDLAICAAKKILNLDPQ 472
            +  L  CA+ + LNL  Q
Sbjct: 288 FSVVLKACASLEELNLGKQ 306


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/553 (37%), Positives = 334/553 (60%), Gaps = 6/553 (1%)

Query: 97  HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156
           H H++  G      L+  LL +      +   + LF  + + +   + ++I A  +   +
Sbjct: 30  HAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSNFGFS 89

Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQ---LHCGIIKVGFESDVFVRSAL 213
             A+     ML   + P+ +T+++V++AC  L +LR    +H  +   G+ S+ FV++AL
Sbjct: 90  LDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSFVQAAL 149

Query: 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273
           +  YAK    R A  VF+EMP R ++ WNS+I G+ QN    EA+ ++ +M+ +G   D 
Sbjct: 150 VTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDS 209

Query: 274 STLTSVLRACTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSR 331
           +T  SVL AC+ L  L+LG  +H  ++      +++L  +L++M+ +CG +  A +VF  
Sbjct: 210 ATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDS 269

Query: 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391
           M + +V+SW+ MISG   +GY  EA+++F  MK   + PN +T V VL AC+HAG + +G
Sbjct: 270 MNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEG 329

Query: 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP-DAVTWRALLGAC 450
              F SMK+ YG+ PG EH+ CM+D+ GR G L EA + +  +  E      W A+LGAC
Sbjct: 330 RLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGAC 389

Query: 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510
           K+H+N DL +  A+ +++ +P++PG Y+LLSN+YA + + D V  VR  M  RG+ K+ G
Sbjct: 390 KMHKNFDLGVEVAENLISAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVG 449

Query: 511 CSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKED 570
            S I+V  + + F++ D SHP+ ++I  +L  L+ +    GYAP     + +LE E++E 
Sbjct: 450 YSTIDVENRSYLFSMGDKSHPETNEIYCYLDELMWRCKDAGYAPAPESAMHELEEEEREY 509

Query: 571 SIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYH 630
           +++YHSEKLA+ FGLM    G T+RI KNLRIC DCH+  K  + + N+ I++RD +R+H
Sbjct: 510 ALRYHSEKLAVAFGLMKTCHGVTLRIVKNLRICEDCHSAIKFISVVMNREIIVRDKLRFH 569

Query: 631 HFQDGNCSCGDYW 643
           HF++G+CSC DYW
Sbjct: 570 HFREGSCSCSDYW 582



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 144/281 (51%), Gaps = 10/281 (3%)

Query: 73  DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLF 132
            + T+  +IK C     +    +VH+HV   G+   +F+   L+  + K      A+ +F
Sbjct: 107 STYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVF 166

Query: 133 DQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192
           D+MP+R++++W +MIS Y    +  +A+E+   M   G  P+  T+ +VL AC  L  L 
Sbjct: 167 DEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLD 226

Query: 193 ---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA 249
               LH  I+  G   +V + ++L++++++ G++  A  VF+ M   ++V W ++I G+ 
Sbjct: 227 LGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYG 286

Query: 250 QNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLIL- 308
            +    EA+ ++ RMK  G   ++ T  +VL AC    L+  G  V    +K ++ ++  
Sbjct: 287 MHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRLVFAS-MKQEYGVVPG 345

Query: 309 ---NNALLDMYCKCGSLEDAMSVFSRMIQKDVIS--WSTMI 344
              +  ++DM+ + G L +A      +  ++++   W+ M+
Sbjct: 346 VEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVPAVWTAML 386



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 136/279 (48%), Gaps = 6/279 (2%)

Query: 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
           Y AV+ A   L  L+Q H  ++  G      + + L+ +    G +     +F  +   D
Sbjct: 13  YEAVVSAGPHLRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPD 72

Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
             ++NS+I   +      +A+  Y+RM  +       T TSV++AC  L+LL LGT VH 
Sbjct: 73  SFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHS 132

Query: 298 HVL--KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
           HV    Y  +  +  AL+  Y K  +   A  VF  M Q+ +I+W++MISG  QNG + E
Sbjct: 133 HVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASE 192

Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCM 414
           A+++F  M+ S  +P+  T V VL ACS  G ++ G W H   +    GI       + +
Sbjct: 193 AVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGT--GIRMNVVLATSL 250

Query: 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH 453
           +++  R G +  A  +   M  E + V+W A++    +H
Sbjct: 251 VNMFSRCGDVGRARAVFDSMN-EGNVVSWTAMISGYGMH 288



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 22/212 (10%)

Query: 58  AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
           A++  + M+  G   DS T+  ++  C    +++    +H  ++  G      L   L+N
Sbjct: 193 AVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVN 252

Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
           M  +   +  A+ +FD M E NVVSWT MIS Y       +A+E+   M   GV PN  T
Sbjct: 253 MFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVT 312

Query: 178 YSAVLRACDSLIILRQLHCGIIKVG---FES---------DVFVRSALIDIYAKLGELRN 225
           Y AVL AC         H G+I  G   F S          V     ++D++ + G L  
Sbjct: 313 YVAVLSACA--------HAGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNE 364

Query: 226 AECVFNEMPTRDLV--VWNSIIGGFAQNSDVD 255
           A      + + +LV  VW +++G    + + D
Sbjct: 365 AYQFVRGLSSEELVPAVWTAMLGACKMHKNFD 396


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.136    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,633,217,639
Number of Sequences: 23463169
Number of extensions: 382458820
Number of successful extensions: 1074081
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8501
Number of HSP's successfully gapped in prelim test: 3609
Number of HSP's that attempted gapping in prelim test: 867422
Number of HSP's gapped (non-prelim): 60728
length of query: 643
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 494
effective length of database: 8,863,183,186
effective search space: 4378412493884
effective search space used: 4378412493884
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)