Query 045672
Match_columns 643
No_of_seqs 773 out of 4327
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 04:20:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 8E-123 2E-127 1022.6 72.0 608 36-643 84-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 8E-120 2E-124 1022.4 71.2 606 33-641 247-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 9.7E-75 2.1E-79 655.1 54.8 585 33-638 146-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.2E-63 2.6E-68 553.7 56.5 467 37-510 404-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.6E-61 5.7E-66 535.0 54.1 505 34-557 365-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 4.8E-57 1E-61 499.1 43.9 481 138-638 85-583 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.2E-27 1.1E-31 271.2 52.9 458 38-505 396-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-26 3.9E-31 266.7 53.7 459 36-504 360-833 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 1.5E-30 3.2E-35 212.3 8.4 106 510-633 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 3.2E-19 6.9E-24 207.7 53.1 456 38-503 61-666 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 8.6E-20 1.9E-24 180.4 35.5 439 42-493 51-509 (966)
12 PRK11447 cellulose synthase su 99.9 8.5E-19 1.8E-23 204.1 49.6 450 42-506 238-744 (1157)
13 PRK11788 tetratricopeptide rep 99.9 6.3E-20 1.4E-24 190.4 29.5 299 46-373 42-354 (389)
14 TIGR00990 3a0801s09 mitochondr 99.9 4.2E-18 9.1E-23 186.3 43.4 417 77-503 130-571 (615)
15 PRK09782 bacteriophage N4 rece 99.9 1.4E-16 3E-21 177.6 52.1 449 40-504 79-707 (987)
16 PRK11788 tetratricopeptide rep 99.9 5.2E-19 1.1E-23 183.6 30.2 294 214-510 42-354 (389)
17 KOG4626 O-linked N-acetylgluco 99.9 2.4E-18 5.1E-23 170.3 32.0 418 77-504 51-486 (966)
18 PRK09782 bacteriophage N4 rece 99.8 5.3E-16 1.1E-20 173.0 46.6 447 41-504 44-673 (987)
19 PRK10049 pgaA outer membrane p 99.8 1.1E-16 2.4E-21 178.4 40.4 394 44-503 20-456 (765)
20 PRK10049 pgaA outer membrane p 99.8 1.4E-15 3.1E-20 169.5 45.4 371 38-476 48-463 (765)
21 TIGR00990 3a0801s09 mitochondr 99.8 1.3E-15 2.7E-20 166.8 42.6 414 42-473 130-575 (615)
22 PRK15174 Vi polysaccharide exp 99.8 5.9E-16 1.3E-20 168.8 39.2 337 115-502 48-402 (656)
23 PRK15174 Vi polysaccharide exp 99.8 1.4E-15 3E-20 166.0 40.1 317 78-434 46-378 (656)
24 PRK14574 hmsH outer membrane p 99.8 1.7E-14 3.6E-19 157.9 42.7 422 42-503 38-513 (822)
25 KOG4422 Uncharacterized conser 99.7 7.6E-14 1.7E-18 133.0 38.3 416 39-468 116-589 (625)
26 KOG2002 TPR-containing nuclear 99.7 4.1E-14 8.9E-19 148.1 38.0 467 34-506 265-801 (1018)
27 PRK14574 hmsH outer membrane p 99.7 3E-13 6.5E-18 148.1 44.2 391 77-503 38-479 (822)
28 KOG2003 TPR repeat-containing 99.7 1.5E-13 3.2E-18 131.8 32.6 442 44-489 206-709 (840)
29 KOG2002 TPR-containing nuclear 99.6 6.9E-12 1.5E-16 131.7 39.2 453 52-515 177-685 (1018)
30 KOG4422 Uncharacterized conser 99.6 3E-12 6.5E-17 122.4 33.0 231 40-301 208-461 (625)
31 PF13429 TPR_15: Tetratricopep 99.6 1.4E-14 3.1E-19 142.4 10.9 251 213-501 14-275 (280)
32 KOG0495 HAT repeat protein [RN 99.6 7.5E-10 1.6E-14 111.6 43.5 456 48-516 415-891 (913)
33 KOG0495 HAT repeat protein [RN 99.5 1.5E-09 3.3E-14 109.5 41.9 411 84-504 386-847 (913)
34 KOG0547 Translocase of outer m 99.5 2E-10 4.3E-15 112.1 33.5 211 286-501 339-564 (606)
35 KOG2076 RNA polymerase III tra 99.5 9E-11 2E-15 122.7 32.9 332 150-513 149-522 (895)
36 PRK10747 putative protoheme IX 99.5 3.1E-11 6.8E-16 124.3 29.3 285 122-470 97-391 (398)
37 KOG1915 Cell cycle control pro 99.5 5E-10 1.1E-14 108.7 34.6 403 73-513 72-510 (677)
38 KOG2076 RNA polymerase III tra 99.5 2.4E-09 5.1E-14 112.3 41.3 445 51-497 151-728 (895)
39 PRK10747 putative protoheme IX 99.5 5.9E-11 1.3E-15 122.3 29.2 274 220-502 97-389 (398)
40 TIGR00540 hemY_coli hemY prote 99.4 2E-10 4.3E-15 119.0 31.7 292 43-363 86-396 (409)
41 KOG2003 TPR repeat-containing 99.4 9.1E-11 2E-15 112.9 25.4 420 79-503 206-689 (840)
42 KOG1126 DNA-binding cell divis 99.4 1.9E-11 4.2E-16 123.8 21.4 272 222-502 334-619 (638)
43 KOG4318 Bicoid mRNA stability 99.4 2.1E-10 4.5E-15 119.4 29.1 451 35-513 21-603 (1088)
44 KOG1155 Anaphase-promoting com 99.4 1E-09 2.3E-14 106.5 31.8 284 213-501 233-534 (559)
45 PF13429 TPR_15: Tetratricopep 99.4 1.8E-12 3.8E-17 127.5 11.7 247 182-468 15-276 (280)
46 KOG1173 Anaphase-promoting com 99.4 3.1E-09 6.7E-14 105.9 33.8 457 37-502 14-517 (611)
47 KOG1126 DNA-binding cell divis 99.4 1.4E-10 3.1E-15 117.6 23.9 256 208-473 354-624 (638)
48 TIGR00540 hemY_coli hemY prote 99.4 1.5E-09 3.3E-14 112.4 32.6 250 215-467 126-397 (409)
49 KOG1915 Cell cycle control pro 99.3 2.3E-07 5E-12 90.7 42.3 438 37-484 71-550 (677)
50 COG3071 HemY Uncharacterized e 99.3 6.7E-09 1.5E-13 99.6 31.1 297 44-370 87-394 (400)
51 KOG0547 Translocase of outer m 99.3 1.5E-08 3.3E-13 99.2 33.7 405 43-471 119-568 (606)
52 COG2956 Predicted N-acetylgluc 99.3 2.2E-09 4.8E-14 99.6 26.6 221 52-301 48-277 (389)
53 KOG1155 Anaphase-promoting com 99.3 9.4E-09 2E-13 100.0 31.9 254 244-502 233-494 (559)
54 TIGR02521 type_IV_pilW type IV 99.3 7.9E-10 1.7E-14 105.5 24.1 196 306-502 31-231 (234)
55 KOG2376 Signal recognition par 99.3 1.2E-07 2.6E-12 95.2 39.2 435 44-499 17-516 (652)
56 PF13041 PPR_2: PPR repeat fam 99.3 5.5E-12 1.2E-16 87.2 5.6 50 37-86 1-50 (50)
57 PF13041 PPR_2: PPR repeat fam 99.3 1.4E-11 3.1E-16 85.1 6.9 50 335-384 1-50 (50)
58 COG2956 Predicted N-acetylgluc 99.3 9.4E-09 2E-13 95.6 27.1 286 122-468 48-346 (389)
59 KOG4162 Predicted calmodulin-b 99.3 8.4E-08 1.8E-12 99.3 36.1 395 104-503 318-783 (799)
60 KOG4318 Bicoid mRNA stability 99.2 5.3E-09 1.2E-13 109.2 27.3 421 60-502 11-556 (1088)
61 KOG2047 mRNA splicing factor [ 99.2 3E-07 6.5E-12 93.2 38.4 453 40-502 103-686 (835)
62 KOG1174 Anaphase-promoting com 99.2 2.3E-07 5E-12 89.2 34.7 364 108-476 96-507 (564)
63 KOG1840 Kinesin light chain [C 99.2 9.9E-09 2.1E-13 105.5 27.5 230 273-502 199-478 (508)
64 KOG1173 Anaphase-promoting com 99.2 5.5E-08 1.2E-12 97.2 31.2 440 35-481 47-530 (611)
65 COG3071 HemY Uncharacterized e 99.2 3.6E-08 7.7E-13 94.7 28.7 283 122-468 97-389 (400)
66 PRK12370 invasion protein regu 99.2 1.1E-08 2.3E-13 110.3 26.5 259 237-504 255-536 (553)
67 KOG2047 mRNA splicing factor [ 99.2 1.2E-06 2.5E-11 89.1 38.3 423 75-501 103-613 (835)
68 KOG3785 Uncharacterized conser 99.1 3.9E-07 8.4E-12 85.9 31.2 91 46-137 29-119 (557)
69 TIGR02521 type_IV_pilW type IV 99.1 3.1E-08 6.8E-13 94.4 24.6 196 238-469 31-232 (234)
70 KOG1840 Kinesin light chain [C 99.1 4E-08 8.7E-13 101.1 26.2 233 207-468 199-478 (508)
71 PRK12370 invasion protein regu 99.1 2.6E-08 5.7E-13 107.3 23.8 210 287-503 275-502 (553)
72 KOG1129 TPR repeat-containing 99.1 8E-09 1.7E-13 95.9 16.5 229 242-504 227-459 (478)
73 PRK11189 lipoprotein NlpI; Pro 99.0 7.5E-08 1.6E-12 95.0 23.6 208 288-504 41-266 (296)
74 PRK11189 lipoprotein NlpI; Pro 98.9 6.1E-07 1.3E-11 88.5 25.8 217 251-474 39-270 (296)
75 COG3063 PilF Tfp pilus assembl 98.9 1.3E-07 2.7E-12 84.4 18.3 163 339-505 37-204 (250)
76 PF12569 NARP1: NMDA receptor- 98.9 2.1E-05 4.5E-10 82.4 37.0 425 47-498 12-515 (517)
77 KOG1174 Anaphase-promoting com 98.9 1.5E-05 3.2E-10 77.1 31.9 259 237-502 231-499 (564)
78 KOG1156 N-terminal acetyltrans 98.9 4.1E-05 9E-10 78.4 36.6 447 42-501 11-509 (700)
79 KOG1129 TPR repeat-containing 98.9 1.4E-07 2.9E-12 88.0 17.1 225 206-434 222-455 (478)
80 KOG3785 Uncharacterized conser 98.9 2.8E-06 6E-11 80.3 25.8 403 82-504 30-491 (557)
81 KOG1156 N-terminal acetyltrans 98.8 2.7E-05 5.9E-10 79.7 33.7 389 75-505 9-470 (700)
82 KOG4162 Predicted calmodulin-b 98.8 6E-05 1.3E-09 78.8 35.5 419 49-475 294-789 (799)
83 KOG0624 dsRNA-activated protei 98.8 2.1E-05 4.6E-10 74.2 28.7 210 112-373 41-257 (504)
84 COG3063 PilF Tfp pilus assembl 98.8 3.8E-06 8.3E-11 75.1 22.1 199 241-473 38-240 (250)
85 PF12569 NARP1: NMDA receptor- 98.8 1.1E-05 2.3E-10 84.5 29.1 285 213-502 10-333 (517)
86 KOG3616 Selective LIM binding 98.8 3E-05 6.4E-10 80.0 30.5 406 44-503 562-1024(1636)
87 KOG3616 Selective LIM binding 98.7 9.5E-06 2.1E-10 83.5 26.9 102 43-163 537-638 (1636)
88 PF04733 Coatomer_E: Coatomer 98.7 1.5E-07 3.3E-12 91.5 13.8 245 216-502 10-264 (290)
89 PF04733 Coatomer_E: Coatomer 98.7 1.1E-06 2.4E-11 85.5 19.3 153 214-401 109-265 (290)
90 KOG1125 TPR repeat-containing 98.7 3.6E-07 7.8E-12 91.9 16.1 217 284-502 296-526 (579)
91 KOG4340 Uncharacterized conser 98.7 1E-05 2.2E-10 74.8 24.0 407 42-503 13-443 (459)
92 KOG0548 Molecular co-chaperone 98.7 1.4E-05 3E-10 80.1 26.0 421 48-503 11-455 (539)
93 cd05804 StaR_like StaR_like; a 98.7 3.5E-05 7.5E-10 78.8 30.6 295 209-504 8-337 (355)
94 KOG0985 Vesicle coat protein c 98.7 0.00013 2.9E-09 78.1 34.2 238 237-500 983-1246(1666)
95 KOG1070 rRNA processing protei 98.7 2.5E-06 5.4E-11 93.9 21.2 201 302-506 1454-1666(1710)
96 KOG0985 Vesicle coat protein c 98.7 0.00027 5.9E-09 75.8 35.2 427 37-501 836-1368(1666)
97 PRK04841 transcriptional regul 98.6 0.00011 2.5E-09 85.2 34.2 294 211-504 413-761 (903)
98 KOG3617 WD40 and TPR repeat-co 98.6 7.5E-05 1.6E-09 78.3 28.3 408 34-498 721-1169(1416)
99 TIGR03302 OM_YfiO outer membra 98.6 6.3E-06 1.4E-10 78.8 19.4 178 306-503 33-232 (235)
100 PF12854 PPR_1: PPR repeat 98.6 1.1E-07 2.3E-12 58.9 4.2 34 201-234 1-34 (34)
101 KOG1127 TPR repeat-containing 98.5 8.2E-05 1.8E-09 79.8 26.0 447 37-502 594-1103(1238)
102 PRK04841 transcriptional regul 98.5 0.00078 1.7E-08 78.3 37.3 259 213-472 458-763 (903)
103 cd05804 StaR_like StaR_like; a 98.5 0.00025 5.4E-09 72.5 29.4 266 238-504 6-294 (355)
104 PRK10370 formate-dependent nit 98.5 1.7E-05 3.7E-10 72.8 18.5 118 385-504 52-174 (198)
105 PF12854 PPR_1: PPR repeat 98.5 1.9E-07 4.1E-12 57.8 3.8 33 104-136 2-34 (34)
106 KOG2376 Signal recognition par 98.5 0.0011 2.3E-08 67.6 31.8 338 115-498 18-400 (652)
107 PRK15359 type III secretion sy 98.5 7.4E-06 1.6E-10 71.1 14.7 121 359-485 15-137 (144)
108 KOG1127 TPR repeat-containing 98.4 0.00028 6E-09 75.9 28.5 174 323-501 800-994 (1238)
109 KOG3617 WD40 and TPR repeat-co 98.4 0.00063 1.4E-08 71.6 30.2 119 38-166 756-884 (1416)
110 KOG0548 Molecular co-chaperone 98.4 0.00046 1E-08 69.5 27.9 409 33-487 30-473 (539)
111 PRK15359 type III secretion sy 98.4 1.1E-05 2.4E-10 70.0 13.6 106 394-504 15-122 (144)
112 KOG1070 rRNA processing protei 98.4 6.9E-05 1.5E-09 83.0 22.3 192 276-470 1461-1664(1710)
113 KOG4340 Uncharacterized conser 98.3 0.00013 2.8E-09 67.7 20.3 279 211-498 14-334 (459)
114 PRK10370 formate-dependent nit 98.3 8.3E-05 1.8E-09 68.3 19.1 156 312-478 22-182 (198)
115 PLN02789 farnesyltranstransfer 98.3 0.00024 5.3E-09 70.2 23.5 177 321-500 87-299 (320)
116 COG5010 TadD Flp pilus assembl 98.3 4.5E-05 9.7E-10 69.9 16.7 134 369-504 63-198 (257)
117 KOG0624 dsRNA-activated protei 98.3 0.0019 4.2E-08 61.4 27.0 329 73-476 37-377 (504)
118 TIGR03302 OM_YfiO outer membra 98.3 9.4E-05 2E-09 70.6 18.7 179 272-471 32-234 (235)
119 KOG1128 Uncharacterized conser 98.2 4.5E-05 9.8E-10 79.2 16.6 188 302-504 394-583 (777)
120 KOG1125 TPR repeat-containing 98.2 7.4E-05 1.6E-09 75.7 17.7 240 248-491 295-559 (579)
121 PRK15179 Vi polysaccharide bio 98.2 0.0001 2.3E-09 80.2 20.2 190 276-479 31-227 (694)
122 KOG1914 mRNA cleavage and poly 98.2 0.0089 1.9E-07 60.6 34.5 78 71-150 17-96 (656)
123 KOG1128 Uncharacterized conser 98.2 0.0002 4.3E-09 74.6 20.8 217 202-434 393-613 (777)
124 PRK15363 pathogenicity island 98.2 1.6E-05 3.5E-10 67.8 10.7 96 407-502 34-131 (157)
125 PRK14720 transcript cleavage f 98.2 0.00042 9.2E-09 76.3 24.3 233 206-485 30-268 (906)
126 TIGR00756 PPR pentatricopeptid 98.2 3.3E-06 7.2E-11 53.0 4.7 35 338-372 1-35 (35)
127 PRK15179 Vi polysaccharide bio 98.2 0.0003 6.5E-09 76.7 22.5 192 240-447 30-229 (694)
128 TIGR00756 PPR pentatricopeptid 98.2 2.3E-06 5E-11 53.8 3.9 35 40-74 1-35 (35)
129 TIGR02552 LcrH_SycD type III s 98.1 3.7E-05 8.1E-10 66.2 12.2 98 407-504 16-115 (135)
130 COG4783 Putative Zn-dependent 98.1 0.0051 1.1E-07 61.7 27.8 135 347-503 316-454 (484)
131 COG4783 Putative Zn-dependent 98.1 0.00033 7.2E-09 69.9 19.3 121 380-502 314-436 (484)
132 COG5010 TadD Flp pilus assembl 98.1 0.00055 1.2E-08 63.0 19.0 154 310-466 70-228 (257)
133 KOG1914 mRNA cleavage and poly 98.1 0.016 3.4E-07 58.8 36.6 438 37-500 18-536 (656)
134 PLN02789 farnesyltranstransfer 98.1 0.003 6.4E-08 62.5 25.8 224 244-472 43-305 (320)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 7.3E-05 1.6E-09 75.3 14.6 123 374-501 171-295 (395)
136 KOG3081 Vesicle coat complex C 98.1 0.005 1.1E-07 56.8 24.3 70 423-492 188-259 (299)
137 PF13812 PPR_3: Pentatricopept 98.0 6.7E-06 1.5E-10 51.2 3.8 34 39-72 1-34 (34)
138 PF13812 PPR_3: Pentatricopept 98.0 1E-05 2.2E-10 50.4 4.5 33 338-370 2-34 (34)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00022 4.7E-09 71.9 16.1 128 308-438 171-298 (395)
140 KOG3060 Uncharacterized conser 98.0 0.0023 5E-08 58.5 19.9 164 314-480 60-231 (289)
141 TIGR02552 LcrH_SycD type III s 98.0 0.0003 6.5E-09 60.5 14.2 113 359-475 5-120 (135)
142 PRK14720 transcript cleavage f 97.9 0.005 1.1E-07 68.2 25.5 169 138-366 29-198 (906)
143 KOG2053 Mitochondrial inherita 97.9 0.055 1.2E-06 58.4 38.8 214 50-268 20-256 (932)
144 KOG3060 Uncharacterized conser 97.9 0.0031 6.7E-08 57.7 19.0 162 339-504 54-221 (289)
145 KOG3081 Vesicle coat complex C 97.9 0.0026 5.7E-08 58.6 18.6 148 350-504 85-237 (299)
146 PF01535 PPR: PPR repeat; Int 97.8 2.3E-05 5E-10 47.5 3.2 31 40-70 1-31 (31)
147 PF09976 TPR_21: Tetratricopep 97.8 0.0008 1.7E-08 58.6 14.2 114 385-499 24-143 (145)
148 cd00189 TPR Tetratricopeptide 97.8 0.00027 5.9E-09 55.8 10.2 92 411-502 3-96 (100)
149 PF01535 PPR: PPR repeat; Int 97.8 3.4E-05 7.3E-10 46.8 3.6 31 338-368 1-31 (31)
150 PF12895 Apc3: Anaphase-promot 97.7 4.2E-05 9.2E-10 59.4 4.5 78 421-499 2-83 (84)
151 PF13414 TPR_11: TPR repeat; P 97.7 9.7E-05 2.1E-09 54.9 6.3 64 439-502 2-66 (69)
152 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00051 1.1E-08 57.4 11.1 93 411-503 5-105 (119)
153 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.001 2.2E-08 55.6 12.1 103 375-477 5-113 (119)
154 PF13432 TPR_16: Tetratricopep 97.6 0.00018 4E-09 52.6 6.1 58 446-503 3-60 (65)
155 PF09976 TPR_21: Tetratricopep 97.6 0.0023 5E-08 55.7 14.0 125 40-166 13-144 (145)
156 PRK10153 DNA-binding transcrip 97.5 0.0047 1E-07 65.4 17.6 61 441-502 421-481 (517)
157 PLN03088 SGT1, suppressor of 97.5 0.00074 1.6E-08 68.4 11.0 107 378-486 8-116 (356)
158 PRK02603 photosystem I assembl 97.5 0.0013 2.9E-08 59.1 11.5 81 409-489 36-121 (172)
159 PF05843 Suf: Suppressor of fo 97.4 0.0052 1.1E-07 60.0 15.4 143 338-484 2-150 (280)
160 KOG0553 TPR repeat-containing 97.4 0.0014 3E-08 61.6 10.5 97 382-481 91-190 (304)
161 CHL00033 ycf3 photosystem I as 97.4 0.0017 3.6E-08 58.2 11.0 93 408-500 35-139 (168)
162 KOG0553 TPR repeat-containing 97.4 0.00052 1.1E-08 64.4 7.7 87 416-502 89-177 (304)
163 cd00189 TPR Tetratricopeptide 97.4 0.0022 4.8E-08 50.4 10.8 60 340-400 3-62 (100)
164 KOG1538 Uncharacterized conser 97.4 0.02 4.4E-07 59.1 19.2 207 198-467 626-844 (1081)
165 PLN03088 SGT1, suppressor of 97.4 0.0033 7.1E-08 63.7 14.0 104 343-449 8-112 (356)
166 PF04840 Vps16_C: Vps16, C-ter 97.4 0.17 3.7E-06 50.1 25.4 105 210-328 180-284 (319)
167 PF04840 Vps16_C: Vps16, C-ter 97.4 0.18 3.9E-06 49.9 28.8 102 313-431 184-285 (319)
168 PRK02603 photosystem I assembl 97.4 0.0078 1.7E-07 54.1 14.7 131 336-489 34-166 (172)
169 COG4235 Cytochrome c biogenesi 97.3 0.0078 1.7E-07 57.0 14.8 105 405-509 153-262 (287)
170 KOG0550 Molecular chaperone (D 97.3 0.0068 1.5E-07 59.4 14.5 156 345-504 177-351 (486)
171 PF14559 TPR_19: Tetratricopep 97.3 0.0003 6.4E-09 52.0 4.2 53 451-503 2-54 (68)
172 PF08579 RPM2: Mitochondrial r 97.3 0.0036 7.7E-08 49.8 9.9 81 41-121 27-116 (120)
173 PF13432 TPR_16: Tetratricopep 97.3 0.0011 2.4E-08 48.4 6.9 61 414-474 3-65 (65)
174 COG3898 Uncharacterized membra 97.3 0.19 4E-06 49.3 22.9 283 210-503 85-392 (531)
175 PF13371 TPR_9: Tetratricopept 97.3 0.0009 1.9E-08 50.2 6.2 57 448-504 3-59 (73)
176 PF14938 SNAP: Soluble NSF att 97.2 0.016 3.5E-07 56.8 16.6 107 378-484 120-245 (282)
177 PRK10866 outer membrane biogen 97.2 0.046 1E-06 52.0 19.0 169 314-501 40-239 (243)
178 COG3898 Uncharacterized membra 97.2 0.25 5.4E-06 48.4 27.8 248 241-494 85-349 (531)
179 PF12895 Apc3: Anaphase-promot 97.2 0.0013 2.7E-08 51.0 6.6 80 350-433 2-83 (84)
180 PF14938 SNAP: Soluble NSF att 97.2 0.2 4.4E-06 49.0 23.6 100 41-167 37-142 (282)
181 COG4700 Uncharacterized protei 97.2 0.012 2.7E-07 51.1 12.8 100 403-502 84-188 (251)
182 CHL00033 ycf3 photosystem I as 97.1 0.029 6.3E-07 50.2 16.0 81 337-419 35-117 (168)
183 PF10037 MRP-S27: Mitochondria 97.1 0.0063 1.4E-07 61.9 12.7 119 68-186 60-184 (429)
184 PRK15331 chaperone protein Sic 97.1 0.0055 1.2E-07 52.8 10.3 90 413-502 42-133 (165)
185 PF13431 TPR_17: Tetratricopep 97.1 0.00032 6.8E-09 43.3 2.0 34 462-495 1-34 (34)
186 PF05843 Suf: Suppressor of fo 97.1 0.014 3E-07 57.0 14.3 125 240-365 3-135 (280)
187 PF07079 DUF1347: Protein of u 97.1 0.39 8.3E-06 48.2 36.5 72 429-501 445-522 (549)
188 KOG2053 Mitochondrial inherita 97.0 0.74 1.6E-05 50.2 35.1 190 42-235 44-254 (932)
189 COG4700 Uncharacterized protei 97.0 0.1 2.3E-06 45.6 16.8 131 368-502 85-221 (251)
190 KOG1130 Predicted G-alpha GTPa 97.0 0.0059 1.3E-07 59.6 10.2 129 374-502 197-343 (639)
191 PF12688 TPR_5: Tetratrico pep 97.0 0.021 4.5E-07 47.2 12.2 89 244-332 7-101 (120)
192 PF14559 TPR_19: Tetratricopep 97.0 0.0013 2.7E-08 48.6 4.5 59 384-444 3-62 (68)
193 PF06239 ECSIT: Evolutionarily 96.9 0.015 3.3E-07 52.4 11.6 107 71-192 44-155 (228)
194 KOG2796 Uncharacterized conser 96.9 0.08 1.7E-06 48.9 16.1 167 210-378 139-325 (366)
195 PRK10153 DNA-binding transcrip 96.9 0.041 8.8E-07 58.5 16.6 141 333-475 333-488 (517)
196 KOG1258 mRNA processing protei 96.9 0.72 1.6E-05 48.1 29.4 405 38-489 44-490 (577)
197 PF08579 RPM2: Mitochondrial r 96.9 0.016 3.4E-07 46.3 10.0 79 341-420 29-116 (120)
198 PF06239 ECSIT: Evolutionarily 96.9 0.011 2.5E-07 53.2 10.4 97 326-423 34-153 (228)
199 PF10037 MRP-S27: Mitochondria 96.9 0.023 5E-07 57.9 13.8 119 267-385 60-186 (429)
200 PRK10803 tol-pal system protei 96.8 0.0094 2E-07 57.1 10.3 94 410-503 145-246 (263)
201 PF12688 TPR_5: Tetratrico pep 96.8 0.04 8.7E-07 45.6 12.2 91 343-433 7-100 (120)
202 PF13414 TPR_11: TPR repeat; P 96.7 0.0043 9.4E-08 45.8 5.9 65 407-471 2-69 (69)
203 PRK15363 pathogenicity island 96.7 0.062 1.3E-06 46.2 13.1 93 310-403 39-134 (157)
204 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.0087 1.9E-07 60.3 8.8 62 408-469 75-141 (453)
205 PRK10866 outer membrane biogen 96.6 0.35 7.6E-06 46.0 19.2 54 214-267 39-98 (243)
206 PF13428 TPR_14: Tetratricopep 96.6 0.0045 9.8E-08 40.9 4.5 41 442-482 3-43 (44)
207 KOG2280 Vacuolar assembly/sort 96.6 1.4 3E-05 47.2 27.7 98 67-165 425-532 (829)
208 COG5107 RNA14 Pre-mRNA 3'-end 96.4 1.3 2.8E-05 44.5 31.7 134 337-473 397-535 (660)
209 KOG2041 WD40 repeat protein [G 96.4 1.8 3.8E-05 46.0 30.0 200 71-296 689-901 (1189)
210 KOG2796 Uncharacterized conser 96.4 0.21 4.5E-06 46.3 14.9 134 339-472 179-318 (366)
211 PF13281 DUF4071: Domain of un 96.3 0.75 1.6E-05 46.1 19.7 159 311-472 146-337 (374)
212 KOG2114 Vacuolar assembly/sort 96.3 2.3 5E-05 46.3 26.5 175 43-236 338-519 (933)
213 PF13371 TPR_9: Tetratricopept 96.3 0.019 4.1E-07 42.9 6.8 63 416-478 3-67 (73)
214 KOG2041 WD40 repeat protein [G 96.2 0.97 2.1E-05 47.8 20.5 57 302-363 848-904 (1189)
215 PF09205 DUF1955: Domain of un 96.2 0.44 9.5E-06 39.3 14.1 140 348-506 13-152 (161)
216 PF13424 TPR_12: Tetratricopep 96.1 0.0093 2E-07 45.3 4.7 61 442-502 7-74 (78)
217 PRK10803 tol-pal system protei 96.1 0.13 2.9E-06 49.3 13.2 100 375-474 146-251 (263)
218 KOG1130 Predicted G-alpha GTPa 96.0 0.037 8E-07 54.3 8.9 52 47-99 25-80 (639)
219 PF13525 YfiO: Outer membrane 95.9 0.58 1.2E-05 43.2 16.5 161 314-495 13-199 (203)
220 KOG0543 FKBP-type peptidyl-pro 95.9 0.069 1.5E-06 52.8 10.5 63 441-503 258-320 (397)
221 COG4235 Cytochrome c biogenesi 95.8 0.42 9.2E-06 45.6 15.0 104 369-474 153-261 (287)
222 PF12921 ATP13: Mitochondrial 95.8 0.1 2.2E-06 43.7 9.8 50 368-417 48-97 (126)
223 PF03704 BTAD: Bacterial trans 95.8 0.042 9.2E-07 47.7 7.9 68 442-509 64-136 (146)
224 PF07079 DUF1347: Protein of u 95.8 2.5 5.5E-05 42.7 34.9 385 42-445 80-530 (549)
225 PF13424 TPR_12: Tetratricopep 95.7 0.019 4.1E-07 43.6 4.8 60 410-469 7-75 (78)
226 COG5107 RNA14 Pre-mRNA 3'-end 95.6 2.9 6.3E-05 42.1 31.5 128 373-502 398-530 (660)
227 KOG1585 Protein required for f 95.6 1.5 3.3E-05 40.5 16.6 87 410-497 152-250 (308)
228 KOG4555 TPR repeat-containing 95.4 0.17 3.7E-06 41.4 9.0 90 416-505 51-146 (175)
229 KOG1538 Uncharacterized conser 95.3 0.62 1.3E-05 48.7 14.8 58 77-137 601-660 (1081)
230 KOG0550 Molecular chaperone (D 95.3 3.6 7.8E-05 41.1 20.3 57 216-274 178-237 (486)
231 PF13525 YfiO: Outer membrane 95.3 0.43 9.3E-06 44.1 13.0 54 214-267 12-71 (203)
232 PF13281 DUF4071: Domain of un 95.2 1.8 3.9E-05 43.4 17.7 97 212-308 146-261 (374)
233 KOG0543 FKBP-type peptidyl-pro 95.2 0.35 7.6E-06 48.0 12.4 138 344-503 215-355 (397)
234 COG0457 NrfG FOG: TPR repeat [ 95.2 2.6 5.6E-05 39.0 27.2 196 306-503 59-265 (291)
235 PF12921 ATP13: Mitochondrial 95.2 0.23 5.1E-06 41.5 9.8 78 372-449 2-97 (126)
236 COG3118 Thioredoxin domain-con 95.2 1 2.2E-05 43.0 14.7 121 381-504 143-266 (304)
237 KOG1920 IkappaB kinase complex 95.1 3.9 8.4E-05 46.4 21.0 157 221-434 894-1052(1265)
238 PLN03098 LPA1 LOW PSII ACCUMUL 94.9 0.17 3.7E-06 51.3 9.7 60 372-434 75-138 (453)
239 PF13512 TPR_18: Tetratricopep 94.9 0.74 1.6E-05 39.0 11.8 85 418-502 20-127 (142)
240 PF03704 BTAD: Bacterial trans 94.8 0.33 7.1E-06 42.1 10.4 70 340-410 65-138 (146)
241 COG1729 Uncharacterized protei 94.8 0.21 4.6E-06 46.9 9.4 91 410-503 144-244 (262)
242 KOG3941 Intermediate in Toll s 94.7 0.29 6.3E-06 45.8 9.8 110 324-434 52-185 (406)
243 KOG1920 IkappaB kinase complex 94.7 4.7 0.0001 45.8 20.3 51 415-465 972-1024(1265)
244 KOG1941 Acetylcholine receptor 94.6 1.3 2.9E-05 43.2 14.1 161 339-500 85-272 (518)
245 KOG2610 Uncharacterized conser 94.4 1 2.3E-05 43.4 12.9 112 319-434 116-235 (491)
246 KOG3941 Intermediate in Toll s 94.2 0.3 6.5E-06 45.7 8.8 49 36-84 64-117 (406)
247 KOG2066 Vacuolar assembly/sort 94.2 10 0.00022 41.2 24.5 23 243-265 510-532 (846)
248 PF04053 Coatomer_WDAD: Coatom 94.1 0.99 2.2E-05 46.9 13.5 134 345-504 269-403 (443)
249 PF04097 Nic96: Nup93/Nic96; 94.1 1.5 3.3E-05 48.0 15.5 69 40-110 113-188 (613)
250 COG3118 Thioredoxin domain-con 94.0 5.4 0.00012 38.2 16.5 173 325-500 122-299 (304)
251 PF10300 DUF3808: Protein of u 93.9 3.5 7.6E-05 43.6 17.3 160 340-502 191-375 (468)
252 PF13512 TPR_18: Tetratricopep 93.8 2.1 4.6E-05 36.3 12.3 114 344-474 17-133 (142)
253 PF00515 TPR_1: Tetratricopept 93.8 0.13 2.9E-06 31.4 4.0 32 441-472 2-33 (34)
254 PRK11906 transcriptional regul 93.7 3.3 7.1E-05 42.4 15.7 143 352-497 273-430 (458)
255 COG4105 ComL DNA uptake lipopr 93.6 6.4 0.00014 37.0 20.0 157 345-502 42-232 (254)
256 PF07719 TPR_2: Tetratricopept 93.4 0.22 4.8E-06 30.3 4.7 32 442-473 3-34 (34)
257 PF10300 DUF3808: Protein of u 93.4 5.1 0.00011 42.3 17.6 78 288-365 248-333 (468)
258 smart00299 CLH Clathrin heavy 93.4 4.6 9.9E-05 34.5 15.8 43 341-384 11-53 (140)
259 KOG2280 Vacuolar assembly/sort 93.3 14 0.00031 40.0 30.2 112 371-498 683-794 (829)
260 PF04053 Coatomer_WDAD: Coatom 93.2 3.5 7.5E-05 43.0 15.6 104 314-435 326-429 (443)
261 COG1729 Uncharacterized protei 93.2 1.2 2.5E-05 42.1 10.9 92 340-434 145-241 (262)
262 COG0457 NrfG FOG: TPR repeat [ 93.1 7 0.00015 36.0 25.8 161 308-472 97-268 (291)
263 PF08631 SPO22: Meiosis protei 93.0 9.7 0.00021 37.1 23.7 49 218-266 4-64 (278)
264 smart00299 CLH Clathrin heavy 92.9 5.4 0.00012 34.1 15.0 114 39-165 7-121 (140)
265 PRK11906 transcriptional regul 92.9 2.2 4.8E-05 43.6 13.0 116 387-502 273-400 (458)
266 PF10345 Cohesin_load: Cohesin 92.5 20 0.00042 39.6 27.5 185 317-501 372-604 (608)
267 PF09205 DUF1955: Domain of un 92.3 5.7 0.00012 33.0 14.3 84 318-404 68-151 (161)
268 PF04184 ST7: ST7 protein; In 92.3 3.5 7.7E-05 42.4 13.5 147 351-509 182-330 (539)
269 PRK15331 chaperone protein Sic 92.1 4.2 9.1E-05 35.5 12.0 84 348-434 48-131 (165)
270 COG4785 NlpI Lipoprotein NlpI, 91.8 10 0.00022 34.6 14.5 160 338-504 100-267 (297)
271 PF13176 TPR_7: Tetratricopept 91.6 0.33 7.1E-06 30.2 3.7 26 476-501 1-26 (36)
272 KOG4555 TPR repeat-containing 91.4 1.8 3.8E-05 35.8 8.4 87 382-471 53-146 (175)
273 KOG4234 TPR repeat-containing 91.0 0.8 1.7E-05 40.8 6.6 88 417-504 104-198 (271)
274 PF04097 Nic96: Nup93/Nic96; 90.9 18 0.00038 39.9 18.5 83 245-332 265-353 (613)
275 KOG2610 Uncharacterized conser 90.9 2.6 5.7E-05 40.7 10.4 159 349-510 115-283 (491)
276 PRK09687 putative lyase; Provi 90.8 17 0.00037 35.4 26.8 72 307-383 207-278 (280)
277 PF07035 Mic1: Colon cancer-as 90.7 7 0.00015 34.4 12.2 132 59-200 14-148 (167)
278 PF04184 ST7: ST7 protein; In 90.7 23 0.0005 36.7 18.0 17 458-474 364-380 (539)
279 COG4105 ComL DNA uptake lipopr 90.3 16 0.00035 34.4 17.6 158 317-474 45-238 (254)
280 PRK11619 lytic murein transgly 90.3 33 0.00071 37.9 30.4 115 350-467 254-373 (644)
281 KOG1941 Acetylcholine receptor 90.3 20 0.00043 35.4 16.3 161 239-399 84-273 (518)
282 PF02259 FAT: FAT domain; Int 90.0 23 0.0005 35.7 18.0 67 438-504 144-214 (352)
283 KOG2114 Vacuolar assembly/sort 89.6 33 0.00072 37.9 18.2 85 340-436 434-518 (933)
284 COG3629 DnrI DNA-binding trans 89.6 2.4 5.2E-05 40.7 9.1 75 307-381 154-236 (280)
285 PF13181 TPR_8: Tetratricopept 89.5 0.65 1.4E-05 28.2 3.7 31 442-472 3-33 (34)
286 PF13176 TPR_7: Tetratricopept 89.4 0.66 1.4E-05 28.8 3.6 28 442-469 1-28 (36)
287 COG3629 DnrI DNA-binding trans 89.3 2 4.4E-05 41.2 8.3 61 442-502 155-215 (280)
288 PF13170 DUF4003: Protein of u 89.1 19 0.00042 35.3 15.3 29 254-282 78-106 (297)
289 KOG1586 Protein required for f 88.3 21 0.00046 33.0 16.5 87 386-472 128-227 (288)
290 TIGR02561 HrpB1_HrpK type III 87.5 3.4 7.4E-05 35.2 7.6 54 451-504 21-74 (153)
291 PF09613 HrpB1_HrpK: Bacterial 87.4 3.7 8.1E-05 35.6 8.0 51 452-502 22-72 (160)
292 PRK09687 putative lyase; Provi 87.3 30 0.00065 33.7 26.9 121 339-471 144-265 (280)
293 PF07035 Mic1: Colon cancer-as 87.0 21 0.00045 31.5 15.6 134 95-266 15-148 (167)
294 PF13428 TPR_14: Tetratricopep 86.2 1.9 4.1E-05 28.2 4.5 27 42-68 4-30 (44)
295 PF02259 FAT: FAT domain; Int 86.2 40 0.00087 34.0 20.4 148 336-486 145-304 (352)
296 PF10602 RPN7: 26S proteasome 85.9 22 0.00048 31.9 12.6 94 339-434 38-139 (177)
297 PF00637 Clathrin: Region in C 85.7 1 2.2E-05 38.8 4.0 85 45-136 13-97 (143)
298 PF00515 TPR_1: Tetratricopept 85.7 1.9 4.2E-05 26.0 4.1 27 339-365 3-29 (34)
299 COG4649 Uncharacterized protei 85.7 13 0.00029 32.5 10.3 121 347-468 68-195 (221)
300 PF09613 HrpB1_HrpK: Bacterial 85.6 24 0.00051 30.8 13.3 87 382-471 20-108 (160)
301 cd00923 Cyt_c_Oxidase_Va Cytoc 85.0 6.6 0.00014 30.6 7.3 63 352-416 22-84 (103)
302 TIGR02508 type_III_yscG type I 85.0 13 0.00028 29.2 8.9 89 88-180 19-107 (115)
303 PF02284 COX5A: Cytochrome c o 84.8 8.8 0.00019 30.3 8.0 60 355-416 28-87 (108)
304 PF11207 DUF2989: Protein of u 84.5 5.5 0.00012 36.0 7.9 75 419-494 118-198 (203)
305 KOG4648 Uncharacterized conser 84.3 1.9 4.2E-05 41.7 5.2 110 380-496 105-217 (536)
306 PF07719 TPR_2: Tetratricopept 84.2 1.6 3.5E-05 26.3 3.3 28 475-502 2-29 (34)
307 PF10602 RPN7: 26S proteasome 83.7 14 0.00031 33.0 10.4 94 307-400 37-141 (177)
308 KOG1586 Protein required for f 83.5 38 0.00083 31.5 13.6 24 450-473 164-187 (288)
309 KOG1464 COP9 signalosome, subu 83.4 41 0.0009 31.8 18.0 245 202-453 21-317 (440)
310 PF07721 TPR_4: Tetratricopept 83.3 1.5 3.3E-05 24.8 2.6 24 475-498 2-25 (26)
311 cd00923 Cyt_c_Oxidase_Va Cytoc 83.2 7.7 0.00017 30.2 7.0 62 54-117 22-84 (103)
312 KOG2396 HAT (Half-A-TPR) repea 82.8 64 0.0014 33.6 34.4 89 412-500 464-556 (568)
313 PRK15180 Vi polysaccharide bio 82.8 21 0.00046 36.5 11.8 88 417-504 332-421 (831)
314 PF13431 TPR_17: Tetratricopep 82.5 1.8 4E-05 26.4 3.0 25 302-326 9-33 (34)
315 PRK12798 chemotaxis protein; R 82.5 61 0.0013 33.1 21.7 181 319-502 125-323 (421)
316 PF13374 TPR_10: Tetratricopep 82.4 2.3 4.9E-05 27.0 3.7 28 475-502 3-30 (42)
317 PF02284 COX5A: Cytochrome c o 81.9 7.9 0.00017 30.5 6.7 63 54-117 25-87 (108)
318 PF00637 Clathrin: Region in C 81.3 0.88 1.9E-05 39.2 1.7 86 79-167 12-97 (143)
319 KOG1498 26S proteasome regulat 80.7 66 0.0014 32.3 17.9 189 307-524 53-262 (439)
320 PHA02875 ankyrin repeat protei 80.4 75 0.0016 33.0 16.1 149 214-372 72-230 (413)
321 PF08631 SPO22: Meiosis protei 80.4 60 0.0013 31.6 22.9 61 339-401 86-150 (278)
322 TIGR02561 HrpB1_HrpK type III 79.8 34 0.00073 29.4 10.4 34 316-349 54-88 (153)
323 KOG0276 Vesicle coat complex C 79.7 29 0.00062 36.8 11.8 45 318-364 649-693 (794)
324 PF13181 TPR_8: Tetratricopept 79.2 4 8.6E-05 24.5 3.8 28 475-502 2-29 (34)
325 PF14853 Fis1_TPR_C: Fis1 C-te 79.1 5.3 0.00011 27.4 4.5 30 446-475 7-36 (53)
326 KOG1585 Protein required for f 79.0 57 0.0012 30.6 16.0 201 242-463 35-250 (308)
327 PF13174 TPR_6: Tetratricopept 78.9 3.9 8.5E-05 24.2 3.7 25 448-472 8-32 (33)
328 PF14853 Fis1_TPR_C: Fis1 C-te 78.9 12 0.00026 25.7 6.2 51 476-552 3-53 (53)
329 KOG3364 Membrane protein invol 78.3 25 0.00055 29.5 8.9 48 455-502 50-99 (149)
330 PF13174 TPR_6: Tetratricopept 78.0 2.8 6.1E-05 24.9 2.8 28 476-503 2-29 (33)
331 smart00028 TPR Tetratricopepti 78.0 5.1 0.00011 22.9 4.1 30 443-472 4-33 (34)
332 PF13374 TPR_10: Tetratricopep 78.0 5.5 0.00012 25.2 4.4 27 338-364 3-29 (42)
333 PF06552 TOM20_plant: Plant sp 77.8 12 0.00025 33.3 7.3 46 456-501 51-100 (186)
334 PRK10941 hypothetical protein; 77.8 12 0.00025 36.2 8.2 61 443-503 184-244 (269)
335 KOG0276 Vesicle coat complex C 77.5 40 0.00087 35.8 12.1 147 318-498 598-745 (794)
336 PF11207 DUF2989: Protein of u 77.1 28 0.0006 31.6 9.7 73 55-128 122-197 (203)
337 KOG4648 Uncharacterized conser 77.0 8.7 0.00019 37.4 6.9 86 344-440 104-198 (536)
338 COG3947 Response regulator con 76.0 9.8 0.00021 36.3 6.8 60 443-502 282-341 (361)
339 KOG1550 Extracellular protein 75.6 1.2E+02 0.0026 33.0 16.2 153 347-506 259-429 (552)
340 KOG4570 Uncharacterized conser 75.4 10 0.00023 36.5 6.9 96 202-301 59-163 (418)
341 KOG4570 Uncharacterized conser 74.7 15 0.00032 35.6 7.6 94 306-400 64-163 (418)
342 PRK15180 Vi polysaccharide bio 74.6 26 0.00056 35.9 9.7 109 360-472 313-423 (831)
343 COG2976 Uncharacterized protei 74.4 67 0.0014 29.0 14.3 113 355-472 70-191 (207)
344 PF04910 Tcf25: Transcriptiona 74.1 43 0.00094 34.0 11.6 96 407-502 39-167 (360)
345 KOG0545 Aryl-hydrocarbon recep 73.2 55 0.0012 30.7 10.6 87 416-502 186-292 (329)
346 COG4455 ImpE Protein of avirul 73.1 15 0.00033 33.5 7.0 63 411-473 4-68 (273)
347 KOG4234 TPR repeat-containing 71.6 53 0.0011 29.8 9.8 60 415-474 141-202 (271)
348 TIGR03504 FimV_Cterm FimV C-te 71.2 6.6 0.00014 25.7 3.3 27 478-504 3-29 (44)
349 KOG0403 Neoplastic transformat 70.7 1.3E+02 0.0029 30.9 15.3 71 310-384 513-586 (645)
350 TIGR02508 type_III_yscG type I 69.9 53 0.0012 26.0 9.5 61 315-378 48-108 (115)
351 PF14561 TPR_20: Tetratricopep 69.2 15 0.00032 28.6 5.5 45 460-504 8-52 (90)
352 KOG1550 Extracellular protein 68.7 1.8E+02 0.0039 31.6 21.5 247 248-503 259-538 (552)
353 PF06552 TOM20_plant: Plant sp 67.6 22 0.00048 31.5 6.7 45 456-507 96-140 (186)
354 KOG0890 Protein kinase of the 67.5 3.5E+02 0.0076 34.5 33.1 276 213-505 1426-1733(2382)
355 PRK13342 recombination factor 64.9 1.2E+02 0.0027 31.5 13.0 111 56-184 154-274 (413)
356 PF13762 MNE1: Mitochondrial s 64.9 65 0.0014 27.6 8.8 51 138-188 77-128 (145)
357 COG2909 MalT ATP-dependent tra 64.9 2.5E+02 0.0054 31.8 20.9 193 317-513 426-657 (894)
358 PRK11619 lytic murein transgly 64.5 2.3E+02 0.0051 31.4 39.8 438 49-508 43-510 (644)
359 PF13170 DUF4003: Protein of u 64.4 1.5E+02 0.0033 29.2 15.3 52 353-404 78-135 (297)
360 PF09670 Cas_Cas02710: CRISPR- 64.4 1.3E+02 0.0028 30.8 12.8 54 346-400 140-197 (379)
361 PF07163 Pex26: Pex26 protein; 63.1 53 0.0011 31.5 8.6 83 81-163 90-181 (309)
362 PRK13800 putative oxidoreducta 62.6 3.1E+02 0.0066 32.1 25.0 160 328-501 719-879 (897)
363 PHA02875 ankyrin repeat protei 62.3 2E+02 0.0043 29.8 16.9 207 48-273 8-230 (413)
364 KOG0687 26S proteasome regulat 61.9 1.7E+02 0.0036 28.9 12.8 24 410-433 106-129 (393)
365 PF10345 Cohesin_load: Cohesin 61.7 2.6E+02 0.0056 30.9 25.6 48 451-498 372-428 (608)
366 KOG4642 Chaperone-dependent E3 61.7 25 0.00054 32.7 6.1 65 436-500 39-104 (284)
367 PF09986 DUF2225: Uncharacteri 61.5 43 0.00093 31.1 7.9 63 442-504 120-195 (214)
368 smart00386 HAT HAT (Half-A-TPR 60.9 17 0.00037 21.1 3.6 29 454-482 1-29 (33)
369 KOG4077 Cytochrome c oxidase, 60.5 64 0.0014 26.7 7.5 60 355-416 67-126 (149)
370 KOG4077 Cytochrome c oxidase, 59.9 1E+02 0.0022 25.6 9.2 47 57-103 67-113 (149)
371 cd08819 CARD_MDA5_2 Caspase ac 59.7 57 0.0012 25.1 6.7 66 93-160 21-86 (88)
372 COG2976 Uncharacterized protei 59.3 1.4E+02 0.003 27.1 14.1 57 311-367 131-189 (207)
373 PF11768 DUF3312: Protein of u 58.5 99 0.0021 32.8 10.5 56 310-365 412-472 (545)
374 TIGR03504 FimV_Cterm FimV C-te 58.3 21 0.00046 23.4 3.8 24 80-103 5-28 (44)
375 KOG0376 Serine-threonine phosp 58.3 7 0.00015 40.0 2.3 94 379-475 11-107 (476)
376 KOG0890 Protein kinase of the 58.2 5.1E+02 0.011 33.2 30.4 156 79-244 1388-1552(2382)
377 KOG1258 mRNA processing protei 57.9 2.7E+02 0.0058 29.9 31.5 99 50-149 90-191 (577)
378 KOG1308 Hsp70-interacting prot 57.7 7.1 0.00015 38.1 2.1 86 421-506 127-214 (377)
379 PF13762 MNE1: Mitochondrial s 57.1 1.3E+02 0.0027 25.9 10.4 50 336-385 78-128 (145)
380 PF09477 Type_III_YscG: Bacter 57.0 1E+02 0.0022 24.8 9.6 89 86-178 18-106 (116)
381 PF14863 Alkyl_sulf_dimr: Alky 54.9 54 0.0012 28.0 6.8 63 424-489 57-119 (141)
382 COG4785 NlpI Lipoprotein NlpI, 54.2 1.8E+02 0.004 26.9 15.7 78 90-169 81-162 (297)
383 KOG4507 Uncharacterized conser 53.7 62 0.0013 34.4 8.0 113 58-170 194-313 (886)
384 PF07163 Pex26: Pex26 protein; 53.6 1.6E+02 0.0034 28.5 10.0 87 344-433 90-183 (309)
385 PF11846 DUF3366: Domain of un 53.5 54 0.0012 29.8 7.2 34 438-471 142-175 (193)
386 PF12862 Apc5: Anaphase-promot 53.4 42 0.0009 26.3 5.6 53 450-502 8-69 (94)
387 PF10366 Vps39_1: Vacuolar sor 53.4 96 0.0021 25.1 7.7 27 339-365 41-67 (108)
388 KOG2471 TPR repeat-containing 53.3 2.9E+02 0.0063 29.0 14.0 103 314-419 248-380 (696)
389 KOG3807 Predicted membrane pro 53.0 2E+02 0.0043 28.3 10.7 53 343-397 281-336 (556)
390 KOG2062 26S proteasome regulat 52.8 3.6E+02 0.0079 29.9 25.3 118 347-468 511-634 (929)
391 COG2909 MalT ATP-dependent tra 52.7 4E+02 0.0086 30.3 26.7 217 248-465 425-684 (894)
392 KOG0292 Vesicle coat complex C 51.3 28 0.0006 38.7 5.4 97 349-469 605-701 (1202)
393 PF04910 Tcf25: Transcriptiona 50.5 2.9E+02 0.0063 28.1 17.8 92 379-471 110-224 (360)
394 PF10366 Vps39_1: Vacuolar sor 50.3 90 0.002 25.2 7.1 28 239-266 40-67 (108)
395 PRK10564 maltose regulon perip 50.3 32 0.0007 33.3 5.2 44 336-379 255-299 (303)
396 PF10579 Rapsyn_N: Rapsyn N-te 50.2 50 0.0011 24.8 5.0 46 384-429 18-64 (80)
397 PF04190 DUF410: Protein of un 49.9 2.4E+02 0.0053 27.1 15.9 159 318-503 2-170 (260)
398 PF04190 DUF410: Protein of un 49.2 2.5E+02 0.0054 27.0 20.0 157 219-401 2-170 (260)
399 COG4649 Uncharacterized protei 48.6 2E+02 0.0043 25.6 15.9 118 316-434 68-193 (221)
400 PF06957 COPI_C: Coatomer (COP 47.4 53 0.0012 33.8 6.5 44 430-473 288-333 (422)
401 COG3947 Response regulator con 47.3 2.8E+02 0.0061 27.0 13.4 57 411-467 282-340 (361)
402 PF11846 DUF3366: Domain of un 47.2 75 0.0016 28.8 7.1 51 384-434 120-170 (193)
403 COG1747 Uncharacterized N-term 46.5 3.8E+02 0.0083 28.4 20.1 156 239-400 67-233 (711)
404 PF11663 Toxin_YhaV: Toxin wit 45.9 29 0.00062 29.1 3.5 31 52-84 108-138 (140)
405 PF07720 TPR_3: Tetratricopept 45.6 58 0.0013 20.2 4.1 29 444-472 5-35 (36)
406 PF11848 DUF3368: Domain of un 45.5 71 0.0015 21.3 4.9 37 148-184 10-46 (48)
407 COG4976 Predicted methyltransf 45.4 33 0.00072 31.7 4.2 57 417-473 4-62 (287)
408 KOG4279 Serine/threonine prote 45.0 4.8E+02 0.01 29.1 13.7 50 414-473 350-399 (1226)
409 PRK10564 maltose regulon perip 44.6 36 0.00078 33.0 4.6 45 138-182 254-299 (303)
410 PRK10941 hypothetical protein; 44.3 1.8E+02 0.0039 28.1 9.4 66 411-476 184-251 (269)
411 PF10579 Rapsyn_N: Rapsyn N-te 44.2 72 0.0016 24.0 5.0 46 349-394 18-65 (80)
412 PF11848 DUF3368: Domain of un 44.0 73 0.0016 21.3 4.7 33 50-82 13-45 (48)
413 PF11663 Toxin_YhaV: Toxin wit 43.7 22 0.00048 29.7 2.6 33 348-382 106-138 (140)
414 PF12862 Apc5: Anaphase-promot 43.7 91 0.002 24.3 6.1 25 446-470 47-71 (94)
415 KOG4507 Uncharacterized conser 43.2 1.8E+02 0.0038 31.2 9.4 145 269-416 567-718 (886)
416 PF08311 Mad3_BUB1_I: Mad3/BUB 42.5 1.7E+02 0.0036 24.4 7.9 42 458-499 81-124 (126)
417 COG5159 RPN6 26S proteasome re 41.9 3.3E+02 0.0072 26.3 19.8 234 146-432 9-270 (421)
418 PF04034 DUF367: Domain of unk 41.8 2E+02 0.0044 24.0 7.8 60 407-466 65-125 (127)
419 KOG2422 Uncharacterized conser 41.2 3.9E+02 0.0084 28.7 11.4 127 40-167 282-446 (665)
420 PRK09169 hypothetical protein; 40.6 9.2E+02 0.02 31.1 41.6 462 39-500 122-692 (2316)
421 COG1747 Uncharacterized N-term 40.1 4.8E+02 0.01 27.7 22.6 176 270-450 63-249 (711)
422 KOG3824 Huntingtin interacting 40.1 54 0.0012 31.7 4.9 45 452-496 128-172 (472)
423 COG4455 ImpE Protein of avirul 39.5 3.2E+02 0.0069 25.4 11.8 60 339-399 3-62 (273)
424 PF11838 ERAP1_C: ERAP1-like C 38.9 3.9E+02 0.0085 26.3 17.2 98 387-484 145-246 (324)
425 PF09477 Type_III_YscG: Bacter 38.4 2.1E+02 0.0046 23.1 9.3 58 315-375 49-106 (116)
426 KOG2063 Vacuolar assembly/sort 38.4 6.8E+02 0.015 28.9 26.6 27 240-266 506-532 (877)
427 PF09670 Cas_Cas02710: CRISPR- 38.3 4.2E+02 0.0091 27.2 11.5 60 42-103 135-198 (379)
428 TIGR02270 conserved hypothetic 38.0 4.8E+02 0.01 27.1 24.3 99 46-152 45-143 (410)
429 PF14689 SPOB_a: Sensor_kinase 37.0 61 0.0013 23.1 3.7 30 336-365 22-51 (62)
430 COG5159 RPN6 26S proteasome re 37.0 4E+02 0.0087 25.8 16.0 49 244-292 9-64 (421)
431 PF15161 Neuropep_like: Neurop 36.9 20 0.00044 24.3 1.1 16 599-615 12-27 (65)
432 COG0790 FOG: TPR repeat, SEL1 36.7 4E+02 0.0088 25.8 16.5 147 352-505 92-268 (292)
433 KOG2066 Vacuolar assembly/sort 36.7 6.5E+02 0.014 28.2 28.1 165 46-238 363-536 (846)
434 PF14689 SPOB_a: Sensor_kinase 36.2 53 0.0011 23.4 3.3 26 241-266 26-51 (62)
435 cd00280 TRFH Telomeric Repeat 36.0 2E+02 0.0044 25.8 7.4 47 388-434 85-137 (200)
436 PF04762 IKI3: IKI3 family; I 35.7 7.2E+02 0.016 29.2 14.0 30 307-336 813-844 (928)
437 PRK13800 putative oxidoreducta 35.1 7.9E+02 0.017 28.7 28.1 94 303-400 786-880 (897)
438 PF03745 DUF309: Domain of unk 34.5 1.1E+02 0.0024 21.8 4.7 48 49-96 9-61 (62)
439 PF14561 TPR_20: Tetratricopep 34.1 2.2E+02 0.0048 22.0 8.2 62 439-500 21-85 (90)
440 PF00244 14-3-3: 14-3-3 protei 33.3 4.2E+02 0.0091 25.0 12.2 162 343-505 7-200 (236)
441 KOG4521 Nuclear pore complex, 32.7 9.1E+02 0.02 28.7 14.7 18 315-332 929-946 (1480)
442 TIGR02270 conserved hypothetic 32.5 5.9E+02 0.013 26.5 23.9 171 81-263 45-216 (410)
443 PRK13342 recombination factor 32.2 6E+02 0.013 26.4 15.2 47 339-385 229-278 (413)
444 KOG2659 LisH motif-containing 32.2 4.3E+02 0.0092 24.7 9.2 16 418-433 113-128 (228)
445 COG4976 Predicted methyltransf 31.5 79 0.0017 29.4 4.3 55 450-504 5-59 (287)
446 KOG1524 WD40 repeat-containing 30.5 2.5E+02 0.0054 29.6 8.0 89 407-498 572-668 (737)
447 COG5108 RPO41 Mitochondrial DN 30.5 2.6E+02 0.0056 30.5 8.4 81 212-295 33-125 (1117)
448 PHA02537 M terminase endonucle 30.3 4.1E+02 0.009 24.9 9.0 102 351-472 97-210 (230)
449 COG5108 RPO41 Mitochondrial DN 30.2 3.2E+02 0.0068 29.9 8.9 47 342-388 33-81 (1117)
450 cd08326 CARD_CASP9 Caspase act 30.1 1.9E+02 0.004 22.2 5.6 62 94-159 19-80 (84)
451 COG2178 Predicted RNA-binding 28.5 4.5E+02 0.0098 23.9 9.4 56 310-365 33-97 (204)
452 PF02607 B12-binding_2: B12 bi 28.2 1.4E+02 0.0029 22.2 4.7 37 50-86 12-48 (79)
453 TIGR02710 CRISPR-associated pr 27.8 6.8E+02 0.015 25.6 11.7 27 346-372 139-165 (380)
454 COG4941 Predicted RNA polymera 27.7 6.3E+02 0.014 25.3 12.5 128 334-474 261-399 (415)
455 PF09454 Vps23_core: Vps23 cor 27.3 1.8E+02 0.0038 21.0 4.7 50 333-383 4-53 (65)
456 PF13929 mRNA_stabil: mRNA sta 26.9 6E+02 0.013 24.8 20.9 83 352-434 143-228 (292)
457 PF11817 Foie-gras_1: Foie gra 26.8 2.5E+02 0.0054 26.7 7.3 21 312-332 184-204 (247)
458 cd00280 TRFH Telomeric Repeat 26.6 2.2E+02 0.0048 25.6 6.1 29 447-476 118-146 (200)
459 KOG4814 Uncharacterized conser 26.6 7.3E+02 0.016 27.2 10.7 84 420-503 366-457 (872)
460 KOG0551 Hsp90 co-chaperone CNS 26.5 3E+02 0.0065 27.3 7.5 85 415-499 88-178 (390)
461 KOG2300 Uncharacterized conser 26.5 7.9E+02 0.017 26.0 29.6 154 343-498 329-509 (629)
462 PRK14700 recombination factor 25.8 6.5E+02 0.014 24.8 9.8 97 235-331 120-226 (300)
463 cd08819 CARD_MDA5_2 Caspase ac 25.8 3.2E+02 0.0068 21.2 6.4 38 219-257 48-85 (88)
464 PF10475 DUF2450: Protein of u 25.8 3.4E+02 0.0075 26.5 8.2 52 213-266 104-155 (291)
465 PRK02287 hypothetical protein; 25.5 4.8E+02 0.01 23.2 8.1 60 408-467 107-167 (171)
466 PF10255 Paf67: RNA polymerase 24.9 3.3E+02 0.0072 28.1 8.0 56 309-364 125-191 (404)
467 COG2912 Uncharacterized conser 24.6 2.5E+02 0.0055 27.0 6.6 57 446-502 187-243 (269)
468 COG0735 Fur Fe2+/Zn2+ uptake r 24.3 3.8E+02 0.0082 23.0 7.2 48 240-287 22-69 (145)
469 KOG2908 26S proteasome regulat 24.1 6.1E+02 0.013 25.4 9.0 78 307-384 76-168 (380)
470 COG0735 Fur Fe2+/Zn2+ uptake r 24.1 3E+02 0.0064 23.7 6.5 65 359-425 8-72 (145)
471 PF02847 MA3: MA3 domain; Int 24.0 2.5E+02 0.0054 22.5 6.0 22 116-137 9-30 (113)
472 PF11768 DUF3312: Protein of u 23.8 6.8E+02 0.015 26.9 10.0 56 211-266 412-472 (545)
473 PRK11639 zinc uptake transcrip 23.7 2.4E+02 0.0052 25.0 6.1 62 363-426 17-78 (169)
474 PF08311 Mad3_BUB1_I: Mad3/BUB 23.6 4.3E+02 0.0094 22.0 9.2 42 355-396 81-123 (126)
475 PF11123 DNA_Packaging_2: DNA 23.5 1.5E+02 0.0033 21.8 3.7 31 90-121 13-43 (82)
476 PF08225 Antimicrobial19: Pseu 23.5 55 0.0012 17.3 1.1 12 604-615 10-21 (23)
477 KOG0292 Vesicle coat complex C 23.4 1.2E+03 0.025 26.9 12.1 129 316-468 653-781 (1202)
478 KOG1114 Tripeptidyl peptidase 23.4 1.2E+03 0.026 27.1 12.0 55 372-426 1231-1285(1304)
479 PF14427 Pput2613-deam: Pput_2 23.3 3E+02 0.0064 22.2 5.6 55 572-626 47-101 (118)
480 smart00544 MA3 Domain in DAP-5 23.2 4E+02 0.0086 21.4 8.0 62 42-105 5-68 (113)
481 PF11817 Foie-gras_1: Foie gra 22.5 3.2E+02 0.0069 26.0 7.2 16 148-163 18-33 (247)
482 KOG1464 COP9 signalosome, subu 22.0 7.2E+02 0.016 23.9 17.6 131 235-365 23-173 (440)
483 PF12926 MOZART2: Mitotic-spin 21.9 3.8E+02 0.0082 20.7 7.0 41 193-233 29-69 (88)
484 cd08332 CARD_CASP2 Caspase act 21.8 2.9E+02 0.0062 21.4 5.4 58 95-156 24-81 (90)
485 COG2178 Predicted RNA-binding 21.6 6.2E+02 0.013 23.0 8.8 18 485-502 132-149 (204)
486 KOG3364 Membrane protein invol 21.2 5.2E+02 0.011 22.0 9.0 34 446-479 77-110 (149)
487 smart00777 Mad3_BUB1_I Mad3/BU 21.1 4.9E+02 0.011 21.7 7.7 40 459-498 82-123 (125)
488 cd07153 Fur_like Ferric uptake 21.1 2.7E+02 0.0057 22.5 5.6 44 45-88 6-49 (116)
489 PF02607 B12-binding_2: B12 bi 21.0 2.1E+02 0.0046 21.2 4.5 41 150-190 11-51 (79)
490 PRK13341 recombination factor 20.9 1.2E+03 0.027 26.3 13.2 173 54-232 169-357 (725)
491 PF11525 CopK: Copper resistan 20.8 44 0.00095 24.1 0.6 21 619-639 8-28 (73)
492 COG5191 Uncharacterized conser 20.7 2.1E+02 0.0045 28.1 5.1 75 405-479 104-181 (435)
493 PF10155 DUF2363: Uncharacteri 20.7 5.1E+02 0.011 21.7 10.7 91 143-233 21-124 (126)
494 KOG4642 Chaperone-dependent E3 20.5 7.4E+02 0.016 23.5 10.1 83 384-469 22-107 (284)
495 KOG3824 Huntingtin interacting 20.5 1.4E+02 0.003 29.1 3.9 22 453-474 163-184 (472)
496 PHA03100 ankyrin repeat protei 20.4 1E+03 0.022 25.0 14.4 51 121-174 117-170 (480)
497 KOG0508 Ankyrin repeat protein 20.2 4E+02 0.0087 27.8 7.2 68 262-330 167-236 (615)
498 PRK11639 zinc uptake transcrip 20.1 4E+02 0.0087 23.6 6.8 47 242-288 29-75 (169)
499 KOG2063 Vacuolar assembly/sort 20.0 1.4E+03 0.03 26.5 16.9 18 249-266 695-712 (877)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.3e-123 Score=1022.56 Aligned_cols=608 Identities=39% Similarity=0.722 Sum_probs=598.7
Q ss_pred CCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHH
Q 045672 36 TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHG-VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114 (643)
Q Consensus 36 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 114 (643)
.++.++|+++|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|.+.++++.|.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3466799999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH--
Q 045672 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR-- 192 (643)
Q Consensus 115 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-- 192 (643)
|+.+|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++++|+..+...
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred -HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 045672 193 -QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271 (643)
Q Consensus 193 -~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 271 (643)
++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCChhHhHHHHHHHHhh--cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 045672 272 DQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349 (643)
Q Consensus 272 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 349 (643)
|..||+.++.+|++.|.++.|+++|..+.+ +.++..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 999999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 045672 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429 (643)
Q Consensus 350 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 429 (643)
+|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|+++|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999878999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCcCC
Q 045672 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEP 509 (643)
Q Consensus 430 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 509 (643)
++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|+.+.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCcccccccchhhhhhhhhhhhHHHHHHHhhccCC
Q 045672 510 GCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589 (643)
Q Consensus 510 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 589 (643)
|+||+++++.+|.|.+||..||+..+|+..+.++..+|++.||.||+.+++|++++++|+..+.+||||||++|||+++|
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~ 643 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTS 643 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeccccccchhhHHHHHhhhcCeeEEEeCCCcccccCCcccCCCCCC
Q 045672 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643 (643)
Q Consensus 590 ~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~~s~~~~w 643 (643)
+|.||||+||||+|+|||+|+|+||++.+|+|||||.+|||||++|+|||+|||
T Consensus 644 ~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 644 EWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8e-120 Score=1022.37 Aligned_cols=606 Identities=38% Similarity=0.671 Sum_probs=596.5
Q ss_pred cCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHH
Q 045672 33 NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112 (643)
Q Consensus 33 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 112 (643)
.|+.||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+|
T Consensus 247 ~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~ 326 (857)
T PLN03077 247 RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326 (857)
T ss_pred cCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH
Q 045672 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192 (643)
Q Consensus 113 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 192 (643)
|+|+.+|+++|++++|.++|++|.+||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ---HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 045672 193 ---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269 (643)
Q Consensus 193 ---~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 269 (643)
++|+.+.+.|+.|+..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. ++
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986 59
Q ss_pred CCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh--cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 045672 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347 (643)
Q Consensus 270 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 347 (643)
+||..||+.++.+|++.|+++.++++|..+.+ +.++..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~ 564 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGY 564 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHH
Confidence 99999999999999999999999999999999 8999999999999999999999999999999 99999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 427 (643)
+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|+|+|++++|
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999997789999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCc
Q 045672 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507 (643)
Q Consensus 428 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 507 (643)
.+++++|+++||..+|++|+++|+.+|+.+.|+.+.+++++++|+++..|..|+++|+..|+|++|.++++.|+++|++|
T Consensus 645 ~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 645 YNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCcccccccchhhhhhhhhhhhHHHHHHHhhcc
Q 045672 508 EPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587 (643)
Q Consensus 508 ~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 587 (643)
+||+|||++++.+|.|.++|.+||+.++||..|.++..+|++.||.||+..++ ++++++|+..+++||||||++|||++
T Consensus 725 ~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~ 803 (857)
T PLN03077 725 DPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLIN 803 (857)
T ss_pred CCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999888 55788999999999999999999999
Q ss_pred CCCCCcEEEEeccccccchhhHHHHHhhhcCeeEEEeCCCcccccCCcccCCCC
Q 045672 588 LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641 (643)
Q Consensus 588 ~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~~s~~~ 641 (643)
+|+|.||||+||||+|+|||+++|+||++.+|+|||||.+|||||++|+|||+|
T Consensus 804 ~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 804 TVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.7e-75 Score=655.10 Aligned_cols=585 Identities=28% Similarity=0.406 Sum_probs=516.0
Q ss_pred cCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHH
Q 045672 33 NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112 (643)
Q Consensus 33 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 112 (643)
.|+.||+++||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..++++.+.++|..+.+.|+.||..++
T Consensus 146 ~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (857)
T PLN03077 146 KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225 (857)
T ss_pred cCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH
Q 045672 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192 (643)
Q Consensus 113 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 192 (643)
|+||.+|+++|++++|.++|++|+++|.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.++.+
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ---HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 045672 193 ---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269 (643)
Q Consensus 193 ---~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 269 (643)
++|..+.+.|+.||..+||+|+.+|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|+
T Consensus 306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh--cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 045672 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347 (643)
Q Consensus 270 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 347 (643)
.||..||+.++.+|++.|+++.|.++|+.+.+ ..++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999 8899999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 427 (643)
+++|+.++|+++|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+. |+.++..++++|+++|+++|++++|
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHH
Confidence 999999999999999986 59999999999999999999999999999999985 9999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHccCChhHHHHHHHHHH-hCCC
Q 045672 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD-PQDPGTYILLSNIYANSQKWDEVAEVRKTMR-ARGI 505 (643)
Q Consensus 428 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~ 505 (643)
.++|+++ .||..+|++++.+|.++|+.++|+++|++|.+.+ .+|..+|..++.+|++.|++++|.++|+.|. +.|+
T Consensus 544 ~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 544 WNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 9999999 7999999999999999999999999999999854 3366799999999999999999999999999 6788
Q ss_pred CcCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCcccccccchhhhhhhhhhhhHHHH-HHHh
Q 045672 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLA-IVFG 584 (643)
Q Consensus 506 ~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~la-~~~~ 584 (643)
.|+..... ..+..|... +..+ +..+.+++++..||...|..-+..+...+.+. -.|..+ ..+.
T Consensus 622 ~P~~~~y~----~lv~~l~r~----G~~~-------eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e-~~e~~a~~l~~ 685 (857)
T PLN03077 622 TPNLKHYA----CVVDLLGRA----GKLT-------EAYNFINKMPITPDPAVWGALLNACRIHRHVE-LGELAAQHIFE 685 (857)
T ss_pred CCchHHHH----HHHHHHHhC----CCHH-------HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHh
Confidence 77642110 011111111 1233 33344455678999876655444443222211 112222 2244
Q ss_pred hccCCCCCcEEEEeccccccchhhHHHHHhhhcCeeE--------EEeCCCcccccCCcccC
Q 045672 585 LMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTI--------VIRDPIRYHHFQDGNCS 638 (643)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~~--------~~~~~~~~h~~~~g~~s 638 (643)
+.+...+..+.+..-+...|+..++.+....|..+.+ |.- .+..|-|..|.-|
T Consensus 686 l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~-~~~~~~f~~~d~~ 746 (857)
T PLN03077 686 LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV-KGKVHAFLTDDES 746 (857)
T ss_pred hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE-CCEEEEEecCCCC
Confidence 5555555554444556778999999999988876633 221 2467778666544
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-63 Score=553.67 Aligned_cols=467 Identities=18% Similarity=0.236 Sum_probs=432.0
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 045672 37 RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116 (643)
Q Consensus 37 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 116 (643)
++...++.++.+|.+.|..++|+.+|+.|.. ||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI 479 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI 479 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4555666777888899999999999988873 899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChhHHHHHHccCC----CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH
Q 045672 117 NMHVKFSLLEEAQVLFDQMP----ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192 (643)
Q Consensus 117 ~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 192 (643)
.+|+++|++++|.++|++|. .||..+|++||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++
T Consensus 480 ~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~d 559 (1060)
T PLN03218 480 STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998 48999999999999999999999999999999999999999999999999999988
Q ss_pred ---HHHHHHHH--hCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC----CCcchHHHHHHHHHhCCChhHHHHHHHH
Q 045672 193 ---QLHCGIIK--VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT----RDLVVWNSIIGGFAQNSDVDEALNLYKR 263 (643)
Q Consensus 193 ---~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~ 263 (643)
+++..|.+ .|+.||..+|++||.+|+++|++++|.++|++|.+ ++..+||++|.+|++.|++++|+++|++
T Consensus 560 eA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~e 639 (1060)
T PLN03218 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD 639 (1060)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 78888876 67999999999999999999999999999999976 4669999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh--cCCchhHHhHHHHHHHhcCCHHHHHHHHhhc----CCCCh
Q 045672 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRM----IQKDV 337 (643)
Q Consensus 264 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m----~~~~~ 337 (643)
|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+ ..|+..+|++||++|+++|++++|.++|++| ..||+
T Consensus 640 M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999998 8999999999999999999999999999999 46899
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 417 (643)
.+||+||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|..|.+. |+.||..+|++++++
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999985 999999999999976
Q ss_pred HH----hcC-------------------CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cC
Q 045672 418 LG----RAG-------------------KLQEAVKLIHEM---PYEPDAVTWRALLGACKVHRNTDLAICAAKKILN-LD 470 (643)
Q Consensus 418 ~~----~~g-------------------~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~ 470 (643)
+. +++ ..++|..+|++| ++.||..||+.++.++...+..+.+..+++.+.. -.
