BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045672
(643 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZV0|A Chain A, Structure Of The Shq1p-Cbf5p Complex
pdb|3ZV0|B Chain B, Structure Of The Shq1p-Cbf5p Complex
Length = 369
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
V IKP Y+TI+ VLF+ +G + +S + P S + L + +L
Sbjct: 148 VEDIKPLYVTILSVLFSYVFEQIENEGTHTTESAWTMGKLCP---QISFLDQQLKQVNEL 204
Query: 425 QEAVKLIHEMPYEPDAVTWRALLG-----ACKVHRNTDLAICA 462
Q+ +K I ++ + + + G + +HRN DLA+ A
Sbjct: 205 QDGMKEISKVNKDSSLIKIAIITGIRRALSYPLHRNYDLAMKA 247
>pdb|1LM7|A Chain A, Structures Of Two Intermediate Filament-Binding Fragments
Of Desmoplakin Reveal A Unique Repeat Motif Structure
pdb|1LM7|B Chain B, Structures Of Two Intermediate Filament-Binding Fragments
Of Desmoplakin Reveal A Unique Repeat Motif Structure
Length = 248
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
KD + S+ I+G+ N +++ L ++E+MK+ ++P T + +L A + GF+ D ++
Sbjct: 43 KDFLQGSSCIAGIY-NETTKQKLGIYEAMKIGLVRPG--TALELLEAQAATGFIVDPVSN 99
Query: 395 FK 396
+
Sbjct: 100 LR 101
>pdb|3ZUZ|A Chain A, Structure Of Shq1p C-Terminal Domain
Length = 365
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
V IKP Y+TI+ VLF+ +G + +S + P S + L + +L
Sbjct: 150 VEDIKPLYVTILSVLFSYVFEQIENEGTHTTESAWTMGKLCP---QISFLDQQLKQVNEL 206
Query: 425 QEAVKLIHEMPYEPDAVTWRALLG-----ACKVHRNTDLAICA 462
Q+ +K I ++ + + + G + +HRN DLA+ A
Sbjct: 207 QDGMKEISKVNKDSSLIKIAIITGIRRALSYPLHRNYDLAMKA 249
>pdb|3UAH|A Chain A, Structure Of The Shq1 Specific Domain From Saccharomyces
Cerevisiae
pdb|3UAI|D Chain D, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
Length = 366
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 365 VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424
V IKP Y+TI+ VLF+ +G + +S + P S + L + +L
Sbjct: 151 VEDIKPLYVTILSVLFSYVFEQIENEGTHTTESAWTMGKLCP---QISFLDQQLKQVNEL 207
Query: 425 QEAVKLIHEMPYEPDAVTWRALLG-----ACKVHRNTDLAICA 462
Q+ +K I ++ + + + G + +HRN DLA+ A
Sbjct: 208 QDGMKEISKVNKDSSLIKIAIITGIRRALSYPLHRNYDLAMKA 250
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 22/206 (10%)
Query: 312 LLDMYCKCGSLEDAMSVFSRMIQKDVI---SWSTMISGLAQNGYSQEALKLFESMKVSRI 368
L ++ +C L+ + + I+++ + ++S + + + G QEA++ + R+
Sbjct: 39 LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR--HALRL 96
Query: 369 KPNYIT-IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY---SCMIDLLGRAGKL 424
KP++I + + A AG +E + S ++ +P + Y S + +LL G+L
Sbjct: 97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NP--DLYCVRSDLGNLLKALGRL 151
Query: 425 QEA----VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480
+EA +K I P AV W L LAI +K + LDP YI L
Sbjct: 152 EEAKACYLKAIETQP--NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209
Query: 481 SNIYANSQKWDEVAEVRKTMRARGIT 506
N+ ++ +D V +RA ++
Sbjct: 210 GNVLKEARIFDRA--VAAYLRALSLS 233
>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770
Length = 285
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 50/117 (42%), Gaps = 22/117 (18%)
Query: 296 HVHVLKY-------DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
H HV++Y DH LI N YC GSL DA+S R++ + + L
Sbjct: 66 HSHVVRYFSAWAEDDHMLIQNE-----YCNGGSLADAISENYRIMS--YFKEAELKDLLL 118
Query: 349 QNGYSQEALKLFESMKVSR--IKPN--YITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
Q G L+ SM + IKP+ +I+ + A S G ED W K M K
Sbjct: 119 QVG---RGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEG-DEDDWASNKVMFKI 171
>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839
pdb|2IO6|A Chain A, Wee1 Kinase Complexed With Inhibitor Pd330961
Length = 287
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 50/117 (42%), Gaps = 22/117 (18%)
Query: 296 HVHVLKY-------DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
H HV++Y DH LI N YC GSL DA+S R++ + + L
Sbjct: 68 HSHVVRYFSAWAEDDHMLIQNE-----YCNGGSLADAISENYRIMS--YFKEAELKDLLL 120
Query: 349 QNGYSQEALKLFESMKVSR--IKPN--YITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
Q G L+ SM + IKP+ +I+ + A S G ED W K M K
Sbjct: 121 QVG---RGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEG-DEDDWASNKVMFKI 173
>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396
pdb|3BIZ|A Chain A, Wee1 Kinase Complex With Inhibitor Pd331618
pdb|3CQE|A Chain A, Wee1 Kinase Complex With Inhibitor Pd074291
pdb|3CR0|A Chain A, Wee1 Kinase Complex With Inhibitor Pd259_809
Length = 287
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 50/117 (42%), Gaps = 22/117 (18%)
Query: 296 HVHVLKY-------DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
H HV++Y DH LI N YC GSL DA+S R++ + + L
Sbjct: 68 HSHVVRYFSAWAEDDHMLIQNE-----YCNGGSLADAISENYRIMS--YFKEAELKDLLL 120
Query: 349 QNGYSQEALKLFESMKVSR--IKPN--YITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
Q G L+ SM + IKP+ +I+ + A S G ED W K M K
Sbjct: 121 QVG---RGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEG-DEDDWASNKVMFKI 173
>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed
With Inhibitor Pd0407824
Length = 289
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 50/117 (42%), Gaps = 22/117 (18%)
Query: 296 HVHVLKY-------DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
H HV++Y DH LI N YC GSL DA+S R++ + + L
Sbjct: 70 HSHVVRYFSAWAEDDHMLIQNE-----YCNGGSLADAISENYRIMS--YFKEAELKDLLL 122
Query: 349 QNGYSQEALKLFESMKVSR--IKPN--YITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
Q G L+ SM + IKP+ +I+ + A S G ED W K M K
Sbjct: 123 QVG---RGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEG-DEDDWASNKVMFKI 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,547,092
Number of Sequences: 62578
Number of extensions: 733820
Number of successful extensions: 1799
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1798
Number of HSP's gapped (non-prelim): 11
length of query: 643
length of database: 14,973,337
effective HSP length: 105
effective length of query: 538
effective length of database: 8,402,647
effective search space: 4520624086
effective search space used: 4520624086
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)