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~ 878 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISAD 878 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCC
Confidence 43 222 246799999999 7889999999999888888889999888887654 34
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCcCCc
Q 045672 471 PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510 (643)
Q Consensus 471 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 510 (643)
+++..+|..|++.+.+. .++|..++++|...|+.|+..
T Consensus 879 ~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 879 SQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 55778999999988432 368999999999999987764
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.6e-61 Score=535.02 Aligned_cols=505 Identities=17% Similarity=0.274 Sum_probs=457.7
Q ss_pred CCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHH
Q 045672 34 TITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGV-RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112 (643)
Q Consensus 34 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 112 (643)
.+.+|...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|.+++|..++..|. .||..+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Ty 440 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTF 440 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHH
Confidence 3456788899999999999999999999999999985 5688888999999999999999999999885 3999999
Q ss_pred HHHHHHHHcCCChhHHHHHHccCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhch
Q 045672 113 NILLNMHVKFSLLEEAQVLFDQMPE----RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188 (643)
Q Consensus 113 ~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 188 (643)
+.|+.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999975 899999999999999999999999999999999999999999999999999
Q ss_pred hhHH---HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC------CCCcchHHHHHHHHHhCCChhHHHH
Q 045672 189 IILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP------TRDLVVWNSIIGGFAQNSDVDEALN 259 (643)
Q Consensus 189 ~~~~---~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g~~~~A~~ 259 (643)
|+.+ +++..|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||.++|+++|.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 9998 789999999999999999999999999999999999999995 4789999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh--cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC----
Q 045672 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI---- 333 (643)
Q Consensus 260 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---- 333 (643)
+|++|.+.|+.|+..+|+.++.+|++.|++++|..+|..|.+ +.||..+|++|+++|++.|++++|.++|+.|.
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999998 89999999999999999999999999999995
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 045672 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413 (643)
Q Consensus 334 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 413 (643)
.+|..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+. |+.||..+|++
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~s 759 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSI 759 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999985 99999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHH
Q 045672 414 MIDLLGRAGKLQEAVKLIHEM---PYEPDAVTWRALLGACKV-----------------------HRNTDLAICAAKKIL 467 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~-----------------------~g~~~~a~~~~~~~~ 467 (643)
++.+|++.|++++|.+++++| ++.||..+|+++++.|.+ .+..+.|..+|++|+
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 999999999999999999999 788999999999977643 123477999999999
Q ss_pred hcC-CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHH
Q 045672 468 NLD-PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546 (643)
Q Consensus 468 ~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~ 546 (643)
+.+ .+|..+|..++..+...+.++.+..+++.|...+..+..... +..++++. . + ..+ ...++++
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y----~~Li~g~~--~--~--~~~----A~~l~~e 905 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNL----STLVDGFG--E--Y--DPR----AFSLLEE 905 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhh----HHHHHhhc--c--C--hHH----HHHHHHH
Confidence 866 446789999998888999999999999888766654332211 22233331 1 1 122 3578999
Q ss_pred HHhCCcccCCc
Q 045672 547 LVGVGYAPDTN 557 (643)
Q Consensus 547 ~~~~g~~~d~~ 557 (643)
|.+.|+.|+..
T Consensus 906 m~~~Gi~p~~~ 916 (1060)
T PLN03218 906 AASLGVVPSVS 916 (1060)
T ss_pred HHHcCCCCCcc
Confidence 99999999875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.8e-57 Score=499.06 Aligned_cols=481 Identities=24% Similarity=0.376 Sum_probs=415.8
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHhchhhHH---HHHHHHHHhCCCCchhHHHHH
Q 045672 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSAL 213 (643)
Q Consensus 138 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~---~~~~~~~~~g~~~~~~~~~~l 213 (643)
++..+|+.+|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++.+ ++|..+.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 577899999999999999999999999998764 7899999999999999988886 999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHH
Q 045672 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293 (643)
Q Consensus 214 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 293 (643)
+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh--cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045672 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371 (643)
Q Consensus 294 ~i~~~~~~--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 371 (643)
++|..+.+ +.++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999998 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 045672 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451 (643)
Q Consensus 372 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 451 (643)
..||+.++.+|++.|++++|.+++..|.+. |+.|+..+|++|+++|+++|++++|.++|++|. +||..+|++||.+|.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHH
Confidence 999999999999999999999999999995 999999999999999999999999999999996 589999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHccCChhHHHHHHHHHHh-CCCCcCCceeEEEECCEEEEEEeCCCC
Q 045672 452 VHRNTDLAICAAKKILNLD-PQDPGTYILLSNIYANSQKWDEVAEVRKTMRA-RGITKEPGCSWIEVNKQIHAFNVADSS 529 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~s~~~~~~~~~~f~~~~~~ 529 (643)
++|+.++|+++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|.+ .|+.|+.... +..+..|..
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y----~~li~~l~r---- 474 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY----ACMIELLGR---- 474 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch----HhHHHHHHh----
Confidence 9999999999999998855 33678999999999999999999999999986 5887654221 111111221
Q ss_pred CcchHHHHHHHHHHHHHHHhCCcccCCcccccccchhhhhhhh---hhhhHHHHHHHhhccCCCCCcEEEEeccccccch
Q 045672 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSI---QYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606 (643)
Q Consensus 530 ~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~~~~~~~~~l~~c~~~ 606 (643)
.+..+++ .+.+++.+..||..++..-+..+.+.+.+ ....++ .+++.+...+..+.+++-+..+|+.
T Consensus 475 ~G~~~eA-------~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~---l~~~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 475 EGLLDEA-------YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK---LYGMGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred cCCHHHH-------HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH---HhCCCCCCCcchHHHHHHHHhCCCH
Confidence 2234444 33455678999988766555554433322 111222 2455444445555667788999999
Q ss_pred hhHHHHHhhhcCeeEEEe-------CCCcccccCCcccC
Q 045672 607 HTFAKLTAKMENQTIVIR-------DPIRYHHFQDGNCS 638 (643)
Q Consensus 607 ~~~~~~~s~~~~~~~~~~-------~~~~~h~~~~g~~s 638 (643)
.+|.+++.+|..+++... -.+..|.|-.|..+
T Consensus 545 ~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~ 583 (697)
T PLN03081 545 AEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL 583 (697)
T ss_pred HHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCC
Confidence 999999999988865321 12455777655433
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=5.2e-27 Score=271.18 Aligned_cols=458 Identities=13% Similarity=0.053 Sum_probs=340.8
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045672 38 NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117 (643)
Q Consensus 38 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (643)
+...|..+...+...|++++|++.|+.+.+.. +.+......++..+.+.|++++|..+++.+.+.. +.+..++..+..
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 473 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGA 473 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHH
Confidence 45567778888888888888888888887654 2234455566777788888888888888887753 456677888888
Q ss_pred HHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH--
Q 045672 118 MHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR-- 192 (643)
Q Consensus 118 ~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-- 192 (643)
.|...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+...|+.+
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888887654 345567777888888888888888888887653 234556666666666666666
Q ss_pred -HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 045672 193 -QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268 (643)
Q Consensus 193 -~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 268 (643)
..+..+.+.+ +.+...+..++..|.+.|++++|..+++++.+ .+...|..+...|...|++++|+..|+++.+..
T Consensus 553 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 553 VAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3344443332 34556677788888888888888888887754 355678888888888888888888888887653
Q ss_pred CCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHH
Q 045672 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMI 344 (643)
Q Consensus 269 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li 344 (643)
+.+...+..+..++...|+++.|..++..+.+ .+.+...+..++..+...|++++|..+++.+.+ .+...|..+.
T Consensus 632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 710 (899)
T TIGR02917 632 -PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEG 710 (899)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHH
Confidence 33556677777778888888888888888887 555677778888888888888888888887743 2455677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 045672 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424 (643)
Q Consensus 345 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 424 (643)
..+...|++++|++.|+++... .|+..++..+..++.+.|+.++|.+.++.+.+ ..+.+...+..+...|.+.|++
T Consensus 711 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 711 DLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCH
Confidence 7888888888888888888774 35556677777788888888888888888776 3455677777888888888888
Q ss_pred HHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 425 QEAVKLIHEM-P-YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 425 ~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
++|.+.|+++ . .+++..+++.+...+...|+ ++|+..++++++..|+++..+..++.+|...|++++|.++++++.+
T Consensus 787 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 787 DKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888776 2 23456677777777777777 6788888888888888777777888888888888888888888877
Q ss_pred CCC
Q 045672 503 RGI 505 (643)
Q Consensus 503 ~g~ 505 (643)
.+.
T Consensus 866 ~~~ 868 (899)
T TIGR02917 866 IAP 868 (899)
T ss_pred hCC
Confidence 653
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.8e-26 Score=266.69 Aligned_cols=459 Identities=13% Similarity=0.045 Sum_probs=393.4
Q ss_pred CCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHH
Q 045672 36 TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNIL 115 (643)
Q Consensus 36 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 115 (643)
..+...|+.+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++|...+..+.+.... .......+
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 437 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLL 437 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHH
Confidence 3456789999999999999999999999998764 446777888888999999999999999999887543 34566778
Q ss_pred HHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH
Q 045672 116 LNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192 (643)
Q Consensus 116 i~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 192 (643)
+..|.+.|++++|..+++++.. .+..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+.+
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 8899999999999999998875 467789999999999999999999999998753 223445666666777777776
Q ss_pred ---HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 045672 193 ---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266 (643)
Q Consensus 193 ---~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (643)
..+..+.+.. +.+..++..+...|.+.|+.++|...|+++.. .+...+..++..|...|++++|+++++++.+
T Consensus 517 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 517 DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555543 45678889999999999999999999998754 3556788899999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHH
Q 045672 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWST 342 (643)
Q Consensus 267 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~ 342 (643)
.. +.+..++..+..++...|+++.|...+..+.+ .+.+...+..+...|.+.|++++|...|+++.+ .+..+|..
T Consensus 596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIG 674 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 53 55778899999999999999999999999998 666778889999999999999999999998843 35778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 422 (643)
++..+...|++++|.++++.+...+ +++...+..+...+...|++++|...|+.+.+. .|+...+..++..+.+.|
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCC
Confidence 9999999999999999999998875 456777888888999999999999999999873 466678888999999999
Q ss_pred CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHH
Q 045672 423 KLQEAVKLIHEM-P-YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTM 500 (643)
Q Consensus 423 ~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 500 (643)
++++|.+.++++ . .+.+...+..+...|...|+.++|...++++++..|+++.++..++.+|...|+ ++|..+++++
T Consensus 751 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 999999999887 2 334677888888899999999999999999999999999999999999999999 8899999998
Q ss_pred HhCC
Q 045672 501 RARG 504 (643)
Q Consensus 501 ~~~g 504 (643)
.+..
T Consensus 830 ~~~~ 833 (899)
T TIGR02917 830 LKLA 833 (899)
T ss_pred HhhC
Confidence 8753
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=1.5e-30 Score=212.26 Aligned_cols=106 Identities=56% Similarity=1.032 Sum_probs=96.6
Q ss_pred ceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCcccccccchhhh--------hhhhhhhhHHHHH
Q 045672 510 GCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQK--------EDSIQYHSEKLAI 581 (643)
Q Consensus 510 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~--------~~~~~~~~~~la~ 581 (643)
||||+++ |.|.+||.+||+. ++..++...||.|++..+.|+++++++ +..+..||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899876 9999999999987 456677888999999999998877665 5688999999999
Q ss_pred HHhhccCCCCCcEEEEecc-ccccchhhHHHHHhhhcCeeEEEeCCCcccccC
Q 045672 582 VFGLMSLTQGKTIRIRKNL-RICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQ 633 (643)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l-~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 633 (643)
+|||+++ +|+||+ |+|+|||+|+|+||++.+|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 889999 999999999999999999999999999999996
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=3.2e-19 Score=207.68 Aligned_cols=456 Identities=14% Similarity=0.063 Sum_probs=273.3
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhH-----------------HHHHHHHHccCCHHHHHHHHHHH
Q 045672 38 NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTY-----------------AELIKCCLARHAVEEAKLVHNHV 100 (643)
Q Consensus 38 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-----------------~~ll~~~~~~~~~~~a~~~~~~~ 100 (643)
|...+..++..+.+.|+.++|.+.+++..+.. |+...+ ..+.+.+...|++++|.+.++.+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 56667888888889999999999999988764 333222 22334567889999999999998
Q ss_pred HHcCCCCchhH-HHHHHHHHHcCCChhHHHHHHccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC---
Q 045672 101 LSGGFEPETFL-VNILLNMHVKFSLLEEAQVLFDQMPE--R-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP--- 173 (643)
Q Consensus 101 ~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--- 173 (643)
++.+. |+... ...........|+.++|++.|+++.+ | +...+..+...+...|+.++|++.++++.......
T Consensus 139 l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 139 FNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred ccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHH
Confidence 87643 33221 11112222345889999999988876 3 45578888888999999999999999886532100
Q ss_pred -------------Chh---hHHHHHHHHhchhhHH---HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 045672 174 -------------NMF---TYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234 (643)
Q Consensus 174 -------------~~~---t~~~ll~a~~~~~~~~---~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 234 (643)
+.. .+...+..+....... .......+....|+.. ...+...+...|++++|...|++..
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 000 0111111111111111 0111111111112111 1123345556666666666666654
Q ss_pred C---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHH------------HHHHHHHhcCChhHhHHHHHHH
Q 045672 235 T---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD-QSTL------------TSVLRACTGLALLELGTQVHVH 298 (643)
Q Consensus 235 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~------------~~ll~a~~~~~~~~~a~~i~~~ 298 (643)
+ .+...+..+...|.+.|++++|+..|++..+...... ...+ ......+...|++++|...++.
T Consensus 297 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 297 RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3 2445666666666666666666666666655322111 1111 1112334556666666666666
Q ss_pred Hhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhH----------------------------------
Q 045672 299 VLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--K-DVISW---------------------------------- 340 (643)
Q Consensus 299 ~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~---------------------------------- 340 (643)
+.+ .+.+...+..|...|...|++++|.+.|++..+ | +...+
T Consensus 377 Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 377 ARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 666 444445555666666666666666666666532 1 11111
Q ss_pred --------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH
Q 045672 341 --------STMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411 (643)
Q Consensus 341 --------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 411 (643)
..+...+...|++++|++.|++.++. .|+ ...+..+...+.+.|++++|...++.+.+.. +.+...+
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~ 532 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQV 532 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHH
Confidence 22334455678888888888888774 454 4556667777888888888888888876531 1122222
Q ss_pred HH--------------------------------------------HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 045672 412 SC--------------------------------------------MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447 (643)
Q Consensus 412 ~~--------------------------------------------li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 447 (643)
.. +.+.+...|+.++|.++++.-| ++...+..+.
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La 610 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP--PSTRIDLTLA 610 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHHHH
Confidence 21 2334455566666666655332 2344556666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
..+...|++++|+..++++++.+|+++.++..++.+|...|++++|.+.++...+.
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 77888888888888888888888888888888888888888888888888876643
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=8.6e-20 Score=180.35 Aligned_cols=439 Identities=15% Similarity=0.152 Sum_probs=346.7
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 045672 42 LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK 121 (643)
Q Consensus 42 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 121 (643)
-..+.....+.|++++|.+.-...-+.+ +.+......+-..+.+..+++...+--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4456667778999999998766554443 3344444444455666667776666555555543 2345789999999999
Q ss_pred CCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhchhhHHHH
Q 045672 122 FSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF----TYSAVLRACDSLIILRQL 194 (643)
Q Consensus 122 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~~ 194 (643)
.|++++|+.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++. .|+.. ....++++-++......-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999998876 35689999999999999999999999998864 56543 344455555554444422
Q ss_pred HHHHHHhCCCCc-hhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCc---chHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 045672 195 HCGIIKVGFESD-VFVRSALIDIYAKLGELRNAECVFNEMPTRDL---VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270 (643)
Q Consensus 195 ~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 270 (643)
+...++ ..|. ..+|+.|...+-..|++..|...|++...-|+ .+|-.|...|...+.+++|+..|.+.... +
T Consensus 207 YlkAi~--~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--r 282 (966)
T KOG4626|consen 207 YLKAIE--TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--R 282 (966)
T ss_pred HHHHHh--hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--C
Confidence 222222 2333 46688888889999999999999999876443 57888999999999999999999887763 5
Q ss_pred CC-HHHHHHHHHHHhcCChhHhHHHHHHHHhhcCC-chhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHH
Q 045672 271 AD-QSTLTSVLRACTGLALLELGTQVHVHVLKYDH-DLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMIS 345 (643)
Q Consensus 271 p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~ 345 (643)
|+ ...+..+...|-..|.++.|..-+++++...| -...|+.|..++-..|++.+|...+.+... ....+.+.+..
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 64 56777777788899999999999999999444 467899999999999999999999988743 24567888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCC
Q 045672 346 GLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGRAGK 423 (643)
Q Consensus 346 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 423 (643)
.|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|...+++..+ +.|+ ...|+.+...|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999887 5676 56788899999999999999999998875 6786 4689999999999999
Q ss_pred HHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHH
Q 045672 424 LQEAVKLIHEM-PYEPDA-VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493 (643)
Q Consensus 424 ~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 493 (643)
.+.|...+.+. .+.|.- ...+.|.+.+...|+..+|+..|+.+++++|+.+.+|..++.+..-..+|.+=
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 99999999887 667754 47788889999999999999999999999999999999998888766666653
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=8.5e-19 Score=204.14 Aligned_cols=450 Identities=10% Similarity=0.002 Sum_probs=300.5
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 045672 42 LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK 121 (643)
Q Consensus 42 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 121 (643)
+...+..+-.....+.|...+..+......|+... .....++...|++++|...++..++..+ .+...+..|...|.+
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~ 315 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQ 315 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 33333333333334455555555443222222111 1223344455666666666666665432 245555666666666
Q ss_pred CCChhHHHHHHccCCC--CCc---chHHHH------------HHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 045672 122 FSLLEEAQVLFDQMPE--RNV---VSWTTM------------ISAYCDAKMNDKALELLIFMLREGVRPN-MFTYSAVLR 183 (643)
Q Consensus 122 ~g~~~~A~~~f~~m~~--~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 183 (643)
.|++++|+..|++..+ |+. ..|..+ ...+.+.|++++|++.|++..+. .|+ ...+..+-.
T Consensus 316 ~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~ 393 (1157)
T PRK11447 316 QGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGD 393 (1157)
T ss_pred cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 6666666666665543 211 112111 23445566666666666666654 232 223333334
Q ss_pred HHhchhhHH---HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC------------cchHHHHHHHH
Q 045672 184 ACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD------------LVVWNSIIGGF 248 (643)
Q Consensus 184 a~~~~~~~~---~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~ 248 (643)
.+...|+.+ +.+..+++.. +.+...+..+...|. .++.++|..+++.+.... ...+..+...+
T Consensus 394 ~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~ 471 (1157)
T PRK11447 394 VAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL 471 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 444444444 3333333322 223444555666664 457889998888775421 22355667788
Q ss_pred HhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHH
Q 045672 249 AQNSDVDEALNLYKRMKRAGFAA-DQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAM 326 (643)
Q Consensus 249 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~ 326 (643)
...|++++|++.|++..+. .| +...+..+...+...|++++|...++.+.+ .+.+...+..+...+.+.|+.++|.
T Consensus 472 ~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 8999999999999999885 34 456677788889999999999999999988 5556666666667778899999999
Q ss_pred HHHhhcCCCC----h---------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 045672 327 SVFSRMIQKD----V---------ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393 (643)
Q Consensus 327 ~~~~~m~~~~----~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 393 (643)
..++.+.... . ..+..+...+...|+.++|+.+++. .+++...+..+...+.+.|+.++|+.
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 9999885421 1 1123456678899999999999882 24455667778888999999999999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP-YEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
.|+.+.+. -+.+...+..++..|...|++++|.+.++... ..|+ ...+..+..++...|++++|..+++++++..|
T Consensus 625 ~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 625 AYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 99999873 34467889999999999999999999999873 3444 55677778888999999999999999998876
Q ss_pred CCc------chHHHHHHHHHccCChhHHHHHHHHHHh-CCCC
Q 045672 472 QDP------GTYILLSNIYANSQKWDEVAEVRKTMRA-RGIT 506 (643)
Q Consensus 472 ~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~ 506 (643)
+++ ..+..++.++...|++++|.+.+++... .|+.
T Consensus 703 ~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 703 SQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred cCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 544 3566779999999999999999998863 3453
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=6.3e-20 Score=190.44 Aligned_cols=299 Identities=15% Similarity=0.085 Sum_probs=219.1
Q ss_pred HHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHcC
Q 045672 46 FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE---TFLVNILLNMHVKF 122 (643)
Q Consensus 46 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 122 (643)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 345567899999999999999874 44667889999999999999999999999988643222 25678889999999
Q ss_pred CChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHH
Q 045672 123 SLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGII 199 (643)
Q Consensus 123 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~ 199 (643)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++++.+.+..++....
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------------------- 179 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI--------------------- 179 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH---------------------
Confidence 999999999999976 46678999999999999999999999999876432221100
Q ss_pred HhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 045672 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT--R-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276 (643)
Q Consensus 200 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 276 (643)
...+..+...|.+.|++++|.+.|+++.+ | +...+..+...|.+.|++++|.++|+++.+.+......++
T Consensus 180 -------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 180 -------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred -------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH
Confidence 11234577788899999999999998764 2 4557788889999999999999999999875432224456
Q ss_pred HHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHh---cC
Q 045672 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI--QKDVISWSTMISGLAQ---NG 351 (643)
Q Consensus 277 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~---~g 351 (643)
..+..++...|+.+.|...+..+.+..|+...+..++..|.+.|++++|..+|+++. .|+..+++.++..+.. .|
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEG 332 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCc
Confidence 666666667777777777666666644454455666666666666666666666553 2555566666655543 44
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH
Q 045672 352 YSQEALKLFESMKVSRIKPNYI 373 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p~~~ 373 (643)
+.++++.++++|.+.+++|++.
T Consensus 333 ~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 333 RAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred cchhHHHHHHHHHHHHHhCCCC
Confidence 6666666666666655555544
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=4.2e-18 Score=186.27 Aligned_cols=417 Identities=11% Similarity=0.002 Sum_probs=287.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhC
Q 045672 77 YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDA 153 (643)
Q Consensus 77 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 153 (643)
+......+.+.|++++|...|+..++. .|+...|..+..+|.+.|++++|...++...+ .+...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 344556677788888888888888874 45667788888888888888888888887765 2445788888888888
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhC
Q 045672 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233 (643)
Q Consensus 154 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 233 (643)
|++++|+..|......+-..+ .....++.............. ..+. .+++...+..+.. |....+...+..-++..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~a~~~~~~-~l~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRN-EQSAQAVERLLKKFAESKAKE-ILET-KPENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHHHHHHHH-HHhc-CCCCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 888888888876654321111 111111111100000001111 1111 1122222222222 22222222222212221
Q ss_pred CCCCc---chHHHHHHHH---HhCCChhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHhcCChhHhHHHHHHHHhhc-CC
Q 045672 234 PTRDL---VVWNSIIGGF---AQNSDVDEALNLYKRMKRAG-FAA-DQSTLTSVLRACTGLALLELGTQVHVHVLKY-DH 304 (643)
Q Consensus 234 ~~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~ 304 (643)
.+-+. ..+..+...+ ...+++++|++.|++..+.+ ..| +...+..+...+...|+++.|...+..+.+. +.
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 363 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR 363 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 11111 1111111111 23478999999999988764 234 3456677777778899999999999999984 44
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 045672 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLF 380 (643)
Q Consensus 305 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 380 (643)
....+..+...|...|++++|...|+...+ .+...|..+...+...|++++|+..|++.+.. .|+ ...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHH
Confidence 466888899999999999999999998743 35678999999999999999999999999875 454 566777888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHH
Q 045672 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDA-------V-TWRALLGACK 451 (643)
Q Consensus 381 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-------~-~~~~ll~~~~ 451 (643)
.+.+.|++++|...|+...+. .+.+...++.+...|...|++++|.+.|++. ...|+. . .++..+..+.
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 889999999999999999873 3445778999999999999999999999886 333421 1 1222222344
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
..|++++|+.+++++++++|++..++..++.+|.+.|++++|.+.+++..+.
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5699999999999999999999889999999999999999999999998754
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=1.4e-16 Score=177.59 Aligned_cols=449 Identities=10% Similarity=-0.003 Sum_probs=273.8
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH-
Q 045672 40 SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM- 118 (643)
Q Consensus 40 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~- 118 (643)
.++..+...|.+.|++++|+..+++..+. .|+...|..++..+ ++.++|..+++++++..+ .+..++..+...
T Consensus 79 ~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P-~n~~~~~~la~~~ 152 (987)
T PRK09782 79 PLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLAQQK-ACDAVPTLRCRSE 152 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHHhCC-CChhHHHHHHHHh
Confidence 34455555666666666666666655543 23333333322222 555556666666655432 233344444443
Q ss_pred -------HHcCCChhHHHHHHccCCCCC--cchHHH-HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc-
Q 045672 119 -------HVKFSLLEEAQVLFDQMPERN--VVSWTT-MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS- 187 (643)
Q Consensus 119 -------~~~~g~~~~A~~~f~~m~~~~--~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~- 187 (643)
|.+.+...++++ .+...++ ...... +...|.+.|++++|++++.++.+.+... ..-...+-.++..
T Consensus 153 ~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~-~~~~~~L~~ay~q~ 229 (987)
T PRK09782 153 VGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLS-AAERRQWFDVLLAG 229 (987)
T ss_pred hccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHh
Confidence 555444444444 2222232 322333 3778888899999999999998875332 2223333334444
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CCcchH---------------------
Q 045672 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT-----RDLVVW--------------------- 241 (643)
Q Consensus 188 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~--------------------- 241 (643)
.+. +.+... .+..+..+..+..+++..|.+.|+.++|.+++.+++. ++..+|
T Consensus 230 l~~-~~a~al-~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~ 307 (987)
T PRK09782 230 QLD-DRLLAL-QSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQ 307 (987)
T ss_pred hCH-HHHHHH-hchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhh
Confidence 233 323222 2234456888899999999999999999999988752 000000
Q ss_pred ----------------------H--------------------------------------------------HHHHHHH
Q 045672 242 ----------------------N--------------------------------------------------SIIGGFA 249 (643)
Q Consensus 242 ----------------------~--------------------------------------------------~li~~~~ 249 (643)
. -+.-...
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~ 387 (987)
T PRK09782 308 FADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLM 387 (987)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 0 0001123
Q ss_pred hCCChhHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHhcC-----------------------------------------
Q 045672 250 QNSDVDEALNLYKRMKRA-G-FAADQSTLTSVLRACTGL----------------------------------------- 286 (643)
Q Consensus 250 ~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~a~~~~----------------------------------------- 286 (643)
+.|+.++|..+|+..... + ..++......++..+...
T Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 467 (987)
T PRK09782 388 QNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL 467 (987)
T ss_pred HcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh
Confidence 455566666666554431 0 111111222233333222
Q ss_pred ----------------------ChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHH
Q 045672 287 ----------------------ALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--KDVISWST 342 (643)
Q Consensus 287 ----------------------~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~ 342 (643)
+..++|...+.......|+......+...+...|++++|...|+++.. ++...+..
T Consensus 468 l~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~ 547 (987)
T PRK09782 468 LGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLA 547 (987)
T ss_pred cccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHH
Confidence 233344444444444333333333334444578888888888876643 33445666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRIKPNY-ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 421 (643)
+...+.+.|+.++|...|++..+.. |+. ..+..+.......|++++|...++...+ ..|+...+..+..++.+.
T Consensus 548 la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHC
Confidence 6677788888888888888887653 433 3333334445566899999988888876 356778888889999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHH
Q 045672 422 GKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKT 499 (643)
Q Consensus 422 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 499 (643)
|++++|.+.+++. ...|+ ...+..+..++...|+.++|+..++++++..|+++..+..++.+|...|++++|...+++
T Consensus 623 G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 623 HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999887 45564 446677777888999999999999999999999999999999999999999999999998
Q ss_pred HHhCC
Q 045672 500 MRARG 504 (643)
Q Consensus 500 m~~~g 504 (643)
..+..
T Consensus 703 Al~l~ 707 (987)
T PRK09782 703 VIDDI 707 (987)
T ss_pred HHhcC
Confidence 87643
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=5.2e-19 Score=183.59 Aligned_cols=294 Identities=12% Similarity=0.074 Sum_probs=243.6
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcCC
Q 045672 214 IDIYAKLGELRNAECVFNEMPTR---DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD---QSTLTSVLRACTGLA 287 (643)
Q Consensus 214 i~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~ 287 (643)
...+...|++++|...|+++.+. +..+|..+...+...|++++|..+++.+...+..++ ..++..+...+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34567889999999999998753 445788899999999999999999999987543222 245777888899999
Q ss_pred hhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC--------hhhHHHHHHHHHhcCCHHHHHH
Q 045672 288 LLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD--------VISWSTMISGLAQNGYSQEALK 358 (643)
Q Consensus 288 ~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~--------~~~~~~li~~~~~~g~~~~A~~ 358 (643)
+++.|..++..+.+ .+.+..+++.++..|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|+.
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999998 66677889999999999999999999999985432 1245667788899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 045672 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE 437 (643)
Q Consensus 359 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 437 (643)
.|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+. +.......+..++.+|.+.|++++|.+.++++ ...
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999998753 233557777888999999999999999999873 21122456888999999999999999999987 456
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHc---cCChhHHHHHHHHHHhCCCCcCCc
Q 045672 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN---SQKWDEVAEVRKTMRARGITKEPG 510 (643)
Q Consensus 438 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 510 (643)
|+...+..+...+.+.|++++|...++++++..|++. .+..+...+.. .|+.+++..++++|.++++.++|.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7777778888999999999999999999999999876 56655655553 569999999999999999999885
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=2.4e-18 Score=170.32 Aligned_cols=418 Identities=14% Similarity=0.170 Sum_probs=331.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhC
Q 045672 77 YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDA 153 (643)
Q Consensus 77 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 153 (643)
...|..-..+.|++++|++.-...-..+. .+....-.+-..+.+..+++....--....+ .-..+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-CcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 34455556678999999886665544332 2223333334556666666654432222222 2456899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhchhhHH-HHHHHHHHhCCCCchhHH-HHHHHHHHHcCCHHHHHHHH
Q 045672 154 KMNDKALELLIFMLREGVRPN-MFTYSAVLRACDSLIILR-QLHCGIIKVGFESDVFVR-SALIDIYAKLGELRNAECVF 230 (643)
Q Consensus 154 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~-~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f 230 (643)
|+.++|+.+|+.+.+. +|+ ...|..+-.++...|+.+ ..........+.|+.... +-+.+..-..|++.+|...+
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 9999999999999976 553 557777777777777777 333333444566765544 33555666789999999988
Q ss_pred hhCCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCc
Q 045672 231 NEMPT--RD-LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD-QSTLTSVLRACTGLALLELGTQVHVHVLK-YDHD 305 (643)
Q Consensus 231 ~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~ 305 (643)
.+..+ |. .+.|+.|...+-.+|+...|+..|++..+ +.|+ ...|..+...+...+.++.|...+.++.. -+..
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~ 285 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH 285 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc
Confidence 77655 32 47899999999999999999999999887 4554 35677788888888888999888888888 5555
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCCC--C-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQK--D-VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFA 381 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 381 (643)
..++..|.-.|..+|.++-|...+++..+. + ...|+.|..++-..|+..+|.+.|.+.+. +.|+ ....+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence 678888889999999999999999998543 3 46899999999999999999999999987 4566 5688899999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAV-TWRALLGACKVHRNTDL 458 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~ 458 (643)
+...|.+++|..+|....+ +.|. ....+.|...|-.+|++++|..-+++. .++|+.. .++.+...|...|+.+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 9999999999999998875 4565 457889999999999999999999887 7888754 89999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 459 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
|.+.+.+++..+|.-..++..|+.+|..+|+..+|..-++...+-.
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999887643
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=5.3e-16 Score=172.99 Aligned_cols=447 Identities=11% Similarity=0.002 Sum_probs=308.2
Q ss_pred hHHHHHHHHH--hCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 045672 41 SLLDDFTRFC--YQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118 (643)
Q Consensus 41 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 118 (643)
++--+..++. ..|++++|+..|+...+.. +-+..++..+..++...|+.++|+...++.++..+ .|...+..+ ..
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~ 120 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AA 120 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HH
Confidence 3444444443 3599999999999999875 34578899999999999999999999999999753 344444444 33
Q ss_pred HHcCCChhHHHHHHccCCC--C-CcchHHHHHHH--------HHhCCChhHHHHHHHHHHHCCCCCChhhHHHH-HHHHh
Q 045672 119 HVKFSLLEEAQVLFDQMPE--R-NVVSWTTMISA--------YCDAKMNDKALELLIFMLREGVRPNMFTYSAV-LRACD 186 (643)
Q Consensus 119 ~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~ 186 (643)
+ ++.++|..+++++.. | +...+..+... |.+.++..++ ++ .......|+..+.... .+.+.
T Consensus 121 i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~A---L~-lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 121 I---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQ---LN-DATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred h---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHH---HH-HhhhCCCCCcHHHHHHHHHHHH
Confidence 3 899999999999975 3 34455555444 6666444444 44 3333334455555555 78888
Q ss_pred chhhHH---HHHHHHHHhCCCCchhHHHHHHHHHHH-cCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 045672 187 SLIILR---QLHCGIIKVGFESDVFVRSALIDIYAK-LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262 (643)
Q Consensus 187 ~~~~~~---~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 262 (643)
..++++ .+...+.+.+. .+..-...|..+|.. .++ +++..+++...+.++..+..+...|.+.|+.++|.++++
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888877 56666666653 345556667778888 477 999999887656788999999999999999999999998
Q ss_pred HHHHcCCC-CCHHHHHHHH------------------------------HH-----------------------------
Q 045672 263 RMKRAGFA-ADQSTLTSVL------------------------------RA----------------------------- 282 (643)
Q Consensus 263 ~m~~~g~~-p~~~t~~~ll------------------------------~a----------------------------- 282 (643)
++...-.. |...++.-.+ .-
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 351 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAV 351 (987)
T ss_pred hCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhh
Confidence 87543111 2211111100 00
Q ss_pred ----------------------------------HhcCChhHhHHHHHHHHhhcCC------------------------
Q 045672 283 ----------------------------------CTGLALLELGTQVHVHVLKYDH------------------------ 304 (643)
Q Consensus 283 ----------------------------------~~~~~~~~~a~~i~~~~~~~~~------------------------ 304 (643)
....|+.++|.+++......+.
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 0122334444444433322111
Q ss_pred --------------------------------------------chhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhH
Q 045672 305 --------------------------------------------DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340 (643)
Q Consensus 305 --------------------------------------------~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~ 340 (643)
+...+..+...+.. |+.++|...|.+.....+..+
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~ 510 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW 510 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH
Confidence 12222333333333 455566665555433222234
Q ss_pred HHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 045672 341 STMISG--LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418 (643)
Q Consensus 341 ~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 418 (643)
+.+..+ +.+.|++++|+..|+++... .|+...+..+..++.+.|+.++|...++...+. . ++....+..+...+
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l 586 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQR 586 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHH
Confidence 444333 45789999999999987653 455555666777788899999999999988763 2 23333444444455
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHH
Q 045672 419 GRAGKLQEAVKLIHEM-PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497 (643)
Q Consensus 419 ~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 497 (643)
.+.|++++|...+++. ...|+...|..+...+.+.|++++|+..++++++++|+++..+..++.++...|++++|.+.+
T Consensus 587 ~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 587 YIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5669999999999887 567888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 045672 498 KTMRARG 504 (643)
Q Consensus 498 ~~m~~~g 504 (643)
++..+..
T Consensus 667 ~~AL~l~ 673 (987)
T PRK09782 667 ERAHKGL 673 (987)
T ss_pred HHHHHhC
Confidence 9988753
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=1.1e-16 Score=178.35 Aligned_cols=394 Identities=11% Similarity=0.036 Sum_probs=249.2
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 045672 44 DDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123 (643)
Q Consensus 44 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 123 (643)
-.+......|+.++|++++.+..... +.+...+..+..++...|++++|..+++..++.. +.+......+..++...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 34555667888888888888887532 4455568888888888888888888888888764 234566677788888888
Q ss_pred ChhHHHHHHccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHH
Q 045672 124 LLEEAQVLFDQMPE--R-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIK 200 (643)
Q Consensus 124 ~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~ 200 (643)
+.++|...+++..+ | +.. |..+...+...|++++|+..++++.+. .|+
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~-------------------------- 148 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQ-------------------------- 148 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC--------------------------
Confidence 88888888887754 3 444 777888888888888888888888764 343
Q ss_pred hCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcc--------hHHHHHHHHH-----hCCCh---hHHHHHHHHH
Q 045672 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV--------VWNSIIGGFA-----QNSDV---DEALNLYKRM 264 (643)
Q Consensus 201 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m 264 (643)
+...+..+...+...|..+.|.+.++.... ++. ....++.... ..+++ ++|++.++.+
T Consensus 149 -----~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 149 -----TQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred -----CHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence 233334477777788888888888877765 211 1111222111 11223 5566666666
Q ss_pred HHc-CCCCCHH-HHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC--hh--
Q 045672 265 KRA-GFAADQS-TLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD--VI-- 338 (643)
Q Consensus 265 ~~~-g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~--~~-- 338 (643)
.+. ...|+.. .+.. .....+.++...|++++|...|+.+.+.+ ..
T Consensus 223 l~~~~~~p~~~~~~~~-----------------------------a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~ 273 (765)
T PRK10049 223 EALWHDNPDATADYQR-----------------------------ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW 273 (765)
T ss_pred HhhcccCCccchHHHH-----------------------------HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH
Confidence 543 1122211 1100 00000122335567777777777765432 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----------CC
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKP---NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG----------ID 405 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~ 405 (643)
.-..+...|...|++++|+..|+++....... .......+..++...|++++|.++++.+.+... -.
T Consensus 274 a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~ 353 (765)
T PRK10049 274 AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSI 353 (765)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCC
Confidence 11123556777777777777777765532110 123344555566777777777777777665210 01
Q ss_pred CC---hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 045672 406 PG---REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480 (643)
Q Consensus 406 p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 480 (643)
|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+...|++++|+..++++++++|+++..+..+
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 22 223455667777788888888887776 2233 455677777777788888888888888888888877777788
Q ss_pred HHHHHccCChhHHHHHHHHHHhC
Q 045672 481 SNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 481 ~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+..+...|++++|..+++.+.+.
T Consensus 434 a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 434 AWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh
Confidence 88888888888888888777654
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=1.4e-15 Score=169.46 Aligned_cols=371 Identities=11% Similarity=0.042 Sum_probs=264.0
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045672 38 NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117 (643)
Q Consensus 38 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (643)
+...+..+...+...|++++|+.+|++..+.. +.+...+..+...+...|++++|...++.+++..+ .+.. +..+..
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~ 124 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAY 124 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHH
Confidence 44458889999999999999999999988763 44567777888889999999999999999998743 4555 888899
Q ss_pred HHHcCCChhHHHHHHccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHH
Q 045672 118 MHVKFSLLEEAQVLFDQMPE--R-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQL 194 (643)
Q Consensus 118 ~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 194 (643)
++...|+.++|...++++.+ | +...+..+...+...|..++|++.+++... .|+ +..
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~---~~~-------------- 184 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPA---EKR-------------- 184 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHH---HHH--------------
Confidence 99999999999999998876 3 455667788888899999999998876652 333 100
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHH-----HcCCH---HHHHHHHhhCCC---CCcch---H----HHHHHHHHhCCChhH
Q 045672 195 HCGIIKVGFESDVFVRSALIDIYA-----KLGEL---RNAECVFNEMPT---RDLVV---W----NSIIGGFAQNSDVDE 256 (643)
Q Consensus 195 ~~~~~~~g~~~~~~~~~~li~~y~-----~~g~~---~~A~~~f~~~~~---~~~~~---~----~~li~~~~~~g~~~~ 256 (643)
.. .......++..+. ..+++ ++|.+.++.+.+ .++.. + ...+..+...|++++
T Consensus 185 -------~l--~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 185 -------DL--EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred -------HH--HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 00 1112222333332 22334 677877777653 22211 1 112345567799999
Q ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC
Q 045672 257 ALNLYKRMKRAGFA-ADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK 335 (643)
Q Consensus 257 A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~ 335 (643)
|+..|+++.+.+.+ |+..-. .+...|...|++++|...|+++.+.
T Consensus 256 A~~~~~~ll~~~~~~P~~a~~----------------------------------~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPWAQR----------------------------------WVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HHHHHHHhhccCCCCCHHHHH----------------------------------HHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 99999999887532 322111 1234555666666666666665332
Q ss_pred C-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHhccCCHHHHHHH
Q 045672 336 D-------VISWSTMISGLAQNGYSQEALKLFESMKVSR-----------IKPNY---ITIVGVLFACSHAGFVEDGWNH 394 (643)
Q Consensus 336 ~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~ 394 (643)
+ ...+..+..++...|++++|+++++++.... -.|+. ..+..+...+...|+.++|++.
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1 1234445556777788888888877776542 12342 2344566678889999999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 395 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
++++.. ..+.+...+..+...+...|++++|++.+++. ...|| ...+..+...+...|++++|+.+++++++..|+
T Consensus 382 l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 382 ARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 999987 34556788899999999999999999999987 55676 446666667788999999999999999999999
Q ss_pred Ccch
Q 045672 473 DPGT 476 (643)
Q Consensus 473 ~~~~ 476 (643)
++.+
T Consensus 460 ~~~~ 463 (765)
T PRK10049 460 DPGV 463 (765)
T ss_pred CHHH
Confidence 8743
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=1.3e-15 Score=166.81 Aligned_cols=414 Identities=11% Similarity=0.003 Sum_probs=294.0
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 045672 42 LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK 121 (643)
Q Consensus 42 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 121 (643)
+...-..+.+.|++++|+..|++.... .|+...|..+..++.+.|++++|...+...++..+ .+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 445567888999999999999998864 67888899999999999999999999999998753 456788889999999
Q ss_pred CCChhHHHHHHccCCCCCc---chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH-HHHHH
Q 045672 122 FSLLEEAQVLFDQMPERNV---VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR-QLHCG 197 (643)
Q Consensus 122 ~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-~~~~~ 197 (643)
.|++++|..-|......+. .....++.-+.. ..+.....+..+.. .++...+..+ ..+....... ....
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~- 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKPRPAG- 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCcchhh-
Confidence 9999999987765432111 111111111111 22333333333221 1111111111 1111000000 0000
Q ss_pred HHHhCCCCchhHHHHHHHHH------HHcCCHHHHHHHHhhCCCC------CcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 045672 198 IIKVGFESDVFVRSALIDIY------AKLGELRNAECVFNEMPTR------DLVVWNSIIGGFAQNSDVDEALNLYKRMK 265 (643)
Q Consensus 198 ~~~~g~~~~~~~~~~li~~y------~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 265 (643)
. ......+......++..+ ...+++++|.+.|++..+. +...|+.+...+...|++++|+..|++..
T Consensus 280 ~-~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 280 L-EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred h-hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 000000111111111111 2347899999999887642 34578888899999999999999999988
Q ss_pred HcCCCCC-HHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhH
Q 045672 266 RAGFAAD-QSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--K-DVISW 340 (643)
Q Consensus 266 ~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~ 340 (643)
+. .|+ ...+..+...+...|+++.|...+..+.+ .+.+..++..+...|...|++++|...|++..+ | +...|
T Consensus 359 ~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~ 436 (615)
T TIGR00990 359 EL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSH 436 (615)
T ss_pred Hc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHH
Confidence 75 454 56788888889999999999999999999 666678999999999999999999999998854 2 56678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-H-------HH
Q 045672 341 STMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR-E-------HY 411 (643)
Q Consensus 341 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-------~~ 411 (643)
..+...+.+.|++++|+..|++.... .|+ ...+..+...+...|++++|...|+...+. .|+. . .+
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHH
Confidence 88889999999999999999998874 454 678888889999999999999999998762 3321 1 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 412 SCMIDLLGRAGKLQEAVKLIHEM-PYEPDA-VTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
+.....+...|++++|.+++++. ...|+. ..+..+...+...|++++|+..++++.++.+..
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 22233344579999999999886 555654 468888999999999999999999999987754
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=5.9e-16 Score=168.85 Aligned_cols=337 Identities=9% Similarity=-0.003 Sum_probs=225.3
Q ss_pred HHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhH
Q 045672 115 LLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL 191 (643)
Q Consensus 115 li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 191 (643)
++..+.+.|+.++|..+++.... .+...+..++.+....|++++|++.|+++.+. .|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~----------------- 108 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVC----------------- 108 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCC-----------------
Confidence 44555666777777777666543 23445555556666677777777777777643 333
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 045672 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268 (643)
Q Consensus 192 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 268 (643)
+...+..+...+.+.|++++|...|++... .+...|..+...+...|++++|...++.+....
T Consensus 109 --------------~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 109 --------------QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred --------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 223344566778888888888888887654 245677778888888888888888888776653
Q ss_pred CCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cC-CchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHH
Q 045672 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YD-HDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTM 343 (643)
Q Consensus 269 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~-~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~l 343 (643)
..+ ...+.. +..+...|++++|...+..+.+ .+ ++......+...+.+.|++++|...|++... .+...+..+
T Consensus 175 P~~-~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 PPR-GDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CCC-HHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 222 222222 2346677888888888887776 22 2333444556777788888888888877643 245667777
Q ss_pred HHHHHhcCCHHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 045672 344 ISGLAQNGYSQE----ALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418 (643)
Q Consensus 344 i~~~~~~g~~~~----A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 418 (643)
...|.+.|++++ |+..|++..+. .|+ ...+..+...+...|++++|...++...+. -+.+...+..+...|
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l 328 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 888888888775 78888887764 444 556777777888888888888888887763 223455666777888
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHH
Q 045672 419 GRAGKLQEAVKLIHEM-PYEPDAVTWR-ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEV 496 (643)
Q Consensus 419 ~~~g~~~~A~~~~~~m-~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 496 (643)
.+.|++++|.+.++++ ...|+...+. .+..++...|+.++|...++++++..|++. ...+++|...
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~ 396 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLA 396 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHH
Confidence 8888888888888776 3456554433 344567788888888888888888887753 2344455555
Q ss_pred HHHHHh
Q 045672 497 RKTMRA 502 (643)
Q Consensus 497 ~~~m~~ 502 (643)
+....+
T Consensus 397 ~~~~~~ 402 (656)
T PRK15174 397 LDGQIS 402 (656)
T ss_pred HHHHHH
Confidence 555544
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=1.4e-15 Score=165.99 Aligned_cols=317 Identities=11% Similarity=0.038 Sum_probs=153.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC--C-CcchHHHHHHHHHhCC
Q 045672 78 AELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE--R-NVVSWTTMISAYCDAK 154 (643)
Q Consensus 78 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g 154 (643)
..++..+.+.|++++|..+++..+...+.+ ......++......|++++|...|+++.+ | +...|..+...+.+.|
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 334444445555555555555555543322 22222333333445555555555555443 1 2334555555555555
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 045672 155 MNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234 (643)
Q Consensus 155 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 234 (643)
++++|++.|++..+. .|+. ...+..+...|...|++++|...++.+.
T Consensus 125 ~~~~Ai~~l~~Al~l--~P~~-------------------------------~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 125 QYATVADLAEQAWLA--FSGN-------------------------------SQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred CHHHHHHHHHHHHHh--CCCc-------------------------------HHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 555555555555432 2221 1222234444455555555555544332
Q ss_pred C--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHh
Q 045672 235 T--R-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNN 310 (643)
Q Consensus 235 ~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~ 310 (643)
. | +...+..+ ..+.+.|++++|...++.+.+....++......+..++...|++++|...+..+.+ .+.+...+.
T Consensus 172 ~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~ 250 (656)
T PRK15174 172 QEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR 250 (656)
T ss_pred HhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 1 1 11222222 22444555555555555554432222233333334444555555555555555555 333444555
Q ss_pred HHHHHHHhcCCHHH----HHHHHhhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 045672 311 ALLDMYCKCGSLED----AMSVFSRMIQ--K-DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFAC 382 (643)
Q Consensus 311 ~Li~~y~~~g~~~~----A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 382 (643)
.+...|...|++++ |...|++... | +...+..+...+.+.|++++|+..+++.... .|+ ......+..++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 56666666666554 5555555532 2 3445556666666666666666666666553 333 33444455556
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 383 SHAGFVEDGWNHFKSMKKFYGIDPGR-EHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 383 ~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
.+.|++++|...|+.+.+. .|+. ..+..+..++...|+.++|.+.|++.
T Consensus 329 ~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 329 RQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666666665542 2332 22333445556666666666666554
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=1.7e-14 Score=157.86 Aligned_cols=422 Identities=12% Similarity=0.044 Sum_probs=260.6
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCH--hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 045672 42 LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADS--VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMH 119 (643)
Q Consensus 42 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 119 (643)
|...| ...++|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|...++..+... .........+...|
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly 112 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAY 112 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHH
Confidence 44444 356889999999999999875 3443 234 77788888899999999999887211 12223333345688
Q ss_pred HcCCChhHHHHHHccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHH
Q 045672 120 VKFSLLEEAQVLFDQMPE--R-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHC 196 (643)
Q Consensus 120 ~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 196 (643)
...|++++|.++|+++.+ | |...+..++..+...++.++|++.++++... .|+...+..
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~---------------- 174 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMT---------------- 174 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHH----------------
Confidence 888999999999999876 2 4566777888889999999999999998755 455444421
Q ss_pred HHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 045672 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT--R-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273 (643)
Q Consensus 197 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 273 (643)
++..+...++..+|.+.++++.+ | +...+..+..+..+.|-...|+++..+-... +.+..
T Consensus 175 ----------------layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~ 237 (822)
T PRK14574 175 ----------------LSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEH 237 (822)
T ss_pred ----------------HHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHH
Confidence 22222223444345555555543 2 2334444555555555555555444321110 01100
Q ss_pred HH------HHHHHHHH-----hcCChh---HhHHHHHHHHhh-c---CCchhH-HhH---HHHHHHhcCCHHHHHHHHhh
Q 045672 274 ST------LTSVLRAC-----TGLALL---ELGTQVHVHVLK-Y---DHDLIL-NNA---LLDMYCKCGSLEDAMSVFSR 331 (643)
Q Consensus 274 ~t------~~~ll~a~-----~~~~~~---~~a~~i~~~~~~-~---~~~~~~-~~~---Li~~y~~~g~~~~A~~~~~~ 331 (643)
.- ....++.- ....++ +.+..-++.+.. . ++.... ..+ -+-++.+.|++.++.+.|+.
T Consensus 238 ~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~ 317 (822)
T PRK14574 238 YRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA 317 (822)
T ss_pred HHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 00 00000000 011122 222222333332 1 111111 122 23455677888888888888
Q ss_pred cCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 045672 332 MIQKD----VISWSTMISGLAQNGYSQEALKLFESMKVSR-----IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402 (643)
Q Consensus 332 m~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 402 (643)
+.... ..+-.++.++|...+++++|+.+|+++.... ..++......|..++..++++++|..+++.+.+..
T Consensus 318 l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 318 MEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 86432 2244567778888888888888888875532 12223334677778888888888888888887621
Q ss_pred C----------CCCC---hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045672 403 G----------IDPG---REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKIL 467 (643)
Q Consensus 403 ~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 467 (643)
. -.|+ ...+..++..+...|++.+|++.++++ ...| |...+..+.+.+...|.+.+|+..++.+.
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 1 0122 123445667777888888888888877 2223 66677777788888888888888888888
Q ss_pred hcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 468 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
.++|++..+....+..+...|+|++|..+.+.+.+.
T Consensus 478 ~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 478 SLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 888888888888888888888888888888777654
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=7.6e-14 Score=133.04 Aligned_cols=416 Identities=17% Similarity=0.183 Sum_probs=273.0
Q ss_pred cchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHH--ccCCHHHH-HHHHHHHHHcCCCCchhHHHHH
Q 045672 39 SSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCL--ARHAVEEA-KLVHNHVLSGGFEPETFLVNIL 115 (643)
Q Consensus 39 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 115 (643)
+++=|.++. ...+|...++.-+|+.|.+.|+..+...-..|++.-+ ...++.-+ .+-|-.|.+.|- .+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc---
Confidence 445566554 4567889999999999999998888776666655433 33333322 234444555443 233333
Q ss_pred HHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHH
Q 045672 116 LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLH 195 (643)
Q Consensus 116 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 195 (643)
+.|++.+ -+|+. ..+...+|..||.+.++--..+.|.++|++-.+...+.+..+||.+|.+.+-..+ ..+.
T Consensus 191 -----K~G~vAd--L~~E~-~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-K~Lv 261 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFET-LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-KKLV 261 (625)
T ss_pred -----ccccHHH--HHHhh-cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-HHHH
Confidence 4555544 44544 4456789999999999999999999999999999899999999999987544333 4788
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHh----hCC----CCCcchHHHHHHHHHhCCChhH-HHHHHHHHHH
Q 045672 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN----EMP----TRDLVVWNSIIGGFAQNSDVDE-ALNLYKRMKR 266 (643)
Q Consensus 196 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~----~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 266 (643)
.+|+...+.||..|+|+++...++.|+++.|.+.+- +|+ +|...+|..+|..+++.++..+ |..++.+++.
T Consensus 262 ~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 262 AEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 999999999999999999999999999988776554 443 4788899999999999888755 4445555543
Q ss_pred ----cCCCC----CHHHHHHHHHHHhcCChhHhHHHHHHHHhh------cCCc---hhHHhHHHHHHHhcCCHHHHHHHH
Q 045672 267 ----AGFAA----DQSTLTSVLRACTGLALLELGTQVHVHVLK------YDHD---LILNNALLDMYCKCGSLEDAMSVF 329 (643)
Q Consensus 267 ----~g~~p----~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~------~~~~---~~~~~~Li~~y~~~g~~~~A~~~~ 329 (643)
+.++| |...|...++.|.++.+.+.|.+++..... ++++ ..-|..+.+..+.....+.-...|
T Consensus 342 ~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y 421 (625)
T KOG4422|consen 342 SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWY 421 (625)
T ss_pred hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333 556788999999999999999999988875 3333 245566777888888888888888
Q ss_pred hhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CH--------HH-----H
Q 045672 330 SRMIQ----KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG-FV--------ED-----G 391 (643)
Q Consensus 330 ~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~~--------~~-----a 391 (643)
+.|+. |+..+-.-++.+..-.|+++-.-++|..|+..|..-+......++.-+++.. .. .. |
T Consensus 422 ~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 422 EDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred HHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 88854 3555555666777777888777778888777765444444444443333322 00 00 0
Q ss_pred HHHHHHhH----HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045672 392 WNHFKSMK----KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-------PYEPDAVTWRALLGACKVHRNTDLAI 460 (643)
Q Consensus 392 ~~~~~~~~----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~ 460 (643)
..+++... +.....-.....++..-.+.|.|+.++|.+++.-. +..|.....--++.+..+.++...|.
T Consensus 502 ad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 01111000 00012223345566666666667776666666443 22222222223344444555555555
Q ss_pred HHHHHHHh
Q 045672 461 CAAKKILN 468 (643)
Q Consensus 461 ~~~~~~~~ 468 (643)
.+++-+.+
T Consensus 582 ~~lQ~a~~ 589 (625)
T KOG4422|consen 582 EVLQLASA 589 (625)
T ss_pred HHHHHHHH
Confidence 55555543
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=4.1e-14 Score=148.06 Aligned_cols=467 Identities=13% Similarity=0.089 Sum_probs=343.1
Q ss_pred CCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCC--CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhH
Q 045672 34 TITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVR--ADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111 (643)
Q Consensus 34 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 111 (643)
....|++..|.|-.-|.-.|++..+..+...+...... .-..+|-.+.+++-..|+++.|...|...++.....-+..
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 45567788888999999999999999999988754311 1234578899999999999999999999888654332445
Q ss_pred HHHHHHHHHcCCChhHHHHHHccCCC--C-CcchHHHHHHHHHhCC----ChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 045672 112 VNILLNMHVKFSLLEEAQVLFDQMPE--R-NVVSWTTMISAYCDAK----MNDKALELLIFMLREGVRPNMFTYSAVLRA 184 (643)
Q Consensus 112 ~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 184 (643)
+-.|..+|.+.|+++.+...|+.+.+ | +..+.-.|...|+..+ ..+.|..++.+..+.- .-|...|..+-..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 56788999999999999999998876 3 4456666666777665 3455666655555432 2344455444444
Q ss_pred Hhchhh------HHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCC-------Ccc------hHHHHH
Q 045672 185 CDSLII------LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-------DLV------VWNSII 245 (643)
Q Consensus 185 ~~~~~~------~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------~~~------~~~~li 245 (643)
+-.... +..+...+...+-.+.+.+.|.+...+...|+++.|...|++.... |.. +--.+.
T Consensus 424 ~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 424 LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 322222 2255556677777789999999999999999999999999876432 221 112244
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHH
Q 045672 246 GGFAQNSDVDEALNLYKRMKRAGFAADQST-LTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLE 323 (643)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~ 323 (643)
..+-..++++.|.+.|..+.+. .|.-+. |.-++......+...++...+..+.. ...++.+++-+.+.|.+...+.
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 5556678999999999999885 454433 33333233345678888888998888 6777778888888999998888
Q ss_pred HHHHHHhhcC-----CCChhhHHHHHHHHH------------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 045672 324 DAMSVFSRMI-----QKDVISWSTMISGLA------------QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386 (643)
Q Consensus 324 ~A~~~~~~m~-----~~~~~~~~~li~~~~------------~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 386 (643)
.|.+-|..+. .+|+.+.-+|.+.|. ..+..++|+++|.+.++.. +-|...-+.+...++..|
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhcc
Confidence 8888666552 235555444555443 2356789999999988753 446677788888889999
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045672 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM----PYEPDAVTWRALLGACKVHRNTDLAICA 462 (643)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 462 (643)
++.+|..+|....+. ......+|-.+...|..+|++..|.++|+.. .-+.+..+.+.|..++...|.+.+|.+.
T Consensus 661 ~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred CchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999999999984 3345567888999999999999999999876 2234777889999999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHc-------------------cCChhHHHHHHHHHHhCCCC
Q 045672 463 AKKILNLDPQDPGTYILLSNIYAN-------------------SQKWDEVAEVRKTMRARGIT 506 (643)
Q Consensus 463 ~~~~~~~~p~~~~~~~~l~~~~~~-------------------~g~~~~a~~~~~~m~~~g~~ 506 (643)
+..+....|.++..-..++-...+ .+..++|.++|..|...+-+
T Consensus 739 ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 739 LLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999998766655544432 34678888999999876543
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=3e-13 Score=148.10 Aligned_cols=391 Identities=14% Similarity=0.066 Sum_probs=283.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchH-HHH--HHHHHhC
Q 045672 77 YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSW-TTM--ISAYCDA 153 (643)
Q Consensus 77 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-~~l--i~~~~~~ 153 (643)
|...+. ..+.|+++.|...++++++..+.....++ .++..+...|+.++|+..+++...|+...+ ..+ ...|...
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 444443 45789999999999999987543223444 888999999999999999999987644443 333 4577888
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhC
Q 045672 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233 (643)
Q Consensus 154 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 233 (643)
|++++|+++|+++.+. .|+. ..++..++..|...++.++|++.++++
T Consensus 116 gdyd~Aiely~kaL~~--dP~n-------------------------------~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 116 KRWDQALALWQSSLKK--DPTN-------------------------------PDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred CCHHHHHHHHHHHHhh--CCCC-------------------------------HHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 9999999999999876 4442 233334778889999999999999999
Q ss_pred CCCCcchHHHHHHHHHh--CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHH-
Q 045672 234 PTRDLVVWNSIIGGFAQ--NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILN- 309 (643)
Q Consensus 234 ~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~- 309 (643)
...+......+..+|.. .++..+|++.++++.+.. +-+...+.....+..+.|....|.++...-.. +.+....+
T Consensus 163 ~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l 241 (822)
T PRK14574 163 AERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL 241 (822)
T ss_pred cccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH
Confidence 87554433334445544 566666999999999863 33566778888888999988888877665444 22221111
Q ss_pred -----hHHHHH---HH--hcCC---HHHHHHHHhhcCC-----CCh-hhH----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045672 310 -----NALLDM---YC--KCGS---LEDAMSVFSRMIQ-----KDV-ISW----STMISGLAQNGYSQEALKLFESMKVS 366 (643)
Q Consensus 310 -----~~Li~~---y~--~~g~---~~~A~~~~~~m~~-----~~~-~~~----~~li~~~~~~g~~~~A~~l~~~m~~~ 366 (643)
..++.. .. ..++ .+.|..-++.+.. |.. ..| --.+-++...|+..++++.|+.|...
T Consensus 242 ~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~ 321 (822)
T PRK14574 242 ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE 321 (822)
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence 111110 00 1122 3334444444432 211 122 23456788899999999999999998
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----CCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-C----
Q 045672 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG----IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY-E---- 437 (643)
Q Consensus 367 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~---- 437 (643)
|.+.-..+-..+..+|...+..++|..++..+....+ ..++......|.-+|..++++++|..+++++.. .
T Consensus 322 ~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~ 401 (822)
T PRK14574 322 GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQV 401 (822)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEE
Confidence 8654445788899999999999999999999876422 233455567899999999999999999988821 1
Q ss_pred -----------CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 438 -----------PDAVT-WRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 438 -----------p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
||-.. ...++..+.-.|+..+|++.++++....|.|+.....+++++...|...+|++.++.....
T Consensus 402 ~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 402 GVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred eccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 22222 3344566788999999999999999999999999999999999999999999999776643
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=1.5e-13 Score=131.78 Aligned_cols=442 Identities=11% Similarity=0.048 Sum_probs=305.6
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHH-HHHHHHccCCHHHHHHHHHHHHHcCCCCch----hHHHHHHHH
Q 045672 44 DDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAE-LIKCCLARHAVEEAKLVHNHVLSGGFEPET----FLVNILLNM 118 (643)
Q Consensus 44 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~ 118 (643)
.+.+.|..+..+.+|+..|+-+.+....||...+.. +...+.+.+.+.+|...+...+..-+..+- .+.+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 355677778889999999999988777787665432 335567788899999999988876433222 344555556
Q ss_pred HHcCCChhHHHHHHccCCC--CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh--------HHHHHHHHhch
Q 045672 119 HVKFSLLEEAQVLFDQMPE--RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT--------YSAVLRACDSL 188 (643)
Q Consensus 119 ~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--------~~~ll~a~~~~ 188 (643)
+.+.|.+++|..-|+...+ ||..+--.|+-++..-|+.++..+.|.+|..-...||..- -..++.-..+.
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 7899999999999998775 7766544555566667899999999999986543333221 12222221111
Q ss_pred hhHH-----------H-HHH--HHHHhCCCCchh-------------HH--------HHHHHHHHHcCCHHHHHHHHhhC
Q 045672 189 IILR-----------Q-LHC--GIIKVGFESDVF-------------VR--------SALIDIYAKLGELRNAECVFNEM 233 (643)
Q Consensus 189 ~~~~-----------~-~~~--~~~~~g~~~~~~-------------~~--------~~li~~y~~~g~~~~A~~~f~~~ 233 (643)
..+. . +.. .++.--+.||-. .+ -.-..-|.+.|+++.|.+++.-.
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 1111 0 000 011111122111 00 01123477889999999888877
Q ss_pred CCCCcchHHH----H-HHHHHhC-CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCch
Q 045672 234 PTRDLVVWNS----I-IGGFAQN-SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDL 306 (643)
Q Consensus 234 ~~~~~~~~~~----l-i~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~ 306 (643)
..+|..+-++ | +--|.+. .++.+|.++-+...... +-|....+.--+..-..|+++.|...+..+.. ...-+
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ 524 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT 524 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH
Confidence 7665433222 1 2223333 35666766655444321 22233222222233456899999999999887 33333
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRM---IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 383 (643)
...-.+.-.+-+.|++++|+..|-++ ...++...-.+.+.|-...+...|++++.+.... ++.|+..+..|...|-
T Consensus 525 ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 525 EALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYD 603 (840)
T ss_pred HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhh
Confidence 34444555678899999999999876 3456667777888899999999999999877653 4445778888889999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHcCCHHHHHH
Q 045672 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLGAC-KVHRNTDLAIC 461 (643)
Q Consensus 384 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-~~~g~~~~a~~ 461 (643)
+.|+-.+|.+.+-.--+ -++-+.++...|..-|....-+++|+.+|++. -++|+..-|-.++..| ++.|++++|..
T Consensus 604 qegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 604 QEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred cccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 99999999888765543 35558889999999999999999999999998 4689999999999775 67899999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHccCC
Q 045672 462 AAKKILNLDPQDPGTYILLSNIYANSQK 489 (643)
Q Consensus 462 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 489 (643)
+++......|.+...+..|.+++...|.
T Consensus 682 ~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 682 LYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999988884
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.63 E-value=6.9e-12 Score=131.73 Aligned_cols=453 Identities=14% Similarity=0.137 Sum_probs=245.5
Q ss_pred CCCcchHHHHHHHHHhC--CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC---Chh
Q 045672 52 QRDLPRAMKAMHAMQCH--GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS---LLE 126 (643)
Q Consensus 52 ~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~ 126 (643)
.++|..|+.+|...+.. ..+||... .+-.++.+.++.+.|+..|...++.++ .++.++-.|.-+-.... .+.
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHH
Confidence 45666666666664432 22333321 122334455556666666655555332 11122222111111111 222
Q ss_pred HHHHHHccCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--CChhhHHHHHHHHhchhhHH-HHHHHHHH
Q 045672 127 EAQVLFDQMP---ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR--PNMFTYSAVLRACDSLIILR-QLHCGIIK 200 (643)
Q Consensus 127 ~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~a~~~~~~~~-~~~~~~~~ 200 (643)
.+..++...- ..|++..+.|.+.|.-.|++..+..+...+...... .-...|-.+-+++-..|+.+ ...-.+..
T Consensus 254 ~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3333333221 135555666666666666666666666655543210 01122333444455555555 22223333
Q ss_pred hCCCCchhHH--HHHHHHHHHcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhCC----ChhHHHHHHHHHHHcCCCC
Q 045672 201 VGFESDVFVR--SALIDIYAKLGELRNAECVFNEMPTR---DLVVWNSIIGGFAQNS----DVDEALNLYKRMKRAGFAA 271 (643)
Q Consensus 201 ~g~~~~~~~~--~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p 271 (643)
.+..+|.+++ --|..+|.+.|+++.|...|+.+... +..+...+...|+..+ ..++|..++.+..+.- +.
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~ 412 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PV 412 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cc
Confidence 3444443332 33566666777777776666665432 3344444555555543 3345555555444431 33
Q ss_pred CHHHHHHHHHHHhcCChhHhHHHHHHHHhh------cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC-------Ch-
Q 045672 272 DQSTLTSVLRACTGLALLELGTQVHVHVLK------YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK-------DV- 337 (643)
Q Consensus 272 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~------~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-------~~- 337 (643)
|...|..+...+....- ......+..+.. ....+.+.|.+...+...|+++.|...|...... |.
T Consensus 413 d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 44555555444433322 222444444432 2344566677777777777777777777655221 11
Q ss_pred -----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH
Q 045672 338 -----ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI-TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411 (643)
Q Consensus 338 -----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 411 (643)
.+-..+...+-..++.+.|.+.|...... .|+.+ .|..++......++..+|...+..... ....++..+
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~ar 567 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNAR 567 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHH
Confidence 11122344455566777777777777663 45533 333333222334566777777777765 344555566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhcCCCCcc
Q 045672 412 SCMIDLLGRAGKLQEAVKLIHEM----PYEPDAVTWRALLGACKV------------HRNTDLAICAAKKILNLDPQDPG 475 (643)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~p~~~~ 475 (643)
+.+.+.+.+...+.-|.+-|+.. ...+|..+.-+|.+.|.+ .+..++|+++|.+++..+|.|..
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~y 647 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMY 647 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 66666777777777676644333 234677777777765543 34578899999999999999999
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCcCCceeEEE
Q 045672 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE 515 (643)
Q Consensus 476 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~ 515 (643)
+-+.++-+++..|++.+|..+|.++++....-.+ .|+-
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d--v~lN 685 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATSDFED--VWLN 685 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHhhCCc--eeee
Confidence 9999999999999999999999999987653222 4654
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=3e-12 Score=122.35 Aligned_cols=231 Identities=19% Similarity=0.232 Sum_probs=123.4
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 045672 40 SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMH 119 (643)
Q Consensus 40 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 119 (643)
.|+..||.++++-...+.|.+++++......+.+..+||.+|.+-+ +..++.+..+|+.....||.+|+|+++++.
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLSCA 283 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHHHH
Confidence 3445555555555555555555555444444445555555544432 222244445555544555555555555555
Q ss_pred HcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH-------
Q 045672 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR------- 192 (643)
Q Consensus 120 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~------- 192 (643)
++.|+++.|++ .|++++.+|++.|+.|...+|..+|..+.+.++..
T Consensus 284 akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 284 AKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred HHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 55554444332 23445555555566666666655555555544443
Q ss_pred -HHHHHHHHhCCC----CchhHHHHHHHHHHHcCCHHHHHHHHhhCCCC-----------CcchHHHHHHHHHhCCChhH
Q 045672 193 -QLHCGIIKVGFE----SDVFVRSALIDIYAKLGELRNAECVFNEMPTR-----------DLVVWNSIIGGFAQNSDVDE 256 (643)
Q Consensus 193 -~~~~~~~~~g~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----------~~~~~~~li~~~~~~g~~~~ 256 (643)
.+...+--..+. .|..-+.+-+..+.+..+.+-|.++-.-.... ...-|..+....++....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111121 13333444455555666666665554433221 12234556666777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh
Q 045672 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301 (643)
Q Consensus 257 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 301 (643)
-+.+|..|.-.-.-|+..+...+++|....+.++...+++..++.
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~ 461 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE 461 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence 788888887776777778888888877777777777777666654
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=1.4e-14 Score=142.42 Aligned_cols=251 Identities=18% Similarity=0.209 Sum_probs=110.4
Q ss_pred HHHHHHHcCCHHHHHHHHhhC-CC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 045672 213 LIDIYAKLGELRNAECVFNEM-PT----RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287 (643)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~-~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 287 (643)
+..++.+.|++++|.+++++. .. .|+..|..+.......+++++|.+.++++...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~------------------- 74 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD------------------- 74 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------------
Confidence 455555556666666655321 11 233344444444444555555555555555432
Q ss_pred hhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045672 288 LLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI--QKDVISWSTMISGLAQNGYSQEALKLFESMKV 365 (643)
Q Consensus 288 ~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 365 (643)
+.+...+..++.. ...+++++|.+++...- .++...+..++..+.+.|+++++.+++++...
T Consensus 75 ---------------~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~ 138 (280)
T PF13429_consen 75 ---------------KANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEE 138 (280)
T ss_dssp -----------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH
T ss_pred ---------------ccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 1223334455555 57788888888877663 34566777888888999999999999998775
Q ss_pred CC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHH
Q 045672 366 SR-IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEMP--YEPDAV 441 (643)
Q Consensus 366 ~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~ 441 (643)
.. .+++...|..+...+.+.|+.++|.+.+++..+. .| +......++..+...|+.+++.++++... ...|..
T Consensus 139 ~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~ 215 (280)
T PF13429_consen 139 LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD 215 (280)
T ss_dssp -T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH
Confidence 33 3456677778888889999999999999999874 45 57788889999999999999887776661 134556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
.|..+..++...|++++|+..++++....|+|+.+...+++++...|+.++|.+++++..
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 788999999999999999999999999999999999999999999999999999988764
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.55 E-value=7.5e-10 Score=111.61 Aligned_cols=456 Identities=11% Similarity=0.062 Sum_probs=312.2
Q ss_pred HHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH----HcCCCCchhHHHHHHHHHHcCC
Q 045672 48 RFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL----SGGFEPETFLVNILLNMHVKFS 123 (643)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g 123 (643)
+|++..-|+.|..++++.++. ++.+...|.+....=-..|+.+....+....+ ..|...+...|-.=...+-..|
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 444445555555555555432 34455555444444444555555544443322 2344444444444444444444
Q ss_pred ChhHHHHHHccCCC------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHH---HhchhhHHH
Q 045672 124 LLEEAQVLFDQMPE------RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN-MFTYSAVLRA---CDSLIILRQ 193 (643)
Q Consensus 124 ~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a---~~~~~~~~~ 193 (643)
..-.+..+...... .--.||+.-...|.+.+.++-|..+|...++- .|. ...|...... ++....++.
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 44444444433321 12245666666777777777777777776643 332 2333333322 233333334
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 045672 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270 (643)
Q Consensus 194 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 270 (643)
++..++.. .+.....|-.....+-..|++..|+.++.+.-+ .+...|-+-+.....+.+++.|..+|.+... ..
T Consensus 572 llqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~s 648 (913)
T KOG0495|consen 572 LLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--IS 648 (913)
T ss_pred HHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence 44443333 233455666677777888999999988877654 2556788888888899999999999988776 45
Q ss_pred CCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHH
Q 045672 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--K-DVISWSTMISG 346 (643)
Q Consensus 271 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~ 346 (643)
|+...|.--+..---++..++|.++++..++ ++.-...|-.+...+-..++++.|+..|..-.+ | .+..|-.+...
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 6666666666666667888999999999888 776678888888999999999999988877644 3 45578888777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 045672 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426 (643)
Q Consensus 347 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 426 (643)
=-+.|+.-.|..++++....+ +-|...|...+..=.+.|+.++|..+..+..+ ..+.+...|..-|.+..+.++-..
T Consensus 729 eEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchH
Confidence 788889999999999887654 44577888888888999999999998888887 456667778888888888888666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 045672 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506 (643)
Q Consensus 427 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 506 (643)
+.+.+++.. .|..+.-++...+-....++.|..-|++++..+|++..+|..+-..+...|.-++-.++++.-... .
T Consensus 806 s~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--E 881 (913)
T KOG0495|consen 806 SIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--E 881 (913)
T ss_pred HHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--C
Confidence 666666653 456666667777888889999999999999999999999999999999999999999999877653 3
Q ss_pred cCCceeEEEE
Q 045672 507 KEPGCSWIEV 516 (643)
Q Consensus 507 ~~~~~s~~~~ 516 (643)
|.-|..|..+
T Consensus 882 P~hG~~W~av 891 (913)
T KOG0495|consen 882 PTHGELWQAV 891 (913)
T ss_pred CCCCcHHHHH
Confidence 5556677543
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.51 E-value=1.5e-09 Score=109.45 Aligned_cols=411 Identities=12% Similarity=0.086 Sum_probs=319.9
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHH
Q 045672 84 CLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKAL 160 (643)
Q Consensus 84 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 160 (643)
.....+.+.|+.++....+. ++.+.. |.-+|++..-++.|.+++++..+ .+...|.+-...--.+|+.+...
T Consensus 386 AVelE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 386 AVELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred HHhccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHH
Confidence 33455666788888877775 233333 34455666678889988887765 57778888777778889998888
Q ss_pred HHHHH----HHHCCCCCChhhHHHHHHHHhchhhHH---HHHHHHHHhCCCCc--hhHHHHHHHHHHHcCCHHHHHHHHh
Q 045672 161 ELLIF----MLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESD--VFVRSALIDIYAKLGELRNAECVFN 231 (643)
Q Consensus 161 ~~~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~---~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~ 231 (643)
++..+ +...|+..+...|..=-.+|...|..- .+....+..|++.. -.+|+.-...+.+.+.++-|+.+|.
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 88765 455788888888877777776666654 56666666776543 4678888888999999999999998
Q ss_pred hCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchh
Q 045672 232 EMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLI 307 (643)
Q Consensus 232 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~ 307 (643)
...+ .+...|...+..--..|..++-..+|++.... ++-.+..+.....-.-..|+...|+.++..+.. .+.+..
T Consensus 541 ~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee 619 (913)
T KOG0495|consen 541 HALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE 619 (913)
T ss_pred HHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH
Confidence 7665 36678888888777889999999999999886 333455555555666677999999999999999 666778
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 045672 308 LNNALLDMYCKCGSLEDAMSVFSRMI--QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSH 384 (643)
Q Consensus 308 ~~~~Li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 384 (643)
+|-+-+..-.....++.|+.+|.+.. .+....|.--+...--.+..++|++++++.++. -|+ ...|..+...+-+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence 99999999999999999999998874 456667777677677788999999999998874 566 5667777778888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045672 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY--EPDAVTWRALLGACKVHRNTDLAICA 462 (643)
Q Consensus 385 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~ 462 (643)
.++++.|.+.|..=.+ ..+-.+..|-.|.+.=.+.|.+-.|..++++... ..+...|...|..-.+.|+.+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 8999999988876655 3455677888899998999999999999998843 24677999999999999999999999
Q ss_pred HHHHHhcCCC------------------------------CcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 463 AKKILNLDPQ------------------------------DPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 463 ~~~~~~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
..++++--|+ |+.....++.++....+++.|++.|.+..+.+
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 8888754443 34566677888888889999999998887654
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2e-10 Score=112.08 Aligned_cols=211 Identities=17% Similarity=0.119 Sum_probs=165.8
Q ss_pred CChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045672 286 LALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFE 361 (643)
Q Consensus 286 ~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 361 (643)
.|+.-.+.+-++.+++ .+.+...|--+..+|....+.++-.+.|+...+ .|..+|..-...+.-.+++++|..=|+
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777 333444466677788888888888888887643 356677777777777888999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 045672 362 SMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD 439 (643)
Q Consensus 362 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 439 (643)
+.+. +.|+ ...|.-+-.+..+.+.++++...|++.++ .++..+++|+.....+..++++++|.+.|+.. ...|+
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9887 4554 56777777777888999999999999998 46667889999999999999999999999876 33443
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 440 ---------AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 440 ---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
..+-.+++-. .=.+++..|+.+++++++++|....+|..|+.+-.+.|+.++|.++|++-.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2222222222 223899999999999999999988999999999999999999999998765
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.50 E-value=9e-11 Score=122.72 Aligned_cols=332 Identities=15% Similarity=0.188 Sum_probs=208.3
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH-HHHHHHHHhCC-CCchhHHHHHHHHHHHcCCHHHHH
Q 045672 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR-QLHCGIIKVGF-ESDVFVRSALIDIYAKLGELRNAE 227 (643)
Q Consensus 150 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~ 227 (643)
....|+.++|.+++.+..+.. +-+...|-.+-..+-+.|+.+ .+...++...+ +.|...|..+.....+.|+++.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 334499999999999998763 234455666555566666655 33333333333 334555666666666666666666
Q ss_pred HHHhhCCCCCcchH---HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCC
Q 045672 228 CVFNEMPTRDLVVW---NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304 (643)
Q Consensus 228 ~~f~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~ 304 (643)
-.|.+..+.++.-| ---+..|-+.|+...|++.|.++.....+.|-.-+-.
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d-------------------------- 281 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED-------------------------- 281 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH--------------------------
Confidence 66665544322222 2234455556666666666666655421111111111
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------
Q 045672 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQ--K---DVISWSTMISGLAQNGYSQEALKLFESMKVSRI----------- 368 (643)
Q Consensus 305 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----------- 368 (643)
..-..+..|...++-+.|.+.++.... . +...++.++..|.+..+++.|......+.....
T Consensus 282 ---~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 282 ---LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred ---HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 111234445555555666666655533 1 233566777777777777777777766655211
Q ss_pred ----------------CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHhcCCHHHHHHH
Q 045672 369 ----------------KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP--GREHYSCMIDLLGRAGKLQEAVKL 430 (643)
Q Consensus 369 ----------------~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~ 430 (643)
.++... .-+.-+..+....+....+.....+. .+.| +...|.-+.++|.+.|++.+|+++
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 222222 11222334444444444444444442 5334 567899999999999999999999
Q ss_pred HHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCc
Q 045672 431 IHEMP---YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507 (643)
Q Consensus 431 ~~~m~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 507 (643)
|..+- ...+...|--+...+...|.+++|++.|++++...|++..+-..|+.+|.+.|+.|+|.+.+..|..-+-..
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 99882 223577999999999999999999999999999999999999999999999999999999999887433223
Q ss_pred CCceeE
Q 045672 508 EPGCSW 513 (643)
Q Consensus 508 ~~~~s~ 513 (643)
.+++.|
T Consensus 517 ~e~~a~ 522 (895)
T KOG2076|consen 517 AEACAW 522 (895)
T ss_pred hhhccc
Confidence 355555
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49 E-value=3.1e-11 Score=124.31 Aligned_cols=285 Identities=14% Similarity=0.034 Sum_probs=203.0
Q ss_pred CCChhHHHHHHccCCCC--Cc-chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHH
Q 045672 122 FSLLEEAQVLFDQMPER--NV-VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGI 198 (643)
Q Consensus 122 ~g~~~~A~~~f~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~ 198 (643)
.|+++.|++.+...++. +. ..|-.......+.|+++.|.+.|.++.+. .|+......+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l----------------- 157 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEI----------------- 157 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHH-----------------
Confidence 68899999888876653 22 23333344457889999999999998754 4443322211
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 045672 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275 (643)
Q Consensus 199 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 275 (643)
.....+...|+++.|...++++.+ .++.....+...|.+.|++++|.+++..+.+.+..++. .
T Consensus 158 -------------~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~ 223 (398)
T PRK10747 158 -------------TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-H 223 (398)
T ss_pred -------------HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-H
Confidence 135667888999999999988765 25667888889999999999999999999987654322 2
Q ss_pred HHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCC
Q 045672 276 LTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGY 352 (643)
Q Consensus 276 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 352 (643)
...+-. ..+..++....+..+.+...++++.+++ .++.....+...+...|+
T Consensus 224 ~~~l~~-------------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 224 RAMLEQ-------------------------QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HHHHHH-------------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCC
Confidence 211000 0112222223334455666666666643 366778888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 045672 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432 (643)
Q Consensus 353 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 432 (643)
.++|.+++++..+. .||... .++.+....++.+++.+..+...+. .+-|...+.++...+.+.|++++|.+.|+
T Consensus 279 ~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le 352 (398)
T PRK10747 279 HDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFR 352 (398)
T ss_pred HHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999888773 455422 2333444568899999999888873 44566778888999999999999999998
Q ss_pred hC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 045672 433 EM-PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470 (643)
Q Consensus 433 ~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 470 (643)
.+ ...|+...+..+...+...|+.++|..++++.+.+-
T Consensus 353 ~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 353 AALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 87 667999888888899999999999999999987753
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=5e-10 Score=108.74 Aligned_cols=403 Identities=13% Similarity=0.101 Sum_probs=227.9
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC--CCc-chHHHHHHH
Q 045672 73 DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE--RNV-VSWTTMISA 149 (643)
Q Consensus 73 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~-~~~~~li~~ 149 (643)
+...|..-.+.=...+++..|+.+|+.++... ..+...|-.-+.+=.++..+..|+.+|+.... |.+ ..|--.+..
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33334444444444555555555655555543 23444555555555555555555555554432 211 123333333
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHH
Q 045672 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229 (643)
Q Consensus 150 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 229 (643)
--..|+...|.++|++-.+- .|+...|++.|+.=.+-+.++.|..+
T Consensus 151 EE~LgNi~gaRqiferW~~w----------------------------------~P~eqaW~sfI~fElRykeieraR~I 196 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEW----------------------------------EPDEQAWLSFIKFELRYKEIERARSI 196 (677)
T ss_pred HHHhcccHHHHHHHHHHHcC----------------------------------CCcHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33445555555555554422 23333333444444445555555555
Q ss_pred HhhC--CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCC
Q 045672 230 FNEM--PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA-GF-AADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDH 304 (643)
Q Consensus 230 f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~ 304 (643)
+++. ..|++.+|--....--++|+...|..+|....+. |- ..+...+++...--.+...++.|.-++..++. ++.
T Consensus 197 YerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk 276 (677)
T KOG1915|consen 197 YERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK 276 (677)
T ss_pred HHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 5543 2355555555555555555555555555544432 10 01122333333333445566677777777776 443
Q ss_pred c--hhHHhHHHHHHHhcCCHHHHHHH--------HhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045672 305 D--LILNNALLDMYCKCGSLEDAMSV--------FSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371 (643)
Q Consensus 305 ~--~~~~~~Li~~y~~~g~~~~A~~~--------~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 371 (643)
+ ..+|..+...=-+-|+......+ ++.+... |-.+|--.+..-...|+.+...++|++.+.. ++|-
T Consensus 277 ~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~ 355 (677)
T KOG1915|consen 277 GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPA 355 (677)
T ss_pred ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCch
Confidence 3 34444444444444543332222 2233332 4456666666667778888888888887764 4553
Q ss_pred H-------HHHHHHHHHH---hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH----HhcCCHHHHHHHHHhC-CC
Q 045672 372 Y-------ITIVGVLFAC---SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL----GRAGKLQEAVKLIHEM-PY 436 (643)
Q Consensus 372 ~-------~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~ 436 (643)
. ..|..+=.+| ....+++.+.++++...+ -++....++.-+--+| .|+.++..|.+++... +.
T Consensus 356 ~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~ 433 (677)
T KOG1915|consen 356 SEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK 433 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc
Confidence 1 1222222222 346778888888887776 3444555555444333 4777888888887665 66
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCcCCceeE
Q 045672 437 EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSW 513 (643)
Q Consensus 437 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 513 (643)
-|..-++...|..-.+.++++....++++.++.+|.+..++...+..-...|+++.|+.+|+....+.....|...|
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 68888888888888888888888888888888888888888888888888888888888888887765544554444
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.47 E-value=2.4e-09 Score=112.33 Aligned_cols=445 Identities=14% Similarity=0.094 Sum_probs=281.2
Q ss_pred hCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHH
Q 045672 51 YQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130 (643)
Q Consensus 51 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 130 (643)
-.|++++|.+++.+..+.. +.+...|.+|...|-..|+.+++...+-.+.... +.|...|..+.....+.|.+++|.-
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 3499999999999998775 5577889999999999999999988765554443 4566889999999999999999999
Q ss_pred HHccCCCCCcc---hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHH----HhchhhHH----HHHHHHH
Q 045672 131 LFDQMPERNVV---SWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA----CDSLIILR----QLHCGII 199 (643)
Q Consensus 131 ~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a----~~~~~~~~----~~~~~~~ 199 (643)
.|.+..+.+.. .+---+..|-+.|+...|++.|.++....-+.|..-+..++.. +-..++-+ .+.+...
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99988764433 3334456788899999999999999876432222222222222 22222222 2222233
Q ss_pred HhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--------------------------------------------
Q 045672 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT-------------------------------------------- 235 (643)
Q Consensus 200 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-------------------------------------------- 235 (643)
+.+-..+...++.++.+|.+...++.|......+..
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 333444555666777777777777766655433221
Q ss_pred -----------------------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhH
Q 045672 236 -----------------------RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292 (643)
Q Consensus 236 -----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 292 (643)
.++..|..+..+|...|++.+|+.+|..+...-.--+...|..+...+-..|..+.|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 012235556677888888888888888887764445666777788888888888888
Q ss_pred HHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChh-----hH-------HHHHHHHHhcCCHHHHHHH
Q 045672 293 TQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI-----SW-------STMISGLAQNGYSQEALKL 359 (643)
Q Consensus 293 ~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~-----~~-------~~li~~~~~~g~~~~A~~l 359 (643)
.+.+..++. .+.+..+--+|...|.+.|+.++|.+++..|..+|.. .| --....+.+.|+.++=+.+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 888888888 5555666777888888888888888888887655511 11 1233456667777765555
Q ss_pred HHHHHHCC-----CCC-----------------CHHHHHHHHHHHhccCCHHHHHHHHHH-----hHHhcCCCCC--hHH
Q 045672 360 FESMKVSR-----IKP-----------------NYITIVGVLFACSHAGFVEDGWNHFKS-----MKKFYGIDPG--REH 410 (643)
Q Consensus 360 ~~~m~~~g-----~~p-----------------~~~t~~~ll~a~~~~g~~~~a~~~~~~-----~~~~~~~~p~--~~~ 410 (643)
-.+|+... +-| ...+.-.+..+-.+.++.......... .....++.-+ -..
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 55544321 111 111111222222222221111100000 0000122221 134
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCcchH
Q 045672 411 YSCMIDLLGRAGKLQEAVKLIHEMP-----YEPDA---VTWRALLGACKVHRNTDLAICAAKKILNL-----DPQDPGTY 477 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~ 477 (643)
+.-++..+++.+++++|+.+...+- ..++. ..-...+.++...+++..|...++.++.. +|.....|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 5667889999999999999988771 22222 12344566788899999999999999876 66655666
Q ss_pred HHHHHHHHccCChhHHHHHH
Q 045672 478 ILLSNIYANSQKWDEVAEVR 497 (643)
Q Consensus 478 ~~l~~~~~~~g~~~~a~~~~ 497 (643)
+...+...+.|+-.-=.+.+
T Consensus 709 n~~~s~~~~~~q~v~~~R~~ 728 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLI 728 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 65556666655543333333
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=5.9e-11 Score=122.29 Aligned_cols=274 Identities=12% Similarity=0.086 Sum_probs=209.4
Q ss_pred cCCHHHHHHHHhhCCCC--CcchHHHH-HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhcCChhHhHHH
Q 045672 220 LGELRNAECVFNEMPTR--DLVVWNSI-IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT--SVLRACTGLALLELGTQ 294 (643)
Q Consensus 220 ~g~~~~A~~~f~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 294 (643)
.|+++.|++.+....+. ++..+..+ .....+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999999876653 23333333 44447889999999999999874 55554333 33567788999999999
Q ss_pred HHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCCh-----------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 045672 295 VHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV-----------ISWSTMISGLAQNGYSQEALKLFES 362 (643)
Q Consensus 295 i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~~ 362 (643)
.++...+ .+.+..+...+...|.+.|++++|.+++..+.+... ..|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 9999999 666788899999999999999999999998864321 1333444444445556677777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-
Q 045672 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDA- 440 (643)
Q Consensus 363 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~- 440 (643)
+.+. .+.+......+..++...|+.++|..++++..+. +|+.... ++.+....++.+++.+..++. +..|+.
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 6443 3456778888999999999999999999888763 4555322 233334569999999999877 445654
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 441 VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 441 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..+.++...|...+++++|.+.|+++++..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467778888999999999999999999999976 4788999999999999999999987653
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=2e-10 Score=119.04 Aligned_cols=292 Identities=13% Similarity=0.070 Sum_probs=192.8
Q ss_pred HHHHHHHH--hCCCcchHHHHHHHHHhCCCCCCH-hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 045672 43 LDDFTRFC--YQRDLPRAMKAMHAMQCHGVRADS-VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMH 119 (643)
Q Consensus 43 ~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 119 (643)
..+..+.. ..|+++.|.+.+.+..+. .|+. ..+.....+....|+.+.|.+.+....+....+...+.-.....+
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 34444443 489999999999888765 3443 334555677788899999999999998765433334555568888
Q ss_pred HcCCChhHHHHHHccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHH
Q 045672 120 VKFSLLEEAQVLFDQMPE--R-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHC 196 (643)
Q Consensus 120 ~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 196 (643)
...|+++.|...++.+.+ | +...+..+...+.+.|++++|.+++..+.+.++.+. ..+..+-.
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~------------- 229 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQ------------- 229 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHH-------------
Confidence 899999999999999876 3 566788999999999999999999999998864332 22211100
Q ss_pred HHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 045672 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273 (643)
Q Consensus 197 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 273 (643)
..+..++..-......+...+..+..++ +++..+..+...+...|+.++|.+.+++..+. .||.
T Consensus 230 -----------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~ 296 (409)
T TIGR00540 230 -----------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDD 296 (409)
T ss_pred -----------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCc
Confidence 0111112111222334455556666654 37788888899999999999999999998885 3443
Q ss_pred HHHH-HHHHH--HhcCChhHhHHHHHHHHhh-cCCch--hHHhHHHHHHHhcCCHHHHHHHHhh--c--CCCChhhHHHH
Q 045672 274 STLT-SVLRA--CTGLALLELGTQVHVHVLK-YDHDL--ILNNALLDMYCKCGSLEDAMSVFSR--M--IQKDVISWSTM 343 (643)
Q Consensus 274 ~t~~-~ll~a--~~~~~~~~~a~~i~~~~~~-~~~~~--~~~~~Li~~y~~~g~~~~A~~~~~~--m--~~~~~~~~~~l 343 (643)
.... .++.. ....++.+.+.+..+...+ .+.+. ....++...+.+.|++++|.+.|+. . ..|+...+..+
T Consensus 297 ~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 297 RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred ccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 3210 01121 1233555666666666665 44444 4556666777777777777777772 3 24555556666
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 045672 344 ISGLAQNGYSQEALKLFESM 363 (643)
Q Consensus 344 i~~~~~~g~~~~A~~l~~~m 363 (643)
...+.+.|+.++|.++|++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 66677777777777776654
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=9.1e-11 Score=112.95 Aligned_cols=420 Identities=14% Similarity=0.124 Sum_probs=275.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHH-HHHHHHHHcCCChhHHHHHHccCCC--C------CcchHHHHHHH
Q 045672 79 ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV-NILLNMHVKFSLLEEAQVLFDQMPE--R------NVVSWTTMISA 149 (643)
Q Consensus 79 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~f~~m~~--~------~~~~~~~li~~ 149 (643)
.|.+-|.......+|...++-+++...-|+.-.. -.+.+.|.+...+..|.+.++.... | .+...+.+--.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 3444555666778899889888887666665332 2355678888899999998865432 1 22345666667
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH---HHHHHHHHh------------CCCCchhHHHHHH
Q 045672 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKV------------GFESDVFVRSALI 214 (643)
Q Consensus 150 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~---~~~~~~~~~------------g~~~~~~~~~~li 214 (643)
|.+.|+++.|+..|+...+. .|+-.+--.++-.+-..++.+ +.+..++.. .-.|+....|.-|
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 88999999999999998866 677665444444444455555 444444432 1234444333333
Q ss_pred HH-----HHHcCC--HHHH----HHHHhhCCCCCcc---hHH------------------HHHHHHHhCCChhHHHHHHH
Q 045672 215 DI-----YAKLGE--LRNA----ECVFNEMPTRDLV---VWN------------------SIIGGFAQNSDVDEALNLYK 262 (643)
Q Consensus 215 ~~-----y~~~g~--~~~A----~~~f~~~~~~~~~---~~~------------------~li~~~~~~g~~~~A~~~~~ 262 (643)
.. .-+.+. -+++ .++..-+..|+-. -|. .-...|.++|+++.|+++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 21 111111 1111 1222222223211 010 11235789999999999998
Q ss_pred HHHHcCCCCCHH--HHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhh
Q 045672 263 RMKRAGFAADQS--TLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339 (643)
Q Consensus 263 ~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~ 339 (643)
-+.+..-+.-.. +-.+++.-.....++..|.++-+.++. ..-+....+.-.+.-...|++++|.+.+++....|...
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc 523 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC 523 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH
Confidence 887653322221 222233333334567777777666665 22222222222333446799999999999998877665
Q ss_pred HHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 340 WSTMI---SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 340 ~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
-.++. ..+-..|+.++|++.|-++..- +..+...+..+.+.|.-..+..+|++++..... -++.|+...+.|.+
T Consensus 524 ~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~d 600 (840)
T KOG2003|consen 524 TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHH
Confidence 44443 3467789999999999887542 244566777888889889999999999877765 56668899999999
Q ss_pred HHHhcCCHHHHHHHHHh-CCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHH
Q 045672 417 LLGRAGKLQEAVKLIHE-MPYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~-m~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 494 (643)
.|-+.|+-.+|.+..-. ...- -+..+..-|..-|....-.++|+..|+++--+.|+....-..++.++.+.|++..|.
T Consensus 601 lydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred HhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHH
Confidence 99999999999886533 3322 355555556666777788899999999999999987666667777888999999999
Q ss_pred HHHHHHHhC
Q 045672 495 EVRKTMRAR 503 (643)
Q Consensus 495 ~~~~~m~~~ 503 (643)
++++...++
T Consensus 681 d~yk~~hrk 689 (840)
T KOG2003|consen 681 DLYKDIHRK 689 (840)
T ss_pred HHHHHHHHh
Confidence 999988654
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1.9e-11 Score=123.84 Aligned_cols=272 Identities=15% Similarity=0.136 Sum_probs=153.2
Q ss_pred CHHHHHHHHhhCCC--CCc-chHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcCChhHhHHHHH
Q 045672 222 ELRNAECVFNEMPT--RDL-VVWNSIIGGFAQNSDVDEALNLYKRMKRAG--FAADQSTLTSVLRACTGLALLELGTQVH 296 (643)
Q Consensus 222 ~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 296 (643)
+..+|...|..+++ .|+ .....+..+|...+++++|.++|+...+.. ..-+...|.+++--+-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45667777776554 232 233445667777777777777777766531 111344555555332111 111111
Q ss_pred -HHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045672 297 -VHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD---VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371 (643)
Q Consensus 297 -~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 371 (643)
+.+++ .+..+.+|.++.+.|.-+++.+.|.+.|++..+-| ..+|+.+..-+.....+|+|...|+..+. +.|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 11122 44455666666666666677777777666665433 34555555556666666666666666553 2333
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 045672 372 -YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALL 447 (643)
Q Consensus 372 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 447 (643)
...|..+...|.+.+.++.|+-.|+++.+ +.| +.....++...+.+.|+.++|+.+++++ ...| |+..---..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 33455555666666666666666666653 344 3444555556666666666676666665 2222 222222233
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..+...+++++|+..++++.++-|++...|..++.+|.+.|+.+.|..-|.-|.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 4455566666666666666666666666666666666666666666666555543
No 43
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=2.1e-10 Score=119.40 Aligned_cols=451 Identities=13% Similarity=0.085 Sum_probs=269.4
Q ss_pred CCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCC------------------------CCCCHhhHHHHHHHHHccCCH
Q 045672 35 ITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHG------------------------VRADSVTYAELIKCCLARHAV 90 (643)
Q Consensus 35 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------------------------~~p~~~~~~~ll~~~~~~~~~ 90 (643)
..||-+||.++|..||..|+.+.|- +|.-|+-.. -.|.+.||..|+.+|...||+
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDl 99 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDL 99 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccch
Confidence 4677799999999999999999988 776665321 145678999999999999986
Q ss_pred HH---HHHHHHHHH----HcCC-----------------CCchhHHHHHHHHHHcCCChhHHHHHHccCC----------
Q 045672 91 EE---AKLVHNHVL----SGGF-----------------EPETFLVNILLNMHVKFSLLEEAQVLFDQMP---------- 136 (643)
Q Consensus 91 ~~---a~~~~~~~~----~~g~-----------------~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---------- 136 (643)
.. .++.+..+. ..|. -||.. ..+......|-++.+.+++..+|
T Consensus 100 i~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~p~~v 176 (1088)
T KOG4318|consen 100 ILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV 176 (1088)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH
Confidence 54 333222221 1221 12221 12222333455555555554443
Q ss_pred ------------------------CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH
Q 045672 137 ------------------------ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192 (643)
Q Consensus 137 ------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 192 (643)
.++..+|.+++..-..+|+.+.|..++.+|.+.|+..+..-|-.+|-+-....-++
T Consensus 177 fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g~~~~q~~e 256 (1088)
T KOG4318|consen 177 FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLGINAAQVFE 256 (1088)
T ss_pred HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhcCccchHHH
Confidence 16778899999999999999999999999999999999998888887744444445
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCC-----Chh-----HHHHHHH
Q 045672 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS-----DVD-----EALNLYK 262 (643)
Q Consensus 193 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g-----~~~-----~A~~~~~ 262 (643)
.+...|...|+.|+..|+.-.+-.....|....+... .+....+++-..+-+-+| +.+ -....+.
T Consensus 257 ~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k 331 (1088)
T KOG4318|consen 257 FVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTK 331 (1088)
T ss_pred HHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhh
Confidence 8888899999999999998887777776553332222 122222222222222233 111 1112222
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-----cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCCh
Q 045672 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-----YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337 (643)
Q Consensus 263 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-----~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~ 337 (643)
+..-.|+......|.. ..-....|.-+...++-..+.. .+.++..+..++.-|. .+...+..
T Consensus 332 ~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF------------rr~e~~~~ 398 (1088)
T KOG4318|consen 332 KLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF------------RRIERHIC 398 (1088)
T ss_pred HHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH------------HHHHhhHH
Confidence 2222344443333322 2222345666666666666554 2223334444444443 33322211
Q ss_pred h-hHHHHHHHHHh---cC------------CHHHHHHHHHHHHH----CCCCC-------CHHHHHHHHHHHhccCCHHH
Q 045672 338 I-SWSTMISGLAQ---NG------------YSQEALKLFESMKV----SRIKP-------NYITIVGVLFACSHAGFVED 390 (643)
Q Consensus 338 ~-~~~~li~~~~~---~g------------~~~~A~~l~~~m~~----~g~~p-------~~~t~~~ll~a~~~~g~~~~ 390 (643)
. .++ .-.+... .. +...++.-+..... .-+.| =...-+.++..|+..-+..+
T Consensus 399 ~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK 477 (1088)
T KOG4318|consen 399 SRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLK 477 (1088)
T ss_pred HHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 1111111 11 11112211111100 00111 11223445555655555566
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045672 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP-----YEPDAVTWRALLGACKVHRNTDLAICAAKK 465 (643)
Q Consensus 391 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 465 (643)
++..-+.... +-+ ...|..||+.+....+.++|..+.++.. +.-|..-+..+.+...+++....+..++++
T Consensus 478 ~l~~~ekye~-~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 478 ILCDEEKYED-LLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHH-HHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 6544444333 122 2578999999999999999999999883 223455677888889999999999999988
Q ss_pred HHhc---CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCcCCceeE
Q 045672 466 ILNL---DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSW 513 (643)
Q Consensus 466 ~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 513 (643)
+.+. .|.-..+..-+.+.-...|+.+...++++-+...|+.. .+..|
T Consensus 554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 8763 24445566778888899999999999999999988875 34455
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1e-09 Score=106.48 Aligned_cols=284 Identities=13% Similarity=0.122 Sum_probs=203.5
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC---CCc-chHHHHHHHHHhCCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhcC
Q 045672 213 LIDIYAKLGELRNAECVFNEMPT---RDL-VVWNSIIGGFAQNSDVDEALNLYKRMKRAGF--AADQSTLTSVLRACTGL 286 (643)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~~---~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~ 286 (643)
+..+|-...+.+++..-.+.... ++. ..-+....+.-.+.++++|+.+|+++.+... --|..||+.++-.-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 44455555556665555444433 121 1122222333445778888888888877621 11556777776554333
Q ss_pred ChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045672 287 ALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESM 363 (643)
Q Consensus 287 ~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m 363 (643)
..+.---+....+ ..-.+.+...+.+-|+-.++.++|...|++..+- ....|+.|..-|....+...|++-++..
T Consensus 313 skLs~LA~~v~~i--dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 313 SKLSYLAQNVSNI--DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHHHHh--ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 3222211111122 2233456677888889999999999999988654 4568999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHH
Q 045672 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP--YEPDAV 441 (643)
Q Consensus 364 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~ 441 (643)
++-. +-|...|-.|..+|.-.+...-|+-+|++..+ --+-|...|.+|.+.|.+.++.++|++-|.+.- -..+..
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 8843 44678999999999999999999999999876 334478899999999999999999999998872 223457
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILN-------LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
.+..|...+.+.++.++|...+++.++ .+|+...+..-|+.-+.+.+++++|..+-....
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 888999999999999999999999886 334444556668888999999999998776554
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.40 E-value=1.8e-12 Score=127.55 Aligned_cols=247 Identities=16% Similarity=0.176 Sum_probs=87.3
Q ss_pred HHHHhchhhHHHHHHHHH---HhC-CCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhCCCh
Q 045672 182 LRACDSLIILRQLHCGII---KVG-FESDVFVRSALIDIYAKLGELRNAECVFNEMPTR---DLVVWNSIIGGFAQNSDV 254 (643)
Q Consensus 182 l~a~~~~~~~~~~~~~~~---~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~ 254 (643)
-..+...|+.+.....+. ... ...|...+..+.......++++.|.+.++++... ++..+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 344556677774444442 222 2445666677777888899999999999999764 34456666666 788999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC-
Q 045672 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI- 333 (643)
Q Consensus 255 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~- 333 (643)
++|.+++....+.. ++...+.. ++..|.+.|+++++..+++.+.
T Consensus 94 ~~A~~~~~~~~~~~--~~~~~l~~---------------------------------~l~~~~~~~~~~~~~~~l~~~~~ 138 (280)
T PF13429_consen 94 EEALKLAEKAYERD--GDPRYLLS---------------------------------ALQLYYRLGDYDEAEELLEKLEE 138 (280)
T ss_dssp -----------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH
T ss_pred cccccccccccccc--cccchhhH---------------------------------HHHHHHHHhHHHHHHHHHHHHHh
Confidence 99999987765542 33334433 3444555666666666665542
Q ss_pred ----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 045672 334 ----QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408 (643)
Q Consensus 334 ----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 408 (643)
..+...|..+...+.+.|+.++|++.+++..+. .|+ ......++..+...|+.+++.+++....+. .+.+.
T Consensus 139 ~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~ 214 (280)
T PF13429_consen 139 LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDP 214 (280)
T ss_dssp -T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSC
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHH
Confidence 235566777777777788888888888877764 454 556667777777778888777777777663 24555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 409 EHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
..+..+..+|...|+.++|...+++. ...| |......+..++...|+.++|..+.+++.+
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66777777788888888888887776 2234 555666677777888888888877776654
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.1e-09 Score=105.92 Aligned_cols=457 Identities=12% Similarity=0.013 Sum_probs=288.3
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 045672 37 RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116 (643)
Q Consensus 37 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 116 (643)
-+..-+-.+.+-+..+.++.-|+-+-++....+ -|+...--+.+++.-.|+.+.|..+...-.- ...|........
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL~~ 89 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYLAA 89 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHHHH
Confidence 344456666667777778888887777776544 4444455577788777888887776654422 235667777778
Q ss_pred HHHHcCCChhHHHHHHccCCC---------CCc-------chH-----HHHHHHHHhCCChhHHHHHHHHHHH---CCCC
Q 045672 117 NMHVKFSLLEEAQVLFDQMPE---------RNV-------VSW-----TTMISAYCDAKMNDKALELLIFMLR---EGVR 172 (643)
Q Consensus 117 ~~~~~~g~~~~A~~~f~~m~~---------~~~-------~~~-----~~li~~~~~~g~~~~A~~~~~~m~~---~g~~ 172 (643)
.++.+..++++|..++..-+. .|. ..+ +.-.+.|.-.|+.-.|++-+.+... .++.
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~ 169 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL 169 (611)
T ss_pred HHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence 888888999999999884321 110 001 1122233333444333333333221 1123
Q ss_pred CChhhHHHHHHHHhchhhHH-HHHHHHHHhC----CCCchhHHHHHHHHHHHcCCHHHHHHHHh--hC--CCCCcchHHH
Q 045672 173 PNMFTYSAVLRACDSLIILR-QLHCGIIKVG----FESDVFVRSALIDIYAKLGELRNAECVFN--EM--PTRDLVVWNS 243 (643)
Q Consensus 173 p~~~t~~~ll~a~~~~~~~~-~~~~~~~~~g----~~~~~~~~~~li~~y~~~g~~~~A~~~f~--~~--~~~~~~~~~~ 243 (643)
.|...|..+...-...--.. +-+..+.... ...+......+...+.-...-+++...-. .+ .+.++...-.
T Consensus 170 ~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~ 249 (611)
T KOG1173|consen 170 ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAE 249 (611)
T ss_pred cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHH
Confidence 34433333322111000000 1111111100 00111111111111100000000000000 00 0123344445
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCH
Q 045672 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSL 322 (643)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~ 322 (643)
-..-+-..+++.+.++++....+.. ++....+..-|..+...|+...-..+-..+++ .|....+|-++.-.|.-.|+.
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCc
Confidence 5566778899999999999988753 44444454455566777776666666566666 788889999999999999999
Q ss_pred HHHHHHHhhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 045672 323 EDAMSVFSRMIQKD---VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399 (643)
Q Consensus 323 ~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 399 (643)
.+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+.-+.--|...++...|.++|....
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999875444 358999999999999999999998877553 11122223334445788899999999998886
Q ss_pred HhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045672 400 KFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEMP--------YEP-DAVTWRALLGACKVHRNTDLAICAAKKILNL 469 (643)
Q Consensus 400 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 469 (643)
++-| |+...+-+.-.....+.+.+|...|+..- ..+ -..+|+.|..+|++.+.+++|+..+++.+.+
T Consensus 408 ---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 408 ---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred ---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 4555 56677777666777889999999887651 111 3456788889999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 470 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
.|.++.+|.+++-+|...|+++.|.+.|.+..-
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999988764
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=1.4e-10 Score=117.60 Aligned_cols=256 Identities=16% Similarity=0.151 Sum_probs=206.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCC------CCcchHHHHHHHHHhCCChhHHHHHHH-HHHHcCCCCCHHHHHHHH
Q 045672 208 FVRSALIDIYAKLGELRNAECVFNEMPT------RDLVVWNSIIGGFAQNSDVDEALNLYK-RMKRAGFAADQSTLTSVL 280 (643)
Q Consensus 208 ~~~~~li~~y~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll 280 (643)
.+..-+..+|...+++++|+++|+.+.+ .+...|.+.+-.+-+ +-++..+. .+.+. -+-.+.||.++.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~-~~~sPesWca~G 428 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDT-DPNSPESWCALG 428 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhh-CCCCcHHHHHhc
Confidence 5556688899999999999999999875 366788887765533 22333332 33332 244678999999
Q ss_pred HHHhcCChhHhHHHHHHHHhhcCC-chhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHH---HHHHHHhcCCHHHH
Q 045672 281 RACTGLALLELGTQVHVHVLKYDH-DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST---MISGLAQNGYSQEA 356 (643)
Q Consensus 281 ~a~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~---li~~~~~~g~~~~A 356 (643)
+.++-+++.+.|.+.|.++++++| ...+|+.+..-+.....+|.|...|+.....|+..||+ +...|.+.++++.|
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~A 508 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFA 508 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHH
Confidence 999999999999999999999655 78999999999999999999999999998877776665 56789999999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 357 LKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 357 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
+-.|++..+ +.|. .+....+...+-+.|+.++|+++++++.. +.| |+..---.+..+...+++++|+..++++
T Consensus 509 e~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 509 EFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred HHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 999999987 5565 56666777788899999999999999875 333 4444444567788899999999999998
Q ss_pred -CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 435 -PYEPDAV-TWRALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 435 -~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
.+.|+.. ++..+...|.+.|+.+.|+.-|.-+.+++|.-
T Consensus 584 k~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 584 KELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 4557655 56666677999999999999999999999974
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=1.5e-09 Score=112.43 Aligned_cols=250 Identities=11% Similarity=-0.014 Sum_probs=126.0
Q ss_pred HHHHHcCCHHHHHHHHhhCCC--CCc--chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhH
Q 045672 215 DIYAKLGELRNAECVFNEMPT--RDL--VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290 (643)
Q Consensus 215 ~~y~~~g~~~~A~~~f~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 290 (643)
.++.+.|+.+.|.+.|.+..+ |+. ...-.....+.+.|++++|.+.++.+.+.. +-+......+..++...|+++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence 445556666666666665422 222 122233555566666666666666666653 223344555555555666666
Q ss_pred hHHHHHHHHhh-cCCchhHH--------hHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHH
Q 045672 291 LGTQVHVHVLK-YDHDLILN--------NALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALK 358 (643)
Q Consensus 291 ~a~~i~~~~~~-~~~~~~~~--------~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 358 (643)
.+.+.+....+ ...+...+ ..+++.-......+...+.++..++ .+...+..+...+...|+.++|.+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 205 ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 66665555555 11111111 1111111122223344444444443 366667777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh--
Q 045672 359 LFESMKVSRIKPNYITI---VGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE-- 433 (643)
Q Consensus 359 l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-- 433 (643)
++++..+. .||.... ..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+.
T Consensus 285 ~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~ 362 (409)
T TIGR00540 285 IIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA 362 (409)
T ss_pred HHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence 77777664 3443311 1111112233555566666655554311111113444555556666666666666652
Q ss_pred C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045672 434 M-PYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467 (643)
Q Consensus 434 m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 467 (643)
. ...||...+..+...+.+.|+.++|.+++++.+
T Consensus 363 a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 363 ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 334555555555555556666666666665544
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=2.3e-07 Score=90.66 Aligned_cols=438 Identities=11% Similarity=0.077 Sum_probs=256.8
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 045672 37 RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116 (643)
Q Consensus 37 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 116 (643)
-++..|-..-+-=..++++..|..+|++.+.-+ ..+...|..-+.+=.+...+..|+.+++..+..-+..|. .|-.-+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHH
Confidence 356678777777777889999999999988654 346666777777777888899999999988886433333 344445
Q ss_pred HHHHcCCChhHHHHHHccCCC--CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH--
Q 045672 117 NMHVKFSLLEEAQVLFDQMPE--RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR-- 192 (643)
Q Consensus 117 ~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-- 192 (643)
-+=-..|++..|+++|+.-.+ |+...|++.|..-.+.+.++.|..+|++.+- +.|+..+|.--.+--.+.|...
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence 555567889999999987654 8888999999988888999999999998874 3688777766555433444333
Q ss_pred -HHHHHHHHh-CC-CCchhHHHHHHHHHHHcCCHHHHHHHHhhC----CCC-CcchHHHHHHHHHhCCChh---HHHHH-
Q 045672 193 -QLHCGIIKV-GF-ESDVFVRSALIDIYAKLGELRNAECVFNEM----PTR-DLVVWNSIIGGFAQNSDVD---EALNL- 260 (643)
Q Consensus 193 -~~~~~~~~~-g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~----~~~-~~~~~~~li~~~~~~g~~~---~A~~~- 260 (643)
.++...++. |- ..+...+.+....=.++..++.|.-+|+-. +.. ....|......--+-|+.. +++--
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 555544433 21 112334445555555666777777776433 322 1223333333333334432 22211
Q ss_pred ----HHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCch-------hHHhH---HHHHHHhcCCHHHH
Q 045672 261 ----YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDL-------ILNNA---LLDMYCKCGSLEDA 325 (643)
Q Consensus 261 ----~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~-------~~~~~---Li~~y~~~g~~~~A 325 (643)
++.+++.+ +-|-.++-..+..-...|+.+...++++.++. ++|-. .+|-- .+-.=....+++.+
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 22233322 33455555556666666666666666666666 44421 11110 11111235566666
Q ss_pred HHHHhhcCC---CChhhHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 045672 326 MSVFSRMIQ---KDVISWSTM----ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398 (643)
Q Consensus 326 ~~~~~~m~~---~~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 398 (643)
+++|+...+ ....|+.-+ ..--.++.+...|.+++-..+ |.-|-..+|...+..=.+.++++.+..+++..
T Consensus 386 r~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 386 RQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666655422 223333332 222334556666666666554 34566666666666666666666666666666
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP----DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 399 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
.+- + +-+..+|......=...|+.+.|..+|+-+-.+| -...|.+.|+--...|.++.|..+++++++..+...
T Consensus 464 le~-~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 464 LEF-S-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred Hhc-C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 651 1 2245556666655566666666666666552223 234566666666666666667766666666555433
Q ss_pred chHHHHHHHH
Q 045672 475 GTYILLSNIY 484 (643)
Q Consensus 475 ~~~~~l~~~~ 484 (643)
.+.+.+..-
T Consensus 542 -vWisFA~fe 550 (677)
T KOG1915|consen 542 -VWISFAKFE 550 (677)
T ss_pred -HHHhHHHHh
Confidence 555544443
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=6.7e-09 Score=99.56 Aligned_cols=297 Identities=13% Similarity=0.058 Sum_probs=217.5
Q ss_pred HHHHHHHh--CCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 045672 44 DDFTRFCY--QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK 121 (643)
Q Consensus 44 ~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 121 (643)
.+..+..+ .|+|..|.++..+-.+.+-.| ...|.....+.-..|+.+.+-+.+.++.+.-..++..+.-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34555544 799999999999988776333 445777778888999999999999999887556777788888889999
Q ss_pred CCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHH
Q 045672 122 FSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGI 198 (643)
Q Consensus 122 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~ 198 (643)
.|+++.|+.-.++..+ ++.........+|.+.|++.+...+...|.+.|+--|...-..
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l------------------ 227 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL------------------ 227 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH------------------
Confidence 9999999987776554 6778899999999999999999999999999886544321110
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 045672 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275 (643)
Q Consensus 199 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 275 (643)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+-.
T Consensus 228 -------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~- 299 (400)
T COG3071 228 -------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC- 299 (400)
T ss_pred -------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH-
Confidence 112333444444444444444455666654 356677788888999999999999999988887777622
Q ss_pred HHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCC
Q 045672 276 LTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI--QKDVISWSTMISGLAQNGY 352 (643)
Q Consensus 276 ~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~ 352 (643)
.+-.+.+.++.+.-.+..+.-.+ .+.+...+.+|...|.+.+.+.+|...|+... .++..+|+-+..+|.+.|+
T Consensus 300 ---~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 300 ---RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGE 376 (400)
T ss_pred ---HHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCC
Confidence 22345566666666666666665 66666778888888888888888888888663 4677788888888888888
Q ss_pred HHHHHHHHHHHHHCCCCC
Q 045672 353 SQEALKLFESMKVSRIKP 370 (643)
Q Consensus 353 ~~~A~~l~~~m~~~g~~p 370 (643)
..+|.+.+++....-..|
T Consensus 377 ~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 377 PEEAEQVRREALLLTRQP 394 (400)
T ss_pred hHHHHHHHHHHHHHhcCC
Confidence 888888887765433333
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.5e-08 Score=99.21 Aligned_cols=405 Identities=13% Similarity=0.033 Sum_probs=264.5
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHH
Q 045672 43 LDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD-SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE-TFLVNILLNMHV 120 (643)
Q Consensus 43 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~ 120 (643)
-+.-+-|.++|.|++|++.|.+..+. .|| +.-|.....+|...|++++..+--...++.+ |+ +..+..-.+++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence 33445677899999999999999875 677 6678888888889999999988888887753 43 345666667777
Q ss_pred cCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHH--------HHH-C--CCCCChhhHHHHHHHHhchh
Q 045672 121 KFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF--------MLR-E--GVRPNMFTYSAVLRACDSLI 189 (643)
Q Consensus 121 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~-~--g~~p~~~t~~~ll~a~~~~~ 189 (643)
..|++++|+. -+|-.++..+|....-..-+.+++.+ -.. . .+.|+.....+.+..+-..-
T Consensus 195 ~lg~~~eal~---------D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALF---------DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHH---------hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 7888887753 12333444444333332233333322 111 1 23455544444443321100
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHHcC-CHHHHHHHHhhC-------CCCC---------cchHHHHHHHHHhCC
Q 045672 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLG-ELRNAECVFNEM-------PTRD---------LVVWNSIIGGFAQNS 252 (643)
Q Consensus 190 ~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~f~~~-------~~~~---------~~~~~~li~~~~~~g 252 (643)
...+...+-..|...-..+=..|.... .+..|...+.+- ...+ ..+.......+.-.|
T Consensus 266 -----~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g 340 (606)
T KOG0547|consen 266 -----KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKG 340 (606)
T ss_pred -----cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcC
Confidence 000000011112222222222222211 234444333221 1111 122222233345578
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhh
Q 045672 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSR 331 (643)
Q Consensus 253 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 331 (643)
+.-.|.+.|+..+.....++. .|.-+..+|....+.++..+.|..+.+ .+.+..+|..-..++.-.+++++|..=|++
T Consensus 341 ~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred CchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999886544433 277777888999999999999999999 666778888888888889999999999998
Q ss_pred cCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-
Q 045672 332 MIQK---DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG- 407 (643)
Q Consensus 332 m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 407 (643)
.+.- ++..|-.+..+.-+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|+..++ +.|+
T Consensus 420 ai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~ 495 (606)
T KOG0547|consen 420 AISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPRE 495 (606)
T ss_pred HhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hcccc
Confidence 8654 4556666666667788999999999999875 444467888888899999999999999999876 3443
Q ss_pred --------hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 408 --------REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 408 --------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
+.+--+++-.- -.+++.+|.+++++. .+.|. ...+-+|...-.+.|+.++|+++|++...+-.
T Consensus 496 ~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred ccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 11122222222 238999999999988 55553 55788999999999999999999999877543
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=2.2e-09 Score=99.64 Aligned_cols=221 Identities=12% Similarity=0.076 Sum_probs=153.7
Q ss_pred CCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHcCCChhHH
Q 045672 52 QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE---TFLVNILLNMHVKFSLLEEA 128 (643)
Q Consensus 52 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A 128 (643)
+.+.++|.++|.+|.+.+ +.+..+-.+|.+.+.+.|..+.|..+|+.+.++---+. ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 468999999999999754 44556677888889999999999999999987521111 12344566778899999999
Q ss_pred HHHHccCCCCC---cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCC
Q 045672 129 QVLFDQMPERN---VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFES 205 (643)
Q Consensus 129 ~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~ 205 (643)
+.+|..+.+.. ....-.|+..|-+..+|++|++.-+++...+-++.. .-|.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~----~eIA---------------------- 180 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR----VEIA---------------------- 180 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch----hHHH----------------------
Confidence 99999988733 345667899999999999999999999876544332 2211
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045672 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRD---LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282 (643)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 282 (643)
.-|..|...+....+.+.|..++.+..+.| +.+--.+...+...|++++|.+.++...+.+..--+.+...+..+
T Consensus 181 --qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~ 258 (389)
T COG2956 181 --QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYEC 258 (389)
T ss_pred --HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 123345566666778888888888765533 333344566788889999999999888876533333344444444
Q ss_pred HhcCChhHhHHHHHHHHhh
Q 045672 283 CTGLALLELGTQVHVHVLK 301 (643)
Q Consensus 283 ~~~~~~~~~a~~i~~~~~~ 301 (643)
|...|+.+.+...+..+.+
T Consensus 259 Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 5555555554444444444
No 53
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=9.4e-09 Score=100.00 Aligned_cols=254 Identities=14% Similarity=0.115 Sum_probs=200.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcC----CchhHHhHHHHHHHhc
Q 045672 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD----HDLILNNALLDMYCKC 319 (643)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~----~~~~~~~~Li~~y~~~ 319 (643)
+..++-...+.++++.-.......|++.+...-+....+.-+..++++|..+|+.+.+.. .|..+|+.++-.--.+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 344555556788888888888888877666655555666678889999999999999932 3556776665333332
Q ss_pred CCHHH-HHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHH
Q 045672 320 GSLED-AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKS 397 (643)
Q Consensus 320 g~~~~-A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 397 (643)
.++.- |..+ -.+.+--+.|..++.+-|.-.++.++|...|++.++. .|. ...|+.+..-|....+...|.+-++.
T Consensus 313 skLs~LA~~v-~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SKLSYLAQNV-SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHH-HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 22222 2222 2233334456666777888899999999999999884 455 56777788889999999999999999
Q ss_pred hHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 045672 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475 (643)
Q Consensus 398 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 475 (643)
+.+ -.+.|-..|-.|..+|.-.+...-|+-.|++. ..+| |...|.+|...|.+.++.++|+..|.+++..+..+..
T Consensus 390 Avd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 390 AVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 986 23447889999999999999999999999998 5666 7789999999999999999999999999998877788
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 476 TYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 476 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+|..|+++|.+.++.++|...+++-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999988765
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=7.9e-10 Score=105.51 Aligned_cols=196 Identities=13% Similarity=0.020 Sum_probs=161.2
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 382 (643)
...+..+...|...|++++|...|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45567788888999999999999987743 245678888889999999999999999988754 33456777788888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 045672 383 SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAI 460 (643)
Q Consensus 383 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 460 (643)
...|++++|.+.++...+..........+..+...+.+.|++++|.+.+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998873222234556777888999999999999999887 3334 4567888888899999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 461 CAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 461 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..++++++..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999888888888999999999999999999888764
No 55
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.2e-07 Score=95.25 Aligned_cols=435 Identities=13% Similarity=0.111 Sum_probs=268.8
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHH--HHHHH--
Q 045672 44 DDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI--LLNMH-- 119 (643)
Q Consensus 44 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~-- 119 (643)
+=+.-+.++|++++|.+...+++..+ +-|...+..-+-+..+.+.+++|..+.+. .+. ..+++. +=.+|
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHH
Confidence 34567788999999999999999765 55777788888889999999999854432 221 112222 23444
Q ss_pred HcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhchhhHHHHHHHH
Q 045672 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP-NMFTYSAVLRACDSLIILRQLHCGI 198 (643)
Q Consensus 120 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~~~~~~ 198 (643)
-+.+..++|...++.....+..+...-...+.+.|++++|+++|+.+.+.+..- |...-..++.+-+.+ ... .+
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~-~~ 164 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ-LL 164 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH-HH
Confidence 467999999999996655565566667778899999999999999998775432 122222222221111 111 22
Q ss_pred HHhCCCCc--hhHHHHHHHHHHHcCCHHHHHHHHhhC--------CCCCc----------chHHHHHHHHHhCCChhHHH
Q 045672 199 IKVGFESD--VFVRSALIDIYAKLGELRNAECVFNEM--------PTRDL----------VVWNSIIGGFAQNSDVDEAL 258 (643)
Q Consensus 199 ~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~--------~~~~~----------~~~~~li~~~~~~g~~~~A~ 258 (643)
......|+ -..+-...-.+...|++.+|+++++.. .+.|. ..---|.-.+...|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 22222331 122222345677899999999999876 22111 11223555677889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH---HHHhcCChhHh--HHHHHH------------HHhh-cCCchhHHhHHHHHHHhcC
Q 045672 259 NLYKRMKRAGFAADQSTLTSVL---RACTGLALLEL--GTQVHV------------HVLK-YDHDLILNNALLDMYCKCG 320 (643)
Q Consensus 259 ~~~~~m~~~g~~p~~~t~~~ll---~a~~~~~~~~~--a~~i~~------------~~~~-~~~~~~~~~~Li~~y~~~g 320 (643)
+++...++.. .+|........ .+.....++-. ....++ ...+ .......-+.|+.+|. +
T Consensus 245 ~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--n 321 (652)
T KOG2376|consen 245 SIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--N 321 (652)
T ss_pred HHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--h
Confidence 9999998874 44543322221 22222221111 111111 1111 1122233345666665 4
Q ss_pred CHHHHHHHHhhcCCCC-hhhHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHH
Q 045672 321 SLEDAMSVFSRMIQKD-VISWSTMISGL--AQNGYSQEALKLFESMKVSRIKPNY--ITIVGVLFACSHAGFVEDGWNHF 395 (643)
Q Consensus 321 ~~~~A~~~~~~m~~~~-~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 395 (643)
..+.++++-...+... ...+.+++... .+.....+|.+++...-+. .|.. ......+.-....|+++.|.+++
T Consensus 322 k~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 322 KMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5667777776665433 33444444332 2233577888888777654 3443 34444555667899999999999
Q ss_pred H--------HhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCCHHH
Q 045672 396 K--------SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM--------PYEPD-AVTWRALLGACKVHRNTDL 458 (643)
Q Consensus 396 ~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~ 458 (643)
. .+.+ .+..| .+..+++.+|.+.++-+.|..++++. ...+. ..+|.-+...-.++|+.++
T Consensus 400 ~~~~~~~~ss~~~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 400 SLFLESWKSSILE-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHhhhhhhhhhh-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 8 4444 24444 45667888898888877777776654 12222 2234444445567899999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHH
Q 045672 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKT 499 (643)
Q Consensus 459 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 499 (643)
|...++++.+..|++..+...+.-+|++. +.+.|..+-+.
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 99999999999999999999999999875 45566655443
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=5.5e-12 Score=87.16 Aligned_cols=50 Identities=22% Similarity=0.356 Sum_probs=47.5
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 045672 37 RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLA 86 (643)
Q Consensus 37 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 86 (643)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.4e-11 Score=85.05 Aligned_cols=50 Identities=38% Similarity=0.542 Sum_probs=47.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 045672 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384 (643)
Q Consensus 335 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 384 (643)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999875
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=9.4e-09 Score=95.57 Aligned_cols=286 Identities=14% Similarity=0.169 Sum_probs=178.0
Q ss_pred CCChhHHHHHHccCCCCCcchHH---HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHH
Q 045672 122 FSLLEEAQVLFDQMPERNVVSWT---TMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGI 198 (643)
Q Consensus 122 ~g~~~~A~~~f~~m~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~ 198 (643)
.++.++|.++|-+|.+.|..|+. +|.+.|-+.|..+.|+.+-+-+.++ || .|+.--+.+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pd-lT~~qr~lA-------------- 109 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PD-LTFEQRLLA-------------- 109 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CC-CchHHHHHH--------------
Confidence 35778888888888876655543 4667788888888888888887753 33 233322111
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCc---chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 045672 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL---VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275 (643)
Q Consensus 199 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 275 (643)
.-.|..-|...|-+|.|+.+|..+.+.+. .+...|+..|-+..+|++|++.-+++.+.+-.+..+-
T Consensus 110 -----------l~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e 178 (389)
T COG2956 110 -----------LQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE 178 (389)
T ss_pred -----------HHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH
Confidence 22366778888999999999998887433 3566788999999999999999998888765554332
Q ss_pred HHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHhcCC
Q 045672 276 LTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV---ISWSTMISGLAQNGY 352 (643)
Q Consensus 276 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~ 352 (643)
. . ..|.-|...+.-..+++.|..++.+..+.|. ..--.+...+...|+
T Consensus 179 I---A--------------------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 179 I---A--------------------------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD 229 (389)
T ss_pred H---H--------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc
Confidence 1 1 1223344444445566666666665533322 222233455666777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH-H
Q 045672 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL-I 431 (643)
Q Consensus 353 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~ 431 (643)
+++|++.++...+++..--..+...|..+|.+.|+.+++..++..+.+. .++...-..+.+......-.+.|... .
T Consensus 230 y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 230 YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHH
Confidence 7777777777766543323445566677777777777777777766653 34444444444444444444444443 3
Q ss_pred HhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh
Q 045672 432 HEMPYEPDAVTWRALLGACKV---HRNTDLAICAAKKILN 468 (643)
Q Consensus 432 ~~m~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~ 468 (643)
+++.-+|+...+..++..-.. -|...+....++.|+.
T Consensus 307 ~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 307 RQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 445566777777777766432 3345555666666654
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=8.4e-08 Score=99.31 Aligned_cols=395 Identities=15% Similarity=0.106 Sum_probs=246.6
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH
Q 045672 104 GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSA 180 (643)
Q Consensus 104 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 180 (643)
.+..|..+|..|.-+...+|+++.+-+.|++... .....|+.+-..|...|....|..+.+.-....-.|+..+--.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3567888888888889999999999999987764 3456799999999999999999999888765433344333322
Q ss_pred H-HHHHh-chhhHHHHHH---HHHH--hC--CCCchhHHHHHHHHHHHcC-----------CHHHHHHHHhhCCCC---C
Q 045672 181 V-LRACD-SLIILRQLHC---GIIK--VG--FESDVFVRSALIDIYAKLG-----------ELRNAECVFNEMPTR---D 237 (643)
Q Consensus 181 l-l~a~~-~~~~~~~~~~---~~~~--~g--~~~~~~~~~~li~~y~~~g-----------~~~~A~~~f~~~~~~---~ 237 (643)
+ -+.|. +.+..++..+ .++. .+ -......+..+.-+|...- ...++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 23343 3333332111 1111 11 1122333333443443221 123445555554332 3
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHH
Q 045672 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMY 316 (643)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y 316 (643)
+.+---+.--|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++..|..+.+.+.. .+.|-.....-+..-
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 2222223445667788899999888888876566777777777777888888888888888776 444322222222222
Q ss_pred HhcCCHHHHHHHHhhcC-------------------------------CCChh-hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045672 317 CKCGSLEDAMSVFSRMI-------------------------------QKDVI-SWSTMISGLAQNGYSQEALKLFESMK 364 (643)
Q Consensus 317 ~~~g~~~~A~~~~~~m~-------------------------------~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~ 364 (643)
..-++.++|......+. ..|.. ++..+..-....+ +.+..-.. |.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp 634 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LP 634 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-cC
Confidence 22344444433222210 01111 2222221111111 11000000 22
Q ss_pred HCCCCC--C------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 045672 365 VSRIKP--N------YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-P 435 (643)
Q Consensus 365 ~~g~~p--~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 435 (643)
..-+.| + ...|......+...+..++|...+.+..+ ..+-....|......+...|.+++|.+.|... -
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 222222 2 12344455677888899999888877765 23445667777778899999999999988776 5
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 436 YEPD-AVTWRALLGACKVHRNTDLAIC--AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 436 ~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+.|+ +.+..++...+.+.|+...|.. ++..+++++|.++.+|..|+.++.+.|+.++|.+.|+...+-
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 6675 4578888888999999888888 999999999999999999999999999999999999887654
No 60
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.25 E-value=5.3e-09 Score=109.16 Aligned_cols=421 Identities=13% Similarity=0.067 Sum_probs=224.1
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCC
Q 045672 60 KAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139 (643)
Q Consensus 60 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 139 (643)
.++-.+...|+.|+..||.+++.-|+..|+.+.|- +|..|.....+.+..+++.++......|+.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46778888999999999999999999999999998 9999998888888899999999999999888776 788
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHH-HH-------HCCCCCChhhHHHHHHHHhchh-hHH---------HHHHHHHHh
Q 045672 140 VVSWTTMISAYCDAKMNDKALELLIF-ML-------REGVRPNMFTYSAVLRACDSLI-ILR---------QLHCGIIKV 201 (643)
Q Consensus 140 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~a~~~~~-~~~---------~~~~~~~~~ 201 (643)
..+|+.|..+|.+.|+... ++..++ |. ..|+--...-|-..++.|...- +.. .+++..++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999765 333333 22 1233222222322333332211 110 223333332
Q ss_pred C------------------------------------C-CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCc----ch
Q 045672 202 G------------------------------------F-ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL----VV 240 (643)
Q Consensus 202 g------------------------------------~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~----~~ 240 (643)
+ . .|+..++.++++.-...|+++.|..++.+|.++.. .-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 2 1 24444555555555555555555555555554321 11
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcC
Q 045672 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCG 320 (643)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g 320 (643)
|-.++-+ .++...+..+++-|.+.|+.|+..|+..-+-.+...|....+... .+....+++-+..-+-.|
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-------sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-------SQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-------cchhhhhhHHHHHHHhcc
Confidence 1222222 444455555555555555555555555555444443332222111 111111111111111122
Q ss_pred CHHHHHHHHhh---------c-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC-HHHHHHHHHH
Q 045672 321 SLEDAMSVFSR---------M-------IQKDVISWSTMISGLAQNGYSQEALKLFESMKVS--RIKPN-YITIVGVLFA 381 (643)
Q Consensus 321 ~~~~A~~~~~~---------m-------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~-~~t~~~ll~a 381 (643)
..|.+.++. . .+.....|...+. ...+|+.++..++-..|..- ...|+ ...|..++.-
T Consensus 312 --~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq 388 (1088)
T KOG4318|consen 312 --LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ 388 (1088)
T ss_pred --cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH
Confidence 111111111 1 1112233433332 23356666666655555321 11221 2233333332
Q ss_pred Hhcc----------------------CCHHHHHHHHHHhHHh---------------cCCCC-------ChHHHHHHHHH
Q 045672 382 CSHA----------------------GFVEDGWNHFKSMKKF---------------YGIDP-------GREHYSCMIDL 417 (643)
Q Consensus 382 ~~~~----------------------g~~~~a~~~~~~~~~~---------------~~~~p-------~~~~~~~li~~ 417 (643)
|.+. ....+..+......+. ..+.| -...-+.++-.
T Consensus 389 yFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence 2211 1111111111111000 00000 01112334444
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHccCChhHHH
Q 045672 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ---DPGTYILLSNIYANSQKWDEVA 494 (643)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~ 494 (643)
+.+.-+..+++...+.....-=...|..|+.-|..+...+.|....++....+.. +..-+..+.+...+.+...++.
T Consensus 469 l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ 548 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLS 548 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHH
Confidence 4444455555433333210001145788999999999999999999988765422 4457889999999999999999
Q ss_pred HHHHHHHh
Q 045672 495 EVRKTMRA 502 (643)
Q Consensus 495 ~~~~~m~~ 502 (643)
.+.+.|++
T Consensus 549 tiL~e~ks 556 (1088)
T KOG4318|consen 549 TILYEDKS 556 (1088)
T ss_pred HHHhhhhH
Confidence 99999987
No 61
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.25 E-value=3e-07 Score=93.18 Aligned_cols=453 Identities=12% Similarity=0.095 Sum_probs=262.6
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHhC-CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 045672 40 SSLLDDFTRFCYQRDLPRAMKAMHAMQCH-GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118 (643)
Q Consensus 40 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 118 (643)
..|-..+..+..+|+.......|...+.. .+.-....|...++.....+-++.+..++...++.. +...+--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHH
Confidence 45777777777788888888888776643 222234456777777777777777888887776643 2234556667
Q ss_pred HHcCCChhHHHHHHccCCC--------------------------C--------------------C--cchHHHHHHHH
Q 045672 119 HVKFSLLEEAQVLFDQMPE--------------------------R--------------------N--VVSWTTMISAY 150 (643)
Q Consensus 119 ~~~~g~~~~A~~~f~~m~~--------------------------~--------------------~--~~~~~~li~~~ 150 (643)
+++.+++++|.+.+..+.. | | ...|++|...|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 7777777777776665531 1 1 13599999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH--HHHHHHHHhCC-------------------------
Q 045672 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR--QLHCGIIKVGF------------------------- 203 (643)
Q Consensus 151 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~--~~~~~~~~~g~------------------------- 203 (643)
.+.|.+++|.++|++.... .....-|+.+.++++...... ...+.....+.
T Consensus 259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 9999999999999998765 445556777777776544332 11110000111
Q ss_pred ---------CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-------CC--cchHHHHHHHHHhCCChhHHHHHHHHHH
Q 045672 204 ---------ESDVFVRSALIDIYAKLGELRNAECVFNEMPT-------RD--LVVWNSIIGGFAQNSDVDEALNLYKRMK 265 (643)
Q Consensus 204 ---------~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 265 (643)
+-++..|..-+..| .|+..+-..+|.+... +. -..|..+...|-.+|+.+.|..+|.+..
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 11111222222111 2333333333333211 11 1246666677777777777777777665
Q ss_pred HcCCCCC---HHHHHHHHHHHhcCChhHhHHHHHHHHhhcCC-------------------chhHHhHHHHHHHhcCCHH
Q 045672 266 RAGFAAD---QSTLTSVLRACTGLALLELGTQVHVHVLKYDH-------------------DLILNNALLDMYCKCGSLE 323 (643)
Q Consensus 266 ~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-------------------~~~~~~~Li~~y~~~g~~~ 323 (643)
+...+-- ..+|..-...-.+..+++.|..+.+.+..++. +..+|..+++.--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 5322211 12222222223344556666666655543111 1234444455555566677
Q ss_pred HHHHHHhhcCCCChhhHHHHHH---HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh---ccCCHHHHHHHHH
Q 045672 324 DAMSVFSRMIQKDVISWSTMIS---GLAQNGYSQEALKLFESMKVSRIKPNY-ITIVGVLFACS---HAGFVEDGWNHFK 396 (643)
Q Consensus 324 ~A~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~---~~g~~~~a~~~~~ 396 (643)
....+++++.+--+.|=..+++ -+-.+.-++++.++|++-+..=-.|+. ..|+..|.-+. ....++.|+.+|+
T Consensus 495 stk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7777777665433332222221 123455677777777765443234553 24444443332 2347899999999
Q ss_pred HhHHhcCCCCChH--HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 045672 397 SMKKFYGIDPGRE--HYSCMIDLLGRAGKLQEAVKLIHEMP--YEPD--AVTWRALLGACKVHRNTDLAICAAKKILNLD 470 (643)
Q Consensus 397 ~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 470 (643)
...+ +.+|... .|-.....=.+-|....|++++++.. .++. ...||..|.-....=-+..-..+|+++++.-
T Consensus 575 qaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L 652 (835)
T KOG2047|consen 575 QALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL 652 (835)
T ss_pred HHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC
Confidence 9988 6666432 23333333345688889999999883 3332 3468888765444434556778899999988
Q ss_pred CCCc--chHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 471 PQDP--GTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 471 p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
|++- ......+++-.+.|..+.|+.++..-.+
T Consensus 653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 8643 2344567777899999999999976544
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.3e-07 Score=89.18 Aligned_cols=364 Identities=12% Similarity=0.018 Sum_probs=229.8
Q ss_pred chhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHH-HhCC-Ch-hH-------------HHHHHHHHHHCC-
Q 045672 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY-CDAK-MN-DK-------------ALELLIFMLREG- 170 (643)
Q Consensus 108 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~-~~~g-~~-~~-------------A~~~~~~m~~~g- 170 (643)
+...-...+.+|...++-+.|.....+.+..-...-+.|+.+. -+.| +. ++ |++.+.-..+.+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 3344455677777778888888888877764333333333332 2222 11 11 222222222222
Q ss_pred --------------CCCChhhHHHHHHHHhchhhHH-----HHHHHHHH-hCCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q 045672 171 --------------VRPNMFTYSAVLRACDSLIILR-----QLHCGIIK-VGFESDVFVRSALIDIYAKLGELRNAECVF 230 (643)
Q Consensus 171 --------------~~p~~~t~~~ll~a~~~~~~~~-----~~~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 230 (643)
+.|...+...-+.+++..-..+ +....+.. .-++.|+....++.+.|...|+.++|...|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 2233333333344433221111 22222222 245667888899999999999999999999
Q ss_pred hhCCCCCcchHHH---HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCch
Q 045672 231 NEMPTRDLVVWNS---IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDL 306 (643)
Q Consensus 231 ~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~ 306 (643)
++...-|+.+... ..-.+.+.|+.++...+...+.... +-+...|..-+...-...+++.|..+-+..++ .+.+.
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~ 334 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH 334 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc
Confidence 8876544433332 2334567788888888877776532 12222232223333445667777777666666 33344
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcC--C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHH
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRMI--Q-KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL-FAC 382 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~ 382 (643)
..+-.-...+...|+.++|.-.|+... . -+..+|.-++..|...|++.+|.-+-+...+. +..+..++..+. ..|
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL 413 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee
Confidence 444444466677899999999998763 3 36789999999999999999998877765443 334455554442 233
Q ss_pred h-ccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHH
Q 045672 383 S-HAGFVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLGACKVHRNTDLA 459 (643)
Q Consensus 383 ~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a 459 (643)
. ....-++|..++++-.+ +.|+ ....+.+...+.+.|+.+++..++++. ...||...-+.|...+...+.+++|
T Consensus 414 ~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred ccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHH
Confidence 2 33345778888877654 4665 445677788888999999999999876 5668999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcch
Q 045672 460 ICAAKKILNLDPQDPGT 476 (643)
Q Consensus 460 ~~~~~~~~~~~p~~~~~ 476 (643)
+..|..++.++|++..+
T Consensus 491 m~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 491 MEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHhcCccchHH
Confidence 99999999999987543
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=9.9e-09 Score=105.51 Aligned_cols=230 Identities=15% Similarity=0.161 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHhcCChhHhHHHHHHHHhhc--------CCchh-HHhHHHHHHHhcCCHHHHHHHHhhcCC---------
Q 045672 273 QSTLTSVLRACTGLALLELGTQVHVHVLKY--------DHDLI-LNNALLDMYCKCGSLEDAMSVFSRMIQ--------- 334 (643)
Q Consensus 273 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--------~~~~~-~~~~Li~~y~~~g~~~~A~~~~~~m~~--------- 334 (643)
..|...+...|...|+++.|...++.+.+. .+.+. ..+.+...|...+++.+|..+|+++..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666777888888888888888888772 33332 234577888899999999888887721
Q ss_pred -C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC--
Q 045672 335 -K-DVISWSTMISGLAQNGYSQEALKLFESMKV-----SRI-KPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYG-- 403 (643)
Q Consensus 335 -~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 403 (643)
+ -..+++.|..+|.+.|++++|...+++..+ .|. .|. ..-++.+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 234678888889999999998888876532 122 222 23455667788899999999999887766443
Q ss_pred CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC-------CC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045672 404 IDPG----REHYSCMIDLLGRAGKLQEAVKLIHEM-------PY--EPD-AVTWRALLGACKVHRNTDLAICAAKKILNL 469 (643)
Q Consensus 404 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 469 (643)
..++ ..+++.|...|...|++++|.++++++ .. .+. ...++.|..+|.+.+++++|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 357999999999999999999999876 11 222 346777888899999999999999988753
Q ss_pred ----CCCC---cchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 470 ----DPQD---PGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 470 ----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+|+. ..+|..|+.+|...|++++|.++.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4444 45788999999999999999999988863
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=5.5e-08 Score=97.18 Aligned_cols=440 Identities=12% Similarity=0.013 Sum_probs=286.5
Q ss_pred CCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH--HHcCCCCchhH-
Q 045672 35 ITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHV--LSGGFEPETFL- 111 (643)
Q Consensus 35 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~g~~~~~~~- 111 (643)
..|+-.-| +.+++.-.|++++|..+...-.-. +.|..+......++.+...+++|..++... ....+.-+..+
T Consensus 47 ~dp~d~~~--~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~ 122 (611)
T KOG1173|consen 47 NDPADIYW--LAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA 122 (611)
T ss_pred CChHHHHH--HHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh
Confidence 33444444 677888889999998888765432 457777778888888888999998888722 00011111111
Q ss_pred --------------HHHHH-------HHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhC-CChhHHHHHHHHHHHC
Q 045672 112 --------------VNILL-------NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA-KMNDKALELLIFMLRE 169 (643)
Q Consensus 112 --------------~~~li-------~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 169 (643)
.+.-. ..|......++|+..|.+....|+..+.++...-... =..++-.++|+.+.-.
T Consensus 123 ~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a 202 (611)
T KOG1173|consen 123 ANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLA 202 (611)
T ss_pred hceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHH
Confidence 01111 1233334456666666655555555444433221110 0011222222211000
Q ss_pred -CCCCChhhHHHHHHHH-hchhhHH-H-HHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCc---chHH
Q 045672 170 -GVRPNMFTYSAVLRAC-DSLIILR-Q-LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL---VVWN 242 (643)
Q Consensus 170 -g~~p~~~t~~~ll~a~-~~~~~~~-~-~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~ 242 (643)
-.+-+....-.+.... .+..+.. . .-....-.+..-+..+.....+-+...+++.+..++++.+.+.|+ ..+.
T Consensus 203 ~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~ 282 (611)
T KOG1173|consen 203 MLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLP 282 (611)
T ss_pred hhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHH
Confidence 0011122222222111 0000000 0 000011123455666667777888899999999999999887544 4666
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCC
Q 045672 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGS 321 (643)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~ 321 (643)
.-|..+...|+..+-..+=.+|.+. .+-.+.+|-++..-|...|...+|++.+..+.. .+.-...|-.+...|+-.|.
T Consensus 283 ~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~E 361 (611)
T KOG1173|consen 283 LHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGE 361 (611)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcch
Confidence 7788899999999988888888886 355678999999989999999999999999998 44445788899999999999
Q ss_pred HHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHH
Q 045672 322 LEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKS 397 (643)
Q Consensus 322 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 397 (643)
.++|...+....+ ..-..+--+..-|.+.+..+.|.+.|.+... +.|+ +...+-+.-...+.+.+.+|..+|+.
T Consensus 362 hdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~ 439 (611)
T KOG1173|consen 362 HDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQK 439 (611)
T ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHH
Confidence 9999888765522 1111222345568888999999999998876 5565 56666666566678899999999998
Q ss_pred hHHhc-CCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 045672 398 MKKFY-GIDP----GREHYSCMIDLLGRAGKLQEAVKLIHEM-P-YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470 (643)
Q Consensus 398 ~~~~~-~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 470 (643)
....- .+.+ ...+++.|..+|.+.+++++|+..+++. . .+.|..++.++.-.+...|+++.|...|.+++.+.
T Consensus 440 ~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 440 ALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 77310 1111 3446888999999999999999999987 2 33477788888888999999999999999999999
Q ss_pred CCCcchHHHHH
Q 045672 471 PQDPGTYILLS 481 (643)
Q Consensus 471 p~~~~~~~~l~ 481 (643)
|++..+-..|.
T Consensus 520 p~n~~~~~lL~ 530 (611)
T KOG1173|consen 520 PDNIFISELLK 530 (611)
T ss_pred CccHHHHHHHH
Confidence 99865544444
No 65
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.21 E-value=3.6e-08 Score=94.68 Aligned_cols=283 Identities=14% Similarity=0.087 Sum_probs=178.8
Q ss_pred CCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHH
Q 045672 122 FSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGI 198 (643)
Q Consensus 122 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~ 198 (643)
.|++..|+++..+-.+ .....|..-+.+--+.|+.+.+-.++.+..+. .+|
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~--~~~------------------------ 150 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL--AGD------------------------ 150 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc--CCC------------------------
Confidence 4777777777765443 22334444555566667777777777766543 112
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 045672 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP---TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275 (643)
Q Consensus 199 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 275 (643)
++..+.-+........|+++.|..-.++.. .+++........+|.+.|++.+...++..|.+.|.--|+..
T Consensus 151 ------~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 151 ------DTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred ------chHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 233333445666777888888887776544 45778888899999999999999999999998886555432
Q ss_pred HHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCC
Q 045672 276 LTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGY 352 (643)
Q Consensus 276 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 352 (643)
-.. ...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+
T Consensus 225 ~~l--------------------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~ 278 (400)
T COG3071 225 ARL--------------------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGD 278 (400)
T ss_pred HHH--------------------------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCC
Confidence 110 112233444433333334443444555432 245555566666777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 045672 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432 (643)
Q Consensus 353 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 432 (643)
.++|.++..+..+.+..|+. ..+-.+.+.++...-++..+...+.++..| ..+.+|...|.+.+.+.+|.+.|+
T Consensus 279 ~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 279 HDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred hHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777777776666652 222345566666666666666665434333 566677777777777777777777
Q ss_pred hC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 433 EM-PYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 433 ~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
.. +.+|+..+|+-+..++.+.|+.++|.+..++.+.
T Consensus 353 aAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 353 AALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 65 5667777777777777777777777777777664
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.17 E-value=1.1e-08 Score=110.32 Aligned_cols=259 Identities=11% Similarity=0.003 Sum_probs=185.2
Q ss_pred CcchHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHh---------cCChhHhHHHHHHHHhh
Q 045672 237 DLVVWNSIIGGFAQ-----NSDVDEALNLYKRMKRAGFAAD-QSTLTSVLRACT---------GLALLELGTQVHVHVLK 301 (643)
Q Consensus 237 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~---------~~~~~~~a~~i~~~~~~ 301 (643)
+...|...+.+-.. .+..++|+++|++..+. .|+ ...+..+..++. ..++++.|...++.+.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555555555321 23467999999998874 554 344444443332 33558899999999999
Q ss_pred -cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHH
Q 045672 302 -YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--K-DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI-TIV 376 (643)
Q Consensus 302 -~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~ 376 (643)
.+.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+.
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~ 410 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGI 410 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHH
Confidence 566778888899999999999999999998744 3 4567888899999999999999999999885 45532 333
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHc
Q 045672 377 GVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAV-TWRALLGACKVH 453 (643)
Q Consensus 377 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~ 453 (643)
.++..+...|++++|...++++.+. .+| +...+..+...|...|++++|.+.+.++ +..|+.. .++.+...+...
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 3444566789999999999998763 234 4556777888899999999999999887 4445544 445555556777
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 454 RNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 454 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
| +.|...++++++..-..+.....+...|.-.|+-+.+..+ +++.+.|
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7 4788878887764322222223377778888888888777 7777654
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.17 E-value=1.2e-06 Score=89.06 Aligned_cols=423 Identities=13% Similarity=0.122 Sum_probs=269.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhC
Q 045672 75 VTYAELIKCCLARHAVEEAKLVHNHVLSGGF-EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153 (643)
Q Consensus 75 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 153 (643)
..|..-+..+..+|++..-+..|+..+..=+ .....+|...+......|-.+.+..++++-.+-++..-+--|..++..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3466667777888999999999998887521 222346777778777888888999999998887778888899999999
Q ss_pred CChhHHHHHHHHHHHCC------CCCChhhHHHHHHHHhchhhHH--HHHHHHHHhCC--CCc--hhHHHHHHHHHHHcC
Q 045672 154 KMNDKALELLIFMLREG------VRPNMFTYSAVLRACDSLIILR--QLHCGIIKVGF--ESD--VFVRSALIDIYAKLG 221 (643)
Q Consensus 154 g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~~~~~--~~~~~~~~~g~--~~~--~~~~~~li~~y~~~g 221 (643)
+++++|-+.+...+... .+-+...|.-+....++..+.- --.+.+++.|+ -+| ...|++|.+-|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 99999999998876431 2334445555555444443332 11222333333 233 468999999999999
Q ss_pred CHHHHHHHHhhCCCC--CcchHHHHHHHHHh----------------CCC------hhHHHHHHHHHHHcCC--------
Q 045672 222 ELRNAECVFNEMPTR--DLVVWNSIIGGFAQ----------------NSD------VDEALNLYKRMKRAGF-------- 269 (643)
Q Consensus 222 ~~~~A~~~f~~~~~~--~~~~~~~li~~~~~----------------~g~------~~~A~~~~~~m~~~g~-------- 269 (643)
.++.|..+|++.... .+.-++.+..+|++ .|+ ++-.+.-|+.+...+.
T Consensus 263 ~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred hhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 999999999886542 22233333333332 111 2223333443333210
Q ss_pred ---CCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCc------hhHHhHHHHHHHhcCCHHHHHHHHhhcCCCCh--
Q 045672 270 ---AADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHD------LILNNALLDMYCKCGSLEDAMSVFSRMIQKDV-- 337 (643)
Q Consensus 270 ---~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~------~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~-- 337 (643)
+.+..++..-+. ...|+..+-...+..+++ +.|. ...|..+.+.|-..|+++.|+.+|++..+-+-
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 111122222221 223555666677777777 4443 35778899999999999999999999865432
Q ss_pred -----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----------C-CH------HHHHHHHHHHhccCCHHHHHHHH
Q 045672 338 -----ISWSTMISGLAQNGYSQEALKLFESMKVSRIK----------P-NY------ITIVGVLFACSHAGFVEDGWNHF 395 (643)
Q Consensus 338 -----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----------p-~~------~t~~~ll~a~~~~g~~~~a~~~~ 395 (643)
..|-.-...=.++.+++.|+++.+.....--. | -. ..|...+..--..|-++....++
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 24555555566788999999998877542111 1 11 12222333333446666777777
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-C-CC-CCHH-HHHHHHHHHHH---cCCHHHHHHHHHHHHh
Q 045672 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-P-YE-PDAV-TWRALLGACKV---HRNTDLAICAAKKILN 468 (643)
Q Consensus 396 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~-p~~~-~~~~ll~~~~~---~g~~~~a~~~~~~~~~ 468 (643)
+.+..-.-..|- ........+-....++++.+++++- + ++ |++. .|++.+.-+.+ ....+.|..+|+++++
T Consensus 501 driidLriaTPq--ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 501 DRIIDLRIATPQ--IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHhcCCHH--HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 777663122232 2222333455667789999999886 2 22 5554 79988876543 2378999999999999
Q ss_pred cCCCCc--chHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 469 LDPQDP--GTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 469 ~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
.-|+.. ..|...+..-.+-|....|..++++..
T Consensus 579 ~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 579 GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 887532 244445555566788888888888854
No 68
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=3.9e-07 Score=85.87 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=67.3
Q ss_pred HHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCh
Q 045672 46 FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL 125 (643)
Q Consensus 46 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 125 (643)
+.-+..+.++..|+.+++.-...+-.....+-.-+..++...|++++|...+..+.... .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 56677788999999999877654422222333445566678999999999999887754 56677777777777778899
Q ss_pred hHHHHHHccCCC
Q 045672 126 EEAQVLFDQMPE 137 (643)
Q Consensus 126 ~~A~~~f~~m~~ 137 (643)
.+|..+-.+.++
T Consensus 108 ~eA~~~~~ka~k 119 (557)
T KOG3785|consen 108 IEAKSIAEKAPK 119 (557)
T ss_pred HHHHHHHhhCCC
Confidence 999988877764
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.12 E-value=3.1e-08 Score=94.39 Aligned_cols=196 Identities=14% Similarity=0.123 Sum_probs=111.6
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHH
Q 045672 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYC 317 (643)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~ 317 (643)
...+..+...+...|++++|.+.+++..+.. +.+...+..+ ...|.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l---------------------------------a~~~~ 76 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLAL---------------------------------ALYYQ 76 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH---------------------------------HHHHH
Confidence 3567777788888888888888888877642 2233344444 44444
Q ss_pred hcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHH
Q 045672 318 KCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVEDGWN 393 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 393 (643)
..|++++|.+.|++..+ .+...+..+...+...|++++|++.|++.......| ....+..+...+...|++++|..
T Consensus 77 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 77 QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555544421 233345555555566666666666666655432112 22344445555666666666666
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045672 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PY-EPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469 (643)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 469 (643)
.+....+. .+.+...+..+...+...|++++|.+.+++. .. ..+...+..+...+...|+.+.|....+.+...
T Consensus 157 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 157 YLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 66666552 2223445666666666677777776666654 11 223444555555666667777777666665544
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=4e-08 Score=101.09 Aligned_cols=233 Identities=21% Similarity=0.225 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCCC----------Ccc-hHHHHHHHHHhCCChhHHHHHHHHHHHc---CCCCC
Q 045672 207 VFVRSALIDIYAKLGELRNAECVFNEMPTR----------DLV-VWNSIIGGFAQNSDVDEALNLYKRMKRA---GFAAD 272 (643)
Q Consensus 207 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~ 272 (643)
..+...|..+|...|+++.|..+|+...+. .+. ..+.+...|...+++++|..+|+++... ..-++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455566888899999999999888765431 111 2334556677778888888877777542 11111
Q ss_pred HHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC----------CCChh-hHH
Q 045672 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI----------QKDVI-SWS 341 (643)
Q Consensus 273 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~----------~~~~~-~~~ 341 (643)
...+ ..+++.|...|.+.|++++|...+++.. .+.+. .++
T Consensus 279 h~~v-----------------------------a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 279 HPAV-----------------------------AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred CHHH-----------------------------HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 1111 1233445555666666655555554431 12222 355
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C-CCC-Ch
Q 045672 342 TMISGLAQNGYSQEALKLFESMKV---SRIKPN----YITIVGVLFACSHAGFVEDGWNHFKSMKKFY----G-IDP-GR 408 (643)
Q Consensus 342 ~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p-~~ 408 (643)
.++..+...+++++|..+++...+ .-+.++ ..+++.+...|.+.|++++|.++|+++.... + ..+ ..
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 566777788888888888876533 112333 3578888888999999999999998887642 1 112 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 409 EHYSCMIDLLGRAGKLQEAVKLIHEM--------PYEPDA-VTWRALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
..++-|...|.+.+++.+|.++|.+. +..|++ .+|..|...|...|+++.|+++.+.+..
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 46778888899999999888888765 334554 4799999999999999999999999874
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.07 E-value=2.6e-08 Score=107.34 Aligned_cols=210 Identities=13% Similarity=0.049 Sum_probs=162.5
Q ss_pred ChhHhHHHHHHHHhhcCC-chhHHhHHHHHHH---------hcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCH
Q 045672 287 ALLELGTQVHVHVLKYDH-DLILNNALLDMYC---------KCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYS 353 (643)
Q Consensus 287 ~~~~~a~~i~~~~~~~~~-~~~~~~~Li~~y~---------~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 353 (643)
++++.|...++.+.+..| +...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 457899999999999444 4556666665554 23458899999998854 3567888888889999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHH
Q 045672 354 QEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR-EHYSCMIDLLGRAGKLQEAVKLI 431 (643)
Q Consensus 354 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~ 431 (643)
++|+..|++..+. .|+ ...+..+..++...|++++|...++...+. .|+. ..+..+...+...|++++|.+.+
T Consensus 355 ~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 355 IVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999885 455 566777888899999999999999999873 4542 23334455577789999999999
Q ss_pred HhCC--CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 432 HEMP--YEPDA-VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 432 ~~m~--~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
++.- ..|+. ..+..+..++...|+.++|...++++....|.+......+...|...| ++|...++.+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 8872 23544 446666677889999999999999998888887777888888888888 5888888877653
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=8e-09 Score=95.94 Aligned_cols=229 Identities=13% Similarity=0.054 Sum_probs=160.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcC
Q 045672 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCG 320 (643)
Q Consensus 242 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g 320 (643)
+.|..+|.+.|.+.+|.+.|+.-.+. .|-..||..+-.+|.+....+.|..++..... ++.++.........+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 45778888888888888888877775 45556676677777777777777777777666 5556555566666666677
Q ss_pred CHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 045672 321 SLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397 (643)
Q Consensus 321 ~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 397 (643)
+.++|.++++...+. ++.+.-++..+|.-.++++-|+..|+++.+-|+ -+...|..+.-+|.-.+.+|-++.-|..
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 777777777666432 444555555666667777777777777777663 3445566666666666666666555554
Q ss_pred hHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 045672 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477 (643)
Q Consensus 398 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 477 (643)
.... ..+.++| ..+|-.+-......||+..|.+.|+-++..+|++..++
T Consensus 384 Alst-------------------at~~~~a------------aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~eal 432 (478)
T KOG1129|consen 384 ALST-------------------ATQPGQA------------ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEAL 432 (478)
T ss_pred HHhh-------------------ccCcchh------------hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHH
Confidence 4331 1111111 23566565556678999999999999999999999999
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 478 ILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 478 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+.|+-.-.+.|++++|+.+++......
T Consensus 433 nNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 433 NNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999887643
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.03 E-value=7.5e-08 Score=94.96 Aligned_cols=208 Identities=16% Similarity=0.111 Sum_probs=145.0
Q ss_pred hhHhHHHHHHHHhh---cCCc--hhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHH
Q 045672 288 LLELGTQVHVHVLK---YDHD--LILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKL 359 (643)
Q Consensus 288 ~~~~a~~i~~~~~~---~~~~--~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 359 (643)
..+.+..-+..++. ..++ ...+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555555555554 2222 35577778889999999999999988743 3567899999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC--CC
Q 045672 360 FESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM--PY 436 (643)
Q Consensus 360 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~ 436 (643)
|++..+ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+.+. ..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999987 4565 567777888888999999999999998763 454332222223345677899999999654 22
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 437 EPDAVTWRALLGACKVHRNTDLAICAAKKIL-------NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 437 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
.|+...| .+ .....|+...+ ..++.+. ++.|+.+.+|..++.+|.+.|++++|...|++..+.+
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333222 12 22334554433 2334443 3456667789999999999999999999999988755
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.94 E-value=6.1e-07 Score=88.55 Aligned_cols=217 Identities=12% Similarity=0.015 Sum_probs=145.3
Q ss_pred CCChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHH
Q 045672 251 NSDVDEALNLYKRMKRAG-FAAD--QSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAM 326 (643)
Q Consensus 251 ~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~ 326 (643)
.+..+.++.-+.++.... ..|+ ...+......+...|+.+.|...+..+.+ .+.+...++.+...|...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345566666666666432 1222 23455556667777888888888877777 5555678888999999999999999
Q ss_pred HHHhhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 045672 327 SVFSRMIQ--K-DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403 (643)
Q Consensus 327 ~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 403 (643)
..|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|.+.|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99988843 3 4567888888889999999999999998874 55543222222233456789999999977654 2
Q ss_pred CCCChHHHHHHHHHHHhcCCHHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 404 IDPGREHYSCMIDLLGRAGKLQE--AVKLIHEM-PY----EP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 404 ~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
..|+... ..++..+ .|++.+ +.+.+.+. .. .| ....|..+...+...|++++|+..|+++++.+|.+.
T Consensus 195 ~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 LDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 3343322 2333333 444433 33333221 11 12 234788888899999999999999999999997543
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=1.3e-07 Score=84.35 Aligned_cols=163 Identities=17% Similarity=0.142 Sum_probs=136.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 417 (643)
....+.-+|.+.|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|+...+. -+-+..+.|....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHH
Confidence 3455677899999999999999998885 455 668888888899999999999999988762 23356778888888
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHH
Q 045672 418 LGRAGKLQEAVKLIHEMPYEPD----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493 (643)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 493 (643)
+|..|++++|...|++.-..|+ ..+|..+.-+..+.|+.+.|+..+++.++.+|+.+.+...+.....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998832332 447877777778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 045672 494 AEVRKTMRARGI 505 (643)
Q Consensus 494 ~~~~~~m~~~g~ 505 (643)
..+++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999887664
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.92 E-value=2.1e-05 Score=82.39 Aligned_cols=425 Identities=15% Similarity=0.115 Sum_probs=233.1
Q ss_pred HHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcC----
Q 045672 47 TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF---- 122 (643)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---- 122 (643)
..+...|++++|++.++.-... +......+......+.+.|+.++|..++..+++.++ .+..-|..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcccc
Confidence 4557789999999999775432 333455567777888899999999999999999874 3444555555555222
Q ss_pred -CChhHHHHHHccCCC--CCcchHHHHHHHHHhCCChh-HHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHH
Q 045672 123 -SLLEEAQVLFDQMPE--RNVVSWTTMISAYCDAKMND-KALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGI 198 (643)
Q Consensus 123 -g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~ 198 (643)
.+.+....+++++.+ |...+.-.+.-.+.....+. .+...+..+...|+++ +|+.+-..+.......
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~------ 160 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA------ 160 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH------
Confidence 245555666666654 22222222222222222222 3344555566666432 2333333332221111
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCCHHHHHHHH-hh-CCCCCcchH--HHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-H
Q 045672 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVF-NE-MPTRDLVVW--NSIIGGFAQNSDVDEALNLYKRMKRAGFAAD-Q 273 (643)
Q Consensus 199 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f-~~-~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 273 (643)
+...++..|...-........- .. -..|....| .-+...|-..|++++|++++++.++. .|+ .
T Consensus 161 ----------~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ 228 (517)
T PF12569_consen 161 ----------IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLV 228 (517)
T ss_pred ----------HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcH
Confidence 1111222222110000000000 00 011233234 45567777888888888888888775 454 4
Q ss_pred HHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCCh----------hhH--
Q 045672 274 STLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV----------ISW-- 340 (643)
Q Consensus 274 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~----------~~~-- 340 (643)
..|..-...+-+.|++..|....+.+.+ ...|..+-+-.+..+.++|++++|.+++......+. ..|
T Consensus 229 ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 229 ELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 5677777778888888888888888888 566777777788888899999999888877755431 134
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CC-------------CCCHHHHHHHHHHHhccCC-------HHHHHHHHHHh
Q 045672 341 STMISGLAQNGYSQEALKLFESMKVS--RI-------------KPNYITIVGVLFACSHAGF-------VEDGWNHFKSM 398 (643)
Q Consensus 341 ~~li~~~~~~g~~~~A~~l~~~m~~~--g~-------------~p~~~t~~~ll~a~~~~g~-------~~~a~~~~~~~ 398 (643)
.....+|.+.|++..|+.-|....+. .+ +....+|..++...-+... ...|.+++-.+
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l 388 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLEL 388 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 33456788888888888777655331 01 1223344444443322111 12344444444
Q ss_pred HHhcCCCCC-----------hHHHHHHHHHH---HhcCCHHHHHHHHH-----------hC----C--CCCCHHHHHHHH
Q 045672 399 KKFYGIDPG-----------REHYSCMIDLL---GRAGKLQEAVKLIH-----------EM----P--YEPDAVTWRALL 447 (643)
Q Consensus 399 ~~~~~~~p~-----------~~~~~~li~~~---~~~g~~~~A~~~~~-----------~m----~--~~p~~~~~~~ll 447 (643)
......... ..--..+..-- .+...-+++...-. .. + ..||+.-- .|+
T Consensus 389 ~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~Ge-kL~ 467 (517)
T PF12569_consen 389 HDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGE-KLL 467 (517)
T ss_pred hcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHH-HHh
Confidence 321000000 00000000000 01111111111100 00 1 11222211 111
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHH
Q 045672 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 498 (643)
....-.++|.++++-+.+..|++..+|..--.+|.+.|++--|.+-+.
T Consensus 468 ---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~ 515 (517)
T PF12569_consen 468 ---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALK 515 (517)
T ss_pred ---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHH
Confidence 233457889999999999999999999999999999999988887664
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.5e-05 Score=77.09 Aligned_cols=259 Identities=10% Similarity=0.000 Sum_probs=158.0
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHH
Q 045672 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST-LTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLD 314 (643)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~ 314 (643)
|+.....+...+...|+.++|...|++.+. +.|+..+ .....-.+...|+.+....+...+.. ......-|-.-..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ 308 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence 566677777777788888888887777654 2343322 11111223455666665555555544 2222222222223
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHH
Q 045672 315 MYCKCGSLEDAMSVFSRMIQKDVI---SWSTMISGLAQNGYSQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVED 390 (643)
Q Consensus 315 ~y~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~ 390 (643)
.....++++.|..+-++.++-|.. .|-.-...+.+.|+.++|.-.|+..+. +.| +...|..|+.+|...|.+.+
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHH
Confidence 334456677777766666544333 333333456677788888888877765 343 46677788888887888777
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHH-HHHHhc-CCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 045672 391 GWNHFKSMKKFYGIDPGREHYSCMI-DLLGRA-GKLQEAVKLIHEM-PYEPDAV-TWRALLGACKVHRNTDLAICAAKKI 466 (643)
Q Consensus 391 a~~~~~~~~~~~~~~p~~~~~~~li-~~~~~~-g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~ 466 (643)
|.-.-+...+. ++.+..+.+.+. +.+.-. .--++|.+++++. .++|+.. ..+.+...|...|.++.++.++++.
T Consensus 387 A~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 387 ANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 76666555542 333444443331 222211 2235677777665 5667654 4555666678888888888888888
Q ss_pred HhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 467 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+...|++ ...+.|++.+...+.+.+|.+.|.....
T Consensus 465 L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 465 LIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred Hhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 8887755 5788888888888888888888877664
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.89 E-value=4.1e-05 Score=78.38 Aligned_cols=447 Identities=13% Similarity=0.027 Sum_probs=207.8
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 045672 42 LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK 121 (643)
Q Consensus 42 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 121 (643)
|-.++..| ..+++...+++.+..++ +.+-...|.....-.+...|+.++|.......++..+ .+.+.|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhh
Confidence 34444444 23456666666666554 2222333443333334445566666655555554332 233445555444555
Q ss_pred CCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhchhhHH---HH
Q 045672 122 FSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM-FTYSAVLRACDSLIILR---QL 194 (643)
Q Consensus 122 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~---~~ 194 (643)
..++++|.+.|..... .|...|.-+.-.-++.|+++...+.-.++.+. .|.. ..|.....+.--.|+.. .+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666654432 23333333333333444444444433333322 2221 12222222222222222 22
Q ss_pred HHHHHHhC-CCCchhHHHH------HHHHHHHcCCHHHHHHHHhhCCCC--C-cchHHHHHHHHHhCCChhHHHHHHHHH
Q 045672 195 HCGIIKVG-FESDVFVRSA------LIDIYAKLGELRNAECVFNEMPTR--D-LVVWNSIIGGFAQNSDVDEALNLYKRM 264 (643)
Q Consensus 195 ~~~~~~~g-~~~~~~~~~~------li~~y~~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m 264 (643)
.+...+.. -.|+...+.- -.....+.|..++|.+.+...... | ...-.+....+.+.++.++|..++..+
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 22222221 1222222211 112345567777777766655432 2 222334556677778888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHh--cCChhHhHHHHHHHHhhcCCch----hHHhHHHHHHHhcCCHHHHHHHHhhcCCCCh-
Q 045672 265 KRAGFAADQSTLTSVLRACT--GLALLELGTQVHVHVLKYDHDL----ILNNALLDMYCKCGSLEDAMSVFSRMIQKDV- 337 (643)
Q Consensus 265 ~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~i~~~~~~~~~~~----~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~- 337 (643)
+.. .||..-|...+..+. -.+..+....++....+..|.. .+--+++. ...-.+...+++..+.++.+
T Consensus 246 l~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~---~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 246 LER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLN---GEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred Hhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhC---cchhHHHHHHHHHHHhhcCCC
Confidence 775 566666655554444 2233333334555444411110 00001110 01111112222232222222
Q ss_pred hhHHHHHHHHHhcCCHHH----HHHHHHHHHHCC----------CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 045672 338 ISWSTMISGLAQNGYSQE----ALKLFESMKVSR----------IKPNYI--TIVGVLFACSHAGFVEDGWNHFKSMKKF 401 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 401 (643)
..+..+.+.|-.-...+- +..+...+...| -+|... |+..+...+-+.|+++.|..+++....
T Consensus 321 ~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId- 399 (700)
T KOG1156|consen 321 SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID- 399 (700)
T ss_pred chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-
Confidence 122333332222111110 111111111111 134433 333455667778888888888887764
Q ss_pred cCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc---
Q 045672 402 YGIDPG-REHYSCMIDLLGRAGKLQEAVKLIHEMP--YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG--- 475 (643)
Q Consensus 402 ~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--- 475 (643)
..|+ ++.|..=..++...|.+++|..++++.. ..||...-.--..-..+..+.++|.++..+...-+-+-..
T Consensus 400 --HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~ 477 (700)
T KOG1156|consen 400 --HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLA 477 (700)
T ss_pred --cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHH
Confidence 3555 3456666677788888888888887772 2355544434444456677888888877776654421000
Q ss_pred ----hH--HHHHHHHHccCChhHHHHHHHHHH
Q 045672 476 ----TY--ILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 476 ----~~--~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
.| .-=+.+|.++|++-+|++-|..+.
T Consensus 478 ~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 478 EMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 11 223666777777777776555443
No 79
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=1.4e-07 Score=87.96 Aligned_cols=225 Identities=15% Similarity=0.073 Sum_probs=186.1
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHH
Q 045672 206 DVFVRSALIDIYAKLGELRNAECVFNEMPT--RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL-TSVLRA 282 (643)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a 282 (643)
|..--+-+...|.+.|-+.+|++.|+.-.+ +-+.+|-.|-..|.+-.+++.|+.+|.+-.+. .|-.+|+ ......
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 444446788999999999999999988654 56788999999999999999999999988774 5656665 456677
Q ss_pred HhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHH
Q 045672 283 CTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALK 358 (643)
Q Consensus 283 ~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 358 (643)
+...+..+.+.++++.+.+ .+.++.....+...|.-.++++-|.+.++++.+ .+...|+.+.-+|.-.+++|-++.
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHH
Confidence 7888999999999999999 666777777888889999999999999998754 577789999999999999999999
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 359 LFESMKVSRIKPN--YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 359 l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
-|++.+..--.|+ ...|..+-......|++..|.+.|+-... .-....+.++.|.-.-.|.|++++|..+++..
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999887655565 34566676677788999999999988775 33445678888888888999999999988876
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=2.8e-06 Score=80.26 Aligned_cols=403 Identities=13% Similarity=0.066 Sum_probs=236.3
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhH
Q 045672 82 KCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDK 158 (643)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~ 158 (643)
.-+....++..|+.+++.-...+-+-...+--=+..+|.+.|++++|..++.-+.+ ++...|-.|.-.+.-.|.+.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 33445577888888877666544322222222345677899999999999987765 566677778777777899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH---HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC
Q 045672 159 ALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235 (643)
Q Consensus 159 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~---~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 235 (643)
|..+-.+.. -++..-..++...-+.++-+ .+|+.+... ..-.-+|..+..-.-.+.+|.+++.++..
T Consensus 110 A~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887766532 22233334444445555555 444444332 23344566666666678999999999876
Q ss_pred C--CcchHHH-HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--C--Ch----------------hHhH
Q 045672 236 R--DLVVWNS-IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG--L--AL----------------LELG 292 (643)
Q Consensus 236 ~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~--~~----------------~~~a 292 (643)
. +-...|. |.-+|.+..-++-+.+++.--.+. -||+ |+..=+.+|.. . |+ ++.+
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 4 3344444 445677778888888888766654 3332 22222333321 1 11 1111
Q ss_pred HHHHHH-----------------HhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC---
Q 045672 293 TQVHVH-----------------VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY--- 352 (643)
Q Consensus 293 ~~i~~~-----------------~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~--- 352 (643)
..+.+. +.+.- +..--.|+-.|.+.+++.+|..+.+++....+.-|-.-...++..|+
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHI--PEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhC--hHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcC
Confidence 111111 11100 11223355567888999999888887754444333222223344443
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 045672 353 ----SQEALKLFESMKVSRIKPNYIT-IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427 (643)
Q Consensus 353 ----~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 427 (643)
..-|.+.|+-.-.++..-|... --++.+++.-...+++.+.+++.+.. |=...|...+ .+..+++..|.+.+|
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~ea 412 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEA 412 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHH
Confidence 3344444544434443333221 12334444455678888888888776 3344444444 467888888999999
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcC-CCC-cchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 428 VKLIHEMPY--EPDAVTWRALLGA-CKVHRNTDLAICAAKKILNLD-PQD-PGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 428 ~~~~~~m~~--~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+++|-+... -.|..+|.+++.- |...+.++.|-.++ +..+ |.+ ......+++-|.+++.+=-|.+.|+.+..
T Consensus 413 Eelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 413 EELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 999877731 1466677766654 57778888775554 4433 333 23455678888888888888888887765
Q ss_pred CC
Q 045672 503 RG 504 (643)
Q Consensus 503 ~g 504 (643)
..
T Consensus 490 lD 491 (557)
T KOG3785|consen 490 LD 491 (557)
T ss_pred cC
Confidence 43
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.85 E-value=2.7e-05 Score=79.69 Aligned_cols=389 Identities=14% Similarity=0.140 Sum_probs=197.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHH
Q 045672 75 VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYC 151 (643)
Q Consensus 75 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 151 (643)
..|..++++| ..+++..+....+.+++. .+....+.....-.+...|+.++|....+.-.. ++.+.|..+.-.+-
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 4456666655 457788888888888773 333334444333344567889999888776555 45678999988888
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHh
Q 045672 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231 (643)
Q Consensus 152 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 231 (643)
...++++|++.|...... .||....- .-|.-.-++.|+++.....-.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~--~~dN~qil-------------------------------rDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKI--EKDNLQIL-------------------------------RDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred hhhhHHHHHHHHHHHHhc--CCCcHHHH-------------------------------HHHHHHHHHHHhhhhHHHHHH
Confidence 899999999999998865 45432211 111111122222222222111
Q ss_pred hCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHH------HHhcCChhHhHHHHHHHHhh
Q 045672 232 EMP---TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG-FAADQSTLTSVLR------ACTGLALLELGTQVHVHVLK 301 (643)
Q Consensus 232 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------a~~~~~~~~~a~~i~~~~~~ 301 (643)
+.. ...-..|.....++.-.|+...|..++++..+.. -.|+...+..... .....|.++.+.+.......
T Consensus 134 ~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 134 QLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 111 1223455555555555666666666665555432 1233333322211 12334444444444433333
Q ss_pred -cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC--ChhhHHH-HHHHHHhcCCHHHHH-HH-----------------
Q 045672 302 -YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK--DVISWST-MISGLAQNGYSQEAL-KL----------------- 359 (643)
Q Consensus 302 -~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~-li~~~~~~g~~~~A~-~l----------------- 359 (643)
+-.....-..-.+.+.+.+++++|..++..+..+ |..-|+- +..++.+-.+.-+++ .+
T Consensus 214 ~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rl 293 (700)
T KOG1156|consen 214 QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRL 293 (700)
T ss_pred HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhc
Confidence 2222223333445555666666666666655433 2222222 222222222222222 23
Q ss_pred -----------------HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc--CC---------------C
Q 045672 360 -----------------FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY--GI---------------D 405 (643)
Q Consensus 360 -----------------~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~---------------~ 405 (643)
+..+.+.|+++-- ..+.+-+-.....+ +.+++...+ .+ +
T Consensus 294 plsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 294 PLSVLNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred cHHHhCcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCC
Confidence 3333444433322 22222221111111 222221110 00 2
Q ss_pred CChH--HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 045672 406 PGRE--HYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAV-TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481 (643)
Q Consensus 406 p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 481 (643)
|... ++-.++..+-+.|+++.|...++.. ...|+.+ .|..-..-+...|+.++|...++++.+++-.|...-.--+
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcA 446 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCA 446 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHH
Confidence 3332 3345566677777777777777766 4445544 3333334466667777777777777777755543433556
Q ss_pred HHHHccCChhHHHHHHHHHHhCCC
Q 045672 482 NIYANSQKWDEVAEVRKTMRARGI 505 (643)
Q Consensus 482 ~~~~~~g~~~~a~~~~~~m~~~g~ 505 (643)
+-..++.+.++|.++.....+.|.
T Consensus 447 KYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 447 KYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHccccHHHHHHHHHhhhccc
Confidence 666677777777777777665553
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.82 E-value=6e-05 Score=78.81 Aligned_cols=419 Identities=14% Similarity=0.096 Sum_probs=254.2
Q ss_pred HHhCCCcchHHHHH----HHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCC
Q 045672 49 FCYQRDLPRAMKAM----HAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124 (643)
Q Consensus 49 ~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 124 (643)
+.-..+.+++.-.. .++....+.-|...|..+.-+....|+++.+.+.|++....-+ .....|+.+-..|.-+|.
T Consensus 294 ~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 294 LIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGS 372 (799)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhcc
Confidence 33444555555433 3333344667889999999999999999999999999987543 456788899999999999
Q ss_pred hhHHHHHHccCCC----CCcch-HHHHHHHHH-hCCChhHHHHHHHHHHHC--C----CCCChhhHHHHHHH---H-hch
Q 045672 125 LEEAQVLFDQMPE----RNVVS-WTTMISAYC-DAKMNDKALELLIFMLRE--G----VRPNMFTYSAVLRA---C-DSL 188 (643)
Q Consensus 125 ~~~A~~~f~~m~~----~~~~~-~~~li~~~~-~~g~~~~A~~~~~~m~~~--g----~~p~~~t~~~ll~a---~-~~~ 188 (643)
-..|..+.++-.. |+..+ +-..-..|. +.+..++++++-.+.... + +.|-...+..+--. . +..
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 9999999987654 32233 332233333 347778888877777652 1 22222211111111 0 111
Q ss_pred hhHH--------HHHHHHHHh-CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC----CCCcchHHHHHHHHHhCCChh
Q 045672 189 IILR--------QLHCGIIKV-GFESDVFVRSALIDIYAKLGELRNAECVFNEMP----TRDLVVWNSIIGGFAQNSDVD 255 (643)
Q Consensus 189 ~~~~--------~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~ 255 (643)
...+ +..+..++. +-.|++.-| +.--|+..++++.|.....+.. ..+...|..+.-.+...+++.
T Consensus 453 ~seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 1111 233333333 334444433 4445777889999888776654 357889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh------------------------------cCCc
Q 045672 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK------------------------------YDHD 305 (643)
Q Consensus 256 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~------------------------------~~~~ 305 (643)
+|+.+.+.....- .-|..-...-+..-...++.+++......+.. ....
T Consensus 531 ~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a 609 (799)
T KOG4162|consen 531 EALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDA 609 (799)
T ss_pred HHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccccc
Confidence 9999988765531 11111111111111112222222222111111 0001
Q ss_pred hhHHhHHHHHHH---hcCCHHHHHHHHhhcCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 045672 306 LILNNALLDMYC---KCGSLEDAMSVFSRMIQKD------VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIV 376 (643)
Q Consensus 306 ~~~~~~Li~~y~---~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 376 (643)
..++..+..-.. +.-..+.....+.....++ ...|......+.+.+..++|...+.+....- ......|.
T Consensus 610 ~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~ 688 (799)
T KOG4162|consen 610 ISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYY 688 (799)
T ss_pred chhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHH
Confidence 112222211111 1111111111222222233 2246667778889999999987777765531 22344454
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHH
Q 045672 377 GVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVK--LIHEM-PYEP-DAVTWRALLGACK 451 (643)
Q Consensus 377 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~~~~ 451 (643)
.....+...|..++|.+.|..... +.| ++....++..++.+.|+..-|.. ++..+ ...| +...|-.+...+.
T Consensus 689 ~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 689 LRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK 765 (799)
T ss_pred HhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 444566778899999999887764 556 46688999999999998777766 77666 5556 5668999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcc
Q 045672 452 VHRNTDLAICAAKKILNLDPQDPG 475 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~p~~~~ 475 (643)
+.|+.+.|-..|.-+.++++.+|.
T Consensus 766 ~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 766 KLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999877663
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.80 E-value=2.1e-05 Score=74.19 Aligned_cols=210 Identities=19% Similarity=0.199 Sum_probs=133.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHH---HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhch
Q 045672 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMI---SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188 (643)
Q Consensus 112 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 188 (643)
.--|.+.+.-.|++.+|+.-|....+.|+..|-++. ..|...|+...|+.=+.+.++. +||-..-
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~A---------- 108 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAA---------- 108 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHH----------
Confidence 334555566678888888888888887777777765 4678888888888888887754 6662111
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 045672 189 IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268 (643)
Q Consensus 189 ~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 268 (643)
-+++| ..+.+.|.++.|..-|+.+.+.++. +|...+|.+-+....+
T Consensus 109 ---------RiQRg------------~vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e-- 154 (504)
T KOG0624|consen 109 ---------RIQRG------------VVLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQE-- 154 (504)
T ss_pred ---------HHHhc------------hhhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHH--
Confidence 11222 3467889999999988887654331 1111222211111111
Q ss_pred CCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhc---CCCChhhHHHHH
Q 045672 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRM---IQKDVISWSTMI 344 (643)
Q Consensus 269 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m---~~~~~~~~~~li 344 (643)
.......+..+...|+...+......+++ .+.+...+..-..+|...|++..|..-++.. ...++....-+-
T Consensus 155 ----~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis 230 (504)
T KOG0624|consen 155 ----HWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKIS 230 (504)
T ss_pred ----HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHH
Confidence 11122233334456677777777777777 6667777777788888888888887655544 344566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 045672 345 SGLAQNGYSQEALKLFESMKVSRIKPNYI 373 (643)
Q Consensus 345 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 373 (643)
..+-..|+.+.++...++-++ +.||..
T Consensus 231 ~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 231 QLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 777788888888888887766 567754
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.78 E-value=3.8e-06 Score=75.09 Aligned_cols=199 Identities=14% Similarity=0.029 Sum_probs=91.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhc
Q 045672 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKC 319 (643)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~ 319 (643)
...+..+|.+.|++..|..-+++.++.. +-+..++..+...|...|..+.|.+.++.+.+ .+.+..+.|.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F---- 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF---- 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH----
Confidence 4445556666666666666666666542 11233444444444444444444444444444 22233334444444
Q ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 045672 320 GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSM 398 (643)
Q Consensus 320 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~ 398 (643)
+|.+|++++|...|++....-.-|. ..||..+.-+..+.|+.+.|..+|+..
T Consensus 113 ---------------------------LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 113 ---------------------------LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred ---------------------------HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence 4444444444444444443211111 234444444444455555555555444
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM--PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 399 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
.+. .+........+.....+.|++..|..+++.. ...++..+....|..-...||.+.+-+.-.++....|..
T Consensus 166 L~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 166 LEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 431 1122333444444455555555555554444 112344444444444455555555555555555555543
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.77 E-value=1.1e-05 Score=84.51 Aligned_cols=285 Identities=14% Similarity=0.035 Sum_probs=190.8
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC--CCcc-hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----c
Q 045672 213 LIDIYAKLGELRNAECVFNEMPT--RDLV-VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT----G 285 (643)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~ 285 (643)
....+...|++++|++.++.-.. .|.. ........+.+.|+.++|..+|+.+.+. .|+...|-..+..|. .
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcc
Confidence 34556788999999999987654 2443 4556778889999999999999999997 466666655555544 1
Q ss_pred --CChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCH-HHHHHHHhhcCCCChh-hHHHHHHHHHhcCCHHHHHHHHH
Q 045672 286 --LALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSL-EDAMSVFSRMIQKDVI-SWSTMISGLAQNGYSQEALKLFE 361 (643)
Q Consensus 286 --~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~-~~A~~~~~~m~~~~~~-~~~~li~~~~~~g~~~~A~~l~~ 361 (643)
..+.+.-..+++.....-|.......+.-.+..-..+ ..+...+..+..+.+. +++.+-..|....+..-..+++.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 2246666777777766223322222222222221122 2233444455555654 45555556665555555555555
Q ss_pred HHHHC----C----------CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCH
Q 045672 362 SMKVS----R----------IKPNYI--TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGRAGKL 424 (643)
Q Consensus 362 ~m~~~----g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 424 (643)
..... + -.|... ++..+...|...|++++|+++.+..++. .|+ +..|..-...|-+.|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCH
Confidence 55432 1 123332 4455566778899999999999999873 565 77899999999999999
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC-------cchHHHHHHHHHccCChhHH
Q 045672 425 QEAVKLIHEM-PYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLD--PQD-------PGTYILLSNIYANSQKWDEV 493 (643)
Q Consensus 425 ~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a 493 (643)
++|.+.++.. ... .|...-+-....+.+.|++++|...+......+ |.. .......+.+|.+.|++..|
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999888 233 355566666677889999999999999887654 221 12234678999999999999
Q ss_pred HHHHHHHHh
Q 045672 494 AEVRKTMRA 502 (643)
Q Consensus 494 ~~~~~~m~~ 502 (643)
++.+..+.+
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 988877654
No 86
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.75 E-value=3e-05 Score=80.03 Aligned_cols=406 Identities=12% Similarity=0.091 Sum_probs=191.2
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 045672 44 DDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123 (643)
Q Consensus 44 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 123 (643)
..|..|....+|++|+.+-+. .|.+.-...-.+.++++...|.-+.|-++- . .+-.. -+-|+.|.+.|
T Consensus 562 ~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk----~----sdgd~-laaiqlyika~ 629 (1636)
T KOG3616|consen 562 EAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK----E----SDGDG-LAAIQLYIKAG 629 (1636)
T ss_pred HHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc----c----ccCcc-HHHHHHHHHcC
Confidence 456777788889999987543 343333334445566666667666554432 1 11111 34577888888
Q ss_pred ChhHHHHHHccCC--CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH-HHHHHHHH
Q 045672 124 LLEEAQVLFDQMP--ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR-QLHCGIIK 200 (643)
Q Consensus 124 ~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-~~~~~~~~ 200 (643)
....|.+.-..-. ..|......+..++.+..-+++|-++|+++.. |+. .+. |-+.|+.- +.. ++.+
T Consensus 630 ~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d----~dk-----ale-~fkkgdaf~kai-elar 698 (1636)
T KOG3616|consen 630 KPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FDK-----ALE-CFKKGDAFGKAI-ELAR 698 (1636)
T ss_pred CchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HHH-----HHH-HHHcccHHHHHH-HHHH
Confidence 8777766543221 13444444444444444444555555544431 110 010 11111110 000 0000
Q ss_pred hCCCCchhHH-HH--------------------------HHHHHHHcCCHHHHHHHHhhCCCCCcc--hHHHHHHHHHhC
Q 045672 201 VGFESDVFVR-SA--------------------------LIDIYAKLGELRNAECVFNEMPTRDLV--VWNSIIGGFAQN 251 (643)
Q Consensus 201 ~g~~~~~~~~-~~--------------------------li~~y~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~ 251 (643)
..++..++.. .. -+.+-.....|.+|..+++.+.++++. -|..+...|+..
T Consensus 699 fafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~ 778 (1636)
T KOG3616|consen 699 FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANK 778 (1636)
T ss_pred hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccc
Confidence 0111110000 01 122223334444444444444443322 233444444555
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhh
Q 045672 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSR 331 (643)
Q Consensus 252 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 331 (643)
|+++.|.++|-+.- .+.-.|..|.+.|.++.|.++-.....-+.....|-+-..-.-+.|++.+|+++|-.
T Consensus 779 ~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 779 GDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred hhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 55555554443211 122334444444444444333322222222223333333333444445555544444
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH
Q 045672 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN--YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409 (643)
Q Consensus 332 m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 409 (643)
+..|+. .|..|-++|..++.+++..+- .|+ ..|-..+..-+...|++..|...|-+...
T Consensus 850 i~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------- 910 (1636)
T KOG3616|consen 850 IGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------- 910 (1636)
T ss_pred ccCchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------
Confidence 444432 234445555555555444432 233 23445555666677787777776655432
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHH------HH-------------HHHcCCHHHHHHHHHHH
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYE----PDAVTWRALL------GA-------------CKVHRNTDLAICAAKKI 466 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~~~~~ll------~~-------------~~~~g~~~~a~~~~~~~ 466 (643)
|.+-+++|-..+.+++|.++-+.-+-. .-...|.--+ .. .+..+.++.|..+.+-.
T Consensus 911 -~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~ 989 (1636)
T KOG3616|consen 911 -FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIA 989 (1636)
T ss_pred -HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHh
Confidence 566778888888888888876543211 1112232211 11 23344445555444443
Q ss_pred HhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 467 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
.+ ..-+.....++..+...|++++|.+-+-+..+.
T Consensus 990 ~k--~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 990 AK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 32 223456778888889999999998777665544
No 87
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.75 E-value=9.5e-06 Score=83.54 Aligned_cols=102 Identities=18% Similarity=0.057 Sum_probs=61.4
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcC
Q 045672 43 LDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF 122 (643)
Q Consensus 43 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 122 (643)
.+++..+. .++.+|..+|-+-- .-...+..|....+++++..+-+. .|.+.-...-.+.+..+...
T Consensus 537 ra~lail~--kkfk~ae~ifleqn---------~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt 602 (1636)
T KOG3616|consen 537 RAMLAILE--KKFKEAEMIFLEQN---------ATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDT 602 (1636)
T ss_pred HHHHHHHH--hhhhHHHHHHHhcc---------cHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhc
Confidence 34444433 35677776664311 123345566667778888776543 34433334556667777778
Q ss_pred CChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHH
Q 045672 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL 163 (643)
Q Consensus 123 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 163 (643)
|+-+.|-++= +.+-.+ -+-|..|.+.|.+.+|....
T Consensus 603 ~qd~ka~elk----~sdgd~-laaiqlyika~~p~~a~~~a 638 (1636)
T KOG3616|consen 603 GQDEKAAELK----ESDGDG-LAAIQLYIKAGKPAKAARAA 638 (1636)
T ss_pred Cchhhhhhhc----cccCcc-HHHHHHHHHcCCchHHHHhh
Confidence 8888776543 333333 34588999999999887654
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.75 E-value=1.5e-07 Score=91.47 Aligned_cols=245 Identities=13% Similarity=0.080 Sum_probs=117.6
Q ss_pred HHHHcCCHHHHHHHHhhCCCC----CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHh
Q 045672 216 IYAKLGELRNAECVFNEMPTR----DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291 (643)
Q Consensus 216 ~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 291 (643)
-+.-.|++..+..-.+ .... +.....-+..++...|+++.++. ++... -.|....+..+...+....+-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHH
Confidence 3445677777775444 2111 22334456677777777665443 22222 25555555444444433233322
Q ss_pred HHHHHHHHh-h-cC-CchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045672 292 GTQVHVHVL-K-YD-HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368 (643)
Q Consensus 292 a~~i~~~~~-~-~~-~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 368 (643)
+..-+.... . .. .+..+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-- 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI-- 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 222221111 1 11 12222223334455556666665555443 23333444455555555555555555555442
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 045672 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM--PYEPDAVTWRAL 446 (643)
Q Consensus 369 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 446 (643)
..| .+...+..++ +..+.-.+.+.+|..+|+++ ...++..+.+.+
T Consensus 161 ~eD-~~l~qLa~aw--------------------------------v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~ 207 (290)
T PF04733_consen 161 DED-SILTQLAEAW--------------------------------VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGL 207 (290)
T ss_dssp SCC-HHHHHHHHHH--------------------------------HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHH
T ss_pred CCc-HHHHHHHHHH--------------------------------HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 122 2222222222 22222223455555555555 223455566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCCh-hHHHHHHHHHHh
Q 045672 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW-DEVAEVRKTMRA 502 (643)
Q Consensus 447 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 502 (643)
..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++.+++.
T Consensus 208 A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 208 AVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 66667777777777777777777777777777777777777776 556666666654
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.74 E-value=1.1e-06 Score=85.50 Aligned_cols=153 Identities=18% Similarity=0.149 Sum_probs=104.1
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHH
Q 045672 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293 (643)
Q Consensus 214 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 293 (643)
..+|...|++++|.+++++. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+.
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa------------- 170 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLA------------- 170 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHH-------------
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHH-------------
Confidence 34566788899998888776 45666677888889999999999999998764 333 3332222
Q ss_pred HHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045672 294 QVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370 (643)
Q Consensus 294 ~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 370 (643)
.+.+..+.-.+.+.+|..+|+++.+ +++.+.|.+..+....|++++|.+++.+....+ +-
T Consensus 171 ----------------~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~ 233 (290)
T PF04733_consen 171 ----------------EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PN 233 (290)
T ss_dssp ----------------HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CC
T ss_pred ----------------HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cC
Confidence 3344444444567888888888744 355667777788888888888888888876543 23
Q ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhHHh
Q 045672 371 NYITIVGVLFACSHAGFV-EDGWNHFKSMKKF 401 (643)
Q Consensus 371 ~~~t~~~ll~a~~~~g~~-~~a~~~~~~~~~~ 401 (643)
|..|+..++......|+. +.+.+++..+...
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 456777777777777776 6677788877763
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=3.6e-07 Score=91.92 Aligned_cols=217 Identities=15% Similarity=0.139 Sum_probs=169.8
Q ss_pred hcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHH
Q 045672 284 TGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALKL 359 (643)
Q Consensus 284 ~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l 359 (643)
.+.|++..|.-.|+.+++ .+.+...|.-|.......++-..|...+.+..+- |....-+|...|...|.-.+|+..
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 456778888888888887 7777888888888888888888888888877543 556677777788888988899999
Q ss_pred HHHHHHCCCCCCHHHHHHH--------HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 045672 360 FESMKVSRIKPNYITIVGV--------LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431 (643)
Q Consensus 360 ~~~m~~~g~~p~~~t~~~l--------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 431 (643)
++.-+... |-..-...- -........+....++|-.+....+..+|+.++.+|.-+|--.|.+++|.+.|
T Consensus 376 L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 88875532 111000000 01122223345566677777766666688899999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 432 HEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 432 ~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+.+ ..+| |...||-|...+....+.++|+..|++++++.|.-..+...|+-.|...|.++||.+.|-....
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 987 6677 5668999999999999999999999999999999999999999999999999999999877664
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=1e-05 Score=74.76 Aligned_cols=407 Identities=11% Similarity=0.034 Sum_probs=230.6
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHH-HHHHHH
Q 045672 42 LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI-LLNMHV 120 (643)
Q Consensus 42 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~~~ 120 (643)
+++.+..+.+..++.+|++++..-.+.. +.+....+.|..+|-...++..|...++++-..- |...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 5667777788888999999888776653 3367777888888888888888888888886643 43333221 122334
Q ss_pred cCCChhHHHHHHccCCCC-CcchHHHHHHH--HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHH
Q 045672 121 KFSLLEEAQVLFDQMPER-NVVSWTTMISA--YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCG 197 (643)
Q Consensus 121 ~~g~~~~A~~~f~~m~~~-~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~ 197 (643)
+.+.+.+|+++...|... +...-..-+.+ ..+.+++..+..+.++....|
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en--------------------------- 142 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN--------------------------- 142 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---------------------------
Confidence 567778888888777652 22221111211 223455666666666554221
Q ss_pred HHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 045672 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT----RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273 (643)
Q Consensus 198 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 273 (643)
+..+.+...-...+.|+++.|.+-|+...+ .....||.-+..| +.|+++.|+++..++.+.|++..+
T Consensus 143 --------~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 143 --------EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred --------ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCC
Confidence 222222233445688999999999988765 3456777655544 678999999999999988865322
Q ss_pred HHH----HHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhhHHHHH
Q 045672 274 STL----TSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK-----DVISWSTMI 344 (643)
Q Consensus 274 ~t~----~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li 344 (643)
..= .-.+++ ..+..-..++... -+..+|.-...+.+.|+.+.|.+.+-.|+.+ |++|...+.
T Consensus 214 ElgIGm~tegiDv----rsvgNt~~lh~Sa-----l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~A 284 (459)
T KOG4340|consen 214 ELGIGMTTEGIDV----RSVGNTLVLHQSA-----LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQA 284 (459)
T ss_pred ccCccceeccCch----hcccchHHHHHHH-----HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHH
Confidence 110 000000 0000000111100 0122344445577899999999999999754 677765543
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-CChHHHHHHHHHHH-hcC
Q 045672 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID-PGREHYSCMIDLLG-RAG 422 (643)
Q Consensus 345 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~-~~g 422 (643)
-.- ..+++.+..+-++-+..... --..||..++-.||++.-++.|-.++.+-... ... .+...|+ |++++. -.-
T Consensus 285 l~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT 360 (459)
T KOG4340|consen 285 LMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQT 360 (459)
T ss_pred Hhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCC
Confidence 222 23455555555555555432 33679999999999999999988877542210 000 1223333 333333 344
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCH----HHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHH
Q 045672 423 KLQEAVKLIHEMPYEPDAVTWRALLGA-CKVHRNT----DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497 (643)
Q Consensus 423 ~~~~A~~~~~~m~~~p~~~~~~~ll~~-~~~~g~~----~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 497 (643)
..++|.+-++.+...-....-..-+.. -.++.+- ..+++-+++.+++-- .....-++.|.+..++..+.++|
T Consensus 361 ~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~F 437 (459)
T KOG4340|consen 361 APEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIF 437 (459)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHH
Confidence 566666655444100000000011111 1112221 223334444444321 14566678889999999999999
Q ss_pred HHHHhC
Q 045672 498 KTMRAR 503 (643)
Q Consensus 498 ~~m~~~ 503 (643)
..-.+-
T Consensus 438 r~Svef 443 (459)
T KOG4340|consen 438 RKSVEF 443 (459)
T ss_pred HHHHhh
Confidence 876653
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.4e-05 Score=80.13 Aligned_cols=421 Identities=14% Similarity=0.103 Sum_probs=222.2
Q ss_pred HHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHcCCChh
Q 045672 48 RFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE-TFLVNILLNMHVKFSLLE 126 (643)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~ 126 (643)
+....|+++.|+.+|-+..... ++|...|+.-..+++..|++++|.+=-..-++.. |+ ..-|+.+..++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccHH
Confidence 4456789999999998887765 5588888888888999999988887766666643 43 456788888888889999
Q ss_pred HHHHHHccCCCC---CcchHHHHHHHHHhCCChhHH-HHHHHHH-HHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHh
Q 045672 127 EAQVLFDQMPER---NVVSWTTMISAYCDAKMNDKA-LELLIFM-LREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKV 201 (643)
Q Consensus 127 ~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A-~~~~~~m-~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~ 201 (643)
+|...|.+-.+. |...++-+..++ ..+.+ .+.|..- .-.++.-++.|-..+-+ ..+..+...+.+
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~-----~~~~~~l~~~~~- 157 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTNYSLSD-----PAYVKILEIIQK- 157 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhhhhhcc-----HHHHHHHHHhhc-
Confidence 999999877663 334455555555 11111 1111100 00001111111111000 000011111100
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChh----HHHHHHHHHHHc-CCCCCHHHH
Q 045672 202 GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD----EALNLYKRMKRA-GFAADQSTL 276 (643)
Q Consensus 202 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~m~~~-g~~p~~~t~ 276 (643)
.|. =+..|..-.++..|..++......-...-..++ ......+. .......++.+. ..+--..-.
T Consensus 158 --~p~------~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 158 --NPT------SLKLYLNDPRLMKADGQLKGVDELLFYASGIEI--LASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred --CcH------hhhcccccHHHHHHHHHHhcCcccccccccccc--CCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 000 011111111122222222111100000000000 00000000 000000000000 000011123
Q ss_pred HHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChh----------hHHHHHHH
Q 045672 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI----------SWSTMISG 346 (643)
Q Consensus 277 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~----------~~~~li~~ 346 (643)
..+.++.-...+++.+.+-+..+..+..++..++....+|...|...++...-+...+..-. +...+..+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 34455555566667777777776664455666677777777777777666555444332111 12223445
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhcCCHH
Q 045672 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE-HYSCMIDLLGRAGKLQ 425 (643)
Q Consensus 347 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~ 425 (643)
|.+.++++.|+..|.+....-..|+..+ +....+++........ -+.|... -.-.=...+.+.|++.
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHH
Confidence 6667788888888888665544444322 1222333333333222 1233321 1111145566788888
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 426 EAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 426 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
.|.+.+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+....|..=+-++....+|++|.+.|++-.+.
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888877 3334 55677777777888888888888888888888888888888888888888888888888776654
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.70 E-value=3.5e-05 Score=78.85 Aligned_cols=295 Identities=12% Similarity=-0.035 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcc---hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH---H
Q 045672 209 VRSALIDIYAKLGELRNAECVFNEMPT---RDLV---VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS---V 279 (643)
Q Consensus 209 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---l 279 (643)
.+..+...|...|+.+.+.+.+..... ++.. ........+...|++++|.+++++..+.. +.|...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 344455566667777776655554332 2222 22233445677899999999999988753 223333331 1
Q ss_pred HHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHH
Q 045672 280 LRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQE 355 (643)
Q Consensus 280 l~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 355 (643)
.......+....+.+....... .+........+...+...|++++|...+++..+ .+...+..+...|...|++++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 1111223444555554444222 333344555677788999999999999998743 345677888889999999999
Q ss_pred HHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH-H--HHHHHHHhcCCHHHHHH
Q 045672 356 ALKLFESMKVSRI-KPNY--ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY-S--CMIDLLGRAGKLQEAVK 429 (643)
Q Consensus 356 A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~ 429 (643)
|+..+++...... .|+. ..+..+...+...|+.++|..+++.........+..... + .++..+...|..+.+.+
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 246 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR 246 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH
Confidence 9999998876432 2332 234467778889999999999999875421111222111 1 23333444443222222
Q ss_pred H---HHhC-CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C--------CCcchHHHHHHHHHccCChhHH
Q 045672 430 L---IHEM-PYEPD---AVTWRALLGACKVHRNTDLAICAAKKILNLD-P--------QDPGTYILLSNIYANSQKWDEV 493 (643)
Q Consensus 430 ~---~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a 493 (643)
. .... +..|. .........++...|+.+.|...++.+.... . .........+.++...|++++|
T Consensus 247 w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A 326 (355)
T cd05804 247 WEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATA 326 (355)
T ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHH
Confidence 2 1111 11011 1222245556778899999999998886532 1 1344556778888999999999
Q ss_pred HHHHHHHHhCC
Q 045672 494 AEVRKTMRARG 504 (643)
Q Consensus 494 ~~~~~~m~~~g 504 (643)
.+.+......+
T Consensus 327 ~~~L~~al~~a 337 (355)
T cd05804 327 LELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 94
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=0.00013 Score=78.10 Aligned_cols=238 Identities=15% Similarity=0.161 Sum_probs=155.0
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCChhHhHHHHHHHHhh--------------
Q 045672 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD-QSTLTSVLRACTGLALLELGTQVHVHVLK-------------- 301 (643)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-------------- 301 (643)
|+..-+..+.++...+-+.+-+++++++.-..-.-+ ......++-.-+-..+.....++..++..
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~ 1062 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQ 1062 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhh
Confidence 455556667788888888888888888764321111 11111111111111122222222222222
Q ss_pred -----------cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045672 302 -----------YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370 (643)
Q Consensus 302 -----------~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 370 (643)
+..+....+.|++ .-++++.|.+.-++..+ ...|..+..+-.+.|...+|++-|-+. -
T Consensus 1063 LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------d 1131 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------D 1131 (1666)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------C
Confidence 2222222222222 23344444444433333 457999999999999999999887653 3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045672 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450 (643)
Q Consensus 371 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 450 (643)
|+..|..++..+++.|.+++-.+++....++ .-+|.+. +.|+-+|++.+++.+-++++. -|+..-...+.+-|
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRC 1204 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHH
Confidence 6778999999999999999999999877764 5556544 578999999999999888764 37888788888889
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHH
Q 045672 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTM 500 (643)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 500 (643)
...|.++.|.-+|.-+ +.|..|+..+...|.+..|..--++.
T Consensus 1205 f~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999998888753 56777888888888877776554433
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.67 E-value=2.5e-06 Score=93.86 Aligned_cols=201 Identities=12% Similarity=0.115 Sum_probs=170.9
Q ss_pred cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 045672 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK--------DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373 (643)
Q Consensus 302 ~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 373 (643)
.+.....|-..|......++.++|++++++.... -...|.++++.-...|.-+...++|+++.+. --...
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence 6666778888899999999999999999887432 2347889998888889888999999999873 22245
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP---DAVTWRALLGA 449 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~ 449 (643)
.|..|+..|.+.+.+++|.++++.|.++++ .....|..+++.+.++.+-+.|.+++.++ ..-| ......-.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 678899999999999999999999999766 66778999999999999999999999876 2223 34455666677
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 045672 450 CKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506 (643)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 506 (643)
-.++|+.+++..+|+..+...|.....|..++++-.+.|..+.++.+|++....++.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 789999999999999999999999999999999999999999999999999988775
No 96
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=0.00027 Score=75.83 Aligned_cols=427 Identities=15% Similarity=0.146 Sum_probs=227.3
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHH----------HHHHHHHHHcCC-
Q 045672 37 RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEA----------KLVHNHVLSGGF- 105 (643)
Q Consensus 37 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a----------~~~~~~~~~~g~- 105 (643)
+..+.-+-+..-.-+.++..--+..++...+.|. .|..+++++.+.|..+++-.+- +.+=....++++
T Consensus 836 ~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~ 914 (1666)
T KOG0985|consen 836 RGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPH 914 (1666)
T ss_pred hccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCc
Confidence 3444455666666777788888888888888884 4889999999888765543221 111111111111
Q ss_pred ------------------CCchhHHHHHHHHHHcCCChhHHHHHHc-----------cC-----CC-CCcchHHHHHHHH
Q 045672 106 ------------------EPETFLVNILLNMHVKFSLLEEAQVLFD-----------QM-----PE-RNVVSWTTMISAY 150 (643)
Q Consensus 106 ------------------~~~~~~~~~li~~~~~~g~~~~A~~~f~-----------~m-----~~-~~~~~~~~li~~~ 150 (643)
......+..+.+.+.+..+.+-=.+++. +. ++ .|+..-+.-..++
T Consensus 915 lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAf 994 (1666)
T KOG0985|consen 915 LACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAF 994 (1666)
T ss_pred eEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHH
Confidence 0011122233333333333332222321 11 11 3555566677888
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhH-----HHHHHHHhchhhHHHHHHHHHHhC-C-CCchhHHHHHHHHHHHcCCH
Q 045672 151 CDAKMNDKALELLIFMLREGVRPNMFTY-----SAVLRACDSLIILRQLHCGIIKVG-F-ESDVFVRSALIDIYAKLGEL 223 (643)
Q Consensus 151 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~-----~~ll~a~~~~~~~~~~~~~~~~~g-~-~~~~~~~~~li~~y~~~g~~ 223 (643)
...+-+.+-++++++..-. |+.++= +.++-...+ .+..++.+.+.+.. + .|+ +.......+-+
T Consensus 995 MtadLp~eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~------ia~iai~~~Ly 1064 (1666)
T KOG0985|consen 995 MTADLPNELIELLEKIVLD---NSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPD------IAEIAIENQLY 1064 (1666)
T ss_pred HhcCCcHHHHHHHHHHhcC---CcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchh------HHHHHhhhhHH
Confidence 8888888888988887643 222211 111111111 11112222222221 0 011 11222223334
Q ss_pred HHHHHHHhhCCC-------------------------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 045672 224 RNAECVFNEMPT-------------------------RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278 (643)
Q Consensus 224 ~~A~~~f~~~~~-------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 278 (643)
++|..+|+...- ..+..|+.+..+-.+.|...+|++-|-+. -|+..|..
T Consensus 1065 EEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~e 1138 (1666)
T KOG0985|consen 1065 EEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLE 1138 (1666)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHH
Confidence 444444433210 13567999999999999999999877432 36788999
Q ss_pred HHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhh-------------------
Q 045672 279 VLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS------------------- 339 (643)
Q Consensus 279 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~------------------- 339 (643)
++.++.+.|.++.-..++..+.+......+-+.|+-+|++.+++.+-++... .||+..
T Consensus 1139 Vi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl 1215 (1666)
T KOG0985|consen 1139 VIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKL 1215 (1666)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHH
Confidence 9999999999999999998888844455566789999999999988776653 233333
Q ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 045672 340 -------WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412 (643)
Q Consensus 340 -------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 412 (643)
|..+...+...|++..|.+.-++. .+..||-.+-.+|...+.+..| .|.- .++-....-..
T Consensus 1216 ~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCG-L~iivhadeLe 1283 (1666)
T KOG0985|consen 1216 LYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICG-LNIIVHADELE 1283 (1666)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcC-ceEEEehHhHH
Confidence 444444444555555544443322 2344555555555554444333 2211 12222334455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCCh
Q 045672 413 CMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490 (643)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 490 (643)
-|+..|-..|.++|-..+++.. +.+. ....|.-|.-.|.+.+ +++-.+.++-... ....--+++++.++..|
T Consensus 1284 eli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFws-----RvNipKviRA~eqahlW 1357 (1666)
T KOG0985|consen 1284 ELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWS-----RVNIPKVIRAAEQAHLW 1357 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHH-----hcchHHHHHHHHHHHHH
Confidence 5666666777777766666654 3322 2233444444444332 2222222211111 01122355666666667
Q ss_pred hHHHHHHHHHH
Q 045672 491 DEVAEVRKTMR 501 (643)
Q Consensus 491 ~~a~~~~~~m~ 501 (643)
.|..-++.+-.
T Consensus 1358 ~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1358 SELVFLYDKYE 1368 (1666)
T ss_pred HHHHHHHHhhh
Confidence 66666665543
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.60 E-value=0.00011 Score=85.21 Aligned_cols=294 Identities=11% Similarity=-0.004 Sum_probs=190.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC----CC---c-----chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH----H
Q 045672 211 SALIDIYAKLGELRNAECVFNEMPT----RD---L-----VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ----S 274 (643)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~----~~---~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ 274 (643)
......+...|++++|...+..... .+ . .....+...+...|++++|...+++....-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3444556678899988887765421 11 1 11122334456789999999999887663111222 2
Q ss_pred HHHHHHHHHhcCChhHhHHHHHHHHhh----c-CC--chhHHhHHHHHHHhcCCHHHHHHHHhhcCC-------C----C
Q 045672 275 TLTSVLRACTGLALLELGTQVHVHVLK----Y-DH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQ-------K----D 336 (643)
Q Consensus 275 t~~~ll~a~~~~~~~~~a~~i~~~~~~----~-~~--~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-------~----~ 336 (643)
....+...+...|+++.|...+..+.. . .+ .......+...+...|++++|...+++... + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 334445556778999999999888876 1 11 123445667788899999999998876522 1 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH-
Q 045672 337 VISWSTMISGLAQNGYSQEALKLFESMKVS--RIKPN--YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY- 411 (643)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~- 411 (643)
...+..+...+...|++++|...+++.... ...+. ...+..+.......|+.++|.+.+...............+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 223445556677789999999999887542 11222 2334445556778899999999988875421111111111
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCcc
Q 045672 412 ----SCMIDLLGRAGKLQEAVKLIHEMPYE--PDA----VTWRALLGACKVHRNTDLAICAAKKILNLD------PQDPG 475 (643)
Q Consensus 412 ----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~ 475 (643)
......+...|+.+.|.+.+...... ... ..+..+..++...|+.++|...++++++.. +....
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 11224456689999999998776211 111 113455566888999999999999988742 12234
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 476 TYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 476 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
++..++.+|...|+.++|...+.+..+..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 67788999999999999999999988654
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=7.5e-05 Score=78.26 Aligned_cols=408 Identities=15% Similarity=0.151 Sum_probs=200.4
Q ss_pred CCCCCcchHHHHHH--HHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-------
Q 045672 34 TITRNSSSLLDDFT--RFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGG------- 104 (643)
Q Consensus 34 ~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g------- 104 (643)
...-|.+|-.+|+. .|...|+.+.|.+-.+.++ +...|..+.+.|.+.++++-|+-.+..|....
T Consensus 721 le~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~ 794 (1416)
T KOG3617|consen 721 LENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRR 794 (1416)
T ss_pred ccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHH
Confidence 33445566666664 5677888888888777665 34568888888888887777776666554321
Q ss_pred -C-CCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 045672 105 -F-EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182 (643)
Q Consensus 105 -~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 182 (643)
. .++ ..-....-.-...|-+++|+.+|++... |..|=..|-..|++++|+++-+.=-+-.++-+-+-|..-|
T Consensus 795 a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 795 AQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL 868 (1416)
T ss_pred HHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH
Confidence 1 121 2223333344567888888888887664 4445566777888888888766432222222222222222
Q ss_pred HHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 045672 183 RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262 (643)
Q Consensus 183 ~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 262 (643)
.+ .++.+...+...+.|... -.+...| ..+...-+.+.+++.+ ...|.-...-+-..|+.+.|+.+|.
T Consensus 869 ea---r~Di~~AleyyEK~~~ha-fev~rmL------~e~p~~~e~Yv~~~~d--~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 869 EA---RRDIEAALEYYEKAGVHA-FEVFRML------KEYPKQIEQYVRRKRD--ESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred Hh---hccHHHHHHHHHhcCChH-HHHHHHH------HhChHHHHHHHHhccc--hHHHHHHHHHHhcccchHHHHHHHH
Confidence 21 222222222222222110 0000000 0111222222233332 2333334444445677777777776
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHH
Q 045672 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342 (643)
Q Consensus 263 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~ 342 (643)
...+ |-++++..+-.|..++|.++-++. .|......|..+|-..|++.+|...|-+.. ++..
T Consensus 937 ~A~D---------~fs~VrI~C~qGk~~kAa~iA~es----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----afsn 998 (1416)
T KOG3617|consen 937 SAKD---------YFSMVRIKCIQGKTDKAARIAEES----GDKAACYHLARMYENDGDVVKAVKFFTRAQ-----AFSN 998 (1416)
T ss_pred Hhhh---------hhhheeeEeeccCchHHHHHHHhc----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHH
Confidence 5543 334445555566666666554432 344455667777777777777777776542 1222
Q ss_pred HHHHHHhcC---------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH---------HHHh
Q 045672 343 MISGLAQNG---------------YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH---------FKSM 398 (643)
Q Consensus 343 li~~~~~~g---------------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~---------~~~~ 398 (643)
.|..+-.++ +.-.|-..|++. |.. +-..+..|-++|.+.+|+++ ++-+
T Consensus 999 AIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen 999 AIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred HHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence 222222211 111222223221 111 11122234555555555443 2333
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCC---
Q 045672 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN---LDPQ--- 472 (643)
Q Consensus 399 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~p~--- 472 (643)
.++..-..|+...+.-.+.+....++++|..++.... -|.-.+..| ...+..-.+++.+.|.- -.|+
T Consensus 1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar------~~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~ 1143 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR------EFSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQE 1143 (1416)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHH
Confidence 3332333355555555666666666666666554331 112222222 33334444444444421 1122
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHH
Q 045672 473 DPGTYILLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 473 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 498 (643)
....+..++..|.++|.+..|.+=|.
T Consensus 1144 R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1144 RKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHh
Confidence 12356677777888887776665543
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.58 E-value=6.3e-06 Score=78.77 Aligned_cols=178 Identities=11% Similarity=0.023 Sum_probs=107.3
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---Ch---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHH
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQK---DV---ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY----ITI 375 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~ 375 (643)
...+..+...|.+.|++++|...|+++... +. ..|..+..++.+.|++++|+..++++.+. .|+. .++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHH
Confidence 345555666666677777777777665331 11 24555666666677777777777776653 2321 133
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 045672 376 VGVLFACSHA--------GFVEDGWNHFKSMKKFYGIDPGR-EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446 (643)
Q Consensus 376 ~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 446 (643)
..+..++.+. |+.++|.+.|+.+.+. .|+. ..+..+... +...... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence 3333344333 5566666666666653 2322 122111111 0000000 0011234
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 447 LGACKVHRNTDLAICAAKKILNLDPQD---PGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 447 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
...+...|+++.|+..++++++..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556888999999999999999987764 468899999999999999999999988754
No 100
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=1.1e-07 Score=58.91 Aligned_cols=34 Identities=41% Similarity=0.563 Sum_probs=29.3
Q ss_pred hCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 045672 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234 (643)
Q Consensus 201 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 234 (643)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888889999999999999999998884
No 101
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.49 E-value=8.2e-05 Score=79.77 Aligned_cols=447 Identities=12% Similarity=0.036 Sum_probs=243.9
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHH--HHccCCHHHHHHHHHHHHHcCCCCchhHHHH
Q 045672 37 RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKC--CLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114 (643)
Q Consensus 37 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 114 (643)
.|..+|..+..+|.+.|++..|+++|.+.... .|+. +|...-.+ -+..|.++++...++..+..- .......+.
T Consensus 594 kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~g 669 (1238)
T KOG1127|consen 594 KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNG 669 (1238)
T ss_pred hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhh
Confidence 47778999999999999999999999887654 3432 22222222 245688888888888776532 111112223
Q ss_pred HHHHHH-------cCCChhHHHHHHccCCC-----------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh
Q 045672 115 LLNMHV-------KFSLLEEAQVLFDQMPE-----------RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176 (643)
Q Consensus 115 li~~~~-------~~g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 176 (643)
|...+. -.|-...|...|++-.+ .+...|-.+- .|..+|-+... . .|+..
T Consensus 670 LaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----------dac~~f~q~e~-~-~vn~h 737 (1238)
T KOG1127|consen 670 LAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----------DACYIFSQEEP-S-IVNMH 737 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----------HHHHHHHHhcc-c-chHHH
Confidence 333332 23333344444433221 1122222221 23333333321 1 23333
Q ss_pred hHHHHHHHHhchhhH---H----HHHHHHHHhCCCCchhHHHHHHHHHHH----cC----CHHHHHHHHhhCC---CCCc
Q 045672 177 TYSAVLRACDSLIIL---R----QLHCGIIKVGFESDVFVRSALIDIYAK----LG----ELRNAECVFNEMP---TRDL 238 (643)
Q Consensus 177 t~~~ll~a~~~~~~~---~----~~~~~~~~~g~~~~~~~~~~li~~y~~----~g----~~~~A~~~f~~~~---~~~~ 238 (643)
....+..-.-..+.. + ..-.......+..+...|..|...|.+ +| +...|...+.... ..+.
T Consensus 738 ~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~ 817 (1238)
T KOG1127|consen 738 YLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNE 817 (1238)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccH
Confidence 333222212111111 1 011111111223334555555554443 22 2334556665443 3567
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHH
Q 045672 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYC 317 (643)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~ 317 (643)
..||.|.-. ...|++.-|...|-+-... .+-...+|..+.-.|....+++.|.+.+..+.. .+.+..-|-.....-.
T Consensus 818 ~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~e 895 (1238)
T KOG1127|consen 818 GLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPE 895 (1238)
T ss_pred HHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHH
Confidence 788877655 5567777777777655543 234566777777777888899999999988888 4445555544444445
Q ss_pred hcCCHHHHHHHHhhc--------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---------CCCCCCHHHHHHHHH
Q 045672 318 KCGSLEDAMSVFSRM--------IQKDVISWSTMISGLAQNGYSQEALKLFESMKV---------SRIKPNYITIVGVLF 380 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m--------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---------~g~~p~~~t~~~ll~ 380 (643)
..|+.-++..+|..- ..++..-|-+......++|+.++-+..-+++-. .|.+-+...|.....
T Consensus 896 avG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gs 975 (1238)
T KOG1127|consen 896 AVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGS 975 (1238)
T ss_pred HHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHh
Confidence 567777777777652 113444555555555667776655544443321 123334667777776
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH----HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 045672 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC----MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456 (643)
Q Consensus 381 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~ 456 (643)
..-+.+.+..|.+...+...-....-+...|+. +...+...|.++.|..-+...+...|...-.+-+.. .-.+++
T Consensus 976 tlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf 1054 (1238)
T KOG1127|consen 976 TLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDF 1054 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHH
Confidence 677777777766665554432222334444553 334455567788777766665544455554444444 346789
Q ss_pred HHHHHHHHHHHhcCCCCc---chHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 457 DLAICAAKKILNLDPQDP---GTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 457 ~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+.+...|++++.+--++. .....++.....++.-+.|....-+...
T Consensus 1055 ~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1055 FSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 999999999988754433 2344455555667777777776655543
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.49 E-value=0.00078 Score=78.31 Aligned_cols=259 Identities=10% Similarity=0.012 Sum_probs=169.5
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC----CCc----chHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CC--CHHHHHHH
Q 045672 213 LIDIYAKLGELRNAECVFNEMPT----RDL----VVWNSIIGGFAQNSDVDEALNLYKRMKRAGF---AA--DQSTLTSV 279 (643)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~l 279 (643)
+...+...|++++|...+++... .+. ..++.+...+...|++++|...+.+.....- .+ ...++..+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 33456678999999988877432 221 2445666677889999999999988765311 11 12344455
Q ss_pred HHHHhcCChhHhHHHHHHHHhh----c-CC----chhHHhHHHHHHHhcCCHHHHHHHHhhcCC------C--ChhhHHH
Q 045672 280 LRACTGLALLELGTQVHVHVLK----Y-DH----DLILNNALLDMYCKCGSLEDAMSVFSRMIQ------K--DVISWST 342 (643)
Q Consensus 280 l~a~~~~~~~~~a~~i~~~~~~----~-~~----~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~------~--~~~~~~~ 342 (643)
...+...|+++.|...+..... . .+ ....+..+...+...|++++|...+++... + ....+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 6667889999999999988876 1 11 123344566677888999999988877622 1 1234455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-----HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---hHHHHH
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRI-KPNYITI-----VGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG---REHYSC 413 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~ 413 (643)
+...+...|+.++|.+.+++.....- ......+ ...+..+...|+.+.|...+...... ..... ...+..
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~ 696 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHH
Confidence 66678889999999999988754210 1111111 01123345578999998887765431 11111 111345
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 414 MIDLLGRAGKLQEAVKLIHEM-------PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
+..++...|+.++|...+++. +..++ ..+...+..++...|+.++|...+++++++...
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 677788999999999988776 22222 234555667789999999999999999987644
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.48 E-value=0.00025 Score=72.54 Aligned_cols=266 Identities=11% Similarity=0.023 Sum_probs=169.0
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHH-HHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhH---
Q 045672 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF-AADQSTLTS-VLRACTGLALLELGTQVHVHVLK-YDHDLILNNA--- 311 (643)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~-ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~--- 311 (643)
...|..+...+...|+.+.+...+.+..+... .++...... ....+...|+++.+..++..+.+ .+.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~ 85 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHH
Confidence 34566677777778888888777766654321 223322222 22344678999999999999998 5555545442
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 045672 312 LLDMYCKCGSLEDAMSVFSRMIQKD---VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388 (643)
Q Consensus 312 Li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 388 (643)
+.......|..+.+.+.+......+ ...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 2222233566667777666532222 2334455667889999999999999998853 33356677788889999999
Q ss_pred HHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--CHHH-H-H--HHHHHHHHcCCHHHH
Q 045672 389 EDGWNHFKSMKKFYGIDPGR--EHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP--DAVT-W-R--ALLGACKVHRNTDLA 459 (643)
Q Consensus 389 ~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p--~~~~-~-~--~ll~~~~~~g~~~~a 459 (643)
++|..+++...+.....|+. ..|..+...+...|++++|.+.+++. ...| .... . + .++.-+...|..+.+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 99999999887632222332 34567888999999999999999986 2223 2111 1 1 223334445544333
Q ss_pred HHH---HHHHHhcCCC--CcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 460 ICA---AKKILNLDPQ--DPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 460 ~~~---~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
.+. ........|. ....-...+.++...|+.++|.+.++.+....
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 333 2221111122 12233367778889999999999999987643
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.47 E-value=1.7e-05 Score=72.80 Aligned_cols=118 Identities=12% Similarity=0.079 Sum_probs=95.5
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCC--HHHH
Q 045672 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGA-CKVHRN--TDLA 459 (643)
Q Consensus 385 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~--~~~a 459 (643)
.++.+++...++...+ .-+.+...|..+...|...|++++|...|++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5666777777777665 34557788888888999999999999998887 4455 55567777766 467676 5999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
..+++++++.+|+++.++..++..+.+.|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999998754
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=1.9e-07 Score=57.80 Aligned_cols=33 Identities=36% Similarity=0.507 Sum_probs=22.1
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHHHHccCC
Q 045672 104 GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136 (643)
Q Consensus 104 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 136 (643)
|+.||..+||.||.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 556666666666666666666666666666663
No 106
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.0011 Score=67.65 Aligned_cols=338 Identities=15% Similarity=0.132 Sum_probs=190.9
Q ss_pred HHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhH
Q 045672 115 LLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL 191 (643)
Q Consensus 115 li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 191 (643)
=++.+.+.|++++|.+.-+++.. .|...+..-+-+..+.+++++|+.+.+.-.. ..+++..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~---------- 81 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSF---------- 81 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchh----------
Confidence 35666677777777777766654 2445556666667777777777744433210 0011100
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHH--HHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 045672 192 RQLHCGIIKVGFESDVFVRSALIDIY--AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269 (643)
Q Consensus 192 ~~~~~~~~~~g~~~~~~~~~~li~~y--~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 269 (643)
. +=.+| .+.+..|+|...++.....+..+...-...+-+.|++++|+++|+.+.+.+.
T Consensus 82 -----------------~---fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 82 -----------------F---FEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred -----------------h---HHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 0 12233 4789999999999966655655666667778889999999999999988764
Q ss_pred CC-CHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCC-chhHHhHHHHHHHhcCCHHHHHHHHhhc--------CCCC---
Q 045672 270 AA-DQSTLTSVLRACTGLALLELGTQVHVHVLKYDH-DLILNNALLDMYCKCGSLEDAMSVFSRM--------IQKD--- 336 (643)
Q Consensus 270 ~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~Li~~y~~~g~~~~A~~~~~~m--------~~~~--- 336 (643)
.- |...-..++.+-.. -.+. ........+. +-..+-...-.+...|++.+|+++++.. .+.|
T Consensus 142 dd~d~~~r~nl~a~~a~----l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~e 216 (652)
T KOG2376|consen 142 DDQDEERRANLLAVAAA----LQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNE 216 (652)
T ss_pred chHHHHHHHHHHHHHHh----hhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccch
Confidence 33 22222222221111 1111 1111111221 2223333445677899999999999876 1111
Q ss_pred --hh-----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCCHHH--HHHHHHHhHHhc-
Q 045672 337 --VI-----SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT----IVGVLFACSHAGFVED--GWNHFKSMKKFY- 402 (643)
Q Consensus 337 --~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~--a~~~~~~~~~~~- 402 (643)
.. .--.|.-.+...|+.++|..++...++.. .+|... -|.|+ +...-.++-. ++..++.....+
T Consensus 217 Eeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~ 294 (652)
T KOG2376|consen 217 EEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLA 294 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhH
Confidence 11 12234445677899999999999998875 455422 22222 3332222222 122222211100
Q ss_pred ---------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHH-HH-cCCHHHHHHHHHHHHhcC
Q 045672 403 ---------GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE-PDAVTWRALLGAC-KV-HRNTDLAICAAKKILNLD 470 (643)
Q Consensus 403 ---------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~-~~-~g~~~~a~~~~~~~~~~~ 470 (643)
.-.-...--++++.+| .+..+.+.++-...+.. |.. .+.+++..+ .. ......+..++....+..
T Consensus 295 ~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~ 371 (652)
T KOG2376|consen 295 EFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGH 371 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccC
Confidence 0000111123444444 45556777777777533 443 344444442 22 225778888888888888
Q ss_pred CCC-cchHHHHHHHHHccCChhHHHHHHH
Q 045672 471 PQD-PGTYILLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 471 p~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 498 (643)
|.+ ......++......|+|+.|.+++.
T Consensus 372 p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 372 PEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 886 4456667777899999999999998
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.45 E-value=7.4e-06 Score=71.09 Aligned_cols=121 Identities=9% Similarity=-0.001 Sum_probs=75.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 045672 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE 437 (643)
Q Consensus 359 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 437 (643)
+|++..+ +.|+. +.....++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ...
T Consensus 15 ~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 15 ILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4444444 23443 33445566667777777777777665 22335566666777777777777777777666 333
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 438 P-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 438 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
| +...|..+..++...|+.++|+..++++++..|+++..+...+.+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3 45566666666777777777777777777777777766666555543
No 108
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.45 E-value=0.00028 Score=75.88 Aligned_cols=174 Identities=13% Similarity=0.076 Sum_probs=119.9
Q ss_pred HHHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 045672 323 EDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399 (643)
Q Consensus 323 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 399 (643)
..|...+...+ ..+...||++.-. ...|.+.-|..-|-+-... .+-+..+|..+.-.|.+..+++.|...|....
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 35666666553 3567788887665 5556776666666555443 24456788888878889999999999998776
Q ss_pred HhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-------
Q 045672 400 KFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-------PYEPDAVTWRALLGACKVHRNTDLAICAAK------- 464 (643)
Q Consensus 400 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~------- 464 (643)
. +.| +...|-...-.....|+.-++..+|..- +.-|+...|.....-...+|+.++-+...+
T Consensus 878 S---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 878 S---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred h---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 4 344 5566666666666778888888887652 233666666666555667777666554444
Q ss_pred ---HHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 465 ---KILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 465 ---~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
+.+...|+...+|...+....+.+.+++|.+...+..
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4455678888899999988888888888887776643
No 109
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=0.00063 Score=71.63 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=82.1
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHhC-C--------CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 045672 38 NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCH-G--------VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108 (643)
Q Consensus 38 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 108 (643)
+-+.|..|.+.+.+..+.+-|.-.+-.|... | -.|+ .+=..+.-.....|.+++|+.++.+-.+.+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---- 830 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---- 830 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence 4456999999999999988887777666431 1 1222 222223333457899999999999887643
Q ss_pred hhHHHHHHHHHHcCCChhHHHHHHccCCCC-CcchHHHHHHHHHhCCChhHHHHHHHHH
Q 045672 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPER-NVVSWTTMISAYCDAKMNDKALELLIFM 166 (643)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 166 (643)
.|=..|-..|.|++|.++-+.-..- =..||..-...+-..++.+.|++.|++.
T Consensus 831 -----LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 831 -----LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred -----HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 3456677889999999987654331 1236666666777788899999998864
No 110
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=0.00046 Score=69.54 Aligned_cols=409 Identities=14% Similarity=0.084 Sum_probs=221.4
Q ss_pred cCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhH
Q 045672 33 NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD-SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111 (643)
Q Consensus 33 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 111 (643)
....+|-+.|..-..+|+..|++++|++=-.+-.+. .|+ ...|+....++...|++++|..-|..-++.. +.+...
T Consensus 30 ~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L 106 (539)
T KOG0548|consen 30 MLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQL 106 (539)
T ss_pred ccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHH
Confidence 334458888999999999999999999876666654 454 6779999999999999999999999998874 356677
Q ss_pred HHHHHHHHHcCCChhHHHHHHccCC-----CCC--------cchHHHHHHHHHhCC-------ChhHHHHHHHHHHH---
Q 045672 112 VNILLNMHVKFSLLEEAQVLFDQMP-----ERN--------VVSWTTMISAYCDAK-------MNDKALELLIFMLR--- 168 (643)
Q Consensus 112 ~~~li~~~~~~g~~~~A~~~f~~m~-----~~~--------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~--- 168 (643)
++.|..++... ..+.+.|..-. ..+ ...|..++..+-+.- +.+......-.+..
T Consensus 107 ~~gl~~a~~~~---~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~ 183 (539)
T KOG0548|consen 107 KTGLAQAYLED---YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDE 183 (539)
T ss_pred HHhHHHhhhHH---HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcc
Confidence 88888887111 11122221100 001 112222332222110 00000000000000
Q ss_pred -----CCCCCChhhHHHHHHHHhchhhHH-HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCcch
Q 045672 169 -----EGVRPNMFTYSAVLRACDSLIILR-QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT--RDLVV 240 (643)
Q Consensus 169 -----~g~~p~~~t~~~ll~a~~~~~~~~-~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~ 240 (643)
.|..+....-.. +.+..... .+-+.........-..-...|.++..+..+++.|.+-++...+ .++.-
T Consensus 184 ~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~ 259 (539)
T KOG0548|consen 184 LLFYASGIEILASMAEP----CKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDITY 259 (539)
T ss_pred ccccccccccCCCCCCc----ccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHH
Confidence 000000000000 00000000 0000000000000001122344555555566666655554433 23333
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcC
Q 045672 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCG 320 (643)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g 320 (643)
++....+|...|.+.++...-....+.|.. ...-|+.+-.++ ..+..+|.+.+
T Consensus 260 ~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~--------------------------~r~g~a~~k~~ 312 (539)
T KOG0548|consen 260 LNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKAL--------------------------ARLGNAYTKRE 312 (539)
T ss_pred HHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHH--------------------------HHhhhhhhhHH
Confidence 445555666666666665555554443311 111121111111 12445677778
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhH
Q 045672 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY-ITIVGVLFACSHAGFVEDGWNHFKSMK 399 (643)
Q Consensus 321 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 399 (643)
+++.|...|.+...+... -....+....++++.......- +.|.. .-...-...+.+.|++..|...+.+++
T Consensus 313 ~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 888888888775322111 1112233445555555554433 33442 112222556778899999999999988
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 045672 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAV-TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477 (643)
Q Consensus 400 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 477 (643)
+. .+-|...|....-+|.+.|.+.+|++-.+.. ...|+.. .|.-=..++....+++.|++.|++.++.+|++....
T Consensus 386 kr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 386 KR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred hc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 74 3557788999999999999998888765554 3345433 454445566777899999999999999999988777
Q ss_pred HHHHHHHHcc
Q 045672 478 ILLSNIYANS 487 (643)
Q Consensus 478 ~~l~~~~~~~ 487 (643)
..+.+++...
T Consensus 464 ~~~~rc~~a~ 473 (539)
T KOG0548|consen 464 DGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHh
Confidence 7776666543
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.37 E-value=1.1e-05 Score=70.02 Aligned_cols=106 Identities=17% Similarity=0.041 Sum_probs=90.6
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
+++...+ +.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|+..|+++++++|
T Consensus 15 ~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 15 ILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4444443 3454 3556788899999999999999987 4445 667889999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 472 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+++.++..++.++...|+.++|...++...+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999988754
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.36 E-value=6.9e-05 Score=83.01 Aligned_cols=192 Identities=16% Similarity=0.120 Sum_probs=96.6
Q ss_pred HHHHHHHHhcCChhHhHHHHHHHHhh-cCC-----chhHHhHHHHHHHhcCCHHHHHHHHhhcCCC-C-hhhHHHHHHHH
Q 045672 276 LTSVLRACTGLALLELGTQVHVHVLK-YDH-----DLILNNALLDMYCKCGSLEDAMSVFSRMIQK-D-VISWSTMISGL 347 (643)
Q Consensus 276 ~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~-----~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-~-~~~~~~li~~~ 347 (643)
|...+.-....++++.|+.+.+++.+ +.+ -..+|.+++++-.--|.-+...++|++..+- | ...|..|...|
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy 1540 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIY 1540 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33334444444444444444444444 211 1234445554444445555555555555432 2 23455555556
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHhcCCHH
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP--GREHYSCMIDLLGRAGKLQ 425 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~ 425 (643)
.+.+..++|.++|+.|.+. +.-....|...+..+.+...-+.|.+++.++.+. ++- ......-.+.+-.+.|+.+
T Consensus 1541 ~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCch
Confidence 6666666666666666543 2233445555555555555555566655555542 111 2333444445555566666
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 045672 426 EAVKLIHEM--PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470 (643)
Q Consensus 426 ~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 470 (643)
++..+|+.. ..+.-...|+.++..-.++|+.+.+..+|++++++.
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 666666554 111234456666666666666666666666666543
No 113
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00013 Score=67.71 Aligned_cols=279 Identities=14% Similarity=0.141 Sum_probs=177.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhcC
Q 045672 211 SALIDIYAKLGELRNAECVFNEMPTR---DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS-VLRACTGL 286 (643)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~ 286 (643)
++.+.-+.+..++.+|.+++..-.++ +....+.+..+|-...++..|-+.+.++-.. .|...-|.. -.+.+-+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 34444456666777777776655543 3345666667777777777777777777553 343333321 11222233
Q ss_pred ChhHhHHHHHHHHhhcCCchhHHhHH----HHHHHhcCCHHHHHHHHhhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045672 287 ALLELGTQVHVHVLKYDHDLILNNAL----LDMYCKCGSLEDAMSVFSRMIQ-KDVISWSTMISGLAQNGYSQEALKLFE 361 (643)
Q Consensus 287 ~~~~~a~~i~~~~~~~~~~~~~~~~L----i~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~ 361 (643)
+.+..|..+...+... ....+-. .......+++..++.+.+..+. .+..+.+......-+.|++++|++-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 4444444444433320 1111110 1112346777788888888763 555566666666678899999999998
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-------------C--------hHHHHHHHH---
Q 045672 362 SMKVS-RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-------------G--------REHYSCMID--- 416 (643)
Q Consensus 362 ~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-------------~--------~~~~~~li~--- 416 (643)
...+- |..| ...|+..+ +..+.|+++.|+++..+++++ |++. | ..+-+.++.
T Consensus 169 aAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 169 AALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 88764 4444 45565544 445678889999888888774 5431 1 112344444
Q ss_pred ----HHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccC
Q 045672 417 ----LLGRAGKLQEAVKLIHEMP----YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488 (643)
Q Consensus 417 ----~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 488 (643)
.+.+.|+++.|.+.+..|| ...|++|...+.-. -..+++..+.+-+.-++++.|--+.++..++-+|++..
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhH
Confidence 4568899999999999995 23577777665422 23567778888888889999877889999999999999
Q ss_pred ChhHHHHHHH
Q 045672 489 KWDEVAEVRK 498 (643)
Q Consensus 489 ~~~~a~~~~~ 498 (643)
-++-|..++.
T Consensus 325 yf~lAADvLA 334 (459)
T KOG4340|consen 325 YFDLAADVLA 334 (459)
T ss_pred HHhHHHHHHh
Confidence 9999988874
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.33 E-value=8.3e-05 Score=68.29 Aligned_cols=156 Identities=11% Similarity=0.106 Sum_probs=117.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 045672 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391 (643)
Q Consensus 312 Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 391 (643)
-+-.|.+.|+++......+.+..+. ..|...++.++++..+++..+.. +.|...|..+...|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3466888888887655544332221 01223667788888888877753 45677888899999999999999
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045672 392 WNHFKSMKKFYGIDPGREHYSCMIDLL-GRAGK--LQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKI 466 (643)
Q Consensus 392 ~~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 466 (643)
...|+...+. .+.+...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 93 ~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999998872 234677888888864 67787 59999999988 4455 5567888888899999999999999999
Q ss_pred HhcCCCCcchHH
Q 045672 467 LNLDPQDPGTYI 478 (643)
Q Consensus 467 ~~~~p~~~~~~~ 478 (643)
+++.|++..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999988765443
No 115
>PLN02789 farnesyltranstransferase
Probab=98.32 E-value=0.00024 Score=70.15 Aligned_cols=177 Identities=14% Similarity=0.116 Sum_probs=105.0
Q ss_pred CHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 045672 321 SLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYS--QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395 (643)
Q Consensus 321 ~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 395 (643)
+++++...++++.+ ++...|+...-.+.+.|+. ++++++++++.+.. +-|..+|.....++.+.|+++++++.+
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 35566666655532 2333455444344444442 45666666666532 223556666666666667777777777
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----CCHHHHHHH
Q 045672 396 KSMKKFYGIDPGREHYSCMIDLLGRA---GK----LQEAVKLIHEM-PYEP-DAVTWRALLGACKVH----RNTDLAICA 462 (643)
Q Consensus 396 ~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~ 462 (643)
+.+.+. -+-+...|+.....+.+. |. .+++.++..++ ...| |...|+-+...+... ++..+|...
T Consensus 166 ~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 776653 122344444443333332 22 23455555333 4445 556788777777663 345678888
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHccC------------------ChhHHHHHHHHH
Q 045672 463 AKKILNLDPQDPGTYILLSNIYANSQ------------------KWDEVAEVRKTM 500 (643)
Q Consensus 463 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m 500 (643)
+.+++..+|+++.++..|+++|+... ..++|.++++.+
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 88888889999999999999998643 235677777777
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.31 E-value=4.5e-05 Score=69.91 Aligned_cols=134 Identities=17% Similarity=0.126 Sum_probs=110.1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 045672 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM--PYEPDAVTWRAL 446 (643)
Q Consensus 369 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 446 (643)
.|+......+-.++...|+-+.+..+...... ..+.+......++....+.|++.+|...|.+. +-.+|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 55433335666777788888888777776554 33446667777889999999999999999988 445678899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 447 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
.-+|-+.|+++.|...|.+++++.|+++..+..|+..|.-.|+.+.|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999998887654
No 117
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.29 E-value=0.0019 Score=61.37 Aligned_cols=329 Identities=14% Similarity=0.064 Sum_probs=175.0
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCch-hHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHH---H
Q 045672 73 DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPET-FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMI---S 148 (643)
Q Consensus 73 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~ 148 (643)
+..-..-+.+.+...|.+..|..-|...++.+ |+. .++-.-...|...|+-..|+.=|+...+.-+.-+.+-| .
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 44445556677777788888888777776532 332 23333456677788888887777776653333333333 4
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHH
Q 045672 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228 (643)
Q Consensus 149 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 228 (643)
.+.++|.+++|..=|+..+.. .|+..+-. .+..++...++. ......+..+...|+...|..
T Consensus 115 vllK~Gele~A~~DF~~vl~~--~~s~~~~~---eaqskl~~~~e~-------------~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQH--EPSNGLVL---EAQSKLALIQEH-------------WVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCcchhH---HHHHHHHhHHHH-------------HHHHHHHHHHhcCCchhhHHH
Confidence 677899999999999998865 34332221 111111111100 000112222333444444444
Q ss_pred HHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchh
Q 045672 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLI 307 (643)
Q Consensus 229 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~ 307 (643)
.. ..+++. .+.|...+..-..+|...|.+..|..-+..+.+ ...+..
T Consensus 177 ~i-------------------------------~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe 224 (504)
T KOG0624|consen 177 MI-------------------------------THLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE 224 (504)
T ss_pred HH-------------------------------HHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH
Confidence 44 444432 122333444444444444444444444444444 223333
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 045672 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387 (643)
Q Consensus 308 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 387 (643)
..--+-..+...|+.+.++...++..+-|+..-. +|..-....+..+.++.|.+ ....+.
T Consensus 225 ~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~----Cf~~YKklkKv~K~les~e~----------------~ie~~~ 284 (504)
T KOG0624|consen 225 GHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL----CFPFYKKLKKVVKSLESAEQ----------------AIEEKH 284 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh----HHHHHHHHHHHHHHHHHHHH----------------HHhhhh
Confidence 3444555666777777777777666443332111 11111112223333333322 123344
Q ss_pred HHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 045672 388 VEDGWNHFKSMKKFYGIDPG-----REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNTDLAI 460 (643)
Q Consensus 388 ~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 460 (643)
+.++.+-.+...+. .|. ...+..+-.++...|++.+|+....+. .+.|| +.++---..+|.....++.|+
T Consensus 285 ~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI 361 (504)
T KOG0624|consen 285 WTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAI 361 (504)
T ss_pred HHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHH
Confidence 44454444544442 333 122334445566777888887776665 45565 567777777888888899999
Q ss_pred HHHHHHHhcCCCCcch
Q 045672 461 CAAKKILNLDPQDPGT 476 (643)
Q Consensus 461 ~~~~~~~~~~p~~~~~ 476 (643)
.-|+++.+.+++|..+
T Consensus 362 ~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 362 HDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHhcCcccHHH
Confidence 9999999998887543
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.25 E-value=9.4e-05 Score=70.63 Aligned_cols=179 Identities=15% Similarity=0.068 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCch---hHHhHHHHHHHhcCCHHHHHHHHhhcCCCC---hh---hHH
Q 045672 272 DQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDL---ILNNALLDMYCKCGSLEDAMSVFSRMIQKD---VI---SWS 341 (643)
Q Consensus 272 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~---~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~---~~---~~~ 341 (643)
....+......+...|+++.|...++.+.+ .+.+. ..+..+...|.+.|++++|...|+++.+.+ .. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 455677777888999999999999999998 43333 466788899999999999999999985421 22 455
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 045672 342 TMISGLAQN--------GYSQEALKLFESMKVSRIKPNYI-TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412 (643)
Q Consensus 342 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 412 (643)
.+..++.+. |+.++|++.|+++... .|+.. ....+... .. . ..... ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~~---------~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRLA---------GKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHHH---------HHHH
Confidence 555666554 7899999999999875 45532 22111111 00 0 00000 1123
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 413 CMIDLLGRAGKLQEAVKLIHEM----PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
.+...|.+.|++++|...+++. |..| ....|..+..++...|++++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5667788999999999988876 2223 245788888999999999999998888766555
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=4.5e-05 Score=79.23 Aligned_cols=188 Identities=16% Similarity=0.152 Sum_probs=141.7
Q ss_pred cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045672 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381 (643)
Q Consensus 302 ~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 381 (643)
++|-...-..+...+.++|-...|..+|+++ ..|.-.|.+|+..|+..+|..+..+-.+ -+||+..|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3444556667888999999999999999875 4677889999999999999999888776 37889999999888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLA 459 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 459 (643)
....--+++|+++++....+ .-..+.....+.++++++.+.++.- .+.| ...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88877888999888776542 1111222233467777777777654 4444 345677777777777888888
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
.+.|...+.++|++...|+.+.-+|.+.|+-.+|...+++..+-+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 888888888888888888888888888888888888887777655
No 120
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=7.4e-05 Score=75.71 Aligned_cols=240 Identities=13% Similarity=0.092 Sum_probs=162.9
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHH
Q 045672 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAM 326 (643)
Q Consensus 248 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~ 326 (643)
+.++|+..+|.-.|+..++.. +-+...|.-|...-+..++-..|...+.+..+ .+.+..+.-+|.-.|...|.-.+|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 456777777777777766653 22445666666666666666777777777777 4445666777777888888888888
Q ss_pred HHHhhcCCCC-hhhHHHHH---------HHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 045672 327 SVFSRMIQKD-VISWSTMI---------SGLAQNGYSQEALKLFESMK-VSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395 (643)
Q Consensus 327 ~~~~~m~~~~-~~~~~~li---------~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 395 (643)
+.|+.-.... ...|...- ..+.......+..++|-++. ..+.++|+.....|.-.|.-.|.+++|...|
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 8776542110 00000000 11222223445666776664 4443456666666666688889999999999
Q ss_pred HHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 396 KSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAV-TWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 396 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
+.+.. ++| |...||.|...++...+.++|...|++. .++|.-+ ++-.|.-+|...|.+++|...|-.++.+.+.
T Consensus 454 ~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 454 EAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99976 456 6778999999999999999999999988 7788755 7777888899999999999999999887644
Q ss_pred C----------cchHHHHHHHHHccCChh
Q 045672 473 D----------PGTYILLSNIYANSQKWD 491 (643)
Q Consensus 473 ~----------~~~~~~l~~~~~~~g~~~ 491 (643)
+ ..+|..|=.++.-.++.|
T Consensus 531 s~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 531 SRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred ccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 1 124455544455555544
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=0.0001 Score=80.20 Aligned_cols=190 Identities=11% Similarity=0.032 Sum_probs=130.0
Q ss_pred HHHHHHHHhcCChhHh-HHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcC
Q 045672 276 LTSVLRACTGLALLEL-GTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI---QKDVISWSTMISGLAQNG 351 (643)
Q Consensus 276 ~~~ll~a~~~~~~~~~-a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g 351 (643)
...+=.+.+..|..++ +.+++.++.+ ++...++.....++..-..... ..++..+-.|.....+.|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g 100 (694)
T PRK15179 31 LDLLEAALAEPGESEEAGRELLQQARQ----------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAH 100 (694)
T ss_pred HhHHHHHhcCcccchhHHHHHHHHHHH----------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcC
Confidence 3333344566665544 4666666543 3333333332222222221111 124667777888888899
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 045672 352 YSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 430 (643)
+.++|+.+++...+ +.|| ......+...+.+.+.+++|....+.... .-+-+......+..++.+.|++++|.++
T Consensus 101 ~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A~~~ 176 (694)
T PRK15179 101 RSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQADAC 176 (694)
T ss_pred CcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHHHHH
Confidence 99999999998887 5777 45666777888899999999988888876 3334566778888888999999999999
Q ss_pred HHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 045672 431 IHEMP-YEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479 (643)
Q Consensus 431 ~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 479 (643)
|++.- ..|+ ..+|.++..++...|+.++|...|+++++...+-...|..
T Consensus 177 y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 177 FERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 98882 2344 6688888888889999999999999998876544444443
No 122
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.22 E-value=0.0089 Score=60.57 Aligned_cols=78 Identities=13% Similarity=0.215 Sum_probs=55.5
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC--CCcchHHHHHH
Q 045672 71 RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE--RNVVSWTTMIS 148 (643)
Q Consensus 71 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~ 148 (643)
+-|..+|..|++-+... .+++++..++++... ++.....|..-|..-.+..+++..+++|.+... -++..|..-|+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 45777888888766554 788888888888765 334556777777777778888888888877654 46667777665
Q ss_pred HH
Q 045672 149 AY 150 (643)
Q Consensus 149 ~~ 150 (643)
--
T Consensus 95 YV 96 (656)
T KOG1914|consen 95 YV 96 (656)
T ss_pred HH
Confidence 43
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.0002 Score=74.60 Aligned_cols=217 Identities=13% Similarity=0.140 Sum_probs=165.4
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045672 202 GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281 (643)
Q Consensus 202 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 281 (643)
+++|-...-..+...+..+|-...|..+|++. ..|...|.+|+..|+..+|..+..+..+ -+||+..|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 44566667778888999999999999999885 5688899999999999999999888777 4789999988888
Q ss_pred HHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHH
Q 045672 282 ACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALK 358 (643)
Q Consensus 282 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~ 358 (643)
...+..-++.|.++...... ..-..+.....+.++++++.+.|+.-.+- -..+|-....+..+.++++.|.+
T Consensus 466 v~~d~s~yEkawElsn~~sa-----rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISA-----RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred hccChHHHHHHHHHhhhhhH-----HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 88777778888877765532 11112222223468888888888765333 34578888888888888999998
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 359 LFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 359 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
.|..-.. ..|| ...|+.+-.+|.+.+.-.+|...+.+..+ ++ ..+...|...+-...+.|.+++|.+.+.++
T Consensus 541 aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 541 AFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 8888776 4666 56788888899999999999888888887 34 444555666666777888899988888776
No 124
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.21 E-value=1.6e-05 Score=67.82 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=83.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 045672 407 GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 484 (643)
+....-.+...+...|++++|.++|+-. ...| +..-|-.|...|...|++++|+..|.++..++|++|.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445556667788999999999999887 3445 4557888888899999999999999999999999999999999999
Q ss_pred HccCChhHHHHHHHHHHh
Q 045672 485 ANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 485 ~~~g~~~~a~~~~~~m~~ 502 (643)
...|+.+.|++-|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998875
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.21 E-value=0.00042 Score=76.33 Aligned_cols=233 Identities=11% Similarity=0.057 Sum_probs=140.4
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045672 206 DVFVRSALIDIYAKLGELRNAECVFNEMPT--RD-LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282 (643)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 282 (643)
+...+..|+..|...+++++|.++.+...+ |+ ...|-.+...+.+.++.+++..+ .+.. .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID---------------S 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------h
Confidence 455667788888888889988888876543 32 33444444466666776666555 3322 1
Q ss_pred HhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHH
Q 045672 283 CTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKL 359 (643)
Q Consensus 283 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 359 (643)
.....++.....++..+.....+...+..|..+|-+.|+.++|..+++++.+ .|+...|.+.-.|+.. +.++|+++
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 2222222222223333333334444566777777777777777777777743 3556677777777777 77777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 045672 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD 439 (643)
Q Consensus 360 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 439 (643)
+.+.+.. +...+.+..+.+++.++.. ..+-+...+--+..... ...+...-
T Consensus 172 ~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~------------~~~~~~~~ 222 (906)
T PRK14720 172 LKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVL------------GHREFTRL 222 (906)
T ss_pred HHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHH------------hhhccchh
Confidence 7766542 4445566677777777765 22222222222222111 11122223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 440 AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 440 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
+.++--+-..|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 4455556666778888888889999998888888888888888776
No 126
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.18 E-value=3.3e-06 Score=53.04 Aligned_cols=35 Identities=37% Similarity=0.703 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 372 (643)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.18 E-value=0.0003 Score=76.71 Aligned_cols=192 Identities=14% Similarity=0.116 Sum_probs=137.0
Q ss_pred hHHHHHHHHHhCCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHH-HHHhhcCCchhHHhHHHHHHH
Q 045672 240 VWNSIIGGFAQNSDVDEAL-NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH-VHVLKYDHDLILNNALLDMYC 317 (643)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~-~~~~~~~~~~~~~~~Li~~y~ 317 (643)
..+.+=.+.+.-|..++|- ++..+..+ ++.+.+.......+..-. ..+.+++.+...+-.|.....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~ 97 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALE 97 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3334444555667777663 34443332 233333333333332222 222337777889999999999
Q ss_pred hcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHH
Q 045672 318 KCGSLEDAMSVFSRMIQ--K-DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY-ITIVGVLFACSHAGFVEDGWN 393 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~ 393 (643)
..|.+++|+.+++...+ | +...+..+...+.+.+++++|+..+++.... .|+. .....+..++.+.|.+++|..
T Consensus 98 ~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHHHHH
Confidence 99999999999999853 4 4557788899999999999999999999884 5664 455566678899999999999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 045672 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM--PYEPDAVTWRALL 447 (643)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll 447 (643)
+|+++.. ..+-+...+..+...+-..|+.++|...|++. ...|-...|+.++
T Consensus 176 ~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 176 CFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 9999987 33345778999999999999999999999987 2334455555444
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.17 E-value=2.3e-06 Score=53.77 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=32.0
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCH
Q 045672 40 SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADS 74 (643)
Q Consensus 40 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 74 (643)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999873
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.15 E-value=3.7e-05 Score=66.17 Aligned_cols=98 Identities=21% Similarity=0.310 Sum_probs=78.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 045672 407 GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 484 (643)
+......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3455666777788888888888888776 3334 5567777777888889999999999999888998888899999999
Q ss_pred HccCChhHHHHHHHHHHhCC
Q 045672 485 ANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 485 ~~~g~~~~a~~~~~~m~~~g 504 (643)
...|++++|...++...+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 99999999999998877643
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=0.0051 Score=61.69 Aligned_cols=135 Identities=19% Similarity=0.177 Sum_probs=64.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCH
Q 045672 347 LAQNGYSQEALKLFESMKVSRIKPNYITIV-GVLFACSHAGFVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGRAGKL 424 (643)
Q Consensus 347 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 424 (643)
+...|++++|+..++.+... .||...|. .....+.+.++.++|.+.++.+... .|+ ....-.+..+|.+.|++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCCh
Confidence 33445555555555555442 34333332 2233445555555555555555441 333 33344445555555555
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 425 QEAVKLIHEM--PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 425 ~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
.+|...++.. ..+-|...|..|..+|...|+..++... .+..|...|+|++|.......++
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHHHH
Confidence 5555555544 1222444555555555555554443332 22334455566666666655554
Q ss_pred C
Q 045672 503 R 503 (643)
Q Consensus 503 ~ 503 (643)
+
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.12 E-value=0.00033 Score=69.90 Aligned_cols=121 Identities=21% Similarity=0.200 Sum_probs=106.5
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHH
Q 045672 380 FACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNTD 457 (643)
Q Consensus 380 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~ 457 (643)
..+...|..++|+..+..+.+ ..+-|+.......+.+.+.++..+|.+.++++ ...|+ ...+-.+..++.+.|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 345678999999999999987 45557777788899999999999999999988 55677 557778889999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 458 LAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 458 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+|+..++.....+|+|+..|..|+.+|...|+..++..-+.++..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877653
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00055 Score=62.95 Aligned_cols=154 Identities=13% Similarity=0.056 Sum_probs=93.8
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 045672 310 NALLDMYCKCGSLEDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386 (643)
Q Consensus 310 ~~Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 386 (643)
..+-..|.-.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++..... +||..+++.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 344445555566666555555532 1244445556666777777777777777766532 555667777777777777
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045672 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY--EPDAVTWRALLGACKVHRNTDLAICAAK 464 (643)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 464 (643)
+.++|..-|.+..+- ..-+...++.|.-.|.-.|+++.|..++...-. ..|..+-..+.-.....|++++|+.+..
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777777766652 122344566666666667777777777766521 1255556666666667777777766655
Q ss_pred HH
Q 045672 465 KI 466 (643)
Q Consensus 465 ~~ 466 (643)
+-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.10 E-value=0.016 Score=58.84 Aligned_cols=438 Identities=13% Similarity=0.119 Sum_probs=248.4
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 045672 37 RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116 (643)
Q Consensus 37 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 116 (643)
-|+.+|+.||+-+..+ ..+++.+.++++... .+-....|..-+..-.+..+++..+.+|.+.+..-+ +...|..-+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 3788999999987766 999999999999853 233566788888888899999999999999988654 455665555
Q ss_pred HHHHc-CCChhHHH----HHHccCC------CCCcchHHHHHHH---------HHhCCChhHHHHHHHHHHHCCCCCChh
Q 045672 117 NMHVK-FSLLEEAQ----VLFDQMP------ERNVVSWTTMISA---------YCDAKMNDKALELLIFMLREGVRPNMF 176 (643)
Q Consensus 117 ~~~~~-~g~~~~A~----~~f~~m~------~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p~~~ 176 (643)
+.--+ .|+...+. +.|+-.. -..-..|+..+.- |..+.+.+...++|+++....+
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm----- 168 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM----- 168 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc-----
Confidence 43322 23333322 2222111 1233446655532 3334456677788888774321
Q ss_pred hHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC------CC-------------
Q 045672 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT------RD------------- 237 (643)
Q Consensus 177 t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------~~------------- 237 (643)
+++++++..-.......|..+..-++. -+...+-.|+++.+++.. ++
T Consensus 169 ------------~nlEkLW~DY~~fE~~IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~ 234 (656)
T KOG1914|consen 169 ------------HNLEKLWKDYEAFEQEINIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEI 234 (656)
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHH
Confidence 112222222111111111111111111 011223344444443321 00
Q ss_pred --cchHHHHHHHHHhCCCh--------hHHHHHHHH-HHHcCCCCCHHHH-HH----HHHHHhcCCh-------hHhHHH
Q 045672 238 --LVVWNSIIGGFAQNSDV--------DEALNLYKR-MKRAGFAADQSTL-TS----VLRACTGLAL-------LELGTQ 294 (643)
Q Consensus 238 --~~~~~~li~~~~~~g~~--------~~A~~~~~~-m~~~g~~p~~~t~-~~----ll~a~~~~~~-------~~~a~~ 294 (643)
+..|-.+|.---.++-- ....-.+++ |.--+..|+..-. .. .-+.+...|+ .+++..
T Consensus 235 ~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 235 QQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAAS 314 (656)
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHH
Confidence 11243333322221110 011111111 1112333332211 00 1112222333 345555
Q ss_pred HHHHHhh--cCCchhHHhHHHHHHHhcC---CHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045672 295 VHVHVLK--YDHDLILNNALLDMYCKCG---SLEDAMSVFSRMIQ----KDVISWSTMISGLAQNGYSQEALKLFESMKV 365 (643)
Q Consensus 295 i~~~~~~--~~~~~~~~~~Li~~y~~~g---~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 365 (643)
+++..+. ...+..+|.++.+.--..- ..+.....+++... .-..+|-..+..-.+..-.+.|..+|.+..+
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~ 394 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE 394 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 5555555 3334444544443221111 13334444444422 2234677788877777778999999999999
Q ss_pred CCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--
Q 045672 366 SRIKP-NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM---PYEPD-- 439 (643)
Q Consensus 366 ~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~-- 439 (643)
.+..+ +....++++.-++ +++..-|.++|+.=.+.+| .++.--.+.++-+.+.++-..|..+|++. .+.||
T Consensus 395 ~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks 471 (656)
T KOG1914|consen 395 DKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKS 471 (656)
T ss_pred ccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhh
Confidence 88888 5556667776554 6789999999998777544 34455578889999999999999999988 22333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----cchHHHHHHHHHccCChhHHHHHHHHH
Q 045672 440 AVTWRALLGACKVHRNTDLAICAAKKILNLDPQD----PGTYILLSNIYANSQKWDEVAEVRKTM 500 (643)
Q Consensus 440 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 500 (643)
...|..+|.--...|+...+.++-++....-|.+ ...-..+.+.|.-.+.+..-..-++.|
T Consensus 472 ~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 472 KEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 4689999999999999999999999888766622 123455667777777766555545444
No 134
>PLN02789 farnesyltranstransferase
Probab=98.10 E-value=0.003 Score=62.54 Aligned_cols=224 Identities=13% Similarity=0.070 Sum_probs=126.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCC-hhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcC
Q 045672 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQS-TLTSVLRACTGLA-LLELGTQVHVHVLK-YDHDLILNNALLDMYCKCG 320 (643)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g 320 (643)
+-..+...++.++|+.+..++++. .|+.. .+..--.++...+ .++++...+..+.+ .+.+..+|+...-.+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence 334444556666777776666653 34333 3333333334444 45666666666666 4445555654444444555
Q ss_pred CH--HHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CC----H
Q 045672 321 SL--EDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA---GF----V 388 (643)
Q Consensus 321 ~~--~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~---g~----~ 388 (643)
+. +++...++.+.+ +|..+|+...-.+...|+++++++.++++++.+. -|...|+.....+.+. |. .
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccH
Confidence 42 556666666633 4566777777777778888888888888887653 2344455444444333 22 2
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC--------
Q 045672 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA----GKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHR-------- 454 (643)
Q Consensus 389 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-------- 454 (643)
++...+...+.+ ..+-+...|+-+..+|... ++..+|.+++.+. ...| +......|+..+....
T Consensus 200 e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~ 277 (320)
T PLN02789 200 DSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRD 277 (320)
T ss_pred HHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhh
Confidence 455666655554 2334566777776666663 3445677777665 3333 4556666777765422
Q ss_pred ----------CHHHHHHHHHHHHhcCCC
Q 045672 455 ----------NTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 455 ----------~~~~a~~~~~~~~~~~p~ 472 (643)
..++|..+++.+-+.+|-
T Consensus 278 ~~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 278 TVDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hhhccccccccHHHHHHHHHHHHhhCcH
Confidence 235566666666444553
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=7.3e-05 Score=75.29 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=96.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACK 451 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 451 (643)
...+|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| |...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445666666777888888888888763 244 3445677777777778888887766 2233 5555665666688
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
..++++.|+.+++++.+..|++..+|..|+.+|.+.|++++|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998775
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.005 Score=56.78 Aligned_cols=70 Identities=20% Similarity=0.152 Sum_probs=35.2
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhH
Q 045672 423 KLQEAVKLIHEM--PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492 (643)
Q Consensus 423 ~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 492 (643)
.+.+|.-+|++| +..|+..+.+-...++...|++++|+.+++.++..+++++.++..++-.-...|+-.+
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 344444444444 1334444455555555555555555555555555555555555555555445554433
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.03 E-value=6.7e-06 Score=51.24 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=29.6
Q ss_pred cchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCC
Q 045672 39 SSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRA 72 (643)
Q Consensus 39 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 72 (643)
+.+||++|.+|++.|+++.|+++|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4688999999999999999999999998888877
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.02 E-value=1e-05 Score=50.40 Aligned_cols=33 Identities=30% Similarity=0.591 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 370 (643)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888889999999989999999998888877
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=0.00022 Score=71.94 Aligned_cols=128 Identities=11% Similarity=0.034 Sum_probs=99.9
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 045672 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387 (643)
Q Consensus 308 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 387 (643)
+..+|+..+...++++.|..+|+++.+.++..+-.++..+...++..+|++++++..... +-+...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 345667777778899999999999987777677778888888888899999998888642 2344555555566788899
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 045672 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP 438 (643)
Q Consensus 388 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 438 (643)
.+.|..+.+++.+ -.+-+..+|..|+..|.+.|++++|+..++.+|..|
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999998886 233356689999999999999999999999887544
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.0023 Score=58.47 Aligned_cols=164 Identities=14% Similarity=0.117 Sum_probs=112.7
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhhHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 045672 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTM---ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390 (643)
Q Consensus 314 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 390 (643)
-+...+|+.+.|...++.+..+=+.++... ..-+-..|++++|+++++..++.. +.|.+++.-=+...-..|.--+
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLE 138 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHH
Confidence 334456777777777776643322222221 112445788999999999988875 5566677655555556677678
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH---cCCHHHHHHHHHH
Q 045672 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKV---HRNTDLAICAAKK 465 (643)
Q Consensus 391 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~---~g~~~~a~~~~~~ 465 (643)
|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -..|- ...+..+...+.. ..+.+.|.+.|.+
T Consensus 139 aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 139 AIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred HHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888887777 46778899999999999999999999988888 33454 3344455555332 3478889999999
Q ss_pred HHhcCCCCcchHHHH
Q 045672 466 ILNLDPQDPGTYILL 480 (643)
Q Consensus 466 ~~~~~p~~~~~~~~l 480 (643)
.+++.|.+...+..+
T Consensus 217 alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 217 ALKLNPKNLRALFGI 231 (289)
T ss_pred HHHhChHhHHHHHHH
Confidence 999999665554444
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.96 E-value=0.0003 Score=60.45 Aligned_cols=113 Identities=9% Similarity=0.116 Sum_probs=85.0
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 045672 359 LFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PY 436 (643)
Q Consensus 359 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 436 (643)
+|++... ..|+ ......+...+...|++++|.+.|+.+... .+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455544 3444 344556667778888999999888888763 3446778888888888999999999888876 33
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 045672 437 EP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475 (643)
Q Consensus 437 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 475 (643)
.| +...+..+...+...|+++.|...++++++.+|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 4567777777888999999999999999999998764
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.91 E-value=0.005 Score=68.15 Aligned_cols=169 Identities=13% Similarity=0.121 Sum_probs=92.4
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 045672 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIY 217 (643)
Q Consensus 138 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y 217 (643)
.+...|..|+..|...+++++|.++.+...+. .|+...+-.. +...|
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~-------------------------------~G~l~ 75 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYI-------------------------------SGILS 75 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHH-------------------------------HHHHH
Confidence 35566777888888888888888888765543 4544333221 11133
Q ss_pred HHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHH
Q 045672 218 AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297 (643)
Q Consensus 218 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 297 (643)
.+.++.+++..+ .++.......++.-...+...|... .-+...+..+..+|.+.|..+++..+++
T Consensus 76 ~q~~~~~~~~lv-------------~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~ye 140 (906)
T PRK14720 76 LSRRPLNDSNLL-------------NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWE 140 (906)
T ss_pred Hhhcchhhhhhh-------------hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHH
Confidence 334443333222 2333333334443333333344332 2233355555556666666666666666
Q ss_pred HHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045672 298 HVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366 (643)
Q Consensus 298 ~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 366 (643)
++.+ .+.+..+.|.+...|+.. ++++|..++.+.. ..|...+++.++.++|.++...
T Consensus 141 r~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 141 RLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc
Confidence 6666 444556666777777766 7777776655442 2355556666777777766653
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.91 E-value=0.055 Score=58.42 Aligned_cols=214 Identities=13% Similarity=0.119 Sum_probs=119.5
Q ss_pred HhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHH--ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhH
Q 045672 50 CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCL--ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127 (643)
Q Consensus 50 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 127 (643)
...+++..|+....++++. .||. .|..+++++. +.|..++|..+++.....+.. |..+...+-.+|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4457788888888777764 3443 3555666653 678888888777776655543 67778888888888888888
Q ss_pred HHHHHccCCC--CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH-------------
Q 045672 128 AQVLFDQMPE--RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR------------- 192 (643)
Q Consensus 128 A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~------------- 192 (643)
|..++++..+ |+......+..+|++.+.+.+-.+.--+|.+ .+.-+.+.|-++++...+...-.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 8888888776 4444444555667776666443333222222 22334555555555432211100
Q ss_pred HHHHHHHHhC-CCCchhHHHHHHHHHHHcCCHHHHHHHHhh-----CCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 045672 193 QLHCGIIKVG-FESDVFVRSALIDIYAKLGELRNAECVFNE-----MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266 (643)
Q Consensus 193 ~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (643)
...+.+++.+ -..+..-.---....-..|.+++|..++.. ...-+...-+--+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 1122222222 111111111122233456677777777622 2222333444555666667777777777777776
Q ss_pred cC
Q 045672 267 AG 268 (643)
Q Consensus 267 ~g 268 (643)
.|
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 65
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.0031 Score=57.69 Aligned_cols=162 Identities=13% Similarity=0.163 Sum_probs=126.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV-LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 417 (643)
.|..++-+....|+.+.|...++++... + |...-...+ .--+-..|++++|.++++.+.++ -+.|...|-.=+.+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 4555666677789999999999998775 2 543322221 11234568999999999999984 35567777777777
Q ss_pred HHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccC---ChhH
Q 045672 418 LGRAGKLQEAVKLIHEM--PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ---KWDE 492 (643)
Q Consensus 418 ~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~ 492 (643)
.-..|+--+|++-+... .+-.|...|.-+...|...|+++.|.-.+++++-..|-++..+..+++.+.-.| +.+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77788888888776655 455799999999999999999999999999999999999999999999987666 5667
Q ss_pred HHHHHHHHHhCC
Q 045672 493 VAEVRKTMRARG 504 (643)
Q Consensus 493 a~~~~~~m~~~g 504 (643)
|++++.+..+-.
T Consensus 210 arkyy~~alkl~ 221 (289)
T KOG3060|consen 210 ARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHhC
Confidence 888888877644
No 145
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0026 Score=58.59 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=112.1
Q ss_pred cCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 045672 350 NGYSQEAL-KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428 (643)
Q Consensus 350 ~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 428 (643)
-++.++-+ ++.+.+.......+......-...|.+.|++++|.+..... -+.+....=+..+.|..+++-|.
T Consensus 85 e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~ 157 (299)
T KOG3081|consen 85 ESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAE 157 (299)
T ss_pred cchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433 34555555545555455555556789999999998887652 23455555567788899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 429 KLIHEMPYEPDAVTWRALLGACKV----HRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 429 ~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+.+++|..-.+..|.+.|..++.+ .+.+..|.-+|+++-+.-|+.+.+....+.++...|+|++|..+++...++.
T Consensus 158 ~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 158 KELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 999999654567788877777654 3478899999999999888888899999999999999999999999998764
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.80 E-value=2.3e-05 Score=47.54 Aligned_cols=31 Identities=13% Similarity=0.350 Sum_probs=27.3
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHhCCC
Q 045672 40 SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGV 70 (643)
Q Consensus 40 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 70 (643)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988764
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.80 E-value=0.0008 Score=58.56 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=58.3
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCCHHH
Q 045672 385 AGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEMP-YEPDA----VTWRALLGACKVHRNTDL 458 (643)
Q Consensus 385 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~----~~~~~ll~~~~~~g~~~~ 458 (643)
.++...+...++.+.+.++-.| .....-.+...+...|++++|.+.|+... ..||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555321111 11223334455556666666666665551 11222 123334455566666666
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHH
Q 045672 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKT 499 (643)
Q Consensus 459 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 499 (643)
|+..++.. ...+-.+..+..++++|...|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 22222445666677777777777777776654
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.77 E-value=0.00027 Score=55.79 Aligned_cols=92 Identities=23% Similarity=0.282 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccC
Q 045672 411 YSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 488 (643)
+..+...+...|++++|...+++. ...|+ ...+..+...+...++++.|...+++.....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777888888888888776 33343 3566677777888899999999999999888888888889999999999
Q ss_pred ChhHHHHHHHHHHh
Q 045672 489 KWDEVAEVRKTMRA 502 (643)
Q Consensus 489 ~~~~a~~~~~~m~~ 502 (643)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998887764
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.77 E-value=3.4e-05 Score=46.77 Aligned_cols=31 Identities=32% Similarity=0.657 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRI 368 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 368 (643)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.73 E-value=4.2e-05 Score=59.44 Aligned_cols=78 Identities=22% Similarity=0.336 Sum_probs=46.5
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHH
Q 045672 421 AGKLQEAVKLIHEM-PYEP---DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEV 496 (643)
Q Consensus 421 ~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 496 (643)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666555 1112 334455566666677777777777766 555565555666667777777777777777
Q ss_pred HHH
Q 045672 497 RKT 499 (643)
Q Consensus 497 ~~~ 499 (643)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.73 E-value=9.7e-05 Score=54.88 Aligned_cols=64 Identities=22% Similarity=0.257 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccC-ChhHHHHHHHHHHh
Q 045672 439 DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ-KWDEVAEVRKTMRA 502 (643)
Q Consensus 439 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 502 (643)
+..+|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46688888899999999999999999999999999999999999999999 79999999988765
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.70 E-value=0.00051 Score=57.37 Aligned_cols=93 Identities=15% Similarity=0.105 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---cchHHHHHH
Q 045672 411 YSCMIDLLGRAGKLQEAVKLIHEM-PYEPD----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQD---PGTYILLSN 482 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 482 (643)
+..++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344445555556666665555554 11222 1234445555666666666666666666655543 334556666
Q ss_pred HHHccCChhHHHHHHHHHHhC
Q 045672 483 IYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 483 ~~~~~g~~~~a~~~~~~m~~~ 503 (643)
++.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666554
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.64 E-value=0.001 Score=55.57 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=64.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 045672 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD----AVTWRALLG 448 (643)
Q Consensus 375 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~ 448 (643)
+..+...+...|++++|.+.|..+.+.+.-.+ ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555566666666666666655311111 1234555666777777777777777665 22232 345666667
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 045672 449 ACKVHRNTDLAICAAKKILNLDPQDPGTY 477 (643)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 477 (643)
.+...|+.+.|...++++++..|+++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 77788888888888888888888775443
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.60 E-value=0.00018 Score=52.61 Aligned_cols=58 Identities=26% Similarity=0.330 Sum_probs=48.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 446 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455778889999999999999999988889999999999999999999998888753
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.60 E-value=0.0023 Score=55.66 Aligned_cols=125 Identities=15% Similarity=0.139 Sum_probs=96.1
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCC---HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCch--hHHHH
Q 045672 40 SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD---SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPET--FLVNI 114 (643)
Q Consensus 40 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~ 114 (643)
..|..++..+. .++...+...++.+.... +.+ ....-.+...+...|++++|...|+.++.....++. ...-.
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 35777777774 889999999999998753 223 233444557778899999999999999997744432 34556
Q ss_pred HHHHHHcCCChhHHHHHHccCCCC--CcchHHHHHHHHHhCCChhHHHHHHHHH
Q 045672 115 LLNMHVKFSLLEEAQVLFDQMPER--NVVSWTTMISAYCDAKMNDKALELLIFM 166 (643)
Q Consensus 115 li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 166 (643)
|...+...|++++|+..++....+ ....+......|.+.|+.++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 788899999999999999887653 3445677788999999999999999864
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.53 E-value=0.0047 Score=65.44 Aligned_cols=61 Identities=23% Similarity=0.192 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 441 VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 441 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..+.++.-.....|++++|...++++++++| +..+|..++.+|...|+.++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444344445666666666666666666 345666666666666666666666655544
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.50 E-value=0.00074 Score=68.39 Aligned_cols=107 Identities=16% Similarity=0.051 Sum_probs=84.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 045672 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRN 455 (643)
Q Consensus 378 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 455 (643)
-...+...|++++|++.|..+.+. -+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345566789999999999999873 3345678888888999999999999998887 4455 45578888888999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHc
Q 045672 456 TDLAICAAKKILNLDPQDPGTYILLSNIYAN 486 (643)
Q Consensus 456 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 486 (643)
+++|+..++++++++|+++.....+..+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988776666554433
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.50 E-value=0.0013 Score=59.13 Aligned_cols=81 Identities=19% Similarity=0.139 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 045672 409 EHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483 (643)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 483 (643)
..+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|+..++++++..|.++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 35566666777777777777777765 22222 34677777788889999999999999999999888888888888
Q ss_pred HHccCC
Q 045672 484 YANSQK 489 (643)
Q Consensus 484 ~~~~g~ 489 (643)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
No 159
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.42 E-value=0.0052 Score=59.97 Aligned_cols=143 Identities=15% Similarity=0.201 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA-CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...+...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467778888888888899999999987543 2233444433333 33356777799999999985 4566778899999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 045672 417 LLGRAGKLQEAVKLIHEM-PYEPDA----VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 484 (643)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+....+.+++.+.-|++. ....+.+-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHHHh
Confidence 999999999999999987 222333 4899999999999999999999999999988754 344444444
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.0014 Score=61.60 Aligned_cols=97 Identities=21% Similarity=0.207 Sum_probs=66.1
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDA-VTWRALLGACKVHRNTDL 458 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~ 458 (643)
..+.+++++|...|...++ +.| |...|..-..+|.+.|.++.|.+-.+.. .+.|.. .+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3456677777777777665 333 4555555566777777777777665554 455543 377888888888888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHH
Q 045672 459 AICAAKKILNLDPQDPGTYILLS 481 (643)
Q Consensus 459 a~~~~~~~~~~~p~~~~~~~~l~ 481 (643)
|++.|+++++++|++......|-
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHH
Confidence 88888888888888874444443
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.41 E-value=0.0017 Score=58.20 Aligned_cols=93 Identities=13% Similarity=-0.043 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 482 (643)
...|..+...+...|++++|...|++. ...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445667777788889999999888877 22232 3478888888999999999999999999999998888888888
Q ss_pred HHH-------ccCChhHHHHHHHHH
Q 045672 483 IYA-------NSQKWDEVAEVRKTM 500 (643)
Q Consensus 483 ~~~-------~~g~~~~a~~~~~~m 500 (643)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788888776666554
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.00052 Score=64.38 Aligned_cols=87 Identities=24% Similarity=0.256 Sum_probs=76.8
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHH
Q 045672 416 DLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493 (643)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 493 (643)
+-+.+.+++++|+..|.+. .+.| |.+.|..-..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456789999999999887 6666 5666677778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 045672 494 AEVRKTMRA 502 (643)
Q Consensus 494 ~~~~~~m~~ 502 (643)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999987765
No 163
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.41 E-value=0.0022 Score=50.35 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 045672 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 400 (643)
|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|.+.++...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555566666666665555431 11223344444444455555555555554443
No 164
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.39 E-value=0.02 Score=59.11 Aligned_cols=207 Identities=13% Similarity=0.168 Sum_probs=107.5
Q ss_pred HHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 045672 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT 277 (643)
Q Consensus 198 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 277 (643)
+.++|-.|+... +...++-.|++.+|-++|.+- |.-..|+++|.+|+--
T Consensus 626 ~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~------------------G~enRAlEmyTDlRMF---------- 674 (1081)
T KOG1538|consen 626 RKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS------------------GHENRALEMYTDLRMF---------- 674 (1081)
T ss_pred HHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc------------------CchhhHHHHHHHHHHH----------
Confidence 444555565544 445566678888888887653 4444555555444321
Q ss_pred HHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 045672 278 SVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357 (643)
Q Consensus 278 ~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 357 (643)
-..+-+...|.-++-+.+.+.-.....++.--.+...++...|+.++|..+ ...+|-.+-++
T Consensus 675 D~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i------------------~~d~gW~d~li 736 (1081)
T KOG1538|consen 675 DYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEI------------------CGDHGWVDMLI 736 (1081)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhh------------------hhcccHHHHHH
Confidence 011111222222222222221111111111112345566677777777554 34455555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC-C
Q 045672 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP-Y 436 (643)
Q Consensus 358 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 436 (643)
++-+++.. .+..+...+...+.+...+..|-++|.+|-. ...++++....+++++|..+-++.| .
T Consensus 737 dI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 737 DIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred HHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccc
Confidence 55554432 2334455555555566667777788877743 2456777788888888888888774 3
Q ss_pred CCCHHH-HHH----------HHHHHHHcCCHHHHHHHHHHHH
Q 045672 437 EPDAVT-WRA----------LLGACKVHRNTDLAICAAKKIL 467 (643)
Q Consensus 437 ~p~~~~-~~~----------ll~~~~~~g~~~~a~~~~~~~~ 467 (643)
.||+.. |.. .-.++.+.|+..+|.++++++.
T Consensus 803 ~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 803 KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 455431 111 1134455555666666665553
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.39 E-value=0.0033 Score=63.72 Aligned_cols=104 Identities=10% Similarity=-0.044 Sum_probs=82.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 422 (643)
....+...|++++|+++|++.++.. +-+...+..+..++.+.|++++|+..++.+.+. -+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 3456678899999999999998853 334677778888999999999999999999873 2346778888999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 045672 423 KLQEAVKLIHEM-PYEPDAVTWRALLGA 449 (643)
Q Consensus 423 ~~~~A~~~~~~m-~~~p~~~~~~~ll~~ 449 (643)
++++|...|++. ...|+.......+..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999887 555665554444433
No 166
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.38 E-value=0.17 Score=50.05 Aligned_cols=105 Identities=21% Similarity=0.298 Sum_probs=72.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChh
Q 045672 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289 (643)
Q Consensus 210 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 289 (643)
.+..|.-+...|+...|.++-.+..-||-.-|-..+.+++..++|++-..+-.. +-.+..|-.++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455566778888888888888778888888888888888888877665321 12346777777777777777
Q ss_pred HhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHH
Q 045672 290 ELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSV 328 (643)
Q Consensus 290 ~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~ 328 (643)
.+|..+...+ .+..-+.+|.++|++.+|.+.
T Consensus 254 ~eA~~yI~k~--------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 254 KEASKYIPKI--------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHhC--------ChHHHHHHHHHCCCHHHHHHH
Confidence 7766655542 125566777777777777554
No 167
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.37 E-value=0.18 Score=49.90 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=56.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 045672 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392 (643)
Q Consensus 313 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 392 (643)
+.-+...|+...|.++-.+..-||..-|-..+.+|+..+++++-..+... . -.++-|..++.+|.+.|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCCCHHHHH
Confidence 34444556666666666666556666666666666666666554443221 1 12355556666666666666666
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 045672 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431 (643)
Q Consensus 393 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 431 (643)
.+...+. +..-+.+|.++|++.+|.+.-
T Consensus 258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHH
Confidence 5554421 133455666666666665543
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.35 E-value=0.0078 Score=54.11 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=88.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 045672 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN--YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413 (643)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 413 (643)
....+..+...+...|++++|+..|++.......+. ...+..+...+.+.|++++|...+.+..+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 345677777788888899999998888876443332 356677777888888888888888887762 2224556666
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCC
Q 045672 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 489 (643)
+...|...|+...+..-++.. ...++.|.+.++++++.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 677777777766554332221 123677889999999988876 5555565555554
No 169
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0078 Score=57.01 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=86.4
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHc--CCHHHHHHHHHHHHhcCCCCcchHHH
Q 045672 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGAC-KVH--RNTDLAICAAKKILNLDPQDPGTYIL 479 (643)
Q Consensus 405 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~--g~~~~a~~~~~~~~~~~p~~~~~~~~ 479 (643)
+-|...|..|...|.+.|+++.|..-|.+. .+.| +...+..+..++ ... ....++..++++++..+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 557889999999999999999999999887 3333 455666666663 232 35678999999999999999999999
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCcCC
Q 045672 480 LSNIYANSQKWDEVAEVRKTMRARGITKEP 509 (643)
Q Consensus 480 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 509 (643)
|+..+...|++.+|...|+.|.+..-..+|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999987644333
No 170
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0068 Score=59.37 Aligned_cols=156 Identities=16% Similarity=0.085 Sum_probs=109.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHH-------------H
Q 045672 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH-------------Y 411 (643)
Q Consensus 345 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------------~ 411 (643)
.++...|+.++|...--..++.. ..+......--.++.-.++.+.|...|++..+ +.|+... +
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHH
Confidence 45667888888887766655432 11111111111233456778888888877654 3444221 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 412 SCMIDLLGRAGKLQEAVKLIHEM-PYEP-----DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
.-=..-..+.|++.+|.+.+.+. .+.| +...|........+.|+.++|+.--+++++++|.-..+|..-++++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 11123456889999999999887 4444 44556666667788999999999999999999998889999999999
Q ss_pred ccCChhHHHHHHHHHHhCC
Q 045672 486 NSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 486 ~~g~~~~a~~~~~~m~~~g 504 (643)
..++|++|.+-+++..+..
T Consensus 333 ~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999998887643
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.32 E-value=0.0003 Score=52.04 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=45.0
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
...|++++|+..++++++..|++..++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999889999999999999999999988877653
No 172
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.29 E-value=0.0036 Score=49.79 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=69.6
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhCCC-CCCHhhHHHHHHHHHccC--------CHHHHHHHHHHHHHcCCCCchhH
Q 045672 41 SLLDDFTRFCYQRDLPRAMKAMHAMQCHGV-RADSVTYAELIKCCLARH--------AVEEAKLVHNHVLSGGFEPETFL 111 (643)
Q Consensus 41 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 111 (643)
|-...|..+..++++.....+|+.+++.|+ .|+..+|+.++.+.+++. ++-....+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 455667777788999999999999999999 899999999999987643 24567889999999999999999
Q ss_pred HHHHHHHHHc
Q 045672 112 VNILLNMHVK 121 (643)
Q Consensus 112 ~~~li~~~~~ 121 (643)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.29 E-value=0.0011 Score=48.38 Aligned_cols=61 Identities=25% Similarity=0.395 Sum_probs=48.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 414 MIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999887 44564 55788888889999999999999999999999874
No 174
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.26 E-value=0.19 Score=49.32 Aligned_cols=283 Identities=16% Similarity=0.133 Sum_probs=189.3
Q ss_pred HHHHHHHHH--HcCCHHHHHHHHhhCC---CCCcchHHHHHHH--HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045672 210 RSALIDIYA--KLGELRNAECVFNEMP---TRDLVVWNSIIGG--FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282 (643)
Q Consensus 210 ~~~li~~y~--~~g~~~~A~~~f~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 282 (643)
|.+|-.++. -.|+-..|.+.-.+.. ..|....-.++.+ -.-.|+++.|.+-|+.|... ...-...+..+.-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyle 163 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLE 163 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHH
Confidence 444444443 4567777777765543 2354444444443 34469999999999999863 11111223344444
Q ss_pred HhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhc-----CCCChh--hHHHHHHHHHh---cC
Q 045672 283 CTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRM-----IQKDVI--SWSTMISGLAQ---NG 351 (643)
Q Consensus 283 ~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m-----~~~~~~--~~~~li~~~~~---~g 351 (643)
.-+.|+.+.+.++-+.+-. -+.-.-.+.+++...+..|+++.|+++.+.- .++|+. .--.|+.+-+. .-
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 5678999999998888877 4444567788999999999999999999865 344543 22334433222 33
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH--HH
Q 045672 352 YSQEALKLFESMKVSRIKPNYI-TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE--AV 428 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~--A~ 428 (643)
+...|.+.-.+..+ +.||-+ .-..-..++.+.|++.++-.+++.+-+. .|.+..+...+ +.|.|+... ..
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlk 316 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTALDRLK 316 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHH
Confidence 56667766665554 677744 3334556889999999999999998763 56665554433 456665322 21
Q ss_pred H--HHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHcc-CChhHHHHHHHHHHhC
Q 045672 429 K--LIHEMPYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS-QKWDEVAEVRKTMRAR 503 (643)
Q Consensus 429 ~--~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 503 (643)
+ -+.. ++|| ..+..++..+....|++..|..-.+.+....|.. ..|..|+++-... |+-.+++..+.+..+.
T Consensus 317 Ra~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 317 RAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1 1233 3554 4566777788889999999999999999999965 5899999998554 9999998888776643
No 175
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.25 E-value=0.0009 Score=50.24 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=50.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
..+...++++.|.+.++++++++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457888999999999999999999999999999999999999999999999888654
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.24 E-value=0.016 Score=56.77 Aligned_cols=107 Identities=18% Similarity=0.150 Sum_probs=62.1
Q ss_pred HHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhCC---CC-----CCHH-HH
Q 045672 378 VLFACSHA-GFVEDGWNHFKSMKKFYGIDPG----REHYSCMIDLLGRAGKLQEAVKLIHEMP---YE-----PDAV-TW 443 (643)
Q Consensus 378 ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~-----p~~~-~~ 443 (643)
+...|... |++++|.+.|+...+-+..... ..++..+...+.+.|++++|.++|++.. .. .+.. .+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 34456565 7777777777776653322222 2355667788888889999888888761 11 1111 12
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-----chHHHHHHHH
Q 045672 444 RALLGACKVHRNTDLAICAAKKILNLDPQDP-----GTYILLSNIY 484 (643)
Q Consensus 444 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-----~~~~~l~~~~ 484 (643)
...+-.+...||...|...+++..+.+|.-. .....|+.+|
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 2223345667889999999999888877522 2344455555
No 177
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.23 E-value=0.046 Score=51.96 Aligned_cols=169 Identities=12% Similarity=0.058 Sum_probs=96.6
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCh---hh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--c
Q 045672 314 DMYCKCGSLEDAMSVFSRMIQKDV---IS---WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH--A 385 (643)
Q Consensus 314 ~~y~~~g~~~~A~~~~~~m~~~~~---~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~ 385 (643)
..+.+.|++++|.+.|+.+....+ .. .-.++.++.+.+++++|...|++..+.-..-...-+...+.+.+. .
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence 334567777777777777743211 11 123455667777788888888777764221112333333333321 0
Q ss_pred ---------------CC---HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH--H
Q 045672 386 ---------------GF---VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR--A 445 (643)
Q Consensus 386 ---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~--~ 445 (643)
.+ ..+|...|+.+.+. |=...-..+|...+..+. +...-. .
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~---~~la~~e~~ 180 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLK---DRLAKYELS 180 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHH---HHHHHHHHH
Confidence 01 12333444444432 222222334443333321 111111 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 446 LLGACKVHRNTDLAICAAKKILNLDPQD---PGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 446 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
+..-|.+.|.+.-|..-++.+++.-|+. ..+...+..+|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3344788999999999999999987764 4577889999999999999999887664
No 178
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.22 E-value=0.25 Score=48.45 Aligned_cols=248 Identities=17% Similarity=0.154 Sum_probs=116.3
Q ss_pred HHHHHHHHHh--CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH--hcCChhHhHHHHHHHHhhcCCc-hhHHhHHHHH
Q 045672 241 WNSIIGGFAQ--NSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC--TGLALLELGTQVHVHVLKYDHD-LILNNALLDM 315 (643)
Q Consensus 241 ~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~i~~~~~~~~~~-~~~~~~Li~~ 315 (643)
|.+|-.++.. .|+-..|.++-.+-.+. +..|...+..++.+- .-.|+.+.+++-|+.|...+.. ..-...|.-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 3444444433 34555554444333221 334444455555443 2346666677666666652221 1112233333
Q ss_pred HHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhc---cC
Q 045672 316 YCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESMKVSR-IKPNYI--TIVGVLFACSH---AG 386 (643)
Q Consensus 316 y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~---~g 386 (643)
--+.|..+.|...-++.-.. -...|.+.+...+..|+++.|+++.+.-.... +.++.. .-..|+.+-.. ..
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 34566666666655554221 22355666666667777777777666544332 334421 12223322211 12
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHH-HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHH-HHHH
Q 045672 387 FVEDGWNHFKSMKKFYGIDPGREH-YSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLGACKVHRNTDLA-ICAA 463 (643)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a-~~~~ 463 (643)
+...|...-.+.. .+.|+..- --.-..+|.+.|++.++-.+++.+ +..|....|.....+ +.|+.... .+-.
T Consensus 244 dp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~a--r~gdta~dRlkRa 318 (531)
T COG3898 244 DPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRA--RSGDTALDRLKRA 318 (531)
T ss_pred ChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHh--cCCCcHHHHHHHH
Confidence 3334443333222 34454332 122235566667776666666666 444555555443322 33433222 1223
Q ss_pred HHHHhcCCCCcchHHHHHHHHHccCChhHHH
Q 045672 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVA 494 (643)
Q Consensus 464 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 494 (643)
+++.++.|++......+..+-...|++..|+
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~AR 349 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAAR 349 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHH
Confidence 3344456666666666666655555554443
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.19 E-value=0.0013 Score=51.05 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHH
Q 045672 350 NGYSQEALKLFESMKVSRI-KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEA 427 (643)
Q Consensus 350 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 427 (643)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. .+ ..| +......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4566666666666655432 11333344455566666666666666655 11 112 122333345556666666666
Q ss_pred HHHHHh
Q 045672 428 VKLIHE 433 (643)
Q Consensus 428 ~~~~~~ 433 (643)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665543
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.18 E-value=0.2 Score=49.04 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHH
Q 045672 41 SLLDDFTRFCYQRDLPRAMKAMHAMQCH----GVRAD-SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNIL 115 (643)
Q Consensus 41 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 115 (643)
.|+..-..|-..+++++|.+.|.+.... +-+.+ ...|......+.+ .++++|.. .+...
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~---------------~~~~A 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIE---------------CYEKA 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHH---------------HHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHH---------------HHHHH
Confidence 4666666677777777777777665321 10000 0111211121111 13333322 33444
Q ss_pred HHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhC-CChhHHHHHHHHHH
Q 045672 116 LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA-KMNDKALELLIFML 167 (643)
Q Consensus 116 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~ 167 (643)
+..|...|++..|-+++. .+...|-.. |++++|++.|++..
T Consensus 101 ~~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAA 142 (282)
T ss_dssp HHHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556666777666655543 345566666 77778877777765
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.17 E-value=0.012 Score=51.12 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=55.2
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CcchH
Q 045672 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM---PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ--DPGTY 477 (643)
Q Consensus 403 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~ 477 (643)
.+.|+...--.|...+.+.|+..||...|++. .+..|......+..+....+++..|...++++.+..|. .|...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 34455555555555555666666666555554 23345555555555555555666666666655555543 34455
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHh
Q 045672 478 ILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 478 ~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..++..|...|++++|+.-|+...+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH
Confidence 5555556666666656555555544
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.14 E-value=0.029 Score=50.16 Aligned_cols=81 Identities=10% Similarity=-0.011 Sum_probs=54.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 045672 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN--YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414 (643)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 414 (643)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|+..++...+. .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 34567777777888888888888888876432221 246777777888888888888888877652 22234445555
Q ss_pred HHHHH
Q 045672 415 IDLLG 419 (643)
Q Consensus 415 i~~~~ 419 (643)
...|.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
No 183
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.14 E-value=0.0063 Score=61.86 Aligned_cols=119 Identities=11% Similarity=0.059 Sum_probs=95.8
Q ss_pred CCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC----CCcc
Q 045672 68 HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSG--GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE----RNVV 141 (643)
Q Consensus 68 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~ 141 (643)
.+.+.+......+++.+....+++.+..++-..... ....-..+..++++.|.+.|..+.+..+++.=.. ||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344567778888899888888889998888877765 2222345667999999999999999999987665 8999
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 045672 142 SWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD 186 (643)
Q Consensus 142 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 186 (643)
++|.||..+.+.|++..|.++..+|...+...+..|+...+.+|.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 999999999999999999999999988877777777776665553
No 184
>PRK15331 chaperone protein SicA; Provisional
Probab=97.13 E-value=0.0055 Score=52.84 Aligned_cols=90 Identities=12% Similarity=0.069 Sum_probs=77.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCCh
Q 045672 413 CMIDLLGRAGKLQEAVKLIHEMP-YE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490 (643)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 490 (643)
...--+...|++++|..+|.-+- .. -+..-|..|...|...++++.|+..|..+..++++||..+...+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 33444567899999999998761 12 35556888888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 045672 491 DEVAEVRKTMRA 502 (643)
Q Consensus 491 ~~a~~~~~~m~~ 502 (643)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 185
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.12 E-value=0.00032 Score=43.30 Aligned_cols=34 Identities=29% Similarity=0.568 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHccCChhHHHH
Q 045672 462 AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAE 495 (643)
Q Consensus 462 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 495 (643)
+++++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3688999999999999999999999999999863
No 186
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.09 E-value=0.014 Score=57.05 Aligned_cols=125 Identities=15% Similarity=0.190 Sum_probs=74.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHH
Q 045672 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA-CTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYC 317 (643)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~ 317 (643)
+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..||+...+ ++.+...+...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45566666666666666777776666432 2223333333333 2234556667777777776 6667777777777777
Q ss_pred hcCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045672 318 KCGSLEDAMSVFSRMIQK------DVISWSTMISGLAQNGYSQEALKLFESMKV 365 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 365 (643)
+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+..+.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777776432 223677777766677777777777776665
No 187
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.09 E-value=0.39 Score=48.22 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=58.7
Q ss_pred HHHHhCCCCC----CHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 429 KLIHEMPYEP----DAVTWRALLGA--CKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 429 ~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
.++++.++.| +...-|.|.+| ...+|++.++.-...-+.+..| ++.+|..++-......++++|..++..+.
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3455555544 44466777777 5789999999999999999999 78999999999999999999999998653
No 188
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.01 E-value=0.74 Score=50.20 Aligned_cols=190 Identities=13% Similarity=0.110 Sum_probs=115.0
Q ss_pred HHHHHHHH--HhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 045672 42 LLDDFTRF--CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMH 119 (643)
Q Consensus 42 ~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 119 (643)
|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|...+..++|..++++..... |+......+..+|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmay 120 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHH
Confidence 45555554 5799999999999888765533 88899999999999999999999999998864 5677778888899
Q ss_pred HcCCChh----HHHHHHccCCCCCcchHHHHHHHHHhC-CCh---------hHHHHHHHHHHHCCCCCC----hhhHHHH
Q 045672 120 VKFSLLE----EAQVLFDQMPERNVVSWTTMISAYCDA-KMN---------DKALELLIFMLREGVRPN----MFTYSAV 181 (643)
Q Consensus 120 ~~~g~~~----~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~---------~~A~~~~~~m~~~g~~p~----~~t~~~l 181 (643)
++.+.+. .|.+++...++.--.-|+ +++.+.+. ..+ .-|.+.++.+.+.+-+.. ...|-.+
T Consensus 121 vR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 9887765 466777766654333444 44444433 122 234445555554431111 1223233
Q ss_pred HHHHhchhhHHHHH-HHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC
Q 045672 182 LRACDSLIILRQLH-CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235 (643)
Q Consensus 182 l~a~~~~~~~~~~~-~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 235 (643)
+....+......+. ......-..-+...-+--++.+...+++.+..++-.++..
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 33222211111221 1222222333444555667777788887776665555443
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.01 E-value=0.1 Score=45.60 Aligned_cols=131 Identities=11% Similarity=0.072 Sum_probs=95.2
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-C-----CCCCHH
Q 045672 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-P-----YEPDAV 441 (643)
Q Consensus 368 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-----~~p~~~ 441 (643)
..|....-..|..+....|+..+|...|++.... -+..|....-.+..+....+++.+|...++.+ . -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 3566666667777788888888888888877762 33446667777777777788888888777766 1 22443
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
-..+...+...|.++.|+..|+.++.--|. +..-...+..+.++|+.+++..-+..+.+
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 334556788899999999999999988774 45666778888999999888876665554
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.99 E-value=0.0059 Score=59.61 Aligned_cols=129 Identities=11% Similarity=0.019 Sum_probs=91.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHH---hHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCC-CCHH
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKS---MKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-------PYE-PDAV 441 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~-p~~~ 441 (643)
.|..|.+.|.-.|++++|+..++. +.+.+|-.. ....+..+..++.-.|.++.|.+.|+.. +-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455556666667889998877654 223345433 2346777888888899999999888754 211 2344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLD------PQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+.-+|.+.|....+++.|+.++.+-+.+- -....++.+|+++|...|.-+.|..+.++-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56678888888888999998887765432 22456889999999999999999887766553
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.99 E-value=0.021 Score=47.24 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=53.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCChhHhHHHHHHHHhh-cCC---chhHHhHHHHHHH
Q 045672 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQ--STLTSVLRACTGLALLELGTQVHVHVLK-YDH---DLILNNALLDMYC 317 (643)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~---~~~~~~~Li~~y~ 317 (643)
+..++-..|+.++|+.+|++....|..... ..+..+.+++...|++++|..+++.... .+. +..+...+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677789999999999998888766542 3444555566666666666666666655 322 2222223334445
Q ss_pred hcCCHHHHHHHHhhc
Q 045672 318 KCGSLEDAMSVFSRM 332 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m 332 (643)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 556666665555443
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.96 E-value=0.0013 Score=48.60 Aligned_cols=59 Identities=14% Similarity=0.207 Sum_probs=30.4
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 045672 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWR 444 (643)
Q Consensus 384 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 444 (643)
..|++++|.++|+.+... .+-+...+..++.+|.+.|++++|.++++++ ...|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 345566666666665542 2224445555556666666666666666555 2334433333
No 193
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.93 E-value=0.015 Score=52.39 Aligned_cols=107 Identities=21% Similarity=0.192 Sum_probs=80.5
Q ss_pred CCCHhhHHHHHHHHH-----ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHH
Q 045672 71 RADSVTYAELIKCCL-----ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTT 145 (643)
Q Consensus 71 ~p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~ 145 (643)
..|..+|..+++.+. +.|.++-....+..|.+.|++.|..+|+.|++++=+ |.+- -..+|+.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~----------- 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQA----------- 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHH-----------
Confidence 457788888888876 457888888999999999999999999999998865 3322 1111111
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH
Q 045672 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192 (643)
Q Consensus 146 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 192 (643)
+.--| -.+-+-|++++++|...|+.||..|+..++..+++.+..-
T Consensus 111 ~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 111 EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 11111 2345679999999999999999999999999988776654
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.08 Score=48.91 Aligned_cols=167 Identities=12% Similarity=0.080 Sum_probs=114.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCC--C--------cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 045672 210 RSALIDIYAKLGELRNAECVFNEMPTR--D--------LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279 (643)
Q Consensus 210 ~~~li~~y~~~g~~~~A~~~f~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 279 (643)
+++|...|.-..-+++-...|+.-..+ . ....+.++..+...|.+.-.+.++++.++...+.++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 344555554444444444444433221 1 234456777777788888899999999887666678888888
Q ss_pred HHHHhcCChhHhHHHHHHHHhh--cCCc-----hhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHh
Q 045672 280 LRACTGLALLELGTQVHVHVLK--YDHD-----LILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQ 349 (643)
Q Consensus 280 l~a~~~~~~~~~a~~i~~~~~~--~~~~-----~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~ 349 (643)
.+...+.|+.+.+...++.+.+ ...+ ..+.......|.-.+++..|...|.+++. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888899999999999998877 2222 23333444556778889999999988754 356666766666777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045672 350 NGYSQEALKLFESMKVSRIKPNYITIVGV 378 (643)
Q Consensus 350 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 378 (643)
.|+..+|++..+.|... .|...+-+++
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 89999999999999884 4555444433
No 195
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.89 E-value=0.041 Score=58.45 Aligned_cols=141 Identities=15% Similarity=0.104 Sum_probs=102.6
Q ss_pred CCCChhhHHHHHHHHHh--cC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc--------CCHHHHHHHHHHh
Q 045672 333 IQKDVISWSTMISGLAQ--NG---YSQEALKLFESMKVSRIKPN-YITIVGVLFACSHA--------GFVEDGWNHFKSM 398 (643)
Q Consensus 333 ~~~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~--------g~~~~a~~~~~~~ 398 (643)
...|...|...+.+... .+ ..++|.++|++..+. .|+ ...+..+..++... .++..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34578899999988554 32 377999999999984 677 45555554444222 1223344444433
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 045672 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475 (643)
Q Consensus 399 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 475 (643)
........+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 321123345577888877777889999999999988 66788888999999999999999999999999999999873
No 196
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.89 E-value=0.72 Score=48.14 Aligned_cols=405 Identities=13% Similarity=0.054 Sum_probs=232.6
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhh-HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 045672 38 NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVT-YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116 (643)
Q Consensus 38 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 116 (643)
+...|+++|..--+..+.+.+...+..++.. .|...- |.....-=.+.|..+.+..+|+..+.. ++.....|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 4556888887666666666677777777754 454443 333333345788999999999999875 566677777666
Q ss_pred HHHH-cCCChhHHHHHHccCCC------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhch-
Q 045672 117 NMHV-KFSLLEEAQVLFDQMPE------RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL- 188 (643)
Q Consensus 117 ~~~~-~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~- 188 (643)
.... ..|+.+...+.|+.... ....-|...|.--..++++.....+|++.++.. ...|+.....+.+.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHH
Confidence 6554 45777788888887654 345578889988888999999999999998642 22233332222110
Q ss_pred --hhHHHHHHHHHHhCCCCchhHHHHHHHHHHH------cC-CHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHH
Q 045672 189 --IILRQLHCGIIKVGFESDVFVRSALIDIYAK------LG-ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN 259 (643)
Q Consensus 189 --~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~------~g-~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 259 (643)
.... + ..+......+-..-.. .+ ..+.-....+....+ .+..+++..
T Consensus 197 ~~~~~~-~---------l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~--------------s~~l~~~~~ 252 (577)
T KOG1258|consen 197 NQNEEK-I---------LLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDP--------------SKSLTEEKT 252 (577)
T ss_pred hcCChh-h---------hcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCc--------------cchhhHHHH
Confidence 0000 0 0000000000000000 00 011111111111111 112222222
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh---------cCCchhHHhHHHHHHHhcCCHHHHHHHHh
Q 045672 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---------YDHDLILNNALLDMYCKCGSLEDAMSVFS 330 (643)
Q Consensus 260 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~---------~~~~~~~~~~Li~~y~~~g~~~~A~~~~~ 330 (643)
...+....+ ..+|..-... ...+..++..++ ...+..+|...++.-.+.|+.+...-.|+
T Consensus 253 ~l~~~~~~~----~~~~~~s~~~-------~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~e 321 (577)
T KOG1258|consen 253 ILKRIVSIH----EKVYQKSEEE-------EEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFE 321 (577)
T ss_pred HHHHHHHHH----HHHHHhhHhH-------HHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHH
Confidence 222211110 1111111111 111112222222 23345677888888889999999999998
Q ss_pred hcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 045672 331 RMIQK---DVISWSTMISGLAQNGYSQEALKLFESMKVSRI--KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405 (643)
Q Consensus 331 ~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 405 (643)
+..-+ -..-|--.+.-.-..|+.+-|-.++....+--+ .|....+.+.+ +-..|+++.|..+++.+..+ .
T Consensus 322 rcli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~- 396 (577)
T KOG1258|consen 322 RCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y- 396 (577)
T ss_pred HHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-
Confidence 88654 223455555555555888888877776654332 23333333333 45678999999999999985 3
Q ss_pred CCh-HHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH----HH-HHHcCCHHHHHHHHHHHHhcCCCCcc
Q 045672 406 PGR-EHYSCMIDLLGRAGKLQEAV---KLIHEM-PYEPDAVTWRALL----GA-CKVHRNTDLAICAAKKILNLDPQDPG 475 (643)
Q Consensus 406 p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll----~~-~~~~g~~~~a~~~~~~~~~~~p~~~~ 475 (643)
|+. ..-..-+....|.|..+.+. +++... +.+-+..+...+. .. +...++.+.|..++.++.+..|++-.
T Consensus 397 pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~ 476 (577)
T KOG1258|consen 397 PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKV 476 (577)
T ss_pred CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHH
Confidence 543 33444566777889988888 554443 2222332222222 11 45578999999999999999999999
Q ss_pred hHHHHHHHHHccCC
Q 045672 476 TYILLSNIYANSQK 489 (643)
Q Consensus 476 ~~~~l~~~~~~~g~ 489 (643)
.|..+++.....+.
T Consensus 477 ~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 477 LYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHhCCc
Confidence 99999998877663
No 197
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.89 E-value=0.016 Score=46.26 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhHHhcCCCCChHHH
Q 045672 341 STMISGLAQNGYSQEALKLFESMKVSRI-KPNYITIVGVLFACSHAG--------FVEDGWNHFKSMKKFYGIDPGREHY 411 (643)
Q Consensus 341 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 411 (643)
...|..+...|++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-+.+.+++.|... +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3456666667999999999999999999 899999999998876543 244567788888874 888888888
Q ss_pred HHHHHHHHh
Q 045672 412 SCMIDLLGR 420 (643)
Q Consensus 412 ~~li~~~~~ 420 (643)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
No 198
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.88 E-value=0.011 Score=53.17 Aligned_cols=97 Identities=15% Similarity=0.239 Sum_probs=78.0
Q ss_pred HHHHhhc--CCCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 045672 326 MSVFSRM--IQKDVISWSTMISGLAQ-----NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA------------- 385 (643)
Q Consensus 326 ~~~~~~m--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 385 (643)
...|+.. ..+|..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4456655 56788888888888875 477888888889999999999999999999887543
Q ss_pred ---CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 045672 386 ---GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423 (643)
Q Consensus 386 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 423 (643)
.+-+-|++++++|.. +|+-||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234568899999988 6999999999999999887765
No 199
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.86 E-value=0.023 Score=57.85 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=94.4
Q ss_pred cCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh----cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC----CCChh
Q 045672 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK----YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI----QKDVI 338 (643)
Q Consensus 267 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~----~~~~~ 338 (643)
.+.+.+...+..+++.+....+++.++.++-.... ...-..+..++|..|.+.|..+.+..+++.=. =+|..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 34566778888888888888888888888777665 22233455689999999999999999887653 36888
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 385 (643)
++|.+|+.+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999988888777888887777777655
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.83 E-value=0.0094 Score=57.15 Aligned_cols=94 Identities=13% Similarity=0.114 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---cchHHHHH
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDA----VTWRALLGACKVHRNTDLAICAAKKILNLDPQD---PGTYILLS 481 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 481 (643)
.|..-+..+.+.|++++|...|+.+ ...|+. ..+--+...+...|+++.|...|+++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 4555555556667777777777666 222332 344556666777888888888888888776664 44555667
Q ss_pred HHHHccCChhHHHHHHHHHHhC
Q 045672 482 NIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 482 ~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
.+|...|++++|.++++.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7787888888888888877653
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.76 E-value=0.04 Score=45.56 Aligned_cols=91 Identities=12% Similarity=0.124 Sum_probs=66.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHH
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRIKPN--YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLG 419 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 419 (643)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567778999999999999998886655 44667788888999999999999998887532111 2223333445677
Q ss_pred hcCCHHHHHHHHHh
Q 045672 420 RAGKLQEAVKLIHE 433 (643)
Q Consensus 420 ~~g~~~~A~~~~~~ 433 (643)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999998877644
No 202
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.74 E-value=0.0043 Score=45.83 Aligned_cols=65 Identities=23% Similarity=0.278 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 045672 407 GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHR-NTDLAICAAKKILNLDP 471 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 471 (643)
+...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777778888888888888888776 3445 4457777777888888 68999999999988887
No 203
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.69 E-value=0.062 Score=46.25 Aligned_cols=93 Identities=9% Similarity=-0.009 Sum_probs=68.3
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 045672 310 NALLDMYCKCGSLEDAMSVFSRMI--QK-DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386 (643)
Q Consensus 310 ~~Li~~y~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 386 (643)
-++..-+...|++++|.++|+-+. +| +..-|-.|..++-..|++++|+..|....... +-|+..+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 345555667888888888888763 23 55567778888888888888888888887754 234666777777888888
Q ss_pred CHHHHHHHHHHhHHhcC
Q 045672 387 FVEDGWNHFKSMKKFYG 403 (643)
Q Consensus 387 ~~~~a~~~~~~~~~~~~ 403 (643)
+.+.|++.|+......+
T Consensus 118 ~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 118 NVCYAIKALKAVVRICG 134 (157)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 88888888888776433
No 204
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.64 E-value=0.0087 Score=60.31 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDA----VTWRALLGACKVHRNTDLAICAAKKILNL 469 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 469 (643)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444555555555566666666555553 444442 23555555555566666666666665554
No 205
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.60 E-value=0.35 Score=45.98 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=32.3
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCCCc---ch---HHHHHHHHHhCCChhHHHHHHHHHHHc
Q 045672 214 IDIYAKLGELRNAECVFNEMPTRDL---VV---WNSIIGGFAQNSDVDEALNLYKRMKRA 267 (643)
Q Consensus 214 i~~y~~~g~~~~A~~~f~~~~~~~~---~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 267 (643)
...+.+.|++++|.+.|+++....+ .. .-.++.+|.+.+++++|...|++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3344556777777777777654211 11 123455666777777777777777664
No 206
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.59 E-value=0.0045 Score=40.89 Aligned_cols=41 Identities=32% Similarity=0.474 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 482 (643)
+|..+..++...|++++|++.++++++.+|+|+..+..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 57788889999999999999999999999999988877764
No 207
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=1.4 Score=47.19 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=63.2
Q ss_pred hCCCCCCHhhHHH-----HHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC---ChhHHHHHHccCCC-
Q 045672 67 CHGVRADSVTYAE-----LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS---LLEEAQVLFDQMPE- 137 (643)
Q Consensus 67 ~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~f~~m~~- 137 (643)
+.|++.+..-|.. ++.-+...+.+..|.++-..+-..-... ..++.....-+.+.. +-+-+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4566666555544 4555667788888998887773211111 456666666666653 23333444444444
Q ss_pred -CCcchHHHHHHHHHhCCChhHHHHHHHH
Q 045672 138 -RNVVSWTTMISAYCDAKMNDKALELLIF 165 (643)
Q Consensus 138 -~~~~~~~~li~~~~~~g~~~~A~~~~~~ 165 (643)
...++|..+.+-....|+++-|..+++.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 4667899999888899999999888765
No 208
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.37 E-value=1.3 Score=44.51 Aligned_cols=134 Identities=11% Similarity=0.071 Sum_probs=92.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 045672 337 VISWSTMISGLAQNGYSQEALKLFESMKVSR-IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415 (643)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 415 (643)
...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+.=... ++.+..--.-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456667777666666778888888888877 5667777777776554 56777888888765553 222233334566
Q ss_pred HHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 416 DLLGRAGKLQEAVKLIHEM--PYEPD--AVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
.-+.+.++-+.|..+|+.. .+..+ ...|..+|.--...|+...+..+-+++.+.-|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6777888888888888754 12223 4578888887788888888888888888877764
No 209
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.37 E-value=1.8 Score=45.99 Aligned_cols=200 Identities=13% Similarity=0.121 Sum_probs=101.8
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc-CCC--------CchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcc
Q 045672 71 RADSVTYAELIKCCLARHAVEEAKLVHNHVLSG-GFE--------PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVV 141 (643)
Q Consensus 71 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~--------~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~ 141 (643)
.|.+..|..+.......-.++.|++.|-+.... |+. .+...-.+=+. +-.|++++|++++-+|..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 678888888888777777788888777544321 111 01111112222 234889999999988877764
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 045672 142 SWTTMISAYCDAKMNDKALELLIFMLREGVRPNM----FTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIY 217 (643)
Q Consensus 142 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y 217 (643)
-|..+.+.|++-.+.++++. -|-..|. ..+..+-.-++....++...+.-...|.. ..++..|
T Consensus 766 ----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------e~~~ecl 832 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------ENQIECL 832 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------HhHHHHH
Confidence 35556666776665555432 1111111 12222222222222222111111111110 1134444
Q ss_pred HHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHH
Q 045672 218 AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296 (643)
Q Consensus 218 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 296 (643)
.+..++++-+.+-..+++ |....-.|...+...|.-++|.+.|-+- + .| ...+.+|..++++.+|.++-
T Consensus 833 y~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 833 YRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred HHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHH
Confidence 444555555555444444 3445556777778888888887766332 1 12 23345566666666665543
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.21 Score=46.29 Aligned_cols=134 Identities=12% Similarity=-0.000 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----CCCChHHHHHH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG----IDPGREHYSCM 414 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l 414 (643)
.-+.++..+.-+|.+.-.+.++.+.++...+-++.....+.+.-.+.|+.+.|..+|+...+..+ +.-...+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34556666667788888888888888865555677777788888888999999888887765422 12222222333
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 415 IDLLGRAGKLQEAVKLIHEMPYE--PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
...|.-++++.+|...+++.+.. .|...-|.-.-...-.|+...|++..+.+++..|.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 33455566677777777666322 23333333222233456677777777777777665
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.28 E-value=0.75 Score=46.07 Aligned_cols=159 Identities=19% Similarity=0.139 Sum_probs=83.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC---Ch----hhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045672 311 ALLDMYCKCGSLEDAMSVFSRMIQK---DV----ISWSTMISGLAQ---NGYSQEALKLFESMKVSRIKPNYITIVGVLF 380 (643)
Q Consensus 311 ~Li~~y~~~g~~~~A~~~~~~m~~~---~~----~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 380 (643)
.|+-.|-...+++.-.++.+.+... ++ ..-....-++-+ .|+.++|++++..+....-.+++.|+..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777777777777777543 11 111223344555 6888888888888666555677777766665
Q ss_pred HHhc---------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH----HHHH---Hh-C---C---CC
Q 045672 381 ACSH---------AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA----VKLI---HE-M---P---YE 437 (643)
Q Consensus 381 a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~~-m---~---~~ 437 (643)
.|-. ....++|...|.+. +.+.|+..+--.++..+...|.-.+. .++- .. . + -.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5421 12355565555543 33455544333333334444432211 1111 00 0 0 11
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 438 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
.|--.+.+++.++.-.|+++.|.+.++++..+.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 23334455666666666666666666666666553
No 212
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=2.3 Score=46.27 Aligned_cols=175 Identities=14% Similarity=0.118 Sum_probs=98.0
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHH----HHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 045672 43 LDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKC----CLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118 (643)
Q Consensus 43 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 118 (643)
..-|.-+.+..-+.-|+.+-+. .+ .|..+...+... +.+.|++++|.+.+-+.+.. ++| ..++.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 3456677778888888877543 22 233344444443 44678888888777555433 222 223444
Q ss_pred HHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHH
Q 045672 119 HVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLH 195 (643)
Q Consensus 119 ~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 195 (643)
|....++.+-...++.+.+ .+...-+.|+.+|.+.++.++-.++.+.-. .|.. .+-+-..+..|.+.+-+++..
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 4444455555555555544 244456678888888888877666655443 2322 112334445554444444333
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCC
Q 045672 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236 (643)
Q Consensus 196 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 236 (643)
-...+.+. ...+... .+-..+++++|.+.+..++-+
T Consensus 484 ~LA~k~~~--he~vl~i---lle~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 484 LLATKFKK--HEWVLDI---LLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHHHhcc--CHHHHHH---HHHHhcCHHHHHHHHhcCCHH
Confidence 33333333 2222222 344568899999999999854
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.25 E-value=0.019 Score=42.89 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=50.0
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHH
Q 045672 416 DLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478 (643)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 478 (643)
..|.+.+++++|.+.++.+ ...| +...|......+...|++++|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5678889999999988887 4445 4456777777889999999999999999999998765443
No 214
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.22 E-value=0.97 Score=47.81 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=29.9
Q ss_pred cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045672 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363 (643)
Q Consensus 302 ~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 363 (643)
++.+....-.+.+|+.+.|.-++|.+.|-+-..|- +.+..|...+++.+|.++-++.
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 44445555556666666666666665555443332 2234445555555555555443
No 215
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.15 E-value=0.44 Score=39.30 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=82.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 427 (643)
.-.|..++..++..+...+ .+..-++.++.-....-+-+-..+.++.+-+-|.+.| +|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~--------------C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK--------------CGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG---------------S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh--------------hcchHHH
Confidence 4467777778888777653 2444555555444444444555556666554333222 3333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 045672 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506 (643)
Q Consensus 428 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 506 (643)
..-+-.++ .+.......++.....|.-+.-.+++..+..-+..+|....-++++|.+.|+..++.+++.+.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33333332 233344556677888899998889999888655557889999999999999999999999999999975
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.14 E-value=0.0093 Score=45.32 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC---CcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNL----DPQ---DPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+++.+...+...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5666667777788888888888777753 222 245778888999999999999998887653
No 217
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.08 E-value=0.13 Score=49.29 Aligned_cols=100 Identities=14% Similarity=0.078 Sum_probs=59.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 045672 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM----PYEP-DAVTWRALLG 448 (643)
Q Consensus 375 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~ 448 (643)
|...+....+.|++++|...|+.+.+.+.-.+ ....+..+...|...|++++|...|+.+ |..| ....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333445666666666666665421111 0234555666677777777777766665 2111 1234444555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 449 ACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
.+...|+.+.|...++++++..|++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 66778888888888888888888764
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.02 E-value=0.037 Score=54.29 Aligned_cols=52 Identities=23% Similarity=0.288 Sum_probs=42.7
Q ss_pred HHHHhCCCcchHHHHHHHHHhCCCCCCH----hhHHHHHHHHHccCCHHHHHHHHHH
Q 045672 47 TRFCYQRDLPRAMKAMHAMQCHGVRADS----VTYAELIKCCLARHAVEEAKLVHNH 99 (643)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~ 99 (643)
..+++.|+++..+.+|+..++.|. .|. .+|..|.++|.-.+++++|.+.|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 367999999999999999999883 343 4577778888889999999998754
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.94 E-value=0.58 Score=43.23 Aligned_cols=161 Identities=15% Similarity=0.142 Sum_probs=85.2
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhc-
Q 045672 314 DMYCKCGSLEDAMSVFSRMIQK------DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN--YITIVGVLFACSH- 384 (643)
Q Consensus 314 ~~y~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~- 384 (643)
..+...|++++|.+.|+.+... -....-.++.++-+.|++++|...++++++. -|+ ..-+...+.+.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHH
Confidence 3345667777777777776431 1123445566677777777777777776653 232 1222222222211
Q ss_pred ------------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH--HHHHHH
Q 045672 385 ------------AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR--ALLGAC 450 (643)
Q Consensus 385 ------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~--~ll~~~ 450 (643)
.+...+|...|+.+.+ -|=.+....+|...+..+. +...-. .+..-|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELR---NRLAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 1112233333333333 3333334444444433331 111111 133457
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHccCChhHHHH
Q 045672 451 KVHRNTDLAICAAKKILNLDPQDP---GTYILLSNIYANSQKWDEVAE 495 (643)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 495 (643)
.+.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..+.+..
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 889999999999999999888754 356788899999998885443
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.069 Score=52.77 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 441 VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 441 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
..++.+...+.+.+++..|++...++++++|+|.-++..-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 356667777889999999999999999999999999999999999999999999999999863
No 221
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.42 Score=45.58 Aligned_cols=104 Identities=15% Similarity=0.074 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCCCHH-HH
Q 045672 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG---KLQEAVKLIHEM-PYEPDAV-TW 443 (643)
Q Consensus 369 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p~~~-~~ 443 (643)
+-|...|..|..+|...|+.+.|..-|....+- -.++...+..+...+..+. ...++.++|+++ ...|+.. +.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 345677888888888888888888888877763 3345556666666655433 355677888877 4455444 45
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 444 RALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 444 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
.-|...+...|++.+|...++.|++..|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 5555668899999999999999999887764
No 222
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.85 E-value=0.1 Score=43.68 Aligned_cols=50 Identities=10% Similarity=0.220 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 045672 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417 (643)
Q Consensus 368 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 417 (643)
..|+..++.+++.+++..|++..|.++.+...+.|+++-+...|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 56777777777777777777777777777777777766666666666543
No 223
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.80 E-value=0.042 Score=47.73 Aligned_cols=68 Identities=26% Similarity=0.304 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh-----CCCCcCC
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA-----RGITKEP 509 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~ 509 (643)
....++..+...|+++.|...+++++..+|-+...|..++.+|...|+..+|.++++++.+ .|+.|.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 4556677788999999999999999999999999999999999999999999999988853 3665543
No 224
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.79 E-value=2.5 Score=42.68 Aligned_cols=385 Identities=14% Similarity=0.103 Sum_probs=179.2
Q ss_pred HHHHHHHH--HhCCCcchHHHHHHHHHhC--CCCC------------CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 045672 42 LLDDFTRF--CYQRDLPRAMKAMHAMQCH--GVRA------------DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105 (643)
Q Consensus 42 ~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 105 (643)
|-.+..++ .+.+.+..|++.|...... +..| |-..=+..+.++...|.+.+|+.+++.++..=+
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 44444433 3678899999888777653 3222 112224456777889999999999888876544
Q ss_pred ----CCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 045672 106 ----EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181 (643)
Q Consensus 106 ----~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 181 (643)
..+..+|+.++-++++.=-++ +-+.+...=...|--||..|.+.=+. ++.-.-..+.|....+..+
T Consensus 160 krE~~w~~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~~------~d~~~Y~k~~peeeL~s~i 229 (549)
T PF07079_consen 160 KRECEWNSDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIHA------FDQRPYEKFIPEEELFSTI 229 (549)
T ss_pred hhhhcccHHHHHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHHHHH------HhhchHHhhCcHHHHHHHH
Confidence 378889998888877642111 11122221122355556555542111 1110001123333333333
Q ss_pred HHHHhchhhHH-----HHHHHHHHhCCCCchh-HHHHHHHHHHHcCCHHHHHHHHhhCC--------CCCcchHHHHHHH
Q 045672 182 LRACDSLIILR-----QLHCGIIKVGFESDVF-VRSALIDIYAKLGELRNAECVFNEMP--------TRDLVVWNSIIGG 247 (643)
Q Consensus 182 l~a~~~~~~~~-----~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~~ 247 (643)
+....-...-. ++...-...-+.|+-. +...|+.-+.+ +.+++..+-+.+. +.=+.++..++..
T Consensus 230 mqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~ 307 (549)
T PF07079_consen 230 MQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSF 307 (549)
T ss_pred HHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 32221111111 3333333344445432 23334444433 3344333333222 2234578888888
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHh-cCCh---hHhHHHHHHHHhhcCCch-hHHhHHH--
Q 045672 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTS-------VLRACT-GLAL---LELGTQVHVHVLKYDHDL-ILNNALL-- 313 (643)
Q Consensus 248 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-------ll~a~~-~~~~---~~~a~~i~~~~~~~~~~~-~~~~~Li-- 313 (643)
.++.++..+|.+.+.-+.- +.|+...-.- +-+..+ .... +..-..++..+...+.|. ....-|+
T Consensus 308 ~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~ 385 (549)
T PF07079_consen 308 KVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFG 385 (549)
T ss_pred HHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 8899999888888776654 3343321111 111111 1111 111112222222211111 1111121
Q ss_pred -HHHHhcCC-HHHHHHHHhhcC---CCChhhHHHHHH----HHHh---cCCHHHHHHHHHHHHHCCCCCCHHH----HHH
Q 045672 314 -DMYCKCGS-LEDAMSVFSRMI---QKDVISWSTMIS----GLAQ---NGYSQEALKLFESMKVSRIKPNYIT----IVG 377 (643)
Q Consensus 314 -~~y~~~g~-~~~A~~~~~~m~---~~~~~~~~~li~----~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ 377 (643)
.-+-+.|. -++|.++++.+. ..|...-|.+.. .|.+ ......-+.+-+-..+.|++|-.+. -+.
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 22333444 556666666553 234433333221 2221 1122233333333445565553222 222
Q ss_pred HHH--HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 045672 378 VLF--ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445 (643)
Q Consensus 378 ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 445 (643)
|.. .+...|++.++.-+-.-+. .+.|++.+|..+.-.+....++++|.+++..+| |+..+|++
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 222 2234566666654443333 356677777766666666677777777777764 45555544
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.72 E-value=0.019 Score=43.58 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM-------P-YEPD-AVTWRALLGACKVHRNTDLAICAAKKILNL 469 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 469 (643)
+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|+..+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555556666666666666555544 1 1122 335666667777777777777777776653
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.61 E-value=2.9 Score=42.13 Aligned_cols=128 Identities=13% Similarity=0.057 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHH
Q 045672 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYG-IDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTW-RALLGA 449 (643)
Q Consensus 373 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~ll~~ 449 (643)
..|...+++..+..-++.|+.+|-++.+. + +.+++..+++++.-++ .|+..-|..+|+-- ..-||...| +-.+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34556677777778889999999999885 5 6788889999998765 67888899988754 333555543 455666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 450 CKVHRNTDLAICAAKKILNLDPQ--DPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+...++-+.|..+|+..++.-.. -...|..++.--+.-|+...|..+=+.|.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 77888999999999976653221 235788888888888888887777766654
No 227
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=1.5 Score=40.45 Aligned_cols=87 Identities=15% Similarity=0.086 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCcchH
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEMP-------YEPDA-VTWRALLGACKVHRNTDLAICAAKKILNL----DPQDPGTY 477 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~ 477 (643)
.|......|.|..++++|-..|.+-. --|+. ..+-+.|-.+.-..++..|++.++.--++ +|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34444556777777777766655441 11222 12334444455566888888888876553 36677777
Q ss_pred HHHHHHHHccCChhHHHHHH
Q 045672 478 ILLSNIYANSQKWDEVAEVR 497 (643)
Q Consensus 478 ~~l~~~~~~~g~~~~a~~~~ 497 (643)
..|+.+| ..|+.+++..+.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 7777777 457777766654
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.37 E-value=0.17 Score=41.43 Aligned_cols=90 Identities=18% Similarity=0.158 Sum_probs=71.9
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC---cchHHHHHHHHHccCC
Q 045672 416 DLLGRAGKLQEAVKLIHEM-PYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLD-PQD---PGTYILLSNIYANSQK 489 (643)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~ 489 (643)
-+++..|+++.|++.|.+. ..- .....||.-..+++-.|+.++|+.-+++++++. |.. -.+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567889999999998876 222 356788999999999999999999999999875 332 2367778889999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 045672 490 WDEVAEVRKTMRARGI 505 (643)
Q Consensus 490 ~~~a~~~~~~m~~~g~ 505 (643)
-+.|+.=|+...+-|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999998887663
No 229
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.28 E-value=0.62 Score=48.74 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=33.6
Q ss_pred HHHHHHHHHccCCHHHHHHH--HHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC
Q 045672 77 YAELIKCCLARHAVEEAKLV--HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE 137 (643)
Q Consensus 77 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 137 (643)
++..=++|.+.++..--+-+ ++++.+.|-.|+... +...++-.|.+.+|.++|.+--.
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~ 660 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGH 660 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCc
Confidence 44455566665554443333 345666666566543 34455566778888888876654
No 230
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=3.6 Score=41.11 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=30.7
Q ss_pred HHHHcCCHHHHHHHHhhCCCCCcc-hHHHHHHH--HHhCCChhHHHHHHHHHHHcCCCCCHH
Q 045672 216 IYAKLGELRNAECVFNEMPTRDLV-VWNSIIGG--FAQNSDVDEALNLYKRMKRAGFAADQS 274 (643)
Q Consensus 216 ~y~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~ 274 (643)
.+.-.|++++|...--.+.+-|.. .+...+.+ +--+++.+.|...|++-+.. .|+..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~ 237 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQ 237 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--Chhhh
Confidence 345567777776665554443322 22223332 33456777888877776653 45443
No 231
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.27 E-value=0.43 Score=44.09 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=33.0
Q ss_pred HHHHHHcCCHHHHHHHHhhCCC--CC----cchHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 045672 214 IDIYAKLGELRNAECVFNEMPT--RD----LVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267 (643)
Q Consensus 214 i~~y~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 267 (643)
...+...|++++|.+.|+.+.. |+ ..+.-.++.++-+.|++++|...|++..+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445567777777777777653 21 123445666777777777777777777664
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.23 E-value=1.8 Score=43.45 Aligned_cols=97 Identities=12% Similarity=0.090 Sum_probs=62.2
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCC---Cc----chHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045672 212 ALIDIYAKLGELRNAECVFNEMPTR---DL----VVWNSIIGGFAQ---NSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281 (643)
Q Consensus 212 ~li~~y~~~g~~~~A~~~f~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 281 (643)
.|+-.|-...+++.-.++++.+... ++ ..--...-++-+ .|+.++|++++..+....-.+++.|+..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4556688889999999999988763 11 111233445556 7899999999999776666788888877666
Q ss_pred HHh---------cCChhHhHHHHHHHHhhcCCchhH
Q 045672 282 ACT---------GLALLELGTQVHVHVLKYDHDLIL 308 (643)
Q Consensus 282 a~~---------~~~~~~~a~~i~~~~~~~~~~~~~ 308 (643)
.|- ....++.|...+.+.-+..++...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~ 261 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS 261 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc
Confidence 542 122344555555544444444433
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.35 Score=47.98 Aligned_cols=138 Identities=15% Similarity=0.045 Sum_probs=96.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 045672 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423 (643)
Q Consensus 344 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 423 (643)
.+.|.+.|++..|...|++.+.. |. +...-+.++..... . .-..++..+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~-~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE-A--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH-H--------HHHHHhhHHHHHHHhhhh
Confidence 45677778888888877776541 11 11111112221111 1 123467778888999999
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHH-HHHHHHH
Q 045672 424 LQEAVKLIHEM-PYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV-AEVRKTM 500 (643)
Q Consensus 424 ~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 500 (643)
+.+|++.-++. ... +|+-..---..+|...|+++.|+..|+++++++|+|-.+-..|+.+-.+....++. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888776 333 45556666678899999999999999999999999988888888877776666554 8889988
Q ss_pred HhC
Q 045672 501 RAR 503 (643)
Q Consensus 501 ~~~ 503 (643)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 754
No 234
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.21 E-value=2.6 Score=39.05 Aligned_cols=196 Identities=19% Similarity=0.168 Sum_probs=130.7
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMI-----QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 380 (643)
..........+...+.+..+...+.... ......+......+...++..++.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455666667777777777777766653 22344566666677777778888888888776433331 11222222
Q ss_pred -HHhccCCHHHHHHHHHHhHHhcCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcC
Q 045672 381 -ACSHAGFVEDGWNHFKSMKKFYGI--DPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD--AVTWRALLGACKVHR 454 (643)
Q Consensus 381 -a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g 454 (643)
.+...|+++.+...+..... ... ......+......+...++.++|...+.+. ...++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 67788888888888888744 111 122334444444566778888888888776 33333 566777777788888
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 455 NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 455 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+.+.|...+.......|.....+..+...+...|.++++...+......
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8889999999888888875556677777777777788888888777653
No 235
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.19 E-value=0.23 Score=41.49 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHh--------------HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 045672 372 YITIVGVLFACSHAGFVEDGWNHFKSM--------------KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM--- 434 (643)
Q Consensus 372 ~~t~~~ll~a~~~~g~~~~a~~~~~~~--------------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 434 (643)
+.++..++.++++.|+++....+.+.. .......|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 445555666666666666555555432 111133355555555555555555555555555443
Q ss_pred -CCCCCHHHHHHHHHH
Q 045672 435 -PYEPDAVTWRALLGA 449 (643)
Q Consensus 435 -~~~p~~~~~~~ll~~ 449 (643)
+++-+..+|..|+.-
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 333334455555543
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=1 Score=42.99 Aligned_cols=121 Identities=13% Similarity=0.078 Sum_probs=85.8
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCCHH
Q 045672 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA---LLGACKVHRNTD 457 (643)
Q Consensus 381 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~~~~~~g~~~ 457 (643)
.....|++.++...|+..... .+-+...-..|+..|...|+.++|..++..+|.+-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 456778888888888888763 333456677788899999999999999999875543333333 223333333333
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 458 LAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 458 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+... +++-...+|+|...-..++..|...|+.++|.+.+=.+.++.
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3332 333446689999999999999999999999998887776653
No 237
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.06 E-value=3.9 Score=46.43 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=89.0
Q ss_pred CCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHh
Q 045672 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300 (643)
Q Consensus 221 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 300 (643)
+++++|..-+.++. ...|.-.+..--++|.+.+|+.++ +|+...+..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 44555555554443 223333334344455555555553 56666666655555421 00
Q ss_pred hcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHH
Q 045672 301 KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT--IVGV 378 (643)
Q Consensus 301 ~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~l 378 (643)
....++-..-+|.++|+.++|.+. |...|++.+|+.+-.+|.. .-|... -..|
T Consensus 951 ----~~~~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L 1005 (1265)
T KOG1920|consen 951 ----EELMSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE---GKDELVILAEEL 1005 (1265)
T ss_pred ----HhccccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC---CHHHHHHHHHHH
Confidence 011123344567888888888654 4557788888888777642 122222 2456
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 379 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
..-+...+..-+|-++..+...+ ..-.+..|+++..+++|..+....
T Consensus 1006 ~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1006 VSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 66677777777777666655432 233456677778888888776655
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.92 E-value=0.17 Score=51.29 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR----EHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 372 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
...++.+..+|.+.|++++|...|+...+ +.|+. ..|..+..+|...|++++|++.+++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555566666666666666666666554 23432 23555566666666666666665554
No 239
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.86 E-value=0.74 Score=39.01 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=51.9
Q ss_pred HHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHccCC
Q 045672 418 LGRAGKLQEAVKLIHEM----PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG---TYILLSNIYANSQK 489 (643)
Q Consensus 418 ~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~ 489 (643)
..+.|++++|.+.|+.+ |..| ....-..++.++.+.+++++|...+++.+++.|.++. ++...+-++.....
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 34667777777777766 2222 2234455677788888888888888888888877543 23333333333333
Q ss_pred ---------------hhHHHHHHHHHHh
Q 045672 490 ---------------WDEVAEVRKTMRA 502 (643)
Q Consensus 490 ---------------~~~a~~~~~~m~~ 502 (643)
..+|..-|+.+.+
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 4566666666654
No 240
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.85 E-value=0.33 Score=42.11 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCChHH
Q 045672 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK----FYGIDPGREH 410 (643)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 410 (643)
...++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.++|+.+.+ .+|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666666666666666666542 33456666666677777777666666665532 3466666544
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.81 E-value=0.21 Score=46.92 Aligned_cols=91 Identities=20% Similarity=0.323 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CcchHHH
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM-------PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ---DPGTYIL 479 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~ 479 (643)
.|+.-++.| +.|++.+|...|... ...||...| |..++...|+++.|...|..+.+-.|+ -|.++.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 344444433 455566666665544 123444444 556666777777777777777765544 3456777
Q ss_pred HHHHHHccCChhHHHHHHHHHHhC
Q 045672 480 LSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 480 l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
|+.+..+.|+.++|..+++++.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777777777777777777654
No 242
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.74 E-value=0.29 Score=45.83 Aligned_cols=110 Identities=13% Similarity=0.139 Sum_probs=85.7
Q ss_pred HHHHHHhhcC--CCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------
Q 045672 324 DAMSVFSRMI--QKDVISWSTMISGLAQN-----GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG---------- 386 (643)
Q Consensus 324 ~A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 386 (643)
-.++.|.... ++|-.+|-+++..|..+ +..+-....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455676665 67888999999888754 567777788899999999999999999998876543
Q ss_pred ------CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH-HHHHHHHhC
Q 045672 387 ------FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ-EAVKLIHEM 434 (643)
Q Consensus 387 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m 434 (643)
.-+-++.+++.|.. +|+.||.++-..|+.+++|.+..- +..++.--|
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 22447889999988 699999999999999999998743 333444333
No 243
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.66 E-value=4.7 Score=45.79 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=24.5
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHH
Q 045672 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVT--WRALLGACKVHRNTDLAICAAKK 465 (643)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~ 465 (643)
+.+|..+|++.+|+.+-.++....|... -..|.+-+...++.-+|-++..+
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e 1024 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLE 1024 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence 3445555566666555555533223322 13444555555555555444443
No 244
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.60 E-value=1.3 Score=43.18 Aligned_cols=161 Identities=7% Similarity=0.068 Sum_probs=87.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC---C--ChH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKV-SRIKPN---YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID---P--GRE 409 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---p--~~~ 409 (643)
+|-.+..++-+.-++.+++.+-..-.. .|..|. -....++..+....+.++++++.|+...+- ... | ...
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~-A~~~~D~~LElq 163 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRY-AHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH-hhccCCceeeee
Confidence 344444444444445555544433221 122221 112223445555556677777777776542 111 1 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHhcC------C
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM-------PYEPDAVTWRA-----LLGACKVHRNTDLAICAAKKILNLD------P 471 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~------p 471 (643)
+|-.|...|++..++++|.-+..+. +.+.=..-|.. |.-+++..|....|.+.-+++.++. |
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 6777777888888777766544333 32211112222 3355777788877877777776532 2
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHH
Q 045672 472 QDPGTYILLSNIYANSQKWDEVAEVRKTM 500 (643)
Q Consensus 472 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 500 (643)
-.......++++|...|+.|.|..-++..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 23344557788888888887777666554
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.43 E-value=1 Score=43.37 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=59.3
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHH--HHHHhccCCHHHH
Q 045672 319 CGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI--TIVGV--LFACSHAGFVEDG 391 (643)
Q Consensus 319 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~l--l~a~~~~g~~~~a 391 (643)
.|+..+|...++++.+ .|..+|+-.=.++..+|+.+.-...+++.... ..||.. +|..- .-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555533 25556666666666666666666666665542 133332 22211 2233456666666
Q ss_pred HHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 392 WNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 392 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
.+.-++..+ +.| |.-.-.+....+.-.|+..++.+++.+-
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 665555443 222 3334445555666666666666666554
No 246
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.25 E-value=0.3 Score=45.74 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=25.2
Q ss_pred CCCcchHHHHHHHHHhC-----CCcchHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 045672 36 TRNSSSLLDDFTRFCYQ-----RDLPRAMKAMHAMQCHGVRADSVTYAELIKCC 84 (643)
Q Consensus 36 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 84 (643)
++|-.+|-+++..+... +..+=--..++.|.+.|+.-|..+|+.||+.+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~Llnvf 117 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVF 117 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhC
Confidence 44555555555555432 22333334445555566666666666666554
No 247
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.15 E-value=10 Score=41.19 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=17.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH
Q 045672 243 SIIGGFAQNSDVDEALNLYKRMK 265 (643)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~ 265 (643)
.|+..|...+++..|+.++-..+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhcc
Confidence 47777888888888888776554
No 248
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.12 E-value=0.99 Score=46.94 Aligned_cols=134 Identities=18% Similarity=0.242 Sum_probs=88.3
Q ss_pred HHHHhcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 045672 345 SGLAQNGYSQEALKLFES-MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423 (643)
Q Consensus 345 ~~~~~~g~~~~A~~l~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 423 (643)
....-+|+++++.++.+. -.-..+ | ..-...++.-+.+.|..+.|+++-..-..+ .++..+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCC
Confidence 444567888887776651 111112 2 334667777778888888887765443322 455678899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 424 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
++.|.++.++. ++...|..|.......|+++.|++++++. .-+..|+-.|.-.|+.+.-.++-+....+
T Consensus 334 L~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99998887765 47789999999999999999999999875 45777888888889888877777777666
Q ss_pred C
Q 045672 504 G 504 (643)
Q Consensus 504 g 504 (643)
|
T Consensus 403 ~ 403 (443)
T PF04053_consen 403 G 403 (443)
T ss_dssp T
T ss_pred c
Confidence 5
No 249
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.09 E-value=1.5 Score=48.00 Aligned_cols=69 Identities=9% Similarity=0.075 Sum_probs=43.7
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC-------HHHHHHHHHHHHHcCCCCchh
Q 045672 40 SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHA-------VEEAKLVHNHVLSGGFEPETF 110 (643)
Q Consensus 40 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~ 110 (643)
-.| ++|--+.|.|++++|.++...... ........|...+..+....+ -+....-++..++.....|++
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 345 688889999999999999966554 335566778888888876432 234555566665544433554
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=5.4 Score=38.20 Aligned_cols=173 Identities=16% Similarity=0.094 Sum_probs=106.0
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 045672 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI 404 (643)
Q Consensus 325 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 404 (643)
.++.+++...+....--.........|++.+|..+|....... .-+......+..++...|+++.|..++..+..+ .
T Consensus 122 lr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~ 198 (304)
T COG3118 122 LRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--A 198 (304)
T ss_pred HHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--c
Confidence 3344444443322222223445677888889999888887653 222445556778888899999999888876542 1
Q ss_pred CCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCcchHHHH
Q 045672 405 DPG-REHYSCMIDLLGRAGKLQEAVKLIHEMPYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLD--PQDPGTYILL 480 (643)
Q Consensus 405 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l 480 (643)
.-+ ......-+..+.+.....+...+-.+..-.| |...-..+...+...|+.+.|...+-.++..+ -.|...-..|
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 111 1112234555666655555555555554455 55566667777888899999888877777654 4466677777
Q ss_pred HHHHHccCChhH-HHHHHHHH
Q 045672 481 SNIYANSQKWDE-VAEVRKTM 500 (643)
Q Consensus 481 ~~~~~~~g~~~~-a~~~~~~m 500 (643)
+.++.-.|.-+. +.+++++|
T Consensus 279 le~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 279 LELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHhcCCCCHHHHHHHHHH
Confidence 777777774443 34444444
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.88 E-value=3.5 Score=43.56 Aligned_cols=160 Identities=14% Similarity=0.052 Sum_probs=100.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHh----ccCCHHHHHHHHHHhHHhcCCCCChH
Q 045672 340 WSTMISGLAQNGYSQEALKLFESMKVSR-IKPNY-----ITIVGVLFACS----HAGFVEDGWNHFKSMKKFYGIDPGRE 409 (643)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~ 409 (643)
...+++...-.|+-+.+++++.+..+.+ +.-.. .+|..++..+. .....+.+.+++..+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3344555555667777777666654422 21111 12222232222 245788899999998874 45554
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHH-HH
Q 045672 410 HYSC-MIDLLGRAGKLQEAVKLIHEMPY-E-----PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL-LS 481 (643)
Q Consensus 410 ~~~~-li~~~~~~g~~~~A~~~~~~m~~-~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~ 481 (643)
.|.. -...+...|++++|.+.|++.-. + -....+--+...+....++++|...+.++.+...-....|.- .+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 4433 34566778999999999987521 1 122334445566778899999999999999876555445544 45
Q ss_pred HHHHccCCh-------hHHHHHHHHHHh
Q 045672 482 NIYANSQKW-------DEVAEVRKTMRA 502 (643)
Q Consensus 482 ~~~~~~g~~-------~~a~~~~~~m~~ 502 (643)
-+|...|+. ++|.+++++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 555778888 888888887754
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.78 E-value=2.1 Score=36.30 Aligned_cols=114 Identities=12% Similarity=0.160 Sum_probs=60.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 045672 344 ISGLAQNGYSQEALKLFESMKVSRI--KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421 (643)
Q Consensus 344 i~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 421 (643)
.....+.|++++|.+.|+.+...=. +-....-..++.++.+.+++++|...+++.++.+.-.|+ ..|.....+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 3444566777777777777665421 111344555666777777777777777776664333333 2333333333322
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 422 GKLQEAVKLIHEM-PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 422 g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
...+.. +..+ ..+ +..+....|...|+++++.-|++.
T Consensus 96 ~~~~~~---~~~~~~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGS---LQSFFRSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhH---Hhhhcccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 221111 1111 111 112335678888999999889764
No 253
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.76 E-value=0.13 Score=31.39 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 441 VTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 441 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35677777788888888888888888888875
No 254
>PRK11906 transcriptional regulator; Provisional
Probab=93.73 E-value=3.3 Score=42.43 Aligned_cols=143 Identities=10% Similarity=0.030 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHhc---------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 045672 352 YSQEALKLFESMKV-SRIKPNY-ITIVGVLFACSH---------AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420 (643)
Q Consensus 352 ~~~~A~~l~~~m~~-~g~~p~~-~t~~~ll~a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 420 (643)
..+.|+.+|.+... +.+.|+. ..|..+..++.. .....+|.++-+...+ --+-|......+..++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 35578888888872 2356663 333333322211 2234455555555554 223356666666666677
Q ss_pred cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH--HHHHHHHHccCChhHHHHH
Q 045672 421 AGKLQEAVKLIHEM-PYEPDAV-TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY--ILLSNIYANSQKWDEVAEV 496 (643)
Q Consensus 421 ~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~a~~~ 496 (643)
.|+++.|...|++. ...||.. +|......+.-.|+.++|.+.+++.++++|....+- -..++.|...+ .++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 77788888888877 4556543 455444556667888888888888888888644332 23334555544 4555554
Q ss_pred H
Q 045672 497 R 497 (643)
Q Consensus 497 ~ 497 (643)
+
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 4
No 255
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.61 E-value=6.4 Score=36.95 Aligned_cols=157 Identities=19% Similarity=0.207 Sum_probs=86.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc-
Q 045672 345 SGLAQNGYSQEALKLFESMKVSRI--KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA- 421 (643)
Q Consensus 345 ~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~- 421 (643)
..-.+.|++++|.+.|+.+...-. +-...+...++.++.+.+++++|....++..+.++-.|++. |...+.++..-
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~~ 120 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYFF 120 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhc
Confidence 334455666666666666554321 11134444555555566666666666666655555445432 22222222211
Q ss_pred ------CCHHHHHHH-------HHhCC---CCCCHHH----------H-H-HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 422 ------GKLQEAVKL-------IHEMP---YEPDAVT----------W-R-ALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 422 ------g~~~~A~~~-------~~~m~---~~p~~~~----------~-~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
.+...+.+- +++.| ..||... . . .+..-|.+.|.+..|..-++++++.-|+.
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 111122222 22222 1233221 1 1 22345788999999999999999876654
Q ss_pred c---chHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 474 P---GTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 474 ~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+ ..+..+..+|...|..++|.+.-+-+..
T Consensus 201 ~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 201 SAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred cchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3 4566788899999999999998776653
No 256
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.45 E-value=0.22 Score=30.25 Aligned_cols=32 Identities=34% Similarity=0.347 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
.|..+...+...|++++|+..++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566667777888888888888888877764
No 257
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.43 E-value=5.1 Score=42.34 Aligned_cols=78 Identities=19% Similarity=0.165 Sum_probs=35.6
Q ss_pred hhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC-------ChhhHHHHHHHHHhcCCHHHHHHH
Q 045672 288 LLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK-------DVISWSTMISGLAQNGYSQEALKL 359 (643)
Q Consensus 288 ~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~l 359 (643)
..+.+.+++..+.+ +|......---...+...|++++|.+.|++.... ....+--+.-.+.-.+++++|.+.
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 34445555555554 2222222223334455566666666666644321 111222233334445556666666
Q ss_pred HHHHHH
Q 045672 360 FESMKV 365 (643)
Q Consensus 360 ~~~m~~ 365 (643)
|.++.+
T Consensus 328 f~~L~~ 333 (468)
T PF10300_consen 328 FLRLLK 333 (468)
T ss_pred HHHHHh
Confidence 665554
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.38 E-value=4.6 Score=34.54 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 045672 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384 (643)
Q Consensus 341 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 384 (643)
..++..+.+.+.......+++.+...+ ..+....+.++..|++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 344445555555555555555555443 2334444455555543
No 259
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.32 E-value=14 Score=40.02 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045672 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450 (643)
Q Consensus 371 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 450 (643)
...|.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-+.+. .+.-|.-...+|
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c 754 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEAC 754 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHH
Confidence 33445555556666777777766554432 2666667666777777777777666666552 234455566777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHH
Q 045672 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 498 (643)
.+.|+.++|.+++-+.-. +.-...+|.+.|++.+|.++--
T Consensus 755 ~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 777777777777665422 1155667777777777776543
No 260
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.23 E-value=3.5 Score=43.00 Aligned_cols=104 Identities=19% Similarity=0.221 Sum_probs=66.8
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 045672 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393 (643)
Q Consensus 314 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 393 (643)
+...++|+++.|.++-++.. +...|..|.....++|+++-|.+.|++... |..|+--|.-.|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 44557888888888877665 556888899888899999888888887543 4455556666777766666
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 045672 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435 (643)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (643)
+.+..... | -++....++.-.|+.++..+++.+.+
T Consensus 395 l~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 395 LAKIAEER-G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 65555442 2 13334444455677777766666654
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.20 E-value=1.2 Score=42.11 Aligned_cols=92 Identities=21% Similarity=0.170 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHH
Q 045672 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPN----YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG-REHYSCM 414 (643)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 414 (643)
|+.-+.. .+.|++.+|...|...++.. |+ ...+-.|..++...|+++.|..+|..+.+.++-.|. ++.+--|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 5554443 34566777777777777642 22 223445677777777777777777777776555553 3556666
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 045672 415 IDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m 434 (643)
.....+.|+.++|...+++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 66666666666666666655
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.13 E-value=7 Score=35.99 Aligned_cols=161 Identities=20% Similarity=0.183 Sum_probs=107.6
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcCCC--C-hhhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHH
Q 045672 308 LNNALLDMYCKCGSLEDAMSVFSRMIQK--D-VISWSTMIS-GLAQNGYSQEALKLFESMKVSRIKP----NYITIVGVL 379 (643)
Q Consensus 308 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~--~-~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll 379 (643)
.+..+...+...++...+...+...... + ......... .+...|+.++|...|.+... ..| ....+....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~ 174 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALG 174 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhh
Confidence 3344455555566666676666665432 1 122222333 67888889999988888855 233 233444444
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCH
Q 045672 380 FACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNT 456 (643)
Q Consensus 380 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~ 456 (643)
..+...++.+.+...+....+. ... ....+..+...+...+++++|...+... ...|+ ...+..+...+...+..
T Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (291)
T COG0457 175 ALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRY 252 (291)
T ss_pred hHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCH
Confidence 4466778899999888888763 333 4677788888888888999999888777 33444 44555555555577789
Q ss_pred HHHHHHHHHHHhcCCC
Q 045672 457 DLAICAAKKILNLDPQ 472 (643)
Q Consensus 457 ~~a~~~~~~~~~~~p~ 472 (643)
+.+...+.+.....|.
T Consensus 253 ~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 253 EEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 9999999999998886
No 263
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.96 E-value=9.7 Score=37.14 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=30.1
Q ss_pred HHcCCHHHHHHHHhhCCC------CC------cchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 045672 218 AKLGELRNAECVFNEMPT------RD------LVVWNSIIGGFAQNSDVDEALNLYKRMKR 266 (643)
Q Consensus 218 ~~~g~~~~A~~~f~~~~~------~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (643)
.+.|+++.|...+.+... |+ ...||.-...+.+..++++|..++++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 456888888888877654 21 13455444444444388888777776543
No 264
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.93 E-value=5.4 Score=34.10 Aligned_cols=114 Identities=12% Similarity=0.114 Sum_probs=73.0
Q ss_pred cchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 045672 39 SSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118 (643)
Q Consensus 39 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 118 (643)
...-..+|..+...+.......+++.+...+ ..+...++.++..+++.+ .......+.. ..+.+.....++.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~ 78 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKL 78 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHH
Confidence 3445568888888888999999999888776 367778888888888653 2333333221 1233444556777
Q ss_pred HHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhC-CChhHHHHHHHH
Q 045672 119 HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA-KMNDKALELLIF 165 (643)
Q Consensus 119 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~ 165 (643)
+.+.+.++++.-++.++.. |...+..+... ++++.|.+.+.+
T Consensus 79 c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh
Confidence 7777777777777776643 33334444444 667777766664
No 265
>PRK11906 transcriptional regulator; Provisional
Probab=92.86 E-value=2.2 Score=43.63 Aligned_cols=116 Identities=9% Similarity=0.015 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHh---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 045672 387 FVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGR---------AGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHR 454 (643)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 454 (643)
..+.|..+|.+......+.|+ ...|..+...+.. .....+|.++-++. ...| |......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456778888888733345665 3344444333221 22345566666555 3333 6666666666677778
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 455 NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 455 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+++.|...|+++..++|+.+.+|...+....-.|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999988554
No 266
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.54 E-value=20 Score=39.61 Aligned_cols=185 Identities=12% Similarity=0.146 Sum_probs=85.3
Q ss_pred HhcCCHHHHHHHHhhcCCC----------ChhhHHHHHHH--HHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHH
Q 045672 317 CKCGSLEDAMSVFSRMIQK----------DVISWSTMISG--LAQNGYSQEALKLFE--------SMKVSRIKPNYITIV 376 (643)
Q Consensus 317 ~~~g~~~~A~~~~~~m~~~----------~~~~~~~li~~--~~~~g~~~~A~~l~~--------~m~~~g~~p~~~t~~ 376 (643)
+-.|++..|...++.|.+. ....+...+.| +...|+.+.|+..|. .....+..++...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 3456677777776666321 11233333333 334678888888886 334444333333332
Q ss_pred HH--HHHHhc--cCCHHH--HHHHHHHhHHhcCCCCC--hHHHHHH-HHHHHhc---------CCHHHHHHHH-HhCCCC
Q 045672 377 GV--LFACSH--AGFVED--GWNHFKSMKKFYGIDPG--REHYSCM-IDLLGRA---------GKLQEAVKLI-HEMPYE 437 (643)
Q Consensus 377 ~l--l~a~~~--~g~~~~--a~~~~~~~~~~~~~~p~--~~~~~~l-i~~~~~~---------g~~~~A~~~~-~~m~~~ 437 (643)
.+ +..+.. ....++ ..++++.+.....-.|+ ..++.++ +.++..- ..+.++++.. +..+..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 21 111111 112222 55666655442222332 2223333 2222211 1233444444 333211
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC-CcchH-----HHHHHHHHccCChhHHHHHHHHHH
Q 045672 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLD---PQ-DPGTY-----ILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 438 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~-~~~~~-----~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
--....-++++.-.-.|+..+..........+- |+ ....| ..+.+.|...|+.++|.....+..
T Consensus 532 ~l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 111122334444222677777666655555432 22 11233 245556788899999999887664
No 267
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.34 E-value=5.7 Score=33.01 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=50.7
Q ss_pred hcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 045672 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 397 (643)
.||++......+-.+. .+..-....+..+.+.|+-+.-.++++++.+. -.|++..+..+..||.+.|+..++.+++.+
T Consensus 68 ~C~NlKrVi~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp G-S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcchHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3444444444433321 12233455667778888888888888887653 377888888889999999999999999888
Q ss_pred hHHhcCC
Q 045672 398 MKKFYGI 404 (643)
Q Consensus 398 ~~~~~~~ 404 (643)
+.++ |+
T Consensus 146 ACek-G~ 151 (161)
T PF09205_consen 146 ACEK-GL 151 (161)
T ss_dssp HHHT-T-
T ss_pred HHHh-ch
Confidence 8774 54
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.32 E-value=3.5 Score=42.35 Aligned_cols=147 Identities=15% Similarity=0.093 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 045672 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430 (643)
Q Consensus 351 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 430 (643)
.+.+.-+++-++..+ +.||..+-..++ +--.+..+.++.+++++..+. + ...+..- ......|.. .+.
T Consensus 182 Rnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~~---~e~ 249 (539)
T PF04184_consen 182 RNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGHF---WEA 249 (539)
T ss_pred CCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccch---hhh
Confidence 344444555555554 456654433333 333455678888888777652 1 0000000 000011111 111
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCcC
Q 045672 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ--DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508 (643)
Q Consensus 431 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 508 (643)
+..-..+|-..+=..+...+.+.|+.++|++.++++++..|. +......|+..+...+.+.++..++.+-.+..+++.
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS 329 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS 329 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch
Confidence 111111122333345666678888888888888888877665 445777888888888888888888887765555444
Q ss_pred C
Q 045672 509 P 509 (643)
Q Consensus 509 ~ 509 (643)
.
T Consensus 330 A 330 (539)
T PF04184_consen 330 A 330 (539)
T ss_pred H
Confidence 3
No 269
>PRK15331 chaperone protein SicA; Provisional
Probab=92.06 E-value=4.2 Score=35.45 Aligned_cols=84 Identities=11% Similarity=-0.022 Sum_probs=35.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 427 (643)
-+.|++++|..+|+-+...+ .-|..-+..|..+|-..+++++|...|.....- . .-|+..+--....|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHH
Confidence 34555555555555544422 112222333333334445555555555444321 1 11222222233444455555555
Q ss_pred HHHHHhC
Q 045672 428 VKLIHEM 434 (643)
Q Consensus 428 ~~~~~~m 434 (643)
...|+..
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 5544443
No 270
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.79 E-value=10 Score=34.61 Aligned_cols=160 Identities=14% Similarity=0.075 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 417 (643)
..||-+.--+...|+++.|.+.|+...+....- ..+...-.-++.-.|++..|.+=|...-+.-.-.|=...|--++
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-- 176 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-- 176 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH--
Confidence 356666666667777777777777766543211 22222222234445677766655544433211111112222221
Q ss_pred HHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------cchHHHHHHHHHccCC
Q 045672 418 LGRAGKLQEAVKLI-HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD-------PGTYILLSNIYANSQK 489 (643)
Q Consensus 418 ~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~ 489 (643)
.+.-++.+|..-+ ++.. ..|..-|...|-.+.--.-.+ +.+++++.+...++ ..+|.-|+.-|...|.
T Consensus 177 -E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 177 -EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred -HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 2333455555433 3331 245555665554432211111 12233333222221 3588999999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 045672 490 WDEVAEVRKTMRARG 504 (643)
Q Consensus 490 ~~~a~~~~~~m~~~g 504 (643)
.++|..+|+.....+
T Consensus 253 ~~~A~~LfKLaiann 267 (297)
T COG4785 253 LDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887644
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.64 E-value=0.33 Score=30.22 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=20.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 476 TYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 476 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999988854
No 272
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.42 E-value=1.8 Score=35.75 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=43.7
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHH---HHHHHHHHHHcC
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM----PYEPDAVT---WRALLGACKVHR 454 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~---~~~ll~~~~~~g 454 (643)
.+..|+++.|++.|..... -.+.....||.-..+|.-+|+.++|++-+++. +-+ .... |..-...|+..|
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 3455555555555555543 12234455555555555555555555554443 111 1111 222223356667
Q ss_pred CHHHHHHHHHHHHhcCC
Q 045672 455 NTDLAICAAKKILNLDP 471 (643)
Q Consensus 455 ~~~~a~~~~~~~~~~~p 471 (643)
+-+.|..-|+.+-+++.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 77777776666665554
No 273
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.05 E-value=0.8 Score=40.79 Aligned_cols=88 Identities=20% Similarity=0.204 Sum_probs=67.2
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCC
Q 045672 417 LLGRAGKLQEAVKLIHEM-PYEP------DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 489 (643)
-+.+.|++++|..-|... ..-| ..+.|..-..+..+.+..+.|+.-..++++++|....++..-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355677777777766655 1112 123444445667888999999999999999999888888888999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 045672 490 WDEVAEVRKTMRARG 504 (643)
Q Consensus 490 ~~~a~~~~~~m~~~g 504 (643)
+++|.+=++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998743
No 274
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.92 E-value=18 Score=39.86 Aligned_cols=83 Identities=12% Similarity=0.094 Sum_probs=37.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh---cCCchhHHhHHHHHHHh---
Q 045672 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHDLILNNALLDMYCK--- 318 (643)
Q Consensus 245 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~---~~~~~~~~~~Li~~y~~--- 318 (643)
...+.-.|+++.|++++.+ ..+...|.+.+...+.-+.-+.-.+.. ...+.. -.+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~---~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSS---SAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCcc---ccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445567999999998876 333455666666665554332222111 122222 11111445667777765
Q ss_pred cCCHHHHHHHHhhc
Q 045672 319 CGSLEDAMSVFSRM 332 (643)
Q Consensus 319 ~g~~~~A~~~~~~m 332 (643)
..+..+|...|--+
T Consensus 340 ~td~~~Al~Y~~li 353 (613)
T PF04097_consen 340 ITDPREALQYLYLI 353 (613)
T ss_dssp TT-HHHHHHHHHGG
T ss_pred ccCHHHHHHHHHHH
Confidence 45677777766555
No 275
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.91 E-value=2.6 Score=40.74 Aligned_cols=159 Identities=12% Similarity=0.013 Sum_probs=117.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH----HHHHHhcCCH
Q 045672 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM----IDLLGRAGKL 424 (643)
Q Consensus 349 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~ 424 (643)
-+|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...|+...|.-+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888899999998875 566778888888899999999999999988876 345666555443 4455689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHccCChhHHHHHHH
Q 045672 425 QEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ----DPGTYILLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 425 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 498 (643)
++|++.-++. .+.| |.-.-.++.......|+..++.+...+-...-.. -...|-..+-.|...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998887 5544 4556667777788899999999888775443221 12345566677788899999999998
Q ss_pred HHHhCCCCcCCc
Q 045672 499 TMRARGITKEPG 510 (643)
Q Consensus 499 ~m~~~g~~~~~~ 510 (643)
.-.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 766555555554
No 276
>PRK09687 putative lyase; Provisional
Probab=90.79 E-value=17 Score=35.41 Aligned_cols=72 Identities=6% Similarity=-0.045 Sum_probs=36.2
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 383 (643)
.+-...+.++++.|+..-...+.+.+..++ ..-..+.++...|.. +|+..+.++... .||...-...+.+|.
T Consensus 207 ~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 207 EIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 333444455555555332222333333333 223456677777765 577777776653 346555555555543
No 277
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.74 E-value=7 Score=34.39 Aligned_cols=132 Identities=12% Similarity=0.023 Sum_probs=77.8
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCC
Q 045672 59 MKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138 (643)
Q Consensus 59 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 138 (643)
++.++.+.+.+++|+...+..+++.+.+.|.+....+ ++..++-+|.......+-.+. +....+.++=-.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 4555666678889999999999999999888765544 344445555543333332222 2233333333333332
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH---HHHHHHHH
Q 045672 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIK 200 (643)
Q Consensus 139 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~---~~~~~~~~ 200 (643)
=...+..++..+...|++-+|+++.+.... .+......++.+..+.+|.. .++.....
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 223577788889999999999998877532 22233344555655554443 44444443
No 278
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.66 E-value=23 Score=36.73 Aligned_cols=17 Identities=24% Similarity=0.471 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhcCCCCc
Q 045672 458 LAICAAKKILNLDPQDP 474 (643)
Q Consensus 458 ~a~~~~~~~~~~~p~~~ 474 (643)
.|.++.+++.+.+|.-+
T Consensus 364 ~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 35677888887777544
No 279
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.35 E-value=16 Score=34.40 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=91.5
Q ss_pred HhcCCHHHHHHHHhhcCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhcc--
Q 045672 317 CKCGSLEDAMSVFSRMIQKDV------ISWSTMISGLAQNGYSQEALKLFESMKVSR-IKPN--YITIVGVLFACSHA-- 385 (643)
Q Consensus 317 ~~~g~~~~A~~~~~~m~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~-- 385 (643)
.+.|++++|.+.|+.+..+.+ .+--.++-++-+.+++++|+..+++....- -.|| ...|...+..+...
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 356888888888888754321 223334556667888888888888876642 2233 23333333322221
Q ss_pred --CC---HHHHHHHHHHhHHhcCC---CCChH------------HHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CH
Q 045672 386 --GF---VEDGWNHFKSMKKFYGI---DPGRE------------HYSCMIDLLGRAGKLQEAVKLIHEM----PYEP-DA 440 (643)
Q Consensus 386 --g~---~~~a~~~~~~~~~~~~~---~p~~~------------~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~ 440 (643)
.+ ..+|..-|+.+.+++.- .||.. +=..+..-|.+.|.+..|..-+++| +..+ ..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ 204 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR 204 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence 22 23444555555554221 12221 1123456788999998888877777 2112 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 441 VTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 441 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
..+-.+..+|...|-.++|....+-+....|+++
T Consensus 205 eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 205 EALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 3455677889999999999888766655556554
No 280
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.33 E-value=33 Score=37.94 Aligned_cols=115 Identities=8% Similarity=0.033 Sum_probs=54.7
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 045672 350 NGYSQEALKLFESMKVSR-IKPNYI--TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426 (643)
Q Consensus 350 ~g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 426 (643)
..+.+.|..++....... +.+... ....+.......+..+++...+...... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 345567777777663332 333322 2222322222222244555555543321 1233333444444447777777
Q ss_pred HHHHHHhCCCC-CCHHHHHH-HHHHHHHcCCHHHHHHHHHHHH
Q 045672 427 AVKLIHEMPYE-PDAVTWRA-LLGACKVHRNTDLAICAAKKIL 467 (643)
Q Consensus 427 A~~~~~~m~~~-p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~ 467 (643)
+...|..|+.. .+...|.- +..+....|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77777777321 11112221 2334445677777777777763
No 281
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.30 E-value=20 Score=35.42 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=94.8
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHH-cCCCCC---HHHHHHHHHHHhcCChhHhHHHHHHHHhh---cC----Cchh
Q 045672 239 VVWNSIIGGFAQNSDVDEALNLYKRMKR-AGFAAD---QSTLTSVLRACTGLALLELGTQVHVHVLK---YD----HDLI 307 (643)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~---~~----~~~~ 307 (643)
.+|-.+..++-+..++.+++.+-..-.. .|..|. .....++-.|....+.++++.+.|+.+.+ .. ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3455555666555566666665443332 233331 12334466677777888888888888887 11 2346
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhc-------CCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCC
Q 045672 308 LNNALLDMYCKCGSLEDAMSVFSRM-------IQKDVI------SWSTMISGLAQNGYSQEALKLFESMK----VSRIKP 370 (643)
Q Consensus 308 ~~~~Li~~y~~~g~~~~A~~~~~~m-------~~~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p 370 (643)
++.+|...|.+..++++|.-...+. .-.|.. +...|..++...|+..+|.+.-++.. ..|-+|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 8888889999888888876544433 212322 12234456667777777777776643 334232
Q ss_pred C-HHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 045672 371 N-YITIVGVLFACSHAGFVEDGWNHFKSMK 399 (643)
Q Consensus 371 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 399 (643)
- ......+...|...|+.+.|+.-|+...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 2334455566777778777776665543
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.02 E-value=23 Score=35.72 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ----DPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 438 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
....+|..+...+++.|+++.|...+.++....+. .+.....-+......|+.++|...++...+..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34557899999999999999999999999886522 45677778999999999999999998887743
No 283
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.61 E-value=33 Score=37.86 Aligned_cols=85 Identities=8% Similarity=0.078 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 045672 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419 (643)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 419 (643)
-+.|+.+|.+.++.++-.++.+.-. .|.. ..-+...+..|.+.+-.++|..+-... +. +. ..+--.+-
T Consensus 434 ttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~----~~--he---~vl~ille 501 (933)
T KOG2114|consen 434 TTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKF----KK--HE---WVLDILLE 501 (933)
T ss_pred HHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHh----cc--CH---HHHHHHHH
Confidence 3456666666666665555444332 2211 111233444555555566664443222 21 11 12222344
Q ss_pred hcCCHHHHHHHHHhCCC
Q 045672 420 RAGKLQEAVKLIHEMPY 436 (643)
Q Consensus 420 ~~g~~~~A~~~~~~m~~ 436 (643)
..|++++|++.+..+|.
T Consensus 502 ~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 502 DLHNYEEALRYISSLPI 518 (933)
T ss_pred HhcCHHHHHHHHhcCCH
Confidence 56778888888887753
No 284
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.58 E-value=2.4 Score=40.72 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=59.3
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESMKV-----SRIKPNYITIVGV 378 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~l 378 (643)
.++..++..+..+|+.+.+.+.++++... |...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45677888899999999999998888543 566899999999999999999999988754 5677776665554
Q ss_pred HHH
Q 045672 379 LFA 381 (643)
Q Consensus 379 l~a 381 (643)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 285
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.52 E-value=0.65 Score=28.17 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
+|..+...+...|++++|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666677778888888888887777773
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.41 E-value=0.66 Score=28.82 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNL 469 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 469 (643)
+|..|...|...|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677778888888888888888885543
No 287
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.26 E-value=2 Score=41.21 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
++..++..+...|+++.+...++++++.+|-+...|..++.+|.+.|+...|...++++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3445556666777777777777777777777777777788888888888777777777764
No 288
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.13 E-value=19 Score=35.28 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045672 254 VDEALNLYKRMKRAGFAADQSTLTSVLRA 282 (643)
Q Consensus 254 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 282 (643)
+++.+.+++.|.+.|++-+..++.+..-.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i 106 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALII 106 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHH
Confidence 45567788899999999988888664443
No 289
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.28 E-value=21 Score=33.02 Aligned_cols=87 Identities=16% Similarity=0.329 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHhHHhcCCCC-ChHHHHHH---HHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHH---HHH--HHHH-
Q 045672 386 GFVEDGWNHFKSMKKFYGIDP-GREHYSCM---IDLLGRAGKLQEAVKLIHEM---PYEPDAVTWRA---LLG--ACKV- 452 (643)
Q Consensus 386 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l---i~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~---ll~--~~~~- 452 (643)
.++++|+..|+..-+-|.... +...--|+ .+.-+..+++.+|+++|++. ....+..-|.. ++. .|.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 456666666666554332222 22222233 33445678899999999887 23333333432 222 2333
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 045672 453 HRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 453 ~g~~~~a~~~~~~~~~~~p~ 472 (643)
..+.-.+...+++..+++|.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPA 227 (288)
T ss_pred cccHHHHHHHHHHHHhcCCc
Confidence 36777788889999999997
No 290
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.48 E-value=3.4 Score=35.18 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=41.8
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
...++.++++.++..+.-+.|+.+..-..-+..+...|+|++|.++++...+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 347777888888888877888877777777788888888888888888777654
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.38 E-value=3.7 Score=35.60 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=26.3
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..++.+.++.++.-+.-+.|..+..-..-+..+...|+|.+|.++++.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555555555555554444555555555555555555555443
No 292
>PRK09687 putative lyase; Provisional
Probab=87.35 E-value=30 Score=33.70 Aligned_cols=121 Identities=16% Similarity=0.007 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG-FVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 417 (643)
.-...+.++.+.|+ ++|+..+-.+.. .+|...-...+.++.+.+ .-+.+...+..+.. .++..+-...+.+
T Consensus 144 VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~a 215 (280)
T PRK09687 144 VRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIG 215 (280)
T ss_pred HHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHH
Confidence 33344444444444 344444444443 233333333344444332 12334444444433 2444555555556
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
+++.|...-.-.+++.+. .++ .....+.++...|+. +|...+.++.+..|
T Consensus 216 Lg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 216 LALRKDKRVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHccCChhHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 666665322222233332 122 223455556666653 46666666666555
No 293
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.96 E-value=21 Score=31.47 Aligned_cols=134 Identities=12% Similarity=0.121 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 045672 95 LVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174 (643)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 174 (643)
+....+.+.++.|+...+..+++.+.+.|++.....++..-.-+|...-...+-.+. +....+.++--+|...
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR----- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR----- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-----
Confidence 344455566777888888888888888888777777666544444444333332222 1222233332223211
Q ss_pred hhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCCh
Q 045672 175 MFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254 (643)
Q Consensus 175 ~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 254 (643)
. + ..+..++..+...|++-+|.++......-+...-..++.+-.+.++.
T Consensus 88 -------------L-------------~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~ 136 (167)
T PF07035_consen 88 -------------L-------------G-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDD 136 (167)
T ss_pred -------------h-------------h-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCH
Confidence 0 0 01223566777788888888888776555555556667776666665
Q ss_pred hHHHHHHHHHHH
Q 045672 255 DEALNLYKRMKR 266 (643)
Q Consensus 255 ~~A~~~~~~m~~ 266 (643)
.-=..+|+-..+
T Consensus 137 ~lf~~V~~ff~~ 148 (167)
T PF07035_consen 137 QLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHHHH
Confidence 555555544444
No 294
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.19 E-value=1.9 Score=28.15 Aligned_cols=27 Identities=7% Similarity=-0.075 Sum_probs=15.5
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhC
Q 045672 42 LLDDFTRFCYQRDLPRAMKAMHAMQCH 68 (643)
Q Consensus 42 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 68 (643)
|..+-..|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555666666666666665554
No 295
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.18 E-value=40 Score=33.96 Aligned_cols=148 Identities=12% Similarity=0.013 Sum_probs=71.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHH
Q 045672 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP---NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG--REH 410 (643)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 410 (643)
...+|..++..+.+.|+++.|...+.++...+..+ .......-....-..|+..+|...++...+. .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 34467777777777777777777777766533111 2222333344445566777777766666551 11111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 045672 411 YSCMIDLLGRAGKLQEAVKL-IHEMPYEPDAVTWRALLGACKVH------RNTDLAICAAKKILNLDPQDPGTYILLSNI 483 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 483 (643)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000011222222223333 788889999999999999877777777766
Q ss_pred HHc
Q 045672 484 YAN 486 (643)
Q Consensus 484 ~~~ 486 (643)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 643
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.94 E-value=22 Score=31.86 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC------hHH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY--ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG------REH 410 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~ 410 (643)
.+..+..-|++.|+.++|++.|.++.+....|.. ..+..++..+...+++..+.....+......-..+ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3444555555555555555555555544333332 22334445555555555555555444432111011 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 411 YSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
|..|. +...+++.+|-+.|-+.
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 33332 22356777777776655
No 297
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.73 E-value=1 Score=38.78 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=49.5
Q ss_pred HHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCC
Q 045672 45 DFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124 (643)
Q Consensus 45 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 124 (643)
+|..+.+.+.+.....+++.+...+...+....+.++..|++.++.+.....++. .+.+-...++..+-+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4666777777788888888777665555677777788888777665555555441 111222344455555555
Q ss_pred hhHHHHHHccCC
Q 045672 125 LEEAQVLFDQMP 136 (643)
Q Consensus 125 ~~~A~~~f~~m~ 136 (643)
+++|.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 555555555443
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.69 E-value=1.9 Score=26.05 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKV 365 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 365 (643)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566677777777777777777777765
No 299
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.67 E-value=13 Score=32.55 Aligned_cols=121 Identities=16% Similarity=0.091 Sum_probs=69.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHH--HHHHHhcC
Q 045672 347 LAQNGYSQEALKLFESMKVSRIKPNYI-TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE-HYSCM--IDLLGRAG 422 (643)
Q Consensus 347 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--i~~~~~~g 422 (643)
+++.|..++|+.-|.++.+.|...-++ ..........+.|+...|...|+++-+... .|-+. -...| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccc
Confidence 355666777777777777766432211 111122334567777777777777766422 22211 11111 22355677
Q ss_pred CHHHHHHHHHhCCCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 423 KLQEAVKLIHEMPYE--PD-AVTWRALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 423 ~~~~A~~~~~~m~~~--p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
.+++.....+.+... |- ...-.+|.-+-.+.|++..|.+.|.++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888877777776322 22 22334555556778888888888888766
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.58 E-value=24 Score=30.77 Aligned_cols=87 Identities=17% Similarity=0.113 Sum_probs=48.8
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPGRE-HYSCMIDLLGRAGKLQEAVKLIHEMP-YEPDAVTWRALLGACKVHRNTDLA 459 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~a 459 (643)
-...++.+++..++..+.- +.|... .-..-.-.+.+.|++++|..+|+++. ..|....-.+|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 3455677777777776654 344322 22223344567788888888887773 234444555666666554433333
Q ss_pred HHHHHHHHhcCC
Q 045672 460 ICAAKKILNLDP 471 (643)
Q Consensus 460 ~~~~~~~~~~~p 471 (643)
....+++++.++
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 444555555554
No 301
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.99 E-value=6.6 Score=30.60 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
+.-++.+-++.+....+.|++....+.|.||-+.+++..|.++|+.++.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3446667777777788899999999999999999999999999998876433 24446666554
No 302
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.97 E-value=13 Score=29.20 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 045672 88 HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167 (643)
Q Consensus 88 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 167 (643)
...++|.-|-+.+...+-. ...+--.-++.+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+.+|.
T Consensus 19 HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred hHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 4567787777777665422 33333334456778999999999999999999999988765 45677777777777787
Q ss_pred HCCCCCChhhHHH
Q 045672 168 REGVRPNMFTYSA 180 (643)
Q Consensus 168 ~~g~~p~~~t~~~ 180 (643)
.+| .|...+|..
T Consensus 96 ~sg-~p~lq~Faa 107 (115)
T TIGR02508 96 ASG-DPRLQTFVA 107 (115)
T ss_pred hCC-CHHHHHHHH
Confidence 766 555555544
No 303
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.75 E-value=8.8 Score=30.28 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 355 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5666677777778899999999999999999999999999999987644 33336776664
No 304
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.50 E-value=5.5 Score=36.00 Aligned_cols=75 Identities=20% Similarity=0.339 Sum_probs=53.0
Q ss_pred HhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHccCChhH
Q 045672 419 GRAGKLQEAVKLIHEMPYEP--DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ----DPGTYILLSNIYANSQKWDE 492 (643)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 492 (643)
.+.|+ ++|.+.|-++.-.| +....-..+..|....|.++++.++.+++++.++ |+..+.+|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444 56777776663333 3333444445566688999999999999986422 67899999999999999988
Q ss_pred HH
Q 045672 493 VA 494 (643)
Q Consensus 493 a~ 494 (643)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 75
No 305
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.30 E-value=1.9 Score=41.67 Aligned_cols=110 Identities=12% Similarity=0.037 Sum_probs=77.7
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCH
Q 045672 380 FACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE-PDAVTWRALLGACKVHRNT 456 (643)
Q Consensus 380 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~ 456 (643)
+-|.++|.+++|+..|..... +.| +..++..-..+|.+..++..|..-.+.. .+. .-.-.|..-..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 468899999999999987764 455 7888888888999999998887655443 111 1122455555566667899
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHH
Q 045672 457 DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEV 496 (643)
Q Consensus 457 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 496 (643)
++|.+-++.+++++|++.. |-..|.......|+.-+
T Consensus 182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHH
Confidence 9999999999999998643 44445554555554433
No 306
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.18 E-value=1.6 Score=26.25 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=24.5
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 475 GTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 475 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..+..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4688999999999999999999998875
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.68 E-value=14 Score=33.04 Aligned_cols=94 Identities=19% Similarity=0.095 Sum_probs=64.7
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHH
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKD------VISWSTMISGLAQNGYSQEALKLFESMKVS---RIKPNYITIVG 377 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ 377 (643)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......|++..+.....+.... |-.++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345678999999999999999999986653 235667788888899999988888776543 22222222112
Q ss_pred HHH--HHhccCCHHHHHHHHHHhHH
Q 045672 378 VLF--ACSHAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 378 ll~--a~~~~g~~~~a~~~~~~~~~ 400 (643)
+.. ++...+++..|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 222 23456888888888866654
No 308
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.45 E-value=38 Score=31.45 Aligned_cols=24 Identities=8% Similarity=-0.017 Sum_probs=18.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 450 CKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
-...+++.+|+.+|+++....-++
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 356788999999999987655443
No 309
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.40 E-value=41 Score=31.81 Aligned_cols=245 Identities=18% Similarity=0.264 Sum_probs=147.7
Q ss_pred CCCCchhHHHHHHHHH-HHcCCHHHHHHHHhhCCC----C---CcchHHHHHHHHHhCCChhHHHHHHHHHHH---cCC-
Q 045672 202 GFESDVFVRSALIDIY-AKLGELRNAECVFNEMPT----R---DLVVWNSIIGGFAQNSDVDEALNLYKRMKR---AGF- 269 (643)
Q Consensus 202 g~~~~~~~~~~li~~y-~~~g~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~- 269 (643)
+-+||+..-|..-+.- .+....++|..-|+++.+ + .-.+.-.||..+.+.|++++.++.|.+|.. ..+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4455555544332221 234568889888887754 2 223556789999999999999999998864 112
Q ss_pred -CCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh---cCCc----hhHHhHHHHHHHhcCCHHHHHHHHhhcCCC------
Q 045672 270 -AADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHD----LILNNALLDMYCKCGSLEDAMSVFSRMIQK------ 335 (643)
Q Consensus 270 -~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~---~~~~----~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~------ 335 (643)
.-+..+.++++.-.+...+.+.-..+++...+ -..+ ..+-+.|...|...|.+.+-.+++.++.+.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 22455677777776666666665555554443 1111 133456778888888888888888877211
Q ss_pred --C-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHh-----ccCCHHHHHHHHHHhHH
Q 045672 336 --D-------VISWSTMISGLAQNGYSQEALKLFESMKVSR-IKPNYITIVGVLFACS-----HAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 336 --~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~ 400 (643)
| ...|..-|..|....+-.+-..+|++...-. --|.+. ...+++-|. +.|.+++|..-|-+.-+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 1 2356667788888777777777888765422 234444 335566663 45778887655444444
Q ss_pred hcCCCCCh-----HHHHHHHHHHHhcCC----HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc
Q 045672 401 FYGIDPGR-----EHYSCMIDLLGRAGK----LQEAVKLIHEMPY--EPDAVTWRALLGACKVH 453 (643)
Q Consensus 401 ~~~~~p~~-----~~~~~li~~~~~~g~----~~~A~~~~~~m~~--~p~~~~~~~ll~~~~~~ 453 (643)
.|.-.-++ --|..|..++.+.|- -++|. |. .|.......|+.+|..+
T Consensus 260 NYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK------PyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 260 NYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK------PYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred cccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC------CCCCCHHHHHHHHHHHHHhcc
Confidence 33322222 235566677776652 11221 33 35566778888888654
No 310
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.35 E-value=1.5 Score=24.82 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=18.7
Q ss_pred chHHHHHHHHHccCChhHHHHHHH
Q 045672 475 GTYILLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 475 ~~~~~l~~~~~~~g~~~~a~~~~~ 498 (643)
.+...++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456678888888888888888765
No 311
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.19 E-value=7.7 Score=30.24 Aligned_cols=62 Identities=8% Similarity=0.076 Sum_probs=48.1
Q ss_pred CcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH-HcCCCCchhHHHHHHH
Q 045672 54 DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL-SGGFEPETFLVNILLN 117 (643)
Q Consensus 54 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~ 117 (643)
+..++.+-++.+...+.-|++....+.|++|.+.+++..|.++++-+. +.|. +...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 455677777888888889999999999999999999999999999877 3332 3445655553
No 312
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=82.85 E-value=64 Score=33.60 Aligned_cols=89 Identities=10% Similarity=-0.014 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHcc
Q 045672 412 SCMIDLLGRAGKLQEAVKLIHEMP-Y-EPDAVTWRALLGAC--KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487 (643)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 487 (643)
+.+++-+.+.|-..+|...+..+. . .|+...+.-++..- ...-+..-+..+|+.+....-.++..|......-...
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~ 543 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPL 543 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccC
Confidence 456666666777777777766652 1 23555565555331 2222355566666666654335555666555555566
Q ss_pred CChhHHHHHHHHH
Q 045672 488 QKWDEVAEVRKTM 500 (643)
Q Consensus 488 g~~~~a~~~~~~m 500 (643)
|..+.+-.++.+.
T Consensus 544 g~~en~~~~~~ra 556 (568)
T KOG2396|consen 544 GRPENCGQIYWRA 556 (568)
T ss_pred CCcccccHHHHHH
Confidence 6666655555443
No 313
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.75 E-value=21 Score=36.55 Aligned_cols=88 Identities=15% Similarity=0.111 Sum_probs=48.4
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHH
Q 045672 417 LLGRAGKLQEAVKLIHEMP--YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 494 (643)
.....|+++.+...+.... +.....+...++......|+.++|....+.++.-+-+++.....-+..-...|-++++.
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 3445566666666555441 12233455555666666666666666666666555444444443334444556666777
Q ss_pred HHHHHHHhCC
Q 045672 495 EVRKTMRARG 504 (643)
Q Consensus 495 ~~~~~m~~~g 504 (643)
..|+++..-+
T Consensus 412 ~~wk~~~~~~ 421 (831)
T PRK15180 412 HYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccC
Confidence 7776665433
No 314
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.50 E-value=1.8 Score=26.41 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=13.5
Q ss_pred cCCchhHHhHHHHHHHhcCCHHHHH
Q 045672 302 YDHDLILNNALLDMYCKCGSLEDAM 326 (643)
Q Consensus 302 ~~~~~~~~~~Li~~y~~~g~~~~A~ 326 (643)
.+.+...|+.|...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444455555555555555555553
No 315
>PRK12798 chemotaxis protein; Reviewed
Probab=82.46 E-value=61 Score=33.06 Aligned_cols=181 Identities=16% Similarity=0.220 Sum_probs=118.3
Q ss_pred cCCHHHHHHHHhhcCCC----ChhhHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHH
Q 045672 319 CGSLEDAMSVFSRMIQK----DVISWSTMISGL-AQNGYSQEALKLFESMKVSRIKPN----YITIVGVLFACSHAGFVE 389 (643)
Q Consensus 319 ~g~~~~A~~~~~~m~~~----~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~ 389 (643)
.|+.++|.+.|..+... ....|-+|+.+- ....++.+|+++|+...- ..|- +..+.--+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 68999999999888543 445677777654 446689999999998765 2454 334444455668899999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHH-HHHHHHHhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045672 390 DGWNHFKSMKKFYGIDPGREHYS-CMIDLLGRA---GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465 (643)
Q Consensus 390 ~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~---g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 465 (643)
++..+-....++|...|=...|. .++..+.+. -..+.-.+++..|.-.--...|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99888777777666666433332 233333333 33455556666664222345788888888999999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHH-----ccCChhHHHHHHHHHHh
Q 045672 466 ILNLDPQDPGTYILLSNIYA-----NSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 466 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~~ 502 (643)
+..+...+ ..-...+..|. -..+.+++.+.+..+-.
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 99876432 23344444553 23456666666655543
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.44 E-value=2.3 Score=27.04 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=22.7
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 475 GTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 475 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678889999999999999999888764
No 317
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.86 E-value=7.9 Score=30.54 Aligned_cols=63 Identities=6% Similarity=0.037 Sum_probs=43.0
Q ss_pred CcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045672 54 DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117 (643)
Q Consensus 54 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (643)
+..+..+-++.+...++-|++....+.|++|.+.+++..|.++++.+...- .+....|..++.
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 344677777777778888999999999999999999999999998887542 223336665554
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.34 E-value=0.88 Score=39.20 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=66.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhH
Q 045672 79 ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158 (643)
Q Consensus 79 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 158 (643)
.+++.+.+.+.++.....++.+.+.+...+....+.++..|++.++.+...++++.... .....++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666777788888889999999877667789999999999999988999998884443 444567777888888888
Q ss_pred HHHHHHHHH
Q 045672 159 ALELLIFML 167 (643)
Q Consensus 159 A~~~~~~m~ 167 (643)
|.-++.++-
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 888877754
No 319
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=80.68 E-value=66 Score=32.33 Aligned_cols=189 Identities=16% Similarity=0.230 Sum_probs=113.6
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHH--HHHHHHCCCCCCHHHHHHHHHHHhc
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL--FESMKVSRIKPNYITIVGVLFACSH 384 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l--~~~m~~~g~~p~~~t~~~ll~a~~~ 384 (643)
.+...+++.+...++|+.--+.. ....-++|+...|+.- .+-|.--.-.||..|-..++..+-.
T Consensus 53 kv~~~i~~lc~~~~~w~~Lne~i--------------~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~tLr~ 118 (439)
T KOG1498|consen 53 KVLEEIMKLCFSAKDWDLLNEQI--------------RLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIETLRT 118 (439)
T ss_pred HHHHHHHHHHhccccHHHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH
Confidence 34455666666666665443321 2223456777776652 2333333335666666666554321
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHH
Q 045672 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL------------LGACKV 452 (643)
Q Consensus 385 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------l~~~~~ 452 (643)
+.++ ++|-+..+ ...-..|...+-.+|++++|..++.+.+++ ||+++ +..|..
T Consensus 119 ---Vteg-kIyvEvER-------arlTk~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~ 183 (439)
T KOG1498|consen 119 ---VTEG-KIYVEVER-------ARLTKMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLL 183 (439)
T ss_pred ---hhcC-ceEEeehH-------HHHHHHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHH
Confidence 1111 11111111 223345677888999999999999887532 33332 366888
Q ss_pred cCCHHHHHHHHHHHHhcC---CC----CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCcCCceeEEEECCEEEEEE
Q 045672 453 HRNTDLAICAAKKILNLD---PQ----DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFN 524 (643)
Q Consensus 453 ~g~~~~a~~~~~~~~~~~---p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~ 524 (643)
.+|+-.|.-+.+++.... |+ ....|..++.+..+.+.+=++-+.++..-+.|..+....-|+.+-..+-.|+
T Consensus 184 ~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~ 262 (439)
T KOG1498|consen 184 RLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFC 262 (439)
T ss_pred hhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEE
Confidence 999999998888886532 22 1236888899999999999999999999887766554344665443443444
No 320
>PHA02875 ankyrin repeat protein; Provisional
Probab=80.38 E-value=75 Score=33.00 Aligned_cols=149 Identities=10% Similarity=-0.021 Sum_probs=64.8
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCCC----cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHhcCC
Q 045672 214 IDIYAKLGELRNAECVFNEMPTRD----LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL--TSVLRACTGLA 287 (643)
Q Consensus 214 i~~y~~~g~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~a~~~~~ 287 (643)
+...+..|+.+.+..+++.-...+ ..-++. +...+..|+. ++++.+.+.|..|+.... .+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 444456677776666665433211 111222 2223344554 344444555655543211 12233333455
Q ss_pred hhHhHHHHHHHHhhc-CCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHH
Q 045672 288 LLELGTQVHVHVLKY-DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI---SWSTMISGLAQNGYSQEALKLFESM 363 (643)
Q Consensus 288 ~~~~a~~i~~~~~~~-~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m 363 (643)
+.+..+.+.+.-... ..+. ...+.+...+..|+.+-+..+++.-..++.. ...+.+...+..|+.+ +.+-+
T Consensus 147 ~~~~v~~Ll~~g~~~~~~d~-~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~L 221 (413)
T PHA02875 147 DIKGIELLIDHKACLDIEDC-CGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLF 221 (413)
T ss_pred CHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHH
Confidence 555544444332221 1111 1223334445567777666666544333322 1123343334555543 44444
Q ss_pred HHCCCCCCH
Q 045672 364 KVSRIKPNY 372 (643)
Q Consensus 364 ~~~g~~p~~ 372 (643)
.+.|..|+.
T Consensus 222 l~~gad~n~ 230 (413)
T PHA02875 222 IKRGADCNI 230 (413)
T ss_pred HHCCcCcch
Confidence 556666653
No 321
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=80.36 E-value=60 Score=31.61 Aligned_cols=61 Identities=10% Similarity=-0.101 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 045672 339 SWSTMISGLAQNGYSQ---EALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKF 401 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 401 (643)
+...++.+|...+..+ +|..+++.+... -|+ ...+..-+..+.+.++.+++.+.+..|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4455566666655433 445555555433 233 333434455555566777777777777663
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.83 E-value=34 Score=29.38 Aligned_cols=34 Identities=9% Similarity=0.238 Sum_probs=19.2
Q ss_pred HHhcCCHHHHHHHHhhcCCCCh-hhHHHHHHHHHh
Q 045672 316 YCKCGSLEDAMSVFSRMIQKDV-ISWSTMISGLAQ 349 (643)
Q Consensus 316 y~~~g~~~~A~~~~~~m~~~~~-~~~~~li~~~~~ 349 (643)
+...|++++|.++|+++.+... ..|..-+.++|-
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 4566777777777777755432 244444444443
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.71 E-value=29 Score=36.84 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=23.3
Q ss_pred hcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045672 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 364 (643)
+.|+++.|.++-.+. .+..-|..|..+..+.|++..|.+.|.+..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 445555555443322 234456666666666666666666555543
No 324
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.18 E-value=4 Score=24.53 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=25.3
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 475 GTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 475 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998765
No 325
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.08 E-value=5.3 Score=27.43 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=24.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 045672 446 LLGACKVHRNTDLAICAAKKILNLDPQDPG 475 (643)
Q Consensus 446 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 475 (643)
+.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 445688999999999999999999998863
No 326
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.96 E-value=57 Score=30.58 Aligned_cols=201 Identities=13% Similarity=0.121 Sum_probs=105.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCC
Q 045672 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGS 321 (643)
Q Consensus 242 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~ 321 (643)
.--..+|-...++++|...+.+..+. ...|...| ... ...+.+..+.+.+.+++.-+..++--..+|..+|.
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-hAA------KayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs 106 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-HAA------KAYEQAAMLAKELSKLSEVVDLYEKASELYVECGS 106 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-HHH------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC
Confidence 33444555566666666655554421 11121111 111 22334444444444444445566777888999999
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHhccCCHHHHHHHHH
Q 045672 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI--KPNY---ITIVGVLFACSHAGFVEDGWNHFK 396 (643)
Q Consensus 322 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~---~t~~~ll~a~~~~g~~~~a~~~~~ 396 (643)
++.|-..+++.-+ ...+-++++|+++|++...-=. .-+. ..+..+-..+.+...+++|-..|.
T Consensus 107 pdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 107 PDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred cchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 8888777665421 2334566777777766532100 1111 122223334455556666554443
Q ss_pred HhHH---hcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHhC---C-C-C-CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045672 397 SMKK---FYGIDPGR-EHYSCMIDLLGRAGKLQEAVKLIHEM---P-Y-E-PDAVTWRALLGACKVHRNTDLAICAA 463 (643)
Q Consensus 397 ~~~~---~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m---~-~-~-p~~~~~~~ll~~~~~~g~~~~a~~~~ 463 (643)
+-.. ...--++. ..|-+.|-.|.-..++..|...++.- | + . .|..+...|+.+| ..|+.+++..++
T Consensus 175 Ke~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 175 KEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3211 00111222 23555666677778999999999884 2 1 1 2566788888876 467777766554
No 327
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.87 E-value=3.9 Score=24.23 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=13.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 448 GACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
.++...|+.++|...++++++..|+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3344455555555555555555553
No 328
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.86 E-value=12 Score=25.66 Aligned_cols=51 Identities=10% Similarity=0.060 Sum_probs=35.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCc
Q 045672 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGY 552 (643)
Q Consensus 476 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~g~ 552 (643)
.+..++-++.+.|++++|++..+.+.+. + |...++......+.++|.+.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~----e----------------------P~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI----E----------------------PDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH----T----------------------TS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh----C----------------------CCcHHHHHHHHHHHHHHhccCC
Confidence 3567888999999999999999999862 2 3444555555666777777763
No 329
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.29 E-value=25 Score=29.51 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHh-cCCC-CcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 455 NTDLAICAAKKILN-LDPQ-DPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 455 ~~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+..+++.+++.+.+ ..|. .-.....|+-.+.+.|+++.++++.+...+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 45566677777765 3333 223444566667777777777777776665
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.05 E-value=2.8 Score=24.91 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=24.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 476 TYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 476 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678899999999999999999998864
No 331
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.01 E-value=5.1 Score=22.86 Aligned_cols=30 Identities=30% Similarity=0.201 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 443 WRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 443 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
|..+...+...|+++.|...+++.++..|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 444555566666677777766666666553
No 332
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.99 E-value=5.5 Score=25.18 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMK 364 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~ 364 (643)
.+++.+...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 355666667777777777777776654
No 333
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.84 E-value=12 Score=33.27 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCC----hhHHHHHHHHHH
Q 045672 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQK----WDEVAEVRKTMR 501 (643)
Q Consensus 456 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~ 501 (643)
+++|+.-|++++.++|+...++..++++|...+. ..+|.++|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4667888888899999999999999999977653 334445554443
No 334
>PRK10941 hypothetical protein; Provisional
Probab=77.78 E-value=12 Score=36.16 Aligned_cols=61 Identities=21% Similarity=0.193 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 443 WRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 443 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
.+.+-.++.+.++++.|+++.+.++.+.|+++.-+.--+-+|.+.|.+..|..=++.-.+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4566677999999999999999999999999988888999999999999999988877764
No 335
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.53 E-value=40 Score=35.82 Aligned_cols=147 Identities=16% Similarity=0.070 Sum_probs=95.0
Q ss_pred hcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHH
Q 045672 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI-TIVGVLFACSHAGFVEDGWNHFK 396 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 396 (643)
-.|+++.|..++..++++ .-+.++.-+..+|-.++|+++ .||.. -|.. ..+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHH
Confidence 457777777776666532 334455556667777777654 33322 2222 236688888877654
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 045672 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476 (643)
Q Consensus 397 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 476 (643)
+. .+..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+.+.-..+.....+.+..|. +
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-A 727 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-A 727 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch-H
Confidence 43 345668888888888999988888887763 255666666677777766666666655555543 2
Q ss_pred HHHHHHHHHccCChhHHHHHHH
Q 045672 477 YILLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 477 ~~~l~~~~~~~g~~~~a~~~~~ 498 (643)
-.+|...|+++++.+++.
T Consensus 728 ----F~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 728 ----FLAYFLSGDYEECLELLI 745 (794)
T ss_pred ----HHHHHHcCCHHHHHHHHH
Confidence 245677899999888774
No 336
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.07 E-value=28 Score=31.61 Aligned_cols=73 Identities=11% Similarity=0.006 Sum_probs=46.7
Q ss_pred cchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCchhHHHHHHHHHHcCCChhHH
Q 045672 55 LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSG---GFEPETFLVNILLNMHVKFSLLEEA 128 (643)
Q Consensus 55 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~A 128 (643)
-++|++.|-.+...+.--++.....|...|. ..+.+++++++-..++. +-.+|+.++.+|++.|-+.|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4567777777766654445554444544444 46677777777777663 2245677777777777777777766
No 337
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=77.01 E-value=8.7 Score=37.43 Aligned_cols=86 Identities=14% Similarity=0.099 Sum_probs=59.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 045672 344 ISGLAQNGYSQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422 (643)
Q Consensus 344 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 422 (643)
..-|.++|.+++|++.|..-.. +.| |.+++..-..+|.+...+..|..=...... .-...+.+|.|.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 4569999999999999998776 467 899999999999999888877665555443 1123455666554
Q ss_pred -------CHHHHHHHHHhC-CCCCCH
Q 045672 423 -------KLQEAVKLIHEM-PYEPDA 440 (643)
Q Consensus 423 -------~~~~A~~~~~~m-~~~p~~ 440 (643)
...||.+-++.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 445554444433 455663
No 338
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.99 E-value=9.8 Score=36.32 Aligned_cols=60 Identities=15% Similarity=-0.001 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 443 WRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 443 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
++.....|...|.+.+|.++.++++.++|-+...+-.|...++..|+--.|.+-++.+.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344456789999999999999999999999999999999999999998888888887753
No 339
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.59 E-value=1.2e+02 Score=32.95 Aligned_cols=153 Identities=14% Similarity=0.083 Sum_probs=82.5
Q ss_pred HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccC-----CHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 045672 347 LAQNGYSQEALKLFESMKV-------SRIKPNYITIVGVLFACSHAG-----FVEDGWNHFKSMKKFYGIDPGREHYSCM 414 (643)
Q Consensus 347 ~~~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l 414 (643)
+....+.+.|+..|+.+.. .| +......+..+|.+.. +.+.|..++....+. | .|+....-..
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~ 333 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGV 333 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHHHHH
Confidence 3345567777777766655 44 2223444555555432 556677777766652 3 2333322222
Q ss_pred HHHHHh-cCCHHHHHHHHHhCCCC--CCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHcc-C
Q 045672 415 IDLLGR-AGKLQEAVKLIHEMPYE--PDAVTWRALLGAC--KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS-Q 488 (643)
Q Consensus 415 i~~~~~-~g~~~~A~~~~~~m~~~--p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g 488 (643)
+...+. ..+...|.++|...... ++...+.++.-.. ....+.+.|...+.++-+.++. .+...+...+... +
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~--~A~~~~~~~~~~g~~ 411 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNP--SAAYLLGAFYEYGVG 411 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccCh--hhHHHHHHHHHHccc
Confidence 222222 23466777777776322 2222232222211 1344788888888888887732 3344444443222 8
Q ss_pred ChhHHHHHHHHHHhCCCC
Q 045672 489 KWDEVAEVRKTMRARGIT 506 (643)
Q Consensus 489 ~~~~a~~~~~~m~~~g~~ 506 (643)
+++.+.-.+..+.+.|.+
T Consensus 412 ~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYE 429 (552)
T ss_pred cccHHHHHHHHHHHhhhh
Confidence 888888888888777654
No 340
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.42 E-value=10 Score=36.52 Aligned_cols=96 Identities=16% Similarity=0.227 Sum_probs=66.4
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCC---------CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 045672 202 GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR---------DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272 (643)
Q Consensus 202 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 272 (643)
|......+...++..-....+++++...+-++... ..++|--++ -.-++++++.++..=.+-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 44444555555666666677788888777666541 122332222 23467899998888888899999
Q ss_pred HHHHHHHHHHHhcCChhHhHHHHHHHHhh
Q 045672 273 QSTLTSVLRACTGLALLELGTQVHVHVLK 301 (643)
Q Consensus 273 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 301 (643)
.+|+..+++.+.+.++...|.++...++.
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99998888888888888777777666655
No 341
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.71 E-value=15 Score=35.56 Aligned_cols=94 Identities=14% Similarity=0.065 Sum_probs=49.4
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCC-CCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQ-KDV-----ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL 379 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 379 (643)
..+...++..-....+++++...+-++.. ++. .+-.+.+..+ -.-++++++.++..=++.|+-||..|+..++
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLM 142 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhhHHHHH
Confidence 33444455555555666666665555432 111 0111112222 2234556666666666666666666666666
Q ss_pred HHHhccCCHHHHHHHHHHhHH
Q 045672 380 FACSHAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 380 ~a~~~~g~~~~a~~~~~~~~~ 400 (643)
..+.+.+++.+|.++.-.|..
T Consensus 143 D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 666666666666665555544
No 342
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.61 E-value=26 Score=35.94 Aligned_cols=109 Identities=21% Similarity=0.339 Sum_probs=52.2
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-
Q 045672 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE- 437 (643)
Q Consensus 360 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~- 437 (643)
+..+....-.|+.+.+.+.+ ..+.|+++.+...+....+ -+.....+..+++....+.|++++|..+-..| +.+
T Consensus 313 ~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei 388 (831)
T PRK15180 313 FAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEI 388 (831)
T ss_pred HHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcccc
Confidence 33333333344444443333 3455666666655555443 23334445556666666666666666655554 100
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 438 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
.+..............|-++++...+++++.+.|+
T Consensus 389 e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 389 EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred CChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 12222222222334455566666666666655543
No 343
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.44 E-value=67 Score=29.04 Aligned_cols=113 Identities=13% Similarity=0.038 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHHhcCCHHHH
Q 045672 355 EALKLFESMKVSRIKPNYITIV--GVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS-----CMIDLLGRAGKLQEA 427 (643)
Q Consensus 355 ~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A 427 (643)
+......++....-+...-++. .+...+...+++++|...++..... |.-..+. .|.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5555556665543222222332 2345667788888888877766541 3223333 344567778889999
Q ss_pred HHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 428 VKLIHEMPYEPDAVT--WRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 428 ~~~~~~m~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
+..++...- ++-.. ...-.+.+...|+-++|...|++.++.+++
T Consensus 146 L~~L~t~~~-~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKE-ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhcccc-ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 888876531 21111 122225578888888999888888887754
No 344
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=74.14 E-value=43 Score=33.99 Aligned_cols=96 Identities=20% Similarity=0.294 Sum_probs=67.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC----------CC-----------------CC-CHHHHHHH---HHHHHHcCC
Q 045672 407 GREHYSCMIDLLGRAGKLQEAVKLIHEM----------PY-----------------EP-DAVTWRAL---LGACKVHRN 455 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~-----------------~p-~~~~~~~l---l~~~~~~g~ 455 (643)
.+.++-.+.+.+.+.|+.+.|.+++++. .+ .+ |...|.++ +....+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 3445555566666667666666655543 01 11 44445544 456788999
Q ss_pred HHHHHHHHHHHHhcCCC-CcchHHHHHHHHH-ccCChhHHHHHHHHHHh
Q 045672 456 TDLAICAAKKILNLDPQ-DPGTYILLSNIYA-NSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 456 ~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 502 (643)
+..|.+..+-++.++|. ||..-...++.|+ ++++++--.++.+....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 99999999999999999 8888888888885 77888878887776654
No 345
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.16 E-value=55 Score=30.68 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=63.7
Q ss_pred HHHHhcCCHHHHHHHHHhC---------CCCCCHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 045672 416 DLLGRAGKLQEAVKLIHEM---------PYEPDAVTWR-----------ALLGACKVHRNTDLAICAAKKILNLDPQDPG 475 (643)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m---------~~~p~~~~~~-----------~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 475 (643)
+-+.+.|++.||..-|.++ .-+|-..-|- .+-.++...|++-++++.-.+++...|.|..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 3455667777766655443 2344433332 2334556789999999999999999999999
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 476 TYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 476 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+|..-+.+.+..=+.++|..=|....+
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 999999988888888888888887775
No 346
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.11 E-value=15 Score=33.55 Aligned_cols=63 Identities=25% Similarity=0.231 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 411 YSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
.+..+..+.+.+.+++|+.+.++- +.+| |...-..++..++..|++++|..-++-+-++.|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 344566777888888888776543 4455 44566677788888899888888888888888864
No 347
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.59 E-value=53 Score=29.76 Aligned_cols=60 Identities=20% Similarity=0.152 Sum_probs=36.8
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 415 IDLLGRAGKLQEAVKLIHEM-PYEPDAV-TWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
..++.+.+.++.|++-..+. .+.|... ....-..+|.+...++.|+.-|.++++.+|...
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 34455566666665544443 3334221 222223457777889999999999999999754
No 348
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.20 E-value=6.6 Score=25.70 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=22.9
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 478 ILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 478 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
..|+.+|...|+.+.|++++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357899999999999999999988644
No 349
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=70.70 E-value=1.3e+02 Score=30.86 Aligned_cols=71 Identities=17% Similarity=0.203 Sum_probs=53.3
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 045672 310 NALLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384 (643)
Q Consensus 310 ~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 384 (643)
..|+.-|...|++.+|.+..+++.-| ..+.+.+++.+.-+.|+-...+.++++.-.+|+ +|-+.+-.+|.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 45778888899999999999887554 456788889999999988888888888776663 344455555543
No 350
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.92 E-value=53 Score=25.98 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=44.7
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045672 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378 (643)
Q Consensus 315 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 378 (643)
.+...|++++|..+.+.+.-||...|-++-. .+.|..+++..-+.+|..+| .|...+|..-
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faag 108 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVAG 108 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 3457888999998888888888888877654 35677777777777787776 5666666543
No 351
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=69.17 E-value=15 Score=28.61 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
...+++.++.+|+|...-..++..+...|++++|.+.+-.+..+.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 445667777889888888899999999999999988888887653
No 352
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.73 E-value=1.8e+02 Score=31.65 Aligned_cols=247 Identities=10% Similarity=0.078 Sum_probs=115.7
Q ss_pred HHhCCChhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHhcCC-----hhHhHHHHHHHHhh-cCCchhHHhHHHH
Q 045672 248 FAQNSDVDEALNLYKRMKR-------AGFAADQSTLTSVLRACTGLA-----LLELGTQVHVHVLK-YDHDLILNNALLD 314 (643)
Q Consensus 248 ~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~a~~~~~-----~~~~a~~i~~~~~~-~~~~~~~~~~Li~ 314 (643)
+....+.+.|+.+|+...+ .| +......+..+|.+.. +.+.|..++..+.+ -.|+....-..+.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLY 335 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 3445667777777776655 33 2223333444444322 34445555555555 3333322222222
Q ss_pred HHHh-cCCHHHHHHHHhhcCCC-ChhhHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 045672 315 MYCK-CGSLEDAMSVFSRMIQK-DVISWSTMISGLA----QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388 (643)
Q Consensus 315 ~y~~-~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 388 (643)
.... ..+...|.++|....+. .+.+.-.+...|. ...+...|..++.+..+.| .|-..--...+..+.. +..
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccc
Confidence 2222 24566777777666432 2222222222222 2235667777777777766 3332322333334444 555
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHH-----Hh--cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHH
Q 045672 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLL-----GR--AGKLQEAVKLIHEMPYEPDAVTWRALLGACKV----HRNTD 457 (643)
Q Consensus 389 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~-----~~--~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~ 457 (643)
+.+.-.+..+.+ .+.+-....-..+.+.. .+ ..+.+.+...+.+...+-+......+-..|.. ..+++
T Consensus 414 ~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~ 492 (552)
T KOG1550|consen 414 DTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPE 492 (552)
T ss_pred cHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChH
Confidence 555544444443 23221111111111111 00 12344555555555433344444444433322 23567
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHcc-C--ChhHHHHHHHHHHhC
Q 045672 458 LAICAAKKILNLDPQDPGTYILLSNIYANS-Q--KWDEVAEVRKTMRAR 503 (643)
Q Consensus 458 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~m~~~ 503 (643)
.|...+.++.+.. ......++.++... | .+..|.+++++..+.
T Consensus 493 ~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 493 KAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 7777777766655 45666666666432 1 257777777776653
No 353
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=67.62 E-value=22 Score=31.52 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCc
Q 045672 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507 (643)
Q Consensus 456 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 507 (643)
+++|...|+++.+.+|+|. .|..-+.+.. +|-++..++.+.+...
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~~------kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMAA------KAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHHH------THHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHHH------hhHHHHHHHHHHHhhh
Confidence 6778888888889999875 6665555553 5777787777776543
No 354
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=67.51 E-value=3.5e+02 Score=34.49 Aligned_cols=276 Identities=13% Similarity=0.128 Sum_probs=146.4
Q ss_pred HHHHHHHcCCHHHHHHHHhh-CCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHh
Q 045672 213 LIDIYAKLGELRNAECVFNE-MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291 (643)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 291 (643)
+...|+..+++|...-+... ..+++ ...-|.-....|++..|...|+++.+.+ ++...+++.++......+.++.
T Consensus 1426 lq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t 1501 (2382)
T KOG0890|consen 1426 LQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLST 1501 (2382)
T ss_pred HHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhH
Confidence 44477777777776666552 33322 2234455566788888888888887753 2335667666666666666665
Q ss_pred HHHHHHHHhh-cCCchhHHhHH-HHHHHhcCCHHHHHHHHhhcCCCChhhHHHH-H-HHHHhcC--CHHHHHHHHHHHHH
Q 045672 292 GTQVHVHVLK-YDHDLILNNAL-LDMYCKCGSLEDAMSVFSRMIQKDVISWSTM-I-SGLAQNG--YSQEALKLFESMKV 365 (643)
Q Consensus 292 a~~i~~~~~~-~~~~~~~~~~L-i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l-i-~~~~~~g--~~~~A~~l~~~m~~ 365 (643)
.....+.... ..+...-++++ +.+--+.++++.-..... ..+..+|.+. + ..+.+.. +.-.-.++.+.+.+
T Consensus 1502 ~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~ 1578 (2382)
T KOG0890|consen 1502 EILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRE 1578 (2382)
T ss_pred HHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHH
Confidence 5554444433 33333333332 344466777776666655 5566666655 2 2222221 11111123333322
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH----------hHHhcCCCCChHH------HHHH---HHHHHhcCCHHH
Q 045672 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKS----------MKKFYGIDPGREH------YSCM---IDLLGRAGKLQE 426 (643)
Q Consensus 366 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~----------~~~~~~~~p~~~~------~~~l---i~~~~~~g~~~~ 426 (643)
.-+. =+.+|+..|.+..+.++.-+ .....++.++..+ |..- +.-+.+....--
T Consensus 1579 ~~i~--------~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epIL 1650 (2382)
T KOG0890|consen 1579 LVIE--------NLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPIL 1650 (2382)
T ss_pred Hhhh--------hHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHH
Confidence 1111 12233333332222222111 1111233333221 1111 112222111111
Q ss_pred HHH-HHHhCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHH
Q 045672 427 AVK-LIHEMPYEP-----DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTM 500 (643)
Q Consensus 427 A~~-~~~~m~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 500 (643)
|.+ .+.....+| -...|......++..|.++.|....-.+.+..+ +..+.-.+......|+...|..++++-
T Consensus 1651 a~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~ 1728 (2382)
T KOG0890|consen 1651 AFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEI 1728 (2382)
T ss_pred HHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 111 111111122 234788888999999999999999888888775 468999999999999999999999998
Q ss_pred HhCCC
Q 045672 501 RARGI 505 (643)
Q Consensus 501 ~~~g~ 505 (643)
.+...
T Consensus 1729 l~~~~ 1733 (2382)
T KOG0890|consen 1729 LSKNF 1733 (2382)
T ss_pred HHhhc
Confidence 87654
No 355
>PRK13342 recombination factor protein RarA; Reviewed
Probab=64.90 E-value=1.2e+02 Score=31.50 Aligned_cols=111 Identities=18% Similarity=0.121 Sum_probs=60.2
Q ss_pred chHHHHHHHHHh---CCC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 045672 56 PRAMKAMHAMQC---HGV-RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVL 131 (643)
Q Consensus 56 ~~A~~~~~~m~~---~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 131 (643)
++...+++.... .|+ ..+......++..+ .|+...+..+++.+...+...+ .+....+
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHH
Confidence 344455554432 133 44555555554433 5777777777776654321111 1222222
Q ss_pred HccC---CCCCcchHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 045672 132 FDQM---PERNVVSWTTMISAYCD---AKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184 (643)
Q Consensus 132 f~~m---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 184 (643)
+... ..++......+++++.+ .++++.|+..+.+|.+.|..|....-..+..+
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2221 11233345556666665 47899999999999999988775544444444
No 356
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.90 E-value=65 Score=27.61 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=40.3
Q ss_pred CCcchHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCChhhHHHHHHHHhch
Q 045672 138 RNVVSWTTMISAYCDAKM-NDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188 (643)
Q Consensus 138 ~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 188 (643)
.+-.+|+.++.+.++... ---+..+|.-|.+.+.+++..-|..++++|.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 456788999998876665 345678888898888899999999999887654
No 357
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=64.90 E-value=2.5e+02 Score=31.82 Aligned_cols=193 Identities=14% Similarity=0.114 Sum_probs=109.5
Q ss_pred HhcCCHHHHHHHHhhc----CCCCh-------hhHHHHHHH-HHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHH
Q 045672 317 CKCGSLEDAMSVFSRM----IQKDV-------ISWSTMISG-LAQNGYSQEALKLFESMKVSR----IKPNYITIVGVLF 380 (643)
Q Consensus 317 ~~~g~~~~A~~~~~~m----~~~~~-------~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~ 380 (643)
....++++|..+..+. ..++. ..|+++-.. ....|++++|+++-+.....= ..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3467888888877765 23222 256666443 345788999999888776531 2234455556666
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH-----HHHHhcCCHHHH--HHHHHhC-----CCCC----CHHHHH
Q 045672 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI-----DLLGRAGKLQEA--VKLIHEM-----PYEP----DAVTWR 444 (643)
Q Consensus 381 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-----~~~~~~g~~~~A--~~~~~~m-----~~~p----~~~~~~ 444 (643)
+..-.|++++|..+.....+. .-.-+..++..++ ..+..+|....| ...|... +.+| -..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777789999998887766552 2233444333332 335566733332 2223222 1122 122333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC----CCCcc---hHHHHHHHHHccCChhHHHHHHHHHHhCCCCcCCceeE
Q 045672 445 ALLGACKVHRNTDLAICAAKKILNLD----PQDPG---TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSW 513 (643)
Q Consensus 445 ~ll~~~~~~g~~~~a~~~~~~~~~~~----p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 513 (643)
.++.++.+ .+.+..-....++.. |.... .+..|+.++...|+.++|....+.+..-.....+...|
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 44444333 555555555554432 33211 22378889999999999999999988655444344444
No 358
>PRK11619 lytic murein transglycosylase; Provisional
Probab=64.52 E-value=2.3e+02 Score=31.42 Aligned_cols=438 Identities=12% Similarity=0.014 Sum_probs=201.6
Q ss_pred HHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHcCCChhH
Q 045672 49 FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGG-FEPETFLVNILLNMHVKFSLLEE 127 (643)
Q Consensus 49 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~ 127 (643)
..+.|++.++..+...+....+ ..-..|..+..... ....++ +-..+.+.. .+.....-..-+..+.+.+++..
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~e---v~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQ---VTNFIRANPTLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHH---HHHHHHHCCCCchHHHHHHHHHHHHHHccCHHH
Confidence 3467788888777776643221 12222333333221 123333 333333322 12223344455556677889998
Q ss_pred HHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH--HHHHHHHHhCCCC
Q 045672 128 AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR--QLHCGIIKVGFES 205 (643)
Q Consensus 128 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~--~~~~~~~~~g~~~ 205 (643)
..+.+..- ..+...--....+....|+.++|.+....+-..| .........+++.+.+.|.+. .+...+...-...
T Consensus 118 ~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~ 195 (644)
T PRK11619 118 LLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG 195 (644)
T ss_pred HHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence 88844333 3455555667778888999888888888876655 334556777777765443332 2222221111111
Q ss_pred chh---------------HHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHH--hCCChhHHHHHHHHHHHcC
Q 045672 206 DVF---------------VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFA--QNSDVDEALNLYKRMKRAG 268 (643)
Q Consensus 206 ~~~---------------~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g 268 (643)
+.. ....++..+. +...+..++.... ++...-...+.++. ...+.+.|..++.......
T Consensus 196 ~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~ 271 (644)
T PRK11619 196 NTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQ 271 (644)
T ss_pred CHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhc
Confidence 111 1112222221 1222222222211 11111111111111 2344566777776654332
Q ss_pred -CCCCHH--HHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC--ChhhHHH-
Q 045672 269 -FAADQS--TLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK--DVISWST- 342 (643)
Q Consensus 269 -~~p~~~--t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~- 342 (643)
..+... ....+....+..+....+...+........+..+...-+..-.+.++++.+...+..|... +...|.-
T Consensus 272 ~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW 351 (644)
T PRK11619 272 KLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYW 351 (644)
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHH
Confidence 222211 1112211112221133333333333322123333334444445677777777777776431 1112221
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH-HHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a-~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 421 (643)
+..++...|+.++|...|++... .. +|-.++.+ .+.|..-.- ......-.....-.| -..-+..+...
T Consensus 352 ~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~~~~~~~~~~~~~~~~~~----~~~ra~~L~~~ 420 (644)
T PRK11619 352 QADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYPLKIDKAPKPDSALTQGP----EMARVRELMYW 420 (644)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCCCCCCCCCchhhhhccCh----HHHHHHHHHHC
Confidence 34454556777777777777632 11 24333322 112211000 000000000000001 11224556677
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCcchHHHHHHHHHccCChhHHHHHHH
Q 045672 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD---PQDPGTYILLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 422 g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 498 (643)
|+..+|...+..+-...+......+.......|..+.++....+....+ -.-|..|......+++.-.++.+.-.--
T Consensus 421 g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai 500 (644)
T PRK11619 421 NMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAI 500 (644)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHH
Confidence 8888888877766323455555666666778888888887776543321 0123356666777776666776664333
Q ss_pred HHHhCCCCcC
Q 045672 499 TMRARGITKE 508 (643)
Q Consensus 499 ~m~~~g~~~~ 508 (643)
-..|.+..+.
T Consensus 501 ~rqES~f~p~ 510 (644)
T PRK11619 501 ARQESAWNPK 510 (644)
T ss_pred HHHhcCCCCC
Confidence 3346666544
No 359
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=64.45 E-value=1.5e+02 Score=29.16 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----CHHHHHHHHHHhHHhcCC
Q 045672 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSH--AG----FVEDGWNHFKSMKKFYGI 404 (643)
Q Consensus 353 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~g----~~~~a~~~~~~~~~~~~~ 404 (643)
+++.+.+++.|.+.|++-+..++.+....... .. ....+..+|+.|++.+.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f 135 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF 135 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc
Confidence 34566788899999998888777664333322 22 345688899999886544
No 360
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.37 E-value=1.3e+02 Score=30.85 Aligned_cols=54 Identities=7% Similarity=-0.078 Sum_probs=36.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH--hccCCHHHHHHHHHHhHH
Q 045672 346 GLAQNGYSQEALKLFESMKVSRIKPNYI--TIVGVLFAC--SHAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 346 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~--~~~g~~~~a~~~~~~~~~ 400 (643)
.+.+.+++..|.++|+++... ++++.. .+..+..+| -..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344778889999999988876 555544 333444444 345677888888887766
No 361
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.11 E-value=53 Score=31.47 Aligned_cols=83 Identities=10% Similarity=-0.032 Sum_probs=36.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC----CCcchHHHHHHHHHh----
Q 045672 81 IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE----RNVVSWTTMISAYCD---- 152 (643)
Q Consensus 81 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~---- 152 (643)
|++++..+++.++....-+--..--+..+.+.-.-|-.|.|.|+...+.++-..-.+ .+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 455555555555443322221111111223333344455566655555444332221 233345555444433
Q ss_pred -CCChhHHHHHH
Q 045672 153 -AKMNDKALELL 163 (643)
Q Consensus 153 -~g~~~~A~~~~ 163 (643)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666655
No 362
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=62.64 E-value=3.1e+02 Score=32.10 Aligned_cols=160 Identities=11% Similarity=-0.004 Sum_probs=72.9
Q ss_pred HHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHhHHhcCCCC
Q 045672 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED-GWNHFKSMKKFYGIDP 406 (643)
Q Consensus 328 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~-a~~~~~~~~~~~~~~p 406 (643)
+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++...+..+. +...+..+.+ .+
T Consensus 719 l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~----D~ 787 (897)
T PRK13800 719 FAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAGGAPAGDAVRALTG----DP 787 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc----CC
Confidence 3344455555555555555555544321 11222 13444444445555555544322 2333333333 35
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHc
Q 045672 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 486 (643)
+...-...+..+++.|..+.+...+..+-..+|..+-...+.++...+. +++...+..+++ +| +...-...+.++.+
T Consensus 788 d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-D~-~~~VR~~A~~aL~~ 864 (897)
T PRK13800 788 DPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT-DP-HLDVRKAAVLALTR 864 (897)
T ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc-CC-CHHHHHHHHHHHhc
Confidence 5666666667777776654443333333223455455555555555554 334444444432 22 23344444455544
Q ss_pred cCChhHHHHHHHHHH
Q 045672 487 SQKWDEVAEVRKTMR 501 (643)
Q Consensus 487 ~g~~~~a~~~~~~m~ 501 (643)
.+.-..+...+....
T Consensus 865 ~~~~~~a~~~L~~al 879 (897)
T PRK13800 865 WPGDPAARDALTTAL 879 (897)
T ss_pred cCCCHHHHHHHHHHH
Confidence 322234444444444
No 363
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.31 E-value=2e+02 Score=29.81 Aligned_cols=207 Identities=12% Similarity=0.062 Sum_probs=102.1
Q ss_pred HHHhCCCcchHHHHHHHHHhCCCCCCHhh--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchh--HHHHHHHHHHcCC
Q 045672 48 RFCYQRDLPRAMKAMHAMQCHGVRADSVT--YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF--LVNILLNMHVKFS 123 (643)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g 123 (643)
..++.|+.+-+ +.+.+.|..|+... -.+.+..++..|+.+- .+.+++.|..|+.. .....+...++.|
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 33455665444 44445676665432 3445556666777654 44555666554432 1123455566788
Q ss_pred ChhHHHHHHccCCCC----CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh---HHHHHHHHhchhhHHHHHH
Q 045672 124 LLEEAQVLFDQMPER----NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT---YSAVLRACDSLIILRQLHC 196 (643)
Q Consensus 124 ~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~~~~~~~~~~~~ 196 (643)
+.+.+..+++.-... +..-++. +...+..|+. ++++.+.+.|..|+... .+.+. ..+..++.+ +..
T Consensus 80 ~~~~v~~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh-~A~~~~~~~-~v~ 152 (413)
T PHA02875 80 DVKAVEELLDLGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLH-LAVMMGDIK-GIE 152 (413)
T ss_pred CHHHHHHHHHcCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHH-HHHHcCCHH-HHH
Confidence 888888888754321 1112223 3333445554 45566667777665332 22332 223333333 344
Q ss_pred HHHHhCCCCchh--HHHHHHHHHHHcCCHHHHHHHHhhCCCCCcc---hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 045672 197 GIIKVGFESDVF--VRSALIDIYAKLGELRNAECVFNEMPTRDLV---VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271 (643)
Q Consensus 197 ~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 271 (643)
.+.+.|..++.. ...+.+...+..|+.+-+..+++.-..++.. -..+.+...+..|+.+ +.+.+.+.|..+
T Consensus 153 ~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~ 228 (413)
T PHA02875 153 LLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADC 228 (413)
T ss_pred HHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCc
Confidence 455556544321 1222334445567777666666654443322 1123333334455543 334445566666
Q ss_pred CH
Q 045672 272 DQ 273 (643)
Q Consensus 272 ~~ 273 (643)
+.
T Consensus 229 n~ 230 (413)
T PHA02875 229 NI 230 (413)
T ss_pred ch
Confidence 54
No 364
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=61.87 E-value=1.7e+02 Score=28.86 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHE 433 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~ 433 (643)
......+-|++.|+-+.|.+.+.+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHH
Confidence 344455566666666666666544
No 365
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=61.72 E-value=2.6e+02 Score=30.94 Aligned_cols=48 Identities=15% Similarity=0.065 Sum_probs=36.7
Q ss_pred HHcCCHHHHHHHHHHHHhcC---CC------CcchHHHHHHHHHccCChhHHHHHHH
Q 045672 451 KVHRNTDLAICAAKKILNLD---PQ------DPGTYILLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~---p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 498 (643)
...+++..|....+.+.+.. |+ .+..+...+-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 45788999999999887642 22 24456666777778899999999997
No 366
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.69 E-value=25 Score=32.72 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=36.7
Q ss_pred CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHH
Q 045672 436 YEPDAVT-WRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTM 500 (643)
Q Consensus 436 ~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 500 (643)
+.|+..+ |..-+-.+.+..+++.+..--++++++.|+.......++........+++|...+.+.
T Consensus 39 ~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 39 INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3455433 2333333445556666666666666666666566666666666666666666666555
No 367
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=61.55 E-value=43 Score=31.07 Aligned_cols=63 Identities=10% Similarity=0.045 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCHHH-------HHHHHHHHHhcC--CC----CcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 442 TWRALLGACKVHRNTDL-------AICAAKKILNLD--PQ----DPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~-------a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
.+.-+...|+..|+.+. |...|+++.+.+ |. +......++.++.+.|+.++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34445555777777544 455555555433 22 23567788999999999999999999998654
No 368
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=60.89 E-value=17 Score=21.13 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 045672 454 RNTDLAICAAKKILNLDPQDPGTYILLSN 482 (643)
Q Consensus 454 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 482 (643)
|+.+.+..+|++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877777766554
No 369
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.54 E-value=64 Score=26.73 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 355 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
+..+-++......+.|++......|.||-+.+++..|.++|+-++.+ ..+....|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 45556666777788999999999999999999999999999988874 3343445666553
No 370
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=59.88 E-value=1e+02 Score=25.65 Aligned_cols=47 Identities=6% Similarity=0.089 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045672 57 RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSG 103 (643)
Q Consensus 57 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 103 (643)
+..+-+..+...++-|++......|++|.+.+|+..|.++++-+...
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45555566666777888888888888888888888888888776543
No 371
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.66 E-value=57 Score=25.06 Aligned_cols=66 Identities=12% Similarity=0.084 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHH
Q 045672 93 AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKAL 160 (643)
Q Consensus 93 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 160 (643)
+.+++..++..|+ .+..-...+-..-...|+.+.|+++++.++ +....|..++.++-..|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4566667766664 233333333332235678888888888888 77777888888888777765554
No 372
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.30 E-value=1.4e+02 Score=27.09 Aligned_cols=57 Identities=16% Similarity=0.073 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045672 311 ALLDMYCKCGSLEDAMSVFSRMIQKDVIS--WSTMISGLAQNGYSQEALKLFESMKVSR 367 (643)
Q Consensus 311 ~Li~~y~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g 367 (643)
.|.......|.+++|...++....++-.+ -..-.+.+...|+-++|..-|.+.+..+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34455566677777777776665553332 2223345666777777777777666654
No 373
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=58.48 E-value=99 Score=32.79 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=32.0
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCC--CChh---hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045672 310 NALLDMYCKCGSLEDAMSVFSRMIQ--KDVI---SWSTMISGLAQNGYSQEALKLFESMKV 365 (643)
Q Consensus 310 ~~Li~~y~~~g~~~~A~~~~~~m~~--~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~ 365 (643)
..|+.-|.+.+++++|..++..|.= -... +.+.+.+.+.+..-.++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3577788899999999999888831 1122 333334444444333444444444443
No 374
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.33 E-value=21 Score=23.37 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=13.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc
Q 045672 80 LIKCCLARHAVEEAKLVHNHVLSG 103 (643)
Q Consensus 80 ll~~~~~~~~~~~a~~~~~~~~~~ 103 (643)
+.++|...|+.+.|+.+++.++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555566666666666655543
No 375
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=58.32 E-value=7 Score=40.02 Aligned_cols=94 Identities=13% Similarity=0.114 Sum_probs=63.1
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH-HHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCC
Q 045672 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM-IDLLGRAGKLQEAVKLIHEM-PYEPDAV-TWRALLGACKVHRN 455 (643)
Q Consensus 379 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~ 455 (643)
+......+.++.|..++.++.+ +.|+-..|-+. ..++.+.+++..|+.=...+ ...|+.. .|-.-..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 4445566788888888888876 46765544332 36677888887777655444 4445432 33333456777788
Q ss_pred HHHHHHHHHHHHhcCCCCcc
Q 045672 456 TDLAICAAKKILNLDPQDPG 475 (643)
Q Consensus 456 ~~~a~~~~~~~~~~~p~~~~ 475 (643)
+.+|+..|+....+.|+++.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHH
Confidence 88888888888888898863
No 376
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=58.22 E-value=5.1e+02 Score=33.21 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=90.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHH----HHcCCCCchhHHHHHHHHHHcCCChhHHHHHHcc-CCCCCcchHHHHHHHHHhC
Q 045672 79 ELIKCCLARHAVEEAKLVHNHV----LSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQ-MPERNVVSWTTMISAYCDA 153 (643)
Q Consensus 79 ~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~-m~~~~~~~~~~li~~~~~~ 153 (643)
++..+-.+.+.+..|...++.- .+. ......+-.+...|+.-+++|...-+... ...++. ..-|......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhh
Confidence 4444556677788888888773 111 11223444555589999998888777763 333332 3345566778
Q ss_pred CChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhchhhHH--HHHHHHHHhCCCCchhHHHHH-HHHHHHcCCHHHHHHH
Q 045672 154 KMNDKALELLIFMLREGVRPN-MFTYSAVLRACDSLIILR--QLHCGIIKVGFESDVFVRSAL-IDIYAKLGELRNAECV 229 (643)
Q Consensus 154 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~--~~~~~~~~~g~~~~~~~~~~l-i~~y~~~g~~~~A~~~ 229 (643)
|+++.|...|+++.+. .|+ ..+++-+++..-..+.+. ..+..-......+....++++ +.+--+.+++|..+..
T Consensus 1463 g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred ccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 9999999999999865 455 667776666655555554 121111122222222222222 2333566777776666
Q ss_pred HhhCCCCCcchHHHH
Q 045672 230 FNEMPTRDLVVWNSI 244 (643)
Q Consensus 230 f~~~~~~~~~~~~~l 244 (643)
.. .++..+|.+.
T Consensus 1541 l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1541 LS---DRNIEYWSVE 1552 (2382)
T ss_pred hh---cccccchhHH
Confidence 55 5566666655
No 377
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=57.89 E-value=2.7e+02 Score=29.93 Aligned_cols=99 Identities=6% Similarity=0.021 Sum_probs=70.5
Q ss_pred HhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHH-ccCCHHHHHHHHHHHHHc-CCC-CchhHHHHHHHHHHcCCChh
Q 045672 50 CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCL-ARHAVEEAKLVHNHVLSG-GFE-PETFLVNILLNMHVKFSLLE 126 (643)
Q Consensus 50 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~ 126 (643)
.+.|..+.+.++|++-.+ |++.+...|...+..+. ..|+.+..+..|+.++.. |.+ .....|-..|..-..++++.
T Consensus 90 ~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 457888999999999885 56767777777766654 567888888899888774 321 23345677777777888999
Q ss_pred HHHHHHccCCCCCcchHHHHHHH
Q 045672 127 EAQVLFDQMPERNVVSWTTMISA 149 (643)
Q Consensus 127 ~A~~~f~~m~~~~~~~~~~li~~ 149 (643)
....+++++.+--...|+..-.-
T Consensus 169 ~v~~iyeRileiP~~~~~~~f~~ 191 (577)
T KOG1258|consen 169 RVANIYERILEIPLHQLNRHFDR 191 (577)
T ss_pred HHHHHHHHHHhhhhhHhHHHHHH
Confidence 99999998887444444444333
No 378
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.66 E-value=7.1 Score=38.14 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=48.5
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHH
Q 045672 421 AGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 421 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 498 (643)
.|.+++|++.|... +..|. ...+.--.+++.+.+....|++-+..+++++|+...-|-.-..+..-.|+|++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 45555555555544 33332 22333333445556666666666666666666665556555666666666666666666
Q ss_pred HHHhCCCC
Q 045672 499 TMRARGIT 506 (643)
Q Consensus 499 ~m~~~g~~ 506 (643)
...+.+..
T Consensus 207 ~a~kld~d 214 (377)
T KOG1308|consen 207 LACKLDYD 214 (377)
T ss_pred HHHhcccc
Confidence 66655544
No 379
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=57.12 E-value=1.3e+02 Score=25.91 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=29.6
Q ss_pred ChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 045672 336 DVISWSTMISGLAQNGY-SQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385 (643)
Q Consensus 336 ~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 385 (643)
+-.+|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44466666666654443 334556666666666666666666666666543
No 380
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=57.01 E-value=1e+02 Score=24.80 Aligned_cols=89 Identities=16% Similarity=0.198 Sum_probs=58.8
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 045672 86 ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165 (643)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 165 (643)
.....++|..|.+.+...+. ....+--.-+..+.+.|++++|...=.....||..+|-+|-. .+.|-.+++...+.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 44568899999999888764 333444445566788999999966666666799999987754 577888888888888
Q ss_pred HHHCCCCCChhhH
Q 045672 166 MLREGVRPNMFTY 178 (643)
Q Consensus 166 m~~~g~~p~~~t~ 178 (643)
+..+| .|....|
T Consensus 95 la~~g-~~~~q~F 106 (116)
T PF09477_consen 95 LASSG-SPELQAF 106 (116)
T ss_dssp HCT-S-SHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 86655 3433334
No 381
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=54.93 E-value=54 Score=28.04 Aligned_cols=63 Identities=13% Similarity=0.018 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCC
Q 045672 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489 (643)
Q Consensus 424 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 489 (643)
-+.|.++.+-|+ .....-.........|++..|.++.+.++..+|+|..+-...+++|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 356677777774 223333344556789999999999999999999998888888888866553
No 382
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=54.22 E-value=1.8e+02 Score=26.88 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHcCCChhHHHHHHccCCCCCcc-hHHHHHHH--HHhCCChhHHHHHHHH
Q 045672 90 VEEAKLVHNHVLSGGFEPE-TFLVNILLNMHVKFSLLEEAQVLFDQMPERNVV-SWTTMISA--YCDAKMNDKALELLIF 165 (643)
Q Consensus 90 ~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-~~~~li~~--~~~~g~~~~A~~~~~~ 165 (643)
...|+--|.+.+.. .|+ +.++|-|.-.+...|+++.|.+.|+...+.|+. -|..+=++ +--.|++.-|.+-|..
T Consensus 81 ~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 81 RALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred HHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 34444445555443 343 568888888889999999999999999886543 34333333 2345888888887777
Q ss_pred HHHC
Q 045672 166 MLRE 169 (643)
Q Consensus 166 m~~~ 169 (643)
.-+.
T Consensus 159 fYQ~ 162 (297)
T COG4785 159 FYQD 162 (297)
T ss_pred HHhc
Confidence 6654
No 383
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=53.73 E-value=62 Score=34.35 Aligned_cols=113 Identities=9% Similarity=0.067 Sum_probs=65.2
Q ss_pred HHHHHHHHHhCCCCC--CHhhHHHHHHHHH-ccCCHHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHcCCChhHHHHHHc
Q 045672 58 AMKAMHAMQCHGVRA--DSVTYAELIKCCL-ARHAVEEAKLVHNHVLSGGFEPE-TFLVNILLNMHVKFSLLEEAQVLFD 133 (643)
Q Consensus 58 A~~~~~~m~~~g~~p--~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~ 133 (643)
..+....|...|.+- ....+..+..+|- ..|+..+|.......+-...+.. -...-+|...+.+.|...+|.-++.
T Consensus 194 ~~~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILh 273 (886)
T KOG4507|consen 194 SIDDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILH 273 (886)
T ss_pred hHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheee
Confidence 344455555555433 3334555555554 45788888777766554321111 1234456677788888888877775
Q ss_pred cCCC-CCcc--hHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 045672 134 QMPE-RNVV--SWTTMISAYCDAKMNDKALELLIFMLREG 170 (643)
Q Consensus 134 ~m~~-~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g 170 (643)
...+ .+.+ .+-.+-+.++..|.+...+..|+...+.|
T Consensus 274 AA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~ 313 (886)
T KOG4507|consen 274 AALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQAR 313 (886)
T ss_pred hhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccC
Confidence 5443 1211 24456667777777777777777666554
No 384
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=53.61 E-value=1.6e+02 Score=28.45 Aligned_cols=87 Identities=15% Similarity=0.112 Sum_probs=53.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh-
Q 045672 344 ISGLAQNGYSQEALKLFESMKV--SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR- 420 (643)
Q Consensus 344 i~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 420 (643)
|.+++..+++.+++...-+--+ +.++|...-...+ .|++.|......++-..-.+. .-.-+..-|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 6778888888887764433221 2244444433333 477888888877777766653 222233447777766654
Q ss_pred ----cCCHHHHHHHHHh
Q 045672 421 ----AGKLQEAVKLIHE 433 (643)
Q Consensus 421 ----~g~~~~A~~~~~~ 433 (643)
.|.++||++++..
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 5888888888743
No 385
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.45 E-value=54 Score=29.78 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 438 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
|+..++..++.++...|+.++|.+..+++..+.|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4444444444444444555555555555444444
No 386
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=53.38 E-value=42 Score=26.27 Aligned_cols=53 Identities=9% Similarity=0.075 Sum_probs=37.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC----C-----cchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 450 CKVHRNTDLAICAAKKILNLDPQ----D-----PGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..+.|++..|.+.+.+..+.... . ..+...++.++...|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35677888887777777654321 1 13445677788889999999999988765
No 387
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.37 E-value=96 Score=25.09 Aligned_cols=27 Identities=15% Similarity=0.364 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKV 365 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 365 (643)
-|..++.-|..+|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588888889999999999999988876
No 388
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.31 E-value=2.9e+02 Score=28.96 Aligned_cols=103 Identities=16% Similarity=0.073 Sum_probs=64.7
Q ss_pred HHHHhcCCHHHHHHHHhhcC---CC---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHH-------HCCCCCC---
Q 045672 314 DMYCKCGSLEDAMSVFSRMI---QK---------DVISWSTMISGLAQNGYSQEALKLFESMK-------VSRIKPN--- 371 (643)
Q Consensus 314 ~~y~~~g~~~~A~~~~~~m~---~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~-------~~g~~p~--- 371 (643)
..+.-.|++.+|.+++.... .+ .-..||.|...+.+.|.+..+..+|.+.. ..|++|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 34556788888888876551 11 12246777766677777777766666654 3465553
Q ss_pred --------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 045672 372 --------YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419 (643)
Q Consensus 372 --------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 419 (643)
..+|+.-+ .+.+.|+.-.|.+.|....+.| ..++..|-.|.+++.
T Consensus 328 tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH
Confidence 22343322 4677888888888888888754 445556666666554
No 389
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=52.98 E-value=2e+02 Score=28.33 Aligned_cols=53 Identities=15% Similarity=0.038 Sum_probs=29.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHH
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYIT---IVGVLFACSHAGFVEDGWNHFKS 397 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~ 397 (643)
+..+-.+.|+..+|.+.|+.+.+. .|-... -..++.+|.....+.+...++.+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445678888888888776553 232211 22456666655555555444443
No 390
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=52.81 E-value=3.6e+02 Score=29.91 Aligned_cols=118 Identities=14% Similarity=0.074 Sum_probs=55.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 045672 347 LAQNGYSQEALKLFESMKVSRIKPN--YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424 (643)
Q Consensus 347 ~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 424 (643)
+..-|+.++|-.+.++|.... .|- ..-..++..+|+-.|+.....+++.-... ....|+.-+..+.-++.-..+.
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecCh
Confidence 444566667777777776543 221 11122344566666666666666655443 2333344444444444444555
Q ss_pred HHHHHHHHhC--CCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHh
Q 045672 425 QEAVKLIHEM--PYEPDAVTWRA--LLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 425 ~~A~~~~~~m--~~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
+....+..-+ ...|.+..=.+ |.-+|.-.|+ .+|+.+++-+..
T Consensus 588 ~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 5544444443 12333322122 2223333333 445666655544
No 391
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=52.71 E-value=4e+02 Score=30.31 Aligned_cols=217 Identities=18% Similarity=0.129 Sum_probs=108.0
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHH-------HHHHHHH-HHhcCChhHhHHHHHHHHhh------cCCchhHHhHHH
Q 045672 248 FAQNSDVDEALNLYKRMKRAGFAADQS-------TLTSVLR-ACTGLALLELGTQVHVHVLK------YDHDLILNNALL 313 (643)
Q Consensus 248 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~-a~~~~~~~~~a~~i~~~~~~------~~~~~~~~~~Li 313 (643)
.....++++|..+..+....-..|+.. .+..+-. .....|+++.+..+-+.+.. ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888888776542222221 2222111 12356788888888887776 333456667777
Q ss_pred HHHHhcCCHHHHHHHHhhcCC----CChhh---HHHHH--HHHHhcCCH--HHHHHHHHHHHHC--CCCC----CHHHHH
Q 045672 314 DMYCKCGSLEDAMSVFSRMIQ----KDVIS---WSTMI--SGLAQNGYS--QEALKLFESMKVS--RIKP----NYITIV 376 (643)
Q Consensus 314 ~~y~~~g~~~~A~~~~~~m~~----~~~~~---~~~li--~~~~~~g~~--~~A~~l~~~m~~~--g~~p----~~~t~~ 376 (643)
.+..-.|++++|..+.....+ .|+.. |..+. ..+..+|+. .+.+..|...... +-+| -..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777888888888877665432 24432 33332 224455632 2233333332221 0111 123444
Q ss_pred HHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCChHHH--HHHHHHHHhcCCHHHHHHHHHhC-----CCCC--CHHHHHHH
Q 045672 377 GVLFACSHA-GFVEDGWNHFKSMKKFYGIDPGREHY--SCMIDLLGRAGKLQEAVKLIHEM-----PYEP--DAVTWRAL 446 (643)
Q Consensus 377 ~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m-----~~~p--~~~~~~~l 446 (643)
.++.++.+. +...++..-+.--.. +...|-...+ ..|+..+...|++++|...++++ .-.| +...-...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~-~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSV-YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhh-cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 455555441 111222221211111 1222222222 36777788888888888887776 1112 22222222
Q ss_pred HHH--HHHcCCHHHHHHHHHH
Q 045672 447 LGA--CKVHRNTDLAICAAKK 465 (643)
Q Consensus 447 l~~--~~~~g~~~~a~~~~~~ 465 (643)
+.. ....||.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 222 3456777776665555
No 392
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.25 E-value=28 Score=38.65 Aligned_cols=97 Identities=18% Similarity=0.249 Sum_probs=65.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 045672 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428 (643)
Q Consensus 349 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 428 (643)
-+.++++.+.+.+.-.--| -++|..+.+.|-.+-|+.+.+.=..++ ++...+|+++.|+
T Consensus 605 i~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~al 663 (1202)
T KOG0292|consen 605 LNKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVAL 663 (1202)
T ss_pred HhhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHH
Confidence 3556777666655433222 134555567777777766554433322 2345689999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045672 429 KLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469 (643)
Q Consensus 429 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 469 (643)
+.-.+. .|..+|..|.......|+.+.|+..|++....
T Consensus 664 e~akkl---dd~d~w~rLge~Al~qgn~~IaEm~yQ~~knf 701 (1202)
T KOG0292|consen 664 EAAKKL---DDKDVWERLGEEALRQGNHQIAEMCYQRTKNF 701 (1202)
T ss_pred HHHHhc---CcHHHHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 887776 47788999999999999999999999887543
No 393
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.46 E-value=2.9e+02 Score=28.10 Aligned_cols=92 Identities=13% Similarity=0.084 Sum_probs=50.4
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHhCCC--CCC------HHHHHHHHHH
Q 045672 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG-RAGKLQEAVKLIHEMPY--EPD------AVTWRALLGA 449 (643)
Q Consensus 379 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~--~p~------~~~~~~ll~~ 449 (643)
+..+.+.|-+..|.++.+-+.. ....-|+.....+||.|+ ++++++--+++++.... ..+ ...|+..+.-
T Consensus 110 i~~L~~RG~~rTAlE~~KlLls-Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLS-LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh-cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 3455666777777777666654 122224555555666655 56666666666655421 111 1234433333
Q ss_pred HHHcCC--------------HHHHHHHHHHHHhcCC
Q 045672 450 CKVHRN--------------TDLAICAAKKILNLDP 471 (643)
Q Consensus 450 ~~~~g~--------------~~~a~~~~~~~~~~~p 471 (643)
+...+. .+.|...+.+++...|
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 332222 3788888888887777
No 394
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=50.35 E-value=90 Score=25.25 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=25.4
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHH
Q 045672 239 VVWNSIIGGFAQNSDVDEALNLYKRMKR 266 (643)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (643)
.-|..++..|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588999999999999999999999877
No 395
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.31 E-value=32 Score=33.32 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=35.6
Q ss_pred Chh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045672 336 DVI-SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL 379 (643)
Q Consensus 336 ~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 379 (643)
|.. -||..|..-.+.||+++|+.+++|..+.|+.--..||...+
T Consensus 255 dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 255 DTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 444 46789999999999999999999999999876666766544
No 396
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=50.22 E-value=50 Score=24.85 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=19.0
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHH
Q 045672 384 HAGFVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGRAGKLQEAVK 429 (643)
Q Consensus 384 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 429 (643)
+....++|+..|....++..-.|+ ..+..+|+.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555444443111111 1234444444444554444443
No 397
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=49.86 E-value=2.4e+02 Score=27.06 Aligned_cols=159 Identities=16% Similarity=0.131 Sum_probs=76.3
Q ss_pred hcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHhccCCHH-HHH
Q 045672 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM----KVSRIKPNYITIVGVLFACSHAGFVE-DGW 392 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t~~~ll~a~~~~g~~~-~a~ 392 (643)
+++++++|.+++..- ...+.++|+..-|-++-.-| .+.+.++|......++..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456666766664321 23345556555544443332 33455666555455544443332111 122
Q ss_pred HHHHHhHHh--cCCC--CChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 393 NHFKSMKKF--YGID--PGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 393 ~~~~~~~~~--~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
++.+.+.+- .+-. -++.....+...|.+.|++.+|..-|-.-. .|+...+..++..+...|.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~------------- 136 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGY------------- 136 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTS-------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcC-------------
Confidence 222222221 1222 356778888899999999999988775442 2233333223333333333
Q ss_pred cCCCCcchHH-HHHHHHHccCChhHHHHHHHHHHhC
Q 045672 469 LDPQDPGTYI-LLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 469 ~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
|.+...|. ...--|.-.|+...|...++...++
T Consensus 137 --~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 137 --PSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp --S--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred --CcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33333332 3334466778999999988877754
No 398
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=49.24 E-value=2.5e+02 Score=26.99 Aligned_cols=157 Identities=14% Similarity=0.125 Sum_probs=73.8
Q ss_pred HcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHH----HHcCCCCCHHHHHHHHHHHhcCChhH-hHH
Q 045672 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM----KRAGFAADQSTLTSVLRACTGLALLE-LGT 293 (643)
Q Consensus 219 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~a~~~~~~~~-~a~ 293 (643)
+.+++++|.+++.. =...+.+.|+...|-++-.-| .+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666665432 223344555554444433332 33455556655555555444333211 222
Q ss_pred HHHHHHhh-------cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045672 294 QVHVHVLK-------YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366 (643)
Q Consensus 294 ~i~~~~~~-------~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 366 (643)
.+...+++ -..+......+...|.+.|++.+|+..|-.-.+++...+-.++.-....|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 33333333 2345677888899999999999999887655444433332233222222222221
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 045672 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401 (643)
Q Consensus 367 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 401 (643)
|...-..++ -|...+++..|...+....+.
T Consensus 141 ----dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ----DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ----HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 222222333 344567788888777666653
No 399
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.59 E-value=2e+02 Score=25.64 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=62.1
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhhHHHH-----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH--HHHhccCC
Q 045672 316 YCKCGSLEDAMSVFSRMIQKDVISWSTM-----ISGLAQNGYSQEALKLFESMKVSRIKPNYI-TIVGVL--FACSHAGF 387 (643)
Q Consensus 316 y~~~g~~~~A~~~~~~m~~~~~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll--~a~~~~g~ 387 (643)
.+..+..++|..-|..+.+.+--+|-.| ....++.|+...|...|++.-...-.|-.. -...|= ..+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 3456667777777776655544444433 234556677777777777765543333322 111111 12355666
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 388 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
+++...-.+-+... +.+.....-.+|.-+-.+.|++.+|.+.|..+
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 66655555444332 22222233344555555677777777777665
No 400
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=47.37 E-value=53 Score=33.82 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=30.6
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 430 LIHEMPYEPDA--VTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 430 ~~~~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
+|...+++|.. .++++-++.+.+++|+..|-.+.++++++.|+.
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 44444555543 366777788899999999999999999998864
No 401
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=47.34 E-value=2.8e+02 Score=27.00 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045672 411 YSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKIL 467 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 467 (643)
.+.....|..+|.+.+|.++.++. ...| +...|..|+..+...||--.+..-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344455677777888887777766 3333 55567777777777777666666665553
No 402
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.20 E-value=75 Score=28.85 Aligned_cols=51 Identities=14% Similarity=0.001 Sum_probs=32.1
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 384 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
...+.+......+.+.+.....|++..|..++..+...|+.++|.+...++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555444444444445677777777777777777777777776666
No 403
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=46.54 E-value=3.8e+02 Score=28.36 Aligned_cols=156 Identities=13% Similarity=0.132 Sum_probs=91.4
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHH
Q 045672 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYC 317 (643)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~ 317 (643)
...-+++..+.++-...-...+..+|..-| -+...+..++..|... .-+.--.+++++++ .-.|++...-|++.|-
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yE 143 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYE 143 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 344456666666666666666666666643 3455666666666655 44555566666666 3344455556666665
Q ss_pred hcCCHHHHHHHHhhcCCC------Ch---hhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCC
Q 045672 318 KCGSLEDAMSVFSRMIQK------DV---ISWSTMISGLAQNGYSQEALKLFESMKV-SRIKPNYITIVGVLFACSHAGF 387 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~~~------~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~ 387 (643)
+ ++.+.+...|.++..+ +. ..|..++..- ..+.+..+.+..+... .|..--.+.+--+-.-|+...+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 5 7777777777665221 11 1455554321 2345556666655543 2333345555566667788888
Q ss_pred HHHHHHHHHHhHH
Q 045672 388 VEDGWNHFKSMKK 400 (643)
Q Consensus 388 ~~~a~~~~~~~~~ 400 (643)
+.+|++++..+.+
T Consensus 221 ~~eai~Ilk~il~ 233 (711)
T COG1747 221 WTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888876655
No 404
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.85 E-value=29 Score=29.10 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=23.0
Q ss_pred CCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 045672 52 QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCC 84 (643)
Q Consensus 52 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 84 (643)
.|.-.+|-.+|.+|+..|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 46667788888889888887764 56666654
No 405
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=45.55 E-value=58 Score=20.19 Aligned_cols=29 Identities=21% Similarity=-0.026 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCHHHHHHH--HHHHHhcCCC
Q 045672 444 RALLGACKVHRNTDLAICA--AKKILNLDPQ 472 (643)
Q Consensus 444 ~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~ 472 (643)
-.+.-.+...|++++|+.+ ++-+..++|.
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3444456666777777777 3355555543
No 406
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.45 E-value=71 Score=21.31 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=28.7
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 045672 148 SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184 (643)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 184 (643)
....+.|-.+++..++++|.+.|+..+...+..+++.
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 3445678888899999999999988888877776653
No 407
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=45.44 E-value=33 Score=31.72 Aligned_cols=57 Identities=28% Similarity=0.415 Sum_probs=38.2
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 417 LLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
+..+.|+.+.|.+++.+. ...| ....|--+...-.+.|+++.|.+.+++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344566667777777665 3323 45567666666677788888888888888777765
No 408
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.96 E-value=4.8e+02 Score=29.06 Aligned_cols=50 Identities=26% Similarity=0.354 Sum_probs=35.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
|-..++|.|.++.-.++++-. ..+.+-.-..++.+|.++.+.|.++.|+.
T Consensus 350 Ln~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 350 LNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 334567888877766665432 23445556789999999999999999864
No 409
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.58 E-value=36 Score=32.99 Aligned_cols=45 Identities=22% Similarity=0.154 Sum_probs=36.9
Q ss_pred CCcc-hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 045672 138 RNVV-SWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182 (643)
Q Consensus 138 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 182 (643)
+|.. -||..|....+.|++++|+.++++..+.|+.--..||...+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 3443 37799999999999999999999999999887777766543
No 410
>PRK10941 hypothetical protein; Provisional
Probab=44.26 E-value=1.8e+02 Score=28.08 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 045672 411 YSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 476 (643)
.+.+-.+|.+.++++.|++..+.+ .+.|+ ..-|.--.-.|.+.|.+..|..-++..++..|+++.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 344556778888888888888877 44454 4456666666888999999999999999988887744
No 411
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=44.17 E-value=72 Score=24.01 Aligned_cols=46 Identities=11% Similarity=0.044 Sum_probs=30.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHH
Q 045672 349 QNGYSQEALKLFESMKVSRIKPN--YITIVGVLFACSHAGFVEDGWNH 394 (643)
Q Consensus 349 ~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 394 (643)
...+.++|+..|+...+.-..|. -.++..++.+++..|.+.+.+.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888887766433332 24566777788888887776654
No 412
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=43.99 E-value=73 Score=21.26 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=17.2
Q ss_pred HhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHH
Q 045672 50 CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIK 82 (643)
Q Consensus 50 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 82 (643)
.+.|-..++..++++|.+.|+.-+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344555555555555555555555555554443
No 413
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.71 E-value=22 Score=29.73 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=25.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 382 (643)
-..|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456666899999999999999985 56666554
No 414
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=43.67 E-value=91 Score=24.33 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=19.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC
Q 045672 446 LLGACKVHRNTDLAICAAKKILNLD 470 (643)
Q Consensus 446 ll~~~~~~g~~~~a~~~~~~~~~~~ 470 (643)
+.......|+.++|...+++++++-
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4445677899999999999988753
No 415
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=43.15 E-value=1.8e+02 Score=31.17 Aligned_cols=145 Identities=13% Similarity=0.070 Sum_probs=87.2
Q ss_pred CCCCHHHHHHHHHHHhcC--ChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhc----CCCChhhHH
Q 045672 269 FAADQSTLTSVLRACTGL--ALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRM----IQKDVISWS 341 (643)
Q Consensus 269 ~~p~~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m----~~~~~~~~~ 341 (643)
--|+..|...++.-.... ..-+.|..++-.+.+ ..|-....|...-.+--.|+...|.+.+... +...-++.-
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 346666666655544432 234445555555555 4554444443333334478888887776655 222334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 342 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
.+.....+.|-..+|-.++.+...-. ...+.++..+.+++.-..+++.|++.|+...+. -+.+.+.-+.|..
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~--~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL--TTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc--CCCChhhHHHHHH
Confidence 56666667777777888777766543 445677778888888888899998888887762 2334455555543
No 416
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.50 E-value=1.7e+02 Score=24.45 Aligned_cols=42 Identities=7% Similarity=0.009 Sum_probs=32.8
Q ss_pred HHHHHHHHHHh--cCCCCcchHHHHHHHHHccCChhHHHHHHHH
Q 045672 458 LAICAAKKILN--LDPQDPGTYILLSNIYANSQKWDEVAEVRKT 499 (643)
Q Consensus 458 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 499 (643)
.+..+|..|.. ++-.-+..|..-+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77778887765 4566677888888999999999999998864
No 417
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=41.90 E-value=3.3e+02 Score=26.34 Aligned_cols=234 Identities=11% Similarity=0.100 Sum_probs=112.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHH
Q 045672 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRN 225 (643)
Q Consensus 146 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 225 (643)
+.+-..+.+++++|+..|.+.+..|+..|..+.+-- ..+...|...|...|+...
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEq-------------------------E~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQ-------------------------EATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHH-------------------------HHHHHHHHHHHHhcCCcch
Confidence 455567788999999999999999988887766531 1223345666777776555
Q ss_pred HHHHHhhCCC-------C-CcchHHHHHHHHHhC-CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHH
Q 045672 226 AECVFNEMPT-------R-DLVVWNSIIGGFAQN-SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296 (643)
Q Consensus 226 A~~~f~~~~~-------~-~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 296 (643)
-.+......+ + .+....++|.-+-.. ..++.-+.+.....+. .+- +-+.++
T Consensus 64 l~~~i~~sre~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iew-------------------A~r-Ekr~fL 123 (421)
T COG5159 64 LGDTITSSREAMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEW-------------------ADR-EKRKFL 123 (421)
T ss_pred HHHHHHhhHHHHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-------------------HHH-HHHHHH
Confidence 4433322111 1 111122222222111 1122222222221111 000 001111
Q ss_pred HHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhc-------C-CCChhhHHHH-HHHHHhcCCHHHHHHHHHHHHH--
Q 045672 297 VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM-------I-QKDVISWSTM-ISGLAQNGYSQEALKLFESMKV-- 365 (643)
Q Consensus 297 ~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m-------~-~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~-- 365 (643)
+ ...-.-++..|.+.|.+.+|..+...+ . +++.++...+ -.+|-...+..++..-+.....
T Consensus 124 r--------~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~A 195 (421)
T COG5159 124 R--------LELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLA 195 (421)
T ss_pred H--------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 1 112256788889999999998876544 1 2233322211 1234444444444444433322
Q ss_pred -CC-CCCCHHHHHHHHHHH--hccCCHHHHHHHHHHhHHhcC-CCCChHHHHHHHHHHH---hcCCHHHHHHHHH
Q 045672 366 -SR-IKPNYITIVGVLFAC--SHAGFVEDGWNHFKSMKKFYG-IDPGREHYSCMIDLLG---RAGKLQEAVKLIH 432 (643)
Q Consensus 366 -~g-~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~---~~g~~~~A~~~~~ 432 (643)
+- .+|-...-.-++++. +...++..|..+|-+..+.+. ...+......|=-++. -.++.++...+++
T Consensus 196 ns~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~ 270 (421)
T COG5159 196 NSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLR 270 (421)
T ss_pred hccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHc
Confidence 11 244444444555554 344577888888887776322 2234443333322222 2345555555543
No 418
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=41.83 E-value=2e+02 Score=23.97 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHH
Q 045672 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR-ALLGACKVHRNTDLAICAAKKI 466 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~ 466 (643)
...+-.++..++.-.|..++|.++++..+--++-...| -++..|....+.++..++-++.
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34456667777777788888888877775444444333 4666677666666655554443
No 419
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.15 E-value=3.9e+02 Score=28.74 Aligned_cols=127 Identities=13% Similarity=0.075 Sum_probs=80.4
Q ss_pred chHHHHH---HHHHhCCCcchHHHHHHHHH-------hCCCCC-------------CHhhHHHH---HHHHHccCCHHHH
Q 045672 40 SSLLDDF---TRFCYQRDLPRAMKAMHAMQ-------CHGVRA-------------DSVTYAEL---IKCCLARHAVEEA 93 (643)
Q Consensus 40 ~~~~~li---~~~~~~g~~~~A~~~~~~m~-------~~g~~p-------------~~~~~~~l---l~~~~~~~~~~~a 93 (643)
..-+++| ..+-.+|+.+-|.++.++.+ ...+.| |..-|.++ ++.+.+.|.+..|
T Consensus 282 YHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA 361 (665)
T KOG2422|consen 282 YHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTA 361 (665)
T ss_pred cchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHH
Confidence 3344444 45667888887777766543 211111 33334444 4566789999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHH-cCCChhHHHHHHccCCC-------CCcchHHH-HHHHHHhCCC---hhHHHH
Q 045672 94 KLVHNHVLSGGFEPETFLVNILLNMHV-KFSLLEEAQVLFDQMPE-------RNVVSWTT-MISAYCDAKM---NDKALE 161 (643)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~f~~m~~-------~~~~~~~~-li~~~~~~g~---~~~A~~ 161 (643)
.+.-..+.+....-|+...-.+|+.|+ +..++.--+++|+.... || ..|.. |...|.+... -+.|+.
T Consensus 362 ~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~ 440 (665)
T KOG2422|consen 362 LEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFLRKNEEDDRQSALN 440 (665)
T ss_pred HHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHHhcCChhhHHHHHH
Confidence 999999999877668888888898885 66778877777776532 33 34544 4445554444 244555
Q ss_pred HHHHHH
Q 045672 162 LLIFML 167 (643)
Q Consensus 162 ~~~~m~ 167 (643)
.+.+..
T Consensus 441 ~l~qAl 446 (665)
T KOG2422|consen 441 ALLQAL 446 (665)
T ss_pred HHHHHH
Confidence 555544
No 420
>PRK09169 hypothetical protein; Validated
Probab=40.62 E-value=9.2e+02 Score=31.09 Aligned_cols=462 Identities=11% Similarity=0.036 Sum_probs=249.7
Q ss_pred cchHHHHHHHHHhCCCcchHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH---cC----CC
Q 045672 39 SSSLLDDFTRFCYQRDLPRAMKAMHAMQCH-----GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLS---GG----FE 106 (643)
Q Consensus 39 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~g----~~ 106 (643)
...|..+.+.+++.-+.....+.+..+-.. .-..+...+..+++++++=.+-..+...-..+.. .. ..
T Consensus 122 ~~~~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~a 201 (2316)
T PRK09169 122 LAQLAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQA 201 (2316)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHh
Confidence 445777788887777766555544433221 1134566778888888875554444333333311 10 11
Q ss_pred CchhHHHHHHHHHHcCCChhHHHHHHccCC-----------CCCcchHHHHHHHHHhCCChhHHHHHHHHH----HHC--
Q 045672 107 PETFLVNILLNMHVKFSLLEEAQVLFDQMP-----------ERNVVSWTTMISAYCDAKMNDKALELLIFM----LRE-- 169 (643)
Q Consensus 107 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~-- 169 (643)
.+..-...++++++|.-+-......-..+. .-+......+++++++--+.+.+...-..+ ...
T Consensus 202 l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~ 281 (2316)
T PRK09169 202 MDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPG 281 (2316)
T ss_pred cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChh
Confidence 233444556777777655544443333221 124456677888888876655443332222 211
Q ss_pred -CCCCChhhHHHHHHHHhchhhHH-------HHHHHHHH---hCCCCchhHHHHHHHHHHHcCCHHHHHHH----HhhCC
Q 045672 170 -GVRPNMFTYSAVLRACDSLIILR-------QLHCGIIK---VGFESDVFVRSALIDIYAKLGELRNAECV----FNEMP 234 (643)
Q Consensus 170 -g~~p~~~t~~~ll~a~~~~~~~~-------~~~~~~~~---~g~~~~~~~~~~li~~y~~~g~~~~A~~~----f~~~~ 234 (643)
....|..-....+.++++-.+-+ .+-..+.. ..-..+..-....+++++|..+-+.+... -+.+.
T Consensus 282 lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~ 361 (2316)
T PRK09169 282 LRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLA 361 (2316)
T ss_pred hhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 12346667778888887764433 12122211 11234455556677888888876654322 22222
Q ss_pred C-------CCcchHHHHHHHHHhCCChhH----HHHHHHHHHHc-C--CCCCHHHHHHHHHHHhcCChhHhHHHHHHHHh
Q 045672 235 T-------RDLVVWNSIIGGFAQNSDVDE----ALNLYKRMKRA-G--FAADQSTLTSVLRACTGLALLELGTQVHVHVL 300 (643)
Q Consensus 235 ~-------~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~-g--~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 300 (643)
. -|.--....+.++++-++-+. |..+..++... + -..|..-...++.+|++.+.-+.+.+....+.
T Consensus 362 ~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA 441 (2316)
T PRK09169 362 RDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALA 441 (2316)
T ss_pred hChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 1 134445567778887665432 33343333332 1 13567778889999998876664444333222
Q ss_pred h---------cCCchhHHhHHHHHHHhcCCHHHH----HHHHhhcCC-------CChhhHHHHHHHHHhcCCHHHHH---
Q 045672 301 K---------YDHDLILNNALLDMYCKCGSLEDA----MSVFSRMIQ-------KDVISWSTMISGLAQNGYSQEAL--- 357 (643)
Q Consensus 301 ~---------~~~~~~~~~~Li~~y~~~g~~~~A----~~~~~~m~~-------~~~~~~~~li~~~~~~g~~~~A~--- 357 (643)
. -..+..-....+.+++|.++.+.. ..+...+.. -+..-....+.++++-++.+...
T Consensus 442 ~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA 521 (2316)
T PRK09169 442 ARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAA 521 (2316)
T ss_pred HHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHH
Confidence 2 233455566777888887765533 233333311 14445667788888888765532
Q ss_pred -HHHHHHHHC---CCCCCHHHHHHHHHHHhccCCHHHHH----HHHHHhHHhcC--CCCChHHHHHHHHHHHhcCCHHH-
Q 045672 358 -KLFESMKVS---RIKPNYITIVGVLFACSHAGFVEDGW----NHFKSMKKFYG--IDPGREHYSCMIDLLGRAGKLQE- 426 (643)
Q Consensus 358 -~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~----~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~- 426 (643)
.+..++... --.-|..-+...+.++++-++.+.+. .+...+.++-+ -..+.......+.++.+-+.-..
T Consensus 522 ~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~ac 601 (2316)
T PRK09169 522 EALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDAC 601 (2316)
T ss_pred HHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhH
Confidence 233322221 11335666778899999887754433 23333322101 12345567777888888775432
Q ss_pred ---HHHHHHhCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCC-----CCcchHHHHHHHHHccCC
Q 045672 427 ---AVKLIHEMP------YEPDAVTWRALLGACKVHRNTDLAICAAKKILN---LDP-----QDPGTYILLSNIYANSQK 489 (643)
Q Consensus 427 ---A~~~~~~m~------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~p-----~~~~~~~~l~~~~~~~g~ 489 (643)
|..+...+. ..-|..-+...++++.+-.+.+........+-. .++ -++.-...+++++++-.+
T Consensus 602 r~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~ 681 (2316)
T PRK09169 602 RAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPD 681 (2316)
T ss_pred HHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCC
Confidence 233333331 112566778888999888877665544443332 111 144456677788888887
Q ss_pred hhHHHHHHHHH
Q 045672 490 WDEVAEVRKTM 500 (643)
Q Consensus 490 ~~~a~~~~~~m 500 (643)
.+.+.+....+
T Consensus 682 ~~~c~~Aa~aL 692 (2316)
T PRK09169 682 EAACRAAALAL 692 (2316)
T ss_pred cHHHHHHHHHH
Confidence 66655555444
No 421
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=40.07 E-value=4.8e+02 Score=27.67 Aligned_cols=176 Identities=14% Similarity=0.114 Sum_probs=120.5
Q ss_pred CCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHH
Q 045672 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISG 346 (643)
Q Consensus 270 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~ 346 (643)
..|.....+++..++........+.+..++.....+-..+-.++..|... ..++-..+++++.+- |++--..+..-
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 34667778888888888888888888888888777888888999999888 566777788866543 44444445555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 045672 347 LAQNGYSQEALKLFESMKVSRIKPN------YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420 (643)
Q Consensus 347 ~~~~g~~~~A~~l~~~m~~~g~~p~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 420 (643)
|-+ ++.+++...|.+....= -|. ...|.-+... -..+.+.-.++...+.+..|..--...+.-+-.-|..
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrf-I~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRF-IPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 554 88888888998876542 231 1133333321 1456777777788887776666666677777788888
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 045672 421 AGKLQEAVKLIHEM--PYEPDAVTWRALLGAC 450 (643)
Q Consensus 421 ~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~ 450 (643)
..++++|++++..+ ..+.|.-.-..++.-+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 89999999998866 1233444444444443
No 422
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=40.06 E-value=54 Score=31.73 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=19.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHH
Q 045672 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEV 496 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 496 (643)
+.|+.++|..+|+.++.+.|.++.++..++.......+.-+|..+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~ 172 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQC 172 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhh
Confidence 344444444444444444444444444444433333333333333
No 423
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=39.55 E-value=3.2e+02 Score=25.44 Aligned_cols=60 Identities=15% Similarity=0.038 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 399 (643)
|.+.-++.+.+.+...+|+...++-++.. +.|.-+-..++.-++-.|++++|..-++-..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 34455667777888888888877776652 2334445566677778888888876665544
No 424
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=38.94 E-value=3.9e+02 Score=26.33 Aligned_cols=98 Identities=15% Similarity=0.027 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHhHHhcCC---CCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045672 387 FVEDGWNHFKSMKKFYGI---DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAA 463 (643)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 463 (643)
-.++|.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+.....+.+...+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 366788888888773111 33556666777777788886665566655554567777888889988888999989999
Q ss_pred HHHHhcC-CCCcchHHHHHHHH
Q 045672 464 KKILNLD-PQDPGTYILLSNIY 484 (643)
Q Consensus 464 ~~~~~~~-p~~~~~~~~l~~~~ 484 (643)
+.++.-+ -.....+..+....
T Consensus 225 ~~~l~~~~v~~~d~~~~~~~~~ 246 (324)
T PF11838_consen 225 DLLLSNDKVRSQDIRYVLAGLA 246 (324)
T ss_dssp HHHHCTSTS-TTTHHHHHHHHH
T ss_pred HHHcCCcccccHHHHHHHHHHh
Confidence 9988843 22223444444443
No 425
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=38.42 E-value=2.1e+02 Score=23.08 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=29.6
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 045672 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITI 375 (643)
Q Consensus 315 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 375 (643)
.+.+.|++++|...=.....||...|-++-. .+.|-.+++...+.++..+| .|....|
T Consensus 49 sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 49 SLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S-SHHHHHH
T ss_pred HHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3456677777744333445567776655433 35666666666666665554 4444444
No 426
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.36 E-value=6.8e+02 Score=28.88 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHH
Q 045672 240 VWNSIIGGFAQNSDVDEALNLYKRMKR 266 (643)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (643)
-|..|+..|...|+.++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 478899999999999999999998876
No 427
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.29 E-value=4.2e+02 Score=27.17 Aligned_cols=60 Identities=13% Similarity=0.094 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHh--hHHHHHHHHH--ccCCHHHHHHHHHHHHHc
Q 045672 42 LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSV--TYAELIKCCL--ARHAVEEAKLVHNHVLSG 103 (643)
Q Consensus 42 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 103 (643)
|.... .+...++|..|.++|+.+.+. ++++.. .+..+..+|. ..-++++|...++.....
T Consensus 135 ~~~a~-~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAK-ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHH-HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44444 444789999999999999986 566554 4455555554 466788999999887664
No 428
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=37.98 E-value=4.8e+02 Score=27.08 Aligned_cols=99 Identities=8% Similarity=-0.081 Sum_probs=46.8
Q ss_pred HHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCh
Q 045672 46 FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL 125 (643)
Q Consensus 46 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 125 (643)
|.++...| ..++..+....... ++...+.....++....+......+.+.+ ..++..+.......+.+.+..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L----~d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL----QAGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh----cCCCHHHHHHHHHHHhcCCch
Confidence 55666666 45666655555332 22333333333333222222122222222 234455666666777666665
Q ss_pred hHHHHHHccCCCCCcchHHHHHHHHHh
Q 045672 126 EEAQVLFDQMPERNVVSWTTMISAYCD 152 (643)
Q Consensus 126 ~~A~~~f~~m~~~~~~~~~~li~~~~~ 152 (643)
.....+..-+...+...-.+.+.++..
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~ 143 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGA 143 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 555555544444555444444455444
No 429
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.97 E-value=61 Score=23.06 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=21.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045672 336 DVISWSTMISGLAQNGYSQEALKLFESMKV 365 (643)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 365 (643)
|-.---.+|.||.+.|++++|.+..+++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444578888888888888888887754
No 430
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=36.97 E-value=4e+02 Score=25.83 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=33.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHhcCChhHhH
Q 045672 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL-------TSVLRACTGLALLELG 292 (643)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------~~ll~a~~~~~~~~~a 292 (643)
+..-..+.+++++|+..+.+....|+..|..+. ..+...|...|+...-
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 344456778899999999999999888776554 3455555555554433
No 431
>PF15161 Neuropep_like: Neuropeptide-like
Probab=36.90 E-value=20 Score=24.32 Aligned_cols=16 Identities=38% Similarity=0.891 Sum_probs=11.6
Q ss_pred ccccccchhhHHHHHhh
Q 045672 599 NLRICGDCHTFAKLTAK 615 (643)
Q Consensus 599 ~l~~c~~~~~~~~~~s~ 615 (643)
.-|-|.|||.+. |+.+
T Consensus 12 esRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 12 ESRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCCchhhHHHH-HHHH
Confidence 457799999876 5543
No 432
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=36.72 E-value=4e+02 Score=25.81 Aligned_cols=147 Identities=10% Similarity=-0.050 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-----
Q 045672 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSH----AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG----- 422 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----- 422 (643)
+..+|.+.|+.+-+.|..+-.. .+...+.. ..+..+|..+|....+. |..+.......+...|..-+
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~---~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALF---NLGLMYANGRGVPLDLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHH---hHHHHHhcCCCcccCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcc
Confidence 4556666666655554322111 12222222 23666677777666663 44433222333333333321
Q ss_pred --CHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccC--------
Q 045672 423 --KLQEAVKLIHEMPYEPDAVTWRALLGAC----KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ-------- 488 (643)
Q Consensus 423 --~~~~A~~~~~~m~~~p~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 488 (643)
+...|...+.++-..-+......+...| ....+.++|...|+++-+.+. ......+. .+...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 168 AYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred cHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhh
Confidence 2235666666652112333322232222 223477888888888877766 34555555 444444
Q ss_pred -------ChhHHHHHHHHHHhCCC
Q 045672 489 -------KWDEVAEVRKTMRARGI 505 (643)
Q Consensus 489 -------~~~~a~~~~~~m~~~g~ 505 (643)
+...|...+......|.
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCC
Confidence 66666666666665554
No 433
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.71 E-value=6.5e+02 Score=28.23 Aligned_cols=165 Identities=12% Similarity=0.131 Sum_probs=93.2
Q ss_pred HHHHHhCCCcchHHHHHHHHHhCCCCC---CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcC
Q 045672 46 FTRFCYQRDLPRAMKAMHAMQCHGVRA---DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF 122 (643)
Q Consensus 46 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 122 (643)
|..+.+.+.+++|++.-+.-. |..| -.......+..+...|++++|-...-.|. ..+..-|-.-+.-+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhccc
Confidence 555778899999998876554 3334 23345666777777888888887777773 23455555555555555
Q ss_pred CChhHHHHHHccCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH--HHHHhchhhHHHHHH
Q 045672 123 SLLEEAQVLFDQMPE----RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV--LRACDSLIILRQLHC 196 (643)
Q Consensus 123 g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l~a~~~~~~~~~~~~ 196 (643)
++... ++.-+|. .+...|..++..+.. .+. .-|.+.+.. -+...|+.+ +++ +..
T Consensus 437 ~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~~---Wp~~Lys~l~iisa---------~~~ 496 (846)
T KOG2066|consen 437 DQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIKE---WPGHLYSVLTIISA---------TEP 496 (846)
T ss_pred cccch---hhccCCCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHHh---CChhhhhhhHHHhh---------cch
Confidence 55443 3333443 245568888877776 211 222222221 122222221 111 111
Q ss_pred HHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCc
Q 045672 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238 (643)
Q Consensus 197 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~ 238 (643)
.+.+. ..+..+...|+..|...+++.+|...+-...++++
T Consensus 497 q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 497 QIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 11111 11122233389999999999999999988877654
No 434
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.15 E-value=53 Score=23.37 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=19.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHH
Q 045672 241 WNSIIGGFAQNSDVDEALNLYKRMKR 266 (643)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (643)
.-.+|.+|.+.|++++|.+++.++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33578888888888888888887765
No 435
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.96 E-value=2e+02 Score=25.77 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hHH-----HHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 388 VEDGWNHFKSMKKFYGIDPG-REH-----YSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 388 ~~~a~~~~~~~~~~~~~~p~-~~~-----~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
++.|..+|+.+.+....+-+ ... --..+-.|.+.|.+++|.+++++.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 45566666666664221100 001 112233455566666666666555
No 436
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=35.72 E-value=7.2e+02 Score=29.17 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=20.0
Q ss_pred hHHhHHHHHHHhcC--CHHHHHHHHhhcCCCC
Q 045672 307 ILNNALLDMYCKCG--SLEDAMSVFSRMIQKD 336 (643)
Q Consensus 307 ~~~~~Li~~y~~~g--~~~~A~~~~~~m~~~~ 336 (643)
.....++.+|++.+ ++++|+....++.+.+
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~ 844 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREED 844 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhcC
Confidence 34456777777777 7777777777766543
No 437
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=35.14 E-value=7.9e+02 Score=28.74 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=53.6
Q ss_pred CCchhHHhHHHHHHHhcCCHHHHH-HHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045672 303 DHDLILNNALLDMYCKCGSLEDAM-SVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381 (643)
Q Consensus 303 ~~~~~~~~~Li~~y~~~g~~~~A~-~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 381 (643)
.++..+-.+.+..+.+.|..+.+. .+...+.++|...-...+.++...+. +++...+..+.. .|+...-...+.+
T Consensus 786 D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~a 861 (897)
T PRK13800 786 DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLA 861 (897)
T ss_pred CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHH
Confidence 345556666777777777654442 23344445555555556666666664 356666666654 4565555566666
Q ss_pred HhccCCHHHHHHHHHHhHH
Q 045672 382 CSHAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~ 400 (643)
+.+.+.-..+...+..+.+
T Consensus 862 L~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 862 LTRWPGDPAARDALTTALT 880 (897)
T ss_pred HhccCCCHHHHHHHHHHHh
Confidence 6665334455666655554
No 438
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.49 E-value=1.1e+02 Score=21.79 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=30.6
Q ss_pred HHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHH-----ccCCHHHHHHH
Q 045672 49 FCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCL-----ARHAVEEAKLV 96 (643)
Q Consensus 49 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-----~~~~~~~a~~~ 96 (643)
+...|++-+|-++++.+-.....+....+..+|+.+. +.|+.+.|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4568899999999999875433445566666666543 45666666554
No 439
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=34.14 E-value=2.2e+02 Score=22.04 Aligned_cols=62 Identities=21% Similarity=0.154 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHccCChh-HHHHHHHHH
Q 045672 439 DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ--DPGTYILLSNIYANSQKWD-EVAEVRKTM 500 (643)
Q Consensus 439 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 500 (643)
|....-.+...+...|+++.|+..+-+++..+|+ +...-..|+.++.-.|.-+ .+.+.+++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4455566667777788888888888777776654 3556667777776666643 444444444
No 440
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.32 E-value=4.2e+02 Score=25.00 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=81.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS-HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 421 (643)
++...-+.|+++++.+.++++...+...+..--+.+-.+|- ..|....+++++..+.....-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 45666778888888888888888765555544444444442 234455666666666553222212 2222333222211
Q ss_pred ------CCHHHHHHHHHhC--CC--CCCHHH-HHHHHHHHH----Hc-------CCHHHHHHHHHHHHh-----cCCCCc
Q 045672 422 ------GKLQEAVKLIHEM--PY--EPDAVT-WRALLGACK----VH-------RNTDLAICAAKKILN-----LDPQDP 474 (643)
Q Consensus 422 ------g~~~~A~~~~~~m--~~--~p~~~~-~~~ll~~~~----~~-------g~~~~a~~~~~~~~~-----~~p~~~ 474 (643)
.--.+...+++.. |. .+...+ |.-+-+-|. .. .-.+.|...|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 1123445555543 11 111222 222211111 11 123677777877764 457676
Q ss_pred chHHHHH----HHHHccCChhHHHHHHHHHHhCCC
Q 045672 475 GTYILLS----NIYANSQKWDEVAEVRKTMRARGI 505 (643)
Q Consensus 475 ~~~~~l~----~~~~~~g~~~~a~~~~~~m~~~g~ 505 (643)
.-+...+ -.|-..|+.++|.++-+...+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 4333222 234668999999999888776544
No 441
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.66 E-value=9.1e+02 Score=28.68 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=12.6
Q ss_pred HHHhcCCHHHHHHHHhhc
Q 045672 315 MYCKCGSLEDAMSVFSRM 332 (643)
Q Consensus 315 ~y~~~g~~~~A~~~~~~m 332 (643)
+|..+|...+|...|.+.
T Consensus 929 ~yl~tge~~kAl~cF~~a 946 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSA 946 (1480)
T ss_pred eeecCCchHHHHHHHHHH
Confidence 366777777777777655
No 442
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=32.52 E-value=5.9e+02 Score=26.46 Aligned_cols=171 Identities=11% Similarity=-0.061 Sum_probs=91.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHH
Q 045672 81 IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKAL 160 (643)
Q Consensus 81 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 160 (643)
|+++...| +.+...+-..+.....+ ..+.....++....+......+.+.+..++.........++...+.....-
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~--ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~ 120 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEP--GRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP 120 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCCh--hHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH
Confidence 56666666 56677666666443333 333333333332222233566666666677767888888888887765554
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhchhhH-HHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcc
Q 045672 161 ELLIFMLREGVRPNMFTYSAVLRACDSLIIL-RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV 239 (643)
Q Consensus 161 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~ 239 (643)
. +..+.+ .++.......+.+++..+.- ........+ .+|..+-..-+.+++..++.+..-.+-.-....|..
T Consensus 121 ~-L~~~L~---~~~p~vR~aal~al~~r~~~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~ 193 (410)
T TIGR02270 121 W-LEPLLA---ASEPPGRAIGLAALGAHRHDPGPALEAALT---HEDALVRAAALRALGELPRRLSESTLRLYLRDSDPE 193 (410)
T ss_pred H-HHHHhc---CCChHHHHHHHHHHHhhccChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHH
Confidence 4 444443 34445555555666543321 111111121 556666666666666666644443333334445555
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHH
Q 045672 240 VWNSIIGGFAQNSDVDEALNLYKR 263 (643)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~ 263 (643)
.-..-+.+....|. .+|...+..
T Consensus 194 VR~aA~~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 194 VRFAALEAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred HHHHHHHHHHHcCC-HhHHHHHHH
Confidence 55555666666666 555555444
No 443
>PRK13342 recombination factor protein RarA; Reviewed
Probab=32.22 E-value=6e+02 Score=26.41 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=31.3
Q ss_pred hHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 045672 339 SWSTMISGLAQ---NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385 (643)
Q Consensus 339 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 385 (643)
....+++++.+ .++.+.|+..+..|.+.|..|....-..+..++...
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 34445555555 478899999999999988877755544444444333
No 444
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.20 E-value=4.3e+02 Score=24.71 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=9.8
Q ss_pred HHhcCCHHHHHHHHHh
Q 045672 418 LGRAGKLQEAVKLIHE 433 (643)
Q Consensus 418 ~~~~g~~~~A~~~~~~ 433 (643)
+.|.|..++|+++.+.
T Consensus 113 liR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 113 LIREGKTEEALEFAQT 128 (228)
T ss_pred HHHhhhHHHHHHHHHH
Confidence 3466667777766643
No 445
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=31.48 E-value=79 Score=29.39 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=49.9
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 450 CKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
..+.++.+.+.+++.+++++-|+....|..++..-.++|+.+.|.+-+++..+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3467899999999999999999999999999999999999999999999887654
No 446
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=30.51 E-value=2.5e+02 Score=29.64 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=60.6
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------CcchHH
Q 045672 407 GREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ--------DPGTYI 478 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------~~~~~~ 478 (643)
++..|-..+.-|+..+++++|.++.+-.+ +...|.++......+.+...++.+|..+.+.+.- -+.--.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 34457777788889999999999877653 5678888888888888888888777776654321 111223
Q ss_pred HHHHHHHccCChhHHHHHHH
Q 045672 479 LLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 479 ~l~~~~~~~g~~~~a~~~~~ 498 (643)
.++....-.|+..||.-++.
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHhccchhhhHHHH
Confidence 44455555677777776654
No 447
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.51 E-value=2.6e+02 Score=30.49 Aligned_cols=81 Identities=17% Similarity=0.207 Sum_probs=52.3
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCC------CcchHHHHHHHHHhCCChh------HHHHHHHHHHHcCCCCCHHHHHHH
Q 045672 212 ALIDIYAKLGELRNAECVFNEMPTR------DLVVWNSIIGGFAQNSDVD------EALNLYKRMKRAGFAADQSTLTSV 279 (643)
Q Consensus 212 ~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~t~~~l 279 (643)
+|..+|...|++-.+.++++..... =...+|..|..+.++|.++ .|.+++++. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 6778888888888888888776542 1346788888888888754 333333333 345577888887
Q ss_pred HHHHhcCChhHhHHHH
Q 045672 280 LRACTGLALLELGTQV 295 (643)
Q Consensus 280 l~a~~~~~~~~~a~~i 295 (643)
+.+..+.-.-..+.-+
T Consensus 110 ~~~sln~t~~~l~~pv 125 (1117)
T COG5108 110 CQASLNPTQRQLGLPV 125 (1117)
T ss_pred HHhhcChHhHHhccHH
Confidence 7776554443333333
No 448
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=30.27 E-value=4.1e+02 Score=24.94 Aligned_cols=102 Identities=18% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 045672 351 GYSQEALKLFESMKVSR-IKPN--YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427 (643)
Q Consensus 351 g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 427 (643)
|+++.|+++.+-+++.| ..|+ ..++-+++ |.++++.....+.-......|....-.-...+.
T Consensus 97 Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v-----------aeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~---- 161 (230)
T PHA02537 97 GDFDGALEIAEYALEHGLTMPDQFRRTLANFV-----------AEEVANAALKAASAGESVEPYFLRVFLDLTTEW---- 161 (230)
T ss_pred cCHHHHHHHHHHHHHcCCCCCccccCCchHHH-----------HHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcC----
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHH---------HHcCCHHHHHHHHHHHHhcCCC
Q 045672 428 VKLIHEMPYEPDAVTWRALLGAC---------KVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 428 ~~~~~~m~~~p~~~~~~~ll~~~---------~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
.|+.+.....|..+...+ ...++...|...++++.+++|+
T Consensus 162 -----dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 162 -----DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred -----CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
No 449
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.25 E-value=3.2e+02 Score=29.89 Aligned_cols=47 Identities=15% Similarity=0.011 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCCH
Q 045672 342 TMISGLAQNGYSQEALKLFESMKVSR--IKPNYITIVGVLFACSHAGFV 388 (643)
Q Consensus 342 ~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~g~~ 388 (643)
+++.+|..+|++..+.++++.+.... -+.-...++..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 45555555665555555555554321 111123344444444555543
No 450
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=30.15 E-value=1.9e+02 Score=22.18 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHH
Q 045672 94 KLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKA 159 (643)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 159 (643)
..++..+++.|+- +....-..-+...+.+.|.++++.++.++..+|..+..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3466666666542 2222222233445677888888888888888888888888777765544
No 451
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=28.51 E-value=4.5e+02 Score=23.88 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=29.3
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCC------CChhhHHHHHH-HHHhcCC--HHHHHHHHHHHHH
Q 045672 310 NALLDMYCKCGSLEDAMSVFSRMIQ------KDVISWSTMIS-GLAQNGY--SQEALKLFESMKV 365 (643)
Q Consensus 310 ~~Li~~y~~~g~~~~A~~~~~~m~~------~~~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~ 365 (643)
+.-+-.....|++++|..-++.+.+ +-...|..+.. +++.++. +-+|..++.-...
T Consensus 33 s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 33 SGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 3333344556777777776666532 12334555544 5666553 3455555554443
No 452
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=28.24 E-value=1.4e+02 Score=22.22 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=25.8
Q ss_pred HhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 045672 50 CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLA 86 (643)
Q Consensus 50 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 86 (643)
...|+.+.+.+++++....|..|.......+..+...
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~ 48 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE 48 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4478888888988888888877776665556555443
No 453
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=27.76 E-value=6.8e+02 Score=25.64 Aligned_cols=27 Identities=7% Similarity=-0.208 Sum_probs=16.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045672 346 GLAQNGYSQEALKLFESMKVSRIKPNY 372 (643)
Q Consensus 346 ~~~~~g~~~~A~~l~~~m~~~g~~p~~ 372 (643)
.+.+.+++..|.++|+++....+.|+.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~ 165 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVN 165 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhh
Confidence 445566666777777766665444443
No 454
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=27.67 E-value=6.3e+02 Score=25.25 Aligned_cols=128 Identities=13% Similarity=0.103 Sum_probs=83.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh------ccCCHHHHHHHHHHhHHhcCCCCC
Q 045672 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS------HAGFVEDGWNHFKSMKKFYGIDPG 407 (643)
Q Consensus 334 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~------~~g~~~~a~~~~~~~~~~~~~~p~ 407 (643)
+.|-..|+- +-+++++.++++...++. |.....-..+.+|- ..-++..-..+|+.+.. +.|+
T Consensus 261 dQDr~lW~r--------~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apS 328 (415)
T COG4941 261 DQDRSLWDR--------ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPS 328 (415)
T ss_pred ccchhhhhH--------HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCC
Confidence 346666763 235688889998888874 88888887777763 22466677777777654 4555
Q ss_pred hHH-HHHHHHHHHhcCCHHHHHHHHHhCCCCC---CHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 408 REH-YSCMIDLLGRAGKLQEAVKLIHEMPYEP---DAVTW-RALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 408 ~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~p---~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
+.+ .|-- -+++...-.+.++.+++.+.-+| +...| ..-.+.+.+.|..++|...|++++.+.++..
T Consensus 329 PvV~LNRA-VAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 329 PVVTLNRA-VALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred CeEeehHH-HHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 443 3332 23444445666777777764333 22233 3334558899999999999999999887644
No 455
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.32 E-value=1.8e+02 Score=21.04 Aligned_cols=50 Identities=4% Similarity=-0.029 Sum_probs=30.3
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 045672 333 IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383 (643)
Q Consensus 333 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 383 (643)
..+....++.++..+++..-.++++..+.++...|. .+..+|.--++.++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 344555677777777777777777777777777763 34445544444443
No 456
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=26.91 E-value=6e+02 Score=24.78 Aligned_cols=83 Identities=12% Similarity=0.128 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhc-c-CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 045672 352 YSQEALKLFESMKV-SRIKPNYITIVGVLFACSH-A-GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428 (643)
Q Consensus 352 ~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~-~-g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 428 (643)
...+|+.+|+.... ..+--|......+++.... . .....-.++.+.+...++-.++..+..+.++.+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663211 2234455555555554433 1 1222223333334443444455555555555555555555555
Q ss_pred HHHHhC
Q 045672 429 KLIHEM 434 (643)
Q Consensus 429 ~~~~~m 434 (643)
++++..
T Consensus 223 ~fW~~~ 228 (292)
T PF13929_consen 223 QFWEQC 228 (292)
T ss_pred HHHHHh
Confidence 555443
No 457
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.79 E-value=2.5e+02 Score=26.70 Aligned_cols=21 Identities=14% Similarity=0.453 Sum_probs=10.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhc
Q 045672 312 LLDMYCKCGSLEDAMSVFSRM 332 (643)
Q Consensus 312 Li~~y~~~g~~~~A~~~~~~m 332 (643)
+...|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555555555444
No 458
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=26.63 E-value=2.2e+02 Score=25.55 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=23.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 045672 447 LGACKVHRNTDLAICAAKKILNLDPQDPGT 476 (643)
Q Consensus 447 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 476 (643)
+..|.+.|.+++|.+++++..+ +|++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 3569999999999999999988 7766533
No 459
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.59 E-value=7.3e+02 Score=27.21 Aligned_cols=84 Identities=15% Similarity=0.120 Sum_probs=59.8
Q ss_pred hcCCHHHHHHHHHhC-CCCC-C----H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChh
Q 045672 420 RAGKLQEAVKLIHEM-PYEP-D----A--VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491 (643)
Q Consensus 420 ~~g~~~~A~~~~~~m-~~~p-~----~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 491 (643)
+..++..+.++|..- ..-| | . ...+.|--.|....+.+.|.++++++.+.+|.++..-..+..+....|+-+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 455666677666532 2111 1 1 134555566777788899999999998888888888778888888888989
Q ss_pred HHHHHHHHHHhC
Q 045672 492 EVAEVRKTMRAR 503 (643)
Q Consensus 492 ~a~~~~~~m~~~ 503 (643)
+|+.........
T Consensus 446 ~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 446 EALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHhh
Confidence 998888777654
No 460
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=26.50 E-value=3e+02 Score=27.34 Aligned_cols=85 Identities=19% Similarity=0.168 Sum_probs=63.4
Q ss_pred HHHHHhcCCHHHHHHHHHhC-C---CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccC
Q 045672 415 IDLLGRAGKLQEAVKLIHEM-P---YEPD--AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488 (643)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m-~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 488 (643)
.+-|.+..++..|...|.+- . -.|| .+.|+.-..+-.-.||+..++.-..+++..+|.+..+|..=+.++....
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 45577788888888888765 1 1233 4556666666677899999999999999999999888888888888888
Q ss_pred ChhHHHHHHHH
Q 045672 489 KWDEVAEVRKT 499 (643)
Q Consensus 489 ~~~~a~~~~~~ 499 (643)
++++|....+.
T Consensus 168 ~~~~a~nw~ee 178 (390)
T KOG0551|consen 168 RFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHhh
Confidence 86666655443
No 461
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.48 E-value=7.9e+02 Score=25.99 Aligned_cols=154 Identities=15% Similarity=0.083 Sum_probs=96.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH-------HHHHHHH-HHhccCCHHHHHHHHHHhHHhcCCCCChH--HH
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSR-IKPNYI-------TIVGVLF-ACSHAGFVEDGWNHFKSMKKFYGIDPGRE--HY 411 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~-------t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~--~~ 411 (643)
++.+-.-.|++.+|++-...|.+-- -.|... -.-.++. .|...+.++.|..-|....+. --.-|.. .-
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~n 407 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCN 407 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHH
Confidence 3334445799999999999987632 233311 1122333 345568899999888887763 2222322 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH--------HHHH--HHHcCCHHHHHHHHHHHHhcC-CCC-----cc
Q 045672 412 SCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA--------LLGA--CKVHRNTDLAICAAKKILNLD-PQD-----PG 475 (643)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~--------ll~~--~~~~g~~~~a~~~~~~~~~~~-p~~-----~~ 475 (643)
..+.-.|.+.|+-++-.++.+..+ .|+..++.+ ++.+ ....+++.+|...+++.++.. ..| .-
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~ 486 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTAC 486 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 345667899999888888888874 122222211 1222 246789999999999998764 111 22
Q ss_pred hHHHHHHHHHccCChhHHHHHHH
Q 045672 476 TYILLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 476 ~~~~l~~~~~~~g~~~~a~~~~~ 498 (643)
..+.|+.+....|+-.++.+...
T Consensus 487 ~LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 487 SLVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHHHHHHhcchHHHHhccc
Confidence 45677888888899888876554
No 462
>PRK14700 recombination factor protein RarA; Provisional
Probab=25.83 E-value=6.5e+02 Score=24.76 Aligned_cols=97 Identities=10% Similarity=0.060 Sum_probs=0.0
Q ss_pred CCCcchHHHHHHHHHhC---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC-----hhHhHHHHHHHHhh--cCC
Q 045672 235 TRDLVVWNSIIGGFAQN---SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA-----LLELGTQVHVHVLK--YDH 304 (643)
Q Consensus 235 ~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~-----~~~~a~~i~~~~~~--~~~ 304 (643)
+++-..+-.+|+++.++ .+++.|+-++.+|.+.|-.|....-..++.|+...| .+..+...++.... .+.
T Consensus 120 Dk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PE 199 (300)
T PRK14700 120 HREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPE 199 (300)
T ss_pred cCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChH
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhh
Q 045672 305 DLILNNALLDMYCKCGSLEDAMSVFSR 331 (643)
Q Consensus 305 ~~~~~~~Li~~y~~~g~~~~A~~~~~~ 331 (643)
-.....-.+-.++.+-+-..+...+..
T Consensus 200 a~i~La~aviyLA~aPKSNs~y~A~~~ 226 (300)
T PRK14700 200 GRLVLAQAAIYLAVAPKSNACYKALAQ 226 (300)
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHH
No 463
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=25.82 E-value=3.2e+02 Score=21.16 Aligned_cols=38 Identities=8% Similarity=0.134 Sum_probs=25.3
Q ss_pred HcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHH
Q 045672 219 KLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEA 257 (643)
Q Consensus 219 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 257 (643)
..|+.+.|.++++.++ +.+-.|...++++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466777777777777 6666777777777666655444
No 464
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.75 E-value=3.4e+02 Score=26.55 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=35.3
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 045672 213 LIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266 (643)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (643)
++..+.+.+++.+....+..+. .+..-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5555666666666665555553 344445677788889999999998887765
No 465
>PRK02287 hypothetical protein; Provisional
Probab=25.54 E-value=4.8e+02 Score=23.17 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHH
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW-RALLGACKVHRNTDLAICAAKKIL 467 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~ 467 (643)
..+..+++.++.-.|..++|.++++...--++-... ..++..|....+.++..++-++.+
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~ 167 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYL 167 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 334556666666667777777766665432222222 245556665555555555544433
No 466
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=24.85 E-value=3.3e+02 Score=28.08 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=40.6
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCC-----------CChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045672 309 NNALLDMYCKCGSLEDAMSVFSRMIQ-----------KDVISWSTMISGLAQNGYSQEALKLFESMK 364 (643)
Q Consensus 309 ~~~Li~~y~~~g~~~~A~~~~~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 364 (643)
.-.|+..++-.|++..|.++++.+.- -.+.++--+.-+|...+++.+|++.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888888888877621 134456667777888888888888887653
No 467
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=24.63 E-value=2.5e+02 Score=26.96 Aligned_cols=57 Identities=25% Similarity=0.226 Sum_probs=49.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 446 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+=+++.+.++++.|....++.+.++|+++.-..--+-+|.+.|...-|.+-++...+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 335588899999999999999999999988888889999999999999888877554
No 468
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.33 E-value=3.8e+02 Score=23.02 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 045672 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287 (643)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 287 (643)
--..++..+.+.++.-.|.++++++.+.+...+..|.-..|..+...|
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334566666667666778888888887776666677666666665554
No 469
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=24.15 E-value=6.1e+02 Score=25.36 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhc-------CCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCC-
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRM-------IQKDVISW--STMISGLAQNGYSQEALKLFESMKV-----SRIKPN- 371 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m-------~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~- 371 (643)
.+...++...-+.++.++|.+.++++ ..|+.+.| ..+...+...|+..++.+++.+... .|++|+
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Q ss_pred HHHHHHHHHHHhc
Q 045672 372 YITIVGVLFACSH 384 (643)
Q Consensus 372 ~~t~~~ll~a~~~ 384 (643)
...|..+-+-|.+
T Consensus 156 h~~fY~lssqYyk 168 (380)
T KOG2908|consen 156 HSSFYSLSSQYYK 168 (380)
T ss_pred hhhHHHHHHHHHH
No 470
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.08 E-value=3e+02 Score=23.66 Aligned_cols=65 Identities=15% Similarity=0.106 Sum_probs=38.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH
Q 045672 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425 (643)
Q Consensus 359 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 425 (643)
+.+.+.+.|++++..-. .++..+.+.+..-.|.++++.+.+. +..-+..|--.-++.+...|-+.
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCEE
Confidence 33445566666554322 4555555666667788888887764 44444444444467777777643
No 471
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=24.04 E-value=2.5e+02 Score=22.53 Aligned_cols=22 Identities=14% Similarity=0.012 Sum_probs=9.7
Q ss_pred HHHHHcCCChhHHHHHHccCCC
Q 045672 116 LNMHVKFSLLEEAQVLFDQMPE 137 (643)
Q Consensus 116 i~~~~~~g~~~~A~~~f~~m~~ 137 (643)
+.-|...|+.++|..-+.++..
T Consensus 9 l~ey~~~~d~~ea~~~l~el~~ 30 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKELKL 30 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHhcCCCHHHHHHHHHHhCC
Confidence 3344444555555555555433
No 472
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=23.83 E-value=6.8e+02 Score=26.86 Aligned_cols=56 Identities=13% Similarity=0.094 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCC--Ccc---hHHHHHHHHHhCCChhHHHHHHHHHHH
Q 045672 211 SALIDIYAKLGELRNAECVFNEMPTR--DLV---VWNSIIGGFAQNSDVDEALNLYKRMKR 266 (643)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (643)
..|+.-|.+.+++++|..++..|.=. ... +.+.+.+.+.+..--.+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35788899999999999999988632 122 334444555555444444445555544
No 473
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.71 E-value=2.4e+02 Score=25.01 Aligned_cols=62 Identities=10% Similarity=0.040 Sum_probs=41.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 045672 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426 (643)
Q Consensus 363 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 426 (643)
+...|++++..-. .++......+..-.|.++++.+.+. +...+..|...-++.+.+.|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEEE
Confidence 4556776665433 4444444556667888999999875 556666665566788888888643
No 474
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=23.57 E-value=4.3e+02 Score=21.97 Aligned_cols=42 Identities=7% Similarity=0.022 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHH
Q 045672 355 EALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFK 396 (643)
Q Consensus 355 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 396 (643)
++.++|..|...|+--. +.-|..-...+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55556666655554433 3334444444455555555555554
No 475
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=23.54 E-value=1.5e+02 Score=21.79 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 045672 90 VEEAKLVHNHVLSGGFEPETFLVNILLNMHVK 121 (643)
Q Consensus 90 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 121 (643)
.+.|++++..+... -..++..||++...+.+
T Consensus 13 tEmA~~mL~DLr~d-ekRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 13 TEMAQQMLADLRDD-EKRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHHhcch-hhcChHHHHHHHHHHHH
Confidence 44455555444332 23445555555544443
No 476
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=23.50 E-value=55 Score=17.25 Aligned_cols=12 Identities=25% Similarity=0.277 Sum_probs=8.8
Q ss_pred cchhhHHHHHhh
Q 045672 604 GDCHTFAKLTAK 615 (643)
Q Consensus 604 ~~~~~~~~~~s~ 615 (643)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 346888888873
No 477
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.43 E-value=1.2e+03 Score=26.91 Aligned_cols=129 Identities=18% Similarity=0.145 Sum_probs=86.1
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 045672 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395 (643)
Q Consensus 316 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 395 (643)
...||+++.|.+.-..+. |...|..|...-..+|+.+-|...|++... |..|--.|.-.|+.++-.++.
T Consensus 653 aLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~ 721 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMM 721 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHH
Confidence 347899999888766554 456899999999999999999999888764 333333456678888876665
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 396 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
+....+ .|.... -... .-.|+.++=.+++...+..|- .|. ....+|.-+.|.++.++.-.
T Consensus 722 ~iae~r----~D~~~~-~qna--lYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 722 KIAEIR----NDATGQ-FQNA--LYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHhh----hhhHHH-HHHH--HHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 555432 222211 1111 226888888888888865442 121 12468888999999888865
No 478
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=23.38 E-value=1.2e+03 Score=27.06 Aligned_cols=55 Identities=9% Similarity=-0.054 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 045672 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426 (643)
Q Consensus 372 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 426 (643)
..++..-..-....|++..|.+++.++.+..+-.++...|-.+++.+...|.-.-
T Consensus 1231 sK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H~ 1285 (1304)
T KOG1114|consen 1231 SKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNHL 1285 (1304)
T ss_pred chheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchHh
Confidence 3333333333445566777777777776655666666666666666666665433
No 479
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=23.32 E-value=3e+02 Score=22.19 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=41.3
Q ss_pred hhhhhHHHHHHHhhccCCCCCcEEEEeccccccchhhHHHHHhhhcCeeEEEeCC
Q 045672 572 IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDP 626 (643)
Q Consensus 572 ~~~~~~~la~~~~~~~~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~~~~~~~ 626 (643)
+..|-|.-++.---.+..+|..+.|.--++-|..|..++.-.+.-.+-.|+-++.
T Consensus 47 laTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~ 101 (118)
T PF14427_consen 47 LATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWP 101 (118)
T ss_pred hhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecC
Confidence 5667776554332223334888888889999999999999999988888887764
No 480
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=23.17 E-value=4e+02 Score=21.37 Aligned_cols=62 Identities=10% Similarity=0.151 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC--CHHHHHHHHHHHHHcCC
Q 045672 42 LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARH--AVEEAKLVHNHVLSGGF 105 (643)
Q Consensus 42 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~ 105 (643)
...+|..|...+++++|.+.+.++.... -.......++..+...+ .-+....++..+.+.+.
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 3457788889999999999998876332 12233344555554432 23444555666655543
No 481
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.49 E-value=3.2e+02 Score=25.96 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=6.6
Q ss_pred HHHHhCCChhHHHHHH
Q 045672 148 SAYCDAKMNDKALELL 163 (643)
Q Consensus 148 ~~~~~~g~~~~A~~~~ 163 (643)
++|...|++.+|+.-|
T Consensus 18 rl~l~~~~~~~Av~q~ 33 (247)
T PF11817_consen 18 RLYLWLNQPTEAVRQF 33 (247)
T ss_pred HHHHhCCCHHHHHHHH
Confidence 3444444444444333
No 482
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.02 E-value=7.2e+02 Score=23.93 Aligned_cols=131 Identities=11% Similarity=0.074 Sum_probs=67.1
Q ss_pred CCCcchHHHHHHHH-HhCCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhcCChhHhHHHHHHHHhh-------cC
Q 045672 235 TRDLVVWNSIIGGF-AQNSDVDEALNLYKRMKRAGFAADQST---LTSVLRACTGLALLELGTQVHVHVLK-------YD 303 (643)
Q Consensus 235 ~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~~~~~~~~~a~~i~~~~~~-------~~ 303 (643)
+||+..=|..-.+- .+..++++|+.-|.+..+..-.-.... ...++...-+++++++....+.++.. -.
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 45655433322211 234578999999998876432222333 34455666677777666665555543 12
Q ss_pred CchhHHhHHHHHHHhcCCHHHHHHHHhhcC-----CCChhh----HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045672 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMI-----QKDVIS----WSTMISGLAQNGYSQEALKLFESMKV 365 (643)
Q Consensus 304 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~-----~~~~~~----~~~li~~~~~~g~~~~A~~l~~~m~~ 365 (643)
-+....|++++.-+...+.+--...++.-. .+|... -+.+...|...|.+.+..++++++..
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 223445666665555555554444443321 112222 23345555555666565556555543
No 483
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=21.94 E-value=3.8e+02 Score=20.68 Aligned_cols=41 Identities=15% Similarity=-0.017 Sum_probs=23.8
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhC
Q 045672 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233 (643)
Q Consensus 193 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 233 (643)
++++.....|+..|..+|..+++...-+=-.+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 56666666666666666666666554444444444444444
No 484
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=21.83 E-value=2.9e+02 Score=21.45 Aligned_cols=58 Identities=12% Similarity=0.192 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCh
Q 045672 95 LVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMN 156 (643)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 156 (643)
.++..+...|+- +..- .-...+..-+.+.+.++++.++.++..+|..+..++-..|..
T Consensus 24 ~v~~~L~~~gvl-t~~~---~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 24 ELLIHLLQKDIL-TDSM---AESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHcCCC-CHHH---HHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 455666665542 2211 122223445667788888888888888888888877655543
No 485
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=21.61 E-value=6.2e+02 Score=23.05 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=12.7
Q ss_pred HccCChhHHHHHHHHHHh
Q 045672 485 ANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 485 ~~~g~~~~a~~~~~~m~~ 502 (643)
.+.|++++|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 456777888877777764
No 486
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=21.19 E-value=5.2e+02 Score=22.03 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=25.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 045672 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479 (643)
Q Consensus 446 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 479 (643)
|.-++.+.++++.++++.+.+++.+|+|..+...
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3345778888888888888888888887655443
No 487
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=21.13 E-value=4.9e+02 Score=21.71 Aligned_cols=40 Identities=8% Similarity=0.073 Sum_probs=30.3
Q ss_pred HHHHHHHHHh--cCCCCcchHHHHHHHHHccCChhHHHHHHH
Q 045672 459 AICAAKKILN--LDPQDPGTYILLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 459 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 498 (643)
...+|..|.. ++-.-+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4566777665 345566678888888899999999998885
No 488
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=21.11 E-value=2.7e+02 Score=22.54 Aligned_cols=44 Identities=7% Similarity=-0.082 Sum_probs=24.1
Q ss_pred HHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 045672 45 DFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARH 88 (643)
Q Consensus 45 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 88 (643)
++..+...+..-.|-++++.+.+.+...+..|.-..|+.+...|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 44455555555566666666666554555555444455554444
No 489
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=20.97 E-value=2.1e+02 Score=21.15 Aligned_cols=41 Identities=20% Similarity=0.097 Sum_probs=30.6
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhh
Q 045672 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190 (643)
Q Consensus 150 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 190 (643)
....|+.+.+.+++++....|..|.......+..+....|.
T Consensus 11 al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 11 ALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999888887777767666555443
No 490
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=20.91 E-value=1.2e+03 Score=26.32 Aligned_cols=173 Identities=12% Similarity=0.113 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHh--------CCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCh
Q 045672 54 DLPRAMKAMHAMQC--------HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL 125 (643)
Q Consensus 54 ~~~~A~~~~~~m~~--------~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 125 (643)
+.++...+++.... .++..+..+...++..+ .|+..++..+++.+........... .-+..-.-...+
T Consensus 169 s~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~--i~It~~~~~e~l 244 (725)
T PRK13341 169 SDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGL--IDITLAIAEESI 244 (725)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCc--eeccHHHHHHHH
Q ss_pred hHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH--------HHHHH
Q 045672 126 EEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR--------QLHCG 197 (643)
Q Consensus 126 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~--------~~~~~ 197 (643)
.+...+++.-.......-.+++..... ++++.|+..+.+|.+.|..|....-..++-+....|..+ ..+..
T Consensus 245 ~~~~~~ydk~gd~hyd~Isa~~ksirg-sD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a 323 (725)
T PRK13341 245 QQRAVLYDKEGDAHFDTISAFIKSLRG-SDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAA 323 (725)
T ss_pred HHhhhhcccCCCCCHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Q ss_pred HHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhh
Q 045672 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232 (643)
Q Consensus 198 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 232 (643)
....|++--.....-.+-.++.+-+-..+ ..++.
T Consensus 324 ~~~~g~pE~~~~laq~~~~la~apKSns~-~a~~~ 357 (725)
T PRK13341 324 FERVGLPEGLYPLAQAALYLATAPKSNSV-LGFFD 357 (725)
T ss_pred HHHhCCcchhhHHHHHHHHHHcCCCccHH-HHHHH
No 491
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=20.80 E-value=44 Score=24.10 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=16.4
Q ss_pred eeEEEeCCCcccccCCcccCC
Q 045672 619 QTIVIRDPIRYHHFQDGNCSC 639 (643)
Q Consensus 619 ~~~~~~~~~~~h~~~~g~~s~ 639 (643)
..|-+.|.+..|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 456788999999999998653
No 492
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=20.68 E-value=2.1e+02 Score=28.05 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=46.8
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 045672 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRAL-LGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479 (643)
Q Consensus 405 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 479 (643)
..|+..|...+.-..+.|.+.+...++.+. ...| |+..|-.- ---+..+++++.+..++.+.+.++|++|..|..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 334555555554444555556666666555 2234 44455431 222567889999999999999999998877654
No 493
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=20.67 E-value=5.1e+02 Score=21.68 Aligned_cols=91 Identities=10% Similarity=0.157 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH---HHHHHHhchhhHH----------HHHHHHHHhCCCCchhH
Q 045672 143 WTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYS---AVLRACDSLIILR----------QLHCGIIKVGFESDVFV 209 (643)
Q Consensus 143 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~~~~~~----------~~~~~~~~~g~~~~~~~ 209 (643)
....++.+.+..-.-.++++..++....-.|..+.-. .-++.|....+-. .+...+++.++......
T Consensus 21 ~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VRlvcvfl~sLir~~i~~~~~l 100 (126)
T PF10155_consen 21 FKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVRLVCVFLQSLIRNKIIDVEDL 100 (126)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHcCCCchHHH
Confidence 4445555555555566777777776655444433222 1233333222111 34445556666555566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhC
Q 045672 210 RSALIDIYAKLGELRNAECVFNEM 233 (643)
Q Consensus 210 ~~~li~~y~~~g~~~~A~~~f~~~ 233 (643)
+..+-..+.+..+..+|..+|+-+
T Consensus 101 ~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 101 FIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred HhhHHHHHHHHccHHHHHHHHHHH
Confidence 666666666666777777777654
No 494
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=20.54 E-value=7.4e+02 Score=23.53 Aligned_cols=83 Identities=14% Similarity=0.112 Sum_probs=45.2
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH-HHHcCCHHHHH
Q 045672 384 HAGFVEDGWNHFKSMKKFYGIDPGRE-HYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLGA-CKVHRNTDLAI 460 (643)
Q Consensus 384 ~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~-~~~~g~~~~a~ 460 (643)
....++.|...+.+... +.|+.. -|+.=+..+.+..+++.+.+--.+. .+.||.+.-..+++. ......+++|+
T Consensus 22 ~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred chhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 33445555554444433 456553 3344455555566666555433322 455666655555544 45566777788
Q ss_pred HHHHHHHhc
Q 045672 461 CAAKKILNL 469 (643)
Q Consensus 461 ~~~~~~~~~ 469 (643)
..+.++..+
T Consensus 99 ~~Lqra~sl 107 (284)
T KOG4642|consen 99 KVLQRAYSL 107 (284)
T ss_pred HHHHHHHHH
Confidence 777777543
No 495
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=20.50 E-value=1.4e+02 Score=29.11 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=10.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc
Q 045672 453 HRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 453 ~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
+++.-+|-.+|-+++.+.|.+.
T Consensus 163 ~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 163 HNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred hhhhHhhhhhhheeeeeCCCch
Confidence 3444444455555554444443
No 496
>PHA03100 ankyrin repeat protein; Provisional
Probab=20.37 E-value=1e+03 Score=25.05 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=23.6
Q ss_pred cCCChhHHHHHHccCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 045672 121 KFSLLEEAQVLFDQMPER---NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174 (643)
Q Consensus 121 ~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 174 (643)
..|+.+-+..+++.-... +...++. +...+..|. .-.++++.+.+.|..++
T Consensus 117 ~~~~~~iv~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~--~~~~iv~~Ll~~g~din 170 (480)
T PHA03100 117 KSNSYSIVEYLLDNGANVNIKNSDGENL-LHLYLESNK--IDLKILKLLIDKGVDIN 170 (480)
T ss_pred ccChHHHHHHHHHcCCCCCccCCCCCcH-HHHHHHcCC--ChHHHHHHHHHCCCCcc
Confidence 666666666666543332 2222333 333344442 12334445555665544
No 497
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=20.20 E-value=4e+02 Score=27.82 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=33.6
Q ss_pred HHHHHcCCCCCHHHH--HHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHh
Q 045672 262 KRMKRAGFAADQSTL--TSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFS 330 (643)
Q Consensus 262 ~~m~~~g~~p~~~t~--~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~ 330 (643)
+.+.+.|..++..++ ++.+.-|+..|.++-.+.+...-.++..+..-.+-|+. -...|..+....+.+
T Consensus 167 qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~-Aa~tG~~~iVe~L~~ 236 (615)
T KOG0508|consen 167 QYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLL-AAVTGHTDIVERLLQ 236 (615)
T ss_pred HHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHH-HhhhcchHHHHHHhc
Confidence 344556666666555 45667777777776655555443332222222222222 233455555444444
No 498
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.08 E-value=4e+02 Score=23.55 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCh
Q 045672 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288 (643)
Q Consensus 242 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 288 (643)
..++..+...++.-.|.++++.+.+.+..++..|.-..|..+...|-
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 34455555555566777777777777766676666555665555553
No 499
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.03 E-value=1.4e+03 Score=26.51 Aligned_cols=18 Identities=22% Similarity=0.315 Sum_probs=12.6
Q ss_pred HhCCChhHHHHHHHHHHH
Q 045672 249 AQNSDVDEALNLYKRMKR 266 (643)
Q Consensus 249 ~~~g~~~~A~~~~~~m~~ 266 (643)
.+.|+.++|+.++-....
T Consensus 695 ~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 695 GRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhhhHHHHHHHHHHHhc
Confidence 377888888887765543
Done